Query 014353
Match_columns 426
No_of_seqs 283 out of 3464
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 10:02:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kh5_A Protein MJ1225; AMPK, A 100.0 2.8E-34 9.5E-39 271.2 23.7 269 62-402 10-279 (280)
2 3t4n_C Nuclear protein SNF4; C 100.0 4.7E-34 1.6E-38 275.8 25.3 288 47-405 23-321 (323)
3 3ddj_A CBS domain-containing p 100.0 1.4E-33 4.7E-38 269.1 19.4 273 48-405 14-286 (296)
4 2v8q_E 5'-AMP-activated protei 100.0 2.3E-32 7.9E-37 264.8 25.1 300 45-406 26-325 (330)
5 2qrd_G Protein C1556.08C; AMPK 100.0 3E-31 1E-35 257.3 29.2 295 47-408 15-319 (334)
6 2yzq_A Putative uncharacterize 100.0 6.5E-33 2.2E-37 262.3 14.0 262 62-405 7-280 (282)
7 3ddj_A CBS domain-containing p 99.9 9.7E-24 3.3E-28 200.9 16.1 193 53-318 92-284 (296)
8 3kh5_A Protein MJ1225; AMPK, A 99.9 1.1E-22 3.7E-27 191.6 21.8 184 192-403 13-204 (280)
9 3t4n_C Nuclear protein SNF4; C 99.9 2.1E-22 7.1E-27 194.0 19.3 193 62-319 120-320 (323)
10 2yzq_A Putative uncharacterize 99.9 1.6E-22 5.4E-27 190.9 16.3 201 47-318 53-278 (282)
11 2v8q_E 5'-AMP-activated protei 99.9 1E-20 3.4E-25 182.8 17.4 190 62-319 124-323 (330)
12 2qrd_G Protein C1556.08C; AMPK 99.9 2.3E-20 7.8E-25 180.6 19.7 186 66-320 119-316 (334)
13 4esy_A CBS domain containing m 99.8 2.4E-20 8.2E-25 162.8 9.5 145 253-406 16-164 (170)
14 3lhh_A CBS domain protein; str 99.8 6.9E-19 2.4E-23 153.8 14.4 130 252-410 39-170 (172)
15 4esy_A CBS domain containing m 99.8 1E-19 3.5E-24 158.7 9.0 152 46-241 10-161 (170)
16 3lv9_A Putative transporter; C 99.8 1.3E-18 4.3E-23 148.1 14.3 126 252-406 20-147 (148)
17 3k6e_A CBS domain protein; str 99.8 5.4E-19 1.9E-23 152.0 11.8 132 254-408 14-146 (156)
18 3hf7_A Uncharacterized CBS-dom 99.8 2.2E-18 7.5E-23 143.4 13.2 121 264-406 7-129 (130)
19 3jtf_A Magnesium and cobalt ef 99.8 2.6E-18 9E-23 142.6 11.8 123 254-406 4-128 (129)
20 3i8n_A Uncharacterized protein 99.8 2.1E-18 7.2E-23 143.4 11.1 124 254-405 5-130 (130)
21 3kpb_A Uncharacterized protein 99.8 7.7E-18 2.6E-22 138.0 12.8 116 264-405 6-121 (122)
22 3lfr_A Putative metal ION tran 99.8 2.4E-18 8.3E-23 144.2 9.6 129 255-410 3-133 (136)
23 3oco_A Hemolysin-like protein 99.7 4.7E-18 1.6E-22 145.4 10.7 130 252-410 17-149 (153)
24 3nqr_A Magnesium and cobalt ef 99.7 2E-18 7E-23 142.8 8.1 123 255-405 3-127 (127)
25 3ocm_A Putative membrane prote 99.7 1.2E-17 4.1E-22 146.1 12.9 130 252-411 33-164 (173)
26 3l2b_A Probable manganase-depe 99.7 8.6E-18 2.9E-22 155.4 11.7 226 53-317 6-242 (245)
27 3gby_A Uncharacterized protein 99.7 2.3E-17 7.8E-22 136.6 12.8 124 254-405 4-127 (128)
28 2ef7_A Hypothetical protein ST 99.7 5.1E-17 1.8E-21 135.2 14.6 126 254-407 3-128 (133)
29 2yzi_A Hypothetical protein PH 99.7 6.6E-17 2.3E-21 135.5 15.3 127 254-408 6-133 (138)
30 3l2b_A Probable manganase-depe 99.7 3.8E-17 1.3E-21 151.0 14.2 206 178-403 6-243 (245)
31 3lhh_A CBS domain protein; str 99.7 5.6E-17 1.9E-21 141.6 13.9 148 27-242 6-164 (172)
32 2p9m_A Hypothetical protein MJ 99.7 1.2E-16 4.2E-21 133.7 15.1 125 254-405 7-137 (138)
33 3kxr_A Magnesium transporter, 99.7 4.9E-17 1.7E-21 146.1 13.2 125 252-408 51-178 (205)
34 3lqn_A CBS domain protein; csg 99.7 5.6E-17 1.9E-21 138.0 12.7 134 252-407 12-146 (150)
35 3fv6_A YQZB protein; CBS domai 99.7 9.6E-17 3.3E-21 138.2 14.3 125 254-405 16-145 (159)
36 3fhm_A Uncharacterized protein 99.7 3.9E-17 1.3E-21 141.5 11.6 132 252-408 21-154 (165)
37 4gqw_A CBS domain-containing p 99.7 3.6E-17 1.2E-21 139.1 10.7 138 255-406 5-145 (152)
38 2nyc_A Nuclear protein SNF4; b 99.7 1.4E-16 4.7E-21 134.3 14.1 137 254-406 7-143 (144)
39 3lv9_A Putative transporter; C 99.7 1.4E-16 4.9E-21 135.3 14.3 124 51-242 20-145 (148)
40 1pbj_A Hypothetical protein; s 99.7 1.2E-16 4.1E-21 131.3 13.0 118 264-405 6-123 (125)
41 3ctu_A CBS domain protein; str 99.7 4.5E-17 1.6E-21 139.6 10.5 136 252-410 12-148 (156)
42 3i8n_A Uncharacterized protein 99.7 1.1E-16 3.8E-21 132.8 12.5 124 51-241 3-128 (130)
43 2rc3_A CBS domain; in SITU pro 99.7 1.9E-16 6.6E-21 132.2 13.9 124 256-406 7-133 (135)
44 3kpb_A Uncharacterized protein 99.7 2.5E-16 8.5E-21 128.9 13.7 119 180-319 2-120 (122)
45 3k6e_A CBS domain protein; str 99.7 9.6E-17 3.3E-21 137.8 11.5 127 55-242 16-142 (156)
46 1y5h_A Hypothetical protein RV 99.7 7.5E-17 2.6E-21 134.2 10.0 124 255-405 8-132 (133)
47 2rih_A Conserved protein with 99.7 3.7E-16 1.3E-20 131.5 14.3 123 255-404 5-128 (141)
48 2emq_A Hypothetical conserved 99.7 4E-16 1.4E-20 133.6 14.7 134 253-408 9-143 (157)
49 3k2v_A Putative D-arabinose 5- 99.7 1.2E-16 4.2E-21 135.9 11.3 145 22-238 2-148 (149)
50 3oi8_A Uncharacterized protein 99.7 9.8E-17 3.4E-21 137.7 10.8 120 252-399 35-155 (156)
51 1vr9_A CBS domain protein/ACT 99.7 1.6E-16 5.5E-21 143.7 12.7 163 53-301 12-174 (213)
52 2ef7_A Hypothetical protein ST 99.7 3.6E-16 1.2E-20 130.1 13.8 125 52-243 2-126 (133)
53 3k2v_A Putative D-arabinose 5- 99.7 2.5E-16 8.6E-21 133.9 12.6 120 255-400 28-148 (149)
54 2pfi_A Chloride channel protei 99.7 4.1E-16 1.4E-20 134.4 14.0 134 254-405 12-148 (164)
55 2o16_A Acetoin utilization pro 99.7 1.9E-16 6.5E-21 136.5 11.8 131 255-404 5-135 (160)
56 2uv4_A 5'-AMP-activated protei 99.7 2.3E-16 7.9E-21 134.6 12.1 122 269-404 30-151 (152)
57 3hf7_A Uncharacterized CBS-dom 99.7 3.4E-16 1.2E-20 130.0 12.2 125 179-318 2-126 (130)
58 1o50_A CBS domain-containing p 99.7 5.7E-16 2E-20 132.9 14.0 142 252-406 13-155 (157)
59 3fv6_A YQZB protein; CBS domai 99.7 7.1E-16 2.4E-20 132.7 14.3 134 46-243 9-145 (159)
60 3sl7_A CBS domain-containing p 99.7 6.8E-17 2.3E-21 141.6 7.8 143 256-405 5-157 (180)
61 3jtf_A Magnesium and cobalt ef 99.7 3.2E-16 1.1E-20 129.9 11.3 123 177-318 3-125 (129)
62 2p9m_A Hypothetical protein MJ 99.7 3.9E-16 1.3E-20 130.6 11.9 127 50-242 4-136 (138)
63 1vr9_A CBS domain protein/ACT 99.7 2.7E-16 9.2E-21 142.2 11.7 163 178-387 12-174 (213)
64 2o16_A Acetoin utilization pro 99.7 5.1E-16 1.8E-20 133.7 12.6 132 53-242 4-135 (160)
65 3gby_A Uncharacterized protein 99.7 4.3E-16 1.5E-20 128.9 11.4 122 178-318 4-125 (128)
66 1pvm_A Conserved hypothetical 99.7 6.7E-16 2.3E-20 136.2 13.1 125 255-404 9-133 (184)
67 1pbj_A Hypothetical protein; s 99.7 1.8E-15 6E-20 124.3 14.8 121 180-319 2-122 (125)
68 3oco_A Hemolysin-like protein 99.7 2.1E-16 7.2E-21 135.1 9.5 124 51-242 17-143 (153)
69 2rih_A Conserved protein with 99.7 1.9E-15 6.3E-20 127.2 14.9 120 179-317 5-126 (141)
70 3nqr_A Magnesium and cobalt ef 99.7 3.3E-16 1.1E-20 129.4 10.0 122 179-318 3-125 (127)
71 2d4z_A Chloride channel protei 99.7 1.8E-15 6E-20 139.6 15.5 145 254-404 12-246 (250)
72 2uv4_A 5'-AMP-activated protei 99.6 1.4E-15 4.6E-20 129.8 13.4 131 45-241 14-150 (152)
73 1yav_A Hypothetical protein BS 99.6 4.3E-16 1.5E-20 133.9 10.2 133 254-408 13-146 (159)
74 3lfr_A Putative metal ION tran 99.6 4.8E-16 1.6E-20 130.2 10.2 125 178-318 2-126 (136)
75 4gqw_A CBS domain-containing p 99.6 2.5E-16 8.4E-21 133.9 8.2 140 52-243 3-144 (152)
76 3lqn_A CBS domain protein; csg 99.6 1.5E-15 5.2E-20 129.0 13.0 132 175-318 11-142 (150)
77 2yzi_A Hypothetical protein PH 99.6 4.6E-15 1.6E-19 124.1 15.5 125 176-319 4-129 (138)
78 3oi8_A Uncharacterized protein 99.6 2E-16 7E-21 135.7 7.2 143 27-237 2-155 (156)
79 3fhm_A Uncharacterized protein 99.6 4.7E-15 1.6E-19 128.3 15.6 132 175-320 20-151 (165)
80 2j9l_A Chloride channel protei 99.6 1.5E-15 5.1E-20 133.7 12.6 148 254-407 10-168 (185)
81 4fry_A Putative signal-transdu 99.6 1.1E-15 3.8E-20 131.0 10.9 120 269-410 22-141 (157)
82 2yvy_A MGTE, Mg2+ transporter 99.6 3.3E-15 1.1E-19 140.7 14.7 127 252-410 132-263 (278)
83 3ocm_A Putative membrane prote 99.6 2.8E-15 9.5E-20 131.0 13.2 133 41-242 19-157 (173)
84 2rc3_A CBS domain; in SITU pro 99.6 6.7E-15 2.3E-19 122.7 14.8 122 180-319 7-131 (135)
85 3ctu_A CBS domain protein; str 99.6 1.1E-15 3.9E-20 130.8 10.1 130 51-243 12-143 (156)
86 1y5h_A Hypothetical protein RV 99.6 1.5E-15 5.2E-20 126.2 10.5 123 178-318 7-130 (133)
87 1pvm_A Conserved hypothetical 99.6 2.4E-15 8.3E-20 132.6 11.7 125 54-242 9-133 (184)
88 2pfi_A Chloride channel protei 99.6 2.8E-15 9.7E-20 129.2 11.6 135 51-243 10-148 (164)
89 2emq_A Hypothetical conserved 99.6 3.8E-15 1.3E-19 127.5 11.7 132 50-243 7-140 (157)
90 1o50_A CBS domain-containing p 99.6 7.9E-15 2.7E-19 125.7 13.5 132 174-318 11-152 (157)
91 3sl7_A CBS domain-containing p 99.6 1.8E-15 6.1E-20 132.5 9.6 152 54-243 4-157 (180)
92 2nyc_A Nuclear protein SNF4; b 99.6 1.1E-14 3.6E-19 122.6 13.4 126 178-318 7-140 (144)
93 2oux_A Magnesium transporter; 99.6 2.4E-15 8.2E-20 142.2 10.2 123 252-406 134-261 (286)
94 3kxr_A Magnesium transporter, 99.6 1.2E-14 4.1E-19 130.5 13.1 122 175-319 50-174 (205)
95 4fry_A Putative signal-transdu 99.6 2.1E-14 7E-19 123.0 13.3 128 179-320 7-136 (157)
96 2j9l_A Chloride channel protei 99.6 2.5E-14 8.6E-19 125.8 13.9 135 176-318 8-164 (185)
97 1yav_A Hypothetical protein BS 99.6 1.5E-14 5.2E-19 124.2 11.8 131 176-318 11-141 (159)
98 2d4z_A Chloride channel protei 99.5 7.7E-14 2.6E-18 128.6 14.0 135 176-318 10-245 (250)
99 2zy9_A Mg2+ transporter MGTE; 99.5 7.7E-14 2.6E-18 140.7 12.7 121 253-405 153-278 (473)
100 3org_A CMCLC; transporter, tra 99.5 6.9E-15 2.4E-19 153.6 4.8 146 254-405 452-626 (632)
101 3pc3_A CG1753, isoform A; CBS, 99.5 5.7E-14 1.9E-18 143.9 11.0 127 253-407 382-514 (527)
102 2oux_A Magnesium transporter; 99.5 1.1E-13 3.7E-18 130.8 11.5 121 175-318 133-258 (286)
103 3pc3_A CG1753, isoform A; CBS, 99.5 1.2E-13 4.2E-18 141.4 11.7 127 51-243 381-512 (527)
104 2yvy_A MGTE, Mg2+ transporter 99.5 3.3E-13 1.1E-17 126.9 13.4 122 175-319 131-257 (278)
105 3usb_A Inosine-5'-monophosphat 99.4 8.3E-13 2.9E-17 134.0 10.6 114 264-404 118-234 (511)
106 2zy9_A Mg2+ transporter MGTE; 99.4 2E-12 7E-17 130.3 13.0 121 51-242 152-277 (473)
107 1zfj_A Inosine monophosphate d 99.4 4.5E-12 1.6E-16 128.7 15.1 114 264-404 95-211 (491)
108 3usb_A Inosine-5'-monophosphat 99.4 4.9E-12 1.7E-16 128.3 14.1 154 192-387 122-279 (511)
109 4fxs_A Inosine-5'-monophosphat 99.3 5.5E-13 1.9E-17 134.8 5.2 113 264-403 94-208 (496)
110 3org_A CMCLC; transporter, tra 99.3 9.2E-13 3.2E-17 137.5 5.7 130 177-318 451-624 (632)
111 1me8_A Inosine-5'-monophosphat 99.3 2.5E-13 8.5E-18 137.9 0.5 116 265-406 103-223 (503)
112 4af0_A Inosine-5'-monophosphat 99.3 5.1E-13 1.8E-17 132.2 0.0 107 270-403 148-257 (556)
113 4avf_A Inosine-5'-monophosphat 99.3 5.3E-13 1.8E-17 134.8 -0.3 112 264-403 93-206 (490)
114 1vrd_A Inosine-5'-monophosphat 99.2 6E-13 2.1E-17 135.2 -0.0 115 264-405 100-216 (494)
115 1me8_A Inosine-5'-monophosphat 99.2 1.9E-12 6.6E-17 131.4 2.8 115 185-319 103-221 (503)
116 4fxs_A Inosine-5'-monophosphat 99.2 3.1E-11 1E-15 122.0 7.3 118 181-319 91-209 (496)
117 1zfj_A Inosine monophosphate d 99.1 2.5E-10 8.4E-15 115.9 12.2 119 181-319 92-211 (491)
118 3ghd_A A cystathionine beta-sy 99.1 1E-10 3.6E-15 85.4 6.5 48 65-121 1-48 (70)
119 4avf_A Inosine-5'-monophosphat 99.1 3.9E-11 1.3E-15 121.2 4.5 118 180-319 89-207 (490)
120 4af0_A Inosine-5'-monophosphat 99.1 9.9E-12 3.4E-16 123.1 0.2 113 62-240 144-256 (556)
121 1vrd_A Inosine-5'-monophosphat 99.1 5.3E-11 1.8E-15 120.9 5.3 120 180-320 96-216 (494)
122 1jcn_A Inosine monophosphate d 99.1 2.6E-12 9E-17 131.1 -4.8 115 264-403 113-232 (514)
123 2cu0_A Inosine-5'-monophosphat 99.1 1.6E-11 5.5E-16 124.3 0.0 110 264-403 98-207 (486)
124 2cu0_A Inosine-5'-monophosphat 98.9 1.8E-10 6.1E-15 116.6 2.7 163 182-394 96-258 (486)
125 1jcn_A Inosine monophosphate d 98.9 7.4E-11 2.5E-15 120.4 -2.3 123 180-320 109-234 (514)
126 3ghd_A A cystathionine beta-sy 98.8 1.9E-08 6.5E-13 73.3 8.0 52 356-408 2-53 (70)
127 3fio_A A cystathionine beta-sy 98.7 2.6E-08 9E-13 72.3 6.5 48 65-121 1-48 (70)
128 3fio_A A cystathionine beta-sy 98.6 1.4E-07 4.9E-12 68.3 8.0 50 355-405 1-50 (70)
129 1tif_A IF3-N, translation init 50.6 31 0.0011 24.7 5.1 29 377-405 13-41 (78)
130 1tif_A IF3-N, translation init 30.5 68 0.0023 22.9 4.3 30 291-321 13-42 (78)
131 1svj_A Potassium-transporting 21.9 29 0.001 28.4 1.2 35 365-400 121-155 (156)
132 1p0z_A Sensor kinase CITA; tra 21.8 62 0.0021 25.1 3.1 27 278-305 36-63 (131)
133 3by8_A Sensor protein DCUS; hi 21.5 62 0.0021 25.6 3.1 25 277-301 41-66 (142)
No 1
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=100.00 E-value=2.8e-34 Score=271.21 Aligned_cols=269 Identities=18% Similarity=0.317 Sum_probs=210.8
Q ss_pred CCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHh
Q 014353 62 PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAA 141 (426)
Q Consensus 62 ~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~ 141 (426)
|+++++++++++|+.+|+++|.+++++++||+|++. ++++|++|..||+.++.....
T Consensus 10 ~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~-------~~~~Givt~~di~~~~~~~~~---------------- 66 (280)
T 3kh5_A 10 QNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGN-------NKVVGIITSMDIVDFMGGGSK---------------- 66 (280)
T ss_dssp CCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTT-------CBEEEEEEHHHHHHHTTTSGG----------------
T ss_pred cCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCC-------CeEEEEEEHHHHHHHhcccch----------------
Confidence 677999999999999999999999999999999732 899999999999986532110
Q ss_pred hhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEe
Q 014353 142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVD 221 (426)
Q Consensus 142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd 221 (426)
.++ +.... .+.++ .....+++++|.+ +++++.+++++.+++..|.+++++++||+|
T Consensus 67 -~~~--------~~~~~----~~~~~-------~~~~~~v~~im~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd 122 (280)
T 3kh5_A 67 -YNL--------IREKH----ERNFL-------AAINEPVREIMEE----NVITLKENADIDEAIETFLTKNVGGAPIVN 122 (280)
T ss_dssp -GHH--------HHTTS----TTCHH-------HHTTSBGGGTSBC----SCCCEETTCBHHHHHHHHHHTTCSEEEEEC
T ss_pred -hhh--------hhhcc----ccchh-------HHhhhhHHHhcCC----CCEEECCCCCHHHHHHHHHhCCCCEEEEEc
Confidence 000 00000 00011 1224689999987 888999999999999999999999999999
Q ss_pred CCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCC
Q 014353 222 LGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGG 301 (426)
Q Consensus 222 ~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~ 301 (426)
++++++|++|..|+++.+...... ..++.+ +|.++ ++++.+++++.++++.|.+++++++||+ ++|
T Consensus 123 -~~~~~~Givt~~dl~~~~~~~~~~-------~~~v~~----~m~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~ 188 (280)
T 3kh5_A 123 -DENQLISLITERDVIRALLDKIDE-------NEVIDD----YITRD-VIVATPGERLKDVARTMVRNGFRRLPVV-SEG 188 (280)
T ss_dssp -TTCBEEEEEEHHHHHHHHGGGSCT-------TCBSGG----GCBCS-CCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETT
T ss_pred -CCCEEEEEEEHHHHHHHHhhcCCC-------CCCHHH----HhCCC-CeEECCCCcHHHHHHHHHHcCCCEEEEE-ECC
Confidence 479999999999999987644221 236676 78764 8999999999999999999999999999 456
Q ss_pred CeEEEEEeHHHHHHHhhCCccccccccccHHH-HHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEE
Q 014353 302 NKAVGNISLRDIQFLLTAPEIYHDYRSITAKN-FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRI 380 (426)
Q Consensus 302 ~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l 380 (426)
+++|+||.+|+++.+..+..+..+......+ ...++.+ +|.+++.+|++++++.+|++.|.+++++++
T Consensus 189 -~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~----------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l 257 (280)
T 3kh5_A 189 -RLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEE----------IMKRDVITAKEGDKLKKIAEIMVTNDIGAL 257 (280)
T ss_dssp -EEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHHHCBHHH----------HSBSSCCCBCTTCBHHHHHHHHHHHTCCEE
T ss_pred -EEEEEEEHHHHHHHHhhhhhhhhhcccchhhhhCCcHHH----------HhcCCCEEECCCCCHHHHHHHHHHCCCCEE
Confidence 9999999999999875432221111111011 1223444 445589999999999999999999999999
Q ss_pred EEEcCCCcEEEEEeHHHHHHHH
Q 014353 381 YVVDFNGNLEGVITLRDIISRL 402 (426)
Q Consensus 381 ~Vvd~~~~liGvIT~~Dll~~l 402 (426)
||+|++|+++|+||.+||++++
T Consensus 258 ~Vvd~~g~~~Givt~~dil~~l 279 (280)
T 3kh5_A 258 PVVDENLRIKGIITEKDVLKYF 279 (280)
T ss_dssp EEECTTCBEEEEEEHHHHGGGG
T ss_pred EEECCCCeEEEEEeHHHHHHhh
Confidence 9999989999999999999875
No 2
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=100.00 E-value=4.7e-34 Score=275.76 Aligned_cols=288 Identities=18% Similarity=0.356 Sum_probs=221.1
Q ss_pred HhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCC
Q 014353 47 LNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEP 126 (426)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~ 126 (426)
+...+....|+++.+.+.++++++.++|+.+|+++|.+++++++||+|++. ++++|++|..|++.++......
T Consensus 23 i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~-------~~lvGilt~~Dl~~~l~~~~~~ 95 (323)
T 3t4n_C 23 IRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKT-------SRFAGLLTTTDFINVIQYYFSN 95 (323)
T ss_dssp HHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTT-------TEEEEEECHHHHHHHHHHHHHC
T ss_pred HHHHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCC-------CeEEEEEEHHHHHHHHHHHHcC
Confidence 445556777888766677999999999999999999999999999999874 6999999999999887643211
Q ss_pred CCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhh------hccccccCCcEEecCCC
Q 014353 127 PSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRD------IAGSFRWAPFLALQKSN 200 (426)
Q Consensus 127 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~------i~~~~~~~~~~~v~~~~ 200 (426)
.. .... ........+.+ +|.. +++++.+++
T Consensus 96 ~~-------------------------------------~~~~---l~~~~~~~v~~i~~~~~~~~~----~~v~v~~~~ 131 (323)
T 3t4n_C 96 PD-------------------------------------KFEL---VDKLQLDGLKDIERALGVDQL----DTASIHPSR 131 (323)
T ss_dssp GG-------------------------------------GGGG---GGGCBHHHHHHHHHHTTC--------CCCBCTTS
T ss_pred cc-------------------------------------hhHH---HHHHHHHHHHHHHHHhCCCCC----CceEeCCCC
Confidence 00 0000 00111122333 3344 788999999
Q ss_pred CHHHHHHHHhhcCCcEeEEEeCCCCe-----EEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCC
Q 014353 201 SFLTMLLLLSKYKMKSIPVVDLGEGT-----IDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYE 275 (426)
Q Consensus 201 ~l~~~l~~l~~~~~~~ipVvd~~~~~-----l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~ 275 (426)
++.+++..|.+++++++||+|. ++. ++|++|..|+++++...... ..+...++.+++. .|..+ ++++.+
T Consensus 132 ~l~~a~~~m~~~~~~~lpVvd~-~~~~~~~~l~Givt~~di~~~l~~~~~~---~~~~~~~v~~~~~-~m~~~-~~~v~~ 205 (323)
T 3t4n_C 132 PLFEACLKMLESRSGRIPLIDQ-DEETHREIVVSVLTQYRILKFVALNCRE---THFLKIPIGDLNI-ITQDN-MKSCQM 205 (323)
T ss_dssp BHHHHHHHHHHHTCSEEEEEEE-CTTTCCEEEEEEEEHHHHHHHHHHHCGG---GGGCCSBGGGTTC-SBCTT-CCCBCT
T ss_pred cHHHHHHHHHhCCeeEEEEEec-CCCCCccceEEEecHHHHHHHHHhcCCc---hhhhhCcHHHcCC-CCCCC-cEEECC
Confidence 9999999999999999999994 453 99999999999998644221 2233457777321 26654 999999
Q ss_pred CCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCcCC
Q 014353 276 DEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSG 355 (426)
Q Consensus 276 ~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 355 (426)
++++.++++.|.+++++++||+|++| +++|+||.+|+++++..+. + ..+..++.++|.... ...++
T Consensus 206 ~~~~~~~~~~m~~~~~~~~pVvd~~~-~~~Giit~~dl~~~~~~~~-~--------~~~~~~v~~~m~~~~----~~~~~ 271 (323)
T 3t4n_C 206 TTPVIDVIQMLTQGRVSSVPIIDENG-YLINVYEAYDVLGLIKGGI-Y--------NDLSLSVGEALMRRS----DDFEG 271 (323)
T ss_dssp TSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEETTHHHHHHHTTH-H--------HHTTSBHHHHGGGSC----TTCCC
T ss_pred CCcHHHHHHHHHHcCCCEEEEECCCC-eEEEEEeHHHHHHHHhhch-h--------hhccCCHHHHHhhcc----ccCCC
Confidence 99999999999999999999999988 9999999999999875431 1 112234566665410 00126
Q ss_pred ceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 356 MVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 356 ~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
+++|++++++.+++++|.+++++++||+|++|+++|+||.+||+++++++
T Consensus 272 ~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~~~ 321 (323)
T 3t4n_C 272 VYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLG 321 (323)
T ss_dssp CEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred CEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999876
No 3
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=100.00 E-value=1.4e-33 Score=269.12 Aligned_cols=273 Identities=17% Similarity=0.272 Sum_probs=220.3
Q ss_pred hhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCC
Q 014353 48 NACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPP 127 (426)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~ 127 (426)
.+.+...+++++ |+++++++++++|+.+|+++|.+++++++||+| + +++|++|..||+.++.......
T Consensus 14 ~~~~~~~~V~di--m~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-~---------~l~GivT~~Di~~~~~~~~~~~ 81 (296)
T 3ddj_A 14 NLYFQGMNIETL--MIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN-E---------KIEGLLTTRDLLSTVESYCKDS 81 (296)
T ss_dssp CCTTCCSSGGGT--CEESCCEECTTSBHHHHHHHTTGGGCCEEEEES-S---------SEEEEEEHHHHHGGGTTCC---
T ss_pred hhhhcccCHHHh--ccCCCcEECCCccHHHHHHHHHHCCCceEEEEC-C---------eEEEEEeHHHHHHHhccccccc
Confidence 455678899998 989999999999999999999999999999998 4 7999999999987654221000
Q ss_pred CCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHH
Q 014353 128 SPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLL 207 (426)
Q Consensus 128 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~ 207 (426)
...+.++ .....+++++|.+ +++++.+++++.+++.
T Consensus 82 ---------------------------------~~~~~~~-------~~~~~~v~~im~~----~~~~v~~~~~~~~a~~ 117 (296)
T 3ddj_A 82 ---------------------------------CSQGDLY-------HISTTPIIDYMTP----NPVTVYNTSDEFTAIN 117 (296)
T ss_dssp ---------------------------------CCHHHHH-------HHHTSBGGGTSEE----SCCCEETTSCHHHHHH
T ss_pred ---------------------------------ccchhhH-------HHhcccHHHhccC----CCEEEcCCCCHHHHHH
Confidence 0000111 1235679999987 8889999999999999
Q ss_pred HHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHH
Q 014353 208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMR 287 (426)
Q Consensus 208 ~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~ 287 (426)
.|.+++++++||+| ++++++|++|..|++..+.... ...++.+ +|.++ ++++.+++++.++++.|.
T Consensus 118 ~m~~~~~~~lpVvd-~~~~lvGivt~~dl~~~~~~~~--------~~~~v~~----~m~~~-~~~v~~~~~l~~~~~~m~ 183 (296)
T 3ddj_A 118 IMVTRNFGSLPVVD-INDKPVGIVTEREFLLLYKDLD--------EIFPVKV----FMSTK-VQTIYKEVRLDQAVKLML 183 (296)
T ss_dssp HHHHHTCSEEEEEC-TTSCEEEEEEHHHHGGGGGGSC--------CCCBHHH----HSBCS-CCCEETTSBHHHHHHHHH
T ss_pred HHHHcCCCEEEEEc-CCCcEEEEEeHHHHHHhhhccc--------ccccHHH----hhcCC-CeEECCCCCHHHHHHHHH
Confidence 99999999999999 4799999999999988764332 1346777 77764 899999999999999999
Q ss_pred hcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHH
Q 014353 288 RKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKE 367 (426)
Q Consensus 288 ~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~ 367 (426)
+++++++||+|++| +++|+||.+|+++.+... +..+.. ......++. ++|.+++.+|.+++++.+
T Consensus 184 ~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~--~~~~~~--~~~~~~~v~----------~~m~~~~~~v~~~~~l~~ 248 (296)
T 3ddj_A 184 RRGFRRLPVIDDDN-KVVGIVTVVNAIKQLAKA--VDKLDP--DYFYGKVVK----------DVMVTNLVTIDELASVNR 248 (296)
T ss_dssp HHTCSEEEEECTTS-CEEEEEEHHHHHHHHHHH--HHHTCT--HHHHTCBHH----------HHSBCCCCBCCTTSBHHH
T ss_pred HcCCCEEEEEcCCC-EEEEEEEHHHHHHHHHHH--HhhcCh--hhhcCcCHH----------HHhCCCCeEECCCCcHHH
Confidence 99999999999888 999999999999886421 110000 000112233 445558999999999999
Q ss_pred HHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 368 LIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 368 ~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
|+++|.+++++++||+|++|+++|+||.+||++++.++
T Consensus 249 a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~ 286 (296)
T 3ddj_A 249 AAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHI 286 (296)
T ss_dssp HHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999865
No 4
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=100.00 E-value=2.3e-32 Score=264.78 Aligned_cols=300 Identities=19% Similarity=0.308 Sum_probs=229.1
Q ss_pred HHHhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhc
Q 014353 45 EKLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQS 124 (426)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~ 124 (426)
+.++..+...+++++...+++++++++++|+.+|+++|.+++++++||+|++. ++++|+|+..|++..+....
T Consensus 26 ~~~~~~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~-------~~~vGivt~~Dll~~l~~~~ 98 (330)
T 2v8q_E 26 SVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKK-------QSFVGMLTITDFINILHRYY 98 (330)
T ss_dssp CHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTT-------TEEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCC-------CeEEEEEEHHHHHHHHHHHH
Confidence 34888899999999933389999999999999999999999999999999874 68999999999998765421
Q ss_pred CCCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHH
Q 014353 125 EPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLT 204 (426)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~ 204 (426)
.... ... ..+. ...... + ...++++|.. +++++.+++++.+
T Consensus 99 ~~~~--------------~~~------~~l~----~~~~~~----------~-~~~~~~im~~----~~~~v~~~~~~~~ 139 (330)
T 2v8q_E 99 KSAL--------------VQI------YELE----EHKIET----------W-REVYLQDSFK----PLVCISPNASLFD 139 (330)
T ss_dssp HHHT--------------TTC------CCGG----GCBHHH----------H-HHHHSSSSCC----CCCCBCTTSBHHH
T ss_pred hccc--------------cch------hHHh----hccHHH----------H-HHHHhhcccC----CceEeCCCCCHHH
Confidence 0000 000 0000 000000 0 1134566776 8889999999999
Q ss_pred HHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHHHHH
Q 014353 205 MLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFK 284 (426)
Q Consensus 205 ~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~ 284 (426)
++..|.+++++++||+|.++++++|++|..|+++++...........+...++.++. +|...+++++.+++++.++++
T Consensus 140 a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~~--v~~~~~~~~v~~~~~l~~~~~ 217 (330)
T 2v8q_E 140 AVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQ--IGTYANIAMVRTTTPVYVALG 217 (330)
T ss_dssp HHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHHT--CSBCSSCCCEETTCBHHHHHH
T ss_pred HHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHHhc--ccCcCCceEECCCCCHHHHHH
Confidence 999999999999999993268999999999999988654221111223344555532 354234899999999999999
Q ss_pred HHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCC
Q 014353 285 LMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHT 364 (426)
Q Consensus 285 ~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~t 364 (426)
.|.+++++++||+|++| +++|+||.+|+++.+.... +... ..++.+++.. ...|.+++.+|+++++
T Consensus 218 ~m~~~~~~~~~Vvd~~~-~l~Giit~~dl~~~~~~~~-~~~~--------~~~v~~~~~~----~~~~~~~~~~v~~~~~ 283 (330)
T 2v8q_E 218 IFVQHRVSALPVVDEKG-RVVDIYSKFDVINLAAEKT-YNNL--------DVSVTKALQH----RSHYFEGVLKCYLHET 283 (330)
T ss_dssp HHHHHCCSEEEEECTTS-BEEEEEEGGGTGGGGGSSC-CCCC--------SSBHHHHGGG----CCSCCCSCCEECTTSB
T ss_pred HHHHcCCCeEEEECCCC-cEEEEEEHHHHHHHHhccc-cccc--------cCcHHHHHhc----cccccCCCeEECCCCc
Confidence 99999999999999887 9999999999998875432 1111 1235555542 1345668999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353 365 IKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP 406 (426)
Q Consensus 365 l~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~ 406 (426)
+.+++++|.+++++++||+|++|+++|+||.+||++++..+.
T Consensus 284 l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~~~ 325 (330)
T 2v8q_E 284 LEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLTG 325 (330)
T ss_dssp HHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSSC
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhhc
Confidence 999999999999999999998899999999999999998653
No 5
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=100.00 E-value=3e-31 Score=257.27 Aligned_cols=295 Identities=20% Similarity=0.344 Sum_probs=220.2
Q ss_pred HhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCC
Q 014353 47 LNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEP 126 (426)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~ 126 (426)
+...++..+++++.....+++++++++|+.+|++.|.+++++++||+|++. ++++|+|+..||+.++......
