Query 014354
Match_columns 426
No_of_seqs 379 out of 3352
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:18:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1532 GTPase XAB1, interacts 100.0 6.3E-55 1.4E-59 403.4 27.0 299 66-364 16-316 (366)
2 COG1159 Era GTPase [General fu 100.0 2E-37 4.4E-42 293.3 17.1 215 67-362 4-221 (298)
3 PF03029 ATP_bind_1: Conserved 100.0 4.1E-33 8.9E-38 264.1 13.8 235 74-313 1-237 (238)
4 TIGR00436 era GTP-binding prot 100.0 2.1E-31 4.6E-36 257.8 15.1 210 71-362 2-213 (270)
5 PRK15494 era GTPase Era; Provi 100.0 1.8E-30 3.9E-35 258.8 15.4 214 67-362 50-265 (339)
6 PRK00089 era GTPase Era; Revie 100.0 7.1E-30 1.5E-34 249.9 15.3 214 68-362 4-220 (292)
7 KOG1423 Ras-like GTPase ERA [C 100.0 1.6E-29 3.4E-34 238.2 13.0 242 66-366 69-324 (379)
8 PRK13768 GTPase; Provisional 99.9 2.9E-25 6.2E-30 212.8 20.8 242 70-313 3-247 (253)
9 PRK12298 obgE GTPase CgtA; Rev 99.9 5.8E-24 1.3E-28 215.0 17.9 196 70-342 160-362 (390)
10 KOG1533 Predicted GTPase [Gene 99.9 2.8E-23 6E-28 189.5 14.5 238 71-311 4-251 (290)
11 KOG1534 Putative transcription 99.9 3.3E-23 7.1E-28 186.1 13.2 243 70-315 4-253 (273)
12 PF02421 FeoB_N: Ferrous iron 99.9 1.1E-22 2.5E-27 179.6 9.0 155 71-308 2-156 (156)
13 PRK09435 membrane ATPase/prote 99.9 1.3E-20 2.8E-25 185.9 19.8 235 66-349 53-296 (332)
14 COG1160 Predicted GTPases [Gen 99.9 4.8E-21 1E-25 191.4 15.4 160 70-313 4-165 (444)
15 COG1160 Predicted GTPases [Gen 99.9 7.3E-21 1.6E-25 190.0 16.7 182 67-324 176-362 (444)
16 KOG1490 GTP-binding protein CR 99.8 5.1E-21 1.1E-25 190.8 9.9 176 63-314 162-342 (620)
17 PF03308 ArgK: ArgK protein; 99.8 5.9E-19 1.3E-23 165.6 21.2 232 68-347 28-264 (266)
18 COG1703 ArgK Putative periplas 99.8 2.6E-18 5.6E-23 163.1 21.7 235 66-349 48-290 (323)
19 COG0486 ThdF Predicted GTPase 99.8 3.5E-19 7.5E-24 178.5 15.5 164 65-315 213-378 (454)
20 PF00009 GTP_EFTU: Elongation 99.8 9.4E-20 2E-24 166.9 10.3 183 68-313 2-187 (188)
21 PRK12299 obgE GTPase CgtA; Rev 99.8 2.5E-18 5.3E-23 170.9 17.9 167 69-315 158-330 (335)
22 cd01897 NOG NOG1 is a nucleola 99.8 4.4E-18 9.5E-23 151.9 16.1 162 70-312 1-167 (168)
23 cd04171 SelB SelB subfamily. 99.8 5E-18 1.1E-22 150.3 16.2 113 165-310 50-163 (164)
24 PRK03003 GTP-binding protein D 99.8 6.6E-18 1.4E-22 175.9 19.0 178 68-322 210-391 (472)
25 PRK12296 obgE GTPase CgtA; Rev 99.8 3.9E-18 8.4E-23 175.9 16.8 170 69-316 159-343 (500)
26 cd04163 Era Era subfamily. Er 99.8 6.8E-18 1.5E-22 148.8 15.9 162 69-311 3-167 (168)
27 TIGR03594 GTPase_EngA ribosome 99.8 1.3E-17 2.9E-22 171.7 20.0 178 68-321 171-352 (429)
28 TIGR02729 Obg_CgtA Obg family 99.8 7.5E-18 1.6E-22 167.2 17.3 167 69-312 157-328 (329)
