Query 014353
Match_columns 426
No_of_seqs 283 out of 3464
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 04:18:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1764 5'-AMP-activated prote 100.0 9.1E-29 2E-33 241.2 29.5 324 46-425 58-381 (381)
2 COG3448 CBS-domain-containing 100.0 4.9E-28 1.1E-32 217.4 11.4 168 16-243 191-374 (382)
3 COG2524 Predicted transcriptio 99.8 7.8E-18 1.7E-22 149.4 12.5 124 252-404 169-292 (294)
4 COG3448 CBS-domain-containing 99.7 2.4E-17 5.2E-22 148.9 12.6 296 63-407 66-376 (382)
5 COG2524 Predicted transcriptio 99.7 1.4E-16 3E-21 141.6 12.5 126 173-318 166-291 (294)
6 PRK14869 putative manganese-de 99.7 2.1E-16 4.6E-21 164.0 13.9 305 54-401 68-391 (546)
7 cd04618 CBS_pair_5 The CBS dom 99.6 5.8E-15 1.2E-19 117.4 11.9 93 270-400 3-97 (98)
8 KOG1764 5'-AMP-activated prote 99.6 2.5E-14 5.3E-19 140.1 17.4 200 63-320 161-361 (381)
9 cd04641 CBS_pair_28 The CBS do 99.6 1.5E-14 3.3E-19 119.2 13.4 118 269-400 2-119 (120)
10 COG3620 Predicted transcriptio 99.6 4.6E-14 1E-18 116.5 13.8 137 233-405 50-186 (187)
11 cd04603 CBS_pair_KefB_assoc Th 99.6 3.3E-14 7.2E-19 115.6 12.0 108 270-400 3-110 (111)
12 COG3620 Predicted transcriptio 99.6 5.2E-14 1.1E-18 116.2 12.3 121 53-241 64-184 (187)
13 cd04619 CBS_pair_6 The CBS dom 99.6 5.6E-14 1.2E-18 114.8 12.6 111 270-400 3-113 (114)
14 TIGR03520 GldE gliding motilit 99.6 7.6E-14 1.7E-18 138.9 15.6 131 252-411 188-319 (408)
15 cd04614 CBS_pair_1 The CBS dom 99.5 7.9E-14 1.7E-18 110.4 11.9 93 270-400 3-95 (96)
16 PRK15094 magnesium/cobalt effl 99.5 1.4E-13 2.9E-18 130.9 15.5 133 252-411 64-197 (292)
17 cd04600 CBS_pair_HPP_assoc Thi 99.5 7.5E-14 1.6E-18 115.5 12.0 122 269-401 3-124 (124)
18 cd04642 CBS_pair_29 The CBS do 99.5 1.5E-13 3.3E-18 114.3 13.8 123 270-400 3-125 (126)
19 cd04627 CBS_pair_14 The CBS do 99.5 1.8E-13 4E-18 113.3 13.5 118 269-398 2-120 (123)
20 cd04617 CBS_pair_4 The CBS dom 99.5 1.3E-13 2.8E-18 113.3 11.9 113 269-400 2-117 (118)
21 cd04630 CBS_pair_17 The CBS do 99.5 2.3E-13 5.1E-18 111.0 12.5 110 270-400 3-113 (114)
22 cd04618 CBS_pair_5 The CBS dom 99.5 2.5E-13 5.4E-18 108.0 11.9 95 192-315 2-97 (98)
23 cd04593 CBS_pair_EriC_assoc_ba 99.5 2.9E-13 6.3E-18 110.5 12.4 110 270-400 3-114 (115)
24 cd04607 CBS_pair_NTP_transfera 99.5 3.1E-13 6.8E-18 110.0 12.5 109 270-400 4-112 (113)
25 cd04608 CBS_pair_PALP_assoc Th 99.5 7.3E-14 1.6E-18 116.1 8.7 113 269-402 3-124 (124)
26 PRK14869 putative manganese-de 99.5 5.6E-13 1.2E-17 138.5 17.1 195 179-403 68-304 (546)
27 cd04641 CBS_pair_28 The CBS do 99.5 6.5E-13 1.4E-17 109.4 13.4 116 192-315 2-119 (120)
28 cd04615 CBS_pair_2 The CBS dom 99.5 7.7E-13 1.7E-17 107.5 13.3 110 270-400 3-112 (113)
29 cd04596 CBS_pair_DRTGG_assoc T 99.5 6.6E-13 1.4E-17 107.2 12.8 105 269-400 3-107 (108)
30 cd04619 CBS_pair_6 The CBS dom 99.5 7.3E-13 1.6E-17 108.1 13.1 112 65-238 2-113 (114)
31 cd04632 CBS_pair_19 The CBS do 99.5 8.1E-13 1.7E-17 110.1 13.0 120 270-400 3-127 (128)
32 cd04637 CBS_pair_24 The CBS do 99.5 1.3E-12 2.9E-17 107.7 14.2 119 270-400 3-121 (122)
33 cd04631 CBS_pair_18 The CBS do 99.5 9E-13 1.9E-17 109.2 13.2 121 270-401 3-125 (125)
34 cd04603 CBS_pair_KefB_assoc Th 99.5 6.5E-13 1.4E-17 107.9 11.8 109 65-238 2-110 (111)
35 cd04605 CBS_pair_MET2_assoc Th 99.5 1.8E-12 3.9E-17 104.8 14.2 107 269-400 3-109 (110)
36 cd04643 CBS_pair_30 The CBS do 99.5 9.2E-13 2E-17 107.5 12.5 113 269-400 2-115 (116)
37 cd04801 CBS_pair_M50_like This 99.5 4.9E-13 1.1E-17 109.0 10.8 110 270-400 3-113 (114)
38 cd04582 CBS_pair_ABC_OpuCA_ass 99.5 1.5E-12 3.2E-17 104.5 13.5 103 270-400 3-105 (106)
39 cd04623 CBS_pair_10 The CBS do 99.5 9.7E-13 2.1E-17 106.7 12.5 110 270-400 3-112 (113)
40 cd04621 CBS_pair_8 The CBS dom 99.5 1.2E-12 2.5E-17 110.5 13.0 128 269-400 2-134 (135)
41 cd04617 CBS_pair_4 The CBS dom 99.5 1.4E-12 3E-17 107.2 13.0 112 192-315 2-117 (118)
42 PRK10892 D-arabinose 5-phospha 99.5 5.6E-13 1.2E-17 129.6 12.5 116 264-401 207-323 (326)
43 cd04639 CBS_pair_26 The CBS do 99.5 9.2E-13 2E-17 106.7 11.8 108 270-400 3-110 (111)
44 PRK11543 gutQ D-arabinose 5-ph 99.5 6.1E-13 1.3E-17 129.1 12.7 122 254-401 196-318 (321)
45 cd04583 CBS_pair_ABC_OpuCA_ass 99.5 1.5E-12 3.3E-17 104.9 13.0 105 270-400 4-108 (109)
46 cd04624 CBS_pair_11 The CBS do 99.4 1.4E-12 3.1E-17 105.7 12.6 109 270-400 3-111 (112)
47 cd04590 CBS_pair_CorC_HlyC_ass 99.4 2.6E-12 5.7E-17 104.0 14.1 107 270-400 3-110 (111)
48 COG2905 Predicted signal-trans 99.4 1.2E-12 2.6E-17 128.7 14.1 118 264-404 154-271 (610)
49 cd04803 CBS_pair_15 The CBS do 99.4 1.4E-12 3E-17 107.6 12.4 120 269-400 2-121 (122)
50 cd04626 CBS_pair_13 The CBS do 99.4 1.5E-12 3.3E-17 105.5 12.3 108 270-400 3-110 (111)
51 PRK07807 inosine 5-monophospha 99.4 1.2E-12 2.7E-17 131.7 14.3 114 264-405 94-207 (479)
52 cd04588 CBS_pair_CAP-ED_DUF294 99.4 2.5E-12 5.4E-17 104.0 13.4 107 270-400 3-109 (110)
53 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 1.7E-12 3.7E-17 105.5 12.3 111 269-400 3-113 (114)
54 cd04587 CBS_pair_CAP-ED_DUF294 99.4 1.5E-12 3.3E-17 105.7 11.9 111 269-400 2-112 (113)
55 cd04585 CBS_pair_ACT_assoc2 Th 99.4 3.1E-12 6.7E-17 105.2 13.3 119 270-400 3-121 (122)
56 cd04629 CBS_pair_16 The CBS do 99.4 1.2E-12 2.6E-17 106.5 10.5 111 270-400 3-113 (114)
57 cd04636 CBS_pair_23 The CBS do 99.4 2.1E-12 4.5E-17 108.4 12.0 126 270-400 3-131 (132)
58 cd04608 CBS_pair_PALP_assoc Th 99.4 1.1E-12 2.4E-17 109.0 10.0 114 64-240 2-124 (124)
59 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 2E-12 4.4E-17 104.9 11.4 110 270-400 3-113 (114)
60 cd04630 CBS_pair_17 The CBS do 99.4 4.6E-12 9.9E-17 103.3 13.4 112 65-238 2-113 (114)
61 cd04606 CBS_pair_Mg_transporte 99.4 1.8E-12 3.9E-17 104.8 10.9 103 273-402 2-109 (109)
62 cd04640 CBS_pair_27 The CBS do 99.4 2E-12 4.3E-17 107.6 11.4 111 270-400 3-125 (126)
63 cd04800 CBS_pair_CAP-ED_DUF294 99.4 3.7E-12 8E-17 103.1 12.8 108 270-400 3-110 (111)
64 PRK11573 hypothetical protein; 99.4 3.6E-12 7.8E-17 126.9 15.3 135 252-411 184-319 (413)
65 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 4.1E-12 8.9E-17 102.7 13.0 108 270-400 3-110 (111)
66 cd04595 CBS_pair_DHH_polyA_Pol 99.4 4.3E-12 9.3E-17 102.6 12.9 107 269-400 3-109 (110)
67 cd04620 CBS_pair_7 The CBS dom 99.4 2.9E-12 6.2E-17 104.5 11.8 109 270-400 3-114 (115)
68 cd04607 CBS_pair_NTP_transfera 99.4 4.8E-12 1E-16 102.9 13.0 110 65-238 3-112 (113)
69 cd04586 CBS_pair_BON_assoc Thi 99.4 2.1E-12 4.6E-17 108.7 11.1 128 269-400 3-134 (135)
70 TIGR00400 mgtE Mg2+ transporte 99.4 7.7E-13 1.7E-17 133.7 9.7 175 175-403 127-306 (449)
71 cd04623 CBS_pair_10 The CBS do 99.4 6.6E-12 1.4E-16 101.8 13.4 112 64-238 1-112 (113)
72 cd04642 CBS_pair_29 The CBS do 99.4 4.1E-12 8.9E-17 105.6 12.4 124 65-238 2-125 (126)
73 cd04629 CBS_pair_16 The CBS do 99.4 4.7E-12 1E-16 103.0 12.4 113 64-238 1-113 (114)
74 cd04627 CBS_pair_14 The CBS do 99.4 6.7E-12 1.5E-16 103.8 13.5 118 192-314 2-121 (123)
75 cd04600 CBS_pair_HPP_assoc Thi 99.4 4.3E-12 9.3E-17 104.9 12.2 123 63-238 1-123 (124)
76 PRK10892 D-arabinose 5-phospha 99.4 2.9E-12 6.3E-17 124.6 12.8 122 52-239 200-323 (326)
77 cd04635 CBS_pair_22 The CBS do 99.4 4.5E-12 9.7E-17 104.5 12.2 119 270-400 3-121 (122)
78 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 9.4E-12 2E-16 100.6 13.8 108 270-400 3-110 (111)
79 cd04589 CBS_pair_CAP-ED_DUF294 99.4 5.6E-12 1.2E-16 102.1 12.3 109 270-401 3-111 (111)
80 cd04622 CBS_pair_9 The CBS dom 99.4 6.2E-12 1.4E-16 102.0 12.6 110 270-400 3-112 (113)
81 cd04602 CBS_pair_IMPDH_2 This 99.4 5.3E-12 1.2E-16 102.9 12.1 105 270-400 4-113 (114)
82 cd04643 CBS_pair_30 The CBS do 99.4 5.9E-12 1.3E-16 102.7 12.1 114 65-238 2-115 (116)
83 cd04599 CBS_pair_GGDEF_assoc2 99.4 6.5E-12 1.4E-16 100.5 12.0 101 270-399 3-103 (105)
84 cd04633 CBS_pair_20 The CBS do 99.4 5.8E-12 1.3E-16 103.6 12.0 117 270-400 3-120 (121)
85 cd04625 CBS_pair_12 The CBS do 99.4 1.1E-11 2.4E-16 100.5 13.2 109 270-400 3-111 (112)
86 cd04601 CBS_pair_IMPDH This cd 99.4 4.7E-12 1E-16 102.2 10.9 105 270-400 4-109 (110)
87 cd04609 CBS_pair_PALP_assoc2 T 99.4 6.8E-12 1.5E-16 101.2 11.7 108 270-401 3-110 (110)
88 PRK05567 inosine 5'-monophosph 99.4 1.2E-11 2.6E-16 126.0 16.3 177 180-401 88-265 (486)
89 TIGR00400 mgtE Mg2+ transporte 99.4 4E-12 8.6E-17 128.5 12.7 125 251-407 127-256 (449)
90 cd04621 CBS_pair_8 The CBS dom 99.4 1.3E-11 2.8E-16 104.1 13.7 133 65-238 2-134 (135)
91 PRK11543 gutQ D-arabinose 5-ph 99.4 8.1E-12 1.8E-16 121.3 14.1 121 178-316 196-318 (321)
92 cd04593 CBS_pair_EriC_assoc_ba 99.4 1.4E-11 3.1E-16 100.4 13.4 111 192-315 2-114 (115)
93 cd04610 CBS_pair_ParBc_assoc T 99.4 1E-11 2.2E-16 99.7 12.4 103 270-400 4-106 (107)
94 PRK01862 putative voltage-gate 99.4 6.6E-12 1.4E-16 131.1 14.1 126 254-405 446-573 (574)
95 cd04639 CBS_pair_26 The CBS do 99.4 1.1E-11 2.3E-16 100.4 12.4 109 65-238 2-110 (111)
96 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 1.2E-11 2.6E-16 100.4 12.6 113 64-238 1-113 (114)
97 cd04586 CBS_pair_BON_assoc Thi 99.4 7.5E-12 1.6E-16 105.4 11.7 127 63-238 1-134 (135)
98 cd04594 CBS_pair_EriC_assoc_ar 99.4 1.6E-11 3.4E-16 98.5 12.9 100 271-400 4-103 (104)
99 cd04632 CBS_pair_19 The CBS do 99.4 1.1E-11 2.5E-16 103.1 12.4 126 64-238 1-127 (128)
100 cd04605 CBS_pair_MET2_assoc Th 99.4 2.3E-11 5E-16 98.2 13.7 107 192-315 3-109 (110)
101 cd04634 CBS_pair_21 The CBS do 99.3 2.2E-11 4.8E-16 103.7 14.1 126 270-400 3-142 (143)
102 cd04803 CBS_pair_15 The CBS do 99.3 1.6E-11 3.6E-16 101.1 12.9 120 65-238 2-121 (122)
103 PRK05567 inosine 5'-monophosph 99.3 1.8E-11 4E-16 124.7 15.9 171 62-316 93-265 (486)
104 cd04636 CBS_pair_23 The CBS do 99.3 1.7E-11 3.6E-16 102.8 13.1 130 65-238 2-131 (132)
105 PRK07807 inosine 5-monophospha 99.3 3.4E-11 7.4E-16 121.4 17.5 180 175-405 85-265 (479)
106 COG4109 Predicted transcriptio 99.3 4.7E-12 1E-16 117.6 10.3 117 256-403 189-306 (432)
107 COG1253 TlyC Hemolysins and re 99.3 2.2E-11 4.9E-16 122.3 16.2 135 251-412 202-337 (429)
108 cd04615 CBS_pair_2 The CBS dom 99.3 2.3E-11 5E-16 98.8 13.3 111 192-315 2-112 (113)
109 COG2905 Predicted signal-trans 99.3 5.2E-12 1.1E-16 124.3 10.8 118 62-243 155-272 (610)
110 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 1.5E-11 3.3E-16 123.8 13.8 113 264-405 93-205 (475)
111 cd04624 CBS_pair_11 The CBS do 99.3 3.3E-11 7.1E-16 97.7 13.4 110 192-315 2-111 (112)
112 cd04801 CBS_pair_M50_like This 99.3 1.7E-11 3.7E-16 99.8 11.7 110 192-315 2-113 (114)
113 cd04614 CBS_pair_1 The CBS dom 99.3 1.6E-11 3.5E-16 97.1 11.2 94 192-315 2-95 (96)
114 cd04631 CBS_pair_18 The CBS do 99.3 2.5E-11 5.3E-16 100.5 12.8 119 192-316 2-125 (125)
115 PRK01862 putative voltage-gate 99.3 1.1E-11 2.3E-16 129.6 12.9 132 47-242 440-572 (574)
116 cd02205 CBS_pair The CBS domai 99.3 4E-11 8.7E-16 96.4 13.6 110 270-400 3-112 (113)
117 TIGR01302 IMP_dehydrog inosine 99.3 3.1E-11 6.7E-16 121.8 15.6 114 264-403 85-201 (450)
118 cd04591 CBS_pair_EriC_assoc_eu 99.3 2.3E-11 5E-16 97.8 11.9 99 269-400 3-104 (105)
119 COG0517 FOG: CBS domain [Gener 99.3 4.9E-11 1.1E-15 97.3 14.0 112 264-399 4-117 (117)
120 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 2.6E-11 5.6E-16 98.5 12.3 111 192-315 3-113 (114)
121 cd04802 CBS_pair_3 The CBS dom 99.3 3.6E-11 7.7E-16 97.5 13.0 109 270-400 3-111 (112)
122 cd04582 CBS_pair_ABC_OpuCA_ass 99.3 3.4E-11 7.3E-16 96.6 12.6 104 192-315 2-105 (106)
123 PRK07107 inosine 5-monophospha 99.3 1.2E-11 2.6E-16 125.4 12.2 110 270-402 107-219 (502)
124 cd04584 CBS_pair_ACT_assoc Thi 99.3 2.6E-11 5.5E-16 99.7 12.0 117 270-400 3-120 (121)
125 cd04596 CBS_pair_DRTGG_assoc T 99.3 2.5E-11 5.5E-16 97.8 11.6 105 192-315 3-107 (108)
126 PLN02274 inosine-5'-monophosph 99.3 2.1E-11 4.6E-16 123.7 13.5 115 265-404 106-223 (505)
127 cd04635 CBS_pair_22 The CBS do 99.3 2.5E-11 5.5E-16 99.9 11.6 121 64-238 1-121 (122)
128 TIGR03520 GldE gliding motilit 99.3 5.9E-11 1.3E-15 118.3 16.2 182 28-286 157-348 (408)
129 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 6.3E-11 1.4E-15 95.4 13.4 106 192-315 3-108 (109)
130 cd04620 CBS_pair_7 The CBS dom 99.3 4.9E-11 1.1E-15 97.2 12.6 110 192-315 2-114 (115)
131 cd04626 CBS_pair_13 The CBS do 99.3 6.4E-11 1.4E-15 95.9 13.1 109 192-315 2-110 (111)
132 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 1.2E-10 2.7E-15 117.3 17.8 122 175-320 84-205 (475)
133 PRK15094 magnesium/cobalt effl 99.3 8.5E-11 1.8E-15 111.8 15.8 147 29-242 33-190 (292)
134 cd04800 CBS_pair_CAP-ED_DUF294 99.3 8.4E-11 1.8E-15 95.1 13.6 109 192-315 2-110 (111)
135 cd04625 CBS_pair_12 The CBS do 99.3 7.5E-11 1.6E-15 95.5 13.3 110 65-238 2-111 (112)
136 cd04587 CBS_pair_CAP-ED_DUF294 99.3 7.4E-11 1.6E-15 95.7 13.0 111 192-315 2-112 (113)
137 cd04585 CBS_pair_ACT_assoc2 Th 99.3 7.7E-11 1.7E-15 96.7 13.2 116 192-315 2-121 (122)
138 cd04588 CBS_pair_CAP-ED_DUF294 99.3 1.1E-10 2.4E-15 94.3 13.7 108 192-315 2-109 (110)
139 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 1.1E-10 2.4E-15 94.2 13.7 109 192-315 2-110 (111)
140 cd04802 CBS_pair_3 The CBS dom 99.3 1.1E-10 2.3E-15 94.6 13.5 111 64-238 1-111 (112)
141 cd04598 CBS_pair_GGDEF_assoc T 99.3 6.7E-11 1.4E-15 97.0 12.3 111 270-400 3-118 (119)
142 cd04589 CBS_pair_CAP-ED_DUF294 99.3 1.5E-10 3.2E-15 93.7 13.7 110 192-316 2-111 (111)
143 cd04590 CBS_pair_CorC_HlyC_ass 99.3 1.2E-10 2.6E-15 94.1 13.0 108 192-315 2-110 (111)
144 cd04640 CBS_pair_27 The CBS do 99.3 5.3E-11 1.2E-15 98.9 11.1 112 192-315 2-125 (126)
145 cd04595 CBS_pair_DHH_polyA_Pol 99.3 2E-10 4.4E-15 92.7 14.0 107 192-315 3-109 (110)
146 TIGR00393 kpsF KpsF/GutQ famil 99.3 4E-11 8.6E-16 113.4 11.3 109 264-394 160-268 (268)
147 cd04637 CBS_pair_24 The CBS do 99.3 1.5E-10 3.2E-15 95.4 13.4 116 192-315 2-121 (122)
148 cd04638 CBS_pair_25 The CBS do 99.2 1.4E-10 3.1E-15 93.0 12.9 103 270-400 3-105 (106)
149 cd04622 CBS_pair_9 The CBS dom 99.2 1.7E-10 3.6E-15 93.6 13.2 110 192-315 2-112 (113)
150 cd04584 CBS_pair_ACT_assoc Thi 99.2 1.9E-10 4.2E-15 94.4 13.7 119 65-238 2-120 (121)
151 cd04633 CBS_pair_20 The CBS do 99.2 1.5E-10 3.3E-15 95.1 13.1 115 192-315 2-120 (121)
152 COG4536 CorB Putative Mg2+ and 99.2 6.1E-11 1.3E-15 111.5 11.8 148 252-424 197-345 (423)
153 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 1.7E-10 3.6E-15 93.2 13.1 109 192-315 2-110 (111)
154 cd04602 CBS_pair_IMPDH_2 This 99.2 1.2E-10 2.6E-15 94.9 12.2 106 65-238 3-113 (114)
155 cd04609 CBS_pair_PALP_assoc2 T 99.2 1.8E-10 4E-15 92.7 12.8 109 192-316 2-110 (110)
156 PTZ00314 inosine-5'-monophosph 99.2 6.4E-11 1.4E-15 120.3 12.1 115 264-403 101-218 (495)
157 cd04599 CBS_pair_GGDEF_assoc2 99.2 2.5E-10 5.5E-15 91.2 12.5 102 192-314 2-103 (105)
158 PLN02274 inosine-5'-monophosph 99.2 1.6E-10 3.5E-15 117.4 13.9 117 62-241 106-222 (505)
159 COG0517 FOG: CBS domain [Gener 99.2 4.7E-10 1E-14 91.5 13.8 108 192-314 8-117 (117)
160 cd04601 CBS_pair_IMPDH This cd 99.2 2.1E-10 4.6E-15 92.4 11.4 107 64-238 2-109 (110)
161 cd04594 CBS_pair_EriC_assoc_ar 99.2 3.9E-10 8.5E-15 90.2 12.8 100 194-315 4-103 (104)
162 TIGR01137 cysta_beta cystathio 99.2 1.6E-10 3.4E-15 117.7 12.9 122 252-402 332-453 (454)
163 COG4535 CorC Putative Mg2+ and 99.2 1.4E-10 3.1E-15 102.2 10.6 166 200-412 32-198 (293)
164 cd04606 CBS_pair_Mg_transporte 99.2 1.7E-10 3.7E-15 93.1 10.3 102 196-316 2-108 (109)
165 cd02205 CBS_pair The CBS domai 99.2 5.6E-10 1.2E-14 89.6 13.2 111 192-315 2-112 (113)
166 PRK07107 inosine 5-monophospha 99.2 2.1E-10 4.5E-15 116.4 12.8 123 180-318 95-220 (502)
167 COG4109 Predicted transcriptio 99.2 1.4E-10 3.1E-15 107.8 10.4 121 179-320 188-308 (432)
168 TIGR01137 cysta_beta cystathio 99.2 3.1E-10 6.6E-15 115.5 13.9 126 47-240 328-453 (454)
169 cd04610 CBS_pair_ParBc_assoc T 99.2 4.8E-10 1E-14 89.9 12.1 104 192-315 3-106 (107)
170 COG2239 MgtE Mg/Co/Ni transpor 99.2 2.3E-10 5.1E-15 113.5 12.2 124 252-407 129-257 (451)
171 TIGR00393 kpsF KpsF/GutQ famil 99.2 3E-10 6.5E-15 107.4 12.3 113 179-309 155-268 (268)
172 cd04591 CBS_pair_EriC_assoc_eu 99.2 7.2E-10 1.6E-14 89.1 12.4 99 65-238 3-104 (105)
173 cd04592 CBS_pair_EriC_assoc_eu 99.1 4.6E-10 1E-14 94.4 11.3 116 270-387 3-119 (133)
174 TIGR01302 IMP_dehydrog inosine 99.1 6.5E-10 1.4E-14 112.2 13.3 117 181-318 82-201 (450)
175 cd04634 CBS_pair_21 The CBS do 99.1 2.2E-09 4.7E-14 91.4 13.9 115 192-315 2-142 (143)
176 PTZ00314 inosine-5'-monophosph 99.1 3.8E-09 8.3E-14 107.4 16.9 111 192-318 105-218 (495)
177 cd04638 CBS_pair_25 The CBS do 99.1 3.2E-09 6.9E-14 85.1 12.7 104 65-238 2-105 (106)
178 cd04598 CBS_pair_GGDEF_assoc T 99.1 3.2E-09 7E-14 86.9 12.6 113 192-315 2-118 (119)
179 cd04592 CBS_pair_EriC_assoc_eu 99.0 2.1E-09 4.5E-14 90.4 10.8 108 65-223 2-118 (133)
180 PF00571 CBS: CBS domain CBS d 99.0 5.3E-10 1.1E-14 79.1 5.7 54 351-404 4-57 (57)
181 PRK11573 hypothetical protein; 99.0 7.7E-09 1.7E-13 103.2 14.1 192 175-408 183-374 (413)
182 TIGR01186 proV glycine betaine 98.9 4.3E-08 9.3E-13 96.0 16.0 111 270-407 252-362 (363)
183 PF00571 CBS: CBS domain CBS d 98.9 7.1E-09 1.5E-13 73.3 6.3 52 62-121 5-56 (57)
184 COG2239 MgtE Mg/Co/Ni transpor 98.8 3.4E-08 7.4E-13 98.3 11.9 128 46-242 122-254 (451)
185 PRK10070 glycine betaine trans 98.8 1.2E-07 2.6E-12 94.1 15.4 106 273-405 290-395 (400)
186 COG1253 TlyC Hemolysins and re 98.8 9.7E-08 2.1E-12 96.1 14.2 190 175-407 202-391 (429)
187 KOG2550 IMP dehydrogenase/GMP 98.5 1.8E-07 4E-12 89.0 7.5 109 269-402 117-227 (503)
188 KOG0474 Cl- channel CLC-7 and 98.5 3.9E-07 8.5E-12 91.1 8.5 138 264-402 587-746 (762)
189 COG4536 CorB Putative Mg2+ and 98.5 2.3E-06 4.9E-11 81.1 12.8 152 27-241 164-324 (423)
190 COG4535 CorC Putative Mg2+ and 98.4 1.1E-06 2.4E-11 77.9 7.3 127 175-318 63-189 (293)
191 TIGR01186 proV glycine betaine 98.3 7.8E-06 1.7E-10 80.2 13.7 107 194-319 253-359 (363)
192 KOG0474 Cl- channel CLC-7 and 98.3 2.3E-06 4.9E-11 85.8 7.7 136 175-316 578-745 (762)
193 PRK10070 glycine betaine trans 98.3 1.1E-05 2.4E-10 80.2 12.7 106 196-320 290-395 (400)
194 KOG2550 IMP dehydrogenase/GMP 98.2 3.5E-06 7.7E-11 80.4 7.6 109 192-317 117-227 (503)
195 smart00116 CBS Domain in cysta 98.0 1.7E-05 3.7E-10 52.8 6.1 47 356-402 2-48 (49)
196 cd04597 CBS_pair_DRTGG_assoc2 98.0 1.1E-05 2.5E-10 65.5 5.6 50 351-400 63-112 (113)
197 cd04597 CBS_pair_DRTGG_assoc2 97.9 1.1E-05 2.4E-10 65.5 4.4 54 54-117 58-111 (113)
198 smart00116 CBS Domain in cysta 97.8 6E-05 1.3E-09 50.0 6.1 46 66-119 2-47 (49)
199 KOG0475 Cl- channel CLC-3 and 97.8 0.0003 6.5E-09 71.1 11.9 140 175-317 539-694 (696)
200 KOG0475 Cl- channel CLC-3 and 97.4 0.0021 4.6E-08 65.2 12.2 138 63-240 555-694 (696)
201 COG4175 ProV ABC-type proline/ 97.2 0.001 2.2E-08 62.6 7.3 149 215-405 233-385 (386)
202 TIGR03415 ABC_choXWV_ATP choli 97.2 0.0048 1E-07 61.1 11.9 83 289-404 298-381 (382)
203 COG4175 ProV ABC-type proline/ 94.9 0.06 1.3E-06 50.9 6.1 111 179-319 274-384 (386)
204 KOG0476 Cl- channel CLC-2 and 94.8 0.21 4.6E-06 52.2 10.2 64 178-245 587-651 (931)
205 TIGR03415 ABC_choXWV_ATP choli 94.6 0.19 4.1E-06 49.8 9.2 107 178-318 273-380 (382)
206 KOG0476 Cl- channel CLC-2 and 94.1 0.52 1.1E-05 49.4 11.0 66 51-124 585-650 (931)
207 KOG2118 Predicted membrane pro 89.5 0.69 1.5E-05 47.5 5.9 125 264-410 209-335 (498)
208 COG1125 OpuBA ABC-type proline 89.3 0.71 1.5E-05 42.6 5.2 116 270-401 189-308 (309)
209 COG1125 OpuBA ABC-type proline 84.4 1.3 2.8E-05 41.0 4.0 40 72-119 269-308 (309)
210 PRK11388 DNA-binding transcrip 77.6 9.1 0.0002 40.9 8.3 100 202-311 61-164 (638)
211 PRK11388 DNA-binding transcrip 67.9 12 0.00026 40.0 6.4 101 279-395 61-163 (638)
212 PRK10026 arsenate reductase; P 55.8 1.2E+02 0.0027 25.4 9.4 117 270-410 6-124 (141)
213 KOG2118 Predicted membrane pro 55.0 24 0.00051 36.5 5.5 127 176-318 201-328 (498)
214 PF05198 IF3_N: Translation in 48.9 43 0.00093 24.9 4.7 29 377-405 12-40 (76)
215 PF07629 DUF1590: Protein of u 31.7 22 0.00047 20.7 0.6 12 19-30 19-30 (32)
216 PF05198 IF3_N: Translation in 31.3 89 0.0019 23.2 4.0 30 291-321 12-41 (76)
217 PF14827 Cache_3: Sensory doma 29.3 55 0.0012 26.1 2.9 17 379-395 93-109 (116)
218 COG3284 AcoR Transcriptional a 27.2 1E+02 0.0022 32.4 4.9 149 202-396 29-179 (606)
219 PF13673 Acetyltransf_10: Acet 21.2 1.5E+02 0.0033 22.8 4.1 31 366-396 32-62 (117)
220 PF14044 NETI: NETI protein 21.2 1.3E+02 0.0028 20.9 2.9 24 271-296 2-25 (57)
221 PF14827 Cache_3: Sensory doma 21.1 69 0.0015 25.6 2.0 18 88-113 92-109 (116)
222 PF02743 Cache_1: Cache domain 20.5 1.8E+02 0.004 21.1 4.1 26 379-404 18-47 (81)
No 1
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.97 E-value=9.1e-29 Score=241.17 Aligned_cols=324 Identities=28% Similarity=0.439 Sum_probs=256.6
Q ss_pred HHhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcC
Q 014353 46 KLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSE 125 (426)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~ 125 (426)
.+.+.+....|....+...+++.++..+++.+|+..|..+.++++||+|... ++++|++++.|++..++..+.
T Consensus 58 ~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~-------~~~~g~~~~~d~i~~~~~~~~ 130 (381)
T KOG1764|consen 58 TLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKK-------QQFVGMLTITDFITVLLRYYK 130 (381)
T ss_pred HHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCcc-------ceeEEEEEHHHHHHHHHHhhc
Confidence 4666666666666666677999999999999999999999999999999886 899999999999999887653
Q ss_pred CCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHH
Q 014353 126 PPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTM 205 (426)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~ 205 (426)
.... .+.+..++.........+..+.....+.+++.+.+..++.++
T Consensus 131 ~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~ 176 (381)
T KOG1764|consen 131 SKSS----------------------------------LDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDA 176 (381)
T ss_pred cCCc----------------------------------HHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHHH
Confidence 2010 001111111112222233333333333355899999999999
Q ss_pred HHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHHHHHH
Q 014353 206 LLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKL 285 (426)
Q Consensus 206 l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~ 285 (426)
...+.++++|++||+|.+.+++.+++|+..+++++..+...-++..+...++.+++.+.+. .+..+..++++.+|+++
T Consensus 177 ~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~--~i~~i~~~~~v~~al~~ 254 (381)
T KOG1764|consen 177 VLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWS--NIASISEDTPVIEALKI 254 (381)
T ss_pred HHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhh--hheeecCCCcHHHHHHH
Confidence 9999999999999999767899999999999999987766555778888999998866554 49999999999999999
Q ss_pred HHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCH
Q 014353 286 MRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTI 365 (426)
Q Consensus 286 m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl 365 (426)
|..++++++||||..| +.+|+++..|+......+..+.. +... +.+..... ......+++|++++||
T Consensus 255 m~~~~is~lpvV~~~g-~~v~~~s~~Dv~~l~~~~~~~~~-------~~~~-l~~~~~~~----~~~~~~vvtc~~~ssL 321 (381)
T KOG1764|consen 255 MSERRISALPVVDENG-KKVGNYSRFDVIHLAREGTYNNL-------DLSC-LSEALSHR----PIRFEGVVTCRPTSTL 321 (381)
T ss_pred HHhcCcCcceEEcCCC-ceecceehhhhhhhhhcCccCcc-------chhH-HHHHhhhc----ccccCccEEEeecchH
Confidence 9999999999999998 77999999999999877654321 1111 33332221 1223358999999999
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCcccccccccccCCCCCC
Q 014353 366 KELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDGVLPLPENSR 425 (426)
Q Consensus 366 ~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~~~~~~~~~~~~~~~~~ 425 (426)
.+++.+|..+++||+||||++|+++|+||++|++.++..++.++....+++...-..+.|
T Consensus 322 ~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p~~~~~~~~~~~~~~~~~~~ 381 (381)
T KOG1764|consen 322 AEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTPSGGTPDAPSSSMSTSENPR 381 (381)
T ss_pred HHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCccCCCCCCcCccccccCCCC
Confidence 999999999999999999999999999999999999999999999999998887776654
No 2
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.95 E-value=4.9e-28 Score=217.38 Aligned_cols=168 Identities=23% Similarity=0.424 Sum_probs=148.2
Q ss_pred cCCCCCchhhccccccchhhhcCCC-----CChhH-----------HHhhhhccCCccCCCCCCCceEEEeCCCCHHHHH
Q 014353 16 QDSPRSPEAQLGMKVEDLWDVLEPQ-----LSPTE-----------KLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAV 79 (426)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~-----------~~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~ 79 (426)
-+.+|+|.+|.||+.+|+|++|+++ |+++| +|+|.++.++|.++ |+++|+++.+++++.+|+
T Consensus 191 gT~Dppp~~rvgfs~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadI--MSrdVvtv~~~ts~dhA~ 268 (382)
T COG3448 191 GTADPPPSQRVGFSSEDLDAALQRLGETLDIDRDDLERLLRETELQALRRRMGELTCADI--MSRDVVTVSTDTSIDHAR 268 (382)
T ss_pred CCCCCCchhccCCCHHHHHHHHHhcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHh--cCccceecCCcCChHHHH
Confidence 4567889999999999999999886 88874 58999999999999 999999999999999999
Q ss_pred HHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhcCccccccccCCCCcc
Q 014353 80 EILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESA 159 (426)
Q Consensus 80 ~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 159 (426)
++|.+|+++++||+|+. .+++||||++|++.. ..+ .
T Consensus 269 ~ll~~H~ikaLPV~d~~--------~rl~GiVt~~dl~~~----a~~-~------------------------------- 304 (382)
T COG3448 269 KLLQEHRIKALPVLDEH--------RRLVGIVTQRDLLKH----ARP-S------------------------------- 304 (382)
T ss_pred HHHHHcCcccccccccc--------cceeeeeeHHHHhhc----cCc-c-------------------------------
Confidence 99999999999999999 899999999999753 211 0
Q ss_pred cccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHH
Q 014353 160 SMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHM 239 (426)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~ 239 (426)
++ +.-......+++.+|++ ++.++.++++..+++..|.+.+.|++||+| +.|+++|||||+|++.+
T Consensus 305 ------p~---qrlr~~~~~~vk~imt~----~v~tv~pdtpa~~lvp~lad~g~H~lpvld-~~g~lvGIvsQtDliaa 370 (382)
T COG3448 305 ------PF---QRLRFLRPPTVKGIMTT----PVVTVRPDTPAVELVPRLADEGLHALPVLD-AAGKLVGIVSQTDLIAA 370 (382)
T ss_pred ------hH---HHhhccCCCcccccccC----cceeecCCCcHHHHHHHhhcCCcceeeEEc-CCCcEEEEeeHHHHHHH
Confidence 11 12224567789999998 999999999999999999999999999999 48999999999999999
Q ss_pred HHhc
Q 014353 240 LAEC 243 (426)
Q Consensus 240 l~~~ 243 (426)
+++.
T Consensus 371 l~r~ 374 (382)
T COG3448 371 LYRN 374 (382)
T ss_pred HHHH
Confidence 9754
No 3
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.76 E-value=7.8e-18 Score=149.44 Aligned_cols=124 Identities=32% Similarity=0.519 Sum_probs=109.7
Q ss_pred hccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccH
Q 014353 252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITA 331 (426)
Q Consensus 252 ~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~ 331 (426)
+...++.+ +|+++ ++++.+++++.++.++|.++++++.||+|++ +++|++|.+|+..++..+..
T Consensus 169 iPk~~V~~----~~s~~-~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d--k~vGiit~~dI~~aia~g~~--------- 232 (294)
T COG2524 169 IPKEKVKN----LMSKK-LITVRPDDTLREAAKLFYEKGIRGAPVVDDD--KIVGIITLSDIAKAIANGNL--------- 232 (294)
T ss_pred cCcchhhh----hccCC-ceEecCCccHHHHHHHHHHcCccCCceecCC--ceEEEEEHHHHHHHHHcCCc---------
Confidence 33466777 88875 9999999999999999999999999999984 89999999999999887642
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353 332 KNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH 404 (426)
Q Consensus 332 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~ 404 (426)
...++++|. ++++++++++.+.+|+++|..+++.++.|+|++|+++|+||++|||+.++.
T Consensus 233 ---~~kV~~~M~----------k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 233 ---DAKVSDYMR----------KNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG 292 (294)
T ss_pred ---cccHHHHhc----------cCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence 234555554 499999999999999999999999999999999999999999999999875
No 4
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.74 E-value=2.4e-17 Score=148.85 Aligned_cols=296 Identities=20% Similarity=0.234 Sum_probs=188.2
Q ss_pred CCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEE--------eehHHHHHHHHhhcCCCCCCCCCC
Q 014353 63 PSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGI--------VEFAGIAVWILHQSEPPSPRSSSP 134 (426)
Q Consensus 63 ~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGi--------vt~~di~~~l~~~~~~~~~~~~~~ 134 (426)
+.-++..=|+.++.+=|.++--|-+.++.=+-. ..++|= |++.=.+.+.+.+.- .++.
T Consensus 66 SAVLLFavpaSPLAQPwsiiGGNlvaAlvgvtv---------a~~vgd~~la~~lavsLaI~~M~~~rcLH-----PPsg 131 (382)
T COG3448 66 SAVLLFAVPASPLAQPWSIIGGNLVAALVGVTV---------AYFVGDPVLASGLAVSLAIGAMFALRCLH-----PPSG 131 (382)
T ss_pred ceEEEEeccCCccccchhhhcchHHHHHHhhhh---------hhhhCChHHHHHHHHHHHHHHHHHhcCCC-----CCch
Confidence 566777788999999999988887666543322 233330 111111222233332 4567
Q ss_pred chhHHHhhhcCc----ccc--ccccCCCCcccccccchhhcccccccccccchhhhccc-cccCCcEEecCCCCHHHHHH
Q 014353 135 SSALAAAVNGMS----KAA--LFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGS-FRWAPFLALQKSNSFLTMLL 207 (426)
Q Consensus 135 ~~~~~~~~~g~~----~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~-~~~~~~~~v~~~~~l~~~l~ 207 (426)
++++++...|-. +|+ ......++-....++..|.++.+ ..|+......-.+. ...+|.....-.-+-+|+-.