T Consensus 15 ~~~~l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~-------~~~vGiv~~~Dl~~~~~~~~~~ 87 (334)
T 2qrd_G 15 IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA-------NKFAGLLTMADFVNVIKYYYQS 87 (334)
T ss_dssp HHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTT-------TEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCC-------CeEEEEEEHHHHHHHHHHHhhc
Confidence 556667799999833356799999999999999999999999999999864 7999999999999876543110
Q ss_pred CCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccch----hhhccccccCCc--EEecCCC
Q 014353 127 PSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKV----RDIAGSFRWAPF--LALQKSN 200 (426)
Q Consensus 127 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v----~~i~~~~~~~~~--~~v~~~~ 200 (426)
.. . .. .+.. ........+ +++|.. ++ +++.+++
T Consensus 88 ~~---------------~------~~-------------~~~~---~~~~~~~~i~~~l~~im~~----~~~~~~v~~~~ 126 (334)
T 2qrd_G 88 SS---------------F------PE-------------AIAE---IDKFRLLGLREVERKIGAI----PPETIYVHPMH 126 (334)
T ss_dssp CS---------------C------GG-------------GGGG---GGSCBHHHHHHHHHHHTCS----CSSCCCBCTTS
T ss_pred cC---------------C------cc-------------HHHH---HhhhchhhHHHHHHhhccC----CCceeeeCCCC
Confidence 00 0 00 0000 000000112 234543 55 8899999
Q ss_pred CHHHHHHHHhhcCCcEeEEEeCCCCe----EEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCC
Q 014353 201 SFLTMLLLLSKYKMKSIPVVDLGEGT----IDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYED 276 (426)
Q Consensus 201 ~l~~~l~~l~~~~~~~ipVvd~~~~~----l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~ 276 (426)
++.+++..|.+++++++||+|.++++ ++|++|..|+++++...... ......++.++.. +|..+ ++++.++
T Consensus 127 ~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~---~~~~~~~v~~l~~-~m~~~-~~~v~~~ 201 (334)
T 2qrd_G 127 SLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKE---TAMLRVPLNQMTI-GTWSN-LATASME 201 (334)
T ss_dssp BHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGG---GGGCCCBGGGSSC-SBCSS-CCCBCTT
T ss_pred cHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccc---hhhhhCcHHHhCC-cccCC-ceEECCC
Confidence 99999999999999999999843234 99999999999988643110 0122355666321 36654 8999999
Q ss_pred CcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCcCCc
Q 014353 277 EPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGM 356 (426)
Q Consensus 277 ~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 356 (426)
+++.++++.|.+++++++||+|++| +++|+||.+|+++.+..+. +. ....++.++|... ..+. +++
T Consensus 202 ~~~~~~~~~m~~~~~~~~~Vvd~~~-~~~Giit~~dl~~~~~~~~-~~--------~~~~~v~~~m~~~--~~~~--~~~ 267 (334)
T 2qrd_G 202 TKVYDVIKMLAEKNISAVPIVNSEG-TLLNVYESVDVMHLIQDGD-YS--------NLDLSVGEALLKR--PANF--DGV 267 (334)
T ss_dssp SBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEETHHHHHHHTTSC-GG--------GGGSBHHHHHTTC--CTTC--CCC
T ss_pred CcHHHHHHHHHHcCCcEEEEEcCCC-cEEEEEEHHHHHHHhhccc-cc--------cccCcHHHHHhcc--cccC--CCC
Confidence 9999999999999999999999887 9999999999999875432 11 1122355555420 0000 378
Q ss_pred eeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q 014353 357 VTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG 408 (426)
Q Consensus 357 ~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~ 408 (426)
.+|++++++.+++++|.+++++++||+|++|+++|+||.+||++++..+...
T Consensus 268 ~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~~~~~~ 319 (334)
T 2qrd_G 268 HTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTT 319 (334)
T ss_dssp CEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHHSCCC-
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHHhcccc
Confidence 9999999999999999999999999999889999999999999999877653
No 6
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=100.00 E-value=6.5e-33 Score=262.33 Aligned_cols=262 Identities=17% Similarity=0.263 Sum_probs=187.9
Q ss_pred CCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHh
Q 014353 62 PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAA 141 (426)
Q Consensus 62 ~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~ 141 (426)
|.++++++++++|+.+|+++|.++++.++||+|++ |+++|+++..|++..+.
T Consensus 7 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~--------~~~~Giv~~~dl~~~~~-------------------- 58 (282)
T 2yzq_A 7 MTQNPVTITLPATRNYALELFKKYKVRSFPVVNKE--------GKLVGIISVKRILVNPD-------------------- 58 (282)
T ss_dssp SEESCCCEESSCC------------CCEEEEECTT--------CCEEEEEESSCC-------------------------
T ss_pred ccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC--------CcEEEEEEHHHHHhhhc--------------------
Confidence 67788999999999999999999999999999986 89999999999974311
Q ss_pred hhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEe
Q 014353 142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVD 221 (426)
Q Consensus 142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd 221 (426)
..+++++|.+ ++.++.+++++.+++..|.+++++++||+|
T Consensus 59 ------------------------------------~~~v~~~m~~----~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd 98 (282)
T 2yzq_A 59 ------------------------------------EEQLAMLVKR----DVPVVKENDTLKKAAKLMLEYDYRRVVVVD 98 (282)
T ss_dssp -----------------------------------------CCCBS----CCCEEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred ------------------------------------cCCHHHHcCC----CCcEECCCCcHHHHHHHHHHcCCCEEEEEc
Confidence 2356777775 678999999999999999999999999999
Q ss_pred CCCCeEEEEEeHHHHHH-HHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC
Q 014353 222 LGEGTIDNIITQSSVIH-MLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG 300 (426)
Q Consensus 222 ~~~~~l~Giis~~Dl~~-~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~ 300 (426)
. +++++|++|..|+++ .+.... .....++.+ +|..+ ++++.+++++.++++.|.+++++++||+|++
T Consensus 99 ~-~~~~~Giit~~di~~~~~~~~~------~~~~~~v~~----~m~~~-~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~ 166 (282)
T 2yzq_A 99 S-KGKPVGILTVGDIIRRYFAKSE------KYKGVEIEP----YYQRY-VSIVWEGTPLKAALKALLLSNSMALPVVDSE 166 (282)
T ss_dssp T-TSCEEEEEEHHHHHHHTTTTCS------GGGGCBSTT----TSBSC-CCCEETTSBHHHHHHHHHTCSSSEEEEECTT
T ss_pred C-CCEEEEEEEHHHHHHHHHhccC------CcccCcHHH----HhCCC-CEEECCCCCHHHHHHHHHHcCCcEEEEEcCC
Confidence 4 689999999999998 665321 112345666 78764 8999999999999999999999999999988
Q ss_pred CCeEEEEEeHHHHH------HHhhCCcc--cc---ccccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHH
Q 014353 301 GNKAVGNISLRDIQ------FLLTAPEI--YH---DYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELI 369 (426)
Q Consensus 301 ~~~lvGiIs~~Dl~------~~~~~~~~--~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~ 369 (426)
| +++|+||.+|++ +++..... .. .........+..... ......++.++|.+++.+|++++++.+|+
T Consensus 167 ~-~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~im~~~~~~v~~~~~l~~a~ 244 (282)
T 2yzq_A 167 G-NLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFE-LQLPNKPVAEIMTRDVIVATPHMTVHEVA 244 (282)
T ss_dssp S-CEEEEEEGGGGGGCGGGCC---------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHH
T ss_pred C-eEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhHhh-hhhccCCHHHhcCCCCceeCCCCCHHHHH
Confidence 7 999999999998 33210000 00 000000000000000 00112367788999999999999999999
Q ss_pred HHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 370 HLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 370 ~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
++|.+++++++||+|++|+++|+||.+||++++..+
T Consensus 245 ~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~~~~ 280 (282)
T 2yzq_A 245 LKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLVKS 280 (282)
T ss_dssp HHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGCC-
T ss_pred HHHHHcCcceeEEECCCCCEEEEEeHHHHHHHHHhh
Confidence 999999999999999888999999999999987654
No 7
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.91 E-value=9.7e-24 Score=200.87 Aligned_cols=193 Identities=21% Similarity=0.284 Sum_probs=163.7
Q ss_pred cCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCC
Q 014353 53 SIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSS 132 (426)
Q Consensus 53 ~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~ 132 (426)
..+++++ |+++++++.+++++.+|+++|.+++++.+||+|++ ++++|++|..|++..+...
T Consensus 92 ~~~v~~i--m~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~--------~~lvGivt~~dl~~~~~~~--------- 152 (296)
T 3ddj_A 92 TTPIIDY--MTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN--------DKPVGIVTEREFLLLYKDL--------- 152 (296)
T ss_dssp TSBGGGT--SEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTT--------SCEEEEEEHHHHGGGGGGS---------
T ss_pred cccHHHh--ccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC--------CcEEEEEeHHHHHHhhhcc---------
Confidence 5678888 88899999999999999999999999999999987 8999999999997543211
Q ss_pred CCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhc
Q 014353 133 SPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKY 212 (426)
Q Consensus 133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~ 212 (426)
....++.++|.. ++.++.+++++.+++..|.++
T Consensus 153 -------------------------------------------~~~~~v~~~m~~----~~~~v~~~~~l~~~~~~m~~~ 185 (296)
T 3ddj_A 153 -------------------------------------------DEIFPVKVFMST----KVQTIYKEVRLDQAVKLMLRR 185 (296)
T ss_dssp -------------------------------------------CCCCBHHHHSBC----SCCCEETTSBHHHHHHHHHHH
T ss_pred -------------------------------------------cccccHHHhhcC----CCeEECCCCCHHHHHHHHHHc
Confidence 123478899986 888999999999999999999
Q ss_pred CCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCC
Q 014353 213 KMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIG 292 (426)
Q Consensus 213 ~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~ 292 (426)
+++++||+| ++++++|++|..|+++.+...............++.+ +|+++ ++++.+++++.++++.|.+++++
T Consensus 186 ~~~~~~Vvd-~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~----~m~~~-~~~v~~~~~l~~a~~~m~~~~~~ 259 (296)
T 3ddj_A 186 GFRRLPVID-DDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD----VMVTN-LVTIDELASVNRAAAEMIVKRIG 259 (296)
T ss_dssp TCSEEEEEC-TTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH----HSBCC-CCBCCTTSBHHHHHHHHHHHTCS
T ss_pred CCCEEEEEc-CCCEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCHHH----HhCCC-CeEECCCCcHHHHHHHHHHcCCC
Confidence 999999999 4899999999999999886321100001123456777 78764 99999999999999999999999
Q ss_pred eeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353 293 GIPVVEKGGNKAVGNISLRDIQFLLT 318 (426)
Q Consensus 293 ~lpVvd~~~~~lvGiIs~~Dl~~~~~ 318 (426)
++||+|++| +++|+||.+||++++.
T Consensus 260 ~l~Vvd~~g-~~~Giit~~Dil~~l~ 284 (296)
T 3ddj_A 260 SLLILNKDN-TIRGIITERDLLIALH 284 (296)
T ss_dssp EEEEECTTS-CEEEEEEHHHHHHHHH
T ss_pred EEEEECCCC-eEEEEEcHHHHHHHHH
Confidence 999999888 9999999999999974
No 8
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.90 E-value=1.1e-22 Score=191.60 Aligned_cols=184 Identities=21% Similarity=0.355 Sum_probs=154.4
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcch--------hhhhccccccccccC
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEW--------FESWGKKKLSEIGLP 263 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~--------~~~~~~~~v~~~~~~ 263 (426)
+++++.+++++.++++.|.+++++++||+|.++++++|++|..|++.++........ +......++++
T Consensus 13 ~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---- 88 (280)
T 3kh5_A 13 KIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVRE---- 88 (280)
T ss_dssp CCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTSBGGG----
T ss_pred CcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhhhHHH----
Confidence 889999999999999999999999999999547999999999999998743221111 11122456777
Q ss_pred CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME 343 (426)
Q Consensus 264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 343 (426)
+|.++ ++++.+++++.++++.|.+++++++||+|++| +++|++|.+|+++.+.....
T Consensus 89 im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~~--------------------- 145 (280)
T 3kh5_A 89 IMEEN-VITLKENADIDEAIETFLTKNVGGAPIVNDEN-QLISLITERDVIRALLDKID--------------------- 145 (280)
T ss_dssp TSBCS-CCCEETTCBHHHHHHHHHHTTCSEEEEECTTC-BEEEEEEHHHHHHHHGGGSC---------------------
T ss_pred hcCCC-CEEECCCCCHHHHHHHHHhCCCCEEEEEcCCC-EEEEEEEHHHHHHHHhhcCC---------------------
Confidence 88874 99999999999999999999999999999988 99999999999988643210
Q ss_pred hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353 344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV 403 (426)
Q Consensus 344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~ 403 (426)
....+.++|.+++.++++++++.++++.|.+++++++||+ ++|+++|+||.+|+++.+.
T Consensus 146 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~ 204 (280)
T 3kh5_A 146 ENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLG 204 (280)
T ss_dssp TTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHT
T ss_pred CCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHh
Confidence 0114556667799999999999999999999999999999 5799999999999999985
No 9
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.89 E-value=2.1e-22 Score=194.04 Aligned_cols=193 Identities=15% Similarity=0.245 Sum_probs=155.7
Q ss_pred CCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHh
Q 014353 62 PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAA 141 (426)
Q Consensus 62 ~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~ 141 (426)
|+++++++++++++.+|++.|.+++++.+||+|++..... ++++|++|..|++.++.....
T Consensus 120 ~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~---~~l~Givt~~di~~~l~~~~~---------------- 180 (323)
T 3t4n_C 120 DQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHR---EIVVSVLTQYRILKFVALNCR---------------- 180 (323)
T ss_dssp ----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCC---EEEEEEEEHHHHHHHHHHHCG----------------
T ss_pred CCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCc---cceEEEecHHHHHHHHHhcCC----------------
Confidence 6789999999999999999999999999999998721100 139999999999988764421
Q ss_pred hhcCccccccccCCCCcccccccchhhcccccccccccchhhh---ccccccCCcEEecCCCCHHHHHHHHhhcCCcEeE
Q 014353 142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDI---AGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIP 218 (426)
Q Consensus 142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i---~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ip 218 (426)
...+...++.++ |.. ++.++.+++++.+++..|.+++++++|
T Consensus 181 -------------------------------~~~~~~~~v~~~~~~m~~----~~~~v~~~~~~~~~~~~m~~~~~~~~p 225 (323)
T 3t4n_C 181 -------------------------------ETHFLKIPIGDLNIITQD----NMKSCQMTTPVIDVIQMLTQGRVSSVP 225 (323)
T ss_dssp -------------------------------GGGGCCSBGGGTTCSBCT----TCCCBCTTSBHHHHHHHHHHHTCSEEE
T ss_pred -------------------------------chhhhhCcHHHcCCCCCC----CcEEECCCCcHHHHHHHHHHcCCCEEE
Confidence 012234567888 765 888999999999999999999999999
Q ss_pred EEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccC-----CeeEeCCCCcHHHHHHHHHhcCCCe
Q 014353 219 VVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSAN-----HIVKVYEDEPVLQAFKLMRRKKIGG 293 (426)
Q Consensus 219 Vvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~-----~~~~v~~~~~v~~a~~~m~~~~~~~ 293 (426)
|+| ++|+++|++|..|+++++..... .....++.+ +|++. +++++.+++++.++++.|.++++++
T Consensus 226 Vvd-~~~~~~Giit~~dl~~~~~~~~~-----~~~~~~v~~----~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~ 295 (323)
T 3t4n_C 226 IID-ENGYLINVYEAYDVLGLIKGGIY-----NDLSLSVGE----ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHR 295 (323)
T ss_dssp EEC-TTCBEEEEEETTHHHHHHHTTHH-----HHTTSBHHH----HGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCE
T ss_pred EEC-CCCeEEEEEeHHHHHHHHhhchh-----hhccCCHHH----HHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCE
Confidence 999 47999999999999998864311 111346677 66652 4899999999999999999999999
Q ss_pred eEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353 294 IPVVEKGGNKAVGNISLRDIQFLLTA 319 (426)
Q Consensus 294 lpVvd~~~~~lvGiIs~~Dl~~~~~~ 319 (426)
+||+|++| +++|+||.+||++++..
T Consensus 296 l~Vvd~~~-~l~Giit~~Dil~~l~~ 320 (323)
T 3t4n_C 296 FFVVDDVG-RLVGVLTLSDILKYILL 320 (323)
T ss_dssp EEEECTTS-BEEEEEEHHHHHHHHHH
T ss_pred EEEECCCC-cEEEEEEHHHHHHHHHh
Confidence 99999888 99999999999998753
No 10
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.89 E-value=1.6e-22 Score=190.86 Aligned_cols=201 Identities=18% Similarity=0.248 Sum_probs=153.9
Q ss_pred HhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHH-HHHhhcC
Q 014353 47 LNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAV-WILHQSE 125 (426)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~-~l~~~~~ 125 (426)
+.+.+...++.++ |.++++++++++++.+|++.|.++++..+||+|++ |+++|++|..|+++ ++...
T Consensus 53 l~~~~~~~~v~~~--m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~--------~~~~Giit~~di~~~~~~~~-- 120 (282)
T 2yzq_A 53 ILVNPDEEQLAML--VKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSK--------GKPVGILTVGDIIRRYFAKS-- 120 (282)
T ss_dssp C----------CC--CBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTT--------SCEEEEEEHHHHHHHTTTTC--
T ss_pred HHhhhccCCHHHH--cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CEEEEEEEHHHHHHHHHhcc--
Confidence 3344556778887 77789999999999999999999999999999998 89999999999986 42210
Q ss_pred CCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHH
Q 014353 126 PPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTM 205 (426)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~ 205 (426)
......+++++|.. ++.++.+++++.++
T Consensus 121 ------------------------------------------------~~~~~~~v~~~m~~----~~~~v~~~~~l~~~ 148 (282)
T 2yzq_A 121 ------------------------------------------------EKYKGVEIEPYYQR----YVSIVWEGTPLKAA 148 (282)
T ss_dssp ------------------------------------------------SGGGGCBSTTTSBS----CCCCEETTSBHHHH
T ss_pred ------------------------------------------------CCcccCcHHHHhCC----CCEEECCCCCHHHH
Confidence 01123467788876 78899999999999
Q ss_pred HHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHH------HHHHh------c-------cC-cch----hhhhccccccccc
Q 014353 206 LLLLSKYKMKSIPVVDLGEGTIDNIITQSSVI------HMLAE------C-------AG-LEW----FESWGKKKLSEIG 261 (426)
Q Consensus 206 l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~------~~l~~------~-------~~-~~~----~~~~~~~~v~~~~ 261 (426)
+..|.+++++++||+| ++++++|++|..|++ +++.. . .. ... .......++++
T Consensus 149 ~~~~~~~~~~~l~Vvd-~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-- 225 (282)
T 2yzq_A 149 LKALLLSNSMALPVVD-SEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAE-- 225 (282)
T ss_dssp HHHHHTCSSSEEEEEC-TTSCEEEEEEGGGGGGCGGGCC--------------------------------CCCBGGG--
T ss_pred HHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhccCCHHH--
Confidence 9999999999999999 478999999999998 44420 0 00 000 01122456666
Q ss_pred cCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353 262 LPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT 318 (426)
Q Consensus 262 ~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~ 318 (426)
+|+++ ++++.+++++.+|+++|.+++++++||+|++| +++|+||++||++++.
T Consensus 226 --im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~lvGiit~~Dil~~~~ 278 (282)
T 2yzq_A 226 --IMTRD-VIVATPHMTVHEVALKMAKYSIEQLPVIRGEG-DLIGLIRDFDLLKVLV 278 (282)
T ss_dssp --TCBSS-CCCBCTTSBHHHHHHHHHHHTCSEEEEEETTT-EEEEEEEHHHHGGGGC
T ss_pred --hcCCC-CceeCCCCCHHHHHHHHHHcCcceeEEECCCC-CEEEEEeHHHHHHHHH
Confidence 88875 99999999999999999999999999999877 9999999999998864
No 11
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.85 E-value=1e-20 Score=182.85 Aligned_cols=190 Identities=18% Similarity=0.254 Sum_probs=153.6
Q ss_pred CCCceEEEeCCCCHHHHHHHHHHCCcccceeeec-CCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHH
Q 014353 62 PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDV-DAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAA 140 (426)
Q Consensus 62 ~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~-~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~ 140 (426)
|.++++++++++++.+|+++|.+++++.+||+|+ + |+++|+||..|+++++........
T Consensus 124 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~--------~~~~Givt~~dl~~~~~~~~~~~~------------ 183 (330)
T 2v8q_E 124 SFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES--------GNTLYILTHKRILKFLKLFITEFP------------ 183 (330)
T ss_dssp SCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTT--------CCEEEEECHHHHHHHHHHHSCSSS------------
T ss_pred ccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCC--------CcEEEEEcHHHHHHHHHHHhhccC------------
Confidence 6789999999999999999999999999999998 6 899999999999988754321100
Q ss_pred hhhcCccccccccCCCCcccccccchhhcccccccccccchhhh--cc-ccccCCcEEecCCCCHHHHHHHHhhcCCcEe
Q 014353 141 AVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDI--AG-SFRWAPFLALQKSNSFLTMLLLLSKYKMKSI 217 (426)
Q Consensus 141 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i--~~-~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~i 217 (426)
...+...++.++ |. . ++.++.+++++.+++..|.+++++++
T Consensus 184 --------------------------------~~~~~~~~v~~~~v~~~~----~~~~v~~~~~l~~~~~~m~~~~~~~~ 227 (330)
T 2v8q_E 184 --------------------------------KPEFMSKSLEELQIGTYA----NIAMVRTTTPVYVALGIFVQHRVSAL 227 (330)
T ss_dssp --------------------------------CCGGGGSBHHHHTCSBCS----SCCCEETTCBHHHHHHHHHHHCCSEE
T ss_pred --------------------------------chhhhcCCHHHhcccCcC----CceEECCCCCHHHHHHHHHHcCCCeE
Confidence 001122345555 33 3 77889999999999999999999999
Q ss_pred EEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCc------ccCCeeEeCCCCcHHHHHHHHHhcCC
Q 014353 218 PVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIM------SANHIVKVYEDEPVLQAFKLMRRKKI 291 (426)
Q Consensus 218 pVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im------~~~~~~~v~~~~~v~~a~~~m~~~~~ 291 (426)
||+| ++++++|++|..|+++.+....... ...++.+ +| .. +++++.+++++.++++.|.++++
T Consensus 228 ~Vvd-~~~~l~Giit~~dl~~~~~~~~~~~-----~~~~v~~----~~~~~~~~~~-~~~~v~~~~~l~~a~~~m~~~~~ 296 (330)
T 2v8q_E 228 PVVD-EKGRVVDIYSKFDVINLAAEKTYNN-----LDVSVTK----ALQHRSHYFE-GVLKCYLHETLEAIINRLVEAEV 296 (330)
T ss_dssp EEEC-TTSBEEEEEEGGGTGGGGGSSCCCC-----CSSBHHH----HGGGCCSCCC-SCCEECTTSBHHHHHHHHHHHTC
T ss_pred EEEC-CCCcEEEEEEHHHHHHHHhcccccc-----ccCcHHH----HHhccccccC-CCeEECCCCcHHHHHHHHHHCCC
Confidence 9999 4799999999999988775321100 1235555 44 34 48999999999999999999999
Q ss_pred CeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353 292 GGIPVVEKGGNKAVGNISLRDIQFLLTA 319 (426)
Q Consensus 292 ~~lpVvd~~~~~lvGiIs~~Dl~~~~~~ 319 (426)
+++||+|++| +++|+||.+||++++..
T Consensus 297 ~~l~Vvd~~g-~l~Giit~~Dil~~~~~ 323 (330)
T 2v8q_E 297 HRLVVVDEHD-VVKGIVSLSDILQALVL 323 (330)
T ss_dssp SEEEEECTTS-BEEEEEEHHHHHHHHHS
T ss_pred cEEEEEcCCC-cEEEEEeHHHHHHHHHh
Confidence 9999999888 99999999999998754
No 12
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.85 E-value=2.3e-20 Score=180.59 Aligned_cols=186 Identities=17% Similarity=0.255 Sum_probs=152.4
Q ss_pred eEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccc----eEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHh
Q 014353 66 VIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDR----YIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAA 141 (426)
Q Consensus 66 vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~----~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~ 141 (426)
++++.+++++.+|++.|.+++++.+||+|++. ++ ++|++|..||+.++.....
T Consensus 119 ~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-------~~~~~~~~Givt~~dl~~~~~~~~~---------------- 175 (334)
T 2qrd_G 119 TIYVHPMHSLMDACLAMSKSRARRIPLIDVDG-------ETGSEMIVSVLTQYRILKFISMNCK---------------- 175 (334)
T ss_dssp CCCBCTTSBHHHHHHHHHHSCCSEEEEEEEET-------TTTEEEEEEEEEHHHHHHHHHHHCG----------------
T ss_pred eeeeCCCCcHHHHHHHHHHCCceEEEEEeCCC-------CcCccceEEEeeHHHHHHHHHhhcc----------------
Confidence 38999999999999999999999999999862 34 9999999999987654310
Q ss_pred hhcCccccccccCCCCcccccccchhhcccccccccccchhh---hccccccCCcEEecCCCCHHHHHHHHhhcCCcEeE
Q 014353 142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRD---IAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIP 218 (426)
Q Consensus 142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~---i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ip 218 (426)
.......++.+ +|.. ++.++.+++++.+++..|.+++++++|
T Consensus 176 -------------------------------~~~~~~~~v~~l~~~m~~----~~~~v~~~~~~~~~~~~m~~~~~~~~~ 220 (334)
T 2qrd_G 176 -------------------------------ETAMLRVPLNQMTIGTWS----NLATASMETKVYDVIKMLAEKNISAVP 220 (334)
T ss_dssp -------------------------------GGGGCCCBGGGSSCSBCS----SCCCBCTTSBHHHHHHHHHHHTCSEEE
T ss_pred -------------------------------chhhhhCcHHHhCCcccC----CceEECCCCcHHHHHHHHHHcCCcEEE
Confidence 00112345667 4665 788999999999999999999999999
Q ss_pred EEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCccc-----CCeeEeCCCCcHHHHHHHHHhcCCCe
Q 014353 219 VVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSA-----NHIVKVYEDEPVLQAFKLMRRKKIGG 293 (426)
Q Consensus 219 Vvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~-----~~~~~v~~~~~v~~a~~~m~~~~~~~ 293 (426)
|+| ++|+++|+||..|+++.+..... .....++.+ +|.. .+++++.+++++.++++.|.++++++
T Consensus 221 Vvd-~~~~~~Giit~~dl~~~~~~~~~-----~~~~~~v~~----~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~ 290 (334)
T 2qrd_G 221 IVN-SEGTLLNVYESVDVMHLIQDGDY-----SNLDLSVGE----ALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHR 290 (334)
T ss_dssp EEC-TTCBEEEEEETHHHHHHHTTSCG-----GGGGSBHHH----HHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCE
T ss_pred EEc-CCCcEEEEEEHHHHHHHhhcccc-----ccccCcHHH----HHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCE
Confidence 999 47899999999999998754321 011345666 6664 24899999999999999999999999
Q ss_pred eEEEeCCCCeEEEEEeHHHHHHHhhCC
Q 014353 294 IPVVEKGGNKAVGNISLRDIQFLLTAP 320 (426)
Q Consensus 294 lpVvd~~~~~lvGiIs~~Dl~~~~~~~ 320 (426)
+||+|++| +++|+||.+||++++...
T Consensus 291 l~Vvd~~g-~l~Giit~~dil~~~~~~ 316 (334)
T 2qrd_G 291 LFVVDENL-KLEGILSLADILNYIIYD 316 (334)
T ss_dssp EEEECTTC-BEEEEEEHHHHHHHHHSC
T ss_pred EEEECCCC-eEEEEEeHHHHHHHHHhc
Confidence 99999888 999999999999987643
No 13
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.82 E-value=2.4e-20 Score=162.77 Aligned_cols=145 Identities=26% Similarity=0.341 Sum_probs=112.5
Q ss_pred ccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccc----cc
Q 014353 253 GKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDY----RS 328 (426)
Q Consensus 253 ~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~----~~ 328 (426)
...++++ +|+++ ++++.+++++.+|++.|.+++++++||+|++| +++|+||.+||++.......+... ..
T Consensus 16 ~~~~V~d----iM~~~-v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g-~lvGiit~~Dll~~~~~~~~~~~~~~~~~~ 89 (170)
T 4esy_A 16 RQVPIRD----ILTSP-VVTVREDDTLDAVAKTMLEHQIGCAPVVDQNG-HLVGIITESDFLRGSIPFWIYEASEILSRA 89 (170)
T ss_dssp HTSBGGG----GCCSC-CCCEETTSBHHHHHHHHHHTTCSEEEEECTTS-CEEEEEEGGGGGGGTCCTTHHHHHHHHTTT
T ss_pred cCCCHHH----hcCCC-CcEECCcCcHHHHHHHHHHcCCeEEEEEcCCc-cEEEEEEHHHHHHHHhhccccchhhhhhhc
Confidence 3567888 89875 99999999999999999999999999999988 999999999998876543211100 00
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353 329 ITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP 406 (426)
Q Consensus 329 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~ 406 (426)
.............. ..++.++|.+++++|++++++.+|+++|.+++++++||+| +|+++|+||++||+++++.+.
T Consensus 90 ~~~~~~~~~~~~~~--~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l~~~~ 164 (170)
T 4esy_A 90 IPAPEVEHLFETGR--KLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLLLLEE 164 (170)
T ss_dssp SCHHHHHHHHHHHT--TCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTSCCC-
T ss_pred cchhhHHhhhcccc--ccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHHHhcc
Confidence 11111111111111 1255667788999999999999999999999999999998 599999999999999987653
No 14
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.80 E-value=6.9e-19 Score=153.81 Aligned_cols=130 Identities=20% Similarity=0.231 Sum_probs=108.6
Q ss_pred hccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccc
Q 014353 252 WGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSI 329 (426)
Q Consensus 252 ~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~ 329 (426)
+...++++ +|++ .+++++.+++++.++++.|.+++++++||+|++ + +++|+||.+|+++....+.
T Consensus 39 l~~~~v~d----iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~-~lvGivt~~dl~~~~~~~~-------- 105 (172)
T 3lhh_A 39 LDERTISS----LMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVD-DMVGIISAKQLLSESIAGE-------- 105 (172)
T ss_dssp ----CTTT----TSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTT-SEEEEEEHHHHHHHHHTTC--------
T ss_pred cCCCCHHH----hCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCC-eEEEEEEHHHHHHHHhhcC--------
Confidence 33567777 8884 348999999999999999999999999999987 6 9999999999999865431
Q ss_pred cHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCc
Q 014353 330 TAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGY 409 (426)
Q Consensus 330 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~ 409 (426)
..++.++| +++.++.+++++.++++.|.+++++++||+|++|+++|+||++||++.+.+++...
T Consensus 106 ---------------~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~~~de 169 (172)
T 3lhh_A 106 ---------------RLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEFFQE 169 (172)
T ss_dssp ---------------CCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTTCC--
T ss_pred ---------------cccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCCCccc
Confidence 11344556 68999999999999999999999999999999999999999999999999887654
Q ss_pred c
Q 014353 410 F 410 (426)
Q Consensus 410 ~ 410 (426)
.
T Consensus 170 ~ 170 (172)
T 3lhh_A 170 D 170 (172)
T ss_dssp -
T ss_pred c
Confidence 3
No 15
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.80 E-value=1e-19 Score=158.74 Aligned_cols=152 Identities=18% Similarity=0.257 Sum_probs=117.9
Q ss_pred HHhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcC
Q 014353 46 KLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSE 125 (426)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~ 125 (426)
++.+.+..+|++++ |+++++++++++|+.+|+++|.+++++++||+|++ |+++|+||..||++.+.....
T Consensus 10 ~~~~~l~~~~V~di--M~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~--------g~lvGiit~~Dll~~~~~~~~ 79 (170)
T 4esy_A 10 AIARAIRQVPIRDI--LTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN--------GHLVGIITESDFLRGSIPFWI 79 (170)
T ss_dssp HHHHHHHTSBGGGG--CCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT--------SCEEEEEEGGGGGGGTCCTTH
T ss_pred HHHHHHcCCCHHHh--cCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC--------ccEEEEEEHHHHHHHHhhccc
Confidence 46778889999999 99999999999999999999999999999999998 999999999999764321100
Q ss_pred CCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHH
Q 014353 126 PPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTM 205 (426)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~ 205 (426)
. .... .+..... ..............+++++|.. +++++.+++++.++
T Consensus 80 ~--------------~~~~--------~~~~~~~------~~~~~~~~~~~~~~~v~~im~~----~~~tv~~~~~l~~a 127 (170)
T 4esy_A 80 Y--------------EASE--------ILSRAIP------APEVEHLFETGRKLTASAVMTQ----PVVTAAPEDSVGSI 127 (170)
T ss_dssp H--------------HHHH--------HHTTTSC------HHHHHHHHHHHTTCBHHHHCBC----CSCCBCTTSBHHHH
T ss_pred c--------------chhh--------hhhhccc------hhhHHhhhccccccchhhhccc----CcccCCcchhHHHH
Confidence 0 0000 0000000 0000000123345689999998 99999999999999
Q ss_pred HHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHH
Q 014353 206 LLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLA 241 (426)
Q Consensus 206 l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~ 241 (426)
+..|.+++++++||+| +|+++|+||.+|+++++.
T Consensus 128 ~~~m~~~~~~~lpVvd--~g~lvGivt~~Dil~~l~ 161 (170)
T 4esy_A 128 ADQMRRHGIHRIPVVQ--DGVPVGIVTRRDLLKLLL 161 (170)
T ss_dssp HHHHHHTTCSEEEEEE--TTEEEEEEEHHHHTTTSC
T ss_pred HHHHHHcCCcEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence 9999999999999999 589999999999998874
No 16
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.79 E-value=1.3e-18 Score=148.09 Aligned_cols=126 Identities=25% Similarity=0.407 Sum_probs=110.0
Q ss_pred hccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccc
Q 014353 252 WGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSI 329 (426)
Q Consensus 252 ~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~ 329 (426)
+...++++ +|++ .+++++.+++++.++++.|.+++++++||+|++ + +++|+||.+|+++.+..+.
T Consensus 20 l~~~~v~d----iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~-~lvGivt~~dl~~~~~~~~-------- 86 (148)
T 3lv9_A 20 FEEKKIRE----IMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKD-DILGFVHIRDLYNQKINEN-------- 86 (148)
T ss_dssp GGTCBGGG----TSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTT-SEEEEEEHHHHHHHHHHHS--------
T ss_pred cCCCCHHH----ccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCC-cEEEEEEHHHHHHHHhcCC--------
Confidence 44567888 8987 239999999999999999999999999999987 6 9999999999998854221
Q ss_pred cHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353 330 TAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP 406 (426)
Q Consensus 330 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~ 406 (426)
..++.++| +++.++++++++.++++.|.+++++++||+|++|+++|+||.+||++.+++++
T Consensus 87 ---------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~i 147 (148)
T 3lv9_A 87 ---------------KIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVGEI 147 (148)
T ss_dssp ---------------CCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHHTC
T ss_pred ---------------CccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCcC
Confidence 11445566 68999999999999999999999999999999999999999999999999875
No 17
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.79 E-value=5.4e-19 Score=151.96 Aligned_cols=132 Identities=20% Similarity=0.261 Sum_probs=107.8
Q ss_pred cccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHH
Q 014353 254 KKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAK 332 (426)
Q Consensus 254 ~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~ 332 (426)
...+++ +|.| ++++++.+++++.+|++.|.+++++++||+|+++ +++|+||.+|+++++.......