29 cd01898 Obg Obg subfamily. Th 99.8 1.1E-17 2.5E-22 149.4 16.7 165 71-311 2-169 (170)
30 COG1084 Predicted GTPase [Gene 99.8 7.8E-18 1.7E-22 161.5 16.0 174 61-314 160-337 (346)
31 cd00881 GTP_translation_factor 99.8 5.4E-18 1.2E-22 153.7 14.2 186 71-313 1-187 (189)
32 PRK09518 bifunctional cytidyla 99.8 1.3E-17 2.7E-22 181.7 19.6 178 68-322 449-630 (712)
33 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.6E-17 3.5E-22 156.4 17.4 215 71-310 1-220 (224)
34 PRK00093 GTP-binding protein D 99.8 1.5E-17 3.2E-22 171.7 18.5 177 68-320 172-351 (435)
35 TIGR03156 GTP_HflX GTP-binding 99.8 1.5E-17 3.3E-22 166.4 17.3 162 68-311 188-350 (351)
36 cd01878 HflX HflX subfamily. 99.8 1.6E-17 3.5E-22 153.7 16.2 163 68-311 40-203 (204)
37 cd01895 EngA2 EngA2 subfamily. 99.8 4.1E-17 8.8E-22 145.2 17.3 167 69-311 2-173 (174)
38 COG0532 InfB Translation initi 99.8 6.3E-18 1.4E-22 171.7 13.5 169 67-314 3-171 (509)
39 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.5E-17 3.2E-22 148.2 14.2 118 165-313 49-166 (168)
40 PRK12297 obgE GTPase CgtA; Rev 99.7 2.5E-17 5.5E-22 167.8 16.3 164 71-317 160-331 (424)
41 TIGR03598 GTPase_YsxC ribosome 99.7 4.3E-17 9.4E-22 148.0 15.9 162 64-302 13-179 (179)
42 cd01879 FeoB Ferrous iron tran 99.7 2.6E-17 5.5E-22 145.0 14.0 113 166-311 43-155 (158)
43 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1.1E-17 2.3E-22 149.2 11.6 115 165-310 49-166 (167)
44 cd01894 EngA1 EngA1 subfamily. 99.7 2.4E-17 5.2E-22 144.7 13.3 111 165-311 44-156 (157)
45 KOG1145 Mitochondrial translat 99.7 2.2E-17 4.8E-22 166.5 14.1 168 64-312 148-315 (683)
46 cd01889 SelB_euk SelB subfamil 99.7 1E-16 2.2E-21 147.1 17.4 120 164-314 66-187 (192)
47 COG0536 Obg Predicted GTPase [ 99.7 2.9E-17 6.3E-22 158.3 13.8 170 70-316 160-336 (369)
48 cd01884 EF_Tu EF-Tu subfamily. 99.7 6.1E-17 1.3E-21 149.3 15.5 108 164-302 63-172 (195)
49 cd01890 LepA LepA subfamily. 99.7 3.3E-17 7.2E-22 147.9 13.4 113 164-313 65-177 (179)
50 TIGR00491 aIF-2 translation in 99.7 5.4E-17 1.2E-21 171.7 16.9 136 166-314 69-217 (590)
51 cd01888 eIF2_gamma eIF2-gamma 99.7 5.4E-17 1.2E-21 150.6 14.9 115 166-314 83-200 (203)
52 PRK03003 GTP-binding protein D 99.7 4.1E-17 8.8E-22 170.0 14.7 162 68-314 37-200 (472)
53 PRK04213 GTP-binding protein; 99.7 9.8E-17 2.1E-21 148.0 15.6 171 68-314 8-193 (201)
54 PRK05291 trmE tRNA modificatio 99.7 5.5E-17 1.2E-21 167.6 15.4 157 67-314 213-371 (449)
55 PRK09866 hypothetical protein; 99.7 2.4E-16 5.1E-21 163.7 19.9 118 165-310 229-350 (741)
56 cd04138 H_N_K_Ras_like H-Ras/N 99.7 6.6E-17 1.4E-21 142.6 13.7 112 166-311 49-160 (162)
57 cd00157 Rho Rho (Ras homology) 99.7 4.5E-17 9.7E-22 145.5 12.6 167 71-310 2-170 (171)