T Consensus 132 AvALtavlgGpav~~~g~~F~l~Pval~SliLv~~a~lynnl~~-r~YPh~~~~p~an~HgT~Dppp~~rvgfs~~Dld~ 210 (382)
T COG3448 132 AVALTAVLGGPAVHRLGYNFVLWPVALNSLILVGLALLYNNLTR-RTYPHHWLSPPANLHGTADPPPSQRVGFSSEDLDA 210 (382)
T ss_pred HHHHHHHhcCcccccCCCCceehhhhhhhHHHHHHHHHHHHHhc-CCCCCccCCCcccccCCCCCCchhccCCCHHHHHH
Confidence 888888777533 111 12222222222223334444332 22222111110000 00123333333334455555
Q ss_pred HHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHH
Q 014353 208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMR 287 (426)
Q Consensus 208 ~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~ 287 (426)
.+.+.+- .+| |++.|+-+.+.+-.............+.+ +|+++ +++++.++++.++.++|.
T Consensus 211 aL~~~~E----~lD---------IdrddLe~llr~~elqa~~R~~~~Ltcad----IMSrd-Vvtv~~~ts~dhA~~ll~ 272 (382)
T COG3448 211 ALQRLGE----TLD---------IDRDDLERLLRETELQALRRRMGELTCAD----IMSRD-VVTVSTDTSIDHARKLLQ 272 (382)
T ss_pred HHHhcCc----eec---------CCHHHHHHHHHHHHHHHHHHHhccccHHH----hcCcc-ceecCCcCChHHHHHHHH
Confidence 5544332 355 55667655554433333334455677888 99986 999999999999999999
Q ss_pred hcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHH
Q 014353 288 RKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKE 367 (426)
Q Consensus 288 ~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~ 367 (426)
+++++++||+|++. +++|+|+.+|+.+....+ +...++ ++.. ..+..+|+.++.++.++++..+
T Consensus 273 ~H~ikaLPV~d~~~-rl~GiVt~~dl~~~a~~~-------------p~qrlr-~~~~-~~vk~imt~~v~tv~pdtpa~~ 336 (382)
T COG3448 273 EHRIKALPVLDEHR-RLVGIVTQRDLLKHARPS-------------PFQRLR-FLRP-PTVKGIMTTPVVTVRPDTPAVE 336 (382)
T ss_pred HcCccccccccccc-ceeeeeeHHHHhhccCcc-------------hHHHhh-ccCC-CcccccccCcceeecCCCcHHH
Confidence 99999999999987 999999999999875431 112223 2222 3677899999999999999999
Q ss_pred HHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCC
Q 014353 368 LIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPP 407 (426)
Q Consensus 368 ~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~ 407 (426)
++-.+.+.+.|++||+|++|+++||||++|++.+++.+..
T Consensus 337 lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~~ 376 (382)
T COG3448 337 LVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNWS 376 (382)
T ss_pred HHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987643
No 5
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.70 E-value=1.4e-16 Score=141.55 Aligned_cols=126 Identities=25% Similarity=0.424 Sum_probs=115.2
Q ss_pred cccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhh
Q 014353 173 SEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESW 252 (426)
Q Consensus 173 ~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~ 252 (426)
-...+..++.++|++ +++++.+++++.++..+|.+++++..||+| +++++|++|.+|+..++.++..
T Consensus 166 m~siPk~~V~~~~s~----~~i~v~~d~tl~eaak~f~~~~i~GaPVvd--~dk~vGiit~~dI~~aia~g~~------- 232 (294)
T COG2524 166 MVSIPKEKVKNLMSK----KLITVRPDDTLREAAKLFYEKGIRGAPVVD--DDKIVGIITLSDIAKAIANGNL------- 232 (294)
T ss_pred eeecCcchhhhhccC----CceEecCCccHHHHHHHHHHcCccCCceec--CCceEEEEEHHHHHHHHHcCCc-------
Confidence 345777899999998 999999999999999999999999999999 4599999999999999987632
Q ss_pred ccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353 253 GKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT 318 (426)
Q Consensus 253 ~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~ 318 (426)
...+++ +|+++ ++++..++.+.||+++|..++++++.|+|.+| +++|+||+.|++..+.
T Consensus 233 -~~kV~~----~M~k~-vitI~eDe~i~dAir~M~~~nVGRLlV~ds~g-kpvGiITrTDIL~~ia 291 (294)
T COG2524 233 -DAKVSD----YMRKN-VITINEDEDIYDAIRLMNKNNVGRLLVTDSNG-KPVGIITRTDILTRIA 291 (294)
T ss_pred -cccHHH----HhccC-CceEcCchhHHHHHHHHHhcCcceEEEEccCC-cEEEEEehHHHHHHhh
Confidence 367888 89986 99999999999999999999999999999888 9999999999998764
No 6
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.69 E-value=2.1e-16 Score=163.97 Aligned_cols=305 Identities=15% Similarity=0.177 Sum_probs=193.4
Q ss_pred CCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCC
Q 014353 54 IPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSS 133 (426)
Q Consensus 54 ~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~ 133 (426)
.++.++ |.++++++++++++.+|+++|.+++++.+||+|++ |+++|+|+..|+..+++...+....+...
T Consensus 68 ~~V~di--m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--------g~l~Givt~~di~~~~~~~~~~~~~~~~~ 137 (546)
T PRK14869 68 PQVRDL--EIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE--------GKLLGLVSLSDLARAYMDILDPEILSKSP 137 (546)
T ss_pred CcHHHh--cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CEEEEEEEHHHHHHHHHhhcchhhhhhcC
Confidence 567777 88899999999999999999999999999999988 89999999999999887644211111111
Q ss_pred CchhHHHhhhcCccccccccC-CCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhc
Q 014353 134 PSSALAAAVNGMSKAALFKDL-GPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKY 212 (426)
Q Consensus 134 ~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~ 212 (426)
+....++...+.. .+ +........+.+ .........+......+.++.+... .+.+..+.+.
T Consensus 138 ~t~~~i~~~L~~~------~l~~~~~~~~~~~~~--------~v~a~~~~~~~~~~~~~~lvi~gdr---~d~~~~ai~~ 200 (546)
T PRK14869 138 TSLENIIRTLDGE------VLVGAEEDKVEEGKV--------VVAAMAPESLLERIEEGDIVIVGDR---EDIQLAAIEA 200 (546)
T ss_pred CCHHHHHHhcCcE------EEecCcccccccccE--------EEEEcCHHHHHHhccCCCEEEEcCc---HHHHHHHHHc
Confidence 1111111111110 00 000000000000 0000011112222222345555433 3445567888
Q ss_pred CCcEeEEEeCC-----------CCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcc-cCCeeEeCCCCcHH
Q 014353 213 KMKSIPVVDLG-----------EGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMS-ANHIVKVYEDEPVL 280 (426)
Q Consensus 213 ~~~~ipVvd~~-----------~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~-~~~~~~v~~~~~v~ 280 (426)
++.+++|+... ...+.++.|..|.+........ ..++.+ +|+ .+ ++++.+++++.
T Consensus 201 ~~~~lIlt~g~~~~~~v~~la~~~~i~ii~t~~dt~~t~~~l~~--------~~~V~~----iM~~~~-~~~~~~~~~~~ 267 (546)
T PRK14869 201 GVRLLIITGGAPVSEDVLELAKENGVTVISTPYDTFTTARLINQ--------SIPVSY----IMTTED-LVTFSKDDYLE 267 (546)
T ss_pred CCCEEEECCCCCCCHHHHHHHHhCCCeEEEecccHHHHHHHhhc--------CCCHHH----hccCCC-cEEECCCCcHH
Confidence 99999887521 2358899999998888754321 457888 898 54 99999999999
Q ss_pred HHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccc-ccccccc-HHHHH-HHHHHHhhhcCCCCCCCcCCce
Q 014353 281 QAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY-HDYRSIT-AKNFL-TAVRKYMEEHHHEDSPLLSGMV 357 (426)
Q Consensus 281 ~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~-~~~~~~~-~~~~~-~~v~~~~~~~~~~~~~~~~~~~ 357 (426)
++.+.|.+++++.+||+|++| +++|+||.+|++......-.. +...... ..... ..+.+++. ++..++++...++
T Consensus 268 ~~~~~m~~~~~~~~PVvd~~g-~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~~~~~~i~~iiD-HH~~~~~~~~~pi 345 (546)
T PRK14869 268 DVKEVMLKSRYRSYPVVDEDG-KVVGVISRYHLLSPVRKKVILVDHNEKSQAVEGIEEAEILEIID-HHRLGDIQTSNPI 345 (546)
T ss_pred HHHHHHHhcCCCceEEEcCCC-CEEEEEEHHHhhccccCceEEEcCccccccccchhhceEEEEec-CCccCCCCCCCCc
Confidence 999999999999999999988 999999999999875432110 1000000 00000 00111121 2245566766766
Q ss_pred ee---cCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 014353 358 TC---SRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR 401 (426)
Q Consensus 358 ~v---~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~ 401 (426)
.+ +...+...+.++|.+.++...+++. ...+.||+|-++.++.
T Consensus 346 ~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 346 FFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDTLLFKS 391 (546)
T ss_pred EEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhcCccC
Confidence 55 5578888999999999988877775 3468888888877653
No 7
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.62 E-value=5.8e-15 Score=117.45 Aligned_cols=93 Identities=26% Similarity=0.386 Sum_probs=86.1
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE 348 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 348 (426)
++++.+++++.++.+.|.+++++++||+|++ + +++|+||..|+.+.+.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~-~~~Givt~~Dl~~~~~------------------------------ 51 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQ-QFVGMLTITDFILILR------------------------------ 51 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeCCCC-EEEEEEEHHHHhhhee------------------------------
Confidence 7899999999999999999999999999975 6 9999999999986521
Q ss_pred CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHH
Q 014353 349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFN-GNLEGVITLRDIIS 400 (426)
Q Consensus 349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~-~~liGvIT~~Dll~ 400 (426)
+.++.+++++.++++.|.+++++++||+|++ |+++|+||.+|+++
T Consensus 52 -------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 -------LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred -------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 5799999999999999999999999999987 89999999999985
No 8
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.61 E-value=2.5e-14 Score=140.07 Aligned_cols=200 Identities=21% Similarity=0.268 Sum_probs=153.3
Q ss_pred CCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhh
Q 014353 63 PSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAV 142 (426)
Q Consensus 63 ~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~ 142 (426)
.++++.+.+..++.+|...|.+++++.+||.|.++ +.+++++|.+-|++++......-
T Consensus 161 ~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~-------~~v~~ilt~~rIl~~l~~~~~~~--------------- 218 (381)
T KOG1764|consen 161 KPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPET-------GEVLYILTQRRILKFLWLNGRLL--------------- 218 (381)
T ss_pred CCCceeecCcHHHHHHHHHHHhCCccceeeecccc-------cceeeehhHHHHHHHHHHhhccc---------------
Confidence 44559999999999999999999999999999655 89999999999999987543110
Q ss_pred hcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeC
Q 014353 143 NGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDL 222 (426)
Q Consensus 143 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~ 222 (426)
..+.+...++.++-- ..|..+..+..++++.++++.|.++++..+||++.
T Consensus 219 -----------------------------~~~~~l~~s~~dl~i-g~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~ 268 (381)
T KOG1764|consen 219 -----------------------------PLPSLLSKSLSDLGI-GTWSNIASISEDTPVIEALKIMSERRISALPVVDE 268 (381)
T ss_pred -----------------------------ccHHHhhCCHHHhCc-chhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC
Confidence 011222334444322 23446888999999999999999999999999995
Q ss_pred CCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccc-cCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCC
Q 014353 223 GEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIG-LPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGG 301 (426)
Q Consensus 223 ~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~-~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~ 301 (426)
.|..+|+++..|+................ +.... ..-...+++++|.++.++.+++..|..+++++++|||++|
T Consensus 269 -~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~----l~~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~ 343 (381)
T KOG1764|consen 269 -NGKKVGNYSRFDVIHLAREGTYNNLDLSC----LSEALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDG 343 (381)
T ss_pred -CCceecceehhhhhhhhhcCccCccchhH----HHHHhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCC
Confidence 77779999999998887654322111110 11110 0012234589999999999999999999999999999988
Q ss_pred CeEEEEEeHHHHHHHhhCC
Q 014353 302 NKAVGNISLRDIQFLLTAP 320 (426)
Q Consensus 302 ~~lvGiIs~~Dl~~~~~~~ 320 (426)
.++|+||.+|++.++...
T Consensus 344 -~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 344 -VLVGVISLSDILSYLVLT 361 (381)
T ss_pred -cEEEEeeHHHHHHHHHhC
Confidence 999999999999998643
No 9
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.60 E-value=1.5e-14 Score=119.22 Aligned_cols=118 Identities=27% Similarity=0.524 Sum_probs=94.5
Q ss_pred CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE 348 (426)
Q Consensus 269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 348 (426)
++.++.+++++.++++.|.+++++.+||+|++| +++|+++.+|++.+...+... .. ..+ +.+.+. .
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~-~~~Giv~~~dl~~~~~~~~~~-~~-~~~-------~~~~~~----~ 67 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENG-KVVDVYSRFDVINLAKEGAYN-NL-DLT-------VGEALE----R 67 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCC-eEEEEEeHHHHHHHHhcCccc-cc-cCC-------HHHHHh----h
Confidence 378999999999999999999999999999887 999999999999875433210 00 011 111111 1
Q ss_pred CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
...|..++.++.+++++.++++.|.+++.+++||+|++|+++|+||++|+++
T Consensus 68 ~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 68 RSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred cccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 1234557899999999999999999999999999998899999999999986
No 10
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.58 E-value=4.6e-14 Score=116.47 Aligned_cols=137 Identities=29% Similarity=0.399 Sum_probs=107.7
Q ss_pred HHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHH
Q 014353 233 QSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRD 312 (426)
Q Consensus 233 ~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~D 312 (426)
...++++|.++... ...+.. +|+. +++.|.+++++.++.++|.++|++++||+++ + +++|-||.+|
T Consensus 50 ~k~Il~aL~e~e~~-------~ita~~----iM~s-pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~-k~VGsItE~~ 115 (187)
T COG3620 50 VKRILEALEEAEKT-------RITAKT----IMHS-PVVSVSPDDSISDVVNLMRDKGISQLPVIEE-D-KVVGSITEND 115 (187)
T ss_pred HHHHHHHHHHhhcc-------eEeHhh----hccC-CeeEECchhhHHHHHHHHHHcCCccCceeeC-C-eeeeeecHHH
Confidence 34555565544331 234455 8886 4999999999999999999999999999998 5 9999999999
Q ss_pred HHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEE
Q 014353 313 IQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGV 392 (426)
Q Consensus 313 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGv 392 (426)
|.+++..+. .. -....++++|.+ +..++++++++..+-+++..++ .+.|+ ++|+++|+
T Consensus 116 iv~~~le~~--e~-------i~~~~vr~vM~e----------~fP~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGI 173 (187)
T COG3620 116 IVRALLEGM--ES-------IRSLRVREVMGE----------PFPTVSPDESLNVISQLLEEHP--AVLVV-ENGKVVGI 173 (187)
T ss_pred HHHHHhccc--cc-------hhhhhHHHHhcC----------CCCcCCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEE
Confidence 999976542 11 123456777766 8999999999999998888775 46677 57999999
Q ss_pred EeHHHHHHHHHhC
Q 014353 393 ITLRDIISRLVHE 405 (426)
Q Consensus 393 IT~~Dll~~l~~~ 405 (426)
||+.||++.+.+.
T Consensus 174 ITk~DI~k~~~~~ 186 (187)
T COG3620 174 ITKADIMKLLAGT 186 (187)
T ss_pred EeHHHHHHHHhcc
Confidence 9999999988753
No 11
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=3.3e-14 Score=115.57 Aligned_cols=108 Identities=20% Similarity=0.345 Sum_probs=91.1
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
++++.+++++.++++.|.+.+.+.++|+|+++ +++|+|+..|+.+... .. +. ..++.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~-~~~G~v~~~dl~~~~~-~~----~~-------~~~v~---------- 59 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVVDEEN-KVLGQVTLSDLLEIGP-ND----YE-------TLKVC---------- 59 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCC-CEEEEEEHHHHHhhcc-cc----cc-------ccChh----------
Confidence 78899999999999999999999999999887 9999999999987421 11 00 01233
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
++|..++.++.+++++.+++++|.+++.+++||+|++|+++|+||.+|+++
T Consensus 60 ~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 60 EVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred heeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 344457889999999999999999999999999998899999999999986
No 12
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.56 E-value=5.2e-14 Score=116.18 Aligned_cols=121 Identities=25% Similarity=0.464 Sum_probs=104.0
Q ss_pred cCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCC
Q 014353 53 SIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSS 132 (426)
Q Consensus 53 ~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~ 132 (426)
.++|..+ |+++++.+.|++++.+|+++|+++++..+||+++ ++++|-||..+|.+..++..
T Consensus 64 ~ita~~i--M~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~---------~k~VGsItE~~iv~~~le~~-------- 124 (187)
T COG3620 64 RITAKTI--MHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE---------DKVVGSITENDIVRALLEGM-------- 124 (187)
T ss_pred eEeHhhh--ccCCeeEECchhhHHHHHHHHHHcCCccCceeeC---------CeeeeeecHHHHHHHHhccc--------
Confidence 5677777 9999999999999999999999999999999999 59999999999999877542
Q ss_pred CCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhc
Q 014353 133 SPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKY 212 (426)
Q Consensus 133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~ 212 (426)
+.....+++++|+. +|.+++++.++.-.-.++-
T Consensus 125 -----------------------------------------e~i~~~~vr~vM~e----~fP~Vs~~~~l~vI~~LL~-- 157 (187)
T COG3620 125 -----------------------------------------ESIRSLRVREVMGE----PFPTVSPDESLNVISQLLE-- 157 (187)
T ss_pred -----------------------------------------cchhhhhHHHHhcC----CCCcCCCCCCHHHHHHHHh--
Confidence 12335689999997 9999999999987777774
Q ss_pred CCcEeEEEeCCCCeEEEEEeHHHHHHHHH
Q 014353 213 KMKSIPVVDLGEGTIDNIITQSSVIHMLA 241 (426)
Q Consensus 213 ~~~~ipVvd~~~~~l~Giis~~Dl~~~l~ 241 (426)
...++.|++ +|+++||||..|+++.+.
T Consensus 158 ~~~AVlV~e--~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 158 EHPAVLVVE--NGKVVGIITKADIMKLLA 184 (187)
T ss_pred hCCeEEEEe--CCceEEEEeHHHHHHHHh
Confidence 446677776 899999999999998875
No 13
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.56 E-value=5.6e-14 Score=114.78 Aligned_cols=111 Identities=20% Similarity=0.300 Sum_probs=93.0
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++.+++++.++++.|.+.++..+||+|++| +++|+++.+|+.+........ ....++.+++.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g-~~~G~vt~~dl~~~~~~~~~~---------~~~~~v~~~~~------ 66 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHG-KLAGVLTKTDVVRQMGRCGGP---------GCTAPVENVMT------ 66 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCC-CEEEEEehHHHHHHHhhcCCC---------cccCCHHHHhc------
Confidence 77889999999999999999999999999888 999999999998765321100 01123444443
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
.++.++.+++++.++++.|.+++.+++||+|++|+++|+||.+|+++
T Consensus 67 ----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 67 ----RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred ----CCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 38899999999999999999999999999998899999999999975
No 14
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.55 E-value=7.6e-14 Score=138.89 Aligned_cols=131 Identities=20% Similarity=0.300 Sum_probs=110.8
Q ss_pred hccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccccc
Q 014353 252 WGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT 330 (426)
Q Consensus 252 ~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~ 330 (426)
+.+.++++ +|++ .++++++.++++.++++.+.+++++++||++++.++++|+++.+|++...... ..
T Consensus 188 l~~~~v~d----iMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~-------~~- 255 (408)
T TIGR03520 188 FGNTDTKQ----VMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK-------NF- 255 (408)
T ss_pred cCCCEeee----eCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC-------CC-
Confidence 44677888 8997 45999999999999999999999999999987645899999999998764321 01
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCcc
Q 014353 331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYF 410 (426)
Q Consensus 331 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~~ 410 (426)
.+.+++ +++.+++++.++.++++.|.+++.|.++|+|+.|.++|+||++||+..+++++....
T Consensus 256 ------~l~~~~-----------~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~ 318 (408)
T TIGR03520 256 ------DWQSLL-----------REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEF 318 (408)
T ss_pred ------CHHHHc-----------CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcC
Confidence 123332 267899999999999999999999999999999999999999999999999887655
Q ss_pred c
Q 014353 411 G 411 (426)
Q Consensus 411 ~ 411 (426)
+
T Consensus 319 d 319 (408)
T TIGR03520 319 D 319 (408)
T ss_pred C
Confidence 4
No 15
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.54 E-value=7.9e-14 Score=110.40 Aligned_cols=93 Identities=25% Similarity=0.463 Sum_probs=86.2
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
++++.+++++.++++.|.+.+++.+||+|++| +++|+++.+|+....
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~-~~~Giv~~~dl~~~~-------------------------------- 49 (96)
T cd04614 3 VPTVWEETPLPVAVRIMELANVKALPVLDDDG-KLSGIITERDLIAKS-------------------------------- 49 (96)
T ss_pred ccEeCCCCcHHHHHHHHHHcCCCeEEEECCCC-CEEEEEEHHHHhcCC--------------------------------
Confidence 78899999999999999999999999999887 999999999997642
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
.+.++.+++++.++++.|.+++.+++||+|++|+++|+||++|+++
T Consensus 50 -----~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 50 -----EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred -----CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1579999999999999999999999999998899999999999986
No 16
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.54 E-value=1.4e-13 Score=130.91 Aligned_cols=133 Identities=14% Similarity=0.337 Sum_probs=110.4
Q ss_pred hccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccccc
Q 014353 252 WGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT 330 (426)
Q Consensus 252 ~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~ 330 (426)
+...++++ +|++ .+++++..++++.++++.+.+.+++++||++++.++++|+|+.+|++.....+.. ..
T Consensus 64 l~~~~V~d----iMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~-----~~- 133 (292)
T PRK15094 64 IADQRVRD----IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE-----AF- 133 (292)
T ss_pred cCCCEEeE----EccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCC-----cC-
Confidence 44677888 8987 2599999999999999999999999999999763489999999999876432110 00
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCcc
Q 014353 331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYF 410 (426)
Q Consensus 331 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~~ 410 (426)
.+.+++. ++.+++++.++.++++.|.+++.|.++|+|+.|.++|+||+.||+..+.+++...+
T Consensus 134 ------~l~~l~r-----------~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~ 196 (292)
T PRK15094 134 ------SMDKVLR-----------QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEY 196 (292)
T ss_pred ------CHHHHcC-----------CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCcccc
Confidence 1333332 56799999999999999999999999999999999999999999999999987765
Q ss_pred c
Q 014353 411 G 411 (426)
Q Consensus 411 ~ 411 (426)
+
T Consensus 197 d 197 (292)
T PRK15094 197 D 197 (292)
T ss_pred c
Confidence 4
No 17
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.54 E-value=7.5e-14 Score=115.54 Aligned_cols=122 Identities=25% Similarity=0.347 Sum_probs=95.4
Q ss_pred CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE 348 (426)
Q Consensus 269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 348 (426)
++.++.+++++.++.+.|.+.+++++||+|++| +++|+++.+|++..+............+ .......+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~Giv~~~~l~~~~~~~~~~~~~~~~~----------~~~~~~~i 71 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDR-RLVGIVTQRDLLRHARPDGRRPLRGRLR----------GRDKPETV 71 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEECCCC-CEEEEEEHHHHHhhhcccccchhhhhhh----------cccccccH
Confidence 378999999999999999999999999999877 9999999999988764322110000000 00011123
Q ss_pred CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 014353 349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR 401 (426)
Q Consensus 349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~ 401 (426)
.++|...+.++.+++++.++++.|.+++.+++||+|++|+++|+||..|++++
T Consensus 72 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 72 GDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred HHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence 34455589999999999999999999999999999988999999999999863
No 18
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.54 E-value=1.5e-13 Score=114.28 Aligned_cols=123 Identities=42% Similarity=0.650 Sum_probs=95.1
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++.+++++.++++.|.+++++++||+|+++ +++|+++..|+++....+.... ..+...+. .+........
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~-~~~Giv~~~dl~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~ 74 (126)
T cd04642 3 VVSIDSDERVLDAFKLMRKNNISGLPVVDEKG-KLIGNISASDLKGLLLSPDDLL---LYRTITFK----ELSEKFTDSD 74 (126)
T ss_pred eEEECCCccHHHHHHHHHHhCCCcccEECCCC-cEEEEEEHHHhhhhhcCcchhh---cccchhhh----hhhhhccccc
Confidence 78899999999999999999999999999887 9999999999998754321100 00000000 0001111222
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
..+..++.++.+++++.++++.|.+++.+++||+|++|+++|+||.+||++
T Consensus 75 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred ccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 355668999999999999999999999999999998899999999999986
No 19
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=1.8e-13 Score=113.26 Aligned_cols=118 Identities=21% Similarity=0.323 Sum_probs=91.9
Q ss_pred CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCC
Q 014353 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHH 347 (426)
Q Consensus 269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 347 (426)
++.++.+++++.++++.|.+.+++++||+|++ + +++|+|+.+|+++.+..+... .+..+..... ...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~-~~~Giv~~~dl~~~~~~~~~~-----~~~~~~~~~~------~~~ 69 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESG-EVIGILSQRRLVEFLWENARS-----FPGLDPLYPI------PLR 69 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCC-cEEEEEEHHHHHHHHHHhHHh-----ccchhhhhhh------hhh
Confidence 47889999999999999999999999999987 7 999999999999875432100 0000000000 001
Q ss_pred CCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHH
Q 014353 348 EDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDI 398 (426)
Q Consensus 348 ~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dl 398 (426)
....|..++.++++++++.+|++.|.+++.+++||+|++|+++|+||++||
T Consensus 70 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di 120 (123)
T cd04627 70 DLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV 120 (123)
T ss_pred hcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence 123455688999999999999999999999999999988999999999997
No 20
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.52 E-value=1.3e-13 Score=113.32 Aligned_cols=113 Identities=21% Similarity=0.235 Sum_probs=92.0
Q ss_pred CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE 348 (426)
Q Consensus 269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 348 (426)
++.++.+++++.++++.|.+++..++||+|+++ +++|+|+..|+.+....... +. ..++.++|..
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~-~~~Givt~~dl~~~~~~~~~---~~-------~~~~~~~~~~---- 66 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDG-DLVGVVSRKDLLKASIGGAD---LQ-------KVPVGVIMTR---- 66 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-CEEEEEEHHHHHHHHHcCCC---cc-------CCCHHHHhCC----
Confidence 378999999999999999999999999999887 99999999999987642210 00 1123333321
Q ss_pred CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCC---CcEEEEEeHHHHHH
Q 014353 349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFN---GNLEGVITLRDIIS 400 (426)
Q Consensus 349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~---~~liGvIT~~Dll~ 400 (426)
..++.++++++++.+++++|.+++++++||+|++ |+++|+||.+||++
T Consensus 67 ----~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 67 ----MPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred ----CCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 0267899999999999999999999999999987 69999999999875
No 21
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=2.3e-13 Score=110.97 Aligned_cols=110 Identities=26% Similarity=0.358 Sum_probs=91.9
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE 348 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 348 (426)
++++.+++++.++++.|.+.+++.+||+|++ + +++|+++.+|+++.+...+. . ....++.+++.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~-~~~G~v~~~dl~~~~~~~~~--~-------~~~~~v~~~~~----- 67 (114)
T cd04630 3 VVTIDGLATVAEALQLMKEHGVSSLVVEKRRES-DAYGIVTMRDILKKVVAEGR--D-------PDRVNVYEIMT----- 67 (114)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCEEEEEECCCC-cEEEEEehHHHHHHHHhCCC--C-------CCccCHHHHhc-----
Confidence 7889999999999999999999999999987 7 99999999999986543211 0 00123444443
Q ss_pred CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
.++.++++++++.++++.|.+++.+.+||+|+ |+++|+||..|+++
T Consensus 68 -----~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 68 -----KPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred -----CCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 37899999999999999999999999999997 99999999999986
No 22
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.51 E-value=2.5e-13 Score=108.00 Aligned_cols=95 Identities=18% Similarity=0.294 Sum_probs=85.1
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
.++++.+++++.++.+.|.+++++++||+|+++++++|++|..|+.+.+. +.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~----------------------------~~ 53 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR----------------------------LV 53 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee----------------------------eE
Confidence 56789999999999999999999999999953589999999999865321 67
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQF 315 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~ 315 (426)
++.+++++.++++.|.+++++++||+|++ | +++|+|+.+|+++
T Consensus 54 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~-~~~giit~~d~~~ 97 (98)
T cd04618 54 SIHPERSLFDAALLLLKNKIHRLPVIDPSTG-TGLYILTSRRILK 97 (98)
T ss_pred EeCCCCcHHHHHHHHHHCCCCEeeEEECCCC-CceEEeehhhhhc
Confidence 89999999999999999999999999987 7 9999999999975
No 23
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.50 E-value=2.9e-13 Score=110.51 Aligned_cols=110 Identities=23% Similarity=0.318 Sum_probs=92.2
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++.+++++.++++.|.+.+++.+||+|+++ +++|+++.+|+.+......... ..++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~-~~~G~v~~~dl~~~~~~~~~~~----------~~~~~~~-------- 63 (115)
T cd04593 3 PPVLSATTPLREAAEQLIESKHGSALVVDRDG-GVVGIITLPDLLRALEADEAGE----------PSAVDEV-------- 63 (115)
T ss_pred CcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCC-CEEEEEEHHHHHHHHhcccccc----------cccHHHh--------
Confidence 67889999999999999999999999999887 9999999999998764321100 0113333
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCC--CcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFN--GNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~--~~liGvIT~~Dll~ 400 (426)
|..++.++.+++++.++++.|.+++.+++||+|++ |+++|+||.+|+++
T Consensus 64 --~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 64 --ATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred --ccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 34488999999999999999999999999999987 79999999999986
No 24
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=3.1e-13 Score=109.97 Aligned_cols=109 Identities=22% Similarity=0.373 Sum_probs=92.1
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++.+++++.++++.|.+.+++.++|+|+++ +++|+++.+|+.+.+..+.. +..++.+++.
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~G~v~~~dl~~~~~~~~~-----------~~~~v~~~~~------ 65 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDENG-RLLGTVTDGDIRRALLKGLS-----------LDDPVSEVMN------ 65 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCCC-CEEEEEEcHHHHHHHhcCCC-----------cCCCHHHhhc------
Confidence 67889999999999999999999999999887 99999999999876543211 1122444443
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
.++.++.+++++.++++.|.+++.+++||+|++|+++|+||.+||+.
T Consensus 66 ----~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 66 ----RNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred ----CCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 37889999999999999999999999999998899999999999974
No 25
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.50 E-value=7.3e-14 Score=116.12 Aligned_cols=113 Identities=19% Similarity=0.308 Sum_probs=93.0
Q ss_pred CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE 348 (426)
Q Consensus 269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 348 (426)
++.++.+++++.++++.|.+++++++||+|+++ +++|+++.+|+++.+..+.. +...++.++|..
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~-~~~Gii~~~dl~~~~~~~~~----------~~~~~v~~im~~---- 67 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESG-KILGMVTLGNLLSSLSSGKV----------QPSDPVSKALYK---- 67 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-CEEEEEEHHHHHHHHHHhcc----------CCCCcHHHHhhc----
Confidence 378999999999999999999999999999887 99999999999976543211 112245555544
Q ss_pred CCCCcCCceeecCCCCHHHHHHHHH---------hCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 014353 349 DSPLLSGMVTCSRNHTIKELIHLLD---------SKKIHRIYVVDFNGNLEGVITLRDIISRL 402 (426)
Q Consensus 349 ~~~~~~~~~~v~~~~tl~~~~~~m~---------~~~~~~l~Vvd~~~~liGvIT~~Dll~~l 402 (426)
++.++.+++++.++.++|. +.+.+++||+|++|+++|+||..||++++
T Consensus 68 ------~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 68 ------QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred ------cceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence 8999999999999999653 34688899999889999999999999864
No 26
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.50 E-value=5.6e-13 Score=138.46 Aligned_cols=195 Identities=16% Similarity=0.181 Sum_probs=137.9
Q ss_pred cchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhh-------
Q 014353 179 TKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFES------- 251 (426)
Q Consensus 179 ~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~------- 251 (426)
.++.++|.. ++.++.+++++.+++..|.+++++.+||+| ++++++|+++..|+.+.+........+..
T Consensus 68 ~~V~dim~~----~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~ 142 (546)
T PRK14869 68 PQVRDLEID----KPVTVSPDTSLKEAWNLMDENNVKTLPVVD-EEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN 142 (546)
T ss_pred CcHHHhcCC----CCcEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence 579999987 889999999999999999999999999999 47999999999999987754321100000
Q ss_pred ----hcc----------ccccccc---------cCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCC-------
Q 014353 252 ----WGK----------KKLSEIG---------LPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGG------- 301 (426)
Q Consensus 252 ----~~~----------~~v~~~~---------~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~------- 301 (426)
+.. ....++. ...+.+..++.+.....+ ...+.+.++++++|+.+..
T Consensus 143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~---~~~ai~~~~~~lIlt~g~~~~~~v~~ 219 (546)
T PRK14869 143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDI---QLAAIEAGVRLLIITGGAPVSEDVLE 219 (546)
T ss_pred HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHH---HHHHHHcCCCEEEECCCCCCCHHHHH
Confidence 000 0000100 012344345555443333 3356888999998886531
Q ss_pred ----CeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCc-CCceeecCCCCHHHHHHHHHhCC
Q 014353 302 ----NKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLL-SGMVTCSRNHTIKELIHLLDSKK 376 (426)
Q Consensus 302 ----~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~tl~~~~~~m~~~~ 376 (426)
..+.++.|..|.......- ....++.++|. +++.++++++++.++.+.|.+++
T Consensus 220 la~~~~i~ii~t~~dt~~t~~~l----------------------~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~ 277 (546)
T PRK14869 220 LAKENGVTVISTPYDTFTTARLI----------------------NQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSR 277 (546)
T ss_pred HHHhCCCeEEEecccHHHHHHHh----------------------hcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcC
Confidence 1356666666665553211 11224444555 58999999999999999999999
Q ss_pred CcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353 377 IHRIYVVDFNGNLEGVITLRDIISRLV 403 (426)
Q Consensus 377 ~~~l~Vvd~~~~liGvIT~~Dll~~l~ 403 (426)
.+++||+|++|+++|+||.+|+++...
T Consensus 278 ~~~~PVvd~~g~lvGiit~~dl~~~~~ 304 (546)
T PRK14869 278 YRSYPVVDEDGKVVGVISRYHLLSPVR 304 (546)
T ss_pred CCceEEEcCCCCEEEEEEHHHhhcccc
Confidence 999999999999999999999998653
No 27
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=6.5e-13 Score=109.43 Aligned_cols=116 Identities=19% Similarity=0.293 Sum_probs=92.0
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccc-c-ccCCcccCC
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSE-I-GLPIMSANH 269 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~-~-~~~im~~~~ 269 (426)
++.++.+++++.+++..|.+++.+++||+|. +++++|+++..|++.++..+..... ..++.+ + ....|.. +
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~ 74 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAYNNL-----DLTVGEALERRSQDFE-G 74 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCccccc-----cCCHHHHHhhcccCCC-C
Confidence 6778999999999999999999999999994 8999999999999987643321100 011111 0 0013433 3
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
+.++.+++++.++++.|.+++.+.+||+|++| +++|+||.+|++.
T Consensus 75 ~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~-~~~Givt~~di~~ 119 (120)
T cd04641 75 VRTCSPDDCLRTIFDLIVKARVHRLVVVDENK-RVEGIISLSDILQ 119 (120)
T ss_pred CeEEcCCCcHHHHHHHHHhcCccEEEEECCCC-CEEEEEEHHHhhc
Confidence 78999999999999999999999999999887 9999999999975
No 28
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.48 E-value=7.7e-13 Score=107.53 Aligned_cols=110 Identities=25% Similarity=0.324 Sum_probs=91.9
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++.+++++.++++.|.+.+.+.+||+|+++ +++|+++.+|+.+.....+.+. . .++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~-~~~G~v~~~dl~~~~~~~~~~~---~-------~~i~~~~------- 64 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKK-RLVGIITRYDVLSYALESEELK---D-------AKVREVM------- 64 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCC-CEEEEEEHHHHHHhhhhhhhhc---C-------CcHHHhc-------
Confidence 67889999999999999999999999999877 9999999999987643332111 1 1233333
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
..++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..||++
T Consensus 65 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 65 ---NSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred ---cCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 337899999999999999999999999999998899999999999975
No 29
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.48 E-value=6.6e-13 Score=107.16 Aligned_cols=105 Identities=22% Similarity=0.290 Sum_probs=91.0
Q ss_pred CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE 348 (426)
Q Consensus 269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 348 (426)
++.++.+++++.++++.|.+.+.+.+||+|++| +++|+++..|+..... ..++.+++.
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~-~~~G~v~~~~l~~~~~----------------~~~v~~~~~----- 60 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKN-KVVGIVTSKDVAGKDP----------------DTTIEKVMT----- 60 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCC-eEEEEecHHHHhcccc----------------cccHHHHhc-----
Confidence 478999999999999999999999999999887 9999999999975410 113444443
Q ss_pred CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
.++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus 61 -----~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 61 -----KNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred -----CCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 37889999999999999999999999999998899999999999985
No 30
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.48 E-value=7.3e-13 Score=108.14 Aligned_cols=112 Identities=14% Similarity=0.218 Sum_probs=95.2
Q ss_pred ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353 65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG 144 (426)
Q Consensus 65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g 144 (426)
++.++++++++.+|++.|.+++...+||+|++ ++++|+++..|+.+.+....