T Consensus 14 ~~~~~~----iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~-~lvGiit~~Di~~~~~~~~~~~-------- 80 (156)
T 3k6e_A 14 LGQEET----FLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEK-QFVGTIGLRDIMAYQMEHDLSQ-------- 80 (156)
T ss_dssp HTTGGG----GEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-C-BEEEEEEHHHHHHHHHHHTCCH--------
T ss_pred hccHHH----hCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCC-cEEEEEEecchhhhhhhccccc--------
Confidence 445666 7876 4699999999999999999999999999999887 9999999999998865332110
Q ss_pred HHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q 014353 333 NFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG 408 (426)
Q Consensus 333 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~ 408 (426)
... ...++.++|.+++.++++++++.+|++.|.++++ +||||++|+++|+||++||++++.+....
T Consensus 81 ------~~~--~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~Dil~~~~~~~~~ 146 (156)
T 3k6e_A 81 ------EIM--ADTDIVHMTKTDVAVVSPDFTITEVLHKLVDESF--LPVVDAEGIFQGIITRKSILKAVNALLHD 146 (156)
T ss_dssp ------HHH--TTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEHHHHHHHHHHHSCC
T ss_pred ------ccc--cccCHHHhhcCCceecccccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEHHHHHHHHHHHhcc
Confidence 001 1125667788899999999999999999998764 99999999999999999999999665443
No 18
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.78 E-value=2.2e-18 Score=143.40 Aligned_cols=121 Identities=17% Similarity=0.250 Sum_probs=103.3
Q ss_pred Cccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeC-CCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHH
Q 014353 264 IMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEK-GGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKY 341 (426)
Q Consensus 264 im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~-~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 341 (426)
+|++ .+++++.+++++.++++.|.+++++++||+++ ++ +++|+||.+|+++++..+..+ ...++.++
T Consensus 7 iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~-~lvGivt~~dl~~~~~~~~~~----------~~~~v~~~ 75 (130)
T 3hf7_A 7 IMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLD-DAISMLRVREAYRLMTEKKEF----------TKEIMLRA 75 (130)
T ss_dssp HSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGG-GEEEEEEHHHHHHHHTSSSCC----------CHHHHHHH
T ss_pred hCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCC-cEEEEEEHHHHHHHHhccCcc----------chhhHHHh
Confidence 7864 35899999999999999999999999999976 45 999999999999987654311 02345665
Q ss_pred hhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353 342 MEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP 406 (426)
Q Consensus 342 ~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~ 406 (426)
| . ++.++.+++++.++++.|.+++++++||+|++|+++|+||.+||++.+.++.
T Consensus 76 m-~----------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g~i 129 (130)
T 3hf7_A 76 A-D----------EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF 129 (130)
T ss_dssp S-B----------CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC--
T ss_pred c-c----------CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhCCC
Confidence 5 2 7899999999999999999999999999999999999999999999999864
No 19
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.76 E-value=2.6e-18 Score=142.63 Aligned_cols=123 Identities=17% Similarity=0.308 Sum_probs=104.3
Q ss_pred cccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccccH
Q 014353 254 KKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSITA 331 (426)
Q Consensus 254 ~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~ 331 (426)
..++++ +|++ .+++++.+++++.++++.|.+++++++||+|++ + +++|+||.+|+++.+..+.
T Consensus 4 ~~~v~d----iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~-~~~Givt~~dl~~~~~~~~---------- 68 (129)
T 3jtf_A 4 ERTVAD----IMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRD-NIIGILLAKDLLRYMLEPA---------- 68 (129)
T ss_dssp CCBHHH----HCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTT-CEEEEEEGGGGGGGGTCTT----------
T ss_pred CCCHHH----hCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCC-cEEEEEEHHHHHhHhccCC----------
Confidence 456777 7884 348999999999999999999999999999986 6 9999999999988754221
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353 332 KNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP 406 (426)
Q Consensus 332 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~ 406 (426)
..+.++|. ++.++.+++++.++++.|.+++++++||+|++|+++|+||++||++.+++++
T Consensus 69 --------------~~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~gei 128 (129)
T 3jtf_A 69 --------------LDIRSLVR-PAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGDI 128 (129)
T ss_dssp --------------SCGGGGCB-CCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHHTC
T ss_pred --------------cCHHHHhC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCC
Confidence 12333443 5889999999999999999999999999999899999999999999999875
No 20
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.76 E-value=2.1e-18 Score=143.39 Aligned_cols=124 Identities=15% Similarity=0.215 Sum_probs=104.9
Q ss_pred cccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccccH
Q 014353 254 KKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSITA 331 (426)
Q Consensus 254 ~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~ 331 (426)
..++++ +|++ ..++++.+++++.++++.|.+++++++||+|++ + +++|+||.+|+++....+..
T Consensus 5 ~~~v~~----iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~-~~~Givt~~dl~~~~~~~~~--------- 70 (130)
T 3i8n_A 5 DVPVTQ----VMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKD-NIIGFVHRLELFKMQQSGSG--------- 70 (130)
T ss_dssp --CCTT----TSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTT-CEEEECCHHHHHHHHHTTTT---------
T ss_pred cCCHhh----CCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCC-cEEEEEEHHHHHHHHhcCCC---------
Confidence 456777 8885 346799999999999999999999999999987 6 99999999999998754321
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 332 KNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 332 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
..++.++|. ++.++.+++++.++++.|.+++++++||+|++|+++|+||.+||++.++++
T Consensus 71 ---~~~v~~~m~-----------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~ge 130 (130)
T 3i8n_A 71 ---QKQLGAVMR-----------PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLVGE 130 (130)
T ss_dssp ---TSBHHHHSE-----------ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHHTC
T ss_pred ---cCCHHHHhc-----------CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHcCC
Confidence 113444442 678999999999999999999999999999999999999999999999864
No 21
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.75 E-value=7.7e-18 Score=138.00 Aligned_cols=116 Identities=21% Similarity=0.319 Sum_probs=102.3
Q ss_pred CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME 343 (426)
Q Consensus 264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 343 (426)
+|.++ ++++.+++++.++++.|.+++++++||+|++| +++|+|+.+|+++.+..+.
T Consensus 6 im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-~~~G~vt~~dl~~~~~~~~---------------------- 61 (122)
T 3kpb_A 6 ILSKP-PITAHSNISIMEAAKILIKHNINHLPIVDEHG-KLVGIITSWDIAKALAQNK---------------------- 61 (122)
T ss_dssp HCCSC-CCCEETTSBHHHHHHHHHHHTCSCEEEECTTS-BEEEEECHHHHHHHHHTTC----------------------
T ss_pred hhCCC-CEEeCCCCcHHHHHHHHHHcCCCeEEEECCCC-CEEEEEEHHHHHHHHHhcc----------------------
Confidence 78775 89999999999999999999999999999888 9999999999998865431
Q ss_pred hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
.++.++|.+++.++.+++++.++++.|.+++.+++||+|++|+++|+||..||++++.++
T Consensus 62 --~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~~ 121 (122)
T 3kpb_A 62 --KTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGGK 121 (122)
T ss_dssp --CBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC--
T ss_pred --cCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhcC
Confidence 134455666899999999999999999999999999999889999999999999998754
No 22
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.75 E-value=2.4e-18 Score=144.25 Aligned_cols=129 Identities=13% Similarity=0.253 Sum_probs=103.0
Q ss_pred ccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccccHH
Q 014353 255 KKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSITAK 332 (426)
Q Consensus 255 ~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~ 332 (426)
.++++ +|++ .+++++.+++++.+|++.|.+++++++||+|++ + +++|+||.+||++.+.....
T Consensus 3 ~~v~~----iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~-~~vGivt~~dl~~~~~~~~~---------- 67 (136)
T 3lfr_A 3 LQVRD----IMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHD-DVLGVLLAKDLLPLILKADG---------- 67 (136)
T ss_dssp CBHHH----HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTT-CEEEEEEGGGGGGGGGSSSG----------
T ss_pred CChHh----ccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCC-cEEEEEEHHHHHHHHHhccC----------
Confidence 45666 7874 348999999999999999999999999999987 6 99999999999988653210
Q ss_pred HHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCcc
Q 014353 333 NFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYF 410 (426)
Q Consensus 333 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~~ 410 (426)
...++.++|. ++.++.+++++.+++++|.+++++++||+|++|+++|+||.+||++.+.++....+
T Consensus 68 -----------~~~~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~~~de~ 133 (136)
T 3lfr_A 68 -----------DSDDVKKLLR-PATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGDIEDEH 133 (136)
T ss_dssp -----------GGCCGGGTCB-CCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC--------
T ss_pred -----------CCcCHHHHcC-CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCCcCcc
Confidence 0113445554 48999999999999999999999999999999999999999999999998765443
No 23
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.75 E-value=4.7e-18 Score=145.45 Aligned_cols=130 Identities=18% Similarity=0.263 Sum_probs=107.5
Q ss_pred hccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEE-eCC-CCeEEEEEeHHHHHHHhhCCcccccccc
Q 014353 252 WGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVV-EKG-GNKAVGNISLRDIQFLLTAPEIYHDYRS 328 (426)
Q Consensus 252 ~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVv-d~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~ 328 (426)
+...++++ +|++ .+++++.+++++.+|++.|.+++++++||+ |++ + +++|+||.+|+++.+..+.
T Consensus 17 l~~~~v~~----iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~-~lvGivt~~dl~~~~~~~~------- 84 (153)
T 3oco_A 17 MNDKVASD----VMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKD-KIIGYAYNYDIVRQARIDD------- 84 (153)
T ss_dssp HHHCBHHH----HSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEE-EEEEEEEHHHHHHHHHHHT-------
T ss_pred cCCCEeee----EecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCC-cEEEEEEHHHHHhHHhcCC-------
Confidence 34567888 8886 349999999999999999999999999999 653 6 9999999999998854221
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q 014353 329 ITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG 408 (426)
Q Consensus 329 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~ 408 (426)
..++.++| +++.++.+++++.++++.|.+++++++||+|++|+++|+||.+||++.+.++...
T Consensus 85 ----------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~~d 147 (153)
T 3oco_A 85 ----------------KAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNLRD 147 (153)
T ss_dssp ----------------TSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC----
T ss_pred ----------------CCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccCCC
Confidence 12455666 6899999999999999999999999999999999999999999999999987665
Q ss_pred cc
Q 014353 409 YF 410 (426)
Q Consensus 409 ~~ 410 (426)
.+
T Consensus 148 e~ 149 (153)
T 3oco_A 148 EQ 149 (153)
T ss_dssp --
T ss_pred cc
Confidence 43
No 24
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.74 E-value=2e-18 Score=142.84 Aligned_cols=123 Identities=15% Similarity=0.373 Sum_probs=101.9
Q ss_pred ccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccccHH
Q 014353 255 KKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSITAK 332 (426)
Q Consensus 255 ~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~ 332 (426)
.++++ +|++ .+++++.+++++.++++.|.+++++++||+|++ + +++|+||.+|+++.+.... ...
T Consensus 3 ~~v~d----iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~-~~vGivt~~dl~~~~~~~~-----~~~--- 69 (127)
T 3nqr_A 3 QRVRD----IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKD-HIEGILMAKDLLPFMRSDA-----EAF--- 69 (127)
T ss_dssp CBHHH----HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTT-CEEEEEEGGGGGGGGSTTC-----CCC---
T ss_pred cCHHH----hcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCC-cEEEEEEHHHHHHHHhccC-----CCC---
Confidence 35666 7875 348999999999999999999999999999987 6 9999999999998864321 111
Q ss_pred HHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 333 NFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 333 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
++.++|. ++.++++++++.++++.|.+++++++||+|++|+++|+||++||++.++++
T Consensus 70 ----~v~~~m~-----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~ge 127 (127)
T 3nqr_A 70 ----SMDKVLR-----------TAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGE 127 (127)
T ss_dssp ----CHHHHCB-----------CCCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC---
T ss_pred ----CHHHHcC-----------CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCC
Confidence 2444442 578999999999999999999999999999999999999999999998763
No 25
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.74 E-value=1.2e-17 Score=146.07 Aligned_cols=130 Identities=18% Similarity=0.200 Sum_probs=110.7
Q ss_pred hccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC-CCeEEEEEeHHHHHHHhhCCccccccccc
Q 014353 252 WGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG-GNKAVGNISLRDIQFLLTAPEIYHDYRSI 329 (426)
Q Consensus 252 ~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~ 329 (426)
+...++++ +|++ .+++++.+++++.++++.|.+++++++||+|++ + +++|+|+.+||+..+..+.
T Consensus 33 l~~~~v~d----iM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~-~lvGivt~~Dl~~~~~~~~-------- 99 (173)
T 3ocm_A 33 LAERSIRS----IMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLD-EVVGIGRAKDLVADLITEG-------- 99 (173)
T ss_dssp HTTSCSTT----TSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTT-SEEEEEEHHHHHHHHHHHS--------
T ss_pred cCCCCHHH----hCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCC-CEEEEEEHHHHHHHHhcCC--------
Confidence 33567888 8975 358999999999999999999999999999986 6 9999999999998853211
Q ss_pred cHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCc
Q 014353 330 TAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGY 409 (426)
Q Consensus 330 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~ 409 (426)
...+. |.+++.++++++++.+++++|.+++++.+||+|++|+++|+||.+||++.+.++....
T Consensus 100 ---------------~~~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i~de 162 (173)
T 3ocm_A 100 ---------------RVRRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEFPDE 162 (173)
T ss_dssp ---------------SCCGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCCCCT
T ss_pred ---------------cchhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcCCCc
Confidence 01223 3458899999999999999999999999999999999999999999999999987765
Q ss_pred cc
Q 014353 410 FG 411 (426)
Q Consensus 410 ~~ 411 (426)
.+
T Consensus 163 ~~ 164 (173)
T 3ocm_A 163 DE 164 (173)
T ss_dssp TS
T ss_pred cc
Confidence 53
No 26
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.74 E-value=8.6e-18 Score=155.37 Aligned_cols=226 Identities=15% Similarity=0.143 Sum_probs=139.4
Q ss_pred cCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCC
Q 014353 53 SIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSS 132 (426)
Q Consensus 53 ~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~ 132 (426)
..+++++ |+++++++++++++.+|+++|.+++++++||+|++ |+++|+||..|+++++............
T Consensus 6 ~~~v~~i--m~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~--------~~l~Giit~~di~~~~~~~~~~~~~~~~ 75 (245)
T 3l2b_A 6 KLKVEDL--EMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN--------NHLLGMLSTSNITATYMDIWDSNILAKS 75 (245)
T ss_dssp CCBGGGS--CCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT--------CBEEEEEEHHHHHHHHHCCCCTTHHHHT
T ss_pred cCcHHHh--cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CEEEEEEEHHHHHHHHHHhhhhhhhhhc
Confidence 3567777 88999999999999999999999999999999988 8999999999999987653221100000
Q ss_pred CCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhc
Q 014353 133 SPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKY 212 (426)
Q Consensus 133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~ 212 (426)
...........+.. -..+........+.+ .........++.....+.++.+. +..+++..+.+.
T Consensus 76 ~~~~~~v~~~l~~~-----~l~~~~~~~~~~g~~--------~i~a~~~~~~~~~~~~~~ivIvg---dr~~~~~~~i~~ 139 (245)
T 3l2b_A 76 ATSLDNILDTLSAE-----AQNINEERKVFPGKV--------VVAAMQAESLKEFISEGDIAIAG---DRAEIQAELIEL 139 (245)
T ss_dssp TCCHHHHHHHTTCE-----EEECCTTCCCCCSCE--------EECCSCGGGGGGTCCTTCEEEEC---SCHHHHHHHHHT
T ss_pred cCCHHHHHHHhCCE-----EEeccCCcceeeeeE--------EEEeCChHHHHhcCCCCCEEEEC---CCHHHHHHHHHc
Confidence 00000000000000 000000000000000 00011122222222233555553 357888889999
Q ss_pred CCcEeEEEeCC-----------CCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHH
Q 014353 213 KMKSIPVVDLG-----------EGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQ 281 (426)
Q Consensus 213 ~~~~ipVvd~~-----------~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~ 281 (426)
++.++++.... .+.+..+.+..|........ ....++++ +|++.+++++.+++++.+
T Consensus 140 ~~~~liit~~~~~~~~v~~~a~~~~~~~i~t~~d~~~~~~~~--------~~~~~v~~----im~~~~~~~~~~~~~~~~ 207 (245)
T 3l2b_A 140 KVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTASRLI--------VQSLPVDY----VMTKDNLVAVSTDDLVED 207 (245)
T ss_dssp TCSEEEECTTCCCCHHHHHHHHHHTCEEEECSSCHHHHHHHG--------GGGSBHHH----HSBCTTCCCEETTSBHHH
T ss_pred CCCEEEECCCCCCCHHHHHHHHHcCCeEEEeCCChHHHHHHH--------hcCCceee----EecCCccEEECCCCcHHH
Confidence 99998887421 12245566666655443221 11356777 888334999999999999
Q ss_pred HHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 014353 282 AFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLL 317 (426)
Q Consensus 282 a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~ 317 (426)
++++|.+++++++||+|++| +++|+||.+|+++..
T Consensus 208 ~~~~m~~~~~~~~pVvd~~~-~~~Giit~~dll~~~ 242 (245)
T 3l2b_A 208 VKVTMSETRYSNYPVIDENN-KVVGSIARFHLISTH 242 (245)
T ss_dssp HHHHHHHHCCSEEEEECTTC-BEEEEEECC------
T ss_pred HHHHHHhcCCceEEEEcCCC-eEEEEEEHHHhhchh
Confidence 99999999999999999888 999999999998774
No 27
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.73 E-value=2.3e-17 Score=136.61 Aligned_cols=124 Identities=13% Similarity=0.134 Sum_probs=107.0
Q ss_pred cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHH
Q 014353 254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKN 333 (426)
Q Consensus 254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~ 333 (426)
+.++++ +|.++ +.++.+++++.++++.|.+++++++||+|+ | +++|+||.+|+++.+..+...
T Consensus 4 s~~v~~----~m~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~-~~~Givt~~dl~~~~~~~~~~---------- 66 (128)
T 3gby_A 4 SVTFSY----LAETD-YPVFTLGGSTADAARRLAASGCACAPVLDG-E-RYLGMVHLSRLLEGRKGWPTV---------- 66 (128)
T ss_dssp TCBGGG----GCBCC-SCCEETTSBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHTTCSSSCCT----------
T ss_pred ceEHHH----hhcCC-cceECCCCCHHHHHHHHHHCCCcEEEEEEC-C-EEEEEEEHHHHHHHHhhCCcc----------
Confidence 356677 78875 999999999999999999999999999999 7 999999999999875433110
Q ss_pred HHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 334 FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 334 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
..++.++|.+++.++.+++++.++++.|.+++++++||+|++|+++|+||.+||++++.+.
T Consensus 67 -----------~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~~ 127 (128)
T 3gby_A 67 -----------KEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAER 127 (128)
T ss_dssp -----------TCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHTT
T ss_pred -----------cCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHhh
Confidence 0135566677899999999999999999999999999999999999999999999998754
No 28
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.73 E-value=5.1e-17 Score=135.24 Aligned_cols=126 Identities=27% Similarity=0.411 Sum_probs=107.6
Q ss_pred cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHH
Q 014353 254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKN 333 (426)
Q Consensus 254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~ 333 (426)
..++++ +|.++ ++++.+++++.++++.|.+++++++||+| +| +++|+|+.+|+++.+..+...
T Consensus 3 ~~~v~~----im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~-~~~Givt~~dl~~~~~~~~~~---------- 65 (133)
T 2ef7_A 3 EEIVKE----YMKTQ-VISVTKDAKLNDIAKVMTEKNIGSVIVVD-GN-KPVGIITERDIVKAIGKGKSL---------- 65 (133)
T ss_dssp CCBGGG----TSBCS-CCEEETTCBHHHHHHHHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHHHTTCCT----------
T ss_pred cccHHH----hccCC-CEEECCCCcHHHHHHHHHhcCCCEEEEEE-CC-EEEEEEcHHHHHHHHhcCCCc----------
Confidence 346677 88875 89999999999999999999999999999 67 999999999999886543110
Q ss_pred HHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCC
Q 014353 334 FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPP 407 (426)
Q Consensus 334 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~ 407 (426)
..++.++|.+++.++++++++.++++.|.+++++++||+|++|+++|+||..||++.+.++..
T Consensus 66 -----------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~~ 128 (133)
T 2ef7_A 66 -----------ETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFE 128 (133)
T ss_dssp -----------TCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHC-
T ss_pred -----------ccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHHH
Confidence 114455666689999999999999999999999999999988999999999999999987654
No 29
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.73 E-value=6.6e-17 Score=135.47 Aligned_cols=127 Identities=19% Similarity=0.317 Sum_probs=107.4
Q ss_pred cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH-HhhCCccccccccccHH
Q 014353 254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF-LLTAPEIYHDYRSITAK 332 (426)
Q Consensus 254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~-~~~~~~~~~~~~~~~~~ 332 (426)
..++++ +|.++ ++++.+++++.++++.|.+++++++||+|++| +++|+||.+|+++ ++..+. .
T Consensus 6 ~~~v~~----im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~~-~--------- 69 (138)
T 2yzi_A 6 KAPIKV----YMTKK-LLGVKPSTSVQEASRLMMEFDVGSLVVINDDG-NVVGFFTKSDIIRRVIVPGL-P--------- 69 (138)
T ss_dssp TSBGGG----TCBCC-CCEECTTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHTTTTCC-C---------
T ss_pred hhhHHH----HhcCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEeHHHHHHHHHhcCC-c---------
Confidence 456777 78764 99999999999999999999999999999877 9999999999984 433221 0
Q ss_pred HHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q 014353 333 NFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG 408 (426)
Q Consensus 333 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~ 408 (426)
...++.++|.+++.++++++++.++++.|.+++++++ |+|++|+++|+||..||++.+.++...
T Consensus 70 -----------~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~~~~ 133 (138)
T 2yzi_A 70 -----------YDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRRLET 133 (138)
T ss_dssp -----------TTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCCSCC
T ss_pred -----------ccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHHHHh
Confidence 0114455666799999999999999999999999999 999889999999999999999877554
No 30
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.72 E-value=3.8e-17 Score=151.03 Aligned_cols=206 Identities=16% Similarity=0.178 Sum_probs=131.3
Q ss_pred ccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhh-------
Q 014353 178 NTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFE------- 250 (426)
Q Consensus 178 ~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~------- 250 (426)
..+++++|.. ++.++.+++++.+++..|.+++++++||+| ++|+++|++|..|+++++..........
T Consensus 6 ~~~v~~im~~----~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd-~~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 3l2b_A 6 KLKVEDLEMD----KIAPLAPEVSLKMAWNIMRDKNLKSIPVAD-GNNHLLGMLSTSNITATYMDIWDSNILAKSATSLD 80 (245)
T ss_dssp CCBGGGSCCB----CCCCBCTTCBHHHHHHHHHHTTCSEEEEEC-TTCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHH
T ss_pred cCcHHHhcCC----CCcEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHH
Confidence 4579999987 888999999999999999999999999999 4799999999999999885432111000
Q ss_pred h----h--------------------ccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEE
Q 014353 251 S----W--------------------GKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVG 306 (426)
Q Consensus 251 ~----~--------------------~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvG 306 (426)
. + .......+ ...+.++.++.+ .+ -.++.+.+.+.++++++++++.. +
T Consensus 81 ~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~-~~~~~~~~ivIv-gd--r~~~~~~~i~~~~~~liit~~~~--~-- 152 (245)
T 3l2b_A 81 NILDTLSAEAQNINEERKVFPGKVVVAAMQAESL-KEFISEGDIAIA-GD--RAEIQAELIELKVSLLIVTGGHT--P-- 152 (245)
T ss_dssp HHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGG-GGTCCTTCEEEE-CS--CHHHHHHHHHTTCSEEEECTTCC--C--
T ss_pred HHHHHhCCEEEeccCCcceeeeeEEEEeCChHHH-HhcCCCCCEEEE-CC--CHHHHHHHHHcCCCEEEECCCCC--C--
Confidence 0 0 00000111 013344434444 22 36888888999999998886432 1
Q ss_pred EEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCCCCCc-CCceeecCCCCHHHHHHHHHhCCCcEEEEEcC
Q 014353 307 NISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLL-SGMVTCSRNHTIKELIHLLDSKKIHRIYVVDF 385 (426)
Q Consensus 307 iIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~ 385 (426)
..++.......+..- + ..+. +... ....+.....+.++|. +++.++++++++.+++++|.+++++++||+|+
T Consensus 153 ---~~~v~~~a~~~~~~~-i-~t~~-d~~~-~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~ 225 (245)
T 3l2b_A 153 ---SKEIIELAKKNNITV-I-TTPH-DSFT-ASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE 225 (245)
T ss_dssp ---CHHHHHHHHHHTCEE-E-ECSS-CHHH-HHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECT
T ss_pred ---CHHHHHHHHHcCCeE-E-EeCC-ChHH-HHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcC
Confidence 122222221111000 0 0000 0000 1111222224445566 69999999999999999999999999999999
Q ss_pred CCcEEEEEeHHHHHHHHH
Q 014353 386 NGNLEGVITLRDIISRLV 403 (426)
Q Consensus 386 ~~~liGvIT~~Dll~~l~ 403 (426)
+|+++|+||.+|+++...
T Consensus 226 ~~~~~Giit~~dll~~~~ 243 (245)
T 3l2b_A 226 NNKVVGSIARFHLISTHK 243 (245)
T ss_dssp TCBEEEEEECC-------
T ss_pred CCeEEEEEEHHHhhchhh
Confidence 999999999999998643
No 31
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.72 E-value=5.6e-17 Score=141.63 Aligned_cols=148 Identities=15% Similarity=0.219 Sum_probs=107.0
Q ss_pred cccccchhhhcCCC-----CChhHH--Hhhh--hccCCccCCCCCC--CceEEEeCCCCHHHHHHHHHHCCcccceeeec
Q 014353 27 GMKVEDLWDVLEPQ-----LSPTEK--LNAC--FESIPVEAFPPPP--SQVIEIKSDTSLAEAVEILAQHRILSAPVVDV 95 (426)
Q Consensus 27 ~~~~~~~~~~l~~~-----~~~~~~--~~~~--~~~~~~~~~~~~~--~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~ 95 (426)
.+|.++|..+++.. ++.++. ++.. |..+++.++ |+ ++++++++++++.+|+++|.++++..+||+|.
T Consensus 6 ~~t~~el~~l~~~~~~~g~l~~~e~~~i~~~~~l~~~~v~di--M~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~ 83 (172)
T 3lhh_A 6 NVTQEDIQAMLQEGSSAGVIEHNEHAMVKNVFRLDERTISSL--MVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRN 83 (172)
T ss_dssp -------------------------------------CTTTT--SEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESS
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCCHHHh--CccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeC
Confidence 46788888887553 555332 3333 557888988 87 88999999999999999999999999999998
Q ss_pred CCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhccccccc
Q 014353 96 DAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEF 175 (426)
Q Consensus 96 ~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 175 (426)
+. ++++|+||..||+.++...
T Consensus 84 ~~-------~~lvGivt~~dl~~~~~~~---------------------------------------------------- 104 (172)
T 3lhh_A 84 NV-------DDMVGIISAKQLLSESIAG---------------------------------------------------- 104 (172)
T ss_dssp ST-------TSEEEEEEHHHHHHHHHTT----------------------------------------------------
T ss_pred CC-------CeEEEEEEHHHHHHHHhhc----------------------------------------------------
Confidence 64 7999999999998765421
Q ss_pred ccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353 176 YKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAE 242 (426)
Q Consensus 176 ~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~ 242 (426)
...++.++| . ++.++.+++++.+++..|.+++++++||+| ++|+++|+||..|+++.+..
T Consensus 105 -~~~~v~~im-~----~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~g~lvGiit~~Dil~~l~~ 164 (172)
T 3lhh_A 105 -ERLELVDLV-K----NCNFVPNSLSGMELLEHFRTTGSQMVFVVD-EYGDLKGLVTLQDMMDALTG 164 (172)
T ss_dssp -CCCCGGGGC-B----CCEEEETTCCHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHT
T ss_pred -CcccHHHHh-c----CCeEeCCCCCHHHHHHHHHHcCCeEEEEEe-CCCCEEEEeeHHHHHHHHhC
Confidence 134688899 5 889999999999999999999999999999 47999999999999999864
No 32
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.72 E-value=1.2e-16 Score=133.72 Aligned_cols=125 Identities=28% Similarity=0.432 Sum_probs=104.9
Q ss_pred cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHH-HHHhhCCccccccccccHH
Q 014353 254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI-QFLLTAPEIYHDYRSITAK 332 (426)
Q Consensus 254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl-~~~~~~~~~~~~~~~~~~~ 332 (426)
..++++ +|+++ ++++.+++++.++++.|.+++++++||+|++| +++|+|+.+|+ .+.+..+.. ..
T Consensus 7 ~~~v~~----im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~~~----~~---- 72 (138)
T 2p9m_A 7 NIKVKD----VMTKN-VITAKRHEGVVEAFEKMLKYKISSLPVIDDEN-KVIGIVTTTDIGYNLIRDKYT----LE---- 72 (138)
T ss_dssp TCBGGG----TSBCS-CCCEETTSBHHHHHHHHHHHTCCEEEEECTTC-BEEEEEEHHHHHHHHTTTCCC----SS----
T ss_pred cCCHHH----hhcCC-ceEECCCCcHHHHHHHHHHCCCcEEEEECCCC-eEEEEEEHHHHHHHHHhhccc----CC----
Confidence 456777 78764 89999999999999999999999999999887 99999999999 887643211 01
Q ss_pred HHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCC-----CcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 333 NFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKK-----IHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 333 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~-----~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
.++.++| .+++.++++++++.++++.|.+++ ++++||+|++|+++|+||..||++.+.++
T Consensus 73 ---~~v~~~m----------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~ 137 (138)
T 2p9m_A 73 ---TTIGDVM----------TKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISKI 137 (138)
T ss_dssp ---CBHHHHS----------CSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred ---cCHHHHh----------CCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHhh
Confidence 1244444 348899999999999999999999 99999999889999999999999998765
No 33
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.71 E-value=4.9e-17 Score=146.12 Aligned_cols=125 Identities=19% Similarity=0.242 Sum_probs=107.7
Q ss_pred hccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhc---CCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccc
Q 014353 252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRK---KIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRS 328 (426)
Q Consensus 252 ~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~---~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~ 328 (426)
+...++++ +|+++ ++++.+++++.++++.|.++ +++.+||+|+++ +++|+||.+|++... .
T Consensus 51 ~~~~~v~~----iM~~~-~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~-~lvGivt~~dll~~~--~-------- 114 (205)
T 3kxr_A 51 YSENEIGR----YTDHQ-MLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEAD-KYLGTVRRYDIFKHE--P-------- 114 (205)
T ss_dssp SCTTCGGG----GCBCC-CCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTC-BEEEEEEHHHHTTSC--T--------
T ss_pred CCcchHHh----hccCc-eEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCC-eEEEEEEHHHHHhCC--C--------
Confidence 44567888 89885 99999999999999999987 889999999987 999999999997531 0
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q 014353 329 ITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG 408 (426)
Q Consensus 329 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~ 408 (426)
...+.++|.+++.++++++++.++++.|.+++++.+||||++|+++|+||..||++.+..+...
T Consensus 115 ----------------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e~~e 178 (205)
T 3kxr_A 115 ----------------HEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHYEA 178 (205)
T ss_dssp ----------------TSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHHHC-
T ss_pred ----------------cchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHHHHH
Confidence 1134456667899999999999999999999999999999999999999999999999766544
No 34
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.71 E-value=5.6e-17 Score=138.01 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=109.8
Q ss_pred hccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccccc
Q 014353 252 WGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT 330 (426)
Q Consensus 252 ~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~ 330 (426)
+...++++ +|.+ .+++++.+++++.+|++.|.+++++++||+|++| +++|+||.+||++.+........
T Consensus 12 l~~~~v~~----im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~-~~~Givt~~dl~~~~~~~~~~~~----- 81 (150)
T 3lqn_A 12 FQQIFVKD----LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMY-KLHGLISTAMILDGILGLERIEF----- 81 (150)
T ss_dssp HHHCBHHH----HSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHTBCSSSBCG-----
T ss_pred hhcCChhh----cccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCC-CEEEEEEHHHHHHHHHhhcccch-----
Confidence 44567777 7875 3589999999999999999999999999999888 99999999999998754321100
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCC
Q 014353 331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPP 407 (426)
Q Consensus 331 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~ 407 (426)
.. ....++.++|.+++.++.+++++.++++.|.++++ +||+|++|+++|+||.+||++++.++..
T Consensus 82 -~~---------~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~~~ 146 (150)
T 3lqn_A 82 -ER---------LEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKVR 146 (150)
T ss_dssp -GG---------GGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC-
T ss_pred -hH---------HhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHHhH
Confidence 00 01125556777799999999999999999999987 9999999999999999999999987654
No 35
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.71 E-value=9.6e-17 Score=138.15 Aligned_cols=125 Identities=19% Similarity=0.234 Sum_probs=106.4
Q ss_pred cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHH
Q 014353 254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKN 333 (426)
Q Consensus 254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~ 333 (426)
..++++ +|++ ++++.+++++.+|++.|.+++++++||+|++| +++|+||.+||++.+..+....
T Consensus 16 ~~~v~~----im~~--~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~~~~--------- 79 (159)
T 3fv6_A 16 KLQVKD----FQSI--PVVIHENVSVYDAICTMFLEDVGTLFVVDRDA-VLVGVLSRKDLLRASIGQQELT--------- 79 (159)
T ss_dssp TCBGGG----SCBC--CCEEETTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHTSCSCTT---------
T ss_pred hCCHHH----HcCC--CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCC-cEEEEEeHHHHHHHhhccCccc---------
Confidence 457777 8875 56999999999999999999999999999888 9999999999999764332110
Q ss_pred HHHHHHHHhhhcCCCCCCCcC--CceeecCCCCHHHHHHHHHhCCCcEEEEEcCCC---cEEEEEeHHHHHHHHHhC
Q 014353 334 FLTAVRKYMEEHHHEDSPLLS--GMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNG---NLEGVITLRDIISRLVHE 405 (426)
Q Consensus 334 ~~~~v~~~~~~~~~~~~~~~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~---~liGvIT~~Dll~~l~~~ 405 (426)
..++.++|.+ ++.++.+++++.+|++.|.+++++++||+|++| +++|+||.+||++++..-
T Consensus 80 -----------~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~~ 145 (159)
T 3fv6_A 80 -----------SVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSL 145 (159)
T ss_dssp -----------TCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHHH
T ss_pred -----------CcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHHH
Confidence 1144556666 889999999999999999999999999999888 999999999999999743
No 36
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.71 E-value=3.9e-17 Score=141.52 Aligned_cols=132 Identities=18% Similarity=0.327 Sum_probs=109.7
Q ss_pred hccccccccccCCccc--CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccc
Q 014353 252 WGKKKLSEIGLPIMSA--NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSI 329 (426)
Q Consensus 252 ~~~~~v~~~~~~im~~--~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~ 329 (426)
+...++++ +|.+ .+++++.+++++.+|++.|.+++++++||+|++| +++|+||.+||++.+..+..
T Consensus 21 l~~~~v~d----im~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~~------- 88 (165)
T 3fhm_A 21 GMATFVKD----LLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADG-VVLGIFTERDLVKAVAGQGA------- 88 (165)
T ss_dssp SSSCBHHH----HHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHHHHGG-------
T ss_pred hhhcCHHH----HhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHHHHHhcCC-------
Confidence 44566777 7875 3599999999999999999999999999999888 99999999999988643210
Q ss_pred cHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q 014353 330 TAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG 408 (426)
Q Consensus 330 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~ 408 (426)
.....++.++|.+++.+|.+++++.++++.|.+++++++||+|+ |+++|+||..||++++..+...