58 TIGR03594 GTPase_EngA ribosome 99.7 4.3E-17 9.4E-22 167.9 14.0 159 71-314 1-161 (429)
59 COG1163 DRG Predicted GTPase [ 99.7 6.9E-17 1.5E-21 154.5 14.2 169 61-313 55-289 (365)
60 cd04112 Rab26 Rab26 subfamily. 99.7 4.9E-17 1.1E-21 149.2 12.8 170 71-321 2-171 (191)
61 smart00173 RAS Ras subfamily o 99.7 7.4E-17 1.6E-21 143.3 13.5 161 71-313 2-162 (164)
62 cd01881 Obg_like The Obg-like 99.7 1E-16 2.2E-21 143.7 14.3 120 165-311 43-175 (176)
63 cd04145 M_R_Ras_like M-Ras/R-R 99.7 8.8E-17 1.9E-21 142.6 13.6 160 70-312 3-163 (164)
64 PRK11058 GTPase HflX; Provisio 99.7 1.9E-16 4E-21 162.2 17.8 166 69-314 197-363 (426)
65 TIGR00750 lao LAO/AO transport 99.7 1.5E-15 3.3E-20 149.2 23.3 235 65-349 30-274 (300)
66 PLN03071 GTP-binding nuclear p 99.7 7.9E-17 1.7E-21 151.3 13.1 193 67-346 11-213 (219)
67 cd04147 Ras_dva Ras-dva subfam 99.7 6.8E-17 1.5E-21 149.1 12.5 123 166-320 47-170 (198)
68 KOG1489 Predicted GTP-binding 99.7 1.3E-16 2.9E-21 152.0 14.6 164 69-310 196-364 (366)
69 cd04136 Rap_like Rap-like subf 99.7 6.5E-17 1.4E-21 143.3 11.8 159 70-311 2-161 (163)
70 cd04154 Arl2 Arl2 subfamily. 99.7 4.8E-17 1E-21 146.5 10.9 160 68-310 13-172 (173)
71 PRK00454 engB GTP-binding prot 99.7 5.9E-16 1.3E-20 141.8 18.3 170 66-314 21-195 (196)
72 TIGR00487 IF-2 translation ini 99.7 1.4E-16 3E-21 168.8 16.0 165 65-310 83-247 (587)
73 COG0370 FeoB Fe2+ transport sy 99.7 6.8E-17 1.5E-21 168.4 13.3 175 70-327 4-182 (653)
74 cd04149 Arf6 Arf6 subfamily. 99.7 7.8E-17 1.7E-21 144.9 12.0 157 68-310 8-167 (168)
75 cd04158 ARD1 ARD1 subfamily. 99.7 6.3E-17 1.4E-21 145.4 11.2 120 164-317 41-165 (169)
76 cd04139 RalA_RalB RalA/RalB su 99.7 1.7E-16 3.6E-21 140.5 13.5 161 71-313 2-162 (164)
77 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1.8E-16 3.8E-21 144.5 14.0 123 164-315 50-172 (183)
78 PRK05306 infB translation init 99.7 1.2E-16 2.7E-21 173.1 15.1 164 65-310 286-449 (787)
79 cd04164 trmE TrmE (MnmE, ThdF, 99.7 2.8E-16 6E-21 137.7 14.6 154 69-311 1-155 (157)
80 PRK09602 translation-associate 99.7 2.4E-16 5.3E-21 159.8 16.2 85 230-346 216-301 (396)
81 cd04175 Rap1 Rap1 subgroup. T 99.7 1.3E-16 2.8E-21 142.0 12.4 114 165-312 48-162 (164)
82 CHL00189 infB translation init 99.7 1.2E-16 2.7E-21 171.7 14.5 169 66-312 241-409 (742)
83 cd04151 Arl1 Arl1 subfamily. 99.7 7E-17 1.5E-21 143.1 10.5 113 165-310 42-157 (158)
84 KOG1144 Translation initiation 99.7 1E-16 2.2E-21 165.8 12.7 204 66-314 472-688 (1064)
85 cd04157 Arl6 Arl6 subfamily. 99.7 1.1E-16 2.4E-21 141.6 11.3 117 164-310 43-161 (162)
86 cd04119 RJL RJL (RabJ-Like) su 99.7 1.6E-16 3.6E-21 141.0 12.4 160 71-312 2-166 (168)
87 COG0523 Putative GTPases (G3E 99.7 1.3E-16 2.9E-21 156.9 12.7 166 70-260 2-174 (323)