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~--------g~~~G~vt~~dl~~~~~~~~-------------------- 53 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH--------GKLAGVLTKTDVVRQMGRCG-------------------- 53 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC--------CCEEEEEehHHHHHHHhhcC--------------------
Confidence 46789999999999999999999999999988 89999999999986543210
Q ss_pred CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353 145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE 224 (426)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~ 224 (426)
......++.++|.. ++.++.+++++.++++.|.+++.+.+||+| ++
T Consensus 54 -----------------------------~~~~~~~v~~~~~~----~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~ 99 (114)
T cd04619 54 -----------------------------GPGCTAPVENVMTR----AVVSCRPGDLLHDVWQVMKQRGLKNIPVVD-EN 99 (114)
T ss_pred -----------------------------CCcccCCHHHHhcC----CCeeECCCCCHHHHHHHHHHcCCCeEEEEC-CC
Confidence 01123467788876 788999999999999999999999999999 47
Q ss_pred CeEEEEEeHHHHHH
Q 014353 225 GTIDNIITQSSVIH 238 (426)
Q Consensus 225 ~~l~Giis~~Dl~~ 238 (426)
++++|+++..|+++
T Consensus 100 ~~~~Gvi~~~dl~~ 113 (114)
T cd04619 100 ARPLGVLNARDALK 113 (114)
T ss_pred CcEEEEEEhHhhcc
Confidence 89999999999864
No 31
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=8.1e-13 Score=110.13 Aligned_cols=120 Identities=21% Similarity=0.331 Sum_probs=92.2
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccH---HHHHHHHHHHhhhcC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITA---KNFLTAVRKYMEEHH 346 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~ 346 (426)
+.++.+++++.++++.|.+.+++.+||+|+++ +++|++|.+|+..++.....+......+. .....++.++
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 76 (128)
T cd04632 3 VITVREDDSVGKAINVLREHGISRLPVVDDNG-KLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDA----- 76 (128)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCCEEEEECCCC-cEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHH-----
Confidence 67889999999999999999999999999887 99999999999876533211100000000 0011223333
Q ss_pred CCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEc--CCCcEEEEEeHHHHHH
Q 014353 347 HEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVD--FNGNLEGVITLRDIIS 400 (426)
Q Consensus 347 ~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd--~~~~liGvIT~~Dll~ 400 (426)
|..++.++.+++++.++++.|.+.+.+.+||++ ++|+++|+||.+||++
T Consensus 77 -----~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 77 -----MSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred -----hcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 444889999999999999999999999999985 4689999999999985
No 32
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=1.3e-12 Score=107.69 Aligned_cols=119 Identities=25% Similarity=0.281 Sum_probs=93.6
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
++++.+++++.++++.|.+.+++++||+|+ | +++|+++.+|+.+.+........-..........++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~-~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 74 (122)
T cd04637 3 VVTVEMDDRLEEVREIFEKHKFHHLLVVED-N-ELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMT------ 74 (122)
T ss_pred ceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-C-eEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhc------
Confidence 788999999999999999999999999997 7 99999999999886542110000000000112334555543
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
.++.++.+++++.++++.|.+++...+||+|++|+++|++|+.|+++
T Consensus 75 ----~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 75 ----RDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred ----CCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 37899999999999999999999999999998899999999999986
No 33
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=9e-13 Score=109.17 Aligned_cols=121 Identities=31% Similarity=0.488 Sum_probs=94.6
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCcccccccccc-HHHHHHHHHHHhhhcCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSIT-AKNFLTAVRKYMEEHHH 347 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~ 347 (426)
+.++.++.++.+++++|.+.++..+||+|++ | +++|+|+..|+..++.....+....... ......++.+++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~-~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 76 (125)
T cd04631 3 VVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTG-KLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIM----- 76 (125)
T ss_pred ceEeCCCCcHHHHHHHHHHcCcccceeEeCCCC-EEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHh-----
Confidence 7888999999999999999999999999987 7 9999999999998765432111100000 000112333333
Q ss_pred CCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 014353 348 EDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR 401 (426)
Q Consensus 348 ~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~ 401 (426)
..++.++++++++.++++.|.+.+.+.++|+|++|+++|+||..||+++
T Consensus 77 -----~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 77 -----TRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA 125 (125)
T ss_pred -----cCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence 3478999999999999999999999999999988999999999999863
No 34
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=6.5e-13 Score=107.93 Aligned_cols=109 Identities=18% Similarity=0.300 Sum_probs=92.6
Q ss_pred ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353 65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG 144 (426)
Q Consensus 65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g 144 (426)
+++++++++++.+|++.|.+++...+||+|++ ++++|+|+..|+.+. ...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~dl~~~-~~~--------------------- 51 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEE--------NKVLGQVTLSDLLEI-GPN--------------------- 51 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC--------CCEEEEEEHHHHHhh-ccc---------------------
Confidence 56889999999999999999999999999987 899999999999752 100
Q ss_pred CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353 145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE 224 (426)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~ 224 (426)
.+...++.++|.. ++.++.+++++.+++..|.+++.+++||+| ++
T Consensus 52 ------------------------------~~~~~~v~~~~~~----~~~~v~~~~~l~~al~~m~~~~~~~lpVvd-~~ 96 (111)
T cd04603 52 ------------------------------DYETLKVCEVYIV----PVPIVYCDSKVTDLLRIFRETEPPVVAVVD-KE 96 (111)
T ss_pred ------------------------------cccccChhheeec----CCcEECCCCcHHHHHHHHHHcCCCeEEEEc-CC
Confidence 0112356777765 778899999999999999999999999999 47
Q ss_pred CeEEEEEeHHHHHH
Q 014353 225 GTIDNIITQSSVIH 238 (426)
Q Consensus 225 ~~l~Giis~~Dl~~ 238 (426)
++++|++|..|+++
T Consensus 97 ~~~~Giit~~di~~ 110 (111)
T cd04603 97 GKLVGTIYERELLR 110 (111)
T ss_pred CeEEEEEEhHHhhc
Confidence 99999999999875
No 35
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=1.8e-12 Score=104.81 Aligned_cols=107 Identities=27% Similarity=0.424 Sum_probs=91.9
Q ss_pred CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE 348 (426)
Q Consensus 269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 348 (426)
++.++.+++++.++++.|.++++..+||+|++| +++|+++.+|+++....+. .++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~-~~~G~v~~~~l~~~~~~~~--------------~~~~~~~------ 61 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDG-RLVGIVTSWDISKAVARDK--------------KSVEDIM------ 61 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECCCC-cEEEEEeHHHHHHHHhhCc--------------cCHHHhc------
Confidence 378899999999999999999999999999887 9999999999987654321 1133333
Q ss_pred CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
..++.++.+++++.++++.|.+++.+.+||++++|+++|+||+.|+++
T Consensus 62 ----~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 62 ----TRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred ----CCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 337889999999999999999999999999998899999999999975
No 36
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=9.2e-13 Score=107.51 Aligned_cols=113 Identities=29% Similarity=0.422 Sum_probs=90.4
Q ss_pred CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHH-HHHHHHHhhhcCC
Q 014353 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNF-LTAVRKYMEEHHH 347 (426)
Q Consensus 269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~ 347 (426)
+++++.+++++.++++.|.+.+++.+||+|+++ +++|+++.+|+.+........ . ...+ ..++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~-~~~Giv~~~dl~~~~~~~~~~-~-----~~~~~~~~v~~~------ 68 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEG-KYVGTISLTDILWKLKGLENL-D-----LERLVDLKVIDV------ 68 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCC-cEEEEEeHHHHHHHhhccCch-h-----HHHHhCCcHHHH------
Confidence 378999999999999999999999999999877 999999999999876432110 0 0000 1233433
Q ss_pred CCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 348 EDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 348 ~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
|.+++.++.+++++.++++.|.+.+ .+||+|++|+++|+||..|+++
T Consensus 69 ----~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 69 ----MNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred ----hcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 3447899999999999999998865 5999998899999999999986
No 37
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=4.9e-13 Score=109.02 Aligned_cols=110 Identities=24% Similarity=0.301 Sum_probs=89.1
Q ss_pred eeEeCCCCcHHHHHHHHHhcC-CCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKK-IGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE 348 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~-~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 348 (426)
+.++.+++++.++++.|.+++ ++.+||+|+++ +++|+++.+|++....... ...++.+++..
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~-~~~G~v~~~dl~~~~~~~~------------~~~~v~~~~~~---- 65 (114)
T cd04801 3 FPTVPAHLTLREFVREYVLGSNQRRFVVVDNEG-RYVGIISLADLRAIPTSQW------------AQTTVIQVMTP---- 65 (114)
T ss_pred cceeCCCCCHHHHHHHHhccCCceeEEEEcCCC-cEEEEEEHHHHHHHHHhhc------------cccchhhhhcc----
Confidence 788999999999999997765 88999999887 9999999999988753210 01123333321
Q ss_pred CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
...+.++.+++++.++++.|.+++.+++||+|++|+++|+||.+||++
T Consensus 66 ----~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 66 ----AAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred ----cccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 013568999999999999999999999999998899999999999875
No 38
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.46 E-value=1.5e-12 Score=104.51 Aligned_cols=103 Identities=20% Similarity=0.292 Sum_probs=88.8
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++.++.++.++++.|.+.+.+.+||+|++| +++|+++..|+.+.... .+.++
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g-~~~Giv~~~dl~~~~~~-----------------~~~~~-------- 56 (106)
T cd04582 3 PITVRPDDPLSDALGLMDDSDLRALTVVDADG-QPLGFVTRREAARASGG-----------------CCGDH-------- 56 (106)
T ss_pred CcEecCCCcHHHHHHHHHhcCCCEEEEECCCC-CEEEEEeHHHHHHhccc-----------------chhhh--------
Confidence 67889999999999999999999999999877 99999999999865210 12222
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
|.+.+.++.+++++.++++.|.+++...+||+|++|+++|+||..|+++
T Consensus 57 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 57 --AEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred --cccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 3336788999999999999999999999999998899999999999975
No 39
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=9.7e-13 Score=106.69 Aligned_cols=110 Identities=31% Similarity=0.494 Sum_probs=91.6
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++.++.++.++++.|.+.+++.+||+|+++ +++|+++.+|+++.+...... . ...++.+++
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~Giv~~~~l~~~~~~~~~~--~-------~~~~~~~~~------- 65 (113)
T cd04623 3 VITVRPDATVAEAAKLMAEKNIGAVVVVDDGG-RLVGIFSERDIVRKVALRGAS--A-------LDTPVSEIM------- 65 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEECCCC-CEEEEEehHHHHHHHhhcCCC--c-------cccCHHHhc-------
Confidence 77889999999999999999999999999877 999999999999876432110 0 011234333
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
..++.++.+++++.++++.|.+.+.+++||+++ |+++|+||..||++
T Consensus 66 ---~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 66 ---TRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred ---CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 337899999999999999999999999999997 99999999999976
No 40
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.45 E-value=1.2e-12 Score=110.55 Aligned_cols=128 Identities=25% Similarity=0.329 Sum_probs=93.5
Q ss_pred CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHH---HHHh--h
Q 014353 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAV---RKYM--E 343 (426)
Q Consensus 269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~--~ 343 (426)
+++++.+++++.++++.|.+.+++.+||+|+++ +++|+++..|+++........ .+....+ .+.... ...+ .
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~-~~~Giv~~~dl~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~ 78 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNG-KPVGVITYRDLAFAEFEDNER-GLPKKSI-KMKRKAGQKRYRYVKE 78 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCC-CEEEEEeHHHHHHHhhccccc-ccchhhh-hhhhhccccccccccc
Confidence 378899999999999999999999999999987 999999999999876432110 0000000 000000 0000 0
Q ss_pred hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
...++.++|..++.++.+++++.++++.|.+++.+++||+++ |+++|+||++|+++
T Consensus 79 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 001233445558899999999999999999999999999996 99999999999986
No 41
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.45 E-value=1.4e-12 Score=107.20 Aligned_cols=112 Identities=23% Similarity=0.342 Sum_probs=94.0
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCccc-CCe
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA-NHI 270 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~-~~~ 270 (426)
++.++.+++++.+++..|.+++..++||+| ++++++|+++..|+.+....... ....++.+ +|.. .++
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d-~~~~~~Givt~~dl~~~~~~~~~------~~~~~~~~----~~~~~~~~ 70 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVD-EDGDLVGVVSRKDLLKASIGGAD------LQKVPVGV----IMTRMPNI 70 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCCEEEEEEHHHHHHHHHcCCC------ccCCCHHH----HhCCCCCc
Confidence 678899999999999999989999999999 47899999999999887653211 11344555 6653 348
Q ss_pred eEeCCCCcHHHHHHHHHhcCCCeeEEEeCC---CCeEEEEEeHHHHHH
Q 014353 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKG---GNKAVGNISLRDIQF 315 (426)
Q Consensus 271 ~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~---~~~lvGiIs~~Dl~~ 315 (426)
.++.+++++.+++++|.+++++.+||+|++ + +++|+||.+|+++
T Consensus 71 ~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~-~l~Gvit~~~l~~ 117 (118)
T cd04617 71 TTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGL-EVIGRITKTNITK 117 (118)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccc-eEEEEEEhhheec
Confidence 899999999999999999999999999987 5 9999999999864
No 42
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.45 E-value=5.6e-13 Score=129.64 Aligned_cols=116 Identities=19% Similarity=0.310 Sum_probs=96.2
Q ss_pred Cccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHh
Q 014353 264 IMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYM 342 (426)
Q Consensus 264 im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 342 (426)
+|.+ .+++++.+++++.++++.|.+++.+.+||+|++| +++|+||.+|+.+....+.. +. ..++.++
T Consensus 207 im~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g-~lvGivt~~Dl~~~~~~~~~---~~-------~~~v~~i- 274 (326)
T PRK10892 207 IMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNM-KIEGIFTDGDLRRVFDMGID---LR-------QASIADV- 274 (326)
T ss_pred HhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCC-cEEEEEecHHHHHHHhcCCC---cc-------cCCHHHh-
Confidence 7875 2499999999999999999999988888899888 99999999999876543210 00 1124444
Q ss_pred hhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 014353 343 EEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR 401 (426)
Q Consensus 343 ~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~ 401 (426)
|.+++.++.+++++.++++.|.+++++++||+| +|+++|+||.+||+++
T Consensus 275 ---------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 275 ---------MTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred ---------cCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 445899999999999999999999999999998 5899999999999975
No 43
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=9.2e-13 Score=106.69 Aligned_cols=108 Identities=22% Similarity=0.276 Sum_probs=91.7
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++.+++++.++++.|.+.++..+||+|+++ +++|+++..|+.+.+..... ..++.+++.
T Consensus 3 ~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~-~~~G~v~~~~l~~~~~~~~~------------~~~v~~~~~------ 63 (111)
T cd04639 3 FETLSPADTLDDAADALLATTQHEFPVVDGDG-HLVGLLTRDDLIRALAEGGP------------DAPVRGVMR------ 63 (111)
T ss_pred ceEcCCCCcHHHHHHHHHHcCCCcceEECCCC-cEEEEeeHHHHHHHHHhcCC------------CCcHHHHhc------
Confidence 67889999999999999988999999999877 99999999999887543210 012444443
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
.++.++.+++++.++++.|.+++..++||+|++|+++|+||..|+.+
T Consensus 64 ----~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 64 ----RDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred ----CCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 37889999999999999999999999999998899999999999975
No 44
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.45 E-value=6.1e-13 Score=129.11 Aligned_cols=122 Identities=25% Similarity=0.302 Sum_probs=101.5
Q ss_pred cccccccccCCcccC-CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHH
Q 014353 254 KKKLSEIGLPIMSAN-HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAK 332 (426)
Q Consensus 254 ~~~v~~~~~~im~~~-~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~ 332 (426)
..++++ +|.++ +++++++++++.++.+.|...+...+||+|++| +++|+|+..|+.+.+..+..
T Consensus 196 ~~~V~~----im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g-~~iG~vt~~dl~~~~~~~~~---------- 260 (321)
T PRK11543 196 LNKVHH----LMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQ-QVQGVFTDGDLRRWLVGGGA---------- 260 (321)
T ss_pred HhHHHH----HhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCC-cEEEEecHHHHHHHHhCCCC----------
Confidence 345666 78763 389999999999999999999999999999988 99999999999886543211
Q ss_pred HHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 014353 333 NFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR 401 (426)
Q Consensus 333 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~ 401 (426)
...++.+++ .+++.++.+++++.++++.|.++++.++||+|++|+++|+||.+|++++
T Consensus 261 -~~~~v~~im----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 261 -LTTPVNEAM----------TRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred -cCCcHHHhc----------CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 112244444 4488999999999999999999999999999988999999999999974
No 45
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.45 E-value=1.5e-12 Score=104.85 Aligned_cols=105 Identities=27% Similarity=0.442 Sum_probs=90.4
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++.++.++.++++.|.+.++.++||+|+++ +++|+++..|+....... .++.+++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~G~v~~~dl~~~~~~~---------------~~v~~~~------- 60 (109)
T cd04583 4 PVTITPDRTLAEAIKLMRDKKVDSLLVVDKDN-KLLGIVSLESLEQAYKEA---------------KSLEDIM------- 60 (109)
T ss_pred CEEECCCCCHHHHHHHHHHCCCceEEEEcCCC-cEEEEEEHHHHHHHhhcC---------------CcHhHhh-------
Confidence 77889999999999999999999999999877 999999999998764211 1233333
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
...+.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++
T Consensus 61 ---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 61 ---LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred ---cCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 337889999999999999999999999999998899999999999975
No 46
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.4e-12 Score=105.74 Aligned_cols=109 Identities=30% Similarity=0.458 Sum_probs=92.2
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++..++++.++++.|.+.+++++||+|+++ +++|+++..|+++.+..+.. ...++.+++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~G~v~~~~l~~~~~~~~~-----------~~~~v~~~~------- 63 (112)
T cd04624 3 VVTVDPDTSIREAAKLMAEENVGSVVVVDPDE-RPIGIVTERDIVRAVAAGID-----------LDTPVSEIM------- 63 (112)
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEECCCC-CEEEEeeHHHHHHHHhccCC-----------CccCHHHhc-------
Confidence 67889999999999999999999999999887 99999999999887644311 011233333
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
..++.++.+++++.++++.|.+++...+||+|++|+++|+||..|+++
T Consensus 64 ---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 64 ---TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred ---cCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 347889999999999999999999999999998899999999999975
No 47
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.45 E-value=2.6e-12 Score=103.99 Aligned_cols=107 Identities=21% Similarity=0.368 Sum_probs=90.8
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE 348 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 348 (426)
+.++.+++++.++.+.|.+.+++.+||+|++ + +++|+++..|+.+...... . . .++..++
T Consensus 3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~-~~~G~v~~~~l~~~~~~~~-~----~-------~~~~~~~------ 63 (111)
T cd04590 3 IVALDADDTLEEILELIAESGHSRFPVYDGDLD-NIIGVVHVKDLLRALAEGE-E----D-------LDLRDLL------ 63 (111)
T ss_pred eEEEcCCCCHHHHHHHHhhCCCceEEEECCCCc-eEEEEEEHHHHHHHHHcCC-C----c-------CCHHHHh------
Confidence 7889999999999999999999999999987 7 9999999999998864321 0 0 1122222
Q ss_pred CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
.++.++.+++++.++++.|.+++.+++||+|++|+++|+||++|+++
T Consensus 64 -----~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 64 -----RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred -----cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 26789999999999999999999999999998899999999999975
No 48
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.45 E-value=1.2e-12 Score=128.74 Aligned_cols=118 Identities=18% Similarity=0.316 Sum_probs=102.1
Q ss_pred CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME 343 (426)
Q Consensus 264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 343 (426)
++.. ++++|++.+++.+|.+.|.++|++++.++++++ ...||||++|+...+...+. +...+++
T Consensus 154 ~~~~-~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~-~~~GIvT~~dl~~~v~~~g~----------~~~~~V~---- 217 (610)
T COG2905 154 VKTL-PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSG-PLLGIVTRKDLRSRVIADGR----------SKTQKVS---- 217 (610)
T ss_pred HhcC-CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCC-CccceeehHHHHHHHHhcCC----------Ccccchh----
Confidence 4554 489999999999999999999999999999988 99999999999998765432 2233444
Q ss_pred hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353 344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH 404 (426)
Q Consensus 344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~ 404 (426)
.+|+.+++++..++.+.+|+-+|..++++|+||++ +|+++|+||.+||++.+-.
T Consensus 218 ------evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 218 ------EVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred ------hhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence 45566999999999999999999999999999998 6999999999999998754
No 49
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.4e-12 Score=107.59 Aligned_cols=120 Identities=28% Similarity=0.383 Sum_probs=93.5
Q ss_pred CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE 348 (426)
Q Consensus 269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 348 (426)
++.++.+++++.++++.|.+.+++.+||+|++| +++|+++.+|+.+....... .......-.....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~v~~~~l~~~~~~~~~-~~~~~~~~~~~~~~v~~~~------ 73 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDG-KLVGLLTQRDLLRAALSSLS-DNGEESLTKERDVPVAEVM------ 73 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCC-CEEEEEEHHHHHHHhccccc-cccccccccccCcCHHHhh------
Confidence 378899999999999999999999999999887 99999999999987543211 0000000000011233333
Q ss_pred CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
..++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 74 ----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 74 ----KTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred ----CCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 347899999999999999999999999999998899999999999985
No 50
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.5e-12 Score=105.51 Aligned_cols=108 Identities=24% Similarity=0.305 Sum_probs=90.7
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++.+++++.++++.|.+.+++++||+|++| +++|+++.+|+..+...... ...++.+++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~G~v~~~dl~~~~~~~~~-----------~~~~v~~~~------- 63 (111)
T cd04626 3 FPTIDEDASIREALHEMLKYNTNEIIVKDNEE-KLKGVVTFTDILDLDLFESF-----------LEKKVFNIV------- 63 (111)
T ss_pred ceEECCCccHHHHHHHHHHhCCCeEEEEcCCC-CEEEEEehHHhHHHHhhccc-----------ccCcHHHHh-------
Confidence 78899999999999999999999999999887 99999999999876432100 012244443
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
..++.++.+++++.++++.|.+++.+++||+|+ |+++|+||..|++.
T Consensus 64 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 64 ---SQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred ---cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 337889999999999999999999999999997 99999999999974
No 51
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.44 E-value=1.2e-12 Score=131.71 Aligned_cols=114 Identities=25% Similarity=0.371 Sum_probs=98.6
Q ss_pred CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME 343 (426)
Q Consensus 264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 343 (426)
+|..+ ++++.+++++.++++.|.+++++.+||+|+++ +++|+|+.+|+...- . ..++.++|
T Consensus 94 iMi~~-pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~g-klvGIVT~rDL~~~~--~--------------~~~V~diM- 154 (479)
T PRK07807 94 LVFDT-PVTLSPDDTVGDALALLPKRAHGAVVVVDEEG-RPVGVVTEADCAGVD--R--------------FTQVRDVM- 154 (479)
T ss_pred ccccC-CeEECCCCCHHHHHHHHHhcCCceEEEECCCC-eEEEEEeHHHHhcCc--c--------------CCCHHHhc-
Confidence 67664 99999999999999999999999999999887 999999999995330 0 01344444
Q ss_pred hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
..++.++++++++.++++.|.+++++++||+|++|+++|+||.+||++.....
T Consensus 155 ---------t~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 155 ---------STDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred ---------cCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence 44899999999999999999999999999999889999999999999987654
No 52
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.44 E-value=2.5e-12 Score=103.96 Aligned_cols=107 Identities=27% Similarity=0.481 Sum_probs=91.2
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++..++++.++++.|.+.+++++||+|+ + +++|+++..|+++....+.. ..++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~-~~~G~v~~~~l~~~~~~~~~------------~~~v~~~~~------ 62 (110)
T cd04588 3 LITLNPNATLREAARLFNTHHIHGAPVVDD-G-KLVGIVTLSDIAHAIARGLE------------LAKVKDVMT------ 62 (110)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCEEEEeeC-C-EEEEEEEHHHHHHHHhcccc------------ccCHHHHhc------
Confidence 788999999999999999999999999998 7 99999999999987543210 022333333
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
.++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 63 ----~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 63 ----KDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred ----CCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 37899999999999999999999999999998899999999999975
No 53
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.44 E-value=1.7e-12 Score=105.49 Aligned_cols=111 Identities=26% Similarity=0.308 Sum_probs=92.8
Q ss_pred CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE 348 (426)
Q Consensus 269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 348 (426)
++.++.+++++.++++.|.+.+.+.+||+|+++ +++|+++..++.+.+.....+. ..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~G~v~~~~i~~~~~~~~~~~----------~~~v~~~~------ 65 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDG-RLVGIFTDGDLRRALEKGLDIL----------TLPVADVM------ 65 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCC-CEEEEechHHHHHHHhccCccc----------cCCHHHhh------
Confidence 477889999999999999988899999999887 9999999999998865332110 01244444
Q ss_pred CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
..++.++.+++++.++++.|..++.+.+||+|++|+++|+||..||++
T Consensus 66 ----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 66 ----TRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred ----ccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 337789999999999999999999999999998899999999999975
No 54
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.43 E-value=1.5e-12 Score=105.67 Aligned_cols=111 Identities=25% Similarity=0.375 Sum_probs=90.7
Q ss_pred CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE 348 (426)
Q Consensus 269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 348 (426)
++.++.+++++.++++.|.+.+.+.+||+|+ + +++|+|+.+|++......+.... ..++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~-~~~G~v~~~dl~~~~~~~~~~~~---------~~~v~~i~------ 64 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-N-KLVGIFTSKDIALRVVAQGLDPE---------STLVERVM------ 64 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-C-EEEEEEEhHHHHHHHHhcCCCcC---------cCCHHHhc------
Confidence 3788999999999999999999999999997 7 99999999999865432221100 01233333
Q ss_pred CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
..++.++.+++++.++++.|.+++.+++||++++|+++|+||..|++.
T Consensus 65 ----~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 65 ----TPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred ----CCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 347889999999999999999999999999998899999999999975
No 55
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.43 E-value=3.1e-12 Score=105.15 Aligned_cols=119 Identities=26% Similarity=0.412 Sum_probs=92.4
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++.+++++.++++.|.+.++..+||+|+ + +++|+++..|+......... . ....+..... ....+.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~-~~~G~i~~~~l~~~~~~~~~--~---~~~~~~~~~~-----~~~~~~ 70 (122)
T cd04585 3 PITVTPDTSLMEALKLMKENSIRRLPVVDR-G-KLVGIVTDRDLKLASPSKAT--T---LDIWELYYLL-----SKIKVS 70 (122)
T ss_pred CEEeCCCCcHHHHHHHHHhCCcceeeEecC-C-eEEEEEeHHHHHHhhhcccc--c---ccchhhhhhh-----cccCHH
Confidence 678999999999999999999999999998 7 99999999999987543210 0 0000000000 001222
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
.+|..++.++.+++++.++++.|.+++.+++||+|++|+++|+||..||++
T Consensus 71 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 71 DIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred HhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 344458899999999999999999999999999998899999999999986
No 56
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=1.2e-12 Score=106.48 Aligned_cols=111 Identities=32% Similarity=0.390 Sum_probs=91.4
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++.+++++.++++.|.+.+++.+||+|+++ +++|+++..|+++.+....... ....++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~v~~~~l~~~~~~~~~~~--------~~~~~v~~~~~------ 67 (114)
T cd04629 3 PVTFTPDMSVTEAVEKLLKSKISGGPVVDDNG-NLVGFLSEQDCLKQLLESSYHC--------DGVATVRDIMT------ 67 (114)
T ss_pred CeEeCCCCCHHHHHHHHHhcCCCCccEECCCC-eEEEEeehHHHHHHhhhhhhcc--------CCCccHHHHhc------
Confidence 67889999999999999999999999999888 9999999999998654321100 00112444443
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
.++.++.+++++.++++.|.+++.+++||+|+ |+++|+||..||++
T Consensus 68 ----~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 68 ----TEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred ----cCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 37889999999999999999999999999997 99999999999986
No 57
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=2.1e-12 Score=108.35 Aligned_cols=126 Identities=25% Similarity=0.415 Sum_probs=94.6
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccc---ccccHHHHHHHHHHHhhhcC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDY---RSITAKNFLTAVRKYMEEHH 346 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~ 346 (426)
+.++.+++++.++++.|.+.+++++||+|+++ +++|+++..|+.+.+......... ......+ ........ ..
T Consensus 3 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~-~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~ 78 (132)
T cd04636 3 VITVKKDDTLRDVVEILLTGKISGVPVVDNEG-RVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLD-ESKIKKLL--GK 78 (132)
T ss_pred CeEeCCCCcHHHHHHHHHHhCCCccceECCCC-CEEEEEeHHHHHHHHhccCCcccccccccccccc-hHHHHHHc--CC
Confidence 78899999999999999999999999999887 999999999999876543211100 0000000 00000000 01
Q ss_pred CCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 347 HEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 347 ~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
++.++|.+++.++.+++++.++++.|.+.+.+++||+|+ |+++|+||+.|+++
T Consensus 79 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 79 KVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred CHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 344455568899999999999999999999999999997 99999999999986
No 58
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.42 E-value=1.1e-12 Score=109.02 Aligned_cols=114 Identities=16% Similarity=0.215 Sum_probs=95.4
Q ss_pred CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhh
Q 014353 64 SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVN 143 (426)
Q Consensus 64 ~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (426)
++++++.+++++.+|++.|.++++..+||+|++ ++++|+++..|++..+....
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~--------~~~~Gii~~~dl~~~~~~~~------------------- 54 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDES--------GKILGMVTLGNLLSSLSSGK------------------- 54 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC--------CCEEEEEEHHHHHHHHHHhc-------------------
Confidence 467899999999999999999999999999998 89999999999987655321
Q ss_pred cCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHh---------hcCC
Q 014353 144 GMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLS---------KYKM 214 (426)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~---------~~~~ 214 (426)
.....++.++|.. ++.++.+++++.++.+++. +.+.
T Consensus 55 -------------------------------~~~~~~v~~im~~----~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 99 (124)
T cd04608 55 -------------------------------VQPSDPVSKALYK----QFKRVNKNDTLGKLSRILETDAFLLVFFEQIS 99 (124)
T ss_pred -------------------------------cCCCCcHHHHhhc----cceecCCCCCHHHHHhhcccCCceEEEecccc
Confidence 0123479999987 8889999999999999653 3367
Q ss_pred cEeEEEeCCCCeEEEEEeHHHHHHHH
Q 014353 215 KSIPVVDLGEGTIDNIITQSSVIHML 240 (426)
Q Consensus 215 ~~ipVvd~~~~~l~Giis~~Dl~~~l 240 (426)
+++||++ ++|+++|+||..|++.++
T Consensus 100 ~~~~v~~-~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 100 SAAIGKE-KQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred ccccccc-cccceEEEEehhHhhhhC
Confidence 7888888 479999999999998763
No 59
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.42 E-value=2e-12 Score=104.95 Aligned_cols=110 Identities=25% Similarity=0.477 Sum_probs=92.4
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
++++.+++++.++++.|.+.+++.+||+|+++ +++|+++.+|+.+......... ..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~G~v~~~~l~~~~~~~~~~~----------~~~v~~~~------- 64 (114)
T cd04613 3 VVTIPEDTPLNELLDVIAHSPENNFPVVDDDG-RLVGIVSLDDIREILFDPSLYD----------LVVASDIM------- 64 (114)
T ss_pred ceeeCCCCcHHHHHHHHHhCCCcceeEECCCC-CEEEEEEHHHHHHHHhcccccc----------cEEHHHhc-------
Confidence 78899999999999999999999999999887 9999999999988754321100 01234443
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcC-CCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDF-NGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~-~~~liGvIT~~Dll~ 400 (426)
..++.++.+++++.++++.|...+.+++||+|. +|+++|+||..|++.
T Consensus 65 ---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 65 ---TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred ---cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 347899999999999999999999999999997 799999999999975
No 60
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=4.6e-12 Score=103.28 Aligned_cols=112 Identities=19% Similarity=0.303 Sum_probs=94.5
Q ss_pred ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353 65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG 144 (426)
Q Consensus 65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g 144 (426)
++.++.+++++.+|++.|.++++..+||+|++. ++++|+++..|+++++.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-------~~~~G~v~~~dl~~~~~~~~~------------------- 55 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRE-------SDAYGIVTMRDILKKVVAEGR------------------- 55 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCC-------CcEEEEEehHHHHHHHHhCCC-------------------
Confidence 578999999999999999999999999999742 699999999999876553210
Q ss_pred CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353 145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE 224 (426)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~ 224 (426)
.....++.++|.. ++.++.+++++.+++..|.+++.+.+||+| +
T Consensus 56 ------------------------------~~~~~~v~~~~~~----~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~- 99 (114)
T cd04630 56 ------------------------------DPDRVNVYEIMTK----PLISVSPDMDIKYCARLMERTNIRRAPVVE-N- 99 (114)
T ss_pred ------------------------------CCCccCHHHHhcC----CCeeECCCCCHHHHHHHHHHcCCCEeeEee-C-
Confidence 0112457788865 788999999999999999999999999999 3
Q ss_pred CeEEEEEeHHHHHH
Q 014353 225 GTIDNIITQSSVIH 238 (426)
Q Consensus 225 ~~l~Giis~~Dl~~ 238 (426)
++++|+++..|+++
T Consensus 100 ~~~~Gvi~~~dl~~ 113 (114)
T cd04630 100 NELIGIISLTDIFL 113 (114)
T ss_pred CEEEEEEEHHHhhc
Confidence 89999999999875
No 61
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=1.8e-12 Score=104.80 Aligned_cols=103 Identities=33% Similarity=0.489 Sum_probs=86.1
Q ss_pred eCCCCcHHHHHHHHHhcC-----CCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCC
Q 014353 273 VYEDEPVLQAFKLMRRKK-----IGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHH 347 (426)
Q Consensus 273 v~~~~~v~~a~~~m~~~~-----~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 347 (426)
+.+++++.++++.|.+++ +..+||+|+++ +++|+++.+|+++.- . ..++.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~-~~~G~v~~~~l~~~~--~--------------~~~v~~~~~---- 60 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEG-RLLGVVSLRDLLLAD--P--------------DTPVSDIMD---- 60 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCC-CEEEEEEHHHHhcCC--C--------------cchHHHHhC----
Confidence 568899999999998877 47899999877 999999999997531 0 123444443
Q ss_pred CCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 014353 348 EDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRL 402 (426)
Q Consensus 348 ~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l 402 (426)
.++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+
T Consensus 61 ------~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~~ 109 (109)
T cd04606 61 ------TDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDVI 109 (109)
T ss_pred ------CCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhhC
Confidence 3789999999999999999999999999999889999999999999763
No 62
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=2e-12 Score=107.60 Aligned_cols=111 Identities=18% Similarity=0.196 Sum_probs=86.7
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh-----hCCccccccccccHHHHHHHHHHHhhh
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLL-----TAPEIYHDYRSITAKNFLTAVRKYMEE 344 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~ 344 (426)
+.++..++++.++++.|.+.+++.+||+|++| +++|+++..|+.+.. ..+. .. ....++.++|..
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~-~~~Giv~~~dl~~~~~~~~~~~~~--~~-------~~~~~v~~im~~ 72 (126)
T cd04640 3 PIVIPADTSIDEALELMIKHGVRLLLVVDSDD-NFIGVITAVDLLGEEPIKRIQEGG--IS-------RSELTVADVMTP 72 (126)
T ss_pred CeEECCCCcHHHHHHHHHHcCCcEEEEEcCCC-cEEEEEEHHHHhhChhhHHHHHcC--CC-------chheEHHHhcCc
Confidence 68899999999999999999999999999887 999999999998632 1110 00 011224444432
Q ss_pred cCCCCCCCcCCcee--e----cCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHH
Q 014353 345 HHHEDSPLLSGMVT--C----SRNHTIKELIHLLDSKKIHRIYVVDFN-GNLEGVITLRDIIS 400 (426)
Q Consensus 345 ~~~~~~~~~~~~~~--v----~~~~tl~~~~~~m~~~~~~~l~Vvd~~-~~liGvIT~~Dll~ 400 (426)
++.. + .+++++.++++.|.+++.+++||+|++ |+++|+||++||++
T Consensus 73 ----------~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 73 ----------KEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred ----------hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 3322 2 368999999999999999999999986 79999999999986
No 63
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.41 E-value=3.7e-12 Score=103.14 Aligned_cols=108 Identities=29% Similarity=0.400 Sum_probs=90.2
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++..+.++.++.+.|.+.+++.+||+|+ + +++|+++..|+.+.+...+... ..++.+++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~-~~~G~v~~~~l~~~~~~~~~~~----------~~~i~~~~------- 63 (111)
T cd04800 3 PVTCSPDTTIREAARLMTEHRVSSLLVVDD-G-RLVGIVTDRDLRNRVVAEGLDP----------DTPVSEVM------- 63 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEEEC-C-EEEEEEEhHHHHHHHhccCCCc----------cCCHHHHh-------
Confidence 788999999999999999999999999998 6 9999999999987644322110 11233443
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
..++.++.+++++.++++.|.+++.+++||+++ |+++|+||..|+++
T Consensus 64 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 64 ---TAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred ---CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 337889999999999999999999999999997 99999999999985
No 64
>PRK11573 hypothetical protein; Provisional
Probab=99.41 E-value=3.6e-12 Score=126.93 Aligned_cols=135 Identities=17% Similarity=0.246 Sum_probs=112.8
Q ss_pred hccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccccc
Q 014353 252 WGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT 330 (426)
Q Consensus 252 ~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~ 330 (426)
+.+.++++ +|.| .++++++.++++.++++.+.+++++++||.+++-++++|++..+|++.....+.. .+
T Consensus 184 l~~~~v~e----iMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~------~~ 253 (413)
T PRK11573 184 LEKVTVDD----IMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE------FT 253 (413)
T ss_pred cCCCChhh----cCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCc------CC
Confidence 55677888 8987 5699999999999999999999999999998765699999999999976432211 01
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCcc
Q 014353 331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYF 410 (426)
Q Consensus 331 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~~ 410 (426)
. ..+.++ .+++.+++++.++.++++.|.+++.|-+.|+|+.|...|+||+.||+..+++++...+
T Consensus 254 ~----~~l~~~-----------~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~ 318 (413)
T PRK11573 254 K----ENMLRA-----------ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSM 318 (413)
T ss_pred H----HHHHhh-----------ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCccc
Confidence 1 112222 2378999999999999999999999999999999999999999999999999988765
Q ss_pred c
Q 014353 411 G 411 (426)
Q Consensus 411 ~ 411 (426)
+
T Consensus 319 d 319 (413)
T PRK11573 319 S 319 (413)
T ss_pred C
Confidence 4
No 65
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.41 E-value=4.1e-12 Score=102.71 Aligned_cols=108 Identities=28% Similarity=0.436 Sum_probs=90.9
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++.+++++.++++.|.+.+++.+||+|+ + +++|+++.+|+.+....... ...++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~-~~~G~v~~~~l~~~~~~~~~-----------~~~~v~~~~------- 62 (111)
T cd04611 3 ILTCPPDTSLAEAASRMRERRISSIVVVDD-G-RPLGIVTERDILRLLASGPD-----------LQTPVGEVM------- 62 (111)
T ss_pred ceEECCCCcHHHHHHHHHHcCCCEEEEeeC-C-EEEEEEeHHHHHHHHhcCCC-----------CCcCHHHhc-------
Confidence 678999999999999999999999999987 6 99999999999987643210 011233333
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
..++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||.+|+++
T Consensus 63 ---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 63 ---SSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred ---CCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 347899999999999999999999999999998899999999999975
No 66
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=4.3e-12 Score=102.63 Aligned_cols=107 Identities=30% Similarity=0.445 Sum_probs=90.3
Q ss_pred CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE 348 (426)
Q Consensus 269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 348 (426)
++.++..+.++.++.+.|.+.++.++||+|+ + +++|+++..|+.+...... ...++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~-~~~G~v~~~dl~~~~~~~~------------~~~~~~~~~------ 62 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-G-RVVGIISRRDVEKALRHGL------------GHAPVKDYM------ 62 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-C-EEEEEEEHHHHHHHHhccc------------ccCcHHHHh------
Confidence 3788999999999999999999999999998 7 9999999999987653210 011234443
Q ss_pred CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
..++.++.+++++.+++++|.+++.+++||+| +|+++|+||+.|+++
T Consensus 63 ----~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 63 ----STDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ----cCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 33789999999999999999999999999999 799999999999975
No 67
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.41 E-value=2.9e-12 Score=104.54 Aligned_cols=109 Identities=28% Similarity=0.345 Sum_probs=86.9
Q ss_pred eeEeCCCCcHHHHHHHHHhcC-CCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKK-IGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE 348 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~-~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 348 (426)
+.++.++.++.++++.|.+.+ ...++|+|+ + +++|+++..|++++....... . ..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~-~~~G~v~~~dl~~~~~~~~~~---~-------~~~i~~~~------ 64 (115)
T cd04620 3 PLTVTPDTPVADAIALMSQQGDSSCVLVVEK-G-RLLGIFTERDIVRLTAIGKDL---S-------DLPIGEVM------ 64 (115)
T ss_pred CeEeCCCCcHHHHHHHHHhcCCCceEEEcCC-C-cEEEEEeHHHHHHHHhcCCCc---c-------ccCHHHhc------
Confidence 678899999999999998888 667777774 6 999999999999865422100 0 01233333
Q ss_pred CCCCcCCceeecCC--CCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 349 DSPLLSGMVTCSRN--HTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 349 ~~~~~~~~~~v~~~--~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
..++.++.++ +++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 65 ----~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 65 ----TQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ----CCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 3367888877 78999999999999999999998899999999999986
No 68
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=4.8e-12 Score=102.92 Aligned_cols=110 Identities=18% Similarity=0.308 Sum_probs=93.7
Q ss_pred ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353 65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG 144 (426)
Q Consensus 65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g 144 (426)
+.+++++++++.+|++.|.+++++.+||+|++ ++++|+++..|+...+....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~--------~~~~G~v~~~dl~~~~~~~~-------------------- 54 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDEN--------GRLLGTVTDGDIRRALLKGL-------------------- 54 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCC--------CCEEEEEEcHHHHHHHhcCC--------------------
Confidence 45789999999999999999999999999988 89999999999986544221
Q ss_pred CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353 145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE 224 (426)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~ 224 (426)
....++.++|.. ++.++.+++++.+++..|.+++.+.+||++ ++
T Consensus 55 -------------------------------~~~~~v~~~~~~----~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~ 98 (113)
T cd04607 55 -------------------------------SLDDPVSEVMNR----NPITAKVGSSREEILALMRERSIRHLPILD-EE 98 (113)
T ss_pred -------------------------------CcCCCHHHhhcC----CCEEEcCCCCHHHHHHHHHHCCCCEEEEEC-CC
Confidence 012356777775 788899999999999999999999999999 47
Q ss_pred CeEEEEEeHHHHHH
Q 014353 225 GTIDNIITQSSVIH 238 (426)
Q Consensus 225 ~~l~Giis~~Dl~~ 238 (426)
++++|++|..|++.
T Consensus 99 ~~~~Gvit~~di~~ 112 (113)
T cd04607 99 GRVVGLATLDDLLS 112 (113)
T ss_pred CCEEEEEEhHHhcc
Confidence 89999999999863
No 69
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=2.1e-12 Score=108.73 Aligned_cols=128 Identities=23% Similarity=0.384 Sum_probs=94.2
Q ss_pred CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccc--cccccc--cHHHHHHHHHHHhhh
Q 014353 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY--HDYRSI--TAKNFLTAVRKYMEE 344 (426)
Q Consensus 269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~--~~~~~~--~~~~~~~~v~~~~~~ 344 (426)
++.++.+++++.++++.|.+.+++++||+|+++ +++|+|+.+|+......+... ..+... ....+..... ...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~-~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 79 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDG-RLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFV--RSH 79 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCC-CEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHH--Hhc
Confidence 378899999999999999999999999999877 999999999998765332100 000000 0000000000 001
Q ss_pred cCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 345 HHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 345 ~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
...+.++|..++.++.+++++.++++.|.+++.+++||+| +|+++|+||+.|+++
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 80 GRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred CCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 1133445556889999999999999999999999999999 899999999999986
No 70
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.40 E-value=7.7e-13 Score=133.65 Aligned_cols=175 Identities=15% Similarity=0.253 Sum_probs=140.6
Q ss_pred cccccchhhhccccccCCcEEecCCCCHHHHHHHHhh-----cCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchh
Q 014353 175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSK-----YKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWF 249 (426)
Q Consensus 175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~-----~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~ 249 (426)
.++..+++++|.+ .+.++.++.++.++++.|.+ ++...++|+| ++++++|+++.+|++..-
T Consensus 127 ~~~e~tvg~iMt~----~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd-~~~~l~GvV~l~dLl~a~--------- 192 (449)
T TIGR00400 127 SYSDDSAGRIMTI----EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTN-ESKHLKGVLSIRDLILAK--------- 192 (449)
T ss_pred CCCcchHHHhCcC----ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEEC-CCCeEEEEEEHHHHhcCC---------
Confidence 4677899999987 88999999999999999975 4567789888 479999999999986421
Q ss_pred hhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccc
Q 014353 250 ESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSI 329 (426)
Q Consensus 250 ~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~ 329 (426)
...++++ +|+++ ++++.+++++.++++.|.++++..+||+|++| +++|+||.+|++..+....