T Consensus 89 ------------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~~~~~ 154 (165)
T 3fhm_A 89 ------------ASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIGEIEA 154 (165)
T ss_dssp ------------GGGTSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTCC---
T ss_pred ------------ccccCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHHHH
Confidence 00112556677779999999999999999999999999999998 9999999999999999876554
No 37
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.71 E-value=3.6e-17 Score=139.15 Aligned_cols=138 Identities=22% Similarity=0.340 Sum_probs=104.9
Q ss_pred ccccccccCCcccC-CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHH
Q 014353 255 KKLSEIGLPIMSAN-HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKN 333 (426)
Q Consensus 255 ~~v~~~~~~im~~~-~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~ 333 (426)
.++++ +|.+. +++++.+++++.++++.|.+++++++||+|+++ +++|+||.+|++++...+..+. .
T Consensus 5 ~~v~~----im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-~~~G~vt~~dl~~~~~~~~~~~--------~ 71 (152)
T 4gqw_A 5 YTVGE----FMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDW-KLVGLVSDYDLLALDSGDSTWK--------T 71 (152)
T ss_dssp SBGGG----TSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTC-BEEEEEEHHHHTTCC----CCH--------H
T ss_pred EEhhh----ccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCC-eEEEEEEHHHHHHhhcccCccc--------c
Confidence 45666 78762 489999999999999999999999999999987 9999999999987643221110 0
Q ss_pred HHHHHHHHh--hhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353 334 FLTAVRKYM--EEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP 406 (426)
Q Consensus 334 ~~~~v~~~~--~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~ 406 (426)
+. ...... ....++.++|.+++.++.+++++.+++++|.+++++++||+|++|+++|+||.+||++.+....
T Consensus 72 ~~-~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~~ 145 (152)
T 4gqw_A 72 FN-AVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIK 145 (152)
T ss_dssp HH-HHHTC-----CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC--
T ss_pred hH-HHHHHHHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhcc
Confidence 00 000000 0011333445558899999999999999999999999999999999999999999999998654
No 38
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.71 E-value=1.4e-16 Score=134.28 Aligned_cols=137 Identities=21% Similarity=0.468 Sum_probs=105.3
Q ss_pred cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHH
Q 014353 254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKN 333 (426)
Q Consensus 254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~ 333 (426)
..+++++.. +|.. +++++.+++++.++++.|.+++++++||+|++| +++|+|+.+|+++.+..+. + .....
T Consensus 7 ~~~v~~~~~-~~~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~-~-~~~~~---- 77 (144)
T 2nyc_A 7 KIPIGDLNI-ITQD-NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG-YLINVYEAYDVLGLIKGGI-Y-NDLSL---- 77 (144)
T ss_dssp GSBGGGSSC-CBCS-SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHHTC------CCS----
T ss_pred hcchhhcCC-CCCC-CceEECCCCcHHHHHHHHHHcCcceeeEEcCCC-cEEEEEcHHHHHHHhcccc-c-ccCCc----
Confidence 456666543 5665 499999999999999999999999999999887 9999999999998865431 1 01112
Q ss_pred HHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353 334 FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP 406 (426)
Q Consensus 334 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~ 406 (426)
++.++|.... . -..++.++.+++++.++++.|.+++++++||+|++|+++|+||.+||++.+..+.
T Consensus 78 ---~v~~~m~~~~--~--~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~~ 143 (144)
T 2nyc_A 78 ---SVGEALMRRS--D--DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLGS 143 (144)
T ss_dssp ---BHHHHHHHCC----------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHC-
T ss_pred ---cHHHHHhcCc--c--ccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHhcc
Confidence 2444443200 0 0015789999999999999999999999999998899999999999999998653
No 39
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.71 E-value=1.4e-16 Score=135.28 Aligned_cols=124 Identities=16% Similarity=0.256 Sum_probs=109.8
Q ss_pred hccCCccCCCCCCC--ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCC
Q 014353 51 FESIPVEAFPPPPS--QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPS 128 (426)
Q Consensus 51 ~~~~~~~~~~~~~~--~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~ 128 (426)
+..++++++ |++ +++++++++++.+|+++|.++++..+||+|++. ++++|+||..|++..+....
T Consensus 20 l~~~~v~di--M~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~-------~~lvGivt~~dl~~~~~~~~---- 86 (148)
T 3lv9_A 20 FEEKKIREI--MVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNK-------DDILGFVHIRDLYNQKINEN---- 86 (148)
T ss_dssp GGTCBGGGT--SEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSST-------TSEEEEEEHHHHHHHHHHHS----
T ss_pred cCCCCHHHc--cccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCC-------CcEEEEEEHHHHHHHHhcCC----
Confidence 567889998 876 999999999999999999999999999999863 69999999999987755321
Q ss_pred CCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHH
Q 014353 129 PRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLL 208 (426)
Q Consensus 129 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~ 208 (426)
..++.++| . ++.++.+++++.+++..
T Consensus 87 -------------------------------------------------~~~v~~~m-~----~~~~v~~~~~l~~~~~~ 112 (148)
T 3lv9_A 87 -------------------------------------------------KIELEEIL-R----DIIYISENLTIDKALER 112 (148)
T ss_dssp -------------------------------------------------CCCGGGTC-B----CCEEEETTSBHHHHHHH
T ss_pred -------------------------------------------------CccHHHhc-C----CCeEECCCCCHHHHHHH
Confidence 34678888 5 88899999999999999
Q ss_pred HhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353 209 LSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAE 242 (426)
Q Consensus 209 l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~ 242 (426)
|.+++++++||+| ++|+++|+||..|+++.+..
T Consensus 113 m~~~~~~~l~Vvd-~~g~~~Giit~~dil~~l~~ 145 (148)
T 3lv9_A 113 IRKEKLQLAIVVD-EYGGTSGVVTIEDILEEIVG 145 (148)
T ss_dssp HHHHTCSEEEEEC-TTSSEEEEEEHHHHHHHHHH
T ss_pred HHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence 9999999999999 47999999999999998853
No 40
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.70 E-value=1.2e-16 Score=131.31 Aligned_cols=118 Identities=20% Similarity=0.237 Sum_probs=99.3
Q ss_pred CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME 343 (426)
Q Consensus 264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 343 (426)
+|.++ ++++.+++++.++++.|.+++++++||+| +| +++|+|+.+|+++.+..+... . ..++.++|
T Consensus 6 ~m~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~-~~~G~it~~dl~~~~~~~~~~---~-------~~~v~~~m- 71 (125)
T 1pbj_A 6 VMVTD-VDTIDITASLEDVLRNYVENAKGSSVVVK-EG-VRVGIVTTWDVLEAIAEGDDL---A-------EVKVWEVM- 71 (125)
T ss_dssp HCBCS-CCEEETTCBHHHHHHHHHHHCCCEEEEEE-TT-EEEEEEEHHHHHHHHHHTCCT---T-------TSBHHHHC-
T ss_pred hcCCC-ceEECCCCcHHHHHHHHHHcCCCEEEEEe-CC-eeEEEEeHHHHHHHHhcCCcc---c-------ccCHHHHc-
Confidence 77764 99999999999999999999999999999 67 999999999999876543210 0 11244444
Q ss_pred hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
.+++.++.+++++.++++.|.+++++++||+|+ |+++|+||.+||++++.++
T Consensus 72 ---------~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~~ 123 (125)
T 1pbj_A 72 ---------ERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMAK 123 (125)
T ss_dssp ---------BCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC--
T ss_pred ---------CCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHhc
Confidence 448899999999999999999999999999998 9999999999999998754
No 41
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.70 E-value=4.5e-17 Score=139.59 Aligned_cols=136 Identities=19% Similarity=0.247 Sum_probs=109.5
Q ss_pred hccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccccc
Q 014353 252 WGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT 330 (426)
Q Consensus 252 ~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~ 330 (426)
+...++++ +|++ .+++++.+++++.++++.|.+++++++||+|++| +++|+||.+||++.+..+....
T Consensus 12 l~~~~v~d----im~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~-~~~Giit~~dl~~~~~~~~~~~------ 80 (156)
T 3ctu_A 12 FLLGQEET----FLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEK-QFVGTIGLRDIMAYQMEHDLSQ------ 80 (156)
T ss_dssp HHHTTGGG----GEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC-C-BEEEEEEHHHHHHHHHHHTCCH------
T ss_pred HHHHHHHH----HcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECCCC-EEEEEEcHHHHHHHHHhccccc------
Confidence 33466777 7885 4589999999999999999999999999999888 9999999999998865321100
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCcc
Q 014353 331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYF 410 (426)
Q Consensus 331 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~~ 410 (426)
... ...++.++|.+++.++.+++++.+|++.|.+++ ++||+|++|+++|+||.+||++++.+....+.
T Consensus 81 --------~~~--~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~~g~~~Giit~~dil~~l~~~~~~~~ 148 (156)
T 3ctu_A 81 --------EIM--ADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNALLHDFS 148 (156)
T ss_dssp --------HHH--TTSBGGGGCBCSCCCBCSSCCHHHHHHHTTTSS--EEEEECTTSBEEEEEETTHHHHHHHHHSCC--
T ss_pred --------ccc--ccCcHHHhccCCceeeCCCCcHHHHHHHHHHcC--eEEEEcCCCeEEEEEEHHHHHHHHHHHHHhhc
Confidence 000 012556677779999999999999999999987 79999989999999999999999987766544
No 42
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.70 E-value=1.1e-16 Score=132.84 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=104.9
Q ss_pred hccCCccCCCCCC--CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCC
Q 014353 51 FESIPVEAFPPPP--SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPS 128 (426)
Q Consensus 51 ~~~~~~~~~~~~~--~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~ 128 (426)
|+.++++++ |+ .+++++++++++.+|+++|.++++.++||+|++. ++++|+||..|++..+....
T Consensus 3 l~~~~v~~i--M~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~-------~~~~Givt~~dl~~~~~~~~---- 69 (130)
T 3i8n_A 3 AQDVPVTQV--MTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQK-------DNIIGFVHRLELFKMQQSGS---- 69 (130)
T ss_dssp ----CCTTT--SCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSST-------TCEEEECCHHHHHHHHHTTT----
T ss_pred cCcCCHhhC--CCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCC-------CcEEEEEEHHHHHHHHhcCC----
Confidence 567888888 75 6688999999999999999999999999999754 79999999999987654210
Q ss_pred CCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHH
Q 014353 129 PRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLL 208 (426)
Q Consensus 129 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~ 208 (426)
...++.++|. ++.++.+++++.+++..
T Consensus 70 ------------------------------------------------~~~~v~~~m~-----~~~~v~~~~~l~~~~~~ 96 (130)
T 3i8n_A 70 ------------------------------------------------GQKQLGAVMR-----PIQVVLNNTALPKVFDQ 96 (130)
T ss_dssp ------------------------------------------------TTSBHHHHSE-----ECCEEETTSCHHHHHHH
T ss_pred ------------------------------------------------CcCCHHHHhc-----CCcCcCCCCcHHHHHHH
Confidence 1346888885 66799999999999999
Q ss_pred HhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHH
Q 014353 209 LSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLA 241 (426)
Q Consensus 209 l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~ 241 (426)
|.+++++++||+| ++|+++|++|..|+++.+.
T Consensus 97 m~~~~~~~~~Vvd-~~g~~vGivt~~dil~~l~ 128 (130)
T 3i8n_A 97 MMTHRLQLALVVD-EYGTVLGLVTLEDIFEHLV 128 (130)
T ss_dssp HHHHTCCEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred HHHcCCeEEEEEc-CCCCEEEEEEHHHHHHHHc
Confidence 9999999999999 4799999999999999875
No 43
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.70 E-value=1.9e-16 Score=132.16 Aligned_cols=124 Identities=17% Similarity=0.321 Sum_probs=102.6
Q ss_pred cccccccCCcc---cCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHH
Q 014353 256 KLSEIGLPIMS---ANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAK 332 (426)
Q Consensus 256 ~v~~~~~~im~---~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~ 332 (426)
++++ +|+ . +++++.+++++.++++.|.+++++++||+| +| +++|+|+.+|+++.+...+..
T Consensus 7 ~v~~----im~~~~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~-~~~Givt~~dl~~~~~~~~~~--------- 70 (135)
T 2rc3_A 7 TVKH----LLQEKGH-TVVAIGPDDSVFNAMQKMAADNIGALLVMK-DE-KLVGILTERDFSRKSYLLDKP--------- 70 (135)
T ss_dssp BHHH----HHHHHCC-CCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHGGGSSSC---------
T ss_pred eHHH----HHhcCCC-CcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CC-EEEEEEehHHHHHHHHHcCCC---------
Confidence 4566 776 4 489999999999999999999999999999 67 999999999999643322100
Q ss_pred HHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353 333 NFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP 406 (426)
Q Consensus 333 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~ 406 (426)
.....+.++|.+++.++++++++.++++.|.+++++++||+| +|+++|+||.+||++++.++.
T Consensus 71 ----------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~~~ 133 (135)
T 2rc3_A 71 ----------VKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAISQH 133 (135)
T ss_dssp ----------GGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC--
T ss_pred ----------cccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHhcc
Confidence 001245566777999999999999999999999999999999 799999999999999987653
No 44
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.69 E-value=2.5e-16 Score=128.93 Aligned_cols=119 Identities=32% Similarity=0.488 Sum_probs=106.3
Q ss_pred chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccc
Q 014353 180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSE 259 (426)
Q Consensus 180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~ 259 (426)
+++++|.+ ++.++.+++++.+++..|.+++.+++||+| ++++++|+++..|+++++... ..++.+
T Consensus 2 ~v~~im~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~~G~vt~~dl~~~~~~~----------~~~v~~ 66 (122)
T 3kpb_A 2 LVKDILSK----PPITAHSNISIMEAAKILIKHNINHLPIVD-EHGKLVGIITSWDIAKALAQN----------KKTIEE 66 (122)
T ss_dssp BHHHHCCS----CCCCEETTSBHHHHHHHHHHHTCSCEEEEC-TTSBEEEEECHHHHHHHHHTT----------CCBGGG
T ss_pred chHHhhCC----CCEEeCCCCcHHHHHHHHHHcCCCeEEEEC-CCCCEEEEEEHHHHHHHHHhc----------ccCHHH
Confidence 57889987 888999999999999999999999999999 489999999999999988643 236777
Q ss_pred cccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353 260 IGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA 319 (426)
Q Consensus 260 ~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~ 319 (426)
+|.++ ++++.+++++.++++.|.+++++.+||+|++| +++|+||.+||++++..
T Consensus 67 ----~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g-~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 67 ----IMTRN-VITAHEDEPVDHVAIKMSKYNISGVPVVDDYR-RVVGIVTSEDISRLFGG 120 (122)
T ss_dssp ----TSBSS-CCCEETTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHC-
T ss_pred ----HhcCC-CeEECCCCCHHHHHHHHHHhCCCeEEEECCCC-CEEEEEeHHHHHHHhhc
Confidence 78764 89999999999999999999999999999988 99999999999998653
No 45
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.69 E-value=9.6e-17 Score=137.84 Aligned_cols=127 Identities=20% Similarity=0.352 Sum_probs=105.0
Q ss_pred CccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCC
Q 014353 55 PVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSP 134 (426)
Q Consensus 55 ~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~ 134 (426)
.+.++-.+..+++++++++|+.+|+++|.++++.++||+|++ ++++|+||..|++.++.....
T Consensus 16 ~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~--------~~lvGiit~~Di~~~~~~~~~--------- 78 (156)
T 3k6e_A 16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE--------KQFVGTIGLRDIMAYQMEHDL--------- 78 (156)
T ss_dssp TGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC---------CBEEEEEEHHHHHHHHHHHTC---------
T ss_pred cHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCC--------CcEEEEEEecchhhhhhhccc---------
Confidence 344442225689999999999999999999999999999987 899999999999988765421
Q ss_pred chhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCC
Q 014353 135 SSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKM 214 (426)
Q Consensus 135 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~ 214 (426)
........++.++|.+ ++.++.+++++.+++..|.+++
T Consensus 79 -------------------------------------~~~~~~~~~v~~im~~----~~~~v~~~~~l~~~~~~m~~~~- 116 (156)
T 3k6e_A 79 -------------------------------------SQEIMADTDIVHMTKT----DVAVVSPDFTITEVLHKLVDES- 116 (156)
T ss_dssp -------------------------------------CHHHHTTSBGGGTCBC----SCCCBCTTCCHHHHHHHTTTSS-
T ss_pred -------------------------------------ccccccccCHHHhhcC----CceecccccHHHHHHHHHHHcC-
Confidence 0112345679999987 8999999999999999998765
Q ss_pred cEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353 215 KSIPVVDLGEGTIDNIITQSSVIHMLAE 242 (426)
Q Consensus 215 ~~ipVvd~~~~~l~Giis~~Dl~~~l~~ 242 (426)
.+||+| ++|+++|+||..|+++++..
T Consensus 117 -~lpVVd-~~g~l~GiiT~~Dil~~~~~ 142 (156)
T 3k6e_A 117 -FLPVVD-AEGIFQGIITRKSILKAVNA 142 (156)
T ss_dssp -EEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred -CeEEEe-cCCEEEEEEEHHHHHHHHHH
Confidence 499999 58999999999999999854
No 46
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.69 E-value=7.5e-17 Score=134.24 Aligned_cols=124 Identities=23% Similarity=0.363 Sum_probs=101.9
Q ss_pred ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH-HhhCCccccccccccHHH
Q 014353 255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF-LLTAPEIYHDYRSITAKN 333 (426)
Q Consensus 255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~-~~~~~~~~~~~~~~~~~~ 333 (426)
.++++ +|.++ ++++.+++++.++++.|.+++++++||+|+++ +++|+|+.+|+++ ++..+... .
T Consensus 8 ~~v~~----im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~~~~---~------ 72 (133)
T 1y5h_A 8 TTARD----IMNAG-VTCVGEHETLTAAAQYMREHDIGALPICGDDD-RLHGMLTDRDIVIKGLAAGLDP---N------ 72 (133)
T ss_dssp CCHHH----HSEET-CCCEETTSBHHHHHHHHHHHTCSEEEEECGGG-BEEEEEEHHHHHHTTGGGTCCT---T------
T ss_pred cCHHH----HhcCC-ceEeCCCCCHHHHHHHHHHhCCCeEEEECCCC-eEEEEEeHHHHHHHHHhcCCCc---c------
Confidence 45666 78764 89999999999999999999999999998877 9999999999984 54332110 0
Q ss_pred HHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 334 FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 334 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
..++.++|.. ++.++++++++.++++.|.+++++++||+|+ |+++|+||.+||++++.++
T Consensus 73 -~~~v~~~m~~----------~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l~~~ 132 (133)
T 1y5h_A 73 -TATAGELARD----------SIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHLPEH 132 (133)
T ss_dssp -TSBHHHHHTT----------CCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTCC--
T ss_pred -ccCHHHHhcC----------CCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHhc
Confidence 1234555543 8899999999999999999999999999997 9999999999999987653
No 47
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.69 E-value=3.7e-16 Score=131.48 Aligned_cols=123 Identities=17% Similarity=0.208 Sum_probs=103.9
Q ss_pred ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCC-CeEEEEEeHHHHHHHhhCCccccccccccHHH
Q 014353 255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGG-NKAVGNISLRDIQFLLTAPEIYHDYRSITAKN 333 (426)
Q Consensus 255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~ 333 (426)
.++++ +|.++ ++++.+++++.++++.|.+++++++||+|+++ ++++|+||.+|+++.+..+..
T Consensus 5 ~~v~~----im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~----------- 68 (141)
T 2rih_A 5 IRTSE----LLKRP-PVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD----------- 68 (141)
T ss_dssp CBGGG----GCCSC-CEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCC-----------
T ss_pred eEHHH----HhcCC-CeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCC-----------
Confidence 45666 78864 99999999999999999999999999999742 179999999999988654310
Q ss_pred HHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353 334 FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH 404 (426)
Q Consensus 334 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~ 404 (426)
...++.++|.+++.+++++ ++.++++.|.+++++++||+|++|+++|+||.+||++.+..
T Consensus 69 ----------~~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~ 128 (141)
T 2rih_A 69 ----------LDGPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI 128 (141)
T ss_dssp ----------TTSBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred ----------CCCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHHH
Confidence 0124556677799999999 99999999999999999999988999999999999877653
No 48
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.69 E-value=4e-16 Score=133.65 Aligned_cols=134 Identities=13% Similarity=0.200 Sum_probs=109.7
Q ss_pred ccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccH
Q 014353 253 GKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITA 331 (426)
Q Consensus 253 ~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~ 331 (426)
...++++ +|.+ .+++++.+++++.++++.|.+++++++||+|++| +++|+||.+|+++.+..+..+..
T Consensus 9 ~~~~v~~----im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~-~~~Givt~~dl~~~~~~~~~~~~------ 77 (157)
T 2emq_A 9 MQMTVKP----FLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSY-KLHGLISMTMMMDAILGLERIEF------ 77 (157)
T ss_dssp -CCBSTT----TCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTC-CEEEEEEHHHHHHHSBCSSSBCG------
T ss_pred hhCcHHh----hccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCC-CEEEEeeHHHHHHHHhcccccch------
Confidence 3456777 7875 2489999999999999999999999999999887 99999999999988654321110
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q 014353 332 KNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG 408 (426)
Q Consensus 332 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~ 408 (426)
.. ....++.++|.+++.++++++++.++++.|.++++ +||+|++|+++|+||.+||++.+......
T Consensus 78 -------~~--~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~~~~ 143 (157)
T 2emq_A 78 -------ER--LETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQLHR 143 (157)
T ss_dssp -------GG--GGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHTTCC
T ss_pred -------HH--hcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHHhhc
Confidence 00 01124556777799999999999999999999988 99999889999999999999999887654
No 49
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.69 E-value=1.2e-16 Score=135.90 Aligned_cols=145 Identities=12% Similarity=0.140 Sum_probs=106.9
Q ss_pred chhhccccccchhhhcCCCCChhHHHhhhhccCCccCCCCCCC--ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCC
Q 014353 22 PEAQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFPPPPS--QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPE 99 (426)
Q Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~ 99 (426)
+.++-||+.+|...... - ..+.+.+ .++++++ |.+ +++++++++++.+|+++|.++++..+||+|++
T Consensus 2 ~~~~~~f~~~~~~~~~~--~---~~l~~~l-~~~v~di--m~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~--- 70 (149)
T 3k2v_A 2 NAEARGFTAEDFALSHP--G---GALGRKL-LLRVNDI--MHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDD--- 70 (149)
T ss_dssp -----------------------CHHHHHT-TSBGGGT--SBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT---
T ss_pred cccccCCCHHHhhhcCC--C---chhchhc-ccCHHHH--hcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC---
Confidence 34566888776543221 1 1233222 3788888 887 99999999999999999999999999999988
Q ss_pred CcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhccccccccccc
Q 014353 100 DASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNT 179 (426)
Q Consensus 100 ~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 179 (426)
|+++|+||..||++.+.... .....
T Consensus 71 -----~~~~Givt~~dl~~~~~~~~--------------------------------------------------~~~~~ 95 (149)
T 3k2v_A 71 -----MNIIGIFTDGDLRRVFDTGV--------------------------------------------------DMRDA 95 (149)
T ss_dssp -----CBEEEEEEHHHHHHHHCSSS--------------------------------------------------CCTTC
T ss_pred -----CcEEEEecHHHHHHHHhcCC--------------------------------------------------CcccC
Confidence 89999999999987654211 12345
Q ss_pred chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHH
Q 014353 180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIH 238 (426)
Q Consensus 180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~ 238 (426)
++.++|.. ++.++.+++++.+++..|.+++++++||+|. + +++|+||..|+++
T Consensus 96 ~v~~~m~~----~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~-~~~Giit~~dil~ 148 (149)
T 3k2v_A 96 SIADVMTR----GGIRIRPGTLAVDALNLMQSRHITCVLVADG-D-HLLGVVHMHDLLR 148 (149)
T ss_dssp BHHHHSEE----SCCEECTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHTC
T ss_pred cHHHHcCC----CCeEECCCCCHHHHHHHHHHcCCCEEEEecC-C-EEEEEEEHHHhhc
Confidence 78999987 8889999999999999999999999999993 4 9999999999864
No 50
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.69 E-value=9.8e-17 Score=137.71 Aligned_cols=120 Identities=16% Similarity=0.316 Sum_probs=101.5
Q ss_pred hccccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccccc
Q 014353 252 WGKKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT 330 (426)
Q Consensus 252 ~~~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~ 330 (426)
+...++++ +|++ .+++++.+++++.++++.|.+++++++||+|+++++++|+||.+|+++.+..+. .
T Consensus 35 l~~~~v~d----iM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~------~-- 102 (156)
T 3oi8_A 35 FSDLEVRD----AMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNPE------Q-- 102 (156)
T ss_dssp HTTCBGGG----TCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCGG------G--
T ss_pred cCCCCHhh----eeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcCC------c--
Confidence 44567888 8986 248999999999999999999999999999986349999999999998754320 1
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHH
Q 014353 331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDII 399 (426)
Q Consensus 331 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll 399 (426)
.++.++| . ++.++++++++.+|++.|.+++++++||+|++|+++|+||.+||+
T Consensus 103 -----~~v~~im----------~-~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil 155 (156)
T 3oi8_A 103 -----FHLKSIL----------R-PAVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII 155 (156)
T ss_dssp -----CCHHHHC----------B-CCCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred -----ccHHHHc----------C-CCEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence 1244444 2 578999999999999999999999999999999999999999986
No 51
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.69 E-value=1.6e-16 Score=143.67 Aligned_cols=163 Identities=13% Similarity=0.169 Sum_probs=104.0
Q ss_pred cCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCC
Q 014353 53 SIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSS 132 (426)
Q Consensus 53 ~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~ 132 (426)
.-++..+ |.++++++++++|+.+|+++|.++++..+||+|++ ++++|+||..|+...+
T Consensus 12 ~~~~~~~--~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~--------~~l~Givt~~dl~~~~------------ 69 (213)
T 1vr9_A 12 HMKVKKW--VTQDFPMVEESATVRECLHRMRQYQTNECIVKDRE--------GHFRGVVNKEDLLDLD------------ 69 (213)
T ss_dssp -CBGGGG--CBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT--------SBEEEEEEGGGGTTSC------------
T ss_pred ccCHHHh--hcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCC--------CEEEEEEEHHHHHhhc------------
Confidence 3445555 78899999999999999999999999999999987 8999999999995210
Q ss_pred CCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhc
Q 014353 133 SPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKY 212 (426)
Q Consensus 133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~ 212 (426)
...++.++|.+ ++.++.+++++.+++..|.++
T Consensus 70 --------------------------------------------~~~~v~~im~~----~~~~v~~~~~l~~a~~~m~~~ 101 (213)
T 1vr9_A 70 --------------------------------------------LDSSVFNKVSL----PDFFVHEEDNITHALLLFLEH 101 (213)
T ss_dssp --------------------------------------------TTSBSGGGCBC----TTCCEETTSBHHHHHHHHHHC
T ss_pred --------------------------------------------CCCcHHHHccC----CCEEECCCCcHHHHHHHHHHh
Confidence 12368889986 888999999999999999999
Q ss_pred CCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCC
Q 014353 213 KMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIG 292 (426)
Q Consensus 213 ~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~ 292 (426)
+++++||+| ++++++|++|..|+++.+..... ..+ .+..-.+.+.....++.++.+.|.+++++
T Consensus 102 ~~~~lpVvd-~~g~lvGiit~~Dil~~~~~~~~-----------~~~----~~~~l~~~~~~~~~~l~~~~~~l~~~~~~ 165 (213)
T 1vr9_A 102 QEPYLPVVD-EEMRLKGAVSLHDFLEALIEALA-----------MDV----PGIRFSVLLEDKPGELRKVVDALALSNIN 165 (213)
T ss_dssp CCSEEEEEC-TTCBEEEEEEHHHHHHHHHHSCC-----------------------------------------------
T ss_pred CCCEEEEEc-CCCEEEEEEEHHHHHHHHHHHhc-----------CCC----CcEEEEEEeCCCCccHHHHHHHHHHCCCc
Confidence 999999999 47999999999999998764321 111 11111011113334589999999999999
Q ss_pred eeEEEeCCC
Q 014353 293 GIPVVEKGG 301 (426)
Q Consensus 293 ~lpVvd~~~ 301 (426)
.++|++.++
T Consensus 166 ~l~V~~~~~ 174 (213)
T 1vr9_A 166 ILSVITTRS 174 (213)
T ss_dssp ---------
T ss_pred EEEEEEEec
Confidence 999987655
No 52
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.69 E-value=3.6e-16 Score=130.09 Aligned_cols=125 Identities=22% Similarity=0.407 Sum_probs=108.9
Q ss_pred ccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCC
Q 014353 52 ESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRS 131 (426)
Q Consensus 52 ~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~ 131 (426)
+.++++++ |.++++++++++++.+|++.|.++++..+||+| + ++++|+|+..|++.++....
T Consensus 2 ~~~~v~~i--m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~--------~~~~Givt~~dl~~~~~~~~------- 63 (133)
T 2ef7_A 2 EEEIVKEY--MKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-G--------NKPVGIITERDIVKAIGKGK------- 63 (133)
T ss_dssp CCCBGGGT--SBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-T--------TEEEEEEEHHHHHHHHHTTC-------
T ss_pred CcccHHHh--ccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-C--------CEEEEEEcHHHHHHHHhcCC-------
Confidence 45778888 888999999999999999999999999999999 6 89999999999987654321
Q ss_pred CCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhh
Q 014353 132 SSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSK 211 (426)
Q Consensus 132 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~ 211 (426)
....++.++|.. ++.++.+++++.+++..|.+
T Consensus 64 --------------------------------------------~~~~~v~~~~~~----~~~~v~~~~~l~~~~~~~~~ 95 (133)
T 2ef7_A 64 --------------------------------------------SLETKAEEFMTA----SLITIREDSPITGALALMRQ 95 (133)
T ss_dssp --------------------------------------------CTTCBGGGTSEE----CCCCEETTSBHHHHHHHHHH
T ss_pred --------------------------------------------CcccCHHHHcCC----CCEEECCCCCHHHHHHHHHH
Confidence 113468888876 88899999999999999999
Q ss_pred cCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhc
Q 014353 212 YKMKSIPVVDLGEGTIDNIITQSSVIHMLAEC 243 (426)
Q Consensus 212 ~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~ 243 (426)
++.+++||+| ++|+++|++|..|+++.+.+.
T Consensus 96 ~~~~~l~Vvd-~~g~~~Giit~~dll~~~~~~ 126 (133)
T 2ef7_A 96 FNIRHLPVVD-DKGNLKGIISIRDITRAIDDM 126 (133)
T ss_dssp HTCSEEEEEC-TTSCEEEEEEHHHHHHHHHHH
T ss_pred cCCCEEEEEC-CCCeEEEEEEHHHHHHHHHHH
Confidence 9999999999 479999999999999988644
No 53
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.68 E-value=2.5e-16 Score=133.93 Aligned_cols=120 Identities=18% Similarity=0.307 Sum_probs=101.3
Q ss_pred ccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHH
Q 014353 255 KKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKN 333 (426)
Q Consensus 255 ~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~ 333 (426)
.++++ +|.+ ++++++.+++++.++++.|.+++++++||+|++| +++|+||.+||++.+..+.. +.
T Consensus 28 ~~v~d----im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~~~~~---~~------ 93 (149)
T 3k2v_A 28 LRVND----IMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDM-NIIGIFTDGDLRRVFDTGVD---MR------ 93 (149)
T ss_dssp SBGGG----TSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTC-BEEEEEEHHHHHHHHCSSSC---CT------
T ss_pred cCHHH----HhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCC-cEEEEecHHHHHHHHhcCCC---cc------
Confidence 46777 8886 1389999999999999999999999999999888 99999999999998765321 11
Q ss_pred HHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 334 FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 334 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
..++.++|. +++.++++++++.++++.|.+++++++||+|++ +++|+||..||++
T Consensus 94 -~~~v~~~m~----------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~ 148 (149)
T 3k2v_A 94 -DASIADVMT----------RGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR 148 (149)
T ss_dssp -TCBHHHHSE----------ESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred -cCcHHHHcC----------CCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence 123454544 388999999999999999999999999999965 9999999999975
No 54
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.68 E-value=4.1e-16 Score=134.43 Aligned_cols=134 Identities=13% Similarity=0.215 Sum_probs=104.2
Q ss_pred cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeC--CCCeEEEEEeHHHHHHHhhCCcccc-cccccc
Q 014353 254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEK--GGNKAVGNISLRDIQFLLTAPEIYH-DYRSIT 330 (426)
Q Consensus 254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~--~~~~lvGiIs~~Dl~~~~~~~~~~~-~~~~~~ 330 (426)
..++++ +|.++ ++++.+++++.+|++.|.+++++++||+|+ +| +++|+||.+||.+.+..+.... ...
T Consensus 12 ~~~v~d----im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~-~~~Givt~~dl~~~~~~~~~~~~~~~--- 82 (164)
T 2pfi_A 12 HVRVEH----FMNHS-ITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQ-ILVGIVQRAQLVQALQAEPPSRAPGH--- 82 (164)
T ss_dssp SCBHHH----HCBCC-CCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTC-BEEEEEEHHHHHHHHHC-------CC---
T ss_pred CCCHHH----HcCCC-CeEECCCCcHHHHHHHHHhCCCCceeEEecCCCC-EEEEEEEHHHHHHHHHhhccccCCcc---
Confidence 356677 78875 899999999999999999999999999996 56 9999999999998875432100 000
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 331 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
..++.++|..... ....+.++.+++++.++++.|.+++++++||+| +|+++|+||.+||++.+.+.
T Consensus 83 ----~~~v~~~m~~~~~----~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~~ 148 (164)
T 2pfi_A 83 ----QQCLQDILARGCP----TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISNL 148 (164)
T ss_dssp ----CCBHHHHHHTTCC----CBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHHH
T ss_pred ----cchhhhhhccccc----ccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHhh
Confidence 1124455543100 011278999999999999999999999999999 79999999999999999753
No 55
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.68 E-value=1.9e-16 Score=136.46 Aligned_cols=131 Identities=20% Similarity=0.242 Sum_probs=103.2
Q ss_pred ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHH
Q 014353 255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNF 334 (426)
Q Consensus 255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~ 334 (426)
.++++ +|.++ ++++.+++++.+|++.|.+++++++||+|++| +++|+||.+||++.+.... ...........
T Consensus 5 ~~v~d----im~~~-~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~-~lvGivt~~dl~~~~~~~~--~~~~~~~~~~~ 76 (160)
T 2o16_A 5 IKVED----MMTRH-PHTLLRTHTLNDAKHLMEALDIRHVPIVDANK-KLLGIVSQRDLLAAQESSL--QRSAQGDSLAF 76 (160)
T ss_dssp CBGGG----TSEES-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHHHHC--C---------C
T ss_pred CcHHH----HhcCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEeHHHHHHHHHHhh--cccccccchhc
Confidence 45666 88775 89999999999999999999999999999887 9999999999998764210 00000000000
Q ss_pred HHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353 335 LTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH 404 (426)
Q Consensus 335 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~ 404 (426)
..++. ++|.+++.++++++++.+|++.|.+++++++||+|+ |+++|+||..||++.+..
T Consensus 77 ~~~v~----------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~ 135 (160)
T 2o16_A 77 ETPLF----------EVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAIN 135 (160)
T ss_dssp CCBHH----------HHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHH
T ss_pred ccCHH----------HHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence 11233 344558999999999999999999999999999997 999999999999998764
No 56
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.68 E-value=2.3e-16 Score=134.64 Aligned_cols=122 Identities=27% Similarity=0.469 Sum_probs=98.8
Q ss_pred CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE 348 (426)
Q Consensus 269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 348 (426)
+++++.+++++.+|++.|.+++++++||+|++| +++|+||.+|+++.+..+.. .. .. .++.++|..