88 PRK04004 translation initiatio 99.7 5.6E-16 1.2E-20 164.5 18.3 128 167-312 72-217 (586)
89 cd01862 Rab7 Rab7 subfamily. 99.7 2.4E-16 5.3E-21 140.8 13.0 117 166-315 49-169 (172)
90 COG2262 HflX GTPases [General 99.7 4.4E-16 9.5E-21 153.8 15.8 165 67-316 190-359 (411)
91 cd01864 Rab19 Rab19 subfamily. 99.7 2.4E-16 5.1E-21 140.6 12.7 113 166-311 52-164 (165)
92 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 2.9E-16 6.4E-21 145.2 13.6 118 166-315 50-170 (201)
93 cd04150 Arf1_5_like Arf1-Arf5- 99.7 1.4E-16 3E-21 141.9 10.8 113 165-310 43-158 (159)
94 smart00174 RHO Rho (Ras homolo 99.7 2.2E-16 4.8E-21 141.8 12.1 123 166-312 46-171 (174)
95 PRK09554 feoB ferrous iron tra 99.7 2.6E-16 5.6E-21 171.4 14.8 162 69-313 3-168 (772)
96 PRK09518 bifunctional cytidyla 99.7 3E-16 6.5E-21 171.0 15.4 163 67-314 273-437 (712)
97 cd04140 ARHI_like ARHI subfami 99.7 3.7E-16 8.1E-21 139.5 13.3 159 70-311 2-163 (165)
98 cd04135 Tc10 TC10 subfamily. 99.7 3.1E-16 6.7E-21 140.8 12.8 124 166-312 48-173 (174)
99 smart00178 SAR Sar1p-like memb 99.7 1.7E-16 3.7E-21 144.8 11.0 165 68-311 16-183 (184)
100 cd00878 Arf_Arl Arf (ADP-ribos 99.7 2.5E-16 5.4E-21 139.2 11.6 116 165-310 42-157 (158)
101 cd01874 Cdc42 Cdc42 subfamily. 99.7 3.9E-16 8.5E-21 141.3 13.1 170 70-311 2-173 (175)
102 PLN03118 Rab family protein; P 99.7 8.7E-16 1.9E-20 143.1 15.8 172 66-319 11-183 (211)
103 cd04134 Rho3 Rho3 subfamily. 99.7 3.3E-16 7.2E-21 143.5 12.7 171 71-313 2-174 (189)
104 PRK00093 GTP-binding protein D 99.7 4.8E-16 1E-20 160.5 15.4 156 70-310 2-159 (435)
105 cd04142 RRP22 RRP22 subfamily. 99.7 6E-16 1.3E-20 143.1 14.4 170 71-315 2-176 (198)
106 cd04124 RabL2 RabL2 subfamily. 99.7 6.1E-16 1.3E-20 137.7 13.9 111 165-315 48-160 (161)
107 TIGR02528 EutP ethanolamine ut 99.7 8.3E-16 1.8E-20 133.6 14.3 104 169-309 38-141 (142)
108 cd04176 Rap2 Rap2 subgroup. T 99.7 3E-16 6.5E-21 139.4 11.6 109 166-311 49-161 (163)
109 cd04166 CysN_ATPS CysN_ATPS su 99.7 8.6E-16 1.9E-20 143.1 15.2 120 164-323 75-197 (208)
110 cd04156 ARLTS1 ARLTS1 subfamil 99.7 4.7E-16 1E-20 137.6 12.8 117 165-310 43-159 (160)
111 cd04132 Rho4_like Rho4-like su 99.7 5.1E-16 1.1E-20 141.4 13.2 167 71-318 2-172 (187)
112 cd04137 RheB Rheb (Ras Homolog 99.7 5.5E-16 1.2E-20 140.2 13.1 116 166-314 49-164 (180)
113 smart00177 ARF ARF-like small 99.7 3.3E-16 7.3E-21 141.7 11.6 116 164-312 55-173 (175)
114 TIGR00101 ureG urease accessor 99.7 8.5E-16 1.8E-20 142.1 14.4 188 69-312 1-195 (199)
115 cd04155 Arl3 Arl3 subfamily. 99.7 2.8E-16 6.1E-21 141.0 10.9 160 68-310 13-172 (173)
116 PTZ00369 Ras-like protein; Pro 99.7 6E-16 1.3E-20 141.7 13.1 163 69-314 5-168 (189)