T Consensus 193 ---~~~~v~~----im~~~-~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g-~lvGiIt~~Dil~~l~~~~-------- 255 (449)
T TIGR00400 193 ---PEEILSS----IMRSS-VFSIVGVNDQEEVARLIQKYDFLAVPVVDNEG-RLVGIVTVDDIIDVIQSEA-------- 255 (449)
T ss_pred ---CCCcHHH----HhCCC-CeeECCCCCHHHHHHHHHHcCCCEEeEEcCCC-eEEEEEEHHHHHHHHHhhh--------
Confidence 1245777 78775 88999999999999999999999999999988 9999999999999875321
Q ss_pred cHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353 330 TAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV 403 (426)
Q Consensus 330 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~ 403 (426)
.++++.. ...+..+++++..++..|.++++..++|. .+.|++| ..++..+.
T Consensus 256 --------~ed~~~~----------~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~~f~ 306 (449)
T TIGR00400 256 --------TEDFYMI----------AAVKPLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIISNYE 306 (449)
T ss_pred --------HHHHHHh----------cCCCCCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHHHHH
Confidence 2334333 33445567889999999999999888775 5777777 66766654
No 71
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=6.6e-12 Score=101.77 Aligned_cols=112 Identities=24% Similarity=0.418 Sum_probs=94.4
Q ss_pred CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhh
Q 014353 64 SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVN 143 (426)
Q Consensus 64 ~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (426)
++++++++++++.+|++.|.++++..+||+|++ ++++|+++..|++.++.....
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~--------~~~~Giv~~~~l~~~~~~~~~------------------ 54 (113)
T cd04623 1 RDVITVRPDATVAEAAKLMAEKNIGAVVVVDDG--------GRLVGIFSERDIVRKVALRGA------------------ 54 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEECCC--------CCEEEEEehHHHHHHHhhcCC------------------
Confidence 367889999999999999999999999999987 899999999999876432110
Q ss_pred cCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCC
Q 014353 144 GMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLG 223 (426)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~ 223 (426)
.....++.++|.. ++.++.++.++.++++.|.+.+.+.+||++ +
T Consensus 55 -------------------------------~~~~~~~~~~~~~----~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~-~ 98 (113)
T cd04623 55 -------------------------------SALDTPVSEIMTR----NVITVTPDDTVDEAMALMTERRFRHLPVVD-G 98 (113)
T ss_pred -------------------------------CccccCHHHhcCC----CcEEECCCCcHHHHHHHHHHcCCCEeEEEe-C
Confidence 0112357777765 788999999999999999999999999999 3
Q ss_pred CCeEEEEEeHHHHHH
Q 014353 224 EGTIDNIITQSSVIH 238 (426)
Q Consensus 224 ~~~l~Giis~~Dl~~ 238 (426)
++++|+++..|+++
T Consensus 99 -~~~~Gvit~~di~~ 112 (113)
T cd04623 99 -GKLVGIVSIGDVVK 112 (113)
T ss_pred -CEEEEEEEHHHhhc
Confidence 89999999999875
No 72
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=4.1e-12 Score=105.62 Aligned_cols=124 Identities=24% Similarity=0.364 Sum_probs=91.5
Q ss_pred ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353 65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG 144 (426)
Q Consensus 65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g 144 (426)
+++++++++++.+|++.|.++++..+||+|++ ++++|+++..|+............
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~--------~~~~Giv~~~dl~~~~~~~~~~~~---------------- 57 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK--------GKLIGNISASDLKGLLLSPDDLLL---------------- 57 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC--------CcEEEEEEHHHhhhhhcCcchhhc----------------
Confidence 57899999999999999999999999999988 899999999999876432110000
Q ss_pred CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353 145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE 224 (426)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~ 224 (426)
.. .. .+.. +. ..-....+.+.. ++..+.+++++.+++..|.+++.+++||+| ++
T Consensus 58 ---------~~--~~-----~~~~-~~----~~~~~~~~~~~~----~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~ 111 (126)
T cd04642 58 ---------YR--TI-----TFKE-LS----EKFTDSDGVKSR----PLITCTPSSTLKEVITKLVANKVHRVWVVD-EE 111 (126)
T ss_pred ---------cc--ch-----hhhh-hh----hhcccccccccC----CCeEECCCCcHHHHHHHHHHhCCcEEEEEC-CC
Confidence 00 00 0000 00 000011123333 788999999999999999999999999999 46
Q ss_pred CeEEEEEeHHHHHH
Q 014353 225 GTIDNIITQSSVIH 238 (426)
Q Consensus 225 ~~l~Giis~~Dl~~ 238 (426)
++++|++|..|+++
T Consensus 112 ~~~~Giit~~dil~ 125 (126)
T cd04642 112 GKPIGVITLTDIIS 125 (126)
T ss_pred CCEEEEEEHHHHhc
Confidence 89999999999875
No 73
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=4.7e-12 Score=102.96 Aligned_cols=113 Identities=28% Similarity=0.384 Sum_probs=94.9
Q ss_pred CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhh
Q 014353 64 SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVN 143 (426)
Q Consensus 64 ~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (426)
++++++++++++.+|++.|.++++..+||+|++ ++++|+++..|+++.+......
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--------~~~~G~v~~~~l~~~~~~~~~~----------------- 55 (114)
T cd04629 1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN--------GNLVGFLSEQDCLKQLLESSYH----------------- 55 (114)
T ss_pred CCCeEeCCCCCHHHHHHHHHhcCCCCccEECCC--------CeEEEEeehHHHHHHhhhhhhc-----------------
Confidence 367889999999999999999999999999988 8999999999998765432100
Q ss_pred cCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCC
Q 014353 144 GMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLG 223 (426)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~ 223 (426)
.....++.++|.. ++..+.+++++.+++..|.+++.+++||++ +
T Consensus 56 -------------------------------~~~~~~v~~~~~~----~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~ 99 (114)
T cd04629 56 -------------------------------CDGVATVRDIMTT----EVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-D 99 (114)
T ss_pred -------------------------------cCCCccHHHHhcc----CceEECCCCcHHHHHHHHHHhCCCccCEEE-C
Confidence 0112357777765 778899999999999999999999999999 3
Q ss_pred CCeEEEEEeHHHHHH
Q 014353 224 EGTIDNIITQSSVIH 238 (426)
Q Consensus 224 ~~~l~Giis~~Dl~~ 238 (426)
++++|++|..|+++
T Consensus 100 -~~~~Gvit~~di~~ 113 (114)
T cd04629 100 -GKLVGQISRRDVLR 113 (114)
T ss_pred -CEEEEEEEHHHHhc
Confidence 89999999999875
No 74
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=6.7e-12 Score=103.82 Aligned_cols=118 Identities=25% Similarity=0.465 Sum_probs=90.7
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC-CeEEEEEeHHHHHHHHHhccCcch-hhhhccccccccccCCcccCC
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE-GTIDNIITQSSVIHMLAECAGLEW-FESWGKKKLSEIGLPIMSANH 269 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~-~~l~Giis~~Dl~~~l~~~~~~~~-~~~~~~~~v~~~~~~im~~~~ 269 (426)
++.++.+++++.+++..|.+++++++||+|. + ++++|+++..|+++++..+..... ........+.. ..+|.. +
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~ 77 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE-ESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRD--LTIGTS-D 77 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeC-CCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhh--cccCcC-C
Confidence 6678899999999999999889999999994 5 899999999999987643211000 00000001110 014554 4
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHH
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQ 314 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~ 314 (426)
+.++.+++++.++++.|.+++.+.+||+|+++ +++|+||.+|+.
T Consensus 78 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~vGiit~~di~ 121 (123)
T cd04627 78 VISINGDQPLIDALHLMHNEGISSVAVVDNQG-NLIGNISVTDVR 121 (123)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCceEEEECCCC-cEEEEEeHHHhh
Confidence 89999999999999999999999999999887 999999999985
No 75
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=4.3e-12 Score=104.92 Aligned_cols=123 Identities=30% Similarity=0.435 Sum_probs=97.7
Q ss_pred CCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhh
Q 014353 63 PSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAV 142 (426)
Q Consensus 63 ~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~ 142 (426)
+++++++++++++.+|.+.|.++++..+||+|++ |+++|+|+..|++.++.......
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~--------~~~~Giv~~~~l~~~~~~~~~~~--------------- 57 (124)
T cd04600 1 SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD--------RRLVGIVTQRDLLRHARPDGRRP--------------- 57 (124)
T ss_pred CCCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC--------CCEEEEEEHHHHHhhhcccccch---------------
Confidence 3678999999999999999999999999999987 89999999999986543211000
Q ss_pred hcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeC
Q 014353 143 NGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDL 222 (426)
Q Consensus 143 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~ 222 (426)
+...+. ......++.++|.. .+.++.+++++.+++..|.+++.+.+||+|
T Consensus 58 -----------------------~~~~~~--~~~~~~~i~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~- 107 (124)
T cd04600 58 -----------------------LRGRLR--GRDKPETVGDIMSP----PVVTVRPDTPIAELVPLLADGGHHHVPVVD- 107 (124)
T ss_pred -----------------------hhhhhh--cccccccHHHhccC----CCeeeCCCCcHHHHHHHHHhcCCCceeEEc-
Confidence 000000 01223467788876 788999999999999999999999999999
Q ss_pred CCCeEEEEEeHHHHHH
Q 014353 223 GEGTIDNIITQSSVIH 238 (426)
Q Consensus 223 ~~~~l~Giis~~Dl~~ 238 (426)
++|+++|+++..|+++
T Consensus 108 ~~g~~~Gvit~~di~~ 123 (124)
T cd04600 108 EDRRLVGIVTQTDLIA 123 (124)
T ss_pred CCCCEEEEEEhHHhhc
Confidence 4799999999999875
No 76
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.39 E-value=2.9e-12 Score=124.60 Aligned_cols=122 Identities=11% Similarity=0.120 Sum_probs=103.0
Q ss_pred ccCCccCCCCCCC--ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCC
Q 014353 52 ESIPVEAFPPPPS--QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSP 129 (426)
Q Consensus 52 ~~~~~~~~~~~~~--~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~ 129 (426)
..++++++ |.+ +++++++++|+.+|++.|.++++..+||+|++ |+++|+||..|+.+.+...
T Consensus 200 ~~~~V~di--m~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~--------g~lvGivt~~Dl~~~~~~~------ 263 (326)
T PRK10892 200 LLLRVSDI--MHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN--------MKIEGIFTDGDLRRVFDMG------ 263 (326)
T ss_pred ccCcHHHH--hCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC--------CcEEEEEecHHHHHHHhcC------
Confidence 45667777 776 89999999999999999999998888888987 8999999999997532210
Q ss_pred CCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHH
Q 014353 130 RSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLL 209 (426)
Q Consensus 130 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l 209 (426)
..+...++.++|.. ++.++.+++++.+++..|
T Consensus 264 --------------------------------------------~~~~~~~v~~im~~----~~~~v~~~~~l~~a~~~m 295 (326)
T PRK10892 264 --------------------------------------------IDLRQASIADVMTP----GGIRVRPGILAVDALNLM 295 (326)
T ss_pred --------------------------------------------CCcccCCHHHhcCC----CCEEECCCCCHHHHHHHH
Confidence 01223468899987 888999999999999999
Q ss_pred hhcCCcEeEEEeCCCCeEEEEEeHHHHHHH
Q 014353 210 SKYKMKSIPVVDLGEGTIDNIITQSSVIHM 239 (426)
Q Consensus 210 ~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~ 239 (426)
.+++++++||++ +++++|+||..|++++
T Consensus 296 ~~~~~~~lpVv~--~~~lvGiit~~dil~~ 323 (326)
T PRK10892 296 QSRHITSVLVAD--GDHLLGVLHMHDLLRA 323 (326)
T ss_pred HHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence 999999999998 5799999999999864
No 77
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=4.5e-12 Score=104.47 Aligned_cols=119 Identities=25% Similarity=0.377 Sum_probs=92.0
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++.+++++.++++.|.+.+++++||+|++| +++|+++..|+++........... .........++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~-~~~G~v~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------- 72 (122)
T cd04635 3 PVTCTPDDPVSKVWDLMLESGFTGLPVVQKAG-ELIGIITRRDIIRAGSVRTSVEDQ-QRTQTKASPTVEKI-------- 72 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcccEECCCC-cEEEEEEcHHHHhhccccccccch-hhhhhhccCcHHHH--------
Confidence 78899999999999999999999999999887 999999999998753111000000 00000011223333
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
|..++.++..++++.++++.|.+++.+.+||+|++|+++|+||+.|+++
T Consensus 73 --~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 73 --MSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred --hcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 3447899999999999999999999999999998899999999999986
No 78
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.39 E-value=9.4e-12 Score=100.58 Aligned_cols=108 Identities=28% Similarity=0.423 Sum_probs=90.8
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++.+++++.++++.|.+.+++.+||+|+ + +++|+++..|+.+....... . . ..+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~-~~~G~v~~~dl~~~~~~~~~-~--------~--~~~~~~-------- 61 (111)
T cd04612 3 VVTVPVDLTVDEVLALMFGERHRGYPVVDD-G-RLVGIVTLADIRRVPAEGRE-A--------T--VLVGDV-------- 61 (111)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcceEeeC-C-eEEEEEEHHHHHHHHhcCcc-c--------c--cCHHHh--------
Confidence 788999999999999999999999999998 7 99999999999886533210 0 0 112232
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
|..++.++.+++++.++++.|.+++.+++||+|++|+++|+||..|+++
T Consensus 62 --~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 62 --MTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred --ccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 3448899999999999999999999999999998899999999999975
No 79
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.39 E-value=5.6e-12 Score=102.12 Aligned_cols=109 Identities=19% Similarity=0.245 Sum_probs=90.0
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+++++++.++.++++.|.+.+...++|+|+ + +++|+++..|+......+... ...++.+++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~-~~~G~v~~~~l~~~~~~~~~~----------~~~~i~~~~------- 63 (111)
T cd04589 3 PLIVDASTSIRDAARLMREHGADALLVRDG-D-PRLGIVTRTDLLDAVLLDGLP----------SSTPVGEIA------- 63 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEecC-C-eEEEEEEHHHHHHHHHcCCCC----------CCCCHHHHh-------
Confidence 678899999999999999999999999998 7 899999999998875432110 011233333
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR 401 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~ 401 (426)
..++..+++++++.++++.|.+++.+.+||+|+ |+++|+||..|++++
T Consensus 64 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~~ 111 (111)
T cd04589 64 ---TFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLSF 111 (111)
T ss_pred ---CCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhcC
Confidence 337889999999999999999999999999985 899999999999863
No 80
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.39 E-value=6.2e-12 Score=102.05 Aligned_cols=110 Identities=31% Similarity=0.497 Sum_probs=89.2
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++.+++++.++++.|.+.+++++||+|+ | +++|+++..|++......+.. +. ..++.+++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~-~~~G~i~~~~l~~~~~~~~~~--~~-------~~~~~~~~------- 64 (113)
T cd04622 3 VVTVSPDDTIREAARLMREHDVGALPVCEN-D-RLVGIVTDRDIVVRAVAEGRD--PD-------TTTVGDVM------- 64 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEeeC-C-EEEEEEEhHHHHHHHhhccCC--cc-------cCCHHHhc-------
Confidence 788999999999999999999999999998 7 999999999997332111100 00 00133333
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
...+.++.+++++.++++.|...+.+++||+|++|+++|+||..|+++
T Consensus 65 ---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 65 ---TRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred ---cCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 347889999999999999999999999999998899999999999975
No 81
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.39 E-value=5.3e-12 Score=102.94 Aligned_cols=105 Identities=28% Similarity=0.419 Sum_probs=86.9
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeC---CCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEK---GGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHH 346 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~---~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 346 (426)
+.++.+++++.++++.|.+.++..+||+|+ ++ +++|+++..|+..... . ..++.+++.
T Consensus 4 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~-~~~G~v~~~dl~~~~~-~--------------~~~v~~~~~--- 64 (114)
T cd04602 4 PSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG-KLLGIVTSRDIDFLTD-S--------------ETPLSEVMT--- 64 (114)
T ss_pred CeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC-EEEEEEEhHHhhhhhc-c--------------CCCHHHhcC---
Confidence 678899999999999999999999999997 66 9999999999875421 1 012344443
Q ss_pred CCCCCCcCCceeecC--CCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 347 HEDSPLLSGMVTCSR--NHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 347 ~~~~~~~~~~~~v~~--~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
..+.++.. ++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 65 -------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 65 -------PREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred -------CCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 25566655 999999999999999999999998899999999999975
No 82
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=5.9e-12 Score=102.69 Aligned_cols=114 Identities=23% Similarity=0.364 Sum_probs=92.3
Q ss_pred ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353 65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG 144 (426)
Q Consensus 65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g 144 (426)
+++++++++++.+|++.|.++++..+||+|++ ++++|+++..|+..++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~Giv~~~dl~~~~~~~~~~------------------ 55 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE--------GKYVGTISLTDILWKLKGLENL------------------ 55 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC--------CcEEEEEeHHHHHHHhhccCch------------------
Confidence 57899999999999999999999999999987 8999999999998765321100
Q ss_pred CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353 145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE 224 (426)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~ 224 (426)
........++.++|.. ++.++.+++++.+++..|.+.+ .+||+| ++
T Consensus 56 ---------------------------~~~~~~~~~v~~~~~~----~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~-~~ 101 (116)
T cd04643 56 ---------------------------DLERLVDLKVIDVMNT----DVPVIIDDADIEEILHLLIDQP--FLPVVD-DD 101 (116)
T ss_pred ---------------------------hHHHHhCCcHHHHhcC----CCceecCCCCHHHHHHHHhcCC--ceeEEe-CC
Confidence 0000123467788876 7888999999999999998754 589999 47
Q ss_pred CeEEEEEeHHHHHH
Q 014353 225 GTIDNIITQSSVIH 238 (426)
Q Consensus 225 ~~l~Giis~~Dl~~ 238 (426)
++++|++|..|+++
T Consensus 102 ~~~~Gvit~~dil~ 115 (116)
T cd04643 102 GIFIGIITRREILK 115 (116)
T ss_pred CeEEEEEEHHHhhc
Confidence 89999999999875
No 83
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=6.5e-12 Score=100.50 Aligned_cols=101 Identities=35% Similarity=0.461 Sum_probs=86.8
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
++++.+++++.++++.|.+.++..+||+|+ + +++|+++.+|+.+.... .++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~-~~~Giv~~~~l~~~~~~----------------~~~~~~~------- 57 (105)
T cd04599 3 PITIDPLDSVGRAARLMEKHRIGGLPVVED-G-KLVGIITSRDVRRAHPN----------------RLVADAM------- 57 (105)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEehHHhhccccc----------------CCHHHHc-------
Confidence 678899999999999999999999999984 6 99999999999874210 1233343
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDII 399 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll 399 (426)
..++.++++++++.++++.|.+++..++||+|+ |+++|+||..|++
T Consensus 58 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 58 ---TREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred ---cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 337899999999999999999999999999997 9999999999997
No 84
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=5.8e-12 Score=103.65 Aligned_cols=117 Identities=26% Similarity=0.353 Sum_probs=90.6
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHH-HHHHHHHhhhcCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNF-LTAVRKYMEEHHHE 348 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~ 348 (426)
++++.+++++.++++.|.+.+++++||+|+ | +++|+++..|+.+.+..... .+........+ ..++.
T Consensus 3 ~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~-~~~G~v~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~--------- 70 (121)
T cd04633 3 VITVSPDDRVSHARRLMLDHDISRLPVIEG-G-KLVGIVTEKDIADALRSFRP-LVRDRHQERRIRNLPVS--------- 70 (121)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeeEEEEC-C-EEEEEEchHHHHHhhhhhhh-cccchhhhhhhhccCHH---------
Confidence 778999999999999999999999999997 7 99999999999887542110 00000000000 01222
Q ss_pred CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
++|..++.++.+++++.++++.|.+.+.+++||+|+ |+++|+||..|+++
T Consensus 71 -~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 71 -DIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred -HHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 334458899999999999999999999999999997 99999999999985
No 85
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1.1e-11 Score=100.51 Aligned_cols=109 Identities=25% Similarity=0.426 Sum_probs=88.1
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
++++.+++++.++++.|.+++.+.++|.++ + +++|+++.+|+.+....... .+ ...++.+++.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~-~~~G~v~~~dl~~~~~~~~~--~~-------~~~~v~~~~~------ 65 (112)
T cd04625 3 IYTVAPETLLSEAVATMAEQDLGSLVVMER-G-ELVGLLTFREVLQAMAQHGA--GV-------LDTTVRAIMN------ 65 (112)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeEEEeeC-C-EEEEEEEHHHHHHHHHhcCC--ch-------hcCCHHHHhC------
Confidence 788999999999999998888877777665 6 99999999999987542110 00 0123444443
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
..+.++.+++++.+++++|.+++..++||+| +|+++|+||.+||++
T Consensus 66 ----~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 66 ----PEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred ----CCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 3788999999999999999999999999998 599999999999986
No 86
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.37 E-value=4.7e-12 Score=102.16 Aligned_cols=105 Identities=33% Similarity=0.513 Sum_probs=87.3
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++..++++.++++.|.+.++..+||+|++| +++|+++.+|+..... . ..++.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~-~~~G~v~~~~l~~~~~-~--------------~~~v~~~~~------ 61 (110)
T cd04601 4 PITVSPDATVAEALELMAEYGISGLPVVDDDG-KLVGIVTNRDLRFETD-L--------------DKPVSEVMT------ 61 (110)
T ss_pred CeEeCCCCcHHHHHHHHHHcCCceEEEEcCCC-EEEEEEEhhHeeeccc-C--------------CCCHHHhcc------
Confidence 78889999999999999999999999999887 9999999999864311 0 012344433
Q ss_pred CCCcCCceeecC-CCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSR-NHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~-~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
..+..+.. ++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 62 ----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 62 ----PENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred ----cCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 24566666 999999999999999999999998899999999999985
No 87
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.37 E-value=6.8e-12 Score=101.16 Aligned_cols=108 Identities=33% Similarity=0.460 Sum_probs=87.4
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++..++++.++.+.|.+.+++.+||+|+ + +++|+++..|+.+.+...... +..++.+++.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~-~~~G~v~~~dl~~~~~~~~~~----------~~~~~~~~~~------ 64 (110)
T cd04609 3 VVSVAPDDTVSQAIERMREYGVSQLPVVDD-G-RVVGSIDESDLLDALIEGKAK----------FSLPVREVMG------ 64 (110)
T ss_pred cEEECCCCcHHHHHHHHHHcCCceeeEeeC-C-eeEEEEeHHHHHHHHhccccc----------cCcCHHHHhc------
Confidence 788999999999999999999999999998 7 999999999999876432110 0112333433
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR 401 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~ 401 (426)
.++.++++++++.+++++|.+ . +.+||++++|+++|+||++||+++
T Consensus 65 ----~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 65 ----EPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLKY 110 (110)
T ss_pred ----CCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhcC
Confidence 377899999999999999988 3 357899888999999999999863
No 88
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.37 E-value=1.2e-11 Score=126.03 Aligned_cols=177 Identities=24% Similarity=0.359 Sum_probs=130.0
Q ss_pred chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccc
Q 014353 180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSE 259 (426)
Q Consensus 180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~ 259 (426)
.++++|.. +++++.+++++.++++.|.+++++++||+| ++++++|+++..|+..... ...++.+
T Consensus 88 ~~~dim~~----~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd-~~g~lvGiVt~~DL~~~~~-----------~~~~V~d 151 (486)
T PRK05567 88 RSESGVVT----DPVTVTPDTTLAEALALMARYGISGVPVVD-ENGKLVGIITNRDVRFETD-----------LSQPVSE 151 (486)
T ss_pred hhhhcccC----CCeEeCCCCCHHHHHHHHHHhCCCEEEEEc-cCCEEEEEEEHHHhhhccc-----------CCCcHHH
Confidence 45666765 889999999999999999999999999999 5899999999999854211 1245666
Q ss_pred cccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHH
Q 014353 260 IGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVR 339 (426)
Q Consensus 260 ~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~ 339 (426)
+|+..+++++.+++++.++++.|.+++++.+||+|+++ +++|+||.+||++.........+
T Consensus 152 ----im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g-~lvGiIT~~DLl~~~~~p~a~~d-------------- 212 (486)
T PRK05567 152 ----VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNG-RLKGLITVKDIEKAEEFPNACKD-------------- 212 (486)
T ss_pred ----HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEEhHHhhhhhhCCCcccc--------------
Confidence 77633589999999999999999999999999999988 99999999999988643211000
Q ss_pred HHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcC-CCcEEEEEeHHHHHHH
Q 014353 340 KYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDF-NGNLEGVITLRDIISR 401 (426)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~-~~~liGvIT~~Dll~~ 401 (426)
..+..+....+.+.+ .-.+.++.|.+.+++.+ |+|. +|+..|+++.-+.++.
T Consensus 213 -------~~g~l~V~aai~~~~--~~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 213 -------EQGRLRVGAAVGVGA--DNEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred -------cCCCEEEEeecccCc--chHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence 000000011222223 22788889999999955 6664 5777776665555544
No 89
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.37 E-value=4e-12 Score=128.47 Aligned_cols=125 Identities=26% Similarity=0.391 Sum_probs=104.4
Q ss_pred hhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHh-----cCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccc
Q 014353 251 SWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRR-----KKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHD 325 (426)
Q Consensus 251 ~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~-----~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~ 325 (426)
.+...++++ +|+++ +++++++.++.++++.|.+ ++...++|+|+++ +++|+++.+|++... ++
T Consensus 127 ~~~e~tvg~----iMt~~-~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~-~l~GvV~l~dLl~a~--~~---- 194 (449)
T TIGR00400 127 SYSDDSAGR----IMTIE-YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESK-HLKGVLSIRDLILAK--PE---- 194 (449)
T ss_pred CCCcchHHH----hCcCc-eEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCC-eEEEEEEHHHHhcCC--CC----
Confidence 345667787 89875 9999999999999999975 4567889999887 999999999997531 11
Q ss_pred cccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 326 YRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 326 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
.+++++|. +++.++++++++.++++.|.+++...+||||++|+++|+||.+|+++.+..+
T Consensus 195 ----------~~v~~im~----------~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~ 254 (449)
T TIGR00400 195 ----------EILSSIMR----------SSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE 254 (449)
T ss_pred ----------CcHHHHhC----------CCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh
Confidence 12454443 3788999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 014353 406 PP 407 (426)
Q Consensus 406 ~~ 407 (426)
..
T Consensus 255 ~~ 256 (449)
T TIGR00400 255 AT 256 (449)
T ss_pred hH
Confidence 54
No 90
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=1.3e-11 Score=104.11 Aligned_cols=133 Identities=16% Similarity=0.229 Sum_probs=96.7
Q ss_pred ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353 65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG 144 (426)
Q Consensus 65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g 144 (426)
+++++++++++.+|++.|.++++..+||+|++ ++++|+++..|++.++........ .+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~--------~~~~Giv~~~dl~~~~~~~~~~~~--------------~~ 59 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN--------GKPVGVITYRDLAFAEFEDNERGL--------------PK 59 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCC--------CCEEEEEeHHHHHHHhhccccccc--------------ch
Confidence 56789999999999999999999999999998 899999999999876542210000 00
Q ss_pred CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353 145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE 224 (426)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~ 224 (426)
.. | ...... . ... .........++.++|.. ++..+.+++++.+++..|.+++.+++||++ +
T Consensus 60 ~~-~-~~~~~~----~----~~~---~~~~~~~~~~v~~~~~~----~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~--~ 120 (135)
T cd04621 60 KS-I-KMKRKA----G----QKR---YRYVKEVPLVAEDIMTE----EIITVSPNDDVVDAAKLMLEANISGLPVVD--N 120 (135)
T ss_pred hh-h-hhhhhc----c----ccc---ccccccccccHHHhcCC----CCeEECCCCCHHHHHHHHHHcCCCEEEEEe--C
Confidence 00 0 000000 0 000 00001224468889876 788999999999999999999999999999 3
Q ss_pred CeEEEEEeHHHHHH
Q 014353 225 GTIDNIITQSSVIH 238 (426)
Q Consensus 225 ~~l~Giis~~Dl~~ 238 (426)
++++|+|+..|+++
T Consensus 121 ~~~~Gvit~~di~~ 134 (135)
T cd04621 121 DNIVGVITKTDICR 134 (135)
T ss_pred CEEEEEEEHHHHhh
Confidence 89999999999875
No 91
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.37 E-value=8.1e-12 Score=121.27 Aligned_cols=121 Identities=21% Similarity=0.330 Sum_probs=104.8
Q ss_pred ccchhhhccccccCC--cEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccc
Q 014353 178 NTKVRDIAGSFRWAP--FLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKK 255 (426)
Q Consensus 178 ~~~v~~i~~~~~~~~--~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~ 255 (426)
..+|+++|.. . +.++.+++++.++.+.|.+.+...+||+| ++++++|+++..|+.+.+...... ..
T Consensus 196 ~~~V~~im~~----~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd-~~g~~iG~vt~~dl~~~~~~~~~~-------~~ 263 (321)
T PRK11543 196 LNKVHHLMRR----DDAIPQVALTASVMDAMLELSRTGLGLVAVCD-AQQQVQGVFTDGDLRRWLVGGGAL-------TT 263 (321)
T ss_pred HhHHHHHhcc----CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEecHHHHHHHHhCCCCc-------CC
Confidence 5689999987 5 88999999999999999988889999999 489999999999998766432111 24
Q ss_pred cccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHH
Q 014353 256 KLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFL 316 (426)
Q Consensus 256 ~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~ 316 (426)
++.+ +|.++ +.++.+++++.++++.|.+++...+||+|+++ +++|+||..|++++
T Consensus 264 ~v~~----im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~lvGvIt~~di~~~ 318 (321)
T PRK11543 264 PVNE----AMTRG-GTTLQAQSRAIDAKEILMKRKITAAPVVDENG-KLTGAINLQDFYQA 318 (321)
T ss_pred cHHH----hcCCC-CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHhc
Confidence 5666 78765 88999999999999999999999999999888 99999999999875
No 92
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.37 E-value=1.4e-11 Score=100.44 Aligned_cols=111 Identities=24% Similarity=0.385 Sum_probs=92.9
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
++..+.+++++.++++.|.+.+.+.+||+| ++++++|+++..|+...+....... ..++.+ +|..+ +.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~~G~v~~~dl~~~~~~~~~~~------~~~~~~----~~~~~-~~ 69 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVD-RDGGVVGIITLPDLLRALEADEAGE------PSAVDE----VATPP-LL 69 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEc-CCCCEEEEEEHHHHHHHHhcccccc------cccHHH----hccCC-ce
Confidence 456788999999999999999999999999 4799999999999988765321111 223555 56654 89
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCC--CCeEEEEEeHHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKG--GNKAVGNISLRDIQF 315 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~--~~~lvGiIs~~Dl~~ 315 (426)
++.+++++.++++.|.+++...+||+|++ | +++|+||.+|+++
T Consensus 70 ~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~-~~~Gvit~~di~~ 114 (115)
T cd04593 70 TVHPDEPLAHALDRMASRGLRQLPVVDRGNPG-QVLGLLTRENVLL 114 (115)
T ss_pred EECCCCCHHHHHHHHHHcCCceeeEEeCCCCC-eEEEEEEhHHhhc
Confidence 99999999999999999999999999987 6 9999999999975
No 93
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=1e-11 Score=99.70 Aligned_cols=103 Identities=32% Similarity=0.457 Sum_probs=88.4
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
++++..+.++.++++.|.+.+...+||+|+ + +++|+++..|++... . ..++.+++.
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~-~~~g~v~~~~l~~~~--~--------------~~~~~~~~~------ 59 (107)
T cd04610 4 VITVSPDNTVKDVIKLIKETGHDGFPVVDN-G-KVVGIVSARDLLGKD--P--------------DETVEEIMS------ 59 (107)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeeeEeEC-C-EEEEEEEHHHhhccC--c--------------cccHHHhCC------
Confidence 788999999999999999888889999997 7 999999999997531 0 112444443
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
..+.++.+++++.++++.|.+++.+++||+|++|+++|+|+..||++
T Consensus 60 ----~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 60 ----KDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred ----CCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 37889999999999999999999999999998899999999999985
No 94
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.36 E-value=6.6e-12 Score=131.14 Aligned_cols=126 Identities=14% Similarity=0.176 Sum_probs=103.3
Q ss_pred cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHH
Q 014353 254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKN 333 (426)
Q Consensus 254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~ 333 (426)
..++++ +|+++ +.++++++++.++.+.|.+++.+.+||+|+++ +++|+|+.+|+.+.+..... .
T Consensus 446 ~~~V~d----im~~~-~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g-~lvGiVt~~dL~~~l~~~~~----------~ 509 (574)
T PRK01862 446 TTQMRE----LIQPA-QTVVPPTASVADMTRVFLEYPVKYLYVVDDDG-RFRGAVALKDITSDLLDKRD----------T 509 (574)
T ss_pred hCcHHH----HhcCC-CceeCCCCCHHHHHHHHHhCCCceEEEEcCCC-eEEEEEEHHHHHHHhhcccc----------c
Confidence 445666 78765 88999999999999999999999999999988 99999999999886533210 0
Q ss_pred HHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCC--CcEEEEEeHHHHHHHHHhC
Q 014353 334 FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFN--GNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 334 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~--~~liGvIT~~Dll~~l~~~ 405 (426)
...++.+++ .+++.++++++++.+++++|.+++.+++||+|++ ++++|+||++|+++.+.+.
T Consensus 510 ~~~~v~dim----------~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~~ 573 (574)
T PRK01862 510 TDKTAADYA----------HTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRRM 573 (574)
T ss_pred ccchHHHhc----------cCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHhh
Confidence 012344444 4478999999999999999999999999999876 4899999999999998653
No 95
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1.1e-11 Score=100.40 Aligned_cols=109 Identities=21% Similarity=0.333 Sum_probs=93.0
Q ss_pred ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353 65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG 144 (426)
Q Consensus 65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g 144 (426)
+.+++++++++.+|++.|.+.+...+||+|.+ ++++|+++..|+.+.+....
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~--------~~~~G~v~~~~l~~~~~~~~-------------------- 53 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD--------GHLVGLLTRDDLIRALAEGG-------------------- 53 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC--------CcEEEEeeHHHHHHHHHhcC--------------------
Confidence 56789999999999999999999999999987 89999999999987644211
Q ss_pred CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353 145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE 224 (426)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~ 224 (426)
...++.++|.. ++..+.+++++.+++..|.+++.+.+||++ ++
T Consensus 54 --------------------------------~~~~v~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~ 96 (111)
T cd04639 54 --------------------------------PDAPVRGVMRR----DFPTVSPSATLDAVLRLMQQGGAPAVPVVD-GS 96 (111)
T ss_pred --------------------------------CCCcHHHHhcC----CCcEECCCCcHHHHHHHHHhcCCceeeEEc-CC
Confidence 11246677765 788999999999999999999999999998 36
Q ss_pred CeEEEEEeHHHHHH
Q 014353 225 GTIDNIITQSSVIH 238 (426)
Q Consensus 225 ~~l~Giis~~Dl~~ 238 (426)
++++|++|..|+.+
T Consensus 97 ~~~~G~it~~dl~~ 110 (111)
T cd04639 97 GRLVGLVTLENVGE 110 (111)
T ss_pred CCEEEEEEHHHhhc
Confidence 89999999999864
No 96
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.36 E-value=1.2e-11 Score=100.43 Aligned_cols=113 Identities=27% Similarity=0.430 Sum_probs=95.1
Q ss_pred CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhh
Q 014353 64 SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVN 143 (426)
Q Consensus 64 ~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (426)
|++.++++++++.+|++.|.++++..+||+|++ ++++|+++..|+..++....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~G~v~~~~l~~~~~~~~------------------- 53 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDD--------GRLVGIVSLDDIREILFDPS------------------- 53 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECCC--------CCEEEEEEHHHHHHHHhccc-------------------
Confidence 467899999999999999999999999999987 89999999999986543210
Q ss_pred cCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCC
Q 014353 144 GMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLG 223 (426)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~ 223 (426)
.....++.++|.. ++.++.+++++.+++..|.+.+.+++||++.+
T Consensus 54 -------------------------------~~~~~~v~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~ 98 (114)
T cd04613 54 -------------------------------LYDLVVASDIMTK----PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDD 98 (114)
T ss_pred -------------------------------ccccEEHHHhccC----CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCC
Confidence 0112467788876 78899999999999999999999999999821
Q ss_pred CCeEEEEEeHHHHHH
Q 014353 224 EGTIDNIITQSSVIH 238 (426)
Q Consensus 224 ~~~l~Giis~~Dl~~ 238 (426)
.++++|+++..|++.
T Consensus 99 ~~~~~Gvvt~~di~~ 113 (114)
T cd04613 99 PGKLLGILSRSDLLS 113 (114)
T ss_pred CCEEEEEEEhHHhhc
Confidence 589999999999864
No 97
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=7.5e-12 Score=105.37 Aligned_cols=127 Identities=24% Similarity=0.428 Sum_probs=97.5
Q ss_pred CCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhh
Q 014353 63 PSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAV 142 (426)
Q Consensus 63 ~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~ 142 (426)
+++++++++++++.+|++.|.++++..+||+|++ ++++|+++..|+.......... ..
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~--------~~~~Gvi~~~dl~~~~~~~~~~-~~------------- 58 (135)
T cd04586 1 TTDVVTVSPETSVAEAARLMLDNHISGLPVVDDD--------GRLVGIVSEGDLLRRAELGTER-RR------------- 58 (135)
T ss_pred CCCCEEeCCCCCHHHHHHHHHHcCCCCceEECCC--------CCEEEEeeHHHHHHHhcccCcc-hh-------------
Confidence 3578899999999999999999999999999987 8999999999998654321100 00
Q ss_pred hcCccccccccCCCCcccccccchhhcccccc-------cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCc
Q 014353 143 NGMSKAALFKDLGPESASMTSGNFFEALTTSE-------FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMK 215 (426)
Q Consensus 143 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~ 215 (426)
..|...+.... .....++.++|.. ++..+.+++++.+++..|.+++.+
T Consensus 59 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~ 113 (135)
T cd04586 59 ---------------------ARWLDLLAGAEELAAAFVRSHGRKVADVMTR----PVVTVGEDTPLAEVAELMEEHRIK 113 (135)
T ss_pred ---------------------hhHHHHhcchHHHHHHHHHhcCCCHHHHhCC----CceEeCCCCcHHHHHHHHHHcCCC
Confidence 00000000000 1123468888876 788999999999999999999999
Q ss_pred EeEEEeCCCCeEEEEEeHHHHHH
Q 014353 216 SIPVVDLGEGTIDNIITQSSVIH 238 (426)
Q Consensus 216 ~ipVvd~~~~~l~Giis~~Dl~~ 238 (426)
.+||+| +|+++|++|..|+++
T Consensus 114 ~l~Vvd--~g~~~Gvit~~di~~ 134 (135)
T cd04586 114 RVPVVR--GGRLVGIVSRADLLR 134 (135)
T ss_pred ccCEec--CCEEEEEEEhHhhhc
Confidence 999999 689999999999875
No 98
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.36 E-value=1.6e-11 Score=98.45 Aligned_cols=100 Identities=27% Similarity=0.435 Sum_probs=85.8
Q ss_pred eEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCC
Q 014353 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDS 350 (426)
Q Consensus 271 ~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 350 (426)
+++.+++++.++++.|.+.+++.+||+|+ + +++|+++..|+.+... .++.+++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~-~~~G~v~~~~l~~~~~-----------------~~~~~~~-------- 56 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-N-KFLGAVYLKDIENATY-----------------GDVVDYI-------- 56 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-C-EEEEEEEHHHHhhhcc-----------------cchhhhh--------
Confidence 56789999999999999999999999998 7 9999999999976411 0123233
Q ss_pred CCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 351 PLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 351 ~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
...+.++.+++++.++++.|.+++...+||+| +|+++|+||..|+++
T Consensus 57 --~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 57 --VRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred --hcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 33688999999999999999999999999998 699999999999975
No 99
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1.1e-11 Score=103.15 Aligned_cols=126 Identities=23% Similarity=0.337 Sum_probs=96.6
Q ss_pred CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhh
Q 014353 64 SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVN 143 (426)
Q Consensus 64 ~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (426)
++++.+.+++++.+|+++|.++++..+||+|++ ++++|+++..|+...+..........
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~--------~~~~G~it~~dl~~~~~~~~~~~~~~------------- 59 (128)
T cd04632 1 EDVITVREDDSVGKAINVLREHGISRLPVVDDN--------GKLTGIVTRHDIVDFVVRDRDKARTG------------- 59 (128)
T ss_pred CCceEeCCCCCHHHHHHHHHHcCCCEEEEECCC--------CcEEEEEEHHHHHHHHhhhhhhcchh-------------
Confidence 357889999999999999999999999999998 89999999999987644321100000
Q ss_pred cCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeC-
Q 014353 144 GMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDL- 222 (426)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~- 222 (426)
+ . + .........++.++|.. +++++.++.++.+++..|.+.+.+.+||++.