T Consensus 30 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~-~~vGivt~~dl~~~~~~~~~-~~-~~-------~~v~~~m~~---- 95 (152)
T 2uv4_A 30 NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG-RVVDIYSKFDVINLAAEKTY-NN-LD-------VSVTKALQH---- 95 (152)
T ss_dssp SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTS-BEEEEEEHHHHHHHHHCSSC-CC-TT-------SBGGGGGGT----
T ss_pred CceEeCCCCcHHHHHHHHHHcCCceEeEECCCC-cEEEEEeHHHHHHHhcchhh-hh-hc-------chHHHHHhh----
Confidence 489999999999999999999999999999887 99999999999988654321 00 01 123333321
Q ss_pred CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353 349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH 404 (426)
Q Consensus 349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~ 404 (426)
...|.+++.++.+++++.++++.|.+++++++||+|++|+++|+||..||++.+..
T Consensus 96 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~l~~ 151 (152)
T 2uv4_A 96 RSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQALVL 151 (152)
T ss_dssp CCHHHHTCSEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHC-
T ss_pred hhcccCCCeEECCCCcHHHHHHHHHHcCCeEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence 01112488999999999999999999999999999988999999999999998864
No 57
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.67 E-value=3.4e-16 Score=130.05 Aligned_cols=125 Identities=15% Similarity=0.151 Sum_probs=105.5
Q ss_pred cchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcccccc
Q 014353 179 TKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLS 258 (426)
Q Consensus 179 ~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~ 258 (426)
.+++++|.+. .+++++.+++++.+++..|.+++++++||++.++++++|++|..|+++++...... ...++.
T Consensus 2 ~~v~~iM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~------~~~~v~ 73 (130)
T 3hf7_A 2 VSVNDIMVPR--NEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEF------TKEIML 73 (130)
T ss_dssp CBHHHHSEEG--GGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCC------CHHHHH
T ss_pred cCHHHhCccH--HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCcc------chhhHH
Confidence 3688999631 15789999999999999999999999999974458999999999999988643221 134566
Q ss_pred ccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353 259 EIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT 318 (426)
Q Consensus 259 ~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~ 318 (426)
+ +|. +++++.+++++.++++.|.+++++.+||+|++| +++|+||.+|+++.+.
T Consensus 74 ~----~m~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g-~lvGiit~~Dil~~l~ 126 (130)
T 3hf7_A 74 R----AAD--EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYG-DIQGLVTVEDILEEIV 126 (130)
T ss_dssp H----HSB--CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTS-CEEEEEEHHHHHHHHH
T ss_pred H----hcc--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCC-CEEEEeeHHHHHHHHh
Confidence 6 673 389999999999999999999999999999888 9999999999999864
No 58
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.67 E-value=5.7e-16 Score=132.91 Aligned_cols=142 Identities=16% Similarity=0.187 Sum_probs=106.0
Q ss_pred hccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCe-eEEEeCCCCeEEEEEeHHHHHHHhhCCcccccccccc
Q 014353 252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGG-IPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT 330 (426)
Q Consensus 252 ~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~-lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~ 330 (426)
+...++++ +|+++ ++++.+++++.+|++.|.++++++ +||+|++ +++|+||.+||++.+...- ...+. .
T Consensus 13 ~~~~~v~~----im~~~-~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~~~~-~~~~~--~ 82 (157)
T 1o50_A 13 MKVKDVCK----LISLK-PTVVEEDTPIEEIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSGFHF-FGFIP--K 82 (157)
T ss_dssp CBHHHHTT----SSCCC-CEEECTTCBHHHHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHHHHH-HCCCC---
T ss_pred hccccHhh----cccCC-CceECCCCCHHHHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHhhhH-Hhhhc--c
Confidence 33456676 88875 999999999999999999999999 9999974 8999999999998753100 00000 0
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353 331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP 406 (426)
Q Consensus 331 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~ 406 (426)
...+..... .....++.++|.+ +.++++++++.+|++.|.+++++++||+|++|+++|+||..||++.+.++.
T Consensus 83 ~~~~~~~~~--~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~~~ 155 (157)
T 1o50_A 83 EELIRSSMK--RLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGR 155 (157)
T ss_dssp ------CCC--CCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHSC
T ss_pred HHHHHHHHH--HHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHHhh
Confidence 000000000 0001133345666 899999999999999999999999999998899999999999999998764
No 59
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.67 E-value=7.1e-16 Score=132.65 Aligned_cols=134 Identities=14% Similarity=0.214 Sum_probs=113.7
Q ss_pred HHhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcC
Q 014353 46 KLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSE 125 (426)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~ 125 (426)
.+...+..++++++ |.++ +++++++++.+|+++|.++++..+||+|++ ++++|+||..||+.+++...
T Consensus 9 ~l~~~l~~~~v~~i--m~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~--------~~~~Givt~~dl~~~~~~~~- 76 (159)
T 3fv6_A 9 LLADKLKKLQVKDF--QSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDRD--------AVLVGVLSRKDLLRASIGQQ- 76 (159)
T ss_dssp HHHHHHTTCBGGGS--CBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECTT--------SCEEEEEEHHHHHHHHTSCS-
T ss_pred HHHHHHhhCCHHHH--cCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcCC--------CcEEEEEeHHHHHHHhhccC-
Confidence 47888899999999 8775 599999999999999999999999999987 89999999999988754211
Q ss_pred CCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHH
Q 014353 126 PPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTM 205 (426)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~ 205 (426)
.....++.++|... .++.++.+++++.++
T Consensus 77 -------------------------------------------------~~~~~~v~~~m~~~--~~~~~v~~~~~l~~a 105 (159)
T 3fv6_A 77 -------------------------------------------------ELTSVPVHIIMTRM--PNITVCRREDYVMDI 105 (159)
T ss_dssp -------------------------------------------------CTTTCBGGGTSEET--TSCCCBCTTSBHHHH
T ss_pred -------------------------------------------------cccCcCHHHHHcCC--CCcEEECCCCCHHHH
Confidence 12244688888731 156789999999999
Q ss_pred HHHHhhcCCcEeEEEeCCCC---eEEEEEeHHHHHHHHHhc
Q 014353 206 LLLLSKYKMKSIPVVDLGEG---TIDNIITQSSVIHMLAEC 243 (426)
Q Consensus 206 l~~l~~~~~~~ipVvd~~~~---~l~Giis~~Dl~~~l~~~ 243 (426)
+..|.+++++++||+| ++| +++|+||..|+++++.+.
T Consensus 106 ~~~m~~~~~~~lpVvd-~~g~~~~~vGiit~~dil~~l~~~ 145 (159)
T 3fv6_A 106 AKHLIEKQIDALPVIK-DTDKGFEVIGRVTKTNMTKILVSL 145 (159)
T ss_dssp HHHHHHHTCSEEEEEE-ECSSSEEEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEEe-CCCcceeEEEEEEHHHHHHHHHHH
Confidence 9999999999999999 466 999999999999998643
No 60
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.67 E-value=6.8e-17 Score=141.61 Aligned_cols=143 Identities=20% Similarity=0.304 Sum_probs=104.9
Q ss_pred cccccccCCcccC-CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCc-------ccccc-
Q 014353 256 KLSEIGLPIMSAN-HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPE-------IYHDY- 326 (426)
Q Consensus 256 ~v~~~~~~im~~~-~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~-------~~~~~- 326 (426)
++++ +|.+. +++++.+++++.+|++.|.+++++++||+|+++ +++|+||.+||+++..... .+...
T Consensus 5 ~v~d----im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~-~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~ 79 (180)
T 3sl7_A 5 TVGD----FMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNW-TLVGVVSDYDLLALDSISGRSQNDTNLFPDVD 79 (180)
T ss_dssp BHHH----HSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHTCC------------------
T ss_pred eHHH----hcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCC-eEEEEEEHHHHHhhhhhccccCCccccccccc
Confidence 4556 77761 489999999999999999999999999999888 9999999999986432110 00000
Q ss_pred -ccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 327 -RSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 327 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
.......+...... ....++.++|.+++.++++++++.+|+++|.+++++++||+|++|+++|+||.+||++++...
T Consensus 80 ~~~~~~~~~~~~~~~--~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~ 157 (180)
T 3sl7_A 80 STWKTFNELQKLISK--TYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQI 157 (180)
T ss_dssp -CCCSHHHHHHHHHT--TTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHhc--cccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence 00000011110010 011244556666899999999999999999999999999999999999999999999999753
No 61
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.67 E-value=3.2e-16 Score=129.95 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=104.0
Q ss_pred cccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcccc
Q 014353 177 KNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKK 256 (426)
Q Consensus 177 ~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~ 256 (426)
...+++++|.+. .++.++.+++++.+++..|.+++++++||+|.+.++++|++|..|+++++... ..+
T Consensus 3 ~~~~v~diM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~----------~~~ 70 (129)
T 3jtf_A 3 AERTVADIMVPR--SRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEP----------ALD 70 (129)
T ss_dssp -CCBHHHHCEEG--GGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCT----------TSC
T ss_pred CCCCHHHhCccH--HHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccC----------CcC
Confidence 356799999831 16789999999999999999999999999994238999999999998776421 346
Q ss_pred ccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353 257 LSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT 318 (426)
Q Consensus 257 v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~ 318 (426)
+.+ +|++ ++++.+++++.++++.|.+++++.+||+|++| +++|+||.+|+++.+.
T Consensus 71 v~~----~m~~--~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g-~~~Giit~~Dil~~l~ 125 (129)
T 3jtf_A 71 IRS----LVRP--AVFIPEVKRLNVLLREFRASRNHLAIVIDEHG-GISGLVTMEDVLEQIV 125 (129)
T ss_dssp GGG----GCBC--CCEEETTCBHHHHHHHHHTSSCCEEEEECC-C-CEEEEEEHHHHHHHHH
T ss_pred HHH----HhCC--CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEEHHHHHHHHh
Confidence 777 6753 88999999999999999999999999999988 9999999999998864
No 62
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.67 E-value=3.9e-16 Score=130.65 Aligned_cols=127 Identities=24% Similarity=0.398 Sum_probs=109.1
Q ss_pred hhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHH-HHHHHhhcCCCC
Q 014353 50 CFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGI-AVWILHQSEPPS 128 (426)
Q Consensus 50 ~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di-~~~l~~~~~~~~ 128 (426)
.+..++++++ |.++++++++++++.+|+++|.++++..+||+|++ ++++|+|+..|+ ..++...
T Consensus 4 ~l~~~~v~~i--m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--------~~~~Givt~~dl~~~~~~~~----- 68 (138)
T 2p9m_A 4 TLKNIKVKDV--MTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDE--------NKVIGIVTTTDIGYNLIRDK----- 68 (138)
T ss_dssp -CTTCBGGGT--SBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTT--------CBEEEEEEHHHHHHHHTTTC-----
T ss_pred ccccCCHHHh--hcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCC--------CeEEEEEEHHHHHHHHHhhc-----
Confidence 4567888888 88899999999999999999999999999999987 899999999999 7653211
Q ss_pred CCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHH
Q 014353 129 PRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLL 208 (426)
Q Consensus 129 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~ 208 (426)
.....++.++|.. ++.++.+++++.+++..
T Consensus 69 ----------------------------------------------~~~~~~v~~~m~~----~~~~v~~~~~l~~~~~~ 98 (138)
T 2p9m_A 69 ----------------------------------------------YTLETTIGDVMTK----DVITIHEDASILEAIKK 98 (138)
T ss_dssp ----------------------------------------------CCSSCBHHHHSCS----SCCCEETTSBHHHHHHH
T ss_pred ----------------------------------------------ccCCcCHHHHhCC----CcEEECCCCCHHHHHHH
Confidence 1124578889986 78899999999999999
Q ss_pred HhhcC-----CcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353 209 LSKYK-----MKSIPVVDLGEGTIDNIITQSSVIHMLAE 242 (426)
Q Consensus 209 l~~~~-----~~~ipVvd~~~~~l~Giis~~Dl~~~l~~ 242 (426)
|.+++ ++++||+| ++|+++|++|..|+++++.+
T Consensus 99 ~~~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 99 MDISGKKEEIINQLPVVD-KNNKLVGIISDGDIIRTISK 136 (138)
T ss_dssp HTCC-----CCCEEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred HHhcCCccccccEEEEEC-CCCeEEEEEEHHHHHHHHHh
Confidence 99999 99999999 47999999999999998753
No 63
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.67 E-value=2.7e-16 Score=142.21 Aligned_cols=163 Identities=16% Similarity=0.210 Sum_probs=105.2
Q ss_pred ccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccc
Q 014353 178 NTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKL 257 (426)
Q Consensus 178 ~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v 257 (426)
..+++++|.. +++++.+++++.+++..|.+++++++||+| ++++++|++|..|+...+. ..++
T Consensus 12 ~~~~~~~~~~----~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd-~~~~l~Givt~~dl~~~~~------------~~~v 74 (213)
T 1vr9_A 12 HMKVKKWVTQ----DFPMVEESATVRECLHRMRQYQTNECIVKD-REGHFRGVVNKEDLLDLDL------------DSSV 74 (213)
T ss_dssp -CBGGGGCBS----CSCEEETTCBHHHHHHHHHHTTSSEEEEEC-TTSBEEEEEEGGGGTTSCT------------TSBS
T ss_pred ccCHHHhhcC----CCeEECCCCcHHHHHHHHHHCCCCEEEEEc-CCCEEEEEEEHHHHHhhcC------------CCcH
Confidence 4567888887 889999999999999999999999999999 4799999999999865432 2467
Q ss_pred cccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHH
Q 014353 258 SEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTA 337 (426)
Q Consensus 258 ~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 337 (426)
.+ +|.++ ++++.+++++.++++.|.+++++++||+|++| +++|+||.+|+++.+..... ..+....
T Consensus 75 ~~----im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~lvGiit~~Dil~~~~~~~~--------~~~~~~~ 140 (213)
T 1vr9_A 75 FN----KVSLP-DFFVHEEDNITHALLLFLEHQEPYLPVVDEEM-RLKGAVSLHDFLEALIEALA--------MDVPGIR 140 (213)
T ss_dssp GG----GCBCT-TCCEETTSBHHHHHHHHHHCCCSEEEEECTTC-BEEEEEEHHHHHHHHHHSCC---------------
T ss_pred HH----HccCC-CEEECCCCcHHHHHHHHHHhCCCEEEEEcCCC-EEEEEEEHHHHHHHHHHHhc--------CCCCcEE
Confidence 77 78874 89999999999999999999999999999887 99999999999988643210 0011110
Q ss_pred HHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCC
Q 014353 338 VRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNG 387 (426)
Q Consensus 338 v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~ 387 (426)
+ .+.+.....++.++.+.|.+++++.++|++.+|
T Consensus 141 l----------------~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~ 174 (213)
T 1vr9_A 141 F----------------SVLLEDKPGELRKVVDALALSNINILSVITTRS 174 (213)
T ss_dssp --------------------------------------------------
T ss_pred E----------------EEEeCCCCccHHHHHHHHHHCCCcEEEEEEEec
Confidence 0 111223334599999999999999999987544
No 64
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.66 E-value=5.1e-16 Score=133.74 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=110.3
Q ss_pred cCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCC
Q 014353 53 SIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSS 132 (426)
Q Consensus 53 ~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~ 132 (426)
.++++++ |.++++++++++|+.+|+++|.++++..+||+|++ |+++|+||..||+.++........
T Consensus 4 ~~~v~di--m~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~--------~~lvGivt~~dl~~~~~~~~~~~~---- 69 (160)
T 2o16_A 4 MIKVEDM--MTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN--------KKLLGIVSQRDLLAAQESSLQRSA---- 69 (160)
T ss_dssp CCBGGGT--SEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT--------CBEEEEEEHHHHHHHHHHHCC-------
T ss_pred cCcHHHH--hcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CcEEEEEeHHHHHHHHHHhhcccc----
Confidence 4677777 88899999999999999999999999999999987 899999999999988765321100
Q ss_pred CCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhc
Q 014353 133 SPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKY 212 (426)
Q Consensus 133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~ 212 (426)
.........++.++|.. ++.++.+++++.+++..|.++
T Consensus 70 --------------------------------------~~~~~~~~~~v~~im~~----~~~~v~~~~~l~~a~~~m~~~ 107 (160)
T 2o16_A 70 --------------------------------------QGDSLAFETPLFEVMHT----DVTSVAPQAGLKESAIYMQKH 107 (160)
T ss_dssp --------------------------------------------CCCBHHHHSCS----CEEEBCTTSBHHHHHHHHHHT
T ss_pred --------------------------------------cccchhcccCHHHHhcC----CCeEECCCCCHHHHHHHHHHh
Confidence 00112235679999987 889999999999999999999
Q ss_pred CCcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353 213 KMKSIPVVDLGEGTIDNIITQSSVIHMLAE 242 (426)
Q Consensus 213 ~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~ 242 (426)
+++++||+| + |+++|+||..|+++++..
T Consensus 108 ~~~~lpVvd-~-g~lvGiit~~dil~~~~~ 135 (160)
T 2o16_A 108 KIGCLPVVA-K-DVLVGIITDSDFVTIAIN 135 (160)
T ss_dssp TCSCEEEEE-T-TEEEEEECHHHHHHHHHH
T ss_pred CCCEEEEEE-C-CEEEEEEEHHHHHHHHHH
Confidence 999999999 4 999999999999998754
No 65
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.66 E-value=4.3e-16 Score=128.87 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=106.7
Q ss_pred ccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccc
Q 014353 178 NTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKL 257 (426)
Q Consensus 178 ~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v 257 (426)
..+++++|.+ ++.++.+++++.+++..|.+++++++||+| + ++++|++|..|+++.+..... ...++
T Consensus 4 s~~v~~~m~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~-------~~~~v 70 (128)
T 3gby_A 4 SVTFSYLAET----DYPVFTLGGSTADAARRLAASGCACAPVLD-G-ERYLGMVHLSRLLEGRKGWPT-------VKEKL 70 (128)
T ss_dssp TCBGGGGCBC----CSCCEETTSBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHTTCSSSCC-------TTCBC
T ss_pred ceEHHHhhcC----CcceECCCCCHHHHHHHHHHCCCcEEEEEE-C-CEEEEEEEHHHHHHHHhhCCc-------ccCcH
Confidence 4578999997 888999999999999999999999999999 4 999999999999887643321 02456
Q ss_pred cccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353 258 SEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT 318 (426)
Q Consensus 258 ~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~ 318 (426)
.+ +|.++ +.++.+++++.++++.|.+++++.+||+|++| +++|+||.+|+++++.
T Consensus 71 ~~----~m~~~-~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g-~~~Giit~~dll~~l~ 125 (128)
T 3gby_A 71 GE----ELLET-VRSYRPGEQLFDNLISVAAAKCSVVPLADEDG-RYEGVVSRKRILGFLA 125 (128)
T ss_dssp CG----GGCBC-CCCBCTTSBGGGSHHHHHHCSSSEEEEECTTC-BEEEEEEHHHHHHHHH
T ss_pred HH----HccCC-CcEECCCCCHHHHHHHHHhCCCcEEEEECCCC-CEEEEEEHHHHHHHHH
Confidence 66 78764 89999999999999999999999999999888 9999999999999864
No 66
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.66 E-value=6.7e-16 Score=136.21 Aligned_cols=125 Identities=22% Similarity=0.319 Sum_probs=106.2
Q ss_pred ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHH
Q 014353 255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNF 334 (426)
Q Consensus 255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~ 334 (426)
.++++ +|.++ ++++.+++++.+|++.|.+++++++||+|++| +++|+|+.+||+..+..... .
T Consensus 9 ~~v~~----im~~~-~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g-~~vGivt~~dl~~~~~~~~~--~--------- 71 (184)
T 1pvm_A 9 MRVEK----IMNSN-FKTVNWNTTVFDAVKIMNENHLYGLVVKDDNG-NDVGLLSERSIIKRFIPRNK--K--------- 71 (184)
T ss_dssp CBGGG----TSBTT-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTS-CEEEEEEHHHHHHHTGGGCC--C---------
T ss_pred cCHHH----hcCCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEeHHHHHHHHhhccc--C---------
Confidence 46666 78764 99999999999999999999999999999877 99999999999987642110 0
Q ss_pred HHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353 335 LTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH 404 (426)
Q Consensus 335 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~ 404 (426)
....++.++|.+++.++.+++++.+|+++|.+++++++||+|++|+++|+||..||++++.+
T Consensus 72 --------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 72 --------PDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR 133 (184)
T ss_dssp --------GGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred --------cccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence 00114556677789999999999999999999999999999988999999999999988766
No 67
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.66 E-value=1.8e-15 Score=124.27 Aligned_cols=121 Identities=23% Similarity=0.235 Sum_probs=105.6
Q ss_pred chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccc
Q 014353 180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSE 259 (426)
Q Consensus 180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~ 259 (426)
+++++|.+ ++.++.+++++.+++..|.+++.+++||+| +++++|+++..|+++.+..... ....++.+
T Consensus 2 ~v~~~m~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~G~it~~dl~~~~~~~~~------~~~~~v~~ 69 (125)
T 1pbj_A 2 RVEDVMVT----DVDTIDITASLEDVLRNYVENAKGSSVVVK--EGVRVGIVTTWDVLEAIAEGDD------LAEVKVWE 69 (125)
T ss_dssp CHHHHCBC----SCCEEETTCBHHHHHHHHHHHCCCEEEEEE--TTEEEEEEEHHHHHHHHHHTCC------TTTSBHHH
T ss_pred CHHHhcCC----CceEECCCCcHHHHHHHHHHcCCCEEEEEe--CCeeEEEEeHHHHHHHHhcCCc------ccccCHHH
Confidence 57788886 888999999999999999999999999999 6999999999999988765422 12456777
Q ss_pred cccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353 260 IGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA 319 (426)
Q Consensus 260 ~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~ 319 (426)
+|.+. +.++.+++++.++++.|.+++++++||+|+ | +++|+||.+|+++++..
T Consensus 70 ----~m~~~-~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~-~~~Gvit~~dl~~~l~~ 122 (125)
T 1pbj_A 70 ----VMERD-LVTISPRATIKEAAEKMVKNVVWRLLVEED-D-EIIGVISATDILRAKMA 122 (125)
T ss_dssp ----HCBCG-GGEECTTSCHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHHHC-
T ss_pred ----HcCCC-CeEECCCCCHHHHHHHHHhcCCcEEEEEEC-C-EEEEEEEHHHHHHHHHh
Confidence 77764 899999999999999999999999999998 7 99999999999998653
No 68
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.66 E-value=2.1e-16 Score=135.10 Aligned_cols=124 Identities=18% Similarity=0.202 Sum_probs=108.5
Q ss_pred hccCCccCCCCCCC--ceEEEeCCCCHHHHHHHHHHCCcccceee-ecCCCCCcccccceEEEeehHHHHHHHHhhcCCC
Q 014353 51 FESIPVEAFPPPPS--QVIEIKSDTSLAEAVEILAQHRILSAPVV-DVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPP 127 (426)
Q Consensus 51 ~~~~~~~~~~~~~~--~vi~v~~~~sl~~A~~~l~~~~i~slPVv-d~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~ 127 (426)
+..++++++ |++ +++++++++++.+|+++|.++++.++||+ |++. ++++|+||..||+.++....
T Consensus 17 l~~~~v~~i--M~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~-------~~lvGivt~~dl~~~~~~~~--- 84 (153)
T 3oco_A 17 MNDKVASDV--MVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDK-------DKIIGYAYNYDIVRQARIDD--- 84 (153)
T ss_dssp HHHCBHHHH--SEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEE-------EEEEEEEEHHHHHHHHHHHT---
T ss_pred cCCCEeeeE--ecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCC-------CcEEEEEEHHHHHhHHhcCC---
Confidence 456888888 765 89999999999999999999999999999 6432 89999999999997755321
Q ss_pred CCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHH
Q 014353 128 SPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLL 207 (426)
Q Consensus 128 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~ 207 (426)
..++.++| . ++.++.+++++.+++.
T Consensus 85 --------------------------------------------------~~~v~~~m-~----~~~~v~~~~~l~~~~~ 109 (153)
T 3oco_A 85 --------------------------------------------------KAKISTIM-R----DIVSVPENMKVPDVME 109 (153)
T ss_dssp --------------------------------------------------TSBGGGTC-B----CCEEEETTSBHHHHHH
T ss_pred --------------------------------------------------CCcHHHHh-C----CCeEECCCCCHHHHHH
Confidence 34688888 5 8899999999999999
Q ss_pred HHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353 208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAE 242 (426)
Q Consensus 208 ~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~ 242 (426)
.|.+++++++||+| ++|+++|+||..|+++.+..
T Consensus 110 ~m~~~~~~~lpVvd-~~g~~vGivt~~dil~~l~~ 143 (153)
T 3oco_A 110 EMSAHRVPMAIVID-EYGGTSGIITDKDVYEELFG 143 (153)
T ss_dssp HHHHTTCSCEEEEC-TTSCEEEEECHHHHHHHHHC
T ss_pred HHHHcCCcEEEEEe-CCCCEEEEeeHHHHHHHHhc
Confidence 99999999999999 47999999999999999864
No 69
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.66 E-value=1.9e-15 Score=127.17 Aligned_cols=120 Identities=21% Similarity=0.299 Sum_probs=105.4
Q ss_pred cchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCC--eEEEEEeHHHHHHHHHhccCcchhhhhcccc
Q 014353 179 TKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEG--TIDNIITQSSVIHMLAECAGLEWFESWGKKK 256 (426)
Q Consensus 179 ~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~--~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~ 256 (426)
.+++++|.+ ++.++.+++++.+++..|.+++++++||+| +++ +++|++|..|+++++..... ...+
T Consensus 5 ~~v~~im~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~~~~Givt~~dl~~~~~~~~~-------~~~~ 72 (141)
T 2rih_A 5 IRTSELLKR----PPVSLPETATIREVATELAKNRVGLAVLTA-RDNPKRPVAVVSERDILRAVAQRLD-------LDGP 72 (141)
T ss_dssp CBGGGGCCS----CCEEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEEEEHHHHHHHHHTTCC-------TTSB
T ss_pred eEHHHHhcC----CCeEeCCCCcHHHHHHHHHHcCCCEEEEEc-CCCcceeEEEEEHHHHHHHHhcCCC-------CCCC
Confidence 478899987 889999999999999999999999999999 467 99999999999998764321 1356
Q ss_pred ccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 014353 257 LSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLL 317 (426)
Q Consensus 257 v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~ 317 (426)
+.+ +|.++ ++++.++ ++.++++.|.+++++.+||+|++| +++|+||.+||++..
T Consensus 73 v~~----~m~~~-~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g-~~~Giit~~dll~~~ 126 (141)
T 2rih_A 73 AMP----IANSP-ITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNG-ELVGVLSIRDLCFER 126 (141)
T ss_dssp SGG----GCBCC-CEEETTS-BHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHSCH
T ss_pred HHH----HcCCC-CeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCC-cEEEEEEHHHHHHHH
Confidence 777 78764 9999999 999999999999999999999887 999999999998774
No 70
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.66 E-value=3.3e-16 Score=129.42 Aligned_cols=122 Identities=19% Similarity=0.299 Sum_probs=104.2
Q ss_pred cchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC-CeEEEEEeHHHHHHHHHhccCcchhhhhccccc
Q 014353 179 TKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE-GTIDNIITQSSVIHMLAECAGLEWFESWGKKKL 257 (426)
Q Consensus 179 ~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~-~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v 257 (426)
.+++++|.+. .++.++.+++++.+++..|.+++++++||+|. + ++++|++|..|+++.+.... ...++
T Consensus 3 ~~v~diM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~~vGivt~~dl~~~~~~~~--------~~~~v 71 (127)
T 3nqr_A 3 QRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISE-DKDHIEGILMAKDLLPFMRSDA--------EAFSM 71 (127)
T ss_dssp CBHHHHSEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESS-STTCEEEEEEGGGGGGGGSTTC--------CCCCH
T ss_pred cCHHHhcccH--HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcC-CCCcEEEEEEHHHHHHHHhccC--------CCCCH
Confidence 4788999851 13889999999999999999999999999994 5 89999999999988764321 13567
Q ss_pred cccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353 258 SEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT 318 (426)
Q Consensus 258 ~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~ 318 (426)
.+ +|++ ++++.+++++.++++.|.+++++.+||+|++| +++|+||.+|+++.+.
T Consensus 72 ~~----~m~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~~~Giit~~dll~~l~ 125 (127)
T 3nqr_A 72 DK----VLRT--AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFG-GVSGLVTIEDILELIV 125 (127)
T ss_dssp HH----HCBC--CCEEETTCBHHHHHHHHHHTTCCEEEEECTTS-CEEEEEEHHHHHHHC-
T ss_pred HH----HcCC--CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEEHHHHHHHHh
Confidence 77 7754 78999999999999999999999999999888 9999999999998853
No 71
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.65 E-value=1.8e-15 Score=139.62 Aligned_cols=145 Identities=16% Similarity=0.240 Sum_probs=106.7
Q ss_pred cccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCC-CeEEEEEeHHHHHHHhhCCc----cc-cc--
Q 014353 254 KKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGG-NKAVGNISLRDIQFLLTAPE----IY-HD-- 325 (426)
Q Consensus 254 ~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~~~~~~~----~~-~~-- 325 (426)
...+++ +|+++ ++++.+++++.++.++|.+++++++||||+++ ++++|+||++||++++.... .. ..
T Consensus 12 ~~~v~d----iMt~~-vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~ 86 (250)
T 2d4z_A 12 NIQVGD----IMVRD-VTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAA 86 (250)
T ss_dssp SCBTTS----SSBSS-CCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCC
T ss_pred CCChHH----hcCCC-CeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhh
Confidence 345666 89875 99999999999999999999999999999742 38999999999998764220 00 00
Q ss_pred ------------------------ccc-----------------------------------------------------
Q 014353 326 ------------------------YRS----------------------------------------------------- 328 (426)
Q Consensus 326 ------------------------~~~----------------------------------------------------- 328 (426)
+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (250)
T 2d4z_A 87 EADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASR 166 (250)
T ss_dssp CBCCC---------------------------------------------------------------------------
T ss_pred cccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcc
Confidence 000
Q ss_pred ----ccHHHHHHHHHHHhhhcCCCC-CCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353 329 ----ITAKNFLTAVRKYMEEHHHED-SPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV 403 (426)
Q Consensus 329 ----~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~ 403 (426)
++..+...-..+.+...-... .+|.+.|+++.++++|.+|..+|...+++++||++ .|+++||||+.||++++.
T Consensus 167 ~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~ 245 (250)
T 2d4z_A 167 FEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE 245 (250)
T ss_dssp CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred cccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence 000000000011122211113 36889999999999999999999999999999998 699999999999999987
Q ss_pred h
Q 014353 404 H 404 (426)
Q Consensus 404 ~ 404 (426)
+
T Consensus 246 ~ 246 (250)
T 2d4z_A 246 G 246 (250)
T ss_dssp C
T ss_pred H
Confidence 4
No 72
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.65 E-value=1.4e-15 Score=129.82 Aligned_cols=131 Identities=18% Similarity=0.291 Sum_probs=110.5
Q ss_pred HHHhhhhccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhc
Q 014353 45 EKLNACFESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQS 124 (426)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~ 124 (426)
....+.++.+++.++ ++++++++++++.+|+++|.++++..+||+|++ |+++|+||..||+..+....
T Consensus 14 ~~~~~~l~~~~v~~~----~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~--------~~~vGivt~~dl~~~~~~~~ 81 (152)
T 2uv4_A 14 EFMSKSLEELQIGTY----ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK--------GRVVDIYSKFDVINLAAEKT 81 (152)
T ss_dssp HHHTSBHHHHTCSBC----SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT--------SBEEEEEEHHHHHHHHHCSS
T ss_pred HHHHhhHHHccCCcc----CCceEeCCCCcHHHHHHHHHHcCCceEeEECCC--------CcEEEEEeHHHHHHHhcchh
Confidence 456777888888886 688999999999999999999999999999987 89999999999987654321
Q ss_pred CCCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhcc------ccccCCcEEecC
Q 014353 125 EPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAG------SFRWAPFLALQK 198 (426)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~------~~~~~~~~~v~~ 198 (426)
. .....++.++|. . ++.++.+
T Consensus 82 ~-------------------------------------------------~~~~~~v~~~m~~~~~~~~----~~~~v~~ 108 (152)
T 2uv4_A 82 Y-------------------------------------------------NNLDVSVTKALQHRSHYFE----GVLKCYL 108 (152)
T ss_dssp C-------------------------------------------------CCTTSBGGGGGGTCCHHHH----TCSEECT
T ss_pred h-------------------------------------------------hhhcchHHHHHhhhhcccC----CCeEECC
Confidence 0 001235666764 4 7889999
Q ss_pred CCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHH
Q 014353 199 SNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLA 241 (426)
Q Consensus 199 ~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~ 241 (426)
++++.+++..|.+++++++||+| ++|+++|+||..|+++++.
T Consensus 109 ~~~l~~a~~~m~~~~~~~lpVvd-~~g~~vGiit~~dil~~l~ 150 (152)
T 2uv4_A 109 HETLETIINRLVEAEVHRLVVVD-ENDVVKGIVSLSDILQALV 150 (152)
T ss_dssp TSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHC
T ss_pred CCcHHHHHHHHHHcCCeEEEEEC-CCCeEEEEEEHHHHHHHHH
Confidence 99999999999999999999999 4799999999999998874
No 73
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.65 E-value=4.3e-16 Score=133.92 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=105.8
Q ss_pred cccccccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHH
Q 014353 254 KKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAK 332 (426)
Q Consensus 254 ~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~ 332 (426)
..++++ +|.+ ++++++.+++++.++++.|.+++++++||+|++| +++|+||.+||+..+.....+... .
T Consensus 13 ~~~v~~----im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~-~lvGivt~~dl~~~~~~~~~~~~~-----~ 82 (159)
T 1yav_A 13 EATVGQ----FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSY-RLHGLIGTNMIMNSIFGLERIEFE-----K 82 (159)
T ss_dssp TCBHHH----HSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTC-BEEEEEEHHHHHHHHBCSSSBCGG-----G
T ss_pred HhhHHH----HhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCC-CEEEEeEHHHHHHHhhhhcccchh-----h
Confidence 456777 7775 1389999999999999999999999999999888 999999999999987553211000 0
Q ss_pred HHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q 014353 333 NFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG 408 (426)
Q Consensus 333 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~ 408 (426)
....++.++| .+++.++.+++++.++++.|.++++ +||+|++|+++|+||.+||++.+.++...
T Consensus 83 ~~~~~v~~~m----------~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~~~ 146 (159)
T 1yav_A 83 LDQITVEEVM----------LTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHIRS 146 (159)
T ss_dssp TTTSBHHHHS----------BCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC--
T ss_pred hccCCHHHhc----------CCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHHHh
Confidence 0112344444 4488999999999999999999987 99999889999999999999999866543
No 74
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.65 E-value=4.8e-16 Score=130.16 Aligned_cols=125 Identities=11% Similarity=0.194 Sum_probs=104.9
Q ss_pred ccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccc
Q 014353 178 NTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKL 257 (426)
Q Consensus 178 ~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v 257 (426)
..+++++|.+. .++.++.+++++.+++..|.+++++++||+|.+.++++|++|..|+++++.... ....++
T Consensus 2 ~~~v~~iM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~-------~~~~~v 72 (136)
T 3lfr_A 2 DLQVRDIMVPR--SQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKAD-------GDSDDV 72 (136)
T ss_dssp -CBHHHHSEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSS-------GGGCCG
T ss_pred CCChHhccccH--HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhcc-------CCCcCH
Confidence 34788999831 167899999999999999999999999999942279999999999988765221 124567
Q ss_pred cccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353 258 SEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT 318 (426)
Q Consensus 258 ~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~ 318 (426)
.+ +|++ ++++.+++++.++++.|.+++++.+||+|++| +++|+||.+|+++.+.