117 PRK10512 selenocysteinyl-tRNA- 99.7 6.6E-16 1.4E-20 164.8 15.3 115 166-313 51-166 (614)
118 cd01865 Rab3 Rab3 subfamily. 99.7 1E-15 2.2E-20 136.8 14.1 159 70-313 2-163 (165)
119 cd01893 Miro1 Miro1 subfamily. 99.7 1.3E-15 2.9E-20 136.1 14.9 162 71-312 2-163 (166)
120 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 2.9E-16 6.3E-21 141.8 10.7 156 69-310 15-173 (174)
121 cd01866 Rab2 Rab2 subfamily. 99.7 1E-15 2.3E-20 137.1 14.1 160 69-313 4-166 (168)
122 TIGR00073 hypB hydrogenase acc 99.7 1.8E-15 3.9E-20 140.8 16.1 183 67-311 20-205 (207)
123 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 1.1E-15 2.3E-20 136.4 13.7 162 70-313 3-164 (166)
124 smart00175 RAB Rab subfamily o 99.7 7.9E-16 1.7E-20 136.3 12.8 112 166-314 49-163 (164)
125 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 9.3E-16 2E-20 138.1 13.4 161 71-314 2-166 (170)
126 TIGR00475 selB selenocysteine- 99.7 7.7E-16 1.7E-20 163.6 15.0 117 166-314 50-167 (581)
127 PRK15467 ethanolamine utilizat 99.7 1.7E-15 3.7E-20 135.0 14.9 108 170-314 41-148 (158)
128 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 1.5E-15 3.2E-20 137.1 14.7 162 70-314 3-165 (172)
129 KOG2743 Cobalamin synthesis pr 99.7 1E-15 2.2E-20 144.6 13.9 193 64-287 52-252 (391)
130 cd00880 Era_like Era (E. coli 99.7 1.3E-15 2.7E-20 132.5 13.6 118 165-311 44-162 (163)
131 cd00877 Ran Ran (Ras-related n 99.7 8E-16 1.7E-20 137.9 12.6 113 165-314 48-160 (166)
132 cd01870 RhoA_like RhoA-like su 99.7 7.8E-16 1.7E-20 138.4 12.5 171 70-312 2-174 (175)
133 cd04177 RSR1 RSR1 subgroup. R 99.7 9.9E-16 2.1E-20 137.2 13.0 114 166-312 49-163 (168)
134 cd01867 Rab8_Rab10_Rab13_like 99.7 1.2E-15 2.7E-20 136.4 13.5 163 69-313 3-165 (167)
135 cd04144 Ras2 Ras2 subfamily. 99.7 9.9E-16 2.1E-20 140.4 13.1 115 166-314 47-164 (190)
136 TIGR00450 mnmE_trmE_thdF tRNA 99.7 1.5E-15 3.3E-20 156.3 15.9 161 66-315 200-362 (442)
137 cd01863 Rab18 Rab18 subfamily. 99.7 8.9E-16 1.9E-20 136.0 12.2 111 166-311 49-160 (161)
138 PLN00223 ADP-ribosylation fact 99.7 1.2E-15 2.5E-20 139.1 13.2 116 164-313 59-178 (181)
139 cd04168 TetM_like Tet(M)-like 99.7 1.9E-15 4.1E-20 143.6 15.1 135 164-313 62-235 (237)
140 cd04159 Arl10_like Arl10-like 99.7 5.8E-16 1.3E-20 135.5 10.8 154 72-310 2-158 (159)
141 cd04122 Rab14 Rab14 subfamily. 99.7 1.8E-15 3.8E-20 135.2 14.1 161 70-312 3-163 (166)
142 cd01861 Rab6 Rab6 subfamily. 99.7 8.9E-16 1.9E-20 135.8 11.9 155 71-311 2-160 (161)
143 cd01868 Rab11_like Rab11-like. 99.7 1.5E-15 3.2E-20 135.2 13.3 158 70-312 4-164 (165)
144 cd01871 Rac1_like Rac1-like su 99.7 1.2E-15 2.6E-20 138.1 12.8 168 70-310 2-172 (174)
145 PTZ00133 ADP-ribosylation fact 99.7 1.7E-15 3.6E-20 138.1 13.5 117 165-314 60-179 (182)