T Consensus 60 ~---------~---~------------~~~~~~~~~~~~~~~~~----~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~ 111 (128)
T cd04632 60 D---------R---S------------GEKERMLDLPVYDAMSS----PVITASPNDSVRDAVDRMLENDDSSVVVVTPD 111 (128)
T ss_pred h---------h---h------------hhhhhhccCcHHHHhcC----CCceECCCCcHHHHHHHHHhCCCCeEeEeccC
Confidence 0 0 0 00011223467788876 8889999999999999999999999999852
Q ss_pred CCCeEEEEEeHHHHHH
Q 014353 223 GEGTIDNIITQSSVIH 238 (426)
Q Consensus 223 ~~~~l~Giis~~Dl~~ 238 (426)
++++++|+||..|+++
T Consensus 112 ~~~~~~Gvit~~di~~ 127 (128)
T cd04632 112 DDTKVVGILTKKDVLR 127 (128)
T ss_pred CCCcEEEEEEhHhhhc
Confidence 4689999999999875
No 100
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=2.3e-11 Score=98.22 Aligned_cols=107 Identities=27% Similarity=0.473 Sum_probs=92.0
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
++..+.+++++.++++.|.+++...+||+| ++++++|+++..++++.+.... .++.+ +|... +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~~G~v~~~~l~~~~~~~~----------~~~~~----~~~~~-~~ 66 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVD-EDGRLVGIVTSWDISKAVARDK----------KSVED----IMTRN-VI 66 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEEC-CCCcEEEEEeHHHHHHHHhhCc----------cCHHH----hcCCC-Ce
Confidence 667889999999999999999999999999 4799999999999987664321 23555 56554 88
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
++.+++++.++++.|.+++.+.+||++++| +++|+|+..|+.+
T Consensus 67 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~G~v~~~di~~ 109 (110)
T cd04605 67 TATPDEPIDVAARKMERHNISALPVVDAEN-RVIGIITSEDISK 109 (110)
T ss_pred EECCCCcHHHHHHHHHHhCCCEEeEECCCC-cEEEEEEHHHhhh
Confidence 999999999999999999999999999887 9999999999964
No 101
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=2.2e-11 Score=103.73 Aligned_cols=126 Identities=29% Similarity=0.381 Sum_probs=95.0
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccc--------------ccccHHHHH
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDY--------------RSITAKNFL 335 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~--------------~~~~~~~~~ 335 (426)
++++.+++++.++++.|.+.+++.+||+|+ + +++|+++.+|+.+.+.....+... ....+.+..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~-~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 3 PITCNADDTISDAARLLRENKISGAPVLDG-G-KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred cEEecCCCCHHHHHHHHHHcCCCcceEeEC-C-eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 788999999999999999999999999998 7 999999999999876432211100 001111222
Q ss_pred HHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 336 TAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 336 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
....+.. ..++..+|..++.++.+++++.++++.|.+++.+++||+++ |+++|+||..|++.
T Consensus 81 ~~~~~~~--~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAG--KMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHh--cCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 2111110 11334455668999999999999999999999999999997 99999999999974
No 102
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.6e-11 Score=101.08 Aligned_cols=120 Identities=24% Similarity=0.378 Sum_probs=96.5
Q ss_pred ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353 65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG 144 (426)
Q Consensus 65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g 144 (426)
+++++.+++++.+|++.|.+.++..+||+|++ |+++|+++..|+...+........ .+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~--------~~~~G~v~~~~l~~~~~~~~~~~~--------------~~ 59 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED--------GKLVGLLTQRDLLRAALSSLSDNG--------------EE 59 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC--------CCEEEEEEHHHHHHHhcccccccc--------------cc
Confidence 57889999999999999999999999999987 899999999999876543211000 00
Q ss_pred CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353 145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE 224 (426)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~ 224 (426)
. .......++.+++.. ++..+.+++++.++++.|.+++.+.+||++. +
T Consensus 60 ---------------------~------~~~~~~~~v~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~ 107 (122)
T cd04803 60 ---------------------S------LTKERDVPVAEVMKT----DVLTVTPDTPLREAAEIMVENKIGCLPVVDD-K 107 (122)
T ss_pred ---------------------c------cccccCcCHHHhhCC----CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-C
Confidence 0 011234467788876 7889999999999999999999999999993 6
Q ss_pred CeEEEEEeHHHHHH
Q 014353 225 GTIDNIITQSSVIH 238 (426)
Q Consensus 225 ~~l~Giis~~Dl~~ 238 (426)
++++|++|..|++.
T Consensus 108 ~~~~Gvit~~dl~~ 121 (122)
T cd04803 108 GTLVGIITRSDFLR 121 (122)
T ss_pred CCEEEEEEHHHhhc
Confidence 89999999999875
No 103
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.35 E-value=1.8e-11 Score=124.70 Aligned_cols=171 Identities=18% Similarity=0.279 Sum_probs=126.9
Q ss_pred CCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHh
Q 014353 62 PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAA 141 (426)
Q Consensus 62 ~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~ 141 (426)
|.++++++++++++.+|+++|.++++..+||+|++ ++++|+|+..|+... .+
T Consensus 93 m~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~--------g~lvGiVt~~DL~~~----~~---------------- 144 (486)
T PRK05567 93 VVTDPVTVTPDTTLAEALALMARYGISGVPVVDEN--------GKLVGIITNRDVRFE----TD---------------- 144 (486)
T ss_pred ccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC--------CEEEEEEEHHHhhhc----cc----------------
Confidence 67899999999999999999999999999999987 899999999999521 00
Q ss_pred hhcCccccccccCCCCcccccccchhhcccccccccccchhhhcc-ccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEE
Q 014353 142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAG-SFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVV 220 (426)
Q Consensus 142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~-~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVv 220 (426)
...++.++|. . +++++.+++++.+++..|.+++++.+||+
T Consensus 145 -----------------------------------~~~~V~dim~~~----~~v~v~~~~sl~eal~~m~~~~~~~lpVV 185 (486)
T PRK05567 145 -----------------------------------LSQPVSEVMTKE----RLVTVPEGTTLEEALELLHEHRIEKLPVV 185 (486)
T ss_pred -----------------------------------CCCcHHHHcCCC----CCEEECCCCCHHHHHHHHHHcCCCEEEEE
Confidence 1235778886 4 78899999999999999999999999999
Q ss_pred eCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeC-
Q 014353 221 DLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEK- 299 (426)
Q Consensus 221 d~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~- 299 (426)
| ++++++|++|..|+++.+....... .......+.. .| ...+ .-.+..+.|.+.++.. +++|.
T Consensus 186 D-e~g~lvGiIT~~DLl~~~~~p~a~~--d~~g~l~V~a----ai------~~~~--~~~e~a~~L~~agvdv-ivvD~a 249 (486)
T PRK05567 186 D-DNGRLKGLITVKDIEKAEEFPNACK--DEQGRLRVGA----AV------GVGA--DNEERAEALVEAGVDV-LVVDTA 249 (486)
T ss_pred c-CCCcEEEEEEhHHhhhhhhCCCccc--ccCCCEEEEe----ec------ccCc--chHHHHHHHHHhCCCE-EEEECC
Confidence 9 4899999999999998863210000 0000111111 22 2223 2278888888999984 46665
Q ss_pred CCCeEEEEEeHHHHHHH
Q 014353 300 GGNKAVGNISLRDIQFL 316 (426)
Q Consensus 300 ~~~~lvGiIs~~Dl~~~ 316 (426)
++ +..++++.-+.++.
T Consensus 250 ~g-~~~~vl~~i~~i~~ 265 (486)
T PRK05567 250 HG-HSEGVLDRVREIKA 265 (486)
T ss_pred CC-cchhHHHHHHHHHh
Confidence 45 77777766555554
No 104
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.7e-11 Score=102.81 Aligned_cols=130 Identities=25% Similarity=0.378 Sum_probs=96.3
Q ss_pred ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353 65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG 144 (426)
Q Consensus 65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g 144 (426)
+++++++++++.+|++.|.++++..+||+|++ ++++|+++..|++.++......... .+
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~--------~~~~G~i~~~~l~~~~~~~~~~~~~-------------~~ 60 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE--------GRVVGIVSEGDLIRKIYKGKGLFYV-------------TL 60 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC--------CCEEEEEeHHHHHHHHhccCCcccc-------------cc
Confidence 56889999999999999999999999999987 8999999999998765432110000 00
Q ss_pred CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353 145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE 224 (426)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~ 224 (426)
. ....... +. ........++.++|.. ++..+.+++++.+++..|.+.+.+.+||++ +
T Consensus 61 ~-----~~~~~~~------~~------~~~~~~~~~v~~~~~~----~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~- 117 (132)
T cd04636 61 L-----YSVIFLD------ES------KIKKLLGKKVEEIMTK----KVITVDEDTTIEDVARIMSKKNIKRLPVVD-D- 117 (132)
T ss_pred c-----ccccccc------hH------HHHHHcCCCHHHhccC----CceEECCCCcHHHHHHHHHHCCCCeeEEEE-C-
Confidence 0 0000000 00 0111222367788875 788899999999999999999999999999 4
Q ss_pred CeEEEEEeHHHHHH
Q 014353 225 GTIDNIITQSSVIH 238 (426)
Q Consensus 225 ~~l~Giis~~Dl~~ 238 (426)
++++|++|..|+++
T Consensus 118 ~~~iGvit~~dl~~ 131 (132)
T cd04636 118 GKLVGIISRGDIIR 131 (132)
T ss_pred CEEEEEEEHHHhhc
Confidence 99999999999875
No 105
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.35 E-value=3.4e-11 Score=121.38 Aligned_cols=180 Identities=18% Similarity=0.208 Sum_probs=130.6
Q ss_pred cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcc
Q 014353 175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK 254 (426)
Q Consensus 175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~ 254 (426)
.....++.++|.. +++++.+++++.+++..|.+++++.+||+| ++++++|+|+..|+... . ..
T Consensus 85 ~l~~VKv~~iMi~----~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD-~~gklvGIVT~rDL~~~-~-----------~~ 147 (479)
T PRK07807 85 VVAWVKSRDLVFD----TPVTLSPDDTVGDALALLPKRAHGAVVVVD-EEGRPVGVVTEADCAGV-D-----------RF 147 (479)
T ss_pred HHhhccccccccc----CCeEECCCCCHHHHHHHHHhcCCceEEEEC-CCCeEEEEEeHHHHhcC-c-----------cC
Confidence 3445567788876 888999999999999999999999999999 48899999999997321 0 02
Q ss_pred ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHH
Q 014353 255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNF 334 (426)
Q Consensus 255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~ 334 (426)
.++.+ +|+.+ ++++.+++++.++++.|.+++++.+||+|+++ +++|+||.+||++....+..+..-.
T Consensus 148 ~~V~d----iMt~~-~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g-~lvGIIT~~DIl~~~~~~~~~~~~g------- 214 (479)
T PRK07807 148 TQVRD----VMSTD-LVTLPAGTDPREAFDLLEAARVKLAPVVDADG-RLVGVLTRTGALRATIYTPAVDAAG------- 214 (479)
T ss_pred CCHHH----hccCC-ceEECCCCcHHHHHHHHHhcCCCEEEEEcCCC-eEEEEEEHHHHHHHhhCCchhhhhh-------
Confidence 45677 78864 99999999999999999999999999999888 9999999999999865442111000
Q ss_pred HHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcC-CCcEEEEEeHHHHHHHHHhC
Q 014353 335 LTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDF-NGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 335 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~-~~~liGvIT~~Dll~~l~~~ 405 (426)
...+. .. +.......+.++.|.+.+++.+ ++|. +|+ -...-+.++.+..+
T Consensus 215 ~l~V~---------------aa--v~~~~~~~~~a~~Lv~aGvd~i-~~D~a~~~---~~~~~~~i~~ik~~ 265 (479)
T PRK07807 215 RLRVA---------------AA--VGINGDVAAKARALLEAGVDVL-VVDTAHGH---QEKMLEALRAVRAL 265 (479)
T ss_pred ccchH---------------hh--hccChhHHHHHHHHHHhCCCEE-EEeccCCc---cHHHHHHHHHHHHH
Confidence 00011 11 2223346677778888888774 5564 333 33444555555544
No 106
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.35 E-value=4.7e-12 Score=117.61 Aligned_cols=117 Identities=23% Similarity=0.359 Sum_probs=102.7
Q ss_pred cccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHH
Q 014353 256 KLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNF 334 (426)
Q Consensus 256 ~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~ 334 (426)
.+.+ +|.| ++..+...++++.+..++..+.+.+++||+|... +++|+++.+|+......
T Consensus 189 ~Ved----i~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~-kvvGvVt~rDv~~~~~~--------------- 248 (432)
T COG4109 189 TVED----IMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSM-KVVGVVTMRDVLDKKPS--------------- 248 (432)
T ss_pred eHHH----hccccccceeccccccHHHHHHHHHHcCCCccceecccc-eEEEEEEehhhhcCCCC---------------
Confidence 4555 7775 4578999999999999999999999999999988 99999999999877321
Q ss_pred HHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353 335 LTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV 403 (426)
Q Consensus 335 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~ 403 (426)
.++.+ +|+++|.++.+.+|+..+.++|...++.-+||+|++++++|+||++|+++.+.
T Consensus 249 -t~ieK----------VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 249 -TTIEK----------VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred -ccHHH----------HhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence 23444 45559999999999999999999999999999999999999999999999985
No 107
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.35 E-value=2.2e-11 Score=122.32 Aligned_cols=135 Identities=22% Similarity=0.351 Sum_probs=114.7
Q ss_pred hhccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccc
Q 014353 251 SWGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSI 329 (426)
Q Consensus 251 ~~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~ 329 (426)
.+.+.++++ +|+| .++.+++.+.++.++.+.+.+++++++||++++.+.++|++..+|++....++.. ..
T Consensus 202 ~l~~~~v~e----iMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~~---- 272 (429)
T COG1253 202 DLDDRTVRE----IMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-DL---- 272 (429)
T ss_pred ccCCcEeee----EeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-cc----
Confidence 355788888 8988 5699999999999999999999999999999655699999999999999765531 00
Q ss_pred cHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCc
Q 014353 330 TAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGY 409 (426)
Q Consensus 330 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~ 409 (426)
.... .-+++..++++.++.++++.|.+.+.|-..|+|+.|.+.|+||+.||+..+++++...
T Consensus 273 ---~~~~---------------~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de 334 (429)
T COG1253 273 ---DLRV---------------LVRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDE 334 (429)
T ss_pred ---chhh---------------cccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCc
Confidence 0000 0118899999999999999999999999999999999999999999999999999876
Q ss_pred ccc
Q 014353 410 FGD 412 (426)
Q Consensus 410 ~~~ 412 (426)
.+.
T Consensus 335 ~d~ 337 (429)
T COG1253 335 HDE 337 (429)
T ss_pred ccc
Confidence 653
No 108
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=2.3e-11 Score=98.77 Aligned_cols=111 Identities=21% Similarity=0.300 Sum_probs=92.8
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
++..+.+++++.++++.|.+.+...+||+|. +++++|+++..|+.+.+..... +...++.+ +|..+ +.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~dl~~~~~~~~~------~~~~~i~~----~~~~~-~~ 69 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDD-KKRLVGIITRYDVLSYALESEE------LKDAKVRE----VMNSP-VI 69 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcC-CCCEEEEEEHHHHHHhhhhhhh------hcCCcHHH----hccCC-ce
Confidence 3567889999999999999999999999994 7899999999999876543211 11345666 67654 89
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
++..++++.++++.|.+++...+||+|++| +++|+++..|+++
T Consensus 70 ~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g-~~~Gvvt~~dl~~ 112 (113)
T cd04615 70 TIDANDSIAKARWLMSNNNISRLPVLDDKG-KVGGIVTEDDILR 112 (113)
T ss_pred EECCCCcHHHHHHHHHHcCCCeeeEECCCC-eEEEEEEHHHhhc
Confidence 999999999999999999999999999887 9999999999864
No 109
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.34 E-value=5.2e-12 Score=124.31 Aligned_cols=118 Identities=18% Similarity=0.405 Sum_probs=106.2
Q ss_pred CCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHh
Q 014353 62 PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAA 141 (426)
Q Consensus 62 ~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~ 141 (426)
++.+.+++++.+|+.+|.+.|.++++.++.|+|.+ +...||||.+|+...++..
T Consensus 155 ~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~--------~~~~GIvT~~dl~~~v~~~------------------ 208 (610)
T COG2905 155 KTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDS--------GPLLGIVTRKDLRSRVIAD------------------ 208 (610)
T ss_pred hcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCC--------CCccceeehHHHHHHHHhc------------------
Confidence 47899999999999999999999999999999988 8999999999999887642
Q ss_pred hhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEe
Q 014353 142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVD 221 (426)
Q Consensus 142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd 221 (426)
|. -...+|+++|+. |++++..++.+.+|.-+|.+++++++||++
T Consensus 209 --g~------------------------------~~~~~V~evmT~----p~~svd~~~~~feAml~m~r~~I~hl~V~e 252 (610)
T COG2905 209 --GR------------------------------SKTQKVSEVMTS----PVISVDRGDFLFEAMLMMLRNRIKHLPVTE 252 (610)
T ss_pred --CC------------------------------Ccccchhhhhcc----CceeecCcchHHHHHHHHHHhCCceeeeec
Confidence 11 124579999998 999999999999999999999999999998
Q ss_pred CCCCeEEEEEeHHHHHHHHHhc
Q 014353 222 LGEGTIDNIITQSSVIHMLAEC 243 (426)
Q Consensus 222 ~~~~~l~Giis~~Dl~~~l~~~ 243 (426)
+|+++|++|.+|+++....+
T Consensus 253 --~gq~~Gilt~~dIl~l~s~~ 272 (610)
T COG2905 253 --DGQPLGILTLTDILRLFSQN 272 (610)
T ss_pred --CCeeeEEeeHHHHHHhhCCC
Confidence 79999999999999988654
No 110
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.33 E-value=1.5e-11 Score=123.80 Aligned_cols=113 Identities=19% Similarity=0.305 Sum_probs=96.1
Q ss_pred CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME 343 (426)
Q Consensus 264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 343 (426)
+|..+ ++++.+++++.++++.|.+++++.+||+|+ + +++|+||.+|+...- . ..++.++|
T Consensus 93 im~~~-pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-g-klvGIVT~rDL~~~~--~--------------~~~V~dIM- 152 (475)
T TIGR01303 93 LVLDT-PITLAPHDTVSDAMALIHKRAHGAAVVILE-D-RPVGLVTDSDLLGVD--R--------------FTQVRDIM- 152 (475)
T ss_pred ccccC-CeEECCCCCHHHHHHHHHhcCCeEEEEEEC-C-EEEEEEEHHHhhcCC--C--------------CCCHHHHc-
Confidence 55554 899999999999999999999999999885 6 899999999984320 0 01344444
Q ss_pred hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
..+++++++++++.++++.|.+++++++||+|++|+++|+||.+||++.....
T Consensus 153 ---------t~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 153 ---------STDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT 205 (475)
T ss_pred ---------cCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence 44899999999999999999999999999999999999999999999987765
No 111
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=3.3e-11 Score=97.68 Aligned_cols=110 Identities=35% Similarity=0.495 Sum_probs=93.4
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
++..+.++.++.+++..|.+++.+++||+| ++++++|+++..|+++.+...... ..++.+ +|... +.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d-~~~~~~G~v~~~~l~~~~~~~~~~-------~~~v~~----~~~~~-~~ 68 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVD-PDERPIGIVTERDIVRAVAAGIDL-------DTPVSE----IMTRD-LV 68 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCCEEEEeeHHHHHHHHhccCCC-------ccCHHH----hccCC-CE
Confidence 466789999999999999989999999999 479999999999998877543211 234555 66654 89
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
++.+++++.++++.|.+++...+||+|++| +++|+++.+|+++
T Consensus 69 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g-~~~Gilt~~dl~~ 111 (112)
T cd04624 69 TVDPDEPVAEAAKLMRKNNIRHHLVVDKGG-ELVGVISIRDLVR 111 (112)
T ss_pred EECCCCcHHHHHHHHHHcCccEEEEEcCCC-cEEEEEEHHHhcc
Confidence 999999999999999999999999999887 9999999999864
No 112
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=1.7e-11 Score=99.83 Aligned_cols=110 Identities=19% Similarity=0.303 Sum_probs=90.5
Q ss_pred CcEEecCCCCHHHHHHHHhhcC-CcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCccc-CC
Q 014353 192 PFLALQKSNSFLTMLLLLSKYK-MKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA-NH 269 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~-~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~-~~ 269 (426)
++.++.++.++.++++.|.+++ .+.+||+| ++++++|+++..|++....... ...++.+ +|.+ ..
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d-~~~~~~G~v~~~dl~~~~~~~~--------~~~~v~~----~~~~~~~ 68 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVD-NEGRYVGIISLADLRAIPTSQW--------AQTTVIQ----VMTPAAK 68 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEc-CCCcEEEEEEHHHHHHHHHhhc--------cccchhh----hhccccc
Confidence 5678899999999999987665 88899999 4789999999999988664221 1234555 5653 23
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
++++.+++++.++++.|.+++.+.+||+|+++ +++|+++.+||++
T Consensus 69 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~-~~~Gvl~~~di~~ 113 (114)
T cd04801 69 LVTVLSEESLAEVLKLLEEQGLDELAVVEDSG-QVIGLITEADLLR 113 (114)
T ss_pred ceEECCCCcHHHHHHHHHHCCCCeeEEEcCCC-cEEEEEeccceec
Confidence 67899999999999999999999999999877 9999999999864
No 113
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=1.6e-11 Score=97.06 Aligned_cols=94 Identities=20% Similarity=0.379 Sum_probs=84.1
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
++..+.+++++.+++..|.++++..+||+| ++++++|+++..|+.... . +.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d-~~~~~~Giv~~~dl~~~~---------------------------~-~~ 52 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLD-DDGKLSGIITERDLIAKS---------------------------E-VV 52 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEEC-CCCCEEEEEEHHHHhcCC---------------------------C-cE
Confidence 566889999999999999999999999999 479999999999986521 1 67
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
++.+++++.++++.|.+++++.+||+|++| +++|+||.+|+++
T Consensus 53 ~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~-~~~Giit~~di~~ 95 (96)
T cd04614 53 TATKRTTVSECAQKMKRNRIEQIPIINGND-KLIGLLRDHDLLK 95 (96)
T ss_pred EecCCCCHHHHHHHHHHhCCCeeeEECCCC-cEEEEEEHHHhhc
Confidence 889999999999999999999999999877 9999999999975
No 114
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=2.5e-11 Score=100.47 Aligned_cols=119 Identities=24% Similarity=0.456 Sum_probs=94.4
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchh-----hhhccccccccccCCcc
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWF-----ESWGKKKLSEIGLPIMS 266 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~-----~~~~~~~v~~~~~~im~ 266 (426)
.+.++.++.++.+++..|.+.+.+.+||+|.++++++|+++..|++.++......... ......++.+ +|.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 77 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRS----IMT 77 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHH----Hhc
Confidence 5667899999999999999999999999994239999999999999877533211100 0011234555 565
Q ss_pred cCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHH
Q 014353 267 ANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFL 316 (426)
Q Consensus 267 ~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~ 316 (426)
.. ++++.+++++.++++.|.+.+.+.+||+|++| +++|+||.+||+++
T Consensus 78 ~~-~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~-~~~Gvit~~di~~~ 125 (125)
T cd04631 78 RN-VITITPDDSIKDAAELMLEKRVGGLPVVDDDG-KLVGIVTERDLLKA 125 (125)
T ss_pred CC-ceEeCCCCcHHHHHHHHHHcCCceEEEEcCCC-cEEEEEEHHHhhcC
Confidence 54 99999999999999999999999999999877 99999999999753
No 115
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.32 E-value=1.1e-11 Score=129.60 Aligned_cols=132 Identities=17% Similarity=0.240 Sum_probs=111.6
Q ss_pred HhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCC
Q 014353 47 LNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEP 126 (426)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~ 126 (426)
.+..++.++++++ |.++..++++++++.+|.+.|.+++...+||+|++ ++++|+|+..|+.+.+....
T Consensus 440 ~~~~L~~~~V~di--m~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~--------g~lvGiVt~~dL~~~l~~~~-- 507 (574)
T PRK01862 440 ERERLRTTQMREL--IQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDD--------GRFRGAVALKDITSDLLDKR-- 507 (574)
T ss_pred hhhHHhhCcHHHH--hcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCC--------CeEEEEEEHHHHHHHhhccc--
Confidence 3556788899998 88889999999999999999999999999999998 89999999999986543211
Q ss_pred CCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHH
Q 014353 127 PSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTML 206 (426)
Q Consensus 127 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l 206 (426)
.....++.++|.. ++.++++++++.+++
T Consensus 508 ------------------------------------------------~~~~~~v~dim~~----~~~~v~~d~~L~~al 535 (574)
T PRK01862 508 ------------------------------------------------DTTDKTAADYAHT----PFPLLTPDMPLGDAL 535 (574)
T ss_pred ------------------------------------------------ccccchHHHhccC----CCeeECCCCCHHHHH
Confidence 0112357788876 788999999999999
Q ss_pred HHHhhcCCcEeEEEeCCC-CeEEEEEeHHHHHHHHHh
Q 014353 207 LLLSKYKMKSIPVVDLGE-GTIDNIITQSSVIHMLAE 242 (426)
Q Consensus 207 ~~l~~~~~~~ipVvd~~~-~~l~Giis~~Dl~~~l~~ 242 (426)
+.|.+++.+.+||+|+++ ++++|++|..|+++.+.+
T Consensus 536 ~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 536 EHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred HHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 999999999999998533 589999999999998753
No 116
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.32 E-value=4e-11 Score=96.36 Aligned_cols=110 Identities=32% Similarity=0.504 Sum_probs=91.7
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++..++++.++++.|.+.+...+||+|+++ +++|+++.+|+......... ... ..+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~G~v~~~~l~~~~~~~~~-~~~---------~~~~~~-------- 63 (113)
T cd02205 3 VVTVSPDDTVAEALRLMLEHGISGLPVVDDDG-RLVGIVTERDLLRALAEGGL-DPL---------VTVGDV-------- 63 (113)
T ss_pred ceEecCCCCHHHHHHHHHhcCCceEEEECCCC-CEEEEEeHHHHHHHHHhccC-Ccc---------ccHHHH--------
Confidence 67889999999999999999999999999877 99999999999987643211 000 002223
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
|..++.++.+++++.++++.|.+.+.+.++|+|++|+++|+||..|+++
T Consensus 64 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 64 --MTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred --hcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 3347889999999999999999999999999999999999999999975
No 117
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.32 E-value=3.1e-11 Score=121.79 Aligned_cols=114 Identities=36% Similarity=0.575 Sum_probs=96.8
Q ss_pred CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC---CCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHH
Q 014353 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG---GNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRK 340 (426)
Q Consensus 264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~---~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~ 340 (426)
.|..+ ++++.+++++.++++.|.+++++++||+|++ + +++|+|+.+|+..... . ..++.+
T Consensus 85 ~~~~~-~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~-~lvGIVt~rDL~~~~~-~--------------~~~V~d 147 (450)
T TIGR01302 85 GIISD-PVTISPETTVADVLELMERKGISGIPVVEDGDMTG-KLVGIITKRDIRFVKD-K--------------GKPVSE 147 (450)
T ss_pred ceecC-ceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCC-eEEEEEEHHHHhhhhc-C--------------CCCHHH
Confidence 45544 8999999999999999999999999999987 5 9999999999975421 0 113444
Q ss_pred HhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353 341 YMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV 403 (426)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~ 403 (426)
+|.. .++.++++++++.++++.|.+++.+.+||+|++|+++|+||++||++.+.
T Consensus 148 vm~~---------~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 148 VMTR---------EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred hhCC---------CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 4431 27899999999999999999999999999999999999999999999863
No 118
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.32 E-value=2.3e-11 Score=97.84 Aligned_cols=99 Identities=24% Similarity=0.358 Sum_probs=87.2
Q ss_pred CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeC---CCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhc
Q 014353 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEK---GGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEH 345 (426)
Q Consensus 269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~---~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 345 (426)
....+.+++++.++.+.|.+.++..+||+|+ ++ +++|+++.+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~-~~~G~v~~~dl~~~~~~-------------------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP-RLVGYILRSQLVVALKN-------------------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCC-EEEEEEeHHHHHHHHHH--------------------------
Confidence 3678899999999999999999999999998 57 99999999999876321
Q ss_pred CCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 346 HHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 346 ~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
+|..++.++++++++.++++.|.+++.+.+||++ +|+++|+||++|+++
T Consensus 56 -----~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 -----YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred -----hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 2334788999999999999999999999999996 789999999999986
No 119
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.32 E-value=4.9e-11 Score=97.31 Aligned_cols=112 Identities=36% Similarity=0.513 Sum_probs=93.9
Q ss_pred CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME 343 (426)
Q Consensus 264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 343 (426)
.|.+ .++++.++.++.++...|.++++.++||++.. +++|++|.+|+.+++..+..... ++..+
T Consensus 4 ~~~~-~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~--~l~Giit~~di~~~~~~~~~~~~-----------~v~~v-- 67 (117)
T COG0517 4 IMTK-DVITVKPDTSVRDALLLMSENGVSAVPVVDDG--KLVGIITERDILRALAAGGKRLL-----------PVKEV-- 67 (117)
T ss_pred cccC-CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC--EEEEEEEHHHHHHHHhccCCccc-----------cHHHh--
Confidence 3444 48999999999999999999999999999863 79999999999999765432100 23333
Q ss_pred hcCCCCCCCcCCceeecCCCCHHHHHHHHHh-CCCcEEEEEcCCC-cEEEEEeHHHHH
Q 014353 344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDS-KKIHRIYVVDFNG-NLEGVITLRDII 399 (426)
Q Consensus 344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~-~~~~~l~Vvd~~~-~liGvIT~~Dll 399 (426)
|..++.++.+++++.++++.|.+ ++++++||+|+++ +++|++|.+|++
T Consensus 68 --------~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 68 --------MTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred --------ccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 34488999999999999999999 7999999999886 999999999974
No 120
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.32 E-value=2.6e-11 Score=98.47 Aligned_cols=111 Identities=23% Similarity=0.374 Sum_probs=93.3
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
.+.++.++.++.++++.|.+.+.+.+||+| ++++++|+++..++.+.+...... ...++.+ +|.+. +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d-~~~~~~G~v~~~~i~~~~~~~~~~------~~~~v~~----~~~~~-~~ 70 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVD-EDGRLVGIFTDGDLRRALEKGLDI------LTLPVAD----VMTRN-PK 70 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEc-CCCCEEEEechHHHHHHHhccCcc------ccCCHHH----hhccC-Ce
Confidence 456788999999999999888889999999 478999999999999877543221 1235666 67664 78
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
++.+++++.++++.|..++.+.+||+|+++ +++|+|+..||++
T Consensus 71 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~iG~it~~di~~ 113 (114)
T cd04604 71 TIDPDALAAEALELMEENKITALPVVDDNG-RPVGVLHIHDLLR 113 (114)
T ss_pred EECCCCcHHHHHHHHHHcCCCEEEEECCCC-CEEEEEEHHHhhc
Confidence 999999999999999999999999999877 9999999999975
No 121
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=3.6e-11 Score=97.46 Aligned_cols=109 Identities=28% Similarity=0.411 Sum_probs=89.1
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++.+++++.++++.|.+.+.+.+||+|+ + +++|+++..|+++.+..+.... ...++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~-~~~G~v~~~dl~~~~~~~~~~~---------~~~~~~~~~------- 64 (112)
T cd04802 3 VITVDPDTTVYEAANIMTENNIGRLIVVDN-E-KPVGIITERDLVKKVVSRNLKP---------REVPVGEVM------- 64 (112)
T ss_pred cEEECCCCCHHHHHHHHHHCCCCEEEEEEC-C-EEEEEEEHHHHHHHHhhccCCc---------ccCCHHHhc-------
Confidence 678899999999999999999999999996 5 8999999999998654321100 011233333
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
..++.++.+++++.++++.|.+++.+.+||+|++ +++|+||..|+++
T Consensus 65 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 65 ---STPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred ---CCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 3378899999999999999999999999999965 9999999999975
No 122
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.32 E-value=3.4e-11 Score=96.58 Aligned_cols=104 Identities=17% Similarity=0.264 Sum_probs=89.1
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
++.++.++.++.+++..|.+++.+.+||+| ++|+++|+++..|+.+... .++.+ +|.+. +.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d-~~g~~~Giv~~~dl~~~~~-------------~~~~~----~~~~~-~~ 62 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVD-ADGQPLGFVTRREAARASG-------------GCCGD----HAEPF-KV 62 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEEC-CCCCEEEEEeHHHHHHhcc-------------cchhh----hcccC-CE
Confidence 456788999999999999989999999998 4799999999999986421 13445 56654 78
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
++.+++++.++++.|.++++..+||+|+++ +++|+|+.+|++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvi~~~~l~~ 105 (106)
T cd04582 63 TVSVDDDLRIVLSRMFAHDMSWLPCVDEDG-RYVGEVTQRSIAD 105 (106)
T ss_pred EECCCCCHHHHHHHHHHCCCCeeeEECCCC-cEEEEEEHHHhhc
Confidence 899999999999999999999999999887 9999999999875
No 123
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.32 E-value=1.2e-11 Score=125.38 Aligned_cols=110 Identities=24% Similarity=0.325 Sum_probs=92.5
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeC---CCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEK---GGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHH 346 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~---~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 346 (426)
++++.+++++.++++.|.+++++.+||+|+ ++ +++|+||..|+.... . ....++.++|..
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g-kLvGIVT~~DLr~~~--~------------~~~~~V~dIMt~-- 169 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG-KLLGIVTSRDYRISR--M------------SLDTKVKDFMTP-- 169 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC-EEEEEEEcHHhhccc--c------------CCCCCHHHHhCC--
Confidence 579999999999999999999999999997 46 999999999996431 0 011234555432
Q ss_pred CCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 014353 347 HEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRL 402 (426)
Q Consensus 347 ~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l 402 (426)
.++++++.+++++.+|+++|.++++.++||+|++|+++|+||.+||++..
T Consensus 170 ------~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 170 ------FEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred ------CCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 12678999999999999999999999999999989999999999999965
No 124
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.31 E-value=2.6e-11 Score=99.70 Aligned_cols=117 Identities=26% Similarity=0.379 Sum_probs=90.5
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccH-HHHHHHHHHHhhhcCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITA-KNFLTAVRKYMEEHHHE 348 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 348 (426)
+.++++++++.++++.|.+.+++++||+|+++ +++|+++..|+.+...... .... .... .....++.+++
T Consensus 3 ~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~-~~~G~v~~~~l~~~~~~~~-~~~~-~~~~~~~~~~~v~~~~------ 73 (121)
T cd04584 3 VVTITPTTTIAEALELMREHKIRHLPVVDEEG-RLVGIVTDRDLRDASPSPF-TTLS-EHELYLLLKMPVKEIM------ 73 (121)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCcccEECCCC-cEEEEEEHHHHHHHhhhhc-ccch-hhhhhhhcCcCHHHHh------
Confidence 78899999999999999999999999999987 9999999999987642110 0000 0000 00011233333
Q ss_pred CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
..++.++.+++++.++++.|.+++.+.+||+|+ |+++|+||..||++
T Consensus 74 ----~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 74 ----TKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred ----hCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 347899999999999999999999999999986 99999999999986
No 125
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=2.5e-11 Score=97.83 Aligned_cols=105 Identities=22% Similarity=0.248 Sum_probs=91.1
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
++.++.+++++.+++..|.+++.+.+||+| ++++++|+++..|+..... ..++.+ +|... +.
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d-~~~~~~G~v~~~~l~~~~~------------~~~v~~----~~~~~-~~ 64 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVD-EKNKVVGIVTSKDVAGKDP------------DTTIEK----VMTKN-PI 64 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEEC-CCCeEEEEecHHHHhcccc------------cccHHH----HhcCC-Ce
Confidence 677889999999999999998989999999 4899999999999864311 235666 66654 88
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
++.+++++.++++.|.+++.+.+||+|++| +++|+++..|+++
T Consensus 65 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~G~it~~di~~ 107 (108)
T cd04596 65 TVNPKTSVASVAHMMIWEGIEMLPVVDDNK-KLLGIISRQDVLK 107 (108)
T ss_pred EECCCCCHHHHHHHHHHcCCCeeeEEcCCC-CEEEEEEHHHhhc
Confidence 999999999999999999999999999888 9999999999975
No 126
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.31 E-value=2.1e-11 Score=123.75 Aligned_cols=115 Identities=19% Similarity=0.221 Sum_probs=96.5
Q ss_pred cccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC---CCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHH
Q 014353 265 MSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG---GNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKY 341 (426)
Q Consensus 265 m~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~---~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 341 (426)
|..+ ++++.+++++.++++.|.+++++.+||+|++ + +++|+||.+|+..... ...++.++
T Consensus 106 mi~d-pvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G-klvGIVT~~DL~~v~~---------------~~~~V~eI 168 (505)
T PLN02274 106 FVSD-PVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS-KLLGYVTKRDWDFVND---------------RETKLSEV 168 (505)
T ss_pred ccCC-CeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC-eEEEEEEHHHHhhccc---------------cCCcHHHH
Confidence 4444 8999999999999999999999999999973 6 9999999999965421 11235555
Q ss_pred hhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353 342 MEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH 404 (426)
Q Consensus 342 ~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~ 404 (426)
|.. ..++.++.+++++.++++.|.++++..+||+|++++++|+||++||++.+..
T Consensus 169 Mt~--------~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 169 MTS--------DDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred hcc--------CCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 543 1137899999999999999999999999999999999999999999999864
No 127
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=2.5e-11 Score=99.93 Aligned_cols=121 Identities=16% Similarity=0.265 Sum_probs=94.8
Q ss_pred CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhh
Q 014353 64 SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVN 143 (426)
Q Consensus 64 ~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (426)
++++++++++++.+|++.|.++++..+||+|.+ ++++|+++..|++...........
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~~l~~~~~~~~~~~~--------------- 57 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA--------GELIGIITRRDIIRAGSVRTSVED--------------- 57 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCC--------CcEEEEEEcHHHHhhccccccccc---------------
Confidence 367899999999999999999999999999987 899999999999754211100000
Q ss_pred cCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCC
Q 014353 144 GMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLG 223 (426)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~ 223 (426)
+ . ........++.++|.. ++..+.+++++.+++..|.+++.+.+||++ +
T Consensus 58 ~---------------------~-----~~~~~~~~~~~~~~~~----~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~ 106 (122)
T cd04635 58 Q---------------------Q-----RTQTKASPTVEKIMST----PVYSVTPDDSIATAVELMLEHDIGRLPVVN-E 106 (122)
T ss_pred h---------------------h-----hhhhhccCcHHHHhcC----CCeeECCCCCHHHHHHHHHHcCCCeeeEEc-C
Confidence 0 0 0000123457778765 788999999999999999999999999999 4
Q ss_pred CCeEEEEEeHHHHHH
Q 014353 224 EGTIDNIITQSSVIH 238 (426)
Q Consensus 224 ~~~l~Giis~~Dl~~ 238 (426)
+|+++|++|..|+++
T Consensus 107 ~g~~~Gvit~~dl~~ 121 (122)
T cd04635 107 KDQLVGIVDRHDVLK 121 (122)
T ss_pred CCcEEEEEEhHHhhc
Confidence 789999999999875
No 128
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.30 E-value=5.9e-11 Score=118.28 Aligned_cols=182 Identities=15% Similarity=0.187 Sum_probs=132.6
Q ss_pred ccccchhhhcCCC----CChhH--HHhhhhc--cCCccCCCCCC--CceEEEeCCCCHHHHHHHHHHCCcccceeeecCC
Q 014353 28 MKVEDLWDVLEPQ----LSPTE--KLNACFE--SIPVEAFPPPP--SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDA 97 (426)
Q Consensus 28 ~~~~~~~~~l~~~----~~~~~--~~~~~~~--~~~~~~~~~~~--~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~ 97 (426)
+|.+++...++.. +..+| -+++.++ .+++.++ |+ .++++++.++++.++++.|.++++..+||++++.
T Consensus 157 ~t~eEl~~lv~~~~~~g~~~~E~~~i~~vl~l~~~~v~di--Mtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~ 234 (408)
T TIGR03520 157 ISVDQLSQALELTDEEDTTKEEQKILQGIVSFGNTDTKQV--MRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETI 234 (408)
T ss_pred CCHHHHHHHHHhHhhcCCChHHHHHHHHHhccCCCEeeee--CCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCC
Confidence 5677777765321 44433 2666665 7888888 75 4899999999999999999999999999999764
Q ss_pred CCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhccccccccc
Q 014353 98 PEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYK 177 (426)
Q Consensus 98 ~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 177 (426)
++++|+|+..|++.++.. .