T Consensus 73 ~~----~m~~--~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g-~lvGiit~~Dil~~l~ 126 (136)
T 3lfr_A 73 KK----LLRP--ATFVPESKRLNVLLREFRANHNHMAIVIDEYG-GVAGLVTIEDVLEQIV 126 (136)
T ss_dssp GG----TCBC--CCEEETTCBHHHHHHHHHHHTCCEEEEECTTS-CEEEEEEHHHHHTTC-
T ss_pred HH----HcCC--CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEEHHHHHHHHh
Confidence 77 7864 89999999999999999999999999999988 9999999999998864
No 75
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.64 E-value=2.5e-16 Score=133.92 Aligned_cols=140 Identities=23% Similarity=0.303 Sum_probs=108.2
Q ss_pred ccCCccCCCCCCC--ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCC
Q 014353 52 ESIPVEAFPPPPS--QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSP 129 (426)
Q Consensus 52 ~~~~~~~~~~~~~--~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~ 129 (426)
+.++++++ |.+ +++++++++++.+|+++|.++++..+||+|++ ++++|+||..||+.++......
T Consensus 3 ~~~~v~~i--m~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--------~~~~G~vt~~dl~~~~~~~~~~--- 69 (152)
T 4gqw_A 3 GVYTVGEF--MTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDED--------WKLVGLVSDYDLLALDSGDSTW--- 69 (152)
T ss_dssp CCSBGGGT--SEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTT--------CBEEEEEEHHHHTTCC----CC---
T ss_pred ceEEhhhc--cCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCC--------CeEEEEEEHHHHHHhhcccCcc---
Confidence 45778887 765 89999999999999999999999999999988 8999999999997532211000
Q ss_pred CCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHH
Q 014353 130 RSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLL 209 (426)
Q Consensus 130 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l 209 (426)
. .+...-.........++.++|.. ++.++.+++++.+++..|
T Consensus 70 ----------------~------------------~~~~~~~~~~~~~~~~v~~~m~~----~~~~v~~~~~l~~a~~~~ 111 (152)
T 4gqw_A 70 ----------------K------------------TFNAVQKLLSKTNGKLVGDLMTP----APLVVEEKTNLEDAAKIL 111 (152)
T ss_dssp ----------------H------------------HHHHHHTC-----CCBHHHHSEE----SCCCEESSSBHHHHHHHH
T ss_pred ----------------c------------------chHHHHHHHHHhccccHHHhcCC----CceEECCCCcHHHHHHHH
Confidence 0 00000000012235679999987 788999999999999999
Q ss_pred hhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhc
Q 014353 210 SKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAEC 243 (426)
Q Consensus 210 ~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~ 243 (426)
.+++++++||+| ++|+++|+||..|+++++.+.
T Consensus 112 ~~~~~~~l~Vvd-~~g~~~Giit~~dil~~~~~~ 144 (152)
T 4gqw_A 112 LETKYRRLPVVD-SDGKLVGIITRGNVVRAALQI 144 (152)
T ss_dssp HHSSCCEEEEEC-TTSBEEEEEEHHHHHHHHHC-
T ss_pred HHCCCCEEEEEC-CCCcEEEEEEHHHHHHHHHhc
Confidence 999999999999 489999999999999998643
No 76
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.64 E-value=1.5e-15 Score=129.04 Aligned_cols=132 Identities=22% Similarity=0.296 Sum_probs=109.9
Q ss_pred cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcc
Q 014353 175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK 254 (426)
Q Consensus 175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~ 254 (426)
.+...+++++|.+. .++.++.+++++.+++..|.+++++++||+| ++++++|++|..|+++.+....... ......
T Consensus 11 ~l~~~~v~~im~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd-~~~~~~Givt~~dl~~~~~~~~~~~-~~~~~~ 86 (150)
T 3lqn_A 11 EFQQIFVKDLMISS--EKVAHVQIGNGLEHALLVLVKSGYSAIPVLD-PMYKLHGLISTAMILDGILGLERIE-FERLEE 86 (150)
T ss_dssp HHHHCBHHHHSEEG--GGSCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHTBCSSSBC-GGGGGG
T ss_pred hhhcCChhhcccCC--CceEEECCCCcHHHHHHHHHHcCCcEEEEEC-CCCCEEEEEEHHHHHHHHHhhcccc-hhHHhc
Confidence 35567899999841 1588999999999999999999999999999 4899999999999999885332211 122335
Q ss_pred ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353 255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT 318 (426)
Q Consensus 255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~ 318 (426)
.++.+ +|.++ ++++.+++++.++++.|.++++ +||+|++| +++|+||.+||++++.
T Consensus 87 ~~v~~----~m~~~-~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g-~~~Giit~~dil~~l~ 142 (150)
T 3lqn_A 87 MKVEQ----VMKQD-IPVLKLEDSFAKALEMTIDHPF--ICAVNEDG-YFEGILTRRAILKLLN 142 (150)
T ss_dssp CBGGG----TCBSS-CCEEETTCBHHHHHHHHHHCSE--EEEECTTC-BEEEEEEHHHHHHHHH
T ss_pred CCHHH----HhcCC-CceeCCCCCHHHHHHHHHhCCE--EEEECCCC-cEEEEEEHHHHHHHHH
Confidence 67777 78864 8999999999999999999987 99999888 9999999999999864
No 77
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.64 E-value=4.6e-15 Score=124.12 Aligned_cols=125 Identities=19% Similarity=0.305 Sum_probs=107.3
Q ss_pred ccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHH-HHhccCcchhhhhcc
Q 014353 176 YKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHM-LAECAGLEWFESWGK 254 (426)
Q Consensus 176 ~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~-l~~~~~~~~~~~~~~ 254 (426)
+...+++++|.. ++.++.+++++.+++..|.+++++++||+| ++++++|+++..|+++. +.... ...
T Consensus 4 l~~~~v~~im~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~~Givt~~dl~~~~~~~~~-------~~~ 71 (138)
T 2yzi_A 4 DMKAPIKVYMTK----KLLGVKPSTSVQEASRLMMEFDVGSLVVIN-DDGNVVGFFTKSDIIRRVIVPGL-------PYD 71 (138)
T ss_dssp CTTSBGGGTCBC----CCCEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHTTTTCC-------CTT
T ss_pred hhhhhHHHHhcC----CCeEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEeHHHHHHHHHhcCC-------ccc
Confidence 345689999986 888999999999999999999999999999 47999999999999854 33221 123
Q ss_pred ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353 255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA 319 (426)
Q Consensus 255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~ 319 (426)
.++.+ +|.++ ++++.+++++.++++.|.+++++++ |+|++| +++|+||.+||++.+..
T Consensus 72 ~~v~~----~m~~~-~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g-~~~Giit~~dil~~~~~ 129 (138)
T 2yzi_A 72 IPVER----IMTRN-LITANVNTPLGEVLRKMAEHRIKHI-LIEEEG-KIVGIFTLSDLLEASRR 129 (138)
T ss_dssp SBGGG----TCBCS-CCEEETTSBHHHHHHHHHHHTCSEE-EEEETT-EEEEEEEHHHHHHHHHC
T ss_pred CCHHH----HhhCC-CeEECCCCcHHHHHHHHHhcCCCEE-EECCCC-CEEEEEEHHHHHHHHHH
Confidence 56777 78764 8999999999999999999999999 999888 99999999999998754
No 78
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.64 E-value=2e-16 Score=135.71 Aligned_cols=143 Identities=16% Similarity=0.289 Sum_probs=116.4
Q ss_pred cccccchhhhcCC-----CCChhHH--Hhhh--hccCCccCCCCCCC--ceEEEeCCCCHHHHHHHHHHCCcccceeeec
Q 014353 27 GMKVEDLWDVLEP-----QLSPTEK--LNAC--FESIPVEAFPPPPS--QVIEIKSDTSLAEAVEILAQHRILSAPVVDV 95 (426)
Q Consensus 27 ~~~~~~~~~~l~~-----~~~~~~~--~~~~--~~~~~~~~~~~~~~--~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~ 95 (426)
++|+++|...++. .++.++. +++. |..++++++ |++ +++++++++++.+|+++|.++++..+||+|+
T Consensus 2 ~~t~~el~~li~~~~~~g~l~~~e~~~i~~~~~l~~~~v~di--M~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~ 79 (156)
T 3oi8_A 2 NASAEDVLNLLRQAHEQEVFDADTLLRLEKVLDFSDLEVRDA--MITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE 79 (156)
T ss_dssp CCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCBGGGT--CEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS
T ss_pred CCCHHHHHHHHHhHHhcCCcCHHHHHHHHHHhccCCCCHhhe--eeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC
Confidence 4677777777632 3776542 4433 557899998 865 8999999999999999999999999999998
Q ss_pred CCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhccccccc
Q 014353 96 DAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEF 175 (426)
Q Consensus 96 ~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 175 (426)
+. ++++|+||..|++.++.. .
T Consensus 80 ~~-------~~lvGivt~~dl~~~~~~--------------------------------------------------~-- 100 (156)
T 3oi8_A 80 DK-------DEVLGILHAKDLLKYMFN--------------------------------------------------P-- 100 (156)
T ss_dssp ST-------TCEEEEEEGGGGGGGSSC--------------------------------------------------G--
T ss_pred CC-------CcEEEEEEHHHHHHHHHc--------------------------------------------------C--
Confidence 72 499999999999643110 0
Q ss_pred ccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHH
Q 014353 176 YKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVI 237 (426)
Q Consensus 176 ~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~ 237 (426)
...++.++|. ++.++.+++++.+++..|.+++++++||+| ++|+++|+||..|++
T Consensus 101 -~~~~v~~im~-----~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd-~~g~~~Givt~~Dil 155 (156)
T 3oi8_A 101 -EQFHLKSILR-----PAVFVPEGKSLTALLKEFREQRNHMAIVID-EYGGTSGLVTFEDII 155 (156)
T ss_dssp -GGCCHHHHCB-----CCCEEETTSBHHHHHHHHHHTTCCEEEEEC-TTSSEEEEEEHHHHC
T ss_pred -CcccHHHHcC-----CCEEECCCCCHHHHHHHHHhcCCeEEEEEC-CCCCEEEEEEHHHhc
Confidence 2456888996 677999999999999999999999999999 479999999999975
No 79
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.64 E-value=4.7e-15 Score=128.32 Aligned_cols=132 Identities=20% Similarity=0.224 Sum_probs=111.8
Q ss_pred cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcc
Q 014353 175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK 254 (426)
Q Consensus 175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~ 254 (426)
.....+++++|.+. ..++.++.+++++.+++..|.+++++++||+| ++++++|+||..|+++.+..... ....
T Consensus 20 ~l~~~~v~dim~~~-~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd-~~~~~~Givt~~dl~~~~~~~~~-----~~~~ 92 (165)
T 3fhm_A 20 QGMATFVKDLLDRK-GRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTD-ADGVVLGIFTERDLVKAVAGQGA-----ASLQ 92 (165)
T ss_dssp SSSSCBHHHHHHHH-CSCCCEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHHHGG-----GGGT
T ss_pred hhhhcCHHHHhccC-CCCCeEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHHHhcCC-----cccc
Confidence 45567899999841 01588999999999999999999999999999 47999999999999998864321 1224
Q ss_pred ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCC
Q 014353 255 KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAP 320 (426)
Q Consensus 255 ~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~ 320 (426)
.++.+ +|.++ ++++.+++++.++++.|.+++++++||+|+ | +++|+||..||++++...
T Consensus 93 ~~v~~----~m~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g-~~~Giit~~dil~~~~~~ 151 (165)
T 3fhm_A 93 QSVSV----AMTKN-VVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-G-RLAGIISIGDVVKARIGE 151 (165)
T ss_dssp SBGGG----TSBSS-CCCBCTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHHTTCC
T ss_pred CCHHH----HhcCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHHHHHHHHH
Confidence 67777 78764 899999999999999999999999999999 7 999999999999997543
No 80
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.64 E-value=1.5e-15 Score=133.69 Aligned_cols=148 Identities=17% Similarity=0.259 Sum_probs=107.5
Q ss_pred cccccccccCCcccCC---eeEe--CCCCcHHHHHHHHHhcCCCeeEEE--eCCCCeEEEEEeHHHHHHHhhCCcccc-c
Q 014353 254 KKKLSEIGLPIMSANH---IVKV--YEDEPVLQAFKLMRRKKIGGIPVV--EKGGNKAVGNISLRDIQFLLTAPEIYH-D 325 (426)
Q Consensus 254 ~~~v~~~~~~im~~~~---~~~v--~~~~~v~~a~~~m~~~~~~~lpVv--d~~~~~lvGiIs~~Dl~~~~~~~~~~~-~ 325 (426)
..++++ +|.+.. ++++ .+++++.+|++.|.+++++++||+ |++| +++|+||.+|+++.+..+.... .
T Consensus 10 ~~~v~d----im~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~-~lvGiit~~dl~~~~~~~~~~~~~ 84 (185)
T 2j9l_A 10 KTLAMD----VMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQ-RLVGFVLRRDLIISIENARKKQDG 84 (185)
T ss_dssp CCBHHH----HSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTC-BEEEEEEHHHHHHHHHHHHTSCSC
T ss_pred cCcHHH----HhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCC-eEEEEEEHHHHHHHHHhhcccCCC
Confidence 456777 787631 6788 999999999999999999999999 6777 9999999999998864321000 0
Q ss_pred cccccHHHHHHH---HHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 014353 326 YRSITAKNFLTA---VRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRL 402 (426)
Q Consensus 326 ~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l 402 (426)
+.......+... .........++.++|.+++.++++++++.+|++.|.+++++++||+| +|+++|+||..||++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l 163 (185)
T 2j9l_A 85 VVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHI 163 (185)
T ss_dssp CCTTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred ccccceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence 000000000000 00000011245567777999999999999999999999999999999 89999999999999999
Q ss_pred HhCCC
Q 014353 403 VHEPP 407 (426)
Q Consensus 403 ~~~~~ 407 (426)
.+...
T Consensus 164 ~~~~~ 168 (185)
T 2j9l_A 164 AQMAN 168 (185)
T ss_dssp HHHCC
T ss_pred HHhhc
Confidence 75543
No 81
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.63 E-value=1.1e-15 Score=131.00 Aligned_cols=120 Identities=24% Similarity=0.379 Sum_probs=99.9
Q ss_pred CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCC
Q 014353 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHE 348 (426)
Q Consensus 269 ~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 348 (426)
+++++.+++++.+|++.|.+++++++||+| +| +++|+||.+|+++.+...... .. ..++.++|
T Consensus 22 ~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~-~~~Givt~~dl~~~~~~~~~~--~~-------~~~v~~~m------ 84 (157)
T 4fry_A 22 TIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GD-DIAGIVTERDYARKVVLQERS--SK-------ATRVEEIM------ 84 (157)
T ss_dssp CCCEEETTSBHHHHHHHHHHHTCSEEEEES-SS-SEEEEEEHHHHHHHSGGGTCC--SS-------SCBHHHHS------
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEee-CC-EEEEEEEHHHHHHHHHhccCC--cc-------ccCHHHHc------
Confidence 379999999999999999999999999955 56 999999999999886543210 00 12344444
Q ss_pred CCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCcc
Q 014353 349 DSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYF 410 (426)
Q Consensus 349 ~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~~~ 410 (426)
.+++.++.+++++.+++++|.+++++++||+| +|+++|+||.+||++++..+.....
T Consensus 85 ----~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~~~~~ 141 (157)
T 4fry_A 85 ----TAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQQFTI 141 (157)
T ss_dssp ----BSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCCCC
T ss_pred ----CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHHHhhH
Confidence 44889999999999999999999999999999 7999999999999999998765433
No 82
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.63 E-value=3.3e-15 Score=140.71 Aligned_cols=127 Identities=24% Similarity=0.355 Sum_probs=105.2
Q ss_pred hccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhc-----CCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccc
Q 014353 252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRK-----KIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDY 326 (426)
Q Consensus 252 ~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~-----~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~ 326 (426)
+...++++ +|+++ ++++.+++++.++++.|.+. +++++||+|+++ +++|+||.+|++... .
T Consensus 132 ~~~~~v~~----iM~~~-~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~-~lvGivt~~dll~~~--~------ 197 (278)
T 2yvy_A 132 YEEDEAGG----LMTPE-YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKG-RLKGVLSLRDLIVAD--P------ 197 (278)
T ss_dssp SCTTBGGG----TCBSC-CCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTC-BEEEEEEHHHHHHSC--T------
T ss_pred CCcchHHh----hcCCC-ceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCC-CEEEEEEHHHHhcCC--C------
Confidence 33456777 89875 99999999999999999987 789999999887 999999999998641 1
Q ss_pred ccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353 327 RSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP 406 (426)
Q Consensus 327 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~ 406 (426)
..++.++|.+++.+|++++++.++++.|.+++++++||||++|+++|+||..||++.+.++.
T Consensus 198 ------------------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~e~ 259 (278)
T 2yvy_A 198 ------------------RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEA 259 (278)
T ss_dssp ------------------TCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC----
T ss_pred ------------------CCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHHHh
Confidence 12566777779999999999999999999999999999999999999999999999998776
Q ss_pred CCcc
Q 014353 407 PGYF 410 (426)
Q Consensus 407 ~~~~ 410 (426)
...+
T Consensus 260 ~ed~ 263 (278)
T 2yvy_A 260 TEDI 263 (278)
T ss_dssp ----
T ss_pred HHHH
Confidence 5443
No 83
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.63 E-value=2.8e-15 Score=130.97 Aligned_cols=133 Identities=15% Similarity=0.194 Sum_probs=110.9
Q ss_pred CChhHH--Hhhh--hccCCccCCCCCC--CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehH
Q 014353 41 LSPTEK--LNAC--FESIPVEAFPPPP--SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFA 114 (426)
Q Consensus 41 ~~~~~~--~~~~--~~~~~~~~~~~~~--~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~ 114 (426)
++.++. ++.. |..+++.++ |+ ++++++++++++.+|+++|.++++.++||+|.+. ++++|+|+..
T Consensus 19 l~~~e~~~i~~~l~l~~~~v~di--M~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-------~~lvGivt~~ 89 (173)
T 3ocm_A 19 FGVEERNMVSGVLTLAERSIRSI--MTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSL-------DEVVGIGRAK 89 (173)
T ss_dssp CCHHHHHHHHHHHHHTTSCSTTT--SEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSST-------TSEEEEEEHH
T ss_pred cCHHHHHHHHHHhccCCCCHHHh--CCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCC-------CCEEEEEEHH
Confidence 666543 4443 567899998 84 5799999999999999999999999999999754 7999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcE
Q 014353 115 GIAVWILHQSEPPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFL 194 (426)
Q Consensus 115 di~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~ 194 (426)
||+.++.... ..++. ++. ++.
T Consensus 90 Dl~~~~~~~~-----------------------------------------------------~~~v~-~~~-----~~~ 110 (173)
T 3ocm_A 90 DLVADLITEG-----------------------------------------------------RVRRN-RLR-----DPI 110 (173)
T ss_dssp HHHHHHHHHS-----------------------------------------------------SCCGG-GSB-----CCC
T ss_pred HHHHHHhcCC-----------------------------------------------------cchhH-hcC-----CCe
Confidence 9987754321 12455 443 778
Q ss_pred EecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353 195 ALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAE 242 (426)
Q Consensus 195 ~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~ 242 (426)
++.+++++.+++..|.+++++.+||+| ++|+++|+||..|++..+..
T Consensus 111 ~v~~~~~l~~al~~m~~~~~~~~~Vvd-e~g~lvGiIT~~Dil~~l~~ 157 (173)
T 3ocm_A 111 IVHESIGILRLMDTLKRSRGQLVLVAD-EFGAIEGLVTPIDVFEAIAG 157 (173)
T ss_dssp EECGGGCHHHHHHHHHHSTTCCEEEEC-TTCCEEEEECHHHHHHHHHC
T ss_pred EECCCCcHHHHHHHHHHcCCeEEEEEe-CCCCEEEEEeHHHHHHHHhC
Confidence 999999999999999999999999999 48999999999999999864
No 84
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.62 E-value=6.7e-15 Score=122.70 Aligned_cols=122 Identities=15% Similarity=0.253 Sum_probs=105.0
Q ss_pred chhhhcc---ccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcccc
Q 014353 180 KVRDIAG---SFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKK 256 (426)
Q Consensus 180 ~v~~i~~---~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~ 256 (426)
+++++|. . ++.++.+++++.+++..|.+++++++||+| +++++|+++..|+++.+..... .....+
T Consensus 7 ~v~~im~~~~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl~~~~~~~~~-----~~~~~~ 75 (135)
T 2rc3_A 7 TVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVMK--DEKLVGILTERDFSRKSYLLDK-----PVKDTQ 75 (135)
T ss_dssp BHHHHHHHHCC----CCCEECTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHGGGSSS-----CGGGSB
T ss_pred eHHHHHhcCCC----CcEEECCCCcHHHHHHHHHhcCCCEEEEEE--CCEEEEEEehHHHHHHHHHcCC-----CcccCC
Confidence 6889998 5 888999999999999999999999999998 6899999999999875432210 112456
Q ss_pred ccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353 257 LSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA 319 (426)
Q Consensus 257 v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~ 319 (426)
+.+ +|.++ +.++.+++++.++++.|.+++++.+||+| +| +++|+||.+|+++++..
T Consensus 76 v~~----~m~~~-~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g-~~~Giit~~dll~~~~~ 131 (135)
T 2rc3_A 76 VKE----IMTRQ-VAYVDLNNTNEDCMALITEMRVRHLPVLD-DG-KVIGLLSIGDLVKDAIS 131 (135)
T ss_dssp GGG----TSBCS-CCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHHHC
T ss_pred HHH----hccCC-CeEECCCCcHHHHHHHHHHhCCCEEEEEe-CC-EEEEEEEHHHHHHHHHh
Confidence 777 78774 89999999999999999999999999999 67 99999999999998754
No 85
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.62 E-value=1.1e-15 Score=130.80 Aligned_cols=130 Identities=19% Similarity=0.314 Sum_probs=108.3
Q ss_pred hccCCccCCCCCC--CceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCC
Q 014353 51 FESIPVEAFPPPP--SQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPS 128 (426)
Q Consensus 51 ~~~~~~~~~~~~~--~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~ 128 (426)
+...++.++ |+ ++++++++++++.+|+++|.++++..+||+|++ |+++|+||..||+.++.....
T Consensus 12 l~~~~v~di--m~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~--------~~~~Giit~~dl~~~~~~~~~--- 78 (156)
T 3ctu_A 12 FLLGQEETF--LTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE--------KQFVGTIGLRDIMAYQMEHDL--- 78 (156)
T ss_dssp HHHTTGGGG--EEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC---------CBEEEEEEHHHHHHHHHHHTC---
T ss_pred HHHHHHHHH--cCcccCceEECCCCCHHHHHHHHHHCCCceEeEECCC--------CEEEEEEcHHHHHHHHHhccc---
Confidence 445566777 65 789999999999999999999999999999987 899999999999988664310
Q ss_pred CCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHH
Q 014353 129 PRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLL 208 (426)
Q Consensus 129 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~ 208 (426)
........++.++|.. ++.++.+++++.+++..
T Consensus 79 -------------------------------------------~~~~~~~~~v~~~m~~----~~~~v~~~~~l~~a~~~ 111 (156)
T 3ctu_A 79 -------------------------------------------SQEIMADTDIVHMTKT----DVAVVSPDFTITEVLHK 111 (156)
T ss_dssp -------------------------------------------CHHHHTTSBGGGGCBC----SCCCBCSSCCHHHHHHH
T ss_pred -------------------------------------------cccccccCcHHHhccC----CceeeCCCCcHHHHHHH
Confidence 0112235678899986 88899999999999999
Q ss_pred HhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhc
Q 014353 209 LSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAEC 243 (426)
Q Consensus 209 l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~ 243 (426)
|.+++ ++||+| ++|+++|+||..|+++++.+.
T Consensus 112 ~~~~~--~lpVvd-~~g~~~Giit~~dil~~l~~~ 143 (156)
T 3ctu_A 112 LVDES--FLPVVD-AEGIFQGIITRKSILKAVNAL 143 (156)
T ss_dssp TTTSS--EEEEEC-TTSBEEEEEETTHHHHHHHHH
T ss_pred HHHcC--eEEEEc-CCCeEEEEEEHHHHHHHHHHH
Confidence 99876 799999 489999999999999998654
No 86
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.62 E-value=1.5e-15 Score=126.24 Aligned_cols=123 Identities=15% Similarity=0.289 Sum_probs=105.2
Q ss_pred ccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHH-HHHhccCcchhhhhcccc
Q 014353 178 NTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIH-MLAECAGLEWFESWGKKK 256 (426)
Q Consensus 178 ~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~-~l~~~~~~~~~~~~~~~~ 256 (426)
..+++++|.+ ++.++.+++++.+++..|.+++++++||+| ++++++|+++..|++. ++..... ....+
T Consensus 7 ~~~v~~im~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~~Givt~~dl~~~~~~~~~~------~~~~~ 75 (133)
T 1y5h_A 7 MTTARDIMNA----GVTCVGEHETLTAAAQYMREHDIGALPICG-DDDRLHGMLTDRDIVIKGLAAGLD------PNTAT 75 (133)
T ss_dssp -CCHHHHSEE----TCCCEETTSBHHHHHHHHHHHTCSEEEEEC-GGGBEEEEEEHHHHHHTTGGGTCC------TTTSB
T ss_pred hcCHHHHhcC----CceEeCCCCCHHHHHHHHHHhCCCeEEEEC-CCCeEEEEEeHHHHHHHHHhcCCC------ccccC
Confidence 4578999987 888999999999999999999999999998 4799999999999984 5543321 12356
Q ss_pred ccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353 257 LSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT 318 (426)
Q Consensus 257 v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~ 318 (426)
+.+ +|.+. ++++.+++++.++++.|.+++++++||+|+ | +++|+||.+||++.+.
T Consensus 76 v~~----~m~~~-~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g-~~~Giit~~dil~~l~ 130 (133)
T 1y5h_A 76 AGE----LARDS-IYYVDANASIQEMLNVMEEHQVRRVPVISE-H-RLVGIVTEADIARHLP 130 (133)
T ss_dssp HHH----HHTTC-CCCEETTCCHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHTCC
T ss_pred HHH----HhcCC-CEEECCCCCHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHHHHHHH
Confidence 777 77764 899999999999999999999999999998 7 9999999999998864
No 87
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.61 E-value=2.4e-15 Score=132.60 Aligned_cols=125 Identities=18% Similarity=0.270 Sum_probs=107.9
Q ss_pred CCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCC
Q 014353 54 IPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSS 133 (426)
Q Consensus 54 ~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~ 133 (426)
++++++ |.++++++++++++.+|+++|.++++.++||+|++ |+++|+|+..||+.++....
T Consensus 9 ~~v~~i--m~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~--------g~~vGivt~~dl~~~~~~~~--------- 69 (184)
T 1pvm_A 9 MRVEKI--MNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN--------GNDVGLLSERSIIKRFIPRN--------- 69 (184)
T ss_dssp CBGGGT--SBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT--------SCEEEEEEHHHHHHHTGGGC---------
T ss_pred cCHHHh--cCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CcEEEEEeHHHHHHHHhhcc---------
Confidence 567777 88899999999999999999999999999999987 89999999999987644210
Q ss_pred CchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcC
Q 014353 134 PSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYK 213 (426)
Q Consensus 134 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~ 213 (426)
......++.++|.. ++.++.+++++.+++..|.+++
T Consensus 70 ----------------------------------------~~~~~~~v~~im~~----~~~~v~~~~~l~~a~~~m~~~~ 105 (184)
T 1pvm_A 70 ----------------------------------------KKPDEVPIRLVMRK----PIPKVKSDYDVKDVAAYLSENG 105 (184)
T ss_dssp ----------------------------------------CCGGGSBGGGTSBS----SCCEEETTCBHHHHHHHHHHHT
T ss_pred ----------------------------------------cCcccCCHHHHhCC----CCcEECCCCCHHHHHHHHHHcC
Confidence 01224578899986 8889999999999999999999
Q ss_pred CcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353 214 MKSIPVVDLGEGTIDNIITQSSVIHMLAE 242 (426)
Q Consensus 214 ~~~ipVvd~~~~~l~Giis~~Dl~~~l~~ 242 (426)
++++||+| ++|+++|+||..|+++++..
T Consensus 106 ~~~lpVvd-~~g~~~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 106 LERCAVVD-DPGRVVGIVTLTDLSRYLSR 133 (184)
T ss_dssp CSEEEEEC-TTCCEEEEEEHHHHTTTSCH
T ss_pred CcEEEEEc-CCCeEEEEEEHHHHHHHHHh
Confidence 99999999 46999999999999887653
No 88
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.61 E-value=2.8e-15 Score=129.15 Aligned_cols=135 Identities=17% Similarity=0.219 Sum_probs=107.6
Q ss_pred hccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHCCcccceeeec--CCCCCcccccceEEEeehHHHHHHHHhhcCCCC
Q 014353 51 FESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDV--DAPEDASWIDRYIGIVEFAGIAVWILHQSEPPS 128 (426)
Q Consensus 51 ~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~--~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~ 128 (426)
...++++++ |.++++++++++++.+|+++|.+++++++||+|+ + ++++|+||..||+.++......
T Consensus 10 ~~~~~v~di--m~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~--------~~~~Givt~~dl~~~~~~~~~~-- 77 (164)
T 2pfi_A 10 SHHVRVEHF--MNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTES--------QILVGIVQRAQLVQALQAEPPS-- 77 (164)
T ss_dssp CCSCBHHHH--CBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTT--------CBEEEEEEHHHHHHHHHC------
T ss_pred ccCCCHHHH--cCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCC--------CEEEEEEEHHHHHHHHHhhccc--
Confidence 345677777 8889999999999999999999999999999997 5 8999999999998775432100
Q ss_pred CCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhcccccc-CC-cEEecCCCCHHHHH
Q 014353 129 PRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRW-AP-FLALQKSNSFLTML 206 (426)
Q Consensus 129 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~-~~-~~~v~~~~~l~~~l 206 (426)
.......++.++|..... .+ +.++.+++++.+++
T Consensus 78 --------------------------------------------~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~ 113 (164)
T 2pfi_A 78 --------------------------------------------RAPGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQ 113 (164)
T ss_dssp -----------------------------------------------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHH
T ss_pred --------------------------------------------cCCcccchhhhhhcccccccCCceEECCCCcHHHHH
Confidence 000123457777765110 01 67899999999999
Q ss_pred HHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhc
Q 014353 207 LLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAEC 243 (426)
Q Consensus 207 ~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~ 243 (426)
..|.+++++++||+| +|+++|+||..|+++++.+.
T Consensus 114 ~~m~~~~~~~lpVvd--~g~l~Giit~~dil~~~~~~ 148 (164)
T 2pfi_A 114 NLFKLLNLQSLFVTS--RGRAVGCVSWVEMKKAISNL 148 (164)
T ss_dssp HHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHHHHH
T ss_pred HHHHHhCCCEEEEEE--CCEEEEEEEHHHHHHHHHhh
Confidence 999999999999999 58999999999999998653
No 89
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.61 E-value=3.8e-15 Score=127.50 Aligned_cols=132 Identities=19% Similarity=0.288 Sum_probs=108.1
Q ss_pred hhccCCccCCCCCCC--ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCC
Q 014353 50 CFESIPVEAFPPPPS--QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPP 127 (426)
Q Consensus 50 ~~~~~~~~~~~~~~~--~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~ 127 (426)
.+..++++++ |.+ +++++++++++.+|++.|.++++..+||+|++ |+++|+||..|++.++.....
T Consensus 7 ~l~~~~v~~i--m~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~--------~~~~Givt~~dl~~~~~~~~~-- 74 (157)
T 2emq_A 7 EFMQMTVKPF--LIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS--------YKLHGLISMTMMMDAILGLER-- 74 (157)
T ss_dssp ---CCBSTTT--CEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTT--------CCEEEEEEHHHHHHHSBCSSS--
T ss_pred hHhhCcHHhh--ccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCC--------CCEEEEeeHHHHHHHHhcccc--
Confidence 4567888888 765 89999999999999999999999999999987 899999999999865332100
Q ss_pred CCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHH
Q 014353 128 SPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLL 207 (426)
Q Consensus 128 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~ 207 (426)
+ ........++.++|.. ++.++.+++++.+++.
T Consensus 75 --------------------------------------~-----~~~~~~~~~v~~~m~~----~~~~v~~~~~l~~a~~ 107 (157)
T 2emq_A 75 --------------------------------------I-----EFERLETMKVEEVMNR----NIPRLRLDDSLMKAVG 107 (157)
T ss_dssp --------------------------------------B-----CGGGGGTCBGGGTCBC----CCCEEETTSBHHHHHH
T ss_pred --------------------------------------c-----chHHhcCCcHHHHhCC----CCceecCCCcHHHHHH
Confidence 0 0112335678899987 8889999999999999
Q ss_pred HHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhc
Q 014353 208 LLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAEC 243 (426)
Q Consensus 208 ~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~ 243 (426)
.|.++++ +||+| ++|+++|+||..|+++++...
T Consensus 108 ~m~~~~~--l~Vvd-~~g~~~Giit~~dil~~~~~~ 140 (157)
T 2emq_A 108 LIVNHPF--VCVEN-DDGYFAGIFTRREVLKQLNKQ 140 (157)
T ss_dssp HHHHSSE--EEEEC-SSSSEEEEEEHHHHHHHHHHT
T ss_pred HHhhCCE--EEEEc-CCCeEEEEEEHHHHHHHHHHH
Confidence 9999887 99999 479999999999999998644
No 90
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.60 E-value=7.9e-15 Score=125.73 Aligned_cols=132 Identities=20% Similarity=0.223 Sum_probs=108.8
Q ss_pred ccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcE-eEEEeCCCCeEEEEEeHHHHHHHHHhc-----cCcc
Q 014353 174 EFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKS-IPVVDLGEGTIDNIITQSSVIHMLAEC-----AGLE 247 (426)
Q Consensus 174 ~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~-ipVvd~~~~~l~Giis~~Dl~~~l~~~-----~~~~ 247 (426)
..+...+++++|.+ ++.++.+++++.+++..|.++++++ +||+|. + +++|++|..|+++++... ....
T Consensus 11 ~~~~~~~v~~im~~----~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~-~-~~vGivt~~dl~~~~~~~~~~~~~~~~ 84 (157)
T 1o50_A 11 HHMKVKDVCKLISL----KPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-N-KLVGMIPVMHLLKVSGFHFFGFIPKEE 84 (157)
T ss_dssp TTCBHHHHTTSSCC----CCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-T-EEEEEEEHHHHHHHHHHHHHCCCC---
T ss_pred hhhccccHhhcccC----CCceECCCCCHHHHHHHHHhCCCCccEEEEEC-C-EEEEEEEHHHHHHHHhhhHHhhhccHH
Confidence 34566789999987 8999999999999999999999999 999994 5 999999999999876421 0000
Q ss_pred h----hhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353 248 W----FESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT 318 (426)
Q Consensus 248 ~----~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~ 318 (426)
. .......++.+ +|.+ ++++.+++++.++++.|.+++++++||+|++| +++|+||.+||++.+.
T Consensus 85 ~~~~~~~~~~~~~v~~----im~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~~vGiit~~dll~~l~ 152 (157)
T 1o50_A 85 LIRSSMKRLIAKNASE----IMLD--PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKG-EIVGDLNSLEILLALW 152 (157)
T ss_dssp ----CCCCCSSCBHHH----HCBC--CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHH----HcCC--CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCC-EEEEEEEHHHHHHHHH
Confidence 0 01122456666 7875 89999999999999999999999999999877 9999999999998864
No 91
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.60 E-value=1.8e-15 Score=132.53 Aligned_cols=152 Identities=20% Similarity=0.269 Sum_probs=107.4
Q ss_pred CCccCCCCCCC--ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCC
Q 014353 54 IPVEAFPPPPS--QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRS 131 (426)
Q Consensus 54 ~~~~~~~~~~~--~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~ 131 (426)
++++++ |.+ +++++++++++.+|+++|.++++..+||+|++ ++++|+||..||+++..........