146 cd04113 Rab4 Rab4 subfamily. 99.6 1E-15 2.2E-20 135.7 11.8 112 166-311 49-160 (161)
147 cd04104 p47_IIGP_like p47 (47- 99.6 7.6E-15 1.6E-19 135.5 17.9 125 166-316 52-187 (197)
148 cd04127 Rab27A Rab27a subfamil 99.6 3.5E-15 7.6E-20 134.8 15.4 111 166-313 63-177 (180)
149 cd04109 Rab28 Rab28 subfamily. 99.6 1.6E-15 3.5E-20 141.9 13.5 163 71-314 2-167 (215)
150 PRK10463 hydrogenase nickel in 99.6 4.8E-15 1E-19 143.0 17.0 180 66-311 101-287 (290)
151 cd00879 Sar1 Sar1 subfamily. 99.6 1.8E-15 4E-20 138.1 13.4 169 68-311 18-189 (190)
152 cd01891 TypA_BipA TypA (tyrosi 99.6 2.6E-15 5.6E-20 138.1 14.4 112 164-305 63-174 (194)
153 cd01886 EF-G Elongation factor 99.6 3.1E-15 6.7E-20 144.7 15.2 70 164-246 62-131 (270)
154 PRK12736 elongation factor Tu; 99.6 2.3E-15 5E-20 153.4 15.0 118 164-313 73-201 (394)
155 cd01875 RhoG RhoG subfamily. 99.6 3.1E-15 6.6E-20 137.4 14.3 173 69-313 3-177 (191)
156 cd04101 RabL4 RabL4 (Rab-like4 99.6 1.9E-15 4.2E-20 134.2 12.5 111 165-312 51-163 (164)
157 COG0218 Predicted GTPase [Gene 99.6 1.2E-14 2.7E-19 131.5 17.8 173 66-314 21-198 (200)
158 cd01860 Rab5_related Rab5-rela 99.6 2.5E-15 5.4E-20 133.2 13.0 158 70-312 2-162 (163)
159 cd00154 Rab Rab family. Rab G 99.6 3.6E-15 7.9E-20 130.2 13.9 154 71-309 2-158 (159)
160 cd01896 DRG The developmentall 99.6 1.9E-15 4E-20 143.3 12.7 89 71-211 2-91 (233)
161 TIGR00231 small_GTP small GTP- 99.6 2.4E-15 5.1E-20 130.7 12.4 156 70-309 2-160 (161)
162 CHL00071 tufA elongation facto 99.6 4.5E-15 9.7E-20 152.0 16.2 169 67-301 10-181 (409)
163 cd04130 Wrch_1 Wrch-1 subfamil 99.6 3.7E-15 8E-20 134.2 13.7 122 166-310 48-171 (173)
164 cd00876 Ras Ras family. The R 99.6 1.8E-15 3.9E-20 133.1 11.5 113 166-311 47-159 (160)
165 cd04120 Rab12 Rab12 subfamily. 99.6 2.7E-15 5.8E-20 139.2 13.0 162 71-313 2-163 (202)
166 cd04116 Rab9 Rab9 subfamily. 99.6 1.2E-15 2.6E-20 136.6 10.2 163 68-311 4-169 (170)
167 cd01876 YihA_EngB The YihA (En 99.6 1.9E-14 4.1E-19 127.1 17.4 119 167-311 46-169 (170)
168 cd04115 Rab33B_Rab33A Rab33B/R 99.6 5E-15 1.1E-19 133.0 13.8 162 69-312 2-168 (170)
169 cd04126 Rab20 Rab20 subfamily. 99.6 4.9E-15 1.1E-19 139.1 14.3 170 71-314 2-191 (220)
170 cd04114 Rab30 Rab30 subfamily. 99.6 5.7E-15 1.2E-19 131.8 14.0 161 68-311 6-167 (169)
171 cd04161 Arl2l1_Arl13_like Arl2 99.6 1.3E-15 2.9E-20 136.6 10.0 116 164-310 41-166 (167)
172 cd04111 Rab39 Rab39 subfamily. 99.6 5.6E-15 1.2E-19 137.9 14.3 165 70-315 3-168 (211)
173 cd04118 Rab24 Rab24 subfamily. 99.6 6.2E-15 1.4E-19 135.0 14.2 114 166-314 50-167 (193)
174 cd04106 Rab23_lke Rab23-like s 99.6 4.9E-15 1.1E-19 131.2 13.1 108 166-310 51-160 (162)
175 cd04169 RF3 RF3 subfamily. Pe 99.6 9.1E-15 2E-19 141.3 16.0 136 70-246 3-138 (267)