T Consensus 235 -------d~ivGiv~~kDll~~~~~------------------------------------------------------~ 253 (408)
T TIGR03520 235 -------DNITGVLYIKDLLPHLNK------------------------------------------------------K 253 (408)
T ss_pred -------CceEEEEEHHHHHhHhcc------------------------------------------------------C
Confidence 799999999999753210 0
Q ss_pred ccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccc
Q 014353 178 NTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKL 257 (426)
Q Consensus 178 ~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v 257 (426)
...+.+++. ++.++++++++.++++.|.+++.|..+|+| +.|.++|+||..|++..+......+ ... ....+
T Consensus 254 ~~~l~~~~~-----~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD-E~G~~~GiVT~eDileeivgei~de-~d~-~~~~i 325 (408)
T TIGR03520 254 NFDWQSLLR-----EPYFVPENKKLDDLLRDFQEKKNHLAIVVD-EYGGTSGLVTLEDIIEEIVGDISDE-FDD-EDLIY 325 (408)
T ss_pred CCCHHHHcC-----CCeEeCCCCcHHHHHHHHHhcCceEEEEEc-CCCCEEEEEEHHHHHHHHhCCCCCc-CCc-Cccce
Confidence 113556665 678999999999999999999999999999 4789999999999999985321111 000 00111
Q ss_pred cccccCCcccCCeeEeCCCCcHHHHHHHH
Q 014353 258 SEIGLPIMSANHIVKVYEDEPVLQAFKLM 286 (426)
Q Consensus 258 ~~~~~~im~~~~~~~v~~~~~v~~a~~~m 286 (426)
.. . .+..+.++...++.++.+.|
T Consensus 326 ~~-----~-~~~~~~v~G~~~l~~l~~~l 348 (408)
T TIGR03520 326 SK-----I-DDNNYVFEGKTSLKDFYKIL 348 (408)
T ss_pred EE-----e-CCCeEEEEeccCHHHHHHHh
Confidence 11 0 12356777778888877766
No 129
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.30 E-value=6.3e-11 Score=95.36 Aligned_cols=106 Identities=23% Similarity=0.337 Sum_probs=91.1
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
.+..+.++.++.+++..|.+++..++||+|. +++++|+++..|+...... ..++.+ +|... +.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~-----------~~~v~~----~~~~~-~~ 65 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK-DNKLLGIVSLESLEQAYKE-----------AKSLED----IMLED-VF 65 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcC-CCcEEEEEEHHHHHHHhhc-----------CCcHhH----hhcCC-ce
Confidence 5667899999999999999899999999994 7899999999999875431 134555 66654 89
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
++.+++++.++++.|.+.+.+.+||+|++| +++|++|.+|+++
T Consensus 66 ~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g-~~~Gvit~~~l~~ 108 (109)
T cd04583 66 TVQPDASLRDVLGLVLKRGPKYVPVVDEDG-KLVGLITRSSLVD 108 (109)
T ss_pred EECCCCcHHHHHHHHHHcCCceeeEECCCC-eEEEEEehHHhhc
Confidence 999999999999999999999999999888 9999999999864
No 130
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.29 E-value=4.9e-11 Score=97.22 Aligned_cols=110 Identities=21% Similarity=0.405 Sum_probs=88.4
Q ss_pred CcEEecCCCCHHHHHHHHhhcC-CcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCe
Q 014353 192 PFLALQKSNSFLTMLLLLSKYK-MKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHI 270 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~-~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~ 270 (426)
++..+.++.++.++++.|.+++ ...++|++ +++++|+++..|++..+...... ...++.+ +|... +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~v~~~dl~~~~~~~~~~------~~~~i~~----~~~~~-~ 68 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE--KGRLLGIFTERDIVRLTAIGKDL------SDLPIGE----VMTQP-V 68 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC--CCcEEEEEeHHHHHHHHhcCCCc------cccCHHH----hcCCC-c
Confidence 4567889999999999998878 56677777 58999999999998866432111 1235566 66654 7
Q ss_pred eEeCCC--CcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 271 VKVYED--EPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 271 ~~v~~~--~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
.++.++ +++.++++.|.+++...+||+|++| +++|+||.+|+++
T Consensus 69 ~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~-~~~Gvit~~dl~~ 114 (115)
T cd04620 69 VTLQESEIQDIFTALSLFRQHQIRHLPVLDDQG-QLIGLVTAESIRQ 114 (115)
T ss_pred EEEecccccCHHHHHHHHHHhCCceEEEEcCCC-CEEEEEEhHHhhc
Confidence 888877 7899999999999999999999888 9999999999976
No 131
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=6.4e-11 Score=95.86 Aligned_cols=109 Identities=27% Similarity=0.406 Sum_probs=91.3
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
++..+.++.++.+++..|.+++.+.+||+| ++++++|+++..|++.+...... ...++.+ +|... +.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d-~~~~~~G~v~~~dl~~~~~~~~~-------~~~~v~~----~~~~~-~~ 68 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKD-NEEKLKGVVTFTDILDLDLFESF-------LEKKVFN----IVSQD-VF 68 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEc-CCCCEEEEEehHHhHHHHhhccc-------ccCcHHH----HhcCC-cE
Confidence 566789999999999999999999999999 47899999999999876532211 1235566 56654 88
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
++.+++++.++++.|.+++...+||+|+ | +++|+||..|++.
T Consensus 69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~G~it~~di~~ 110 (111)
T cd04626 69 YVNEEDTIDEALDIMREKQIGRLPVVDD-N-KLIGVVRTKDILD 110 (111)
T ss_pred EEcCCCcHHHHHHHHHHcCCCeeeEeEC-C-EEEEEEEhHHhcc
Confidence 9999999999999999999999999998 7 9999999999863
No 132
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.29 E-value=1.2e-10 Score=117.25 Aligned_cols=122 Identities=18% Similarity=0.210 Sum_probs=103.0
Q ss_pred cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcc
Q 014353 175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK 254 (426)
Q Consensus 175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~ 254 (426)
.....++.++|.. +++++.+++++.+++..|.+++++.+||+| +++++|++|..|+... . ..
T Consensus 84 ~v~~VKv~eim~~----~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD--~gklvGIVT~rDL~~~-~-----------~~ 145 (475)
T TIGR01303 84 TVAFVKSRDLVLD----TPITLAPHDTVSDAMALIHKRAHGAAVVIL--EDRPVGLVTDSDLLGV-D-----------RF 145 (475)
T ss_pred HHhhcchhhcccc----CCeEECCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEEEHHHhhcC-C-----------CC
Confidence 3445567777776 788999999999999999999999999988 4799999999997321 0 02
Q ss_pred ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCC
Q 014353 255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAP 320 (426)
Q Consensus 255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~ 320 (426)
.++.+ +|+.+ ++++.+++++.+++++|.+++++.+||+|+++ +++|+||.+||++....+
T Consensus 146 ~~V~d----IMt~~-litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g-~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 146 TQVRD----IMSTD-LVTAPADTEPRKAFDLLEHAPRDVAPLVDADG-TLAGILTRTGALRATIYT 205 (475)
T ss_pred CCHHH----HccCC-ceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHHHHhCC
Confidence 45777 78864 99999999999999999999999999999888 999999999999986544
No 133
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.29 E-value=8.5e-11 Score=111.82 Aligned_cols=147 Identities=14% Similarity=0.269 Sum_probs=115.6
Q ss_pred cccchhhhcCC-----CCChhHH--Hhhhh--ccCCccCCCCCCC--ceEEEeCCCCHHHHHHHHHHCCcccceeeecCC
Q 014353 29 KVEDLWDVLEP-----QLSPTEK--LNACF--ESIPVEAFPPPPS--QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDA 97 (426)
Q Consensus 29 ~~~~~~~~l~~-----~~~~~~~--~~~~~--~~~~~~~~~~~~~--~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~ 97 (426)
|.++|...++. .++.++. +++.+ +..++.++ |+. +++++++++++.++++.+.+++...+||++.+.
T Consensus 33 t~eEl~~l~~~~~~~g~l~~~e~~~i~~vl~l~~~~V~di--Mtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~ 110 (292)
T PRK15094 33 NRDELLALIRDSEQNDLIDEDTRDMLEGVMDIADQRVRDI--MIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDK 110 (292)
T ss_pred CHHHHHHHHHhHhhcCCCCHHHHHHHHHHhccCCCEEeEE--ccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCC
Confidence 45666666532 2665442 66664 46788887 755 799999999999999999999999999998753
Q ss_pred CCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhccccccccc
Q 014353 98 PEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYK 177 (426)
Q Consensus 98 ~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 177 (426)
++++|+|+..|++.++.... .
T Consensus 111 -------d~iiGiv~~kDll~~~~~~~----------------------------------------------------~ 131 (292)
T PRK15094 111 -------DHIEGILMAKDLLPFMRSDA----------------------------------------------------E 131 (292)
T ss_pred -------CcEEEEEEHHHHHhHhhccC----------------------------------------------------C
Confidence 79999999999985431100 0
Q ss_pred ccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353 178 NTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAE 242 (426)
Q Consensus 178 ~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~ 242 (426)
...+.++|. ++.++.++.++.+++..|.+++.+.+||+|+ .|.++|+||..|++..+..
T Consensus 132 ~~~l~~l~r-----~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe-~G~viGiVTleDIle~ivG 190 (292)
T PRK15094 132 AFSMDKVLR-----QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVG 190 (292)
T ss_pred cCCHHHHcC-----CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-CCCEEEEeEHHHHHHHHhC
Confidence 123667776 4558999999999999999999999999994 7889999999999999864
No 134
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.29 E-value=8.4e-11 Score=95.08 Aligned_cols=109 Identities=26% Similarity=0.364 Sum_probs=91.0
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
++.++.++.++.++.+.|.+++.+.+||+| + ++++|+++..|++..+...... ...++.+ +|..+ ++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~-~-~~~~G~v~~~~l~~~~~~~~~~------~~~~i~~----~~~~~-~~ 68 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVD-D-GRLVGIVTDRDLRNRVVAEGLD------PDTPVSE----VMTAP-PI 68 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEE-C-CEEEEEEEhHHHHHHHhccCCC------ccCCHHH----HhCCC-Ce
Confidence 566789999999999999988999999999 3 9999999999998765432110 1234566 56554 89
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
++.+++++.++++.|.+++.+.+||+++ | +++|+++.+|+++
T Consensus 69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Giit~~di~~ 110 (111)
T cd04800 69 TIPPDATVFEALLLMLERGIHHLPVVDD-G-RLVGVISATDLLR 110 (111)
T ss_pred EECCCCcHHHHHHHHHHcCCCeeeEeEC-C-EEEEEEEHHHhhc
Confidence 9999999999999999999999999998 7 9999999999975
No 135
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=7.5e-11 Score=95.55 Aligned_cols=110 Identities=21% Similarity=0.327 Sum_probs=89.8
Q ss_pred ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353 65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG 144 (426)
Q Consensus 65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g 144 (426)
.+.++++++++.+|++.|.+++...+||.+ + ++++|+++..|+.+++.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~--------~~~~G~v~~~dl~~~~~~~~~------------------- 53 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-R--------GELVGLLTFREVLQAMAQHGA------------------- 53 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-C--------CEEEEEEEHHHHHHHHHhcCC-------------------
Confidence 567899999999999999988877766654 4 799999999999876542100
Q ss_pred CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353 145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE 224 (426)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~ 224 (426)
.....++.++|.. ++.++.+++++.+++..|.+++...+||++ +
T Consensus 54 ------------------------------~~~~~~v~~~~~~----~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~ 97 (112)
T cd04625 54 ------------------------------GVLDTTVRAIMNP----EPIVASPDDSIDEVRRLMVERHLRYLPVLD--G 97 (112)
T ss_pred ------------------------------chhcCCHHHHhCC----CCeEECCCCCHHHHHHHHHHcCCCeeeEEE--C
Confidence 0112357788875 678899999999999999999999999998 5
Q ss_pred CeEEEEEeHHHHHH
Q 014353 225 GTIDNIITQSSVIH 238 (426)
Q Consensus 225 ~~l~Giis~~Dl~~ 238 (426)
++++|++|..|+++
T Consensus 98 ~~~~Gvvt~~dl~~ 111 (112)
T cd04625 98 GTLLGVISFHDVAK 111 (112)
T ss_pred CEEEEEEEHHHhhc
Confidence 89999999999875
No 136
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.28 E-value=7.4e-11 Score=95.69 Aligned_cols=111 Identities=22% Similarity=0.335 Sum_probs=91.4
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
++.++.+++++.+++..|.+++.+.+||++ + ++++|+++..|++..+....... ...++.+ +|... +.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~G~v~~~dl~~~~~~~~~~~-----~~~~v~~----i~~~~-~~ 69 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD-G-NKLVGIFTSKDIALRVVAQGLDP-----ESTLVER----VMTPN-PV 69 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE-C-CEEEEEEEhHHHHHHHHhcCCCc-----CcCCHHH----hcCCC-Ce
Confidence 567789999999999999988999999999 4 99999999999986554221100 0135666 67654 88
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
++.+++++.++++.|.+++...+||+++++ +++|+||..|++.
T Consensus 70 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~-~~~Gvvs~~dl~~ 112 (113)
T cd04587 70 CATSDTPVLEALHLMVQGKFRHLPVVDKSG-QVVGLLDVTKLTH 112 (113)
T ss_pred EEcCCCCHHHHHHHHHHcCCCcccEECCCC-CEEEEEEHHHhcc
Confidence 999999999999999999999999999877 9999999999864
No 137
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.28 E-value=7.7e-11 Score=96.74 Aligned_cols=116 Identities=28% Similarity=0.385 Sum_probs=92.9
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhh----hhccccccccccCCccc
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFE----SWGKKKLSEIGLPIMSA 267 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~----~~~~~~v~~~~~~im~~ 267 (426)
++.++.++.++.++++.|.+.+...+||+| + ++++|+++..|+.............. .....++.+ +|.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 75 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVD-R-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD----IMTR 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEec-C-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH----hccC
Confidence 566789999999999999999999999999 3 89999999999988764321100000 011234555 6766
Q ss_pred CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 268 NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 268 ~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
+ +.++.+++++.++++.|.+.+.+.+||+|++| +++|+||..|+++
T Consensus 76 ~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvvt~~di~~ 121 (122)
T cd04585 76 D-PITVSPDASVEEAAELMLERKISGLPVVDDQG-RLVGIITESDLFR 121 (122)
T ss_pred C-CeEeCCCCcHHHHHHHHHHcCCCceeEECCCC-cEEEEEEHHHhhh
Confidence 4 89999999999999999999999999999877 9999999999975
No 138
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.28 E-value=1.1e-10 Score=94.25 Aligned_cols=108 Identities=27% Similarity=0.499 Sum_probs=91.6
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
++.++.+++++.++++.|.+++++++||++ + +++.|+++..|+++....... ..++.+ +|.. ++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~~l~~~~~~~~~--------~~~v~~----~~~~-~~~ 66 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVD-D-GKLVGIVTLSDIAHAIARGLE--------LAKVKD----VMTK-DVI 66 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEee-C-CEEEEEEEHHHHHHHHhcccc--------ccCHHH----HhcC-Cce
Confidence 567788999999999999999999999999 4 899999999999887643211 134555 5554 489
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
++.+++++.++++.|.+.+.+.+||+|++| +++|+|+..|+++
T Consensus 67 ~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~i~~~dl~~ 109 (110)
T cd04588 67 TIDEDEQLYDAIRLMNKHNVGRLIVTDDEG-RPVGIITRTDILR 109 (110)
T ss_pred EECCCCCHHHHHHHHHhcCCCEEEEECCCC-CEEEEEEhHHhhc
Confidence 999999999999999999999999999877 9999999999864
No 139
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.28 E-value=1.1e-10 Score=94.20 Aligned_cols=109 Identities=26% Similarity=0.368 Sum_probs=92.5
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
++..+.++.++.++++.|.+++.+.+||++ + ++++|+++..|+.+....... ...++.+ +|... ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~G~v~~~~l~~~~~~~~~-------~~~~v~~----~~~~~-~~ 67 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVD-D-GRPLGIVTERDILRLLASGPD-------LQTPVGE----VMSSP-LL 67 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEee-C-CEEEEEEeHHHHHHHHhcCCC-------CCcCHHH----hcCCC-ce
Confidence 566789999999999999988999999998 3 899999999999887753221 1345666 66654 89
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
++.+++++.++++.|.+.+.+.+||+|++| +++|+|+.+|+++
T Consensus 68 ~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~-~~~Gvi~~~di~~ 110 (111)
T cd04611 68 TVPADTSLYDARQLMREHGIRHLVVVDDDG-ELLGLLSQTDLLQ 110 (111)
T ss_pred EECCCCCHHHHHHHHHHcCCeEEEEECCCC-cEEEEEEhHHhhc
Confidence 999999999999999999999999999888 9999999999975
No 140
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.27 E-value=1.1e-10 Score=94.60 Aligned_cols=111 Identities=23% Similarity=0.391 Sum_probs=92.2
Q ss_pred CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhh
Q 014353 64 SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVN 143 (426)
Q Consensus 64 ~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (426)
++++++++++++.+|++.|.+++.+.+||+|+ ++++|+++..|++.++.....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---------~~~~G~v~~~dl~~~~~~~~~------------------ 53 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDN---------EKPVGIITERDLVKKVVSRNL------------------ 53 (112)
T ss_pred CCcEEECCCCCHHHHHHHHHHCCCCEEEEEEC---------CEEEEEEEHHHHHHHHhhccC------------------
Confidence 46788999999999999999999999999996 689999999999876543210
Q ss_pred cCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCC
Q 014353 144 GMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLG 223 (426)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~ 223 (426)
.....++.++|.. ++..+.+++++.++++.|.+++.+.+||++.
T Consensus 54 -------------------------------~~~~~~~~~~~~~----~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~- 97 (112)
T cd04802 54 -------------------------------KPREVPVGEVMST----PLITIDPNASLNEAAKLMAKHGIKRLPVVDD- 97 (112)
T ss_pred -------------------------------CcccCCHHHhcCC----CcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-
Confidence 0112356677765 7888999999999999999999999999993
Q ss_pred CCeEEEEEeHHHHHH
Q 014353 224 EGTIDNIITQSSVIH 238 (426)
Q Consensus 224 ~~~l~Giis~~Dl~~ 238 (426)
+ +++|+++..|+++
T Consensus 98 ~-~~~Gvi~~~di~~ 111 (112)
T cd04802 98 D-ELVGIVTTTDIVM 111 (112)
T ss_pred C-EEEEEEEhhhhhc
Confidence 4 9999999999864
No 141
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=6.7e-11 Score=96.95 Aligned_cols=111 Identities=19% Similarity=0.304 Sum_probs=87.8
Q ss_pred eeEeCCCCcHHHHHHHHHhcC-CCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHH-HHHHHHHhhhcCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKK-IGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNF-LTAVRKYMEEHHH 347 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~-~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~ 347 (426)
+.++.+++++.++++.|...+ ++.+||+|+ | +++|+++..|+..++..... . ..+ ..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~-~~~G~v~~~~l~~~~~~~~~-~-------~~~~~~~v~-------- 64 (119)
T cd04598 3 APTVSPDTTVNDVLERFERDPDLSALAVVDD-G-RPVGLIMREALMELLSTPYG-R-------ALYGKKPVS-------- 64 (119)
T ss_pred cCccCCCCcHHHHHHHHHhCCCccEEEEEEC-C-eeEEEEEHHHHHHHHhchhh-H-------HHHcCCcHH--------
Confidence 678899999999999998877 889999999 7 99999999999876542100 0 000 11233
Q ss_pred CCCCCcCCceeecCCCCHHHHHHHHHhCCCc---EEEEEcCCCcEEEEEeHHHHHH
Q 014353 348 EDSPLLSGMVTCSRNHTIKELIHLLDSKKIH---RIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 348 ~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~---~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
++|..++.++.+++++.++++.|.+++.+ ..+|++++|+++|+||..|+++
T Consensus 65 --~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 65 --EVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred --HhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 34455889999999999999999999864 4468888899999999999975
No 142
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.26 E-value=1.5e-10 Score=93.69 Aligned_cols=110 Identities=23% Similarity=0.285 Sum_probs=91.0
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
.++.+.++.++.+++..|.+++...++|+| + +++.|+++..|+...+..... ....++.+ +|.++ +.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~G~v~~~~l~~~~~~~~~------~~~~~i~~----~~~~~-~~ 68 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRD-G-DPRLGIVTRTDLLDAVLLDGL------PSSTPVGE----IATFP-LI 68 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEec-C-CeEEEEEEHHHHHHHHHcCCC------CCCCCHHH----HhCCC-cE
Confidence 456788999999999999988999999999 3 789999999999887643211 01345666 67654 89
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFL 316 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~ 316 (426)
.+.+++++.++++.|.+++...+||+|+ + +++|+|+..|++++
T Consensus 69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~G~it~~dl~~~ 111 (111)
T cd04589 69 TVDPDDFLFNALLLMTRHRIHRVVVREG-G-EVVGVLEQTDLLSF 111 (111)
T ss_pred EECCCCcHHHHHHHHHHhCccEEEEeeC-C-EEEEEEEhHHhhcC
Confidence 9999999999999999999999999986 6 99999999999753
No 143
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.26 E-value=1.2e-10 Score=94.14 Aligned_cols=108 Identities=22% Similarity=0.317 Sum_probs=90.7
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC-CeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCe
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE-GTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHI 270 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~-~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~ 270 (426)
.++++.++.++.+++..|.+.+...+||++. + ++++|+++..|+++....... ..++.+ +|. ++
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~-~~~~~~G~v~~~~l~~~~~~~~~--------~~~~~~----~~~--~~ 66 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDG-DLDNIIGVVHVKDLLRALAEGEE--------DLDLRD----LLR--PP 66 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECC-CCceEEEEEEHHHHHHHHHcCCC--------cCCHHH----Hhc--CC
Confidence 4578899999999999999889999999994 5 899999999999987753211 123444 443 37
Q ss_pred eEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 271 ~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
.++.+++++.++++.|.+++.+.+||+|++| +++|+||.+|++.
T Consensus 67 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvit~~di~~ 110 (111)
T cd04590 67 LFVPESTPLDDLLEEMRKERSHMAIVVDEYG-GTAGLVTLEDILE 110 (111)
T ss_pred eecCCCCcHHHHHHHHHhcCCcEEEEEECCC-CEEEEeEHHHhhc
Confidence 8899999999999999999999999999888 9999999999864
No 144
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=5.3e-11 Score=98.91 Aligned_cols=112 Identities=19% Similarity=0.189 Sum_probs=87.7
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHH-----HhccCcchhhhhccccccccccCCcc
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHML-----AECAGLEWFESWGKKKLSEIGLPIMS 266 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l-----~~~~~~~~~~~~~~~~v~~~~~~im~ 266 (426)
++.++.+++++.+++..|.+++.+.+||+| ++++++|+++..|+.... ..... .....++.+ +|.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d-~~~~~~Giv~~~dl~~~~~~~~~~~~~~-----~~~~~~v~~----im~ 71 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVD-SDDNFIGVITAVDLLGEEPIKRIQEGGI-----SRSELTVAD----VMT 71 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEc-CCCcEEEEEEHHHHhhChhhHHHHHcCC-----CchheEHHH----hcC
Confidence 456889999999999999989999999999 478999999999988632 21100 011244666 676
Q ss_pred cCCee--Ee----CCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHH
Q 014353 267 ANHIV--KV----YEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQF 315 (426)
Q Consensus 267 ~~~~~--~v----~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~ 315 (426)
+. .. .+ .+++++.++++.|.+++.+.+||+|++ | +++|+||.+||++
T Consensus 72 ~~-~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~-~~~G~it~~di~~ 125 (126)
T cd04640 72 PK-EDLKALDLEELENASVGDVVETLKASGRQHALVVDREHH-QIRGIISTSDIAR 125 (126)
T ss_pred ch-hhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCC-EEEEEEeHHHHhh
Confidence 53 32 23 268899999999999999999999986 6 9999999999975
No 145
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=2e-10 Score=92.73 Aligned_cols=107 Identities=30% Similarity=0.502 Sum_probs=91.3
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
++.++.++.++.++...|.+++..++||+| + ++++|+++..|+.+.+.... ...++.+ +|... +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~G~v~~~dl~~~~~~~~--------~~~~~~~----~~~~~-~~ 67 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVE-G-GRVVGIISRRDVEKALRHGL--------GHAPVKD----YMSTD-VV 67 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEee-C-CEEEEEEEHHHHHHHHhccc--------ccCcHHH----HhcCC-CE
Confidence 677889999999999999888889999999 4 89999999999987663221 1345666 67654 88
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
++.+++++.++++.|.+++.+.+||+| +| +++|+||..|+++
T Consensus 68 ~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~-~~~Gvvt~~di~~ 109 (110)
T cd04595 68 TVPPDTPLSEVQELMVEHDIGRVPVVE-DG-RLVGIVTRTDLLR 109 (110)
T ss_pred EECCCCcHHHHHHHHHHcCCCeeEEEe-CC-EEEEEEEhHHhhc
Confidence 999999999999999999999999999 67 9999999999874
No 146
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.25 E-value=4e-11 Score=113.37 Aligned_cols=109 Identities=22% Similarity=0.333 Sum_probs=90.9
Q ss_pred CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME 343 (426)
Q Consensus 264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 343 (426)
+|.++++.++.+++++.++++.|.+.+++.+||+|++| +++|+++.+|+.+....+. ....++.+++
T Consensus 160 im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g-~~~Givt~~dl~~~~~~~~-----------~~~~~v~~im- 226 (268)
T TIGR00393 160 LMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENN-QLVGVFTDGDLRRALLGGG-----------SLKSEVRDFM- 226 (268)
T ss_pred HhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCC-CEEEEEEcHHHHHHHhcCC-----------cccCcHHHhC-
Confidence 77653388999999999999999999999999999888 9999999999988653211 0112344444
Q ss_pred hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEe
Q 014353 344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVIT 394 (426)
Q Consensus 344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT 394 (426)
.+++.++.+++++.++++.|.+++.+++||+|++|+++|+|+
T Consensus 227 ---------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 227 ---------TLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ---------CCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 347889999999999999999999999999998899999985
No 147
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=1.5e-10 Score=95.36 Aligned_cols=116 Identities=20% Similarity=0.336 Sum_probs=92.9
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhh----hhccccccccccCCccc
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFE----SWGKKKLSEIGLPIMSA 267 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~----~~~~~~v~~~~~~im~~ 267 (426)
+++++.++.++.+++..|.+++++++||+| + ++++|+++..++.+.+.......... .....++.+ +|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 75 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVE-D-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ----IMTR 75 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEe-C-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH----hhcC
Confidence 567889999999999999999999999999 3 89999999999988764321100000 001234555 6665
Q ss_pred CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 268 NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 268 ~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
+ ++++.+++++.++++.|.+++...+||+|+++ +++|+++..|++.
T Consensus 76 ~-~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~-~~~Gvit~~dll~ 121 (122)
T cd04637 76 D-PITVSPDTPVDEASKLLLENSISCLPVVDENG-QLIGIITWKDLLK 121 (122)
T ss_pred C-CeeeCCCCcHHHHHHHHHHcCCCeEeEECCCC-CEEEEEEHHHhhh
Confidence 4 89999999999999999999999999999877 9999999999975
No 148
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=1.4e-10 Score=93.00 Aligned_cols=103 Identities=31% Similarity=0.444 Sum_probs=87.1
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
+.++..+.++.++++.|.+.+++.+||+|+++ +++|+++.+++.... .. .++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~g~v~~~~l~~~~--~~--------------~~~~~~~~------ 59 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEYKVSGVPVVKKSG-ELVGIITRKDLLRNP--EE--------------EQLALLMT------ 59 (106)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCeEEEEcCCC-cEEEEEEHHHHHhcc--cc--------------chHHHHhc------
Confidence 78889999999999999998999999999877 999999999997531 10 12333333
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
.++.++..++++.++++.|.+++.+.+||+|+ |+++|+||..|+++
T Consensus 60 ----~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 60 ----RDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred ----CCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 37889999999999999999999999999994 79999999999875
No 149
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.25 E-value=1.7e-10 Score=93.57 Aligned_cols=110 Identities=24% Similarity=0.441 Sum_probs=90.3
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHH-HHHhccCcchhhhhccccccccccCCcccCCe
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIH-MLAECAGLEWFESWGKKKLSEIGLPIMSANHI 270 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~-~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~ 270 (426)
.+.++.+++++.+++..|.+++.+.+||+| + ++++|+++..|++. .+...... ...++.+ +|... +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~-~~~~G~i~~~~l~~~~~~~~~~~------~~~~~~~----~~~~~-~ 68 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCE-N-DRLVGIVTDRDIVVRAVAEGRDP------DTTTVGD----VMTRG-V 68 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEee-C-CEEEEEEEhHHHHHHHhhccCCc------ccCCHHH----hccCC-c
Confidence 456789999999999999999999999999 4 99999999999873 33222111 1123565 66654 8
Q ss_pred eEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 271 ~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
.++.+++++.++++.|.+.+.+++||+|++| +++|+|+..|+++
T Consensus 69 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~it~~di~~ 112 (113)
T cd04622 69 VTVTEDDDVDEAARLMREHQVRRLPVVDDDG-RLVGIVSLGDLAR 112 (113)
T ss_pred cEECCCCCHHHHHHHHHHcCCCeeeEECCCC-cEEEEEEHHHhhc
Confidence 8999999999999999999999999999877 9999999999975
No 150
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.24 E-value=1.9e-10 Score=94.42 Aligned_cols=119 Identities=24% Similarity=0.395 Sum_probs=94.4
Q ss_pred ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353 65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG 144 (426)
Q Consensus 65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g 144 (426)
++.++++++++.+|+..|.+++.+.+||+|++ ++++|+++..|+............ .
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~~l~~~~~~~~~~~~---------------~ 58 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE--------GRLVGIVTDRDLRDASPSPFTTLS---------------E 58 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC--------CcEEEEEEHHHHHHHhhhhcccch---------------h
Confidence 67899999999999999999999999999998 899999999999764322110000 0
Q ss_pred CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353 145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE 224 (426)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~ 224 (426)
.. .......++.++|.. +...+.+++++.+++..|.+++.+.+||++ +
T Consensus 59 -----------------------~~---~~~~~~~~v~~~~~~----~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~-~- 106 (121)
T cd04584 59 -----------------------HE---LYLLLKMPVKEIMTK----DVITVHPLDTVEEAALLMREHRIGCLPVVE-D- 106 (121)
T ss_pred -----------------------hh---hhhhcCcCHHHHhhC----CCeEECCCCcHHHHHHHHHHcCCCeEEEee-C-
Confidence 00 001223457788876 788999999999999999999999999998 3
Q ss_pred CeEEEEEeHHHHHH
Q 014353 225 GTIDNIITQSSVIH 238 (426)
Q Consensus 225 ~~l~Giis~~Dl~~ 238 (426)
++++|+++..|+++
T Consensus 107 ~~~~Gvv~~~di~~ 120 (121)
T cd04584 107 GRLVGIITETDLLR 120 (121)
T ss_pred CEEEEEEEHHHhhc
Confidence 89999999999875
No 151
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1.5e-10 Score=95.07 Aligned_cols=115 Identities=25% Similarity=0.425 Sum_probs=92.1
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcc----hhhhhccccccccccCCccc
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLE----WFESWGKKKLSEIGLPIMSA 267 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~----~~~~~~~~~v~~~~~~im~~ 267 (426)
++.++.+++++.+++..|.+++++.+||+| + ++++|+++..++...+....... ....+...++.+ +|..
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~-~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 75 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIE-G-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSD----IMTR 75 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEE-C-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHH----HccC
Confidence 567889999999999999989999999999 3 99999999999987764221100 000112234555 6665
Q ss_pred CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 268 NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 268 ~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
. +.++.+++++.++++.|.+.+.+.+||+|+ + +++|+|+.+|+++
T Consensus 76 ~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvi~~~dl~~ 120 (121)
T cd04633 76 P-VITIEPDTSVSDVASLMLENNIGGLPVVDD-G-KLVGIVTRTDILR 120 (121)
T ss_pred C-ceEECCCCcHHHHHHHHHHcCCCcccEEEC-C-EEEEEEEHHHhhc
Confidence 4 899999999999999999999999999998 7 9999999999975
No 152
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.24 E-value=6.1e-11 Score=111.46 Aligned_cols=148 Identities=20% Similarity=0.320 Sum_probs=125.3
Q ss_pred hccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccccc
Q 014353 252 WGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT 330 (426)
Q Consensus 252 ~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~ 330 (426)
+...++.+ +|.+ +.+..+..+++..++++.+....+.++|+..++-++++|++..+|+++++...+.+.
T Consensus 197 Le~~tV~D----IMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~------ 266 (423)
T COG4536 197 LENLTVSD----IMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFT------ 266 (423)
T ss_pred cccceeee----eeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCccc------
Confidence 33456777 7776 569999999999999999999999999999877678999999999999987654211
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCcc
Q 014353 331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYF 410 (426)
Q Consensus 331 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~~ 410 (426)
...+...+ ..|+++++.+++.+-+..|.+++-|-..|||+.|.+.|+||..||+..++++..+.-
T Consensus 267 ----k~d~~~~a-----------~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde~ 331 (423)
T COG4536 267 ----KEDILRAA-----------DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEH 331 (423)
T ss_pred ----HhHHHHHh-----------cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccccccC
Confidence 11122222 278999999999999999999999999999999999999999999999999999877
Q ss_pred cccccccccCCCCC
Q 014353 411 GDFFDGVLPLPENS 424 (426)
Q Consensus 411 ~~~~~~~~~~~~~~ 424 (426)
+..-++..+++|++
T Consensus 332 d~~~~ev~~q~dgs 345 (423)
T COG4536 332 DTLAKEVIPQSDGS 345 (423)
T ss_pred cccchhhcccCCCc
Confidence 77888888888875
No 153
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.24 E-value=1.7e-10 Score=93.19 Aligned_cols=109 Identities=26% Similarity=0.390 Sum_probs=91.0
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
++..+.+++++.+++..|.+.+..++||+| + ++++|+++..|+.+....... . ..++.+ .|..+ +.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~-~------~~~~~~----~~~~~-~~ 67 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVD-D-GRLVGIVTLADIRRVPAEGRE-A------TVLVGD----VMTRD-PV 67 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEee-C-CeEEEEEEHHHHHHHHhcCcc-c------ccCHHH----hccCC-Ce
Confidence 567889999999999999988899999999 4 999999999999876643211 0 123444 56654 89
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
++..++++.++++.|.+++.+.+||+|+++ +++|+||..|+++
T Consensus 68 ~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~it~~di~~ 110 (111)
T cd04612 68 TASPDETLRDALKRMAERDIGRLPVVDDSG-RLVGIVSRSDLLR 110 (111)
T ss_pred EECCCCCHHHHHHHHHhCCCCeeeEEcCCC-CEEEEEEHHHhhh
Confidence 999999999999999999999999999877 9999999999975
No 154
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.24 E-value=1.2e-10 Score=94.93 Aligned_cols=106 Identities=17% Similarity=0.295 Sum_probs=87.6
Q ss_pred ceEEEeCCCCHHHHHHHHHHCCcccceeeec---CCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHh
Q 014353 65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDV---DAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAA 141 (426)
Q Consensus 65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~---~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~ 141 (426)
+++++.+++++.+|++.|.++++..+||+|+ + ++++|+++..|+... ..
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~--------~~~~G~v~~~dl~~~--~~------------------ 54 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSG--------GKLLGIVTSRDIDFL--TD------------------ 54 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcC--------CEEEEEEEhHHhhhh--hc------------------
Confidence 5678999999999999999999999999997 5 899999999998521 00
Q ss_pred hhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecC--CCCHHHHHHHHhhcCCcEeEE
Q 014353 142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQK--SNSFLTMLLLLSKYKMKSIPV 219 (426)
Q Consensus 142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~--~~~l~~~l~~l~~~~~~~ipV 219 (426)
...++.++|.. ....+.. ++++.+++..|.+++.+.+||
T Consensus 55 -----------------------------------~~~~v~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~pV 95 (114)
T cd04602 55 -----------------------------------SETPLSEVMTP----REVLVVAPTGITLEEANEILRESKKGKLPI 95 (114)
T ss_pred -----------------------------------cCCCHHHhcCC----CceEEECCCCCCHHHHHHHHHhcCCCceeE
Confidence 01246677765 5556655 999999999999999999999
Q ss_pred EeCCCCeEEEEEeHHHHHH
Q 014353 220 VDLGEGTIDNIITQSSVIH 238 (426)
Q Consensus 220 vd~~~~~l~Giis~~Dl~~ 238 (426)
++ ++++++|++|..|+++
T Consensus 96 v~-~~~~~~Gvit~~di~~ 113 (114)
T cd04602 96 VN-DDGELVALVTRSDLKK 113 (114)
T ss_pred EC-CCCeEEEEEEHHHhhc
Confidence 98 4789999999999864
No 155
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.23 E-value=1.8e-10 Score=92.71 Aligned_cols=109 Identities=24% Similarity=0.358 Sum_probs=88.5
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
++.++.+++++.+++..|.+++.+++||++ + ++++|+++..|+.+.+...... ...++.+ +|... +.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~-~~~~G~v~~~dl~~~~~~~~~~------~~~~~~~----~~~~~-~~ 68 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVD-D-GRVVGSIDESDLLDALIEGKAK------FSLPVRE----VMGEP-LP 68 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEee-C-CeeEEEEeHHHHHHHHhccccc------cCcCHHH----HhcCC-Cc
Confidence 567889999999999999999999999999 4 8999999999999877533111 0234555 56554 88
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFL 316 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~ 316 (426)
++.+++++.+++++|.+ . ..+||+++++ +++|+|+.+|++++
T Consensus 69 ~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~-~~~Gvvt~~di~~~ 110 (110)
T cd04609 69 TVDPDAPIEELSELLDR-G-NVAVVVDEGG-KFVGIITRADLLKY 110 (110)
T ss_pred eeCCCCcHHHHHHHHHh-C-CceeEEecCC-eEEEEEeHHHhhcC
Confidence 99999999999999988 3 3478888887 99999999999753
No 156
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.23 E-value=6.4e-11 Score=120.28 Aligned_cols=115 Identities=19% Similarity=0.282 Sum_probs=95.1
Q ss_pred CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC---CCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHH
Q 014353 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG---GNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRK 340 (426)
Q Consensus 264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~---~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~ 340 (426)
.|..+ ++++++++++.+++++|.+++++.+||+|++ + +++|+|+.+|+...- .. ..++.+
T Consensus 101 g~i~d-pvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g-kLvGIVt~~DL~~~~-~~--------------~~~V~d 163 (495)
T PTZ00314 101 GFIMD-PYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG-KLLGIVTSRDIDFVK-DK--------------STPVSE 163 (495)
T ss_pred ccccC-CeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC-eEEEEEEHHHHhhcc-cC--------------CCCHHH
Confidence 44444 8999999999999999999999999999974 5 999999999997431 10 112444
Q ss_pred HhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353 341 YMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV 403 (426)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~ 403 (426)
+|.. ..+++++++++++.+++++|.+++++.+||+|++++++|+||++||++...
T Consensus 164 iMt~--------~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 164 VMTP--------REKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG 218 (495)
T ss_pred hhCC--------cCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence 4421 016899999999999999999999999999999999999999999998864
No 157
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.21 E-value=2.5e-10 Score=91.19 Aligned_cols=102 Identities=26% Similarity=0.424 Sum_probs=87.9
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
++..+.+++++.++++.|.+++.+.+||+| +++++|+++..|+..... ..++.+ +|.+. +.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~Giv~~~~l~~~~~------------~~~~~~----~~~~~-~~ 62 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE--DGKLVGIITSRDVRRAHP------------NRLVAD----AMTRE-VV 62 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEehHHhhcccc------------cCCHHH----HccCC-CE
Confidence 456789999999999999888989999998 489999999999876321 234555 66654 89
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQ 314 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~ 314 (426)
++.+++++.++++.|.+++...+||+|+ + +++|+||..|++
T Consensus 63 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~G~it~~~l~ 103 (105)
T cd04599 63 TISPEASLLEAKRLMEEKKIERLPVLRE-R-KLVGIITKGTIA 103 (105)
T ss_pred EECCCCCHHHHHHHHHHcCCCEeeEEEC-C-EEEEEEEHHHhc
Confidence 9999999999999999999999999997 7 999999999986
No 158
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.21 E-value=1.6e-10 Score=117.38 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=99.0
Q ss_pred CCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHh
Q 014353 62 PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAA 141 (426)
Q Consensus 62 ~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~ 141 (426)
|.++++++++++++.+|+++|.++++..+||+|+.... ++++|+||..|+... .
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~-----GklvGIVT~~DL~~v--~------------------- 159 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMG-----SKLLGYVTKRDWDFV--N------------------- 159 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcC-----CeEEEEEEHHHHhhc--c-------------------
Confidence 67899999999999999999999999999999973000 799999999999521 0
Q ss_pred hhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEe
Q 014353 142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVD 221 (426)
Q Consensus 142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd 221 (426)
....++.++|.+. .+++++.+++++.++++.|.+++++.+||+|
T Consensus 160 ----------------------------------~~~~~V~eIMt~~--~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD 203 (505)
T PLN02274 160 ----------------------------------DRETKLSEVMTSD--DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVN 203 (505)
T ss_pred ----------------------------------ccCCcHHHHhccC--CCcEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 1134688899750 1278999999999999999999999999999
Q ss_pred CCCCeEEEEEeHHHHHHHHH
Q 014353 222 LGEGTIDNIITQSSVIHMLA 241 (426)
Q Consensus 222 ~~~~~l~Giis~~Dl~~~l~ 241 (426)
++++++|+||..|+++.+.