T Consensus 4 ~~v~di--m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~--------~~~~Givt~~dl~~~~~~~~~~~~~-- 71 (180)
T 3sl7_A 4 YTVGDF--MTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN--------WTLVGVVSDYDLLALDSISGRSQND-- 71 (180)
T ss_dssp CBHHHH--SEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT--------CBEEEEEEHHHHTCC------------
T ss_pred eeHHHh--cCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCC--------CeEEEEEEHHHHHhhhhhccccCCc--
Confidence 455565 665 89999999999999999999999999999988 8999999999997532211000000
Q ss_pred CCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhh
Q 014353 132 SSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSK 211 (426)
Q Consensus 132 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~ 211 (426)
.. .+. . .......+...-.........++.++|.. ++.++.+++++.+++..|.+
T Consensus 72 -----------~~--------~~~-~-~~~~~~~~~~~~~~~~~~~~~~v~~~m~~----~~~~v~~~~~l~~a~~~m~~ 126 (180)
T 3sl7_A 72 -----------TN--------LFP-D-VDSTWKTFNELQKLISKTYGKVVGDLMTP----SPLVVRDSTNLEDAARLLLE 126 (180)
T ss_dssp ------------------------------CCCSHHHHHHHHHTTTTCBHHHHSEE----SCCCEETTSBHHHHHHHHTT
T ss_pred -----------cc--------ccc-c-ccchhhhhHHHHHHHhccccccHHHHhCC----CceEeCCCCcHHHHHHHHHH
Confidence 00 000 0 00000000000000012345689999987 78899999999999999999
Q ss_pred cCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhc
Q 014353 212 YKMKSIPVVDLGEGTIDNIITQSSVIHMLAEC 243 (426)
Q Consensus 212 ~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~ 243 (426)
++++++||+| ++|+++|+||..|+++++...
T Consensus 127 ~~~~~lpVvd-~~g~~vGiit~~dil~~~~~~ 157 (180)
T 3sl7_A 127 TKFRRLPVVD-ADGKLIGILTRGNVVRAALQI 157 (180)
T ss_dssp STTCEEEEEC-TTCBEEEEEEHHHHHHHHHHH
T ss_pred cCCCEEEEEC-CCCeEEEEEEHHHHHHHHHHH
Confidence 9999999999 489999999999999998643
No 92
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.60 E-value=1.1e-14 Score=122.59 Aligned_cols=126 Identities=16% Similarity=0.284 Sum_probs=103.3
Q ss_pred ccchhh---hccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcc
Q 014353 178 NTKVRD---IAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGK 254 (426)
Q Consensus 178 ~~~v~~---i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~ 254 (426)
..++++ +|.. ++.++.+++++.+++..|.+++++++||+| ++++++|+++..|+++.+..... ....
T Consensus 7 ~~~v~~~~~~~~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~~Givt~~dl~~~~~~~~~-----~~~~ 76 (144)
T 2nyc_A 7 KIPIGDLNIITQD----NMKSCQMTTPVIDVIQMLTQGRVSSVPIID-ENGYLINVYEAYDVLGLIKGGIY-----NDLS 76 (144)
T ss_dssp GSBGGGSSCCBCS----SCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHHHTC---------CC
T ss_pred hcchhhcCCCCCC----CceEECCCCcHHHHHHHHHHcCcceeeEEc-CCCcEEEEEcHHHHHHHhccccc-----ccCC
Confidence 456777 5654 788999999999999999999999999999 47999999999999988754210 0113
Q ss_pred ccccccccCCcccC-----CeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353 255 KKLSEIGLPIMSAN-----HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT 318 (426)
Q Consensus 255 ~~v~~~~~~im~~~-----~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~ 318 (426)
.++.+ +|... +++++.+++++.++++.|.+++++++||+|++| +++|+||.+||++.+.
T Consensus 77 ~~v~~----~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g-~~~Giit~~dil~~l~ 140 (144)
T 2nyc_A 77 LSVGE----ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG-RLVGVLTLSDILKYIL 140 (144)
T ss_dssp SBHHH----HHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHH
T ss_pred ccHHH----HHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCC-CEEEEEEHHHHHHHHH
Confidence 46666 56541 489999999999999999999999999999888 9999999999998864
No 93
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.59 E-value=2.4e-15 Score=142.17 Aligned_cols=123 Identities=20% Similarity=0.333 Sum_probs=105.3
Q ss_pred hccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhc-----CCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccc
Q 014353 252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRK-----KIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDY 326 (426)
Q Consensus 252 ~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~-----~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~ 326 (426)
+...++++ +|+++ ++++.+++++.++++.|.++ +++++||+|+++ +++|+||.+|++....
T Consensus 134 ~~~~~v~~----iM~~~-~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~-~lvGivt~~dll~~~~-------- 199 (286)
T 2oux_A 134 YEDETAGA----IMTTE-FVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQEN-HLVGVISLRDLIVNDD-------- 199 (286)
T ss_dssp SCTTBHHH----HCBSC-CCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTC-BEEEEEEHHHHTTSCT--------
T ss_pred CChHHHHH----hCCCC-ceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCC-eEEEEEEHHHHHcCCC--------
Confidence 34567777 88875 99999999999999999987 888999999887 9999999999976411
Q ss_pred ccccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353 327 RSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP 406 (426)
Q Consensus 327 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~ 406 (426)
..++.++| .+++.+|++++++.+|++.|.+++++++||||++|+++|+||..||++.+..+.
T Consensus 200 --------~~~v~~im----------~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e~ 261 (286)
T 2oux_A 200 --------DTLIADIL----------NERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDEA 261 (286)
T ss_dssp --------TSBHHHHS----------BSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHH
T ss_pred --------CCcHHHHc----------CCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHHh
Confidence 11244444 448999999999999999999999999999999999999999999999987654
No 94
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.58 E-value=1.2e-14 Score=130.45 Aligned_cols=122 Identities=13% Similarity=0.257 Sum_probs=108.0
Q ss_pred cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhc---CCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhh
Q 014353 175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKY---KMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFES 251 (426)
Q Consensus 175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~---~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~ 251 (426)
.+...+++++|.+ .++++.++.++.+++..|.++ +++++||+| ++++++|+++..|++...
T Consensus 50 ~~~~~~v~~iM~~----~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd-~~~~lvGivt~~dll~~~----------- 113 (205)
T 3kxr_A 50 QYSENEIGRYTDH----QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVD-EADKYLGTVRRYDIFKHE----------- 113 (205)
T ss_dssp HSCTTCGGGGCBC----CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEEC-TTCBEEEEEEHHHHTTSC-----------
T ss_pred CCCcchHHhhccC----ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEc-CCCeEEEEEEHHHHHhCC-----------
Confidence 4677899999997 899999999999999999987 889999999 489999999999986421
Q ss_pred hccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353 252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA 319 (426)
Q Consensus 252 ~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~ 319 (426)
...++.+ +|+++ ++++.+++++.++++.|.+++++.+||||++| +++|+||..|++..+..
T Consensus 114 -~~~~v~~----im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g-~lvGiIT~~Dil~~i~~ 174 (205)
T 3kxr_A 114 -PHEPLIS----LLSED-SRALTANTTLLDAAEAIEHSREIELPVIDDAG-ELIGRVTLRAATALVRE 174 (205)
T ss_dssp -TTSBGGG----GCCSS-CCCEETTSCHHHHHHHHHTSSCSEEEEECTTS-BEEEEEEHHHHHHHHHH
T ss_pred -CcchHHH----HhcCC-CeEECCCCCHHHHHHHHHhcCCCEEEEEcCCC-eEEEEEEHHHHHHHHHH
Confidence 1356777 88765 89999999999999999999999999999988 99999999999998753
No 95
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.57 E-value=2.1e-14 Score=123.03 Aligned_cols=128 Identities=22% Similarity=0.301 Sum_probs=107.1
Q ss_pred cchhhhccccc--cCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcccc
Q 014353 179 TKVRDIAGSFR--WAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKK 256 (426)
Q Consensus 179 ~~v~~i~~~~~--~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~ 256 (426)
.+++++|.+.. ..++.++.+++++.+++..|.+++++++||++ +++++|++|..|+++.+...... ....+
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~-----~~~~~ 79 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQERS-----SKATR 79 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES--SSSEEEEEEHHHHHHHSGGGTCC-----SSSCB
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHHhccCC-----ccccC
Confidence 46899998410 02568999999999999999999999999954 79999999999999987543211 12456
Q ss_pred ccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCC
Q 014353 257 LSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAP 320 (426)
Q Consensus 257 v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~ 320 (426)
+.+ +|.++ ++++.+++++.+++++|.+++++++||+| +| +++|+||.+||++++...
T Consensus 80 v~~----~m~~~-~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g-~~~Giit~~dil~~l~~~ 136 (157)
T 4fry_A 80 VEE----IMTAK-VRYVEPSQSTDECMALMTEHRMRHLPVLD-GG-KLIGLISIGDLVKSVIAD 136 (157)
T ss_dssp HHH----HSBSS-CCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHHHTT
T ss_pred HHH----HcCCC-CcEECCCCcHHHHHHHHHHcCCCEEEEEE-CC-EEEEEEEHHHHHHHHHHH
Confidence 777 78764 89999999999999999999999999999 57 999999999999998654
No 96
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.57 E-value=2.5e-14 Score=125.77 Aligned_cols=135 Identities=17% Similarity=0.208 Sum_probs=107.7
Q ss_pred ccccchhhhccccccCCcEEe--cCCCCHHHHHHHHhhcCCcEeEEE--eCCCCeEEEEEeHHHHHHHHHhccCcc--h-
Q 014353 176 YKNTKVRDIAGSFRWAPFLAL--QKSNSFLTMLLLLSKYKMKSIPVV--DLGEGTIDNIITQSSVIHMLAECAGLE--W- 248 (426)
Q Consensus 176 ~~~~~v~~i~~~~~~~~~~~v--~~~~~l~~~l~~l~~~~~~~ipVv--d~~~~~l~Giis~~Dl~~~l~~~~~~~--~- 248 (426)
....+++++|.+....+++++ .+++++.+++..|.+++++++||+ | ++++++|+||..|+++.+....... .
T Consensus 8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d-~~~~lvGiit~~dl~~~~~~~~~~~~~~~ 86 (185)
T 2j9l_A 8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR-ESQRLVGFVLRRDLIISIENARKKQDGVV 86 (185)
T ss_dssp -CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCT-TTCBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred hccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEEC-CCCeEEEEEEHHHHHHHHHhhcccCCCcc
Confidence 456789999986211126788 999999999999999999999999 5 4799999999999999875431100 0
Q ss_pred ---------------hhhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHH
Q 014353 249 ---------------FESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDI 313 (426)
Q Consensus 249 ---------------~~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl 313 (426)
.......++.+ +|.+. ++++.+++++.++++.|.+++++++||+| +| +++|+||.+||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~v~~----im~~~-~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g-~~vGiit~~dl 159 (185)
T 2j9l_A 87 STSIIYFTEHSPPLPPYTPPTLKLRN----ILDLS-PFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NG-RLLGIITKKDV 159 (185)
T ss_dssp TTCEEECSSSCCCCCTTCCCCEECGG----GEESS-CCEEETTSBHHHHHHHHHHHTCSEEEEEE-TT-EEEEEEEHHHH
T ss_pred ccceeecccCCcccccccccCccHHH----hhCcC-CeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CC-EEEEEEEHHHH
Confidence 00112345666 78764 89999999999999999999999999999 67 99999999999
Q ss_pred HHHhh
Q 014353 314 QFLLT 318 (426)
Q Consensus 314 ~~~~~ 318 (426)
++.+.
T Consensus 160 l~~l~ 164 (185)
T 2j9l_A 160 LKHIA 164 (185)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 97
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.57 E-value=1.5e-14 Score=124.18 Aligned_cols=131 Identities=18% Similarity=0.250 Sum_probs=107.5
Q ss_pred ccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccc
Q 014353 176 YKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKK 255 (426)
Q Consensus 176 ~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~ 255 (426)
+...+++++|.+. .++.++.+++++.+++..|.+++++++||+| ++++++|++|..|++..+...... ........
T Consensus 11 l~~~~v~~im~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~~~lvGivt~~dl~~~~~~~~~~-~~~~~~~~ 86 (159)
T 1yav_A 11 LLEATVGQFMIEA--DKVAHVQVGNNLEHALLVLTKTGYTAIPVLD-PSYRLHGLIGTNMIMNSIFGLERI-EFEKLDQI 86 (159)
T ss_dssp CTTCBHHHHSEEG--GGSCCEETTCBHHHHHHHHHHHCCSEEEEEC-TTCBEEEEEEHHHHHHHHBCSSSB-CGGGTTTS
T ss_pred HhHhhHHHHhCCc--cceEEECCCCcHHHHHHHHHhCCCcEEEEEC-CCCCEEEEeEHHHHHHHhhhhccc-chhhhccC
Confidence 4467899999731 1477899999999999999999999999999 478999999999999887542211 11123345
Q ss_pred cccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353 256 KLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT 318 (426)
Q Consensus 256 ~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~ 318 (426)
++.+ +|.+. ++++.+++++.++++.|.++++ +||+|++| +++|+||.+||++++.
T Consensus 87 ~v~~----~m~~~-~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g-~~vGiit~~dil~~~~ 141 (159)
T 1yav_A 87 TVEE----VMLTD-IPRLHINDPIMKGFGMVINNGF--VCVENDEQ-VFEGIFTRRVVLKELN 141 (159)
T ss_dssp BHHH----HSBCS-CCEEETTSBHHHHHHHTTTCSE--EEEECTTC-BEEEEEEHHHHHHHHH
T ss_pred CHHH----hcCCC-CceEcCCCCHHHHHHHHHhCCE--EEEEeCCC-eEEEEEEHHHHHHHHH
Confidence 6777 78764 8999999999999999999887 99999887 9999999999999864
No 98
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.53 E-value=7.7e-14 Score=128.62 Aligned_cols=135 Identities=19% Similarity=0.203 Sum_probs=105.2
Q ss_pred ccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCC-CCeEEEEEeHHHHHHHHHhcc---Cc--ch-
Q 014353 176 YKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLG-EGTIDNIITQSSVIHMLAECA---GL--EW- 248 (426)
Q Consensus 176 ~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~-~~~l~Giis~~Dl~~~l~~~~---~~--~~- 248 (426)
....+|+++|.+ +++++.+++++.++..+|.+++++++||+|.+ +++++|+|+..||+.++.... .. .+
T Consensus 10 ~~~~~v~diMt~----~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~ 85 (250)
T 2d4z_A 10 KYNIQVGDIMVR----DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAA 85 (250)
T ss_dssp CSSCBTTSSSBS----SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCC
T ss_pred cCCCChHHhcCC----CCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhh
Confidence 345689999998 89999999999999999999999999999843 368999999999998874321 00 00
Q ss_pred ----------------------hhhh------------------------------------------------------
Q 014353 249 ----------------------FESW------------------------------------------------------ 252 (426)
Q Consensus 249 ----------------------~~~~------------------------------------------------------ 252 (426)
...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (250)
T 2d4z_A 86 AEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVAS 165 (250)
T ss_dssp CCBCCC--------------------------------------------------------------------------
T ss_pred hcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCc
Confidence 0000
Q ss_pred ------------------ccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHH
Q 014353 253 ------------------GKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQ 314 (426)
Q Consensus 253 ------------------~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~ 314 (426)
...++. +.-.+|++. ++++.+++++.++..+|...|++++||++. | +++|+||++||+
T Consensus 166 ~~~~~i~~~~~~~~~~~~l~~~Vd-l~~~~md~s-P~tv~~~tsL~~v~~LF~~lglr~l~V~~~-G-rLVGIVTrkDl~ 241 (250)
T 2d4z_A 166 RFEEMLTLEEIYRWEQREKNVVVN-FETCRIDQS-PFQLVEGTSLQKTHTLFSLLGLDRAYVTSM-G-KLVGVVALAEIQ 241 (250)
T ss_dssp -CCSCCBHHHHHHHHHHHTTCBCC-TTSSCEECC-SCCBCTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHH
T ss_pred ccccccChhhhhhHHHHhcCceec-cccccccCC-CeEECCCCcHHHHHHHHHHhCCeEEEEEEC-C-EEEEEEEHHHHH
Confidence 000110 000157775 999999999999999999999999999985 6 999999999999
Q ss_pred HHhh
Q 014353 315 FLLT 318 (426)
Q Consensus 315 ~~~~ 318 (426)
+++.
T Consensus 242 kai~ 245 (250)
T 2d4z_A 242 AAIE 245 (250)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
No 99
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.50 E-value=7.7e-14 Score=140.69 Aligned_cols=121 Identities=26% Similarity=0.367 Sum_probs=104.9
Q ss_pred ccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhc-----CCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccc
Q 014353 253 GKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRK-----KIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYR 327 (426)
Q Consensus 253 ~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~-----~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~ 327 (426)
...++++ +|+++ ++++++++++.++++.|.+. +++++||+|+++ +++|+|+.+|++..- .
T Consensus 153 ~~~~v~~----iM~~~-~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~-~lvGiVt~~Dll~~~--~------- 217 (473)
T 2zy9_A 153 EEDEAGG----LMTPE-YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKG-RLKGVLSLRDLIVAD--P------- 217 (473)
T ss_dssp CTTBSTT----TCBSC-EEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTS-BEEEEEEHHHHHHSC--T-------
T ss_pred CCCCHHH----hCCCC-ceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCC-cEEEEEEHHHHhcCC--C-------
Confidence 3456666 89875 99999999999999999986 579999999887 999999999998641 1
Q ss_pred cccHHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 328 SITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 328 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
..++.++|.+++.++++++++.++++.|.+++.+.+||||++|+++|+||..|+++.+.++
T Consensus 218 -----------------~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~e 278 (473)
T 2zy9_A 218 -----------------RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE 278 (473)
T ss_dssp -----------------TSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred -----------------CCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHHH
Confidence 0144556667999999999999999999999999999999999999999999999998754
No 100
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.50 E-value=6.9e-15 Score=153.61 Aligned_cols=146 Identities=16% Similarity=0.161 Sum_probs=105.1
Q ss_pred cccccccccCCccc-CCeeEeCCCCcHHHHHHHHH-hcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCcccccc-----
Q 014353 254 KKKLSEIGLPIMSA-NHIVKVYEDEPVLQAFKLMR-RKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDY----- 326 (426)
Q Consensus 254 ~~~v~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~-~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~----- 326 (426)
..++++ +|++ ++++++++++++.++.+.|. +++++++||+|+++ +++|+|+++|+.+.+.+.......
T Consensus 452 ~~~V~d----iM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~-~lvGiVt~~DL~~~l~~~~~~~~~~~~~~ 526 (632)
T 3org_A 452 EMTARE----IMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANG-YLLGAISRKEIVDRLQHVLEDVPEPIAGH 526 (632)
T ss_dssp TSBHHH----HCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTC-BBCCEESHHHHTTTTTTC-----------
T ss_pred cCcHHH----HhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCC-eEEEEEEHHHHHHHHHHHhhhcccccccc
Confidence 345666 8883 34999999999999999999 79999999999887 999999999999886543110000
Q ss_pred ---ccccHHHHHHHHHHHhhh-------------------cCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEc
Q 014353 327 ---RSITAKNFLTAVRKYMEE-------------------HHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVD 384 (426)
Q Consensus 327 ---~~~~~~~~~~~v~~~~~~-------------------~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd 384 (426)
......++...++..... ...+.++|.+++.++++++++.+++++|.+++++++||+
T Consensus 527 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv- 605 (632)
T 3org_A 527 RTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT- 605 (632)
T ss_dssp --------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-
T ss_pred cceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-
Confidence 000001111111111110 013678999999999999999999999999999999999
Q ss_pred CCCcEEEEEeHHHHHHHHHhC
Q 014353 385 FNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 385 ~~~~liGvIT~~Dll~~l~~~ 405 (426)
++|+++|+||++||++.+.++
T Consensus 606 e~G~lvGIVT~~Dll~~~~~~ 626 (632)
T 3org_A 606 ERGKLVGIVEREDVAYGYSNS 626 (632)
T ss_dssp ETTEEEEEEEGGGTEECCCC-
T ss_pred ECCEEEEEEehhhHHHHHhhh
Confidence 689999999999998876554
No 101
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.49 E-value=5.7e-14 Score=143.89 Aligned_cols=127 Identities=13% Similarity=0.224 Sum_probs=105.1
Q ss_pred ccccccccccCCcccCCeeEeCCC-CcHHHHHHHHHhcCCCeeEEEe-CCCCeEEEEEeHHHHHHHhhCCcccccccccc
Q 014353 253 GKKKLSEIGLPIMSANHIVKVYED-EPVLQAFKLMRRKKIGGIPVVE-KGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT 330 (426)
Q Consensus 253 ~~~~v~~~~~~im~~~~~~~v~~~-~~v~~a~~~m~~~~~~~lpVvd-~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~ 330 (426)
...++++ +|+++ ++++.++ +++.+++++|.+++++++||+| +++ +++|+||.+||++.+..+...
T Consensus 382 ~~~~V~d----iM~~~-~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g-~lvGiVt~~Dll~~l~~~~~~------- 448 (527)
T 3pc3_A 382 WSLAIAE----LELPA-PPVILKSDATVGEAIALMKKHRVDQLPVVDQDDG-SVLGVVGQETLITQIVSMNRQ------- 448 (527)
T ss_dssp TTSBGGG----GCCCC-CSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTC-CEEEEEEHHHHHHHHHHHCCC-------
T ss_pred cCCcHHH----hCcCC-CeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCC-EEEEEEEHHHHHHHHHhccCc-------
Confidence 3456777 88875 9999999 9999999999999999999999 666 999999999999886432110
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCC----CcEEEEEeHHHHHHHHHhCC
Q 014353 331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFN----GNLEGVITLRDIISRLVHEP 406 (426)
Q Consensus 331 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~----~~liGvIT~~Dll~~l~~~~ 406 (426)
...++.++|.+++.++.+++++.+++++|.++++ +||||++ |+++||||++||++++..+.
T Consensus 449 -------------~~~~V~~im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~ 513 (527)
T 3pc3_A 449 -------------QSDPAIKALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK 513 (527)
T ss_dssp -------------TTSBGGGGEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred -------------CCCcHHHHhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence 0114455666699999999999999999977765 7999984 89999999999999998765
Q ss_pred C
Q 014353 407 P 407 (426)
Q Consensus 407 ~ 407 (426)
.
T Consensus 514 ~ 514 (527)
T 3pc3_A 514 Q 514 (527)
T ss_dssp C
T ss_pred c
Confidence 3
No 102
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.49 E-value=1.1e-13 Score=130.78 Aligned_cols=121 Identities=15% Similarity=0.282 Sum_probs=107.3
Q ss_pred cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhc-----CCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchh
Q 014353 175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKY-----KMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWF 249 (426)
Q Consensus 175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~-----~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~ 249 (426)
.+...+++++|.+ +++++.+++++.+++..|.++ +++++||+|. +++++|+||..|++...
T Consensus 133 ~~~~~~v~~iM~~----~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~-~~~lvGivt~~dll~~~--------- 198 (286)
T 2oux_A 133 HYEDETAGAIMTT----EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ-ENHLVGVISLRDLIVND--------- 198 (286)
T ss_dssp TSCTTBHHHHCBS----CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT-TCBEEEEEEHHHHTTSC---------
T ss_pred cCChHHHHHhCCC----CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC-CCeEEEEEEHHHHHcCC---------
Confidence 4567789999987 899999999999999999987 8889999994 79999999999987641
Q ss_pred hhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353 250 ESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLT 318 (426)
Q Consensus 250 ~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~ 318 (426)
...++.+ +|.++ ++++.+++++.++++.|.+++++++||||++| +++|+||..|++..+.
T Consensus 199 ---~~~~v~~----im~~~-~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g-~lvGiIT~~Dil~~i~ 258 (286)
T 2oux_A 199 ---DDTLIAD----ILNER-VISVHVGDDQEDVAQTIRDYDFLAVPVTDYDD-HLLGIVTVDDIIDVID 258 (286)
T ss_dssp ---TTSBHHH----HSBSC-CCCEETTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHH
T ss_pred ---CCCcHHH----HcCCC-CeeecCCCCHHHHHHHHHHcCCcEEEEEcCCC-eEEEEEEHHHHHHHHH
Confidence 1356777 78765 89999999999999999999999999999888 9999999999999864
No 103
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.47 E-value=1.2e-13 Score=141.39 Aligned_cols=127 Identities=16% Similarity=0.231 Sum_probs=109.6
Q ss_pred hccCCccCCCCCCCceEEEeCC-CCHHHHHHHHHHCCcccceeee-cCCCCCcccccceEEEeehHHHHHHHHhhcCCCC
Q 014353 51 FESIPVEAFPPPPSQVIEIKSD-TSLAEAVEILAQHRILSAPVVD-VDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPS 128 (426)
Q Consensus 51 ~~~~~~~~~~~~~~~vi~v~~~-~sl~~A~~~l~~~~i~slPVvd-~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~ 128 (426)
|...+++++ |++++++++++ +|+.+|+++|.++++.++||+| ++ ++++||||..||++++.....
T Consensus 381 l~~~~V~di--M~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~--------g~lvGiVt~~Dll~~l~~~~~--- 447 (527)
T 3pc3_A 381 WWSLAIAEL--ELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDD--------GSVLGVVGQETLITQIVSMNR--- 447 (527)
T ss_dssp TTTSBGGGG--CCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTT--------CCEEEEEEHHHHHHHHHHHCC---
T ss_pred ccCCcHHHh--CcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCC--------CEEEEEEEHHHHHHHHHhccC---
Confidence 556888888 89999999999 9999999999999999999999 56 899999999999988765321
Q ss_pred CCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHH
Q 014353 129 PRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLL 208 (426)
Q Consensus 129 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~ 208 (426)
....++.++|.+ +++++.+++++.+++.+
T Consensus 448 -----------------------------------------------~~~~~V~~im~~----~~~~v~~~~~l~~a~~~ 476 (527)
T 3pc3_A 448 -----------------------------------------------QQSDPAIKALNK----RVIRLNESEILGKLARV 476 (527)
T ss_dssp -----------------------------------------------CTTSBGGGGEET----TCCEEETTSBHHHHHHH
T ss_pred -----------------------------------------------cCCCcHHHHhcC----CCeEECCCCcHHHHHHH
Confidence 124578999987 89999999999999999
Q ss_pred HhhcCCcEeEEEeCC---CCeEEEEEeHHHHHHHHHhc
Q 014353 209 LSKYKMKSIPVVDLG---EGTIDNIITQSSVIHMLAEC 243 (426)
Q Consensus 209 l~~~~~~~ipVvd~~---~~~l~Giis~~Dl~~~l~~~ 243 (426)
|.++++ +||+|.+ .++++||||..|+++++.+.
T Consensus 477 m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~ 512 (527)
T 3pc3_A 477 LEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAG 512 (527)
T ss_dssp HTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTC
T ss_pred HhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhc
Confidence 977664 6999842 38999999999999999755
No 104
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.47 E-value=3.3e-13 Score=126.90 Aligned_cols=122 Identities=22% Similarity=0.371 Sum_probs=106.3
Q ss_pred cccccchhhhccccccCCcEEecCCCCHHHHHHHHhhc-----CCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchh
Q 014353 175 FYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKY-----KMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWF 249 (426)
Q Consensus 175 ~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~-----~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~ 249 (426)
.+...+++++|.+ +++++.++.++.+++..|.++ ++.++||+|. +++++|+||..|++...
T Consensus 131 ~~~~~~v~~iM~~----~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~-~~~lvGivt~~dll~~~--------- 196 (278)
T 2yvy_A 131 RYEEDEAGGLMTP----EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-KGRLKGVLSLRDLIVAD--------- 196 (278)
T ss_dssp HSCTTBGGGTCBS----CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT-TCBEEEEEEHHHHHHSC---------
T ss_pred CCCcchHHhhcCC----CceEECCCCcHHHHHHHHHHccCCccceeEEEEECC-CCCEEEEEEHHHHhcCC---------
Confidence 3556789999987 889999999999999999987 7899999994 79999999999987631
Q ss_pred hhhccccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353 250 ESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA 319 (426)
Q Consensus 250 ~~~~~~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~ 319 (426)
...++.+ +|.++ ++++.+++++.++++.|.+++++.+||||++| +++|+||..|++..+..
T Consensus 197 ---~~~~v~~----im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~lvGivT~~Dil~~i~~ 257 (278)
T 2yvy_A 197 ---PRTRVAE----IMNPK-VVYVRTDTDQEEVARLMADYDFTVLPVVDEEG-RLVGIVTVDDVLDVLEA 257 (278)
T ss_dssp ---TTCBSTT----TSBSS-CCCEETTSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHC--
T ss_pred ---CCCcHHH----HhCCC-CeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCC-eEEEEEEHHHHHHHHHH
Confidence 1356777 88765 99999999999999999999999999999888 99999999999998653
No 105
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.39 E-value=8.3e-13 Score=133.96 Aligned_cols=114 Identities=30% Similarity=0.436 Sum_probs=98.2
Q ss_pred CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeC--CCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHH
Q 014353 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEK--GGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKY 341 (426)
Q Consensus 264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~--~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 341 (426)
.|..+ ++++.+++++.+++++|.+++++++||+|+ ++ +++|+|+.+|+.... . .. .++.++
T Consensus 118 ~m~~d-~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~-~lvGiVt~rDl~~~~--~------~~-------~~V~~v 180 (511)
T 3usb_A 118 GVISD-PFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDER-KLVGIITNRDMRFIQ--D------YS-------IKISDV 180 (511)
T ss_dssp CSSSS-CCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTC-BEEEEEEHHHHTTCC--C------SS-------SBHHHH
T ss_pred ccccC-CEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCC-EEEEEEEehHhhhhc--c------CC-------CcHHHh
Confidence 56664 899999999999999999999999999998 77 999999999996421 0 01 124444
Q ss_pred hhhcCCCCCCCcC-CceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353 342 MEEHHHEDSPLLS-GMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH 404 (426)
Q Consensus 342 ~~~~~~~~~~~~~-~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~ 404 (426)
| .+ +++++++++++.++++.|.+++++.+||||++|+++|+||..||++.+..
T Consensus 181 M----------~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 181 M----------TKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF 234 (511)
T ss_dssp C----------CCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred c----------ccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence 4 33 88999999999999999999999999999999999999999999999865
No 106
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.38 E-value=2e-12 Score=130.28 Aligned_cols=121 Identities=21% Similarity=0.381 Sum_probs=106.2
Q ss_pred hccCCccCCCCCCCceEEEeCCCCHHHHHHHHHHC-----CcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcC
Q 014353 51 FESIPVEAFPPPPSQVIEIKSDTSLAEAVEILAQH-----RILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSE 125 (426)
Q Consensus 51 ~~~~~~~~~~~~~~~vi~v~~~~sl~~A~~~l~~~-----~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~ 125 (426)
|...++.++ |+++++++++++++.+|++.|.++ ++..+||+|++ ++++|+|+..|++.. .
T Consensus 152 ~~~~~v~~i--M~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~--------~~lvGiVt~~Dll~~-----~ 216 (473)
T 2zy9_A 152 YEEDEAGGL--MTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK--------GRLKGVLSLRDLIVA-----D 216 (473)
T ss_dssp SCTTBSTTT--CBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT--------SBEEEEEEHHHHHHS-----C
T ss_pred CCCCCHHHh--CCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC--------CcEEEEEEHHHHhcC-----C
Confidence 345666676 999999999999999999999996 68999999987 899999999999731 0
Q ss_pred CCCCCCCCCchhHHHhhhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHH
Q 014353 126 PPSPRSSSPSSALAAAVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTM 205 (426)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~ 205 (426)
...+++++|.+ +++++.+++++.++
T Consensus 217 ---------------------------------------------------~~~~v~dim~~----~~~~v~~~~~l~ea 241 (473)
T 2zy9_A 217 ---------------------------------------------------PRTRVAEIMNP----KVVYVRTDTDQEEV 241 (473)
T ss_dssp ---------------------------------------------------TTSBGGGTSBS----SCCCEESSSBHHHH
T ss_pred ---------------------------------------------------CCCcHHHHhCC----CCeEEeCCCcHHHH
Confidence 13468899976 88899999999999
Q ss_pred HHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHh
Q 014353 206 LLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAE 242 (426)
Q Consensus 206 l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~ 242 (426)
++.|.+++.+.+||+| ++|+++|+||..|++..+..
T Consensus 242 ~~~m~~~~~~~lpVVD-e~g~lvGiIT~~Dil~~i~~ 277 (473)
T 2zy9_A 242 ARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLEA 277 (473)
T ss_dssp HHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEEEc-CCCEEEEEEehHhhHHHHHH
Confidence 9999999999999999 48999999999999998854
No 107
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.38 E-value=4.5e-12 Score=128.74 Aligned_cols=114 Identities=27% Similarity=0.412 Sum_probs=101.8
Q ss_pred CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEe--CCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHH
Q 014353 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVE--KGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKY 341 (426)
Q Consensus 264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd--~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 341 (426)
+|.++ ++++.+++++.++++.|.+++++++||+| +++ +++|+||.+|++....
T Consensus 95 im~~~-~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~-~lvGivt~~Dl~~~~~----------------------- 149 (491)
T 1zfj_A 95 GVIID-PFFLTPEHKVSEAEELMQRYRISGVPIVETLANR-KLVGIITNRDMRFISD----------------------- 149 (491)
T ss_dssp TTSSS-CCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTC-BEEEEEEHHHHHHCSC-----------------------
T ss_pred cCcCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCC-EEEEEEEHHHHhhhcc-----------------------
Confidence 78875 99999999999999999999999999999 666 9999999999986411
Q ss_pred hhhcCCCCCCCcC-CceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Q 014353 342 MEEHHHEDSPLLS-GMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVH 404 (426)
Q Consensus 342 ~~~~~~~~~~~~~-~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~ 404 (426)
...++.++|.+ +++++++++++.++++.|.+++++++||||++|+++|+||.+||++.+..
T Consensus 150 --~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 150 --YNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF 211 (491)
T ss_dssp --SSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred --CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence 01256677877 89999999999999999999999999999999999999999999999874
No 108
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.36 E-value=4.9e-12 Score=128.31 Aligned_cols=154 Identities=19% Similarity=0.270 Sum_probs=117.8
Q ss_pred CcEEecCCCCHHHHHHHHhhcCCcEeEEEeCC--CCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccccCCcccCC
Q 014353 192 PFLALQKSNSFLTMLLLLSKYKMKSIPVVDLG--EGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANH 269 (426)
Q Consensus 192 ~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~--~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~~~im~~~~ 269 (426)
+++++.+++++.+++.+|.+++++++||+| + +++++|+||..|+.. .. ....++.+ +|++++
T Consensus 122 d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd-~g~~~~lvGiVt~rDl~~----~~-------~~~~~V~~----vM~~~~ 185 (511)
T 3usb_A 122 DPFFLTPEHQVYDAEHLMGKYRISGVPVVN-NLDERKLVGIITNRDMRF----IQ-------DYSIKISD----VMTKEQ 185 (511)
T ss_dssp SCCCBCTTSBHHHHHHHHHHHCCSEEEEES-CTTTCBEEEEEEHHHHTT----CC-------CSSSBHHH----HCCCCC
T ss_pred CCEEECCCCCHHHHHHHHHHcCCcEEEEEe-cCCCCEEEEEEEehHhhh----hc-------cCCCcHHH----hcccCC
Confidence 677899999999999999999999999999 4 689999999999853 11 11457777 788645
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcCCCC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHED 349 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (426)
++++++++++.+++++|.+++++.+||||++| +++|+||.+|+++.+..+....