T Consensus 204 -~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 204 -EDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred -CCCeEEEEEEHHHHHHHhh
Confidence 4789999999999999885
No 159
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.20 E-value=4.7e-10 Score=91.46 Aligned_cols=108 Identities=34% Similarity=0.538 Sum_probs=93.4
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
.+.++.++.++.+++..|.++++..+||++ .++++|++|..|+..++....... .++.+ +|+.. ++
T Consensus 8 ~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~--~~~l~Giit~~di~~~~~~~~~~~-------~~v~~----v~~~~-~~ 73 (117)
T COG0517 8 DVITVKPDTSVRDALLLMSENGVSAVPVVD--DGKLVGIITERDILRALAAGGKRL-------LPVKE----VMTKP-VV 73 (117)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHhccCCcc-------ccHHH----hccCC-cE
Confidence 778999999999999999999999999998 458999999999999986543211 14555 77754 89
Q ss_pred EeCCCCcHHHHHHHHHh-cCCCeeEEEeCC-CCeEEEEEeHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRR-KKIGGIPVVEKG-GNKAVGNISLRDIQ 314 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~-~~~~~lpVvd~~-~~~lvGiIs~~Dl~ 314 (426)
++.+++++.++++.|.+ ++++.+||+|++ + +++|++|.+|++
T Consensus 74 ~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~-~lvGivt~~di~ 117 (117)
T COG0517 74 TVDPDTPLEEALELMVERHKIRRLPVVDDDGG-KLVGIITLSDIL 117 (117)
T ss_pred EECCCCCHHHHHHHHHHHcCcCeEEEEECCCC-eEEEEEEHHHcC
Confidence 99999999999999999 799999999987 4 899999999973
No 160
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.20 E-value=2.1e-10 Score=92.38 Aligned_cols=107 Identities=29% Similarity=0.440 Sum_probs=88.6
Q ss_pred CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhh
Q 014353 64 SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVN 143 (426)
Q Consensus 64 ~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (426)
++++++++++++.+|++.|.+++...+||+|++ |+++|+++..++... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~~l~~~----~~------------------ 51 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDD--------GKLVGIVTNRDLRFE----TD------------------ 51 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC--------CEEEEEEEhhHeeec----cc------------------
Confidence 467899999999999999999999999999988 899999999998521 00
Q ss_pred cCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecC-CCCHHHHHHHHhhcCCcEeEEEeC
Q 014353 144 GMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQK-SNSFLTMLLLLSKYKMKSIPVVDL 222 (426)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~-~~~l~~~l~~l~~~~~~~ipVvd~ 222 (426)
...++.++|.. .+..+.+ ++++.+++..|.+++.+.+||++
T Consensus 52 ---------------------------------~~~~v~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~- 93 (110)
T cd04601 52 ---------------------------------LDKPVSEVMTP----ENLLTTVEGTSLEEALELLHEHKIEKLPVVD- 93 (110)
T ss_pred ---------------------------------CCCCHHHhccc----CceEEecCCCCHHHHHHHHHHhCCCeeeEEc-
Confidence 12246677754 4555566 99999999999999999999999
Q ss_pred CCCeEEEEEeHHHHHH
Q 014353 223 GEGTIDNIITQSSVIH 238 (426)
Q Consensus 223 ~~~~l~Giis~~Dl~~ 238 (426)
++++++|+++..|+++
T Consensus 94 ~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 94 DEGKLKGLITVKDIEK 109 (110)
T ss_pred CCCCEEEEEEhhhhhc
Confidence 4789999999999864
No 161
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.19 E-value=3.9e-10 Score=90.24 Aligned_cols=100 Identities=18% Similarity=0.230 Sum_probs=85.8
Q ss_pred EEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEe
Q 014353 194 LALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKV 273 (426)
Q Consensus 194 ~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v 273 (426)
+++.++.++.+++..|.+.+...+||+| + ++++|+++..|+..... .++.+ +|... +.++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~G~v~~~~l~~~~~-------------~~~~~----~~~~~-~~~v 63 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVD-Y-NKFLGAVYLKDIENATY-------------GDVVD----YIVRG-IPYV 63 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEE-C-CEEEEEEEHHHHhhhcc-------------cchhh----hhhcC-CcEE
Confidence 4678999999999999999999999999 4 99999999999875321 23444 56654 8899
Q ss_pred CCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 274 YEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 274 ~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
.+++++.++++.|.+++...+||+|+ | +++|+||.+|++.
T Consensus 64 ~~~~~l~~a~~~~~~~~~~~~~Vv~~-~-~~iGvit~~dl~~ 103 (104)
T cd04594 64 RLTSTAEEAWEVMMKNKTRWCPVVDD-G-KFKGIVTLDSILD 103 (104)
T ss_pred cCCCCHHHHHHHHHHcCcceEEEEEC-C-EEEEEEEHHHhhc
Confidence 99999999999999999999999984 6 9999999999874
No 162
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.19 E-value=1.6e-10 Score=117.66 Aligned_cols=122 Identities=25% Similarity=0.339 Sum_probs=96.2
Q ss_pred hccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccH
Q 014353 252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITA 331 (426)
Q Consensus 252 ~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~ 331 (426)
+...++.+ +|.++ +.++.+++++.++++.|.+++++.+||+|+++ +++|+|+.+|+.+.+......
T Consensus 332 l~~~~v~~----im~~~-~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~~~-------- 397 (454)
T TIGR01137 332 LKNATVKD----LHLPA-PVTVHPTETVGDAIEILREYGFDQLPVVTEAG-KVLGSVTLRELLSALFAGKAN-------- 397 (454)
T ss_pred hccCCHHH----hCcCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHHHHhccCCC--------
Confidence 44455666 78765 99999999999999999999999999999887 999999999999865432110
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 014353 332 KNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRL 402 (426)
Q Consensus 332 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l 402 (426)
...++.++| ..++.++++++++.+++++|.+++ .+||+++|+++|+||++||++++
T Consensus 398 --~~~~v~~im----------~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 398 --PDDAVSKVM----------SKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred --cCCCHHHhc----------CCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 011344444 337889999999999999998864 35555579999999999999875
No 163
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.19 E-value=1.4e-10 Score=102.18 Aligned_cols=166 Identities=13% Similarity=0.300 Sum_probs=128.3
Q ss_pred CCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCccc-CCeeEeCCCCc
Q 014353 200 NSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA-NHIVKVYEDEP 278 (426)
Q Consensus 200 ~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~-~~~~~v~~~~~ 278 (426)
.+..+++.++.+...+- ++|.++ .+.+..... +....+++ +|-+ ++++++..+.+
T Consensus 32 knr~eLl~liRdse~n~--LiD~dt---------~~mlEGvm~---------iadl~vrD----iMIPRSQM~~l~~~~~ 87 (293)
T COG4535 32 KNREELLELIRDSEQNE--LIDADT---------LDMLEGVMD---------IADLRVRD----IMIPRSQMITLKRNQT 87 (293)
T ss_pred cCHHHHHHHHHHhhhcc--ccChhH---------HHHHHHHHH---------HHHhhHhh----hcccHHHheeccccCC
Confidence 36788888887655443 344211 122222211 12345666 6766 56899999999
Q ss_pred HHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCcCCcee
Q 014353 279 VLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVT 358 (426)
Q Consensus 279 v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 358 (426)
+.+++..+.+..++++||+.++.+.+.|++-.+||++++..+.... .+.+++ ++.+.
T Consensus 88 l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F------------~i~~lL-----------RPav~ 144 (293)
T COG4535 88 LDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPF------------DIKELL-----------RPAVV 144 (293)
T ss_pred HHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccc------------cHHHhc-----------cccee
Confidence 9999999999999999999987779999999999999876553211 122222 27899
Q ss_pred ecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCcccc
Q 014353 359 CSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGD 412 (426)
Q Consensus 359 v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~~~~ 412 (426)
|+++-.+.-.++-|..++.|...|||+.|.+.|.||..|||..+++.+...++.
T Consensus 145 VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~De 198 (293)
T COG4535 145 VPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYDE 198 (293)
T ss_pred cccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccccccch
Confidence 999999999999999999999999999999999999999999999999987754
No 164
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.18 E-value=1.7e-10 Score=93.10 Aligned_cols=102 Identities=22% Similarity=0.355 Sum_probs=85.1
Q ss_pred ecCCCCHHHHHHHHhhcC-----CcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCe
Q 014353 196 LQKSNSFLTMLLLLSKYK-----MKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHI 270 (426)
Q Consensus 196 v~~~~~l~~~l~~l~~~~-----~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~ 270 (426)
+.+++++.++++.|.+++ +..+||+| ++++++|+++..+++..- ...++.+ +|.+. +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd-~~~~~~G~v~~~~l~~~~------------~~~~v~~----~~~~~-~ 63 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVD-EEGRLLGVVSLRDLLLAD------------PDTPVSD----IMDTD-V 63 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEEC-CCCCEEEEEEHHHHhcCC------------CcchHHH----HhCCC-C
Confidence 467889999999998766 46789998 478999999999987520 0234666 66654 8
Q ss_pred eEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHH
Q 014353 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFL 316 (426)
Q Consensus 271 ~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~ 316 (426)
.++.+++++.++++.|.+.+.+.+||+|+++ +++|+|+..|++++
T Consensus 64 ~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvit~~dll~~ 108 (109)
T cd04606 64 ISVSADDDQEEVARLFEKYDLLALPVVDEEG-RLVGIITVDDVIDV 108 (109)
T ss_pred eEEcCCCCHHHHHHHHHHcCCceeeeECCCC-cEEEEEEhHHhhhh
Confidence 9999999999999999999999999999877 99999999999875
No 165
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.18 E-value=5.6e-10 Score=89.59 Aligned_cols=111 Identities=25% Similarity=0.395 Sum_probs=91.6
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
++.++.+++++.++++.|.+++.+.+||++. +++++|+++..|++..+....... ...+.+ +|..+ +.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~~~~------~~~~~~----~~~~~-~~ 69 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-DGRLVGIVTERDLLRALAEGGLDP------LVTVGD----VMTRD-VV 69 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECC-CCCEEEEEeHHHHHHHHHhccCCc------cccHHH----HhcCC-ce
Confidence 4567889999999999999989999999994 689999999999998875432211 011333 45544 88
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
++.+++++.++++.|.+.+.+.+||+|+++ +++|+++..|+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~i~~~dl~~ 112 (113)
T cd02205 70 TVSPDTSLEEAAELMLEHGIRRLPVVDDEG-RLVGIVTRSDILR 112 (113)
T ss_pred ecCCCcCHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEEHHHhhc
Confidence 899999999999999999999999999987 9999999999875
No 166
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.18 E-value=2.1e-10 Score=116.41 Aligned_cols=123 Identities=20% Similarity=0.250 Sum_probs=99.8
Q ss_pred chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCC--CCeEEEEEeHHHHHHHHHhccCcchhhhhccccc
Q 014353 180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLG--EGTIDNIITQSSVIHMLAECAGLEWFESWGKKKL 257 (426)
Q Consensus 180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~--~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v 257 (426)
+|.++|...-. ...++.+++++.+++..|.++++..+||+|.. +++++|+||..|+.... .....++
T Consensus 95 kVk~~~~g~i~-~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~----------~~~~~~V 163 (502)
T PRK07107 95 RVKNYKAGFVV-SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR----------MSLDTKV 163 (502)
T ss_pred HHHHHhcCCcC-CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc----------cCCCCCH
Confidence 46666643212 23589999999999999999999999999932 58999999999985321 0124567
Q ss_pred cccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353 258 SEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT 318 (426)
Q Consensus 258 ~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~ 318 (426)
.+ +|++ .+++++.+++++.+|+++|.+++++.+||+|+++ +++|+||.+|+++...
T Consensus 164 ~d----IMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g-~LvGIIT~~Dilk~~~ 220 (502)
T PRK07107 164 KD----FMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNG-NLVYLVFRKDYDSHKE 220 (502)
T ss_pred HH----HhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEhHHHHhccc
Confidence 77 8885 3489999999999999999999999999999888 9999999999998753
No 167
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.17 E-value=1.4e-10 Score=107.82 Aligned_cols=121 Identities=21% Similarity=0.274 Sum_probs=106.2
Q ss_pred cchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcccccc
Q 014353 179 TKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLS 258 (426)
Q Consensus 179 ~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~ 258 (426)
..|.++|.+.. ....+.+++++.+-..+-.+.+..++||+|. ..+++|++|.+|+..... +.++.
T Consensus 188 ~~Vedi~~P~~--~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~-~~kvvGvVt~rDv~~~~~------------~t~ie 252 (432)
T COG4109 188 ITVEDIMTPLE--DTSYLRETDTVEDWLDLVEKTGHSRFPVVNR-SMKVVGVVTMRDVLDKKP------------STTIE 252 (432)
T ss_pred eeHHHhccccc--cceeccccccHHHHHHHHHHcCCCccceecc-cceEEEEEEehhhhcCCC------------CccHH
Confidence 46889998532 5677889999999999999999999999994 899999999999865432 45677
Q ss_pred ccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCC
Q 014353 259 EIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAP 320 (426)
Q Consensus 259 ~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~ 320 (426)
. +|+++ ++++.+.+++..+.++|.-+++.-+||+|++. +++|+||++|+++.+...
T Consensus 253 K----VMtkn-p~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~-~llGiitR~dvlk~lq~~ 308 (432)
T COG4109 253 K----VMTKN-PITVRAKTSVASVAQMMIWEGIEMLPVVDSNN-TLLGIITRQDVLKSLQMI 308 (432)
T ss_pred H----HhccC-CeeecccchHHHHHHHHHhccceeeeEEcCCc-eEEEEEEHHHHHHHHHHh
Confidence 7 89986 99999999999999999999999999999998 999999999999998643
No 168
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.17 E-value=3.1e-10 Score=115.54 Aligned_cols=126 Identities=15% Similarity=0.284 Sum_probs=104.7
Q ss_pred HhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCC
Q 014353 47 LNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEP 126 (426)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~ 126 (426)
+.+.+..+++.++ |.++++++.+++++.+|++.|.++++..+||+|++ ++++|+|+..|+.+.+.....
T Consensus 328 ~~~~l~~~~v~~i--m~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~--------~~~~Givt~~dl~~~~~~~~~- 396 (454)
T TIGR01137 328 VFDVLKNATVKDL--HLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEA--------GKVLGSVTLRELLSALFAGKA- 396 (454)
T ss_pred HHHHhccCCHHHh--CcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CeEEEEEEHHHHHHHHhccCC-
Confidence 6667889999998 88999999999999999999999999999999987 899999999999876543110
Q ss_pred CCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHH
Q 014353 127 PSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTML 206 (426)
Q Consensus 127 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l 206 (426)
....++.++|.. ++.++.+++++.+++
T Consensus 397 -------------------------------------------------~~~~~v~~im~~----~~~~v~~~~~l~~a~ 423 (454)
T TIGR01137 397 -------------------------------------------------NPDDAVSKVMSK----KFIQIGEGEKLSDLS 423 (454)
T ss_pred -------------------------------------------------CcCCCHHHhcCC----CCeEECCcCcHHHHH
Confidence 112357788876 788999999999999
Q ss_pred HHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHH
Q 014353 207 LLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHML 240 (426)
Q Consensus 207 ~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l 240 (426)
..|.+++ .+|++ ++++++|+||..|+++++
T Consensus 424 ~~~~~~~---~~vV~-~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 424 KFLEKNS---SAIVT-EEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred HHHHHCC---eeEEE-ECCEEEEEEEHHHHHHhh
Confidence 9998753 34555 268999999999999875
No 169
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.17 E-value=4.8e-10 Score=89.89 Aligned_cols=104 Identities=23% Similarity=0.395 Sum_probs=88.8
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCee
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIV 271 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~ 271 (426)
++.++..+.++.+++..|.+.+...+||+| + ++++|+++..|++..- . ..++.+ +|... +.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d-~-~~~~g~v~~~~l~~~~-----~-------~~~~~~----~~~~~-~~ 63 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVD-N-GKVVGIVSARDLLGKD-----P-------DETVEE----IMSKD-LV 63 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEHHHhhccC-----c-------cccHHH----hCCCC-Ce
Confidence 567789999999999999888888999999 4 8999999999987520 0 234666 66654 88
Q ss_pred EeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 272 ~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
++.+++++.++++.|.+++.+.+||+|++| +++|+|+..|+++
T Consensus 64 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g-~~~Gvi~~~di~~ 106 (107)
T cd04610 64 VAVPEMDIMDAARVMFRTGISKLPVVDENN-NLVGIITNTDVIR 106 (107)
T ss_pred EECCCCCHHHHHHHHHHhCCCeEeEECCCC-eEEEEEEHHHhhc
Confidence 999999999999999999999999999888 9999999999974
No 170
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.16 E-value=2.3e-10 Score=113.53 Aligned_cols=124 Identities=27% Similarity=0.397 Sum_probs=106.7
Q ss_pred hccccccccccCCcccCCeeEeCCCCcHHHHHHHHHh-----cCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccc
Q 014353 252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRR-----KKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDY 326 (426)
Q Consensus 252 ~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~-----~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~ 326 (426)
+...+++. +|+.+ .+++.++.|+.+++..+++ ..+..+.|+|.++ +++|++|.++++..
T Consensus 129 y~e~taG~----~Mt~e-~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~-~L~Gvvsl~~Ll~a---------- 192 (451)
T COG2239 129 YPEDTAGR----IMTTE-FVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKG-KLLGVVSLRDLLTA---------- 192 (451)
T ss_pred CChhhhhc----cceee-eEEeccCcCHHHHHHHHHHhcccccccceEEEECCcc-ceEEEeeHHHHhcC----------
Confidence 44566666 89886 9999999999999999985 4468999999998 99999999999866
Q ss_pred ccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353 327 RSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP 406 (426)
Q Consensus 327 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~ 406 (426)
+....+.++|.. .++++.+++..+++.+.|.+++.-.+||||++++++|+||..|++..+-.+.
T Consensus 193 ------~~~~~i~~im~~----------~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa 256 (451)
T COG2239 193 ------EPDELLKDLMED----------DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEA 256 (451)
T ss_pred ------CcHhHHHHHhcc----------cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHH
Confidence 123456666655 7999999999999999999999999999999999999999999999996554
Q ss_pred C
Q 014353 407 P 407 (426)
Q Consensus 407 ~ 407 (426)
.
T Consensus 257 ~ 257 (451)
T COG2239 257 T 257 (451)
T ss_pred H
Confidence 4
No 171
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.16 E-value=3e-10 Score=107.38 Aligned_cols=113 Identities=22% Similarity=0.337 Sum_probs=96.8
Q ss_pred cchhhhccccccCC-cEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccc
Q 014353 179 TKVRDIAGSFRWAP-FLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKL 257 (426)
Q Consensus 179 ~~v~~i~~~~~~~~-~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v 257 (426)
.+++++|.. + +.++.+++++.++++.|.+.+.+++||+| ++++++|+++..|+.+.+..... ...++
T Consensus 155 ~~v~~im~~----~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd-~~g~~~Givt~~dl~~~~~~~~~-------~~~~v 222 (268)
T TIGR00393 155 VKVKDLMQT----TDLPLIAPTTSFKDALLEMSEKRLGSAIVCD-ENNQLVGVFTDGDLRRALLGGGS-------LKSEV 222 (268)
T ss_pred hhHHHHhCC----CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEe-CCCCEEEEEEcHHHHHHHhcCCc-------ccCcH
Confidence 578999986 6 88899999999999999988999999999 47999999999999886542211 13567
Q ss_pred cccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEe
Q 014353 258 SEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNIS 309 (426)
Q Consensus 258 ~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs 309 (426)
.+ +|.+. +.++.+++++.++++.|.+.+...+||+|++| +++|+|+
T Consensus 223 ~~----im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~l~GvI~ 268 (268)
T TIGR00393 223 RD----FMTLG-PKTFKLDALLLEALEFLERRKITSLVVVDDHN-KVLGVLH 268 (268)
T ss_pred HH----hCCCC-CeEECCCCcHHHHHHHHHHcCCcEEEEECCCC-eEEEEEC
Confidence 77 77764 88999999999999999999999999999888 9999985
No 172
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.15 E-value=7.2e-10 Score=89.07 Aligned_cols=99 Identities=20% Similarity=0.317 Sum_probs=86.5
Q ss_pred ceEEEeCCCCHHHHHHHHHHCCcccceeeec---CCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHh
Q 014353 65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDV---DAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAA 141 (426)
Q Consensus 65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~---~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~ 141 (426)
.+..+++++++.++.+.|.+++...+||+|+ + ++++|+|+..|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~--------~~~~G~v~~~dl~~~~~~------------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEES--------PRLVGYILRSQLVVALKN------------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCC--------CEEEEEEeHHHHHHHHHH-------------------
Confidence 5788999999999999999999999999998 5 899999999999754211
Q ss_pred hhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEe
Q 014353 142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVD 221 (426)
Q Consensus 142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd 221 (426)
+|.. ++.++.+++++.+++..|.+++.+.+||++
T Consensus 56 ------------------------------------------~m~~----~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~ 89 (105)
T cd04591 56 ------------------------------------------YIDP----SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD 89 (105)
T ss_pred ------------------------------------------hccC----CCceECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence 3433 677899999999999999999999999996
Q ss_pred CCCCeEEEEEeHHHHHH
Q 014353 222 LGEGTIDNIITQSSVIH 238 (426)
Q Consensus 222 ~~~~~l~Giis~~Dl~~ 238 (426)
+++++|+++..|+++
T Consensus 90 --~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 90 --EGRLVGIITRKDLLK 104 (105)
T ss_pred --CCeEEEEEEhhhhhc
Confidence 689999999999875
No 173
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.14 E-value=4.6e-10 Score=94.36 Aligned_cols=116 Identities=19% Similarity=0.190 Sum_probs=83.2
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccccc-HHHHHHHHHHHhhhcCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT-AKNFLTAVRKYMEEHHHE 348 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~ 348 (426)
+.++.+++++.++++.|.+.+++.+||+|++| +++|+++..|+++++............. ...-...+.+++.. ..+
T Consensus 3 ~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g-~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~ 80 (133)
T cd04592 3 YIKVSPTTTLKEALNLMLDEKQSCVLVVDSDD-FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTK-GIS 80 (133)
T ss_pred ceEECCCCCHHHHHHHHHHcCCCEEEEECCCC-eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhh-hhh
Confidence 78999999999999999999999999999988 9999999999999875432211000000 00001112233321 011
Q ss_pred CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCC
Q 014353 349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNG 387 (426)
Q Consensus 349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~ 387 (426)
.+.|..++.++++++++.+|++.|.+++++++||+|+.+
T Consensus 81 ~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 81 YGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred hcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 223445789999999999999999999999999998653
No 174
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.12 E-value=6.5e-10 Score=112.22 Aligned_cols=117 Identities=26% Similarity=0.388 Sum_probs=99.4
Q ss_pred hhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC---CeEEEEEeHHHHHHHHHhccCcchhhhhccccc
Q 014353 181 VRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE---GTIDNIITQSSVIHMLAECAGLEWFESWGKKKL 257 (426)
Q Consensus 181 v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~---~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v 257 (426)
..+.|.. ++.++.++.++.++++.|.+++++++||+|. + ++++|+++..|+..... ...++
T Consensus 82 ~~~~~~~----~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~-~~~~~~lvGIVt~rDL~~~~~-----------~~~~V 145 (450)
T TIGR01302 82 AENGIIS----DPVTISPETTVADVLELMERKGISGIPVVED-GDMTGKLVGIITKRDIRFVKD-----------KGKPV 145 (450)
T ss_pred ccCceec----CceEeCCCCCHHHHHHHHHHcCCCEEEEEeC-CCCCCeEEEEEEHHHHhhhhc-----------CCCCH
Confidence 4455554 7789999999999999999999999999994 5 79999999999864321 13467
Q ss_pred cccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353 258 SEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT 318 (426)
Q Consensus 258 ~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~ 318 (426)
.+ +|++.+++++.+++++.++++.|.+++.+.+||+|++| +++|+||.+||++...
T Consensus 146 ~d----vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G-~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 146 SE----VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNG-ELVGLITMKDIVKRRK 201 (450)
T ss_pred HH----hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCC-cEEEEEEhHHhhhccc
Confidence 77 77732499999999999999999999999999999988 9999999999998864
No 175
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.10 E-value=2.2e-09 Score=91.41 Aligned_cols=115 Identities=28% Similarity=0.455 Sum_probs=91.5
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccC-cch----------------------
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAG-LEW---------------------- 248 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~-~~~---------------------- 248 (426)
+++++.+++++.++++.|.+++++.+||+| + ++++|+++..|+...+..... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLD-G-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET 79 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeE-C-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence 567889999999999999999999999999 4 899999999999887743221 000
Q ss_pred ---hhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 014353 249 ---FESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 249 ---~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
.......++.+ +|... +.++..++++.++++.|.+.+.+.+||+++ + +++|+++.+|++.
T Consensus 80 ~~~~~~~~~~~v~~----~~~~~-~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~-~~~Gvvt~~dl~~ 142 (143)
T cd04634 80 KRALTDAGKMKVRD----IMTKK-VITISPDASIEDAAELMVRHKIKRLPVVED-G-RLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHHhcCCHHH----HcCCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHhhc
Confidence 00011233444 56654 899999999999999999999999999998 7 9999999999863
No 176
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.08 E-value=3.8e-09 Score=107.41 Aligned_cols=111 Identities=20% Similarity=0.275 Sum_probs=95.3
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCC--CCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCccc-C
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLG--EGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA-N 268 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~--~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~-~ 268 (426)
.++++.+++++.+++.+|.+++++.+||+|.+ +++++|+++..|+... .. ...++.+ +|++ +
T Consensus 105 dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~-~~----------~~~~V~d----iMt~~~ 169 (495)
T PTZ00314 105 DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV-KD----------KSTPVSE----VMTPRE 169 (495)
T ss_pred CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc-cc----------CCCCHHH----hhCCcC
Confidence 66799999999999999999999999999842 3799999999998621 11 1356777 7875 2
Q ss_pred CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT 318 (426)
Q Consensus 269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~ 318 (426)
+++++.+++++.+++++|.++++..+||+|+++ +++|+||++||++...
T Consensus 170 ~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g-~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 170 KLVVGNTPISLEEANEVLRESRKGKLPIVNDNG-ELVALVSRSDLKKNRG 218 (495)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCC-cEEEEEEehHhhhccc
Confidence 489999999999999999999999999999988 9999999999998854
No 177
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.07 E-value=3.2e-09 Score=85.10 Aligned_cols=104 Identities=16% Similarity=0.325 Sum_probs=87.7
Q ss_pred ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353 65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG 144 (426)
Q Consensus 65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g 144 (426)
+++++.++.++.+|+..|.++++..+||+|++ ++++|+++..++... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~g~v~~~~l~~~----~~------------------- 50 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS--------GELVGIITRKDLLRN----PE------------------- 50 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC--------CcEEEEEEHHHHHhc----cc-------------------
Confidence 57899999999999999999999999999988 899999999999631 00
Q ss_pred CccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC
Q 014353 145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE 224 (426)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~ 224 (426)
...+.++|.. +..++.+++++.+++..|.+++.+.+||+| +
T Consensus 51 ---------------------------------~~~~~~~~~~----~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd--~ 91 (106)
T cd04638 51 ---------------------------------EEQLALLMTR----DPPTVSPDDDVKEAAKLMVENNIRRVPVVD--D 91 (106)
T ss_pred ---------------------------------cchHHHHhcC----CCceECCCCCHHHHHHHHHHcCCCEEEEEE--C
Confidence 0124455554 677889999999999999999999999999 3
Q ss_pred CeEEEEEeHHHHHH
Q 014353 225 GTIDNIITQSSVIH 238 (426)
Q Consensus 225 ~~l~Giis~~Dl~~ 238 (426)
++++|+++..|+++
T Consensus 92 ~~~~G~it~~d~~~ 105 (106)
T cd04638 92 GKLVGIVTVADIVR 105 (106)
T ss_pred CEEEEEEEHHHhhc
Confidence 69999999999864
No 178
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.06 E-value=3.2e-09 Score=86.86 Aligned_cols=113 Identities=20% Similarity=0.321 Sum_probs=88.7
Q ss_pred CcEEecCCCCHHHHHHHHhhcC-CcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCe
Q 014353 192 PFLALQKSNSFLTMLLLLSKYK-MKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHI 270 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~-~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~ 270 (426)
++.++.+++++.+++..|...+ .+.+||+| + ++++|+++..|+...+....... .+...++.+ +|... +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd-~-~~~~G~v~~~~l~~~~~~~~~~~---~~~~~~v~~----~~~~~-~ 71 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD-D-GRPVGLIMREALMELLSTPYGRA---LYGKKPVSE----VMDPD-P 71 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEE-C-CeeEEEEEHHHHHHHHhchhhHH---HHcCCcHHH----hcCCC-c
Confidence 4557889999999999998776 88999999 4 99999999999987654311100 012345666 67764 8
Q ss_pred eEeCCCCcHHHHHHHHHhcCCC---eeEEEeCCCCeEEEEEeHHHHHH
Q 014353 271 VKVYEDEPVLQAFKLMRRKKIG---GIPVVEKGGNKAVGNISLRDIQF 315 (426)
Q Consensus 271 ~~v~~~~~v~~a~~~m~~~~~~---~lpVvd~~~~~lvGiIs~~Dl~~ 315 (426)
.++.+++++.++++.|.+++.. ..+|++++| +++|+||..|+++
T Consensus 72 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~-~~~Gvvs~~di~~ 118 (119)
T cd04598 72 LIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEG-RYLGIGTVKDLLR 118 (119)
T ss_pred EEecCCCCHHHHHHHHHcCCcccccccEEEeeCC-eEEEEEEHHHHhc
Confidence 9999999999999999988753 446888877 9999999999864
No 179
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.04 E-value=2.1e-09 Score=90.42 Aligned_cols=108 Identities=19% Similarity=0.269 Sum_probs=79.7
Q ss_pred ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhc
Q 014353 65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNG 144 (426)
Q Consensus 65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g 144 (426)
+++++.+++++.+|++.|.++++.++||+|++ ++++|+|+..|+++++........ .
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~--------g~l~Givt~~Dl~~~~~~~~~~~~---------------~ 58 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD--------DFLEGILTLGDIQRFLFTNKTTRV---------------Q 58 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCC--------CeEEEEEEHHHHHHHHhhcccccc---------------c
Confidence 56899999999999999999999999999998 899999999999987653211000 0
Q ss_pred CccccccccCCCCcccccccchhhcccccccccccchhhhc---------cccccCCcEEecCCCCHHHHHHHHhhcCCc
Q 014353 145 MSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIA---------GSFRWAPFLALQKSNSFLTMLLLLSKYKMK 215 (426)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~---------~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~ 215 (426)
.. . ..+ ......+.++| .. +++++.+++++.+++..|.+++++
T Consensus 59 ---------~~----~----~~~-------~~~~~~v~~i~~~~~~~~~~~~----~~~~v~~~~~l~ea~~~m~~~~~~ 110 (133)
T cd04592 59 ---------PE----D----ETK-------QTNTCLVSSVCTKGISYGGQEC----GLWTCTPDTDLTTAKKLMEAKGVK 110 (133)
T ss_pred ---------cc----h----hhc-------ccccccHHHHhhhhhhhcccCC----CCEEECCCCCHHHHHHHHHHcCCC
Confidence 00 0 000 00011122333 33 788999999999999999999999
Q ss_pred EeEEEeCC
Q 014353 216 SIPVVDLG 223 (426)
Q Consensus 216 ~ipVvd~~ 223 (426)
++||+|..
T Consensus 111 ~lPVvd~~ 118 (133)
T cd04592 111 QLPVVKRG 118 (133)
T ss_pred cCCEecCC
Confidence 99999843
No 180
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.02 E-value=5.3e-10 Score=79.15 Aligned_cols=54 Identities=26% Similarity=0.478 Sum_probs=50.6
Q ss_pred CCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353 351 PLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH 404 (426)
Q Consensus 351 ~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~ 404 (426)
+|.+++.++++++++.++++.|.+++++++||+|++|+++|+||.+||++++.+
T Consensus 4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~~ 57 (57)
T PF00571_consen 4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALLD 57 (57)
T ss_dssp HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHHG
T ss_pred CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhhC
Confidence 456699999999999999999999999999999999999999999999999863
No 181
>PRK11573 hypothetical protein; Provisional
Probab=98.98 E-value=7.7e-09 Score=103.18 Aligned_cols=192 Identities=15% Similarity=0.157 Sum_probs=138.8
Q ss_pred cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcc
Q 014353 175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK 254 (426)
Q Consensus 175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~ 254 (426)
.+.+.+++++|.+. ..+..++.++++.++++.+.+++++++||.+.+.++++|++..+|++..+....... .
T Consensus 183 ~l~~~~v~eiMtPr--~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~~~------~ 254 (413)
T PRK11573 183 DLEKVTVDDIMVPR--NEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFT------K 254 (413)
T ss_pred ccCCCChhhcCCcc--ceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCcCC------H
Confidence 46778999999863 378899999999999999999999999999865689999999999987654221110 1
Q ss_pred ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHH
Q 014353 255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNF 334 (426)
Q Consensus 255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~ 334 (426)
..+.+ +++ ++.+++++.++.++++.|.+++.+-..|+|+.| ...|+||..||+..+.- +..+......
T Consensus 255 ~~l~~----~~r--~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG-~~~GiVTleDilEeivG-ei~de~d~~~---- 322 (413)
T PRK11573 255 ENMLR----AAD--EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYG-DIQGLVTVEDILEEIVG-DFTTSMSPTL---- 322 (413)
T ss_pred HHHHh----hcc--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCC-CeEEEeeHHHHHHHHhC-CCCcccCccc----
Confidence 12223 444 389999999999999999999999999999988 89999999999998752 2222110000
Q ss_pred HHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q 014353 335 LTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG 408 (426)
Q Consensus 335 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~ 408 (426)
-..+.. .....+.++...++.++-+.+-- . +| ++ ..=|...++-..++++|.
T Consensus 323 ---~~~i~~--------~~~~~~~v~G~~~l~d~~~~l~~---~-l~---~~----~~~Tl~G~i~~~lg~iP~ 374 (413)
T PRK11573 323 ---AEEVTP--------QNDGSVIIDGTANVREINKAFNW---H-LP---ED----DARTVNGVILEALEEIPV 374 (413)
T ss_pred ---ccceEE--------ecCCEEEEEeeeEHHHHHHHhCC---C-CC---CC----CCeeHHHHHHHHhCcCCC
Confidence 000000 01245788888999998888733 1 22 11 345777787777777765
No 182
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.91 E-value=4.3e-08 Score=96.04 Aligned_cols=111 Identities=20% Similarity=0.324 Sum_probs=92.6
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
.....++.+..++++.|...+...+.|+|+++ ++.|.++.+++..+..... .+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~---------------~~~~~-------- 307 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVDRQN-KLVGVVDVESIKQARKKAQ---------------GLQDV-------- 307 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEcCCC-CEEEEEeHHHHHHHhhcCC---------------chhhh--------
Confidence 34566777899999999999999999999988 9999999999987754321 12222
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCC
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPP 407 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~ 407 (426)
+...+.++.++++|.+++..|.+++.. +||+|++|+++|+||..++++.+.+.-.
T Consensus 308 --~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~~~ 362 (363)
T TIGR01186 308 --LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDSRE 362 (363)
T ss_pred --hccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhhcc
Confidence 223677999999999999999999998 9999999999999999999999987643
No 183
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.85 E-value=7.1e-09 Score=73.30 Aligned_cols=52 Identities=33% Similarity=0.495 Sum_probs=49.5
Q ss_pred CCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHH
Q 014353 62 PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWIL 121 (426)
Q Consensus 62 ~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~ 121 (426)
|.++++++++++++.+|++.|.++++..+||+|++ ++++|++|..||+++++
T Consensus 5 m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~--------~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 5 MTPPPITVSPDDSLEEALEIMRKNGISRLPVVDED--------GKLVGIISRSDLLKALL 56 (57)
T ss_dssp SBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT--------SBEEEEEEHHHHHHHHH
T ss_pred CcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC--------CEEEEEEEHHHHHhhhh
Confidence 67799999999999999999999999999999998 99999999999998865
No 184
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.81 E-value=3.4e-08 Score=98.28 Aligned_cols=128 Identities=18% Similarity=0.308 Sum_probs=111.4
Q ss_pred HHhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHH-----CCcccceeeecCCCCCcccccceEEEeehHHHHHHH
Q 014353 46 KLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQ-----HRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWI 120 (426)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~-----~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l 120 (426)
++++..+.-+-++-..|+.+.+++.++.|+.+|+..+++ ..+..+.|+|.+ ++++|+++.++++..
T Consensus 122 ~v~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~--------~~L~Gvvsl~~Ll~a- 192 (451)
T COG2239 122 RVRQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK--------GKLLGVVSLRDLLTA- 192 (451)
T ss_pred HHHHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc--------cceEEEeeHHHHhcC-
Confidence 477777777777666699999999999999999999994 567899999998 899999999999621
Q ss_pred HhhcCCCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCC
Q 014353 121 LHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSN 200 (426)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~ 200 (426)
.+..+++++|.. .++.+.+++
T Consensus 193 -------------------------------------------------------~~~~~i~~im~~----~~~~V~~~~ 213 (451)
T COG2239 193 -------------------------------------------------------EPDELLKDLMED----DVVSVLADD 213 (451)
T ss_pred -------------------------------------------------------CcHhHHHHHhcc----cceeecccC
Confidence 123468899987 789999999
Q ss_pred CHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353 201 SFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAE 242 (426)
Q Consensus 201 ~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~ 242 (426)
+.+++...+.++++-++||+| ++++++|++|..|++..+.+
T Consensus 214 dqeevA~~~~~ydl~a~PVVd-~~~~LiG~itiDDiidvi~e 254 (451)
T COG2239 214 DQEEVARLFEKYDLLAVPVVD-EDNRLIGIITIDDIIDVIEE 254 (451)
T ss_pred CHHHHHHHHHHhCCeecceEC-CCCceeeeeeHHHHHHHHHH
Confidence 999999999999999999999 58999999999999998854
No 185
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=1.2e-07 Score=94.06 Aligned_cols=106 Identities=20% Similarity=0.254 Sum_probs=88.6
Q ss_pred eCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCC
Q 014353 273 VYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPL 352 (426)
Q Consensus 273 v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 352 (426)
..++.+..+++..|...+...++|+|+++ ++.|+++..++........ .+.+.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~---------------~~~~~~---------- 343 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERGN-KFVGAVSIDSLKTALTQQQ---------------GLDAAL---------- 343 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCCC-cEEEEEeHHHHHhhhhcCC---------------chhhhh----------
Confidence 44667889999999999999999999988 9999999999987643221 122222
Q ss_pred cCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 353 LSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 353 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
.....++.+++++.+++..|.++... +||||++|+++|+||..++++.+.+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 344 IDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred ccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 22678999999999999999998776 99999999999999999999999765
No 186
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.78 E-value=9.7e-08 Score=96.13 Aligned_cols=190 Identities=18% Similarity=0.178 Sum_probs=137.9
Q ss_pred cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcc
Q 014353 175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK 254 (426)
Q Consensus 175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~ 254 (426)
.+.+.+++++|.+ +..+..++.+.++.+++..+.+++++++||++.+.+.++|++..+|++........ .
T Consensus 202 ~l~~~~v~eiMtP--R~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~------- 271 (429)
T COG1253 202 DLDDRTVREIMTP--RTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-D------- 271 (429)
T ss_pred ccCCcEeeeEeee--cccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-c-------
Confidence 4667899999987 33688888899999999999999999999999667899999999999998865421 0
Q ss_pred ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHH
Q 014353 255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNF 334 (426)
Q Consensus 255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~ 334 (426)
..... ... +++.++++.++.++++.|.+++.+-..|+|+-| .+.|+||..||+..+. ++..+......
T Consensus 272 ~~~~~----~~~--~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG-~~~GlVTleDIiEeIv-Gei~de~d~~~---- 339 (429)
T COG1253 272 LDLRV----LVR--PPLFVPETLSLSDLLEEFREERTHMAIVVDEYG-GVEGLVTLEDIIEEIV-GEIPDEHDEDE---- 339 (429)
T ss_pred cchhh----ccc--CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCC-CeEEEeEHHHHHHHHh-CCCcCcccccc----
Confidence 01111 222 489999999999999999999999999999998 8999999999999975 33332221100
Q ss_pred HHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCC
Q 014353 335 LTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPP 407 (426)
Q Consensus 335 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~ 407 (426)
...+. ...... +.+.....+.++.+.+-..- ++++ .+=|..-++-...+.++
T Consensus 340 ~~~~~----------~~~~~~-~~v~G~~~l~e~~~~l~~~~-------~~~~---~~~Ti~G~v~~~lg~iP 391 (429)
T COG1253 340 EEDII----------QRDDDG-WLVDGRVPLEELEELLGIDL-------DEEE---DYDTIAGLVLSLLGRIP 391 (429)
T ss_pred cccce----------EecCCc-EEEeccccHHHHHHHhCCCC-------cccC---CcccHHHHHHHHhCcCC
Confidence 00000 001123 77888888888887765532 2221 34566777777777766
No 187
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.54 E-value=1.8e-07 Score=89.00 Aligned_cols=109 Identities=28% Similarity=0.371 Sum_probs=92.6
Q ss_pred CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC--CCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcC
Q 014353 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG--GNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHH 346 (426)
Q Consensus 269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~--~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 346 (426)
+++..+++.++-++++.-..+++..+||+++. +.+++|+||.+|+-.. .++ ..
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~~--------------~~---------- 171 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-EDN--------------SL---------- 171 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hcc--------------cc----------
Confidence 37888999999999999999999999999752 2489999999999766 221 11
Q ss_pred CCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 014353 347 HEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRL 402 (426)
Q Consensus 347 ~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l 402 (426)
.+.++|++.+++...+.+|.++-+.+.+++...+||||++|+++.+|+++||.+.-
T Consensus 172 ~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 172 LVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred hhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence 23345555779999999999999999999999999999999999999999998875
No 188
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.49 E-value=3.9e-07 Score=91.12 Aligned_cols=138 Identities=17% Similarity=0.251 Sum_probs=106.1
Q ss_pred CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCC----CeEEEEEeHHHHHHHhhCCccccc---c------cccc
Q 014353 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGG----NKAVGNISLRDIQFLLTAPEIYHD---Y------RSIT 330 (426)
Q Consensus 264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~----~~lvGiIs~~Dl~~~~~~~~~~~~---~------~~~~ 330 (426)
+|++ +++++..-+.+..+.+.+....++++||||+.. +++.|+|-++.++..+.+...... . +...
T Consensus 587 v~~~-pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~ 665 (762)
T KOG0474|consen 587 VMSK-PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFT 665 (762)
T ss_pred hccC-CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCC
Confidence 7887 599999999999999999999999999999732 278999999999998865532211 0 1111
Q ss_pred HHHHHH---HHHHH------hhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 014353 331 AKNFLT---AVRKY------MEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR 401 (426)
Q Consensus 331 ~~~~~~---~v~~~------~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~ 401 (426)
..++.. .+.+. ++.-.+....|++.|+++.+++++..+..+|.+-+++++.||+..++++|++|++|+...
T Consensus 666 ~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 666 FRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARY 745 (762)
T ss_pred HHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhH
Confidence 122211 11111 111126667889999999999999999999999999999999999999999999999965
Q ss_pred H
Q 014353 402 L 402 (426)
Q Consensus 402 l 402 (426)
=
T Consensus 746 ~ 746 (762)
T KOG0474|consen 746 R 746 (762)
T ss_pred H
Confidence 4
No 189
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.48 E-value=2.3e-06 Score=81.12 Aligned_cols=152 Identities=18% Similarity=0.257 Sum_probs=118.0
Q ss_pred cccccchhhhcCCC---CCh----hHHHhhhh--ccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCC
Q 014353 27 GMKVEDLWDVLEPQ---LSP----TEKLNACF--ESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDA 97 (426)
Q Consensus 27 ~~~~~~~~~~l~~~---~~~----~~~~~~~~--~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~ 97 (426)
.+|.++|--+.+.+ +++ .+-|-..+ +.++++++-.+...+..++.|++.++.++.+...-...+|||..+.
T Consensus 164 ~~s~EElR~~v~~~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~ 243 (423)
T COG4536 164 LSSKEELRTAVNESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDL 243 (423)
T ss_pred ccCHHHHHHHHHHhhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCCh
Confidence 45566666664332 333 13344433 4899999955588999999999999999999999999999999886
Q ss_pred CCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhccccccccc
Q 014353 98 PEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYK 177 (426)
Q Consensus 98 ~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 177 (426)
++++||+..+|+++++.+..+ +.
T Consensus 244 -------DnIiGvlh~r~llr~l~e~~~--------------------------------------------------~~ 266 (423)
T COG4536 244 -------DNIIGVLHVRDLLRLLNEKNE--------------------------------------------------FT 266 (423)
T ss_pred -------hHhhhhhhHHHHHHHhhccCc--------------------------------------------------cc
Confidence 889999999999998765421 11
Q ss_pred ccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHH
Q 014353 178 NTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLA 241 (426)
Q Consensus 178 ~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~ 241 (426)
...+..+.. +++++++.+++.+.+..|.+++-|.-.|+| +-|.+.|++|..|++.-+.
T Consensus 267 k~d~~~~a~-----epyFVPe~Tpl~~QL~~F~~~k~hialVVD-EYG~i~GLVTLEDIlEEIV 324 (423)
T COG4536 267 KEDILRAAD-----EPYFVPEGTPLSDQLVAFQRNKKHIALVVD-EYGDIQGLVTLEDILEEIV 324 (423)
T ss_pred HhHHHHHhc-----CCeecCCCCcHHHHHHHHHHhcceEEEEEe-ccCcEEeeeeHHHHHHHHh
Confidence 112222223 778999999999999999999999889999 4899999999999988774
No 190
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.36 E-value=1.1e-06 Score=77.91 Aligned_cols=127 Identities=17% Similarity=0.246 Sum_probs=106.4
Q ss_pred cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcc
Q 014353 175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK 254 (426)
Q Consensus 175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~ 254 (426)
......|+++|-+. ...+++..+.++.+++..+++...+++||+..+...+.||+-.+||+.++..... .
T Consensus 63 ~iadl~vrDiMIPR--SQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~--------~ 132 (293)
T COG4535 63 DIADLRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE--------P 132 (293)
T ss_pred HHHHhhHhhhcccH--HHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc--------c
Confidence 35567899999641 2688999999999999999999999999998778899999999999999864422 1
Q ss_pred ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353 255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT 318 (426)
Q Consensus 255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~ 318 (426)
..+.+ +.. +.+.++++..+.-.++-++.++.+-..|+|+-| -+-|+||..|++..+.
T Consensus 133 F~i~~----lLR--Pav~VPESKrvd~lLkeFR~~RnHMAIViDEfG-gVsGLVTIEDiLEqIV 189 (293)
T COG4535 133 FDIKE----LLR--PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFG-GVSGLVTIEDILEQIV 189 (293)
T ss_pred ccHHH----hcc--cceecccchhHHHHHHHHHhhcCceEEEEeccC-CeeeeEEHHHHHHHHh
Confidence 23444 444 378999999999999999999999999999988 8999999999998864
No 191
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.35 E-value=7.8e-06 Score=80.25 Aligned_cols=107 Identities=16% Similarity=0.253 Sum_probs=88.9
Q ss_pred EEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEe
Q 014353 194 LALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKV 273 (426)
Q Consensus 194 ~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v 273 (426)
....++.+..+++..|...+...+.|+| +++++.|+++..++..++... ..+.+ .+... +.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~-----------~~~~~----~~~~~-~~~~ 315 (363)
T TIGR01186 253 ITKTADKGPRSALQLMRDERVDSLYVVD-RQNKLVGVVDVESIKQARKKA-----------QGLQD----VLIDD-IYTV 315 (363)
T ss_pred eeecCCCCHHHHHHHHHhcCCceEEEEc-CCCCEEEEEeHHHHHHHhhcC-----------Cchhh----hhccC-CceE
Confidence 3456677889999999999999999999 589999999999987766432 12344 34443 7889
Q ss_pred CCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353 274 YEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA 319 (426)
Q Consensus 274 ~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~ 319 (426)
.+++++.+++..|.++++. +||+|++| +++|+|+..+++..+..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 316 DAGTLLRETVRKVLKAGIK-VPVVDEDQ-RLVGIVTRGSLVDALYD 359 (363)
T ss_pred CCCCcHHHHHHHHHhCCCC-EEEECCCC-cEEEEEEHHHHHHHHHh
Confidence 9999999999999999998 99999988 99999999999998754
No 192
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.26 E-value=2.3e-06 Score=85.83 Aligned_cols=136 Identities=21% Similarity=0.375 Sum_probs=106.1
Q ss_pred cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC----CeEEEEEeHHHHHHHHHhccCcch--
Q 014353 175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE----GTIDNIITQSSVIHMLAECAGLEW-- 248 (426)
Q Consensus 175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~----~~l~Giis~~Dl~~~l~~~~~~~~-- 248 (426)
...+..++++|++ |++++..-+.+..+.+.+.++.++.+||+|... +++.|+|-++.++..+......+.
T Consensus 578 ~mr~L~a~ev~~~----pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~ 653 (762)
T KOG0474|consen 578 YMRNLTAGEVMSK----PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESR 653 (762)
T ss_pred HhhhhhHhhhccC----CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCc
Confidence 4556789999998 999999999999999999999999999998433 478999999999888854321110
Q ss_pred ----hh--------hh--cccccccccc------------CCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCC
Q 014353 249 ----FE--------SW--GKKKLSEIGL------------PIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGN 302 (426)
Q Consensus 249 ----~~--------~~--~~~~v~~~~~------------~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~ 302 (426)
.. .+ ...+++++.+ .+|++. ++++.+++++..++.+++.-+.+.+.||+...
T Consensus 654 ~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~s-PytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~- 731 (762)
T KOG0474|consen 654 STFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPS-PYTVPETMSLAKAFILFRQLGLRHLLVVPKTN- 731 (762)
T ss_pred cccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCC-CcccCcccchHHHHHHHHHhcceeEEEecCCC-
Confidence 00 00 0111222211 167775 99999999999999999999999999999988
Q ss_pred eEEEEEeHHHHHHH
Q 014353 303 KAVGNISLRDIQFL 316 (426)
Q Consensus 303 ~lvGiIs~~Dl~~~ 316 (426)
+++|++|++|+...
T Consensus 732 ~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 732 RVVGILTRKDLARY 745 (762)
T ss_pred ceeEEEehhhhhhH
Confidence 89999999999866
No 193
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.26 E-value=1.1e-05 Score=80.18 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=87.5
Q ss_pred ecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCC
Q 014353 196 LQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYE 275 (426)
Q Consensus 196 v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~ 275 (426)
..++.+..+++..|...+...+.|+| +++++.|+++..++.+..... ..+.+ .+... ..++.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~-----------~~~~~----~~~~~-~~~~~~ 352 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIE-RGNKFVGAVSIDSLKTALTQQ-----------QGLDA----ALIDA-PLAVDA 352 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEc-CCCcEEEEEeHHHHHhhhhcC-----------Cchhh----hhccC-CceeCC
Confidence 34666889999999999999999999 489999999999987665422 12333 33443 789999
Q ss_pred CCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCC
Q 014353 276 DEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAP 320 (426)
Q Consensus 276 ~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~ 320 (426)
++++.+++..+.+.... +||+|++| +++|+|+..++++.+...
T Consensus 353 ~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 353 QTPLSELLSHVGQAPCA-VPVVDEDQ-QYVGIISKGMLLRALDRE 395 (400)
T ss_pred CCCHHHHHHHHHhCCCc-EEEECCCC-cEEEEEEHHHHHHHHHhc
Confidence 99999999999997766 99999988 999999999999998654
No 194
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.21 E-value=3.5e-06 Score=80.44 Aligned_cols=109 Identities=20% Similarity=0.261 Sum_probs=92.5
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeC--CCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCC
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDL--GEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANH 269 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~--~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~ 269 (426)
.++...|+.++.++++....+++..+||... -..+++|+||.+|+ .++.++ ...+.+ +|+++
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi-~f~~~~----------~~~~~~----vmt~~- 180 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI-QFLEDN----------SLLVSD----VMTKN- 180 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh-hhhhcc----------cchhhh----hcccc-
Confidence 4567889999999999999999999999952 13689999999995 454322 345666 89887
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLL 317 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~ 317 (426)
.++...+.++.++-+++.+.+-..+||||+++ +++.+|++.||.+.-
T Consensus 181 ~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~g-elva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 181 PVTGAQGITLKEANEILKKIKKGKLPVVDDKG-ELVAMLSRTDLMKNR 227 (503)
T ss_pred cccccccccHHHHHHHHHhhhcCCcceeccCC-ceeeeeehhhhhhhc
Confidence 58999999999999999999999999999998 999999999998763
No 195
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.03 E-value=1.7e-05 Score=52.76 Aligned_cols=47 Identities=45% Similarity=0.644 Sum_probs=43.6
Q ss_pred ceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 014353 356 MVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRL 402 (426)
Q Consensus 356 ~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l 402 (426)
+.++.+++++.++++.|..++.+.+||++++++++|+++..++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 46889999999999999999999999999889999999999998765
No 196
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.99 E-value=1.1e-05 Score=65.47 Aligned_cols=50 Identities=30% Similarity=0.452 Sum_probs=45.4
Q ss_pred CCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 351 PLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 351 ~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
+|...+.++++++++.++++.|.+++.+.+||+|++|+++|+||..||.+
T Consensus 63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 34448899999999999999999999999999999899999999999864
No 197
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.93 E-value=1.1e-05 Score=65.52 Aligned_cols=54 Identities=26% Similarity=0.418 Sum_probs=48.6
Q ss_pred CCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHH
Q 014353 54 IPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIA 117 (426)
Q Consensus 54 ~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~ 117 (426)
.+++++ |.+++.++++++++.+|++.|.+++++.+||+|++ ++++|+|+..||.
T Consensus 58 ~~v~di--m~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--------~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDV--INRKPVTARPNDPLREALNLMHEHNIRTLPVVDDD--------GTPAGIITLLDLA 111 (113)
T ss_pred hhHHHh--cCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCC--------CeEEEEEEHHHhh
Confidence 445565 67788999999999999999999999999999988 8999999999985
No 198
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.83 E-value=6e-05 Score=50.00 Aligned_cols=46 Identities=41% Similarity=0.604 Sum_probs=42.5
Q ss_pred eEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHH
Q 014353 66 VIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVW 119 (426)
Q Consensus 66 vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~ 119 (426)
++++.+++++.++++.|.++++..+||++++ ++++|+++..++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE--------GRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC--------CeEEEEEEHHHHHHh
Confidence 5678999999999999999999999999987 899999999999764
No 199
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.75 E-value=0.0003 Score=71.12 Aligned_cols=140 Identities=14% Similarity=0.200 Sum_probs=96.8
Q ss_pred cccccchhhhccccccC-CcEEecCC-CCHHHHHHHHhhcCCcEeEEE-eCCCCeEEEEEeHHHHHHHHHhccCcchhhh
Q 014353 175 FYKNTKVRDIAGSFRWA-PFLALQKS-NSFLTMLLLLSKYKMKSIPVV-DLGEGTIDNIITQSSVIHMLAECAGLEWFES 251 (426)
Q Consensus 175 ~~~~~~v~~i~~~~~~~-~~~~v~~~-~~l~~~l~~l~~~~~~~ipVv-d~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~ 251 (426)
.+..+-..++|.+.+.+ ++.....+ .++.|+..+|.+...+..||+ ++++++++|++..+++...+.+.+..+.+..
T Consensus 539 e~~~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~ 618 (696)
T KOG0475|consen 539 EFSSTLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIV 618 (696)
T ss_pred ccccchhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccce
Confidence 33333344566655544 35555444 589999999999888888887 5457899999999999888853322111100
Q ss_pred ----hcccccc--------cccc-CCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 014353 252 ----WGKKKLS--------EIGL-PIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLL 317 (426)
Q Consensus 252 ----~~~~~v~--------~~~~-~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~ 317 (426)
....+.. .+++ .+|... +.++...++...+++++++-+++...|. ++| ++.|+||.+|+++..
T Consensus 619 ~~~~~f~~~~~~~~~~~~~~~~lk~il~~t-p~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G-~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 619 TTSIYFNDPSPSAVAGIPSRLDLKDILDMT-PFTVTDLTPMETVVDLFRKLGLRQILVT-KNG-ILLGIITKKDCLRHT 694 (696)
T ss_pred ecccccCCCCccccCCCCCCcCceeeccCC-cccccccCcHHHHHHHHHhhCceEEEEc-cCC-eeEeeeehHHHHHhh
Confidence 0011111 1111 267765 8999999999999999999999888775 457 999999999999875
No 200
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.39 E-value=0.0021 Score=65.19 Aligned_cols=138 Identities=19% Similarity=0.218 Sum_probs=96.5
Q ss_pred CCceEEEeCC-CCHHHHHHHHHHCCcccceeeec-CCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHH
Q 014353 63 PSQVIEIKSD-TSLAEAVEILAQHRILSAPVVDV-DAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAA 140 (426)
Q Consensus 63 ~~~vi~v~~~-~sl~~A~~~l~~~~i~slPVvd~-~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~ 140 (426)
...++++..+ .++.|...+|.+......||+=+ ++ ++++|+|+.+|+...+........+...
T Consensus 555 ~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~s-------q~lvGfv~rr~l~~~i~~ar~~q~~~~~-------- 619 (696)
T KOG0475|consen 555 ESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDS-------QRLVGFVLRRNLFLAILNARKIQSFIVT-------- 619 (696)
T ss_pred chhheeccccceeHHHHHHHHhhcccCCceEEEcccc-------ceeEEEEchHHHHHHHhhhcccccccee--------
Confidence 4467777777 99999999999999999999754 43 8999999999999888754322221100
Q ss_pred hhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEE
Q 014353 141 AVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVV 220 (426)
Q Consensus 141 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVv 220 (426)
.....+.+.+... ...-.....+++|.- .+.++...+|++-+++++.+-+++.+.|.
T Consensus 620 ----------~~~~f~~~~~~~~---------~~~~~~~~lk~il~~----tp~tv~d~tp~~~v~~~F~~lg~~~~~v~ 676 (696)
T KOG0475|consen 620 ----------TSIYFNDPSPSAV---------AGIPSRLDLKDILDM----TPFTVTDLTPMETVVDLFRKLGLRQILVT 676 (696)
T ss_pred ----------cccccCCCCcccc---------CCCCCCcCceeeccC----CcccccccCcHHHHHHHHHhhCceEEEEc
Confidence 0011111111000 001122345666664 56788889999999999999999988887
Q ss_pred eCCCCeEEEEEeHHHHHHHH
Q 014353 221 DLGEGTIDNIITQSSVIHML 240 (426)
Q Consensus 221 d~~~~~l~Giis~~Dl~~~l 240 (426)
. +|++.|+||.+|++++.
T Consensus 677 ~--~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 677 K--NGILLGIITKKDCLRHT 694 (696)
T ss_pred c--CCeeEeeeehHHHHHhh
Confidence 6 89999999999998864
No 201
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.22 E-value=0.001 Score=62.58 Aligned_cols=149 Identities=17% Similarity=0.251 Sum_probs=101.7
Q ss_pred cEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhh---hccccccccccCCcccCC-eeEeCCCCcHHHHHHHHHhcC
Q 014353 215 KSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFES---WGKKKLSEIGLPIMSANH-IVKVYEDEPVLQAFKLMRRKK 290 (426)
Q Consensus 215 ~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~---~~~~~v~~~~~~im~~~~-~~~v~~~~~v~~a~~~m~~~~ 290 (426)
++|.++. +|+++.+=|..+++..-.+..-..++.. ..-.+..+ +|.... ...-.+...-..++..+.+..
T Consensus 233 ~rIaimk--dG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~VltA~~----IM~~~~~~~~~~~~~~~~~al~~~~~~~ 306 (386)
T COG4175 233 DRIAIMK--DGEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVLTAKD----IMRRPDLLIRKTPGDGPRVALKLLRDEG 306 (386)
T ss_pred ceEEEec--CCeEEEeCCHHHHHcCccHHHHHHHHhcCChhheeeHHH----hhcccccccccccccccchhhhhhhhcc
Confidence 4566665 7999999999888664432211111111 11123333 666311 222222334446778888888
Q ss_pred CCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHH
Q 014353 291 IGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIH 370 (426)
Q Consensus 291 ~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~ 370 (426)
.+.+.+++..+ +.+|+++..++..... ...+.++..++++.+.+.
T Consensus 307 ~~~~~~~~~~~-~~~g~v~~~~~~~~~~----------------------------------~~~~~~v~~d~~~~~~~~ 351 (386)
T COG4175 307 REYGYAVDRGN-KFVGVVSIDSLVKAAL----------------------------------IDDVLTVDADTPLSEILA 351 (386)
T ss_pred chhhHHHhccC-ceeeEEeccchhcccc----------------------------------cccccccCccchHHHHHH
Confidence 87888888665 8999999998876511 126678999999999998
Q ss_pred HHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 371 LLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 371 ~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
.+.+... .++|+|++++++|+|+...++.++.+.
T Consensus 352 ~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~~~ 385 (386)
T COG4175 352 RIRQAPC-PVAVVDEDGRYVGIISRGELLEALARI 385 (386)
T ss_pred HHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHhcC
Confidence 8887766 577999999999999999999998764
No 202
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.16 E-value=0.0048 Score=61.07 Aligned_cols=83 Identities=13% Similarity=0.118 Sum_probs=61.9
Q ss_pred cCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC-CccccccccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHH
Q 014353 289 KKIGGIPVVEKGGNKAVGNISLRDIQFLLTA-PEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKE 367 (426)
Q Consensus 289 ~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~ 367 (426)
++...++|+|. |+++..+...+... .+ ..+.+ + .....++++++++.+
T Consensus 298 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--------------~~~~~-~----------~~~~~~~~~~~~~~~ 346 (382)
T TIGR03415 298 RRDTWLFTIDK------QVRRRDAKLPVQAWAAE--------------QEVES-L----------EAAPTVINPDTLMRD 346 (382)
T ss_pred cccceeEeecc------ceecccchHhHhhcccc--------------cchhh-h----------cccCcccCCCCcHHH
Confidence 78888999984 78887776654321 11 01121 1 225678999999999
Q ss_pred HHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353 368 LIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH 404 (426)
Q Consensus 368 ~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~ 404 (426)
++..+...+. -++|+|+ |+++|+|+..++++.+.+
T Consensus 347 ~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 347 VLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred HHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHhc
Confidence 9998888775 4788885 999999999999999864
No 203
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.93 E-value=0.06 Score=50.95 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=80.1
Q ss_pred cchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcccccc
Q 014353 179 TKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLS 258 (426)
Q Consensus 179 ~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~ 258 (426)
.+..++|.. .++.+.-.+...-..++..+.+.+.+.+.+++ ..++.+|+++..+++..
T Consensus 274 ltA~~IM~~--~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~-~~~~~~g~v~~~~~~~~------------------- 331 (386)
T COG4175 274 LTAKDIMRR--PDLLIRKTPGDGPRVALKLLRDEGREYGYAVD-RGNKFVGVVSIDSLVKA------------------- 331 (386)
T ss_pred eeHHHhhcc--cccccccccccccchhhhhhhhccchhhHHHh-ccCceeeEEeccchhcc-------------------
Confidence 467778874 11222223333334567777777777777777 47789999998886553
Q ss_pred ccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353 259 EIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA 319 (426)
Q Consensus 259 ~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~ 319 (426)
. .. . .+.++..++++.+.+..+.+.+. .++|+|+++ +++|+|++..++.++..
T Consensus 332 ~----~~-~-~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~-r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 A----LI-D-DVLTVDADTPLSEILARIRQAPC-PVAVVDEDG-RYVGIISRGELLEALAR 384 (386)
T ss_pred c----cc-c-cccccCccchHHHHHHHHhcCCC-ceeEEcCCC-cEEEEecHHHHHHHHhc
Confidence 0 11 2 37888999999999998887765 788999998 99999999999998753
No 204
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=94.83 E-value=0.21 Score=52.21 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=53.5
Q ss_pred ccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC-CeEEEEEeHHHHHHHHHhccC
Q 014353 178 NTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE-GTIDNIITQSSVIHMLAECAG 245 (426)
Q Consensus 178 ~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~-~~l~Giis~~Dl~~~l~~~~~ 245 (426)
...|+++|-+ ++..+..+++..|+-+.+..+.++.+|+++..+ .-++|.|.++.|..++..+..
T Consensus 587 ~v~VE~iMV~----dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig 651 (931)
T KOG0476|consen 587 TVKVEHIMVT----DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIG 651 (931)
T ss_pred EEEeeeeccc----cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcC
Confidence 3468999998 999999999999999998876699999997543 458999999999999876533
No 205
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.60 E-value=0.19 Score=49.85 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=70.8
Q ss_pred ccchhhhccccccCCcEEe-cCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcccc
Q 014353 178 NTKVRDIAGSFRWAPFLAL-QKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKK 256 (426)
Q Consensus 178 ~~~v~~i~~~~~~~~~~~v-~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~ 256 (426)
-.++.++|. +...+ ..+.+ .++.. ++...+.|+|. |+++..+.......... ..
T Consensus 273 ~l~a~~~m~-----~~~~~~~~~~~--~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~~---------~~ 327 (382)
T TIGR03415 273 VLTARSLMR-----PLTDLEHVDGG--WCVSD---RRDTWLFTIDK------QVRRRDAKLPVQAWAAE---------QE 327 (382)
T ss_pred ceeHHHHhc-----ccccccccCcc--hhhhh---cccceeEeecc------ceecccchHhHhhcccc---------cc
Confidence 346778885 32223 22222 23332 67888888882 78887776554432111 12
Q ss_pred ccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353 257 LSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT 318 (426)
Q Consensus 257 v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~ 318 (426)
+.++ .. .+.++.+++++.+++..+.+.++ -++|+|+ | +++|+|++.+++..+.
T Consensus 328 ~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~-~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 328 VESL-----EA-APTVINPDTLMRDVLAARHRTGG-AILLVEN-G-RIVGVIGDDNIYHALL 380 (382)
T ss_pred hhhh-----cc-cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-C-eEEEEEeHHHHHHHHh
Confidence 2221 12 37888999999999999888775 5888886 7 9999999999998864
No 206
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=94.06 E-value=0.52 Score=49.44 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=56.1
Q ss_pred hccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhc
Q 014353 51 FESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQS 124 (426)
Q Consensus 51 ~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~ 124 (426)
.-.+.++.| |-+++..|..++|..|--+.+....++++|+||+... .-++|.|..+.+...+-.+.
T Consensus 585 ~h~v~VE~i--MV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~es------miLlGSV~R~~L~~ll~~~i 650 (931)
T KOG0476|consen 585 VHTVKVEHI--MVTDVKYITKDTTYRELREALQTTTLRSFPLVESKES------MILLGSVARRYLTALLQRHI 650 (931)
T ss_pred eeEEEeeee--ccccceeeeccCcHHHHHHHHHhCccceeccccCccc------ceeeehhHHHHHHHHHHhhc
Confidence 335666777 8999999999999999999999999999999997542 78999999999998876543
No 207
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=89.48 E-value=0.69 Score=47.48 Aligned_cols=125 Identities=16% Similarity=0.179 Sum_probs=84.9
Q ss_pred Cccc-CCeeEeCCCCcHH-HHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHH
Q 014353 264 IMSA-NHIVKVYEDEPVL-QAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKY 341 (426)
Q Consensus 264 im~~-~~~~~v~~~~~v~-~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 341 (426)
+|++ +++.....+..+. +....+.+.+++++||.+.+....+|..=...++.+......+.
T Consensus 209 vmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~~~~----------------- 271 (498)
T KOG2118|consen 209 VMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEVPLE----------------- 271 (498)
T ss_pred hccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccccccc-----------------
Confidence 7776 4567777777766 55666779999999999875534444433333333332111110
Q ss_pred hhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCcc
Q 014353 342 MEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYF 410 (426)
Q Consensus 342 ~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~~ 410 (426)
..++...+-.....++.+.++.+.++.|.+.+.|.+.|.+ ...-+++++..|+ .....+.....
T Consensus 272 ---~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~-~~~~~ev~de~ 335 (498)
T KOG2118|consen 272 ---PLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL-EEVVKEVEDEE 335 (498)
T ss_pred ---cccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch-hhhcceecccc
Confidence 1122333344788999999999999999999999998888 5678999999998 66655555444
No 208
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=89.32 E-value=0.71 Score=42.64 Aligned_cols=116 Identities=18% Similarity=0.177 Sum_probs=67.1
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccccc---HHH-HHHHHHHHhhhc
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT---AKN-FLTAVRKYMEEH 345 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~---~~~-~~~~v~~~~~~~ 345 (426)
++.| +..+.||+++- .++.|.++ | +++=+-+..+++..-. ++...++-... ... ....+.+.+...
T Consensus 189 ivfV--THDidEA~kLa-----dri~vm~~-G-~i~Q~~~P~~il~~Pa-n~FV~~f~g~~~~~~~~l~~~~~~~~~~~~ 258 (309)
T COG1125 189 IVFV--THDIDEALKLA-----DRIAVMDA-G-EIVQYDTPDEILANPA-NDFVEDFFGESERGLRLLSLVSVADAVRRG 258 (309)
T ss_pred EEEE--ecCHHHHHhhh-----ceEEEecC-C-eEEEeCCHHHHHhCcc-HHHHHHHhccccccccccchhhHHHhhccc
Confidence 5555 44567888554 35778875 6 8999999877765421 11110000000 000 001122222110
Q ss_pred CCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 014353 346 HHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR 401 (426)
Q Consensus 346 ~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~ 401 (426)
.. ..--.........+++..+...+...+||+|++|+++|.||..+|+..
T Consensus 259 ~~------~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 259 EP------ADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred cc------ccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 00 011223344455668889999999999999999999999999999875
No 209
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=84.39 E-value=1.3 Score=40.98 Aligned_cols=40 Identities=25% Similarity=0.156 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHH
Q 014353 72 DTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVW 119 (426)
Q Consensus 72 ~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~ 119 (426)
...-.+|+..+...+...+||+|++ |+++|.++..+++..
T Consensus 269 ~~~~~~~ls~~~~~~~~~~~Vvd~~--------g~~~G~vt~~~l~~~ 308 (309)
T COG1125 269 GFVDRDALSDFLARGRSVLPVVDED--------GRPLGTVTRADLLDE 308 (309)
T ss_pred chhhHHHHHHHHhcCCceeEEECCC--------CcEeeEEEHHHHhhh
Confidence 4455669999999999999999999 999999999999754
No 210
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=77.60 E-value=9.1 Score=40.87 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=59.7
Q ss_pred HHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhc---cCcchhhhhccccccccccC-CcccCCeeEeCCCC
Q 014353 202 FLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAEC---AGLEWFESWGKKKLSEIGLP-IMSANHIVKVYEDE 277 (426)
Q Consensus 202 l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~---~~~~~~~~~~~~~v~~~~~~-im~~~~~~~v~~~~ 277 (426)
+.++...+...+ ..+++.|. +|.++.+....+++..+... .+..|... .++.-+++ ......++.+...+
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~-~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~----~~GTnaig~al~~~~pv~v~g~E 134 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDE-TGCILSRNGDPQTLQQLSALGFNDGTYCAEG----IIGTNALSLAAISGQPVKTMGDQ 134 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcC-CceEEEEeCCHHHHHHHHHcCCccCCccchh----ccCcCHHHHHHhcCCceEEecHH
Confidence 344445555445 67788884 89999999988887776431 11222221 11111111 11122366666666
Q ss_pred cHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHH
Q 014353 278 PVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLR 311 (426)
Q Consensus 278 ~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~ 311 (426)
...+.+ ....+.+.||.|.+| +++|+|+..
T Consensus 135 H~~~~~---~~~~c~aaPI~d~~G-~liGvl~l~ 164 (638)
T PRK11388 135 HFKQAL---HNWAFCATPVFDSKG-RLTGTIALA 164 (638)
T ss_pred HHHHhc---cCceEEeeEEEcCCC-CEEEEEEEE
Confidence 555544 445678999999988 999999744
No 211
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=67.85 E-value=12 Score=39.99 Aligned_cols=101 Identities=15% Similarity=0.121 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccc--cccccccHHHHHHHHHHHhhhcCCCCCCCcCCc
Q 014353 279 VLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY--HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGM 356 (426)
Q Consensus 279 v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 356 (426)
+.+..+.+...+ ..++++|.+| .+++.....+++..+...+.. ..|....+. ...+.-.+.. ..+
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~~G-~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~G--Tnaig~al~~---------~~p 127 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDETG-CILSRNGDPQTLQQLSALGFNDGTYCAEGIIG--TNALSLAAIS---------GQP 127 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcCCc-eEEEEeCCHHHHHHHHHcCCccCCccchhccC--cCHHHHHHhc---------CCc
Confidence 334455555556 6888999998 999999989888765432211 111110000 0112222221 245
Q ss_pred eeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeH
Q 014353 357 VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITL 395 (426)
Q Consensus 357 ~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~ 395 (426)
+.|...+-..+.. ..-.+...||.|.+|+++|+|+.
T Consensus 128 v~v~g~EH~~~~~---~~~~c~aaPI~d~~G~liGvl~l 163 (638)
T PRK11388 128 VKTMGDQHFKQAL---HNWAFCATPVFDSKGRLTGTIAL 163 (638)
T ss_pred eEEecHHHHHHhc---cCceEEeeEEEcCCCCEEEEEEE
Confidence 6666555554443 34466789999999999999973
No 212
>PRK10026 arsenate reductase; Provisional
Probab=55.82 E-value=1.2e+02 Score=25.41 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=71.4
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
++..+...+...|++.+.++++..- ++| -+.-=.|..+|...+...+. .+.++ ++.++..-
T Consensus 6 iY~~p~Cst~RKA~~wL~~~gi~~~-~~d----~~~~ppt~~eL~~~l~~~g~-------~~~~l-------int~~~~y 66 (141)
T PRK10026 6 IYHNPACGTSRNTLEMIRNSGTEPT-IIH----YLETPPTRDELVKLIADMGI-------SVRAL-------LRKNVEPY 66 (141)
T ss_pred EEeCCCCHHHHHHHHHHHHCCCCcE-EEe----eeCCCcCHHHHHHHHHhCCC-------CHHHH-------HHcCCchH
Confidence 5666777889999999999987543 333 23344678888888754321 11222 22211110
Q ss_pred CCCcCCceeecCCCCHHHHHHHHHhCC--CcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCcc
Q 014353 350 SPLLSGMVTCSRNHTIKELIHLLDSKK--IHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYF 410 (426)
Q Consensus 350 ~~~~~~~~~v~~~~tl~~~~~~m~~~~--~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~~ 410 (426)
.-+ +. . ..+.+..++++.|.++. +.|=.|++++|.++|. ....++..+-....|++
T Consensus 67 r~L--~~-~-~~~ls~~e~l~ll~~~P~LIKRPIi~~~~~a~i~R-p~e~v~~~l~~~~~~~~ 124 (141)
T PRK10026 67 EEL--GL-A-EDKFTDDQLIDFMLQHPILINRPIVVTPLGTRLCR-PSEVVLEILPDAQKGAF 124 (141)
T ss_pred HHc--CC-C-ccCCCHHHHHHHHHhCccceeCcEEEcCCCeEEEC-CHHHHHHHhcccccccc
Confidence 000 11 1 14578999999999987 6677777777888888 55555555545555554
No 213
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=55.02 E-value=24 Score=36.46 Aligned_cols=127 Identities=14% Similarity=0.105 Sum_probs=81.3
Q ss_pred ccccchhhhccccccCCcEEecCCCCH-HHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcc
Q 014353 176 YKNTKVRDIAGSFRWAPFLALQKSNSF-LTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK 254 (426)
Q Consensus 176 ~~~~~v~~i~~~~~~~~~~~v~~~~~l-~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~ 254 (426)
+....++++|.+.. .......+..+ .+......+.|+.++||.+......+|.+-...++.++.... .+..
T Consensus 201 l~ek~~~evmtpi~--~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~------~~~~ 272 (498)
T KOG2118|consen 201 LTEKLVGEVMTPIE--DVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEV------PLEP 272 (498)
T ss_pred HHHHHHHHhccchh--hheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhcccc------cccc
Confidence 44456888888532 33344445544 366666778999999999854455555533333334332111 1223
Q ss_pred ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353 255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT 318 (426)
Q Consensus 255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~ 318 (426)
.++.+ .+.. .+..++.+++..+.++.+.+.+.|.+.|.+. . .-+++++..|+ ....
T Consensus 273 ~~v~~----~~~~-~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~-~-~~~~~~~l~~~-~~~~ 328 (498)
T KOG2118|consen 273 LPVSE----SALL-RLPLVPENMPLLDLLNEFQKGKSHMAVVRNG-H-VDIFVLTLEDL-EEVV 328 (498)
T ss_pred ccchh----hhcc-ccccCCCcccHHHHHHHHhhhhceeEEEecC-C-cceeeEeccch-hhhc
Confidence 44444 2222 3788899999999999999988888877774 3 57899999998 5544
No 214
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=48.92 E-value=43 Score=24.86 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 377 IHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 377 ~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
...+-|||++|..+|+++..+-++..-..
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~ 40 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEK 40 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHT
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHc
Confidence 35677889999999999999998877654
No 215
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=31.72 E-value=22 Score=20.70 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=9.3
Q ss_pred CCCchhhccccc
Q 014353 19 PRSPEAQLGMKV 30 (426)
Q Consensus 19 ~~~~~~~~~~~~ 30 (426)
|-+|++|.|||+
T Consensus 19 ptppaa~a~fsr 30 (32)
T PF07629_consen 19 PTPPAARAGFSR 30 (32)
T ss_pred CCChhhhhcccc
Confidence 456888999985
No 216
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=31.30 E-value=89 Score=23.15 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=22.5
Q ss_pred CCeeEEEeCCCCeEEEEEeHHHHHHHhhCCc
Q 014353 291 IGGIPVVEKGGNKAVGNISLRDIQFLLTAPE 321 (426)
Q Consensus 291 ~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~ 321 (426)
...+-|+|++| +.+|+++.++.+......+
T Consensus 12 ~~~VrlI~~~g-~~lGv~~~~eAl~~A~~~~ 41 (76)
T PF05198_consen 12 APEVRLIDEDG-EQLGVMSLREALRLAKEKG 41 (76)
T ss_dssp -SEEEEE-TTS--EEEEEEHHHHHHHHHHTT
T ss_pred CCEEEEECCCC-cEeceEEHHHHHHHHHHcC
Confidence 45678899998 9999999999999876543
No 217
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=29.33 E-value=55 Score=26.14 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=13.1
Q ss_pred EEEEEcCCCcEEEEEeH
Q 014353 379 RIYVVDFNGNLEGVITL 395 (426)
Q Consensus 379 ~l~Vvd~~~~liGvIT~ 395 (426)
..||.|.+|+++|+|+.
T Consensus 93 ~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 93 FAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEE-TTS-EEEEEEE
T ss_pred EEeeECCCCcEEEEEEE
Confidence 68999889999999974
No 218
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=27.20 E-value=1e+02 Score=32.43 Aligned_cols=149 Identities=8% Similarity=0.069 Sum_probs=80.1
Q ss_pred HHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHH
Q 014353 202 FLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQ 281 (426)
Q Consensus 202 l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~ 281 (426)
+.+-++.+.+.+ +.|+...+-.-+++...+-+...+... +.++ ....+..
T Consensus 29 I~~SW~RC~~~h-----~ldP~~~~~p~~Ls~~el~~~rE~~~~------------------------LL~i-A~~~L~~ 78 (606)
T COG3284 29 IAESWRRCLKLH-----VLDPELAKGPRVLSETELREARERAEA------------------------LLTI-AQPELDR 78 (606)
T ss_pred HHHHHHHHHHhc-----CCCccccCCCeecCHHHHHHHHHHHHH------------------------HHHH-hHHHHHH
Confidence 777777776544 244333344455666665554432211 1111 1223455
Q ss_pred HHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccc--cccccccHHHHHHHHHHHhhhcCCCCCCCcCCceee
Q 014353 282 AFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIY--HDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTC 359 (426)
Q Consensus 282 a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v 359 (426)
.++.+...++ ++.+.|.+| .+++..-..-...-..+-+.+ ..|.+-. ...-.++-.+. ...+++|
T Consensus 79 L~~~v~~~~~-~vLLtD~~G-ViL~~~G~~~~~~~~rk~gl~~Ga~WSE~~--~GTNgIGTcLv---------e~~aVtI 145 (606)
T COG3284 79 LFQAVAGSGC-CVLLTDADG-VILERRGDPRDDEDFRKAGLWLGAVWSEPR--EGTNGIGTCLV---------EGEAVTI 145 (606)
T ss_pred HHHHhcCCCe-EEEEEcCce-eEEEeecChhhhhhhhhhcccccccccccc--ccccchhhhhc---------cCcceEE
Confidence 5666665554 788889988 888776552222221111111 0111000 00111222222 2367888
Q ss_pred cCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHH
Q 014353 360 SRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLR 396 (426)
Q Consensus 360 ~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~ 396 (426)
..++-+..+. ..-.+...|+.|.+|+++||+..+
T Consensus 146 ~~~qHF~~~~---~~lsCsAaPI~D~qG~L~gVLDIS 179 (606)
T COG3284 146 HGDQHFIQAH---HGLSCSAAPIFDEQGELVGVLDIS 179 (606)
T ss_pred ehhhhHhhcc---cCceeeeeccccCCCcEEEEEEec
Confidence 8887776654 444577899999999999999877
No 219
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=21.20 E-value=1.5e+02 Score=22.83 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=22.8
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCcEEEEEeHH
Q 014353 366 KELIHLLDSKKIHRIYVVDFNGNLEGVITLR 396 (426)
Q Consensus 366 ~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~ 396 (426)
.+.++.+...+-+.++|++.+|+++|.+...
T Consensus 32 ~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~ 62 (117)
T PF13673_consen 32 PEDLEEYLEEGSHTIFVAEEGGEIVGFAWLE 62 (117)
T ss_dssp HHHHHHHHCTCCCEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHhcCCEEEEEEECCEEEEEEEEc
Confidence 3444555556558888998899999999853
No 220
>PF14044 NETI: NETI protein
Probab=21.17 E-value=1.3e+02 Score=20.92 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=19.9
Q ss_pred eEeCCCCcHHHHHHHHHhcCCCeeEE
Q 014353 271 VKVYEDEPVLQAFKLMRRKKIGGIPV 296 (426)
Q Consensus 271 ~~v~~~~~v~~a~~~m~~~~~~~lpV 296 (426)
+.|.++.|+.+++..|.+.|+ .||
T Consensus 2 FeV~enETI~~CL~RM~~eGY--~Pv 25 (57)
T PF14044_consen 2 FEVEENETISDCLARMKKEGY--MPV 25 (57)
T ss_pred eeccCCCcHHHHHHHHHHcCC--Cce
Confidence 356789999999999999987 444
No 221
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=21.13 E-value=69 Score=25.57 Aligned_cols=18 Identities=44% Similarity=0.663 Sum_probs=13.2
Q ss_pred ccceeeecCCCCCcccccceEEEeeh
Q 014353 88 LSAPVVDVDAPEDASWIDRYIGIVEF 113 (426)
Q Consensus 88 ~slPVvd~~~~~~~~~~~~~vGivt~ 113 (426)
-..||+|.+ |+++|+|..
T Consensus 92 ~~~PV~d~~--------g~viG~V~V 109 (116)
T PF14827_consen 92 AFAPVYDSD--------GKVIGVVSV 109 (116)
T ss_dssp EEEEEE-TT--------S-EEEEEEE
T ss_pred EEEeeECCC--------CcEEEEEEE
Confidence 368999888 999999864
No 222
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=20.54 E-value=1.8e+02 Score=21.07 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=17.5
Q ss_pred EEEEEcCCCcEEEEEe----HHHHHHHHHh
Q 014353 379 RIYVVDFNGNLEGVIT----LRDIISRLVH 404 (426)
Q Consensus 379 ~l~Vvd~~~~liGvIT----~~Dll~~l~~ 404 (426)
..||.+.+|+++|++. ...|-+.+..
T Consensus 18 s~pi~~~~g~~~Gvv~~di~l~~l~~~i~~ 47 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVGIDISLDQLSEIISN 47 (81)
T ss_dssp EEEEEETTTEEEEEEEEEEEHHHHHHHHTT
T ss_pred EEEEECCCCCEEEEEEEEeccceeeeEEEe
Confidence 4788887889888854 4555554433
Done!