T Consensus 186 ~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g-~l~GiIT~~Dil~~~~~p~a~~------------------------- 239 (511)
T 3usb_A 186 LITAPVGTTLSEAEKILQKYKIEKLPLVDNNG-VLQGLITIKDIEKVIEFPNSAK------------------------- 239 (511)
T ss_dssp CCCEETTCCHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHHCTTCCB-------------------------
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEEeCCC-CEeeeccHHHHHHhhhcccchh-------------------------
Confidence 99999999999999999999999999999998 9999999999999976532111
Q ss_pred CCCcCC--ceeecCCCCHHHHHHHHHhCCCcEEEEEcCCC
Q 014353 350 SPLLSG--MVTCSRNHTIKELIHLLDSKKIHRIYVVDFNG 387 (426)
Q Consensus 350 ~~~~~~--~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~ 387 (426)
+.+.+. ...+.......+.++.+.+.+++.++|-..++
T Consensus 240 D~~~rl~V~aavg~~~d~~era~aLveaGvd~I~Id~a~g 279 (511)
T 3usb_A 240 DKQGRLLVGAAVGVTADAMTRIDALVKASVDAIVLDTAHG 279 (511)
T ss_dssp CTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEECSCT
T ss_pred hhccceeeeeeeeeccchHHHHHHHHhhccceEEeccccc
Confidence 111111 12333344445566677777887776654443
No 109
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.33 E-value=5.5e-13 Score=134.80 Aligned_cols=113 Identities=21% Similarity=0.309 Sum_probs=84.1
Q ss_pred CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME 343 (426)
Q Consensus 264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 343 (426)
+|..+ ++++.+++++.+++++|.+++++++||+|+++ +++|+||.+|+.... ..
T Consensus 94 ~m~~d-~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~-~lvGiVt~rDL~~~~-~~----------------------- 147 (496)
T 4fxs_A 94 GVVTH-PVTVRPEQTIADVMELTHYHGFAGFPVVTENN-ELVGIITGRDVRFVT-DL----------------------- 147 (496)
T ss_dssp --CBC-CCCBCSSSBHHHHHHHHTSSCCCEEEEECSSS-BEEEEEEHHHHTTCC-CT-----------------------
T ss_pred ccccC-ceEECCCCCHHHHHHHHHHcCCcEEEEEccCC-EEEEEEEHHHHhhcc-cC-----------------------
Confidence 67764 99999999999999999999999999999877 999999999996321 00
Q ss_pred hcCCCCCCCc-C-CceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353 344 EHHHEDSPLL-S-GMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV 403 (426)
Q Consensus 344 ~~~~~~~~~~-~-~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~ 403 (426)
..++.++|. . +++++++++++.++++.|.+++++.+||||++|+++|+||++||++...
T Consensus 148 -~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~ 208 (496)
T 4fxs_A 148 -TKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAES 208 (496)
T ss_dssp -TSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CC
T ss_pred -CCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhc
Confidence 013344555 2 5899999999999999999999999999999999999999999999864
No 110
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.31 E-value=9.2e-13 Score=137.55 Aligned_cols=130 Identities=18% Similarity=0.095 Sum_probs=103.5
Q ss_pred cccchhhhcc--ccccCCcEEecCCCCHHHHHHHHh-hcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcch-----
Q 014353 177 KNTKVRDIAG--SFRWAPFLALQKSNSFLTMLLLLS-KYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEW----- 248 (426)
Q Consensus 177 ~~~~v~~i~~--~~~~~~~~~v~~~~~l~~~l~~l~-~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~----- 248 (426)
...+++++|. + ++.++.+++++.|+.+.|. +++++++||+|+ +++++|+|+.+|+.+.+........
T Consensus 451 ~~~~V~diM~p~~----~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~-~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~ 525 (632)
T 3org_A 451 PEMTAREIMHPIE----GEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA-NGYLLGAISRKEIVDRLQHVLEDVPEPIAG 525 (632)
T ss_dssp TTSBHHHHCBCTT----TSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT-TCBBCCEESHHHHTTTTTTC----------
T ss_pred ccCcHHHHhhcCC----CceEecCCCcHHHHHHHHHhcCCcceEEEEec-CCeEEEEEEHHHHHHHHHHHhhhccccccc
Confidence 5678999998 5 7889999999999999999 799999999994 8999999999999887643210000
Q ss_pred ---------------hhhhcc---------------------ccccccccCCcccCCeeEeCCCCcHHHHHHHHHhcCCC
Q 014353 249 ---------------FESWGK---------------------KKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIG 292 (426)
Q Consensus 249 ---------------~~~~~~---------------------~~v~~~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~ 292 (426)
...... .++.+ +|+++ ++++++++++.+++++|.+++++
T Consensus 526 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~----iMt~~-pitV~~~~~l~ea~~~M~~~~i~ 600 (632)
T 3org_A 526 HRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVV----PCDVS-PIVVTSYSLVRQLHFLFVMLMPS 600 (632)
T ss_dssp ---------------------------------------------CC----SCCCC-CCEEETTCBHHHHHHHHHHTCCS
T ss_pred ccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccch----hhcCC-CceecCCCcHHHHHHHHHhcCCC
Confidence 000000 01333 78876 89999999999999999999999
Q ss_pred eeEEEeCCCCeEEEEEeHHHHHHHhh
Q 014353 293 GIPVVEKGGNKAVGNISLRDIQFLLT 318 (426)
Q Consensus 293 ~lpVvd~~~~~lvGiIs~~Dl~~~~~ 318 (426)
.+||+ ++| +++|+||++|+++.+.
T Consensus 601 ~lpVv-e~G-~lvGIVT~~Dll~~~~ 624 (632)
T 3org_A 601 MIYVT-ERG-KLVGIVEREDVAYGYS 624 (632)
T ss_dssp EEEEE-ETT-EEEEEEEGGGTEECCC
T ss_pred EEEEE-ECC-EEEEEEehhhHHHHHh
Confidence 99999 567 9999999999987754
No 111
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.30 E-value=2.5e-13 Score=137.93 Aligned_cols=116 Identities=17% Similarity=0.236 Sum_probs=0.9
Q ss_pred cccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCC---CCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHH
Q 014353 265 MSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKG---GNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKY 341 (426)
Q Consensus 265 m~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~---~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 341 (426)
|.++ ++++.+++++.+++++|.+++++++||+|++ + +++|+||.+|+++. .. +...+++++
T Consensus 103 M~~~-~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g-~lvGiVt~~Dl~~~--~~------------~~~~~V~di 166 (503)
T 1me8_A 103 FVVS-DSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHG-VLLGLVTQRDYPID--LT------------QTETKVSDM 166 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccC-CeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCC-eEEEEEEHHHHHhh--hc------------cccCcHHHH
Confidence 7774 9999999999999999999999999999986 6 99999999999864 00 122334444
Q ss_pred hhhcCCCCCCCcCC--ceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q 014353 342 MEEHHHEDSPLLSG--MVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEP 406 (426)
Q Consensus 342 ~~~~~~~~~~~~~~--~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~ 406 (426)
|.++ ++++++++++.+++++|.+++++.+||||++|+++|+||.+||++.+....
T Consensus 167 ----------M~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~~ 223 (503)
T 1me8_A 167 ----------MTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHN 223 (503)
T ss_dssp -----------------------------------------------------------------CC
T ss_pred ----------hCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhccc
Confidence 4445 999999999999999999999999999999999999999999999987543
No 112
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.26 E-value=5.1e-13 Score=132.19 Aligned_cols=107 Identities=23% Similarity=0.345 Sum_probs=0.0
Q ss_pred eeEeCCCCcHHHHHHHHHhcCCCeeEEEeC---CCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhhhcC
Q 014353 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEK---GGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHH 346 (426)
Q Consensus 270 ~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~---~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 346 (426)
++++.++.++.+++++|.+++++.+||+|+ ++ +++||||.+|+... +...+++++
T Consensus 148 Pvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~-kLvGIvT~RD~rf~----------------d~~~~V~ev----- 205 (556)
T 4af0_A 148 PLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDS-KLLGIVTGRDVQFQ----------------DAETPIKSV----- 205 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeEcCCCCCHHHHHHHHHHhCCCccccccccCcCC-EEEEEEeccccccc----------------ccceEhhhh-----
Confidence 899999999999999999999999999987 45 99999999998542 122345544
Q ss_pred CCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353 347 HEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV 403 (426)
Q Consensus 347 ~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~ 403 (426)
|++++++++...++++|.++|.++++..+||||++|+++|+||.+|+++.-.
T Consensus 206 -----MT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~ 257 (556)
T 4af0_A 206 -----MTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQN 257 (556)
T ss_dssp ---------------------------------------------------------
T ss_pred -----cccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhh
Confidence 4458999999999999999999999999999999999999999999998764
No 113
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.25 E-value=5.3e-13 Score=134.84 Aligned_cols=112 Identities=27% Similarity=0.382 Sum_probs=0.0
Q ss_pred CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME 343 (426)
Q Consensus 264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 343 (426)
+|..+ ++++.+++++.+++++|.+++++++||+| ++ +++|+||.+|+.... +...++.+
T Consensus 93 ~m~~~-~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g-~lvGIVt~rDl~~~~---------------~~~~~V~~--- 151 (490)
T 4avf_A 93 AIVRD-PVTVTPSTKIIELLQMAREYGFSGFPVVE-QG-ELVGIVTGRDLRVKP---------------NAGDTVAA--- 151 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccC-ceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CC-EEEEEEEhHHhhhcc---------------ccCCcHHH---
Confidence 67765 89999999999999999999999999999 66 999999999995331 12233444
Q ss_pred hcCCCCCCCc-C-CceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353 344 EHHHEDSPLL-S-GMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV 403 (426)
Q Consensus 344 ~~~~~~~~~~-~-~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~ 403 (426)
+|. + +++++++++++.+++++|.+++++.+||||++|+++|+||++||++...
T Consensus 152 -------vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~ 206 (490)
T 4avf_A 152 -------IMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT 206 (490)
T ss_dssp --------------------------------------------------------------
T ss_pred -------HhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence 444 2 6899999999999999999999999999999999999999999999864
No 114
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.25 E-value=6e-13 Score=135.25 Aligned_cols=115 Identities=27% Similarity=0.468 Sum_probs=6.5
Q ss_pred CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME 343 (426)
Q Consensus 264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 343 (426)
+|.++ ++++.+++++.++++.|.+++++.+||+|+++ +++|+||.+|+.+.. +...
T Consensus 100 iM~~~-~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-~lvGivt~~Dl~~~~---------------~~~~------- 155 (494)
T 1vrd_A 100 GIIYD-PITVTPDMTVKEAIDLMAEYKIGGLPVVDEEG-RLVGLLTNRDVRFEK---------------NLSK------- 155 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCccC-CeEECCCCCHHHHHHHHHHcCceEEEEEcCCC-EEEEEEEHHHHHhhc---------------CCCC-------
Confidence 78764 99999999999999999999999999999887 999999999998631 1112
Q ss_pred hcCCCCCCCcC--CceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 344 EHHHEDSPLLS--GMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 344 ~~~~~~~~~~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
++.++|.+ ++.++++++++.+++++|.+++++++||||++|+++|+||.+||++.+...
T Consensus 156 ---~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~ 216 (494)
T 1vrd_A 156 ---KIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHP 216 (494)
T ss_dssp --------------------------------------------------------CHHHHTCT
T ss_pred ---cHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhccc
Confidence 33345555 889999999999999999999999999999999999999999999998754
No 115
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.23 E-value=1.9e-12 Score=131.40 Aligned_cols=115 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred ccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCC---CeEEEEEeHHHHHHHHHhccCcchhhhhccccccccc
Q 014353 185 AGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGE---GTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIG 261 (426)
Q Consensus 185 ~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~---~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~ 261 (426)
|.+ +++++.+++++.+++..|.+++++++||+|. + ++++|+||..|+... . . ....++.+
T Consensus 103 M~~----~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~-~~~~g~lvGiVt~~Dl~~~-~-~--------~~~~~V~d-- 165 (503)
T 1me8_A 103 FVV----SDSNVKPDQTFADVLAISQRTTHNTVAVTDD-GTPHGVLLGLVTQRDYPID-L-T--------QTETKVSD-- 165 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccc----CCeEECCCCcHHHHHHHHHHcCceEEEEEEC-CCcCCeEEEEEEHHHHHhh-h-c--------cccCcHHH--
Confidence 665 7889999999999999999999999999994 5 899999999998764 1 0 11356777
Q ss_pred cCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353 262 LPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA 319 (426)
Q Consensus 262 ~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~ 319 (426)
+|++ ++++++.+++++.+++++|.+++++.+||+|++| +++|+||.+||++.+..
T Consensus 166 --iM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g-~lvGiIT~~Dil~~~~~ 221 (503)
T 1me8_A 166 --MMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQ-HLRYIVFRKDYDRSQVC 221 (503)
T ss_dssp -----------------------------------------------------------
T ss_pred --HhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEecHHHHhhhc
Confidence 7875 2389999999999999999999999999999988 99999999999988653
No 116
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.16 E-value=3.1e-11 Score=122.03 Aligned_cols=118 Identities=16% Similarity=0.163 Sum_probs=88.4
Q ss_pred hhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhcccccccc
Q 014353 181 VRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEI 260 (426)
Q Consensus 181 v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~ 260 (426)
+.++|.. +++++.+++++.+++.+|.+++++++||+|. +++++|+||..|+... . -...++.+
T Consensus 91 ~~~~m~~----d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~-~~~lvGiVt~rDL~~~---~--------~~~~~v~d- 153 (496)
T 4fxs_A 91 FEAGVVT----HPVTVRPEQTIADVMELTHYHGFAGFPVVTE-NNELVGIITGRDVRFV---T--------DLTKSVAA- 153 (496)
T ss_dssp CCC--CB----CCCCBCSSSBHHHHHHHHTSSCCCEEEEECS-SSBEEEEEEHHHHTTC---C--------CTTSBGGG-
T ss_pred ccccccc----CceEECCCCCHHHHHHHHHHcCCcEEEEEcc-CCEEEEEEEHHHHhhc---c--------cCCCcHHH-
Confidence 4556665 7889999999999999999999999999994 7999999999998511 0 12456777
Q ss_pred ccCCcc-cCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353 261 GLPIMS-ANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA 319 (426)
Q Consensus 261 ~~~im~-~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~ 319 (426)
+|+ .++++++.+++++.+++++|.+++++.+||||++| +++|+||.+|+++....
T Consensus 154 ---iM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G-~l~GiIT~~DIl~~~~~ 209 (496)
T 4fxs_A 154 ---VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEF-QLKGMITAKDFHKAESK 209 (496)
T ss_dssp ---TSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTS-BCCEEECCC-----CCC
T ss_pred ---HhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-CEEEeehHhHHHHhhcc
Confidence 888 33489999999999999999999999999999998 99999999999988543
No 117
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.12 E-value=2.5e-10 Score=115.94 Aligned_cols=119 Identities=18% Similarity=0.328 Sum_probs=103.2
Q ss_pred hhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeC-CCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccc
Q 014353 181 VRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDL-GEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSE 259 (426)
Q Consensus 181 v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~-~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~ 259 (426)
+.++|.. ++.++.+++++.+++..|.+++++++||+|. ++++++|+||..|++... . ...++.+
T Consensus 92 ~~~im~~----~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~----~-------~~~~v~~ 156 (491)
T 1zfj_A 92 SENGVII----DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS----D-------YNAPISE 156 (491)
T ss_dssp HTTTTSS----SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS----C-------SSSBTTT
T ss_pred HHhcCcC----CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc----c-------CCCcHHH
Confidence 4678876 7888999999999999999999999999982 378999999999987531 0 1456777
Q ss_pred cccCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353 260 IGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA 319 (426)
Q Consensus 260 ~~~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~ 319 (426)
+|++++++++.+++++.++++.|.+++++.+||||+++ +++|+||..||++.+..
T Consensus 157 ----im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g-~lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 157 ----HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSG-RLSGLITIKDIEKVIEF 211 (491)
T ss_dssp ----SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTS-BEEEEEEHHHHHHHHHC
T ss_pred ----HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEEHHHHHHHHhc
Confidence 88862489999999999999999999999999999988 99999999999999874
No 118
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=99.11 E-value=1e-10 Score=85.45 Aligned_cols=48 Identities=21% Similarity=0.332 Sum_probs=44.1
Q ss_pred ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHH
Q 014353 65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWIL 121 (426)
Q Consensus 65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~ 121 (426)
++++++|++|+.+|+++|.++++.++||+|+ ++++||||.+||++.+.
T Consensus 1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~---------~~lvGIvT~~Di~~~~~ 48 (70)
T 3ghd_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG---------DEILGVVTERDILDKVV 48 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEET---------TEEEEEEEHHHHHHHTT
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC---------CEEEEEEEHHHHHHHHH
Confidence 4789999999999999999999999999985 79999999999987644
No 119
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.09 E-value=3.9e-11 Score=121.16 Aligned_cols=118 Identities=19% Similarity=0.273 Sum_probs=2.5
Q ss_pred chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccc
Q 014353 180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSE 259 (426)
Q Consensus 180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~ 259 (426)
++.++|.. +++++.+++++.+++.+|.+++++++||+| +++++|+||..|+.... ....++.+
T Consensus 89 ~~~~~m~~----~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd--~g~lvGIVt~rDl~~~~-----------~~~~~V~~ 151 (490)
T 4avf_A 89 KHETAIVR----DPVTVTPSTKIIELLQMAREYGFSGFPVVE--QGELVGIVTGRDLRVKP-----------NAGDTVAA 151 (490)
T ss_dssp HCCC----------------------------------------------------------------------------
T ss_pred ccccCccc----CceEeCCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEhHHhhhcc-----------ccCCcHHH
Confidence 35566765 778999999999999999999999999999 68999999999984221 11356777
Q ss_pred cccCCcc-cCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014353 260 IGLPIMS-ANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTA 319 (426)
Q Consensus 260 ~~~~im~-~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~ 319 (426)
+|+ .++++++.+++++.+++++|.+++++.+||||++| +++|+||.+|+++....
T Consensus 152 ----vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g-~lvGiIT~~Dil~~~~~ 207 (490)
T 4avf_A 152 ----IMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENF-YLRGLVTFRDIEKAKTY 207 (490)
T ss_dssp ------------------------------------------------------------C
T ss_pred ----HhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEehHHhhhhccC
Confidence 888 33499999999999999999999999999999988 99999999999998644
No 120
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.09 E-value=9.9e-12 Score=123.06 Aligned_cols=113 Identities=16% Similarity=0.324 Sum_probs=0.0
Q ss_pred CCCceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHHhhcCCCCCCCCCCchhHHHh
Q 014353 62 PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQSEPPSPRSSSPSSALAAA 141 (426)
Q Consensus 62 ~~~~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~~~~~~~~~~~~~~~~~~~~~ 141 (426)
+-.+++++.|+.||.||+++|.++++..+||+|..+.. ++++||||.+|+-. .
T Consensus 144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~-----~kLvGIvT~RD~rf---~------------------- 196 (556)
T 4af0_A 144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPD-----SKLLGIVTGRDVQF---Q------------------- 196 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcC-----CEEEEEEecccccc---c-------------------
Confidence 45678999999999999999999999999999974211 89999999999831 1
Q ss_pred hhcCccccccccCCCCcccccccchhhcccccccccccchhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEe
Q 014353 142 VNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVD 221 (426)
Q Consensus 142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd 221 (426)
....++.++|.+ +++++.+..++.++..+|.++++..+||+|
T Consensus 197 ----------------------------------d~~~~V~evMT~----~lvt~~~~~~leeA~~iL~~~kieklpVVd 238 (556)
T 4af0_A 197 ----------------------------------DAETPIKSVMTT----EVVTGSSPITLEKANSLLRETKKGKLPIVD 238 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------ccceEhhhhccc----ceEEecCCCCHHHHHHHHHHccccceeEEc
Confidence 113478899997 899999999999999999999999999999
Q ss_pred CCCCeEEEEEeHHHHHHHH
Q 014353 222 LGEGTIDNIITQSSVIHML 240 (426)
Q Consensus 222 ~~~~~l~Giis~~Dl~~~l 240 (426)
++++|+|+||.+|+.+.-
T Consensus 239 -~~g~LvGlIT~kDi~k~~ 256 (556)
T 4af0_A 239 -SNGHLVSLVARSDLLKNQ 256 (556)
T ss_dssp -------------------
T ss_pred -cCCcEEEEEEechhhhhh
Confidence 589999999999987765
No 121
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.09 E-value=5.3e-11 Score=120.88 Aligned_cols=120 Identities=23% Similarity=0.389 Sum_probs=7.0
Q ss_pred chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccc
Q 014353 180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSE 259 (426)
Q Consensus 180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~ 259 (426)
.+.++|.+ ++.++.+++++.+++..|.+++++.+||+| ++++++|+||..|+...-. ...++.+
T Consensus 96 ~~~~iM~~----~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd-~~~~lvGivt~~Dl~~~~~-----------~~~~v~~ 159 (494)
T 1vrd_A 96 KTENGIIY----DPITVTPDMTVKEAIDLMAEYKIGGLPVVD-EEGRLVGLLTNRDVRFEKN-----------LSKKIKD 159 (494)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred hHhhcCcc----CCeEECCCCCHHHHHHHHHHcCceEEEEEc-CCCEEEEEEEHHHHHhhcC-----------CCCcHHH
Confidence 35667776 788999999999999999999999999999 4789999999999875210 1356777
Q ss_pred cccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCC
Q 014353 260 IGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAP 320 (426)
Q Consensus 260 ~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~ 320 (426)
+|++ ++++++.+++++.+++++|.+++++.+||||+++ +++|+||..|+++.+...
T Consensus 160 ----im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g-~lvGiIt~~Dll~~~~~~ 216 (494)
T 1vrd_A 160 ----LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDN-KLVGLITIKDIMSVIEHP 216 (494)
T ss_dssp ------------------------------------------------------CHHHHTCT
T ss_pred ----HhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCC-eEEEEEEHHHHHhhhccc
Confidence 8886 2399999999999999999999999999999988 999999999999997644
No 122
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=99.08 E-value=2.6e-12 Score=131.06 Aligned_cols=115 Identities=24% Similarity=0.311 Sum_probs=67.9
Q ss_pred CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeC---CCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHH
Q 014353 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEK---GGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRK 340 (426)
Q Consensus 264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~---~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~ 340 (426)
+|.++ ++++.+++++.+++++|.+++++.+||+|+ ++ +++|+||.+|+..... .....
T Consensus 113 im~~~-~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~-~lvGiVt~~Dl~~~~~-------------~~~~~---- 173 (514)
T 1jcn_A 113 GFITD-PVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGS-KLVGIVTSRDIDFLAE-------------KDHTT---- 173 (514)
T ss_dssp TSCSS-CCCCCC-----------------CEESCC---------CCEECTTTTC--------------------------
T ss_pred ccccC-CEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCC-EEEEEEEHHHHHhhhh-------------ccCCC----
Confidence 77765 889999999999999999999999999998 46 9999999999865410 01112
Q ss_pred HhhhcCCCCCCCcC--CceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353 341 YMEEHHHEDSPLLS--GMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV 403 (426)
Q Consensus 341 ~~~~~~~~~~~~~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~ 403 (426)
++.++|.+ ++.++++++++.++++.|.+++++++||||++|+++|+||++||++.+.
T Consensus 174 ------~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~ 232 (514)
T 1jcn_A 174 ------LLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRD 232 (514)
T ss_dssp -------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCC
T ss_pred ------CHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhh
Confidence 34455565 8999999999999999999999999999999999999999999998764
No 123
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=99.06 E-value=1.6e-11 Score=124.26 Aligned_cols=110 Identities=30% Similarity=0.489 Sum_probs=0.5
Q ss_pred CcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHHhh
Q 014353 264 IMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME 343 (426)
Q Consensus 264 im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 343 (426)
.|..+ ++++.+++++.++++.|.+++++++||+|+ + +++|+|+.+|++. .. ..++.
T Consensus 98 ~m~~~-~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~-~lvGivt~~Dl~~---~~--------------~~~v~---- 153 (486)
T 2cu0_A 98 LIVED-VITIAPDETVDFALFLMEKHGIDGLPVVED-E-KVVGIITKKDIAA---RE--------------GKLVK---- 153 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccC-ceEECCCCCHHHHHHHHHHcCCcEEEEEEC-C-EEEEEEEHHHhcc---CC--------------CCCHH----
Confidence 56654 899999999999999999999999999998 6 9999999999975 11 12333
Q ss_pred hcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Q 014353 344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLV 403 (426)
Q Consensus 344 ~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~ 403 (426)
++|.+++.++++++++.++++.|.+++++.+||||++|+++|+||.+||++.+.
T Consensus 154 ------~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~ 207 (486)
T 2cu0_A 154 ------ELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK 207 (486)
T ss_dssp -----------------------------------------------------------C
T ss_pred ------HHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence 344448899999999999999999999999999999999999999999999864
No 124
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=98.95 E-value=1.8e-10 Score=116.59 Aligned_cols=163 Identities=22% Similarity=0.298 Sum_probs=23.0
Q ss_pred hhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCCCCeEEEEEeHHHHHHHHHhccCcchhhhhccccccccc
Q 014353 182 RDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIG 261 (426)
Q Consensus 182 ~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v~~~~ 261 (426)
.++|.. ++.++.+++++.+++..|.+++++++||+| + ++++|+++..|++. . ...++.+
T Consensus 96 ~~~m~~----~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd-~-~~lvGivt~~Dl~~---~----------~~~~v~~-- 154 (486)
T 2cu0_A 96 ERLIVE----DVITIAPDETVDFALFLMEKHGIDGLPVVE-D-EKVVGIITKKDIAA---R----------EGKLVKE-- 154 (486)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred hhcccc----CceEECCCCCHHHHHHHHHHcCCcEEEEEE-C-CEEEEEEEHHHhcc---C----------CCCCHHH--
Confidence 345654 778899999999999999999999999999 3 89999999999875 1 1356777
Q ss_pred cCCcccCCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCCccccccccccHHHHHHHHHHH
Q 014353 262 LPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKY 341 (426)
Q Consensus 262 ~~im~~~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 341 (426)
+|+++ ++++.+++++.++++.|.+++++.+||+|+++ +++|+||.+||++..........
T Consensus 155 --im~~~-~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g-~lvGiiT~~Dil~~~~~~~~~~~---------------- 214 (486)
T 2cu0_A 155 --LMTKE-VITVPESIEVEEALKIMIENRIDRLPVVDERG-KLVGLITMSDLVARKKYKNAVRD---------------- 214 (486)
T ss_dssp --------------------------------------------------------CCTTCCBC----------------
T ss_pred --HccCC-CeEECCcCcHHHHHHHHHHcCCCEEEEEecCC-eEEEEEEHHHHHHhhhccccccc----------------
Confidence 78764 89999999999999999999999999999988 99999999999988542210000
Q ss_pred hhhcCCCCCCCcCCceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEe
Q 014353 342 MEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVIT 394 (426)
Q Consensus 342 ~~~~~~~~~~~~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT 394 (426)
..+..+.. ..+...+ .+.+..|.+.+++.++|-...|+..++++
T Consensus 215 -----~~g~~~v~--~~~~~~~--~~~a~~l~~~gvd~lvvdta~G~~~~~L~ 258 (486)
T 2cu0_A 215 -----ENGELLVA--AAVSPFD--IKRAIELDKAGVDVIVVDTAHAHNLKAIK 258 (486)
T ss_dssp -----TTSCBCCE--EEECTTC--HHHHHHHHHTTCSEEEEECSCCCCHHHHH
T ss_pred -----cCCceeec--ceechhh--HHHHHHHHHhcCCceEEEecCCcEeehhh
Confidence 00111111 1223333 56677888999988644333455544443
No 125
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=98.90 E-value=7.4e-11 Score=120.36 Aligned_cols=123 Identities=19% Similarity=0.223 Sum_probs=69.9
Q ss_pred chhhhccccccCCcEEecCCCCHHHHHHHHhhcCCcEeEEEeCC--CCeEEEEEeHHHHHHHHHhccCcchhhhhccccc
Q 014353 180 KVRDIAGSFRWAPFLALQKSNSFLTMLLLLSKYKMKSIPVVDLG--EGTIDNIITQSSVIHMLAECAGLEWFESWGKKKL 257 (426)
Q Consensus 180 ~v~~i~~~~~~~~~~~v~~~~~l~~~l~~l~~~~~~~ipVvd~~--~~~l~Giis~~Dl~~~l~~~~~~~~~~~~~~~~v 257 (426)
++.++|.. +++++.+++++.+++..|.+++++.+||+|.+ +++++|+||..|+..... .....++
T Consensus 109 ~~~~im~~----~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~---------~~~~~~v 175 (514)
T 1jcn_A 109 NFEQGFIT----DPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE---------KDHTTLL 175 (514)
T ss_dssp TCCTTSCS----SCCCCCC-----------------CEESCC--------CCEECTTTTC--------------------
T ss_pred hhhhcccc----CCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh---------ccCCCCH
Confidence 45677765 67789999999999999999999999999942 489999999999865321 0123567
Q ss_pred cccccCCccc-CCeeEeCCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhhCC
Q 014353 258 SEIGLPIMSA-NHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAP 320 (426)
Q Consensus 258 ~~~~~~im~~-~~~~~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~ 320 (426)
.+ +|++ ++++++.+++++.+++++|.+++++.+||||++| +++|+||++|+++.+...
T Consensus 176 ~~----vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g-~lvGiIt~~Dll~~~~~~ 234 (514)
T 1jcn_A 176 SE----VMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCD-ELVAIIARTDLKKNRDYP 234 (514)
T ss_dssp ---------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSS-CCC----CCCCSSCCCCT
T ss_pred HH----HhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCC-eEEEEEEHHHHHHHhhCc
Confidence 77 7876 1389999999999999999999999999999988 999999999998876543
No 126
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.79 E-value=1.9e-08 Score=73.32 Aligned_cols=52 Identities=21% Similarity=0.404 Sum_probs=47.2
Q ss_pred ceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhCCCC
Q 014353 356 MVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPG 408 (426)
Q Consensus 356 ~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~~~~ 408 (426)
++++++++|+.+|+++|.+++++++||+| +|+++|+||.+||++.+..+...
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~~ 53 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGKN 53 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTCC
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCCC
Confidence 57999999999999999999999999998 58999999999999988765443
No 127
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.70 E-value=2.6e-08 Score=72.30 Aligned_cols=48 Identities=21% Similarity=0.332 Sum_probs=44.1
Q ss_pred ceEEEeCCCCHHHHHHHHHHCCcccceeeecCCCCCcccccceEEEeehHHHHHHHH
Q 014353 65 QVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWIL 121 (426)
Q Consensus 65 ~vi~v~~~~sl~~A~~~l~~~~i~slPVvd~~~~~~~~~~~~~vGivt~~di~~~l~ 121 (426)
+++++++++++.+|++.|.++++.++||+|+ ++++|+||..||++++.
T Consensus 1 ~~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~---------~~l~Givt~~dl~~~~~ 48 (70)
T 3fio_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG---------DEILGVVTERDILDKVV 48 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEET---------TEEEEEEEHHHHHHHTT
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC---------CEEEEEEEHHHHHHHHH
Confidence 4689999999999999999999999999996 69999999999987654
No 128
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.60 E-value=1.4e-07 Score=68.27 Aligned_cols=50 Identities=22% Similarity=0.388 Sum_probs=46.5
Q ss_pred CceeecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 355 GMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 355 ~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
++.++.+++++.++++.|.+++++++||+|+ |+++|+||.+||++.+...
T Consensus 1 ~~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~-~~l~Givt~~dl~~~~~~~ 50 (70)
T 3fio_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKVVAK 50 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTTTT
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHc
Confidence 3578999999999999999999999999997 9999999999999998765
No 129
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=50.62 E-value=31 Score=24.73 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q 014353 377 IHRIYVVDFNGNLEGVITLRDIISRLVHE 405 (426)
Q Consensus 377 ~~~l~Vvd~~~~liGvIT~~Dll~~l~~~ 405 (426)
...+-+++++|..+|+++..+-++..-..
T Consensus 13 ~~eVrli~~~Ge~lGv~~~~eAl~~A~e~ 41 (78)
T 1tif_A 13 AREVRLIDQNGDQLGIKSKQEALEIAARR 41 (78)
T ss_dssp CSEEEEECTTSCEEEEEEHHHHHHHHHHT
T ss_pred CCEEEEECCCCcCCCcccHHHHHHHHHHc
Confidence 45677999999999999999999887654
No 130
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=30.55 E-value=68 Score=22.93 Aligned_cols=30 Identities=10% Similarity=0.214 Sum_probs=24.3
Q ss_pred CCeeEEEeCCCCeEEEEEeHHHHHHHhhCCc
Q 014353 291 IGGIPVVEKGGNKAVGNISLRDIQFLLTAPE 321 (426)
Q Consensus 291 ~~~lpVvd~~~~~lvGiIs~~Dl~~~~~~~~ 321 (426)
...+=++|++| +.+|+++.++.++.....+
T Consensus 13 ~~eVrli~~~G-e~lGv~~~~eAl~~A~e~~ 42 (78)
T 1tif_A 13 AREVRLIDQNG-DQLGIKSKQEALEIAARRN 42 (78)
T ss_dssp CSEEEEECTTS-CEEEEEEHHHHHHHHHHTT
T ss_pred CCEEEEECCCC-cCCCcccHHHHHHHHHHcC
Confidence 34577899998 9999999999999875543
No 131
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=21.93 E-value=29 Score=28.43 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 014353 365 IKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400 (426)
Q Consensus 365 l~~~~~~m~~~~~~~l~Vvd~~~~liGvIT~~Dll~ 400 (426)
+.+.++.+...+..-++|.. +|+++|+|...|.+|
T Consensus 121 ~~~~~~~la~~G~T~v~VA~-d~~l~GvIalaD~iK 155 (156)
T 1svj_A 121 VDQKVDQVARQGATPLVVVE-GSRVLGVIALKDIVK 155 (156)
T ss_dssp HHHHHHHHHHTTCEEEEEEE-TTEEEEEEEEEECCC
T ss_pred HHHHHHHHHhCCCCEEEEEE-CCEEEEEEEEecCCC
Confidence 77888888899988888886 599999999887553
No 132
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=21.82 E-value=62 Score=25.10 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=18.1
Q ss_pred cHHHHHHHHH-hcCCCeeEEEeCCCCeEE
Q 014353 278 PVLQAFKLMR-RKKIGGIPVVEKGGNKAV 305 (426)
Q Consensus 278 ~v~~a~~~m~-~~~~~~lpVvd~~~~~lv 305 (426)
.+...++.+. ..+...+.|+|.+| ..+
T Consensus 36 ~l~~~~~~~~~~~~~~~i~v~d~~G-~~~ 63 (131)
T 1p0z_A 36 RIKALIDPMRSFSDATYITVGDASG-QRL 63 (131)
T ss_dssp HHHHHHHHHHHHSCCSEEEEEETTS-BEE
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCC-cEE
Confidence 4555555544 46788899999887 543
No 133
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=21.50 E-value=62 Score=25.60 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=18.3
Q ss_pred CcHHHHHHHHH-hcCCCeeEEEeCCC
Q 014353 277 EPVLQAFKLMR-RKKIGGIPVVEKGG 301 (426)
Q Consensus 277 ~~v~~a~~~m~-~~~~~~lpVvd~~~ 301 (426)
..+...++.+. ..+...+.|+|.+|
T Consensus 41 ~~l~~~~~~~~~~~~~~~i~v~d~~G 66 (142)
T 3by8_A 41 SGIQAIAEAVRKRNDLLFIVVTDMQS 66 (142)
T ss_dssp CSHHHHHHHHHHHTTCSEEEEEETTC
T ss_pred HHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 45667666655 46788899999877
Done!