176 cd04123 Rab21 Rab21 subfamily. 99.6 3.1E-15 6.7E-20 131.9 11.7 113 166-312 49-161 (162)
177 cd04128 Spg1 Spg1p. Spg1p (se 99.6 5.8E-15 1.3E-19 134.6 13.7 163 71-314 2-167 (182)
178 PLN03127 Elongation factor Tu; 99.6 7.2E-15 1.6E-19 151.5 16.0 118 164-313 122-252 (447)
179 TIGR03680 eif2g_arch translati 99.6 5.6E-15 1.2E-19 151.1 15.1 116 165-313 79-196 (406)
180 TIGR00437 feoB ferrous iron tr 99.6 2.6E-15 5.7E-20 159.8 12.4 115 165-312 40-154 (591)
181 cd04110 Rab35 Rab35 subfamily. 99.6 8.9E-15 1.9E-19 135.2 14.3 162 68-314 5-168 (199)
182 KOG0394 Ras-related GTPase [Ge 99.6 1.9E-15 4.1E-20 133.5 8.8 172 67-316 7-181 (210)
183 cd01892 Miro2 Miro2 subfamily. 99.6 6.3E-15 1.4E-19 132.5 12.5 162 67-312 2-165 (169)
184 cd04143 Rhes_like Rhes_like su 99.6 9.6E-15 2.1E-19 139.6 14.4 160 71-312 2-170 (247)
185 cd04146 RERG_RasL11_like RERG/ 99.6 4.1E-15 8.8E-20 132.6 11.1 114 166-312 47-163 (165)
186 PRK12317 elongation factor 1-a 99.6 7.3E-15 1.6E-19 151.3 14.4 110 164-305 82-197 (425)
187 cd04131 Rnd Rnd subfamily. Th 99.6 8.8E-15 1.9E-19 133.0 13.4 170 70-311 2-174 (178)
188 PRK12735 elongation factor Tu; 99.6 8E-15 1.7E-19 149.5 14.4 117 164-312 73-202 (396)
189 KOG1191 Mitochondrial GTPase [ 99.6 3.2E-15 6.9E-20 149.9 11.1 173 66-314 265-451 (531)
190 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 1.3E-14 2.8E-19 132.4 14.3 172 68-311 4-178 (182)
191 cd01883 EF1_alpha Eukaryotic e 99.6 2.8E-15 6E-20 140.8 10.1 108 164-302 75-194 (219)
192 cd04125 RabA_like RabA-like su 99.6 1.1E-14 2.3E-19 133.1 13.6 116 166-315 49-164 (188)
193 PTZ00327 eukaryotic translatio 99.6 1.4E-14 3E-19 149.4 15.9 116 166-314 117-234 (460)
194 PRK05124 cysN sulfate adenylyl 99.6 5.7E-15 1.2E-19 153.5 12.9 110 164-305 105-217 (474)
195 PF10662 PduV-EutP: Ethanolami 99.6 2E-14 4.2E-19 124.7 14.0 140 70-309 2-142 (143)
196 PLN03110 Rab GTPase; Provision 99.6 1.2E-14 2.5E-19 136.3 13.6 161 68-314 11-175 (216)
197 PRK05506 bifunctional sulfate 99.6 5.8E-15 1.3E-19 159.0 13.0 108 164-304 102-212 (632)
198 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 4.1E-15 8.9E-20 133.1 9.9 114 164-309 42-162 (164)
199 cd04148 RGK RGK subfamily. Th 99.6 1.1E-14 2.4E-19 136.9 13.2 112 165-314 49-164 (221)
200 cd04117 Rab15 Rab15 subfamily. 99.6 1.4E-14 3.1E-19 129.0 13.1 111 166-311 49-160 (161)
201 TIGR02034 CysN sulfate adenyly 99.6 1.2E-14 2.5E-19 148.7 14.2 108 164-304 78-188 (406)
202 cd04133 Rop_like Rop subfamily 99.6 1.8E-14 3.8E-19 130.8 13.7 169 70-312 2-172 (176)
203 TIGR01393 lepA GTP-binding pro 99.6 7.8E-15 1.7E-19 156.2 12.9 112 166-314 70-181 (595)
204 PRK00049 elongation factor Tu; 99.6 1.9E-14 4.2E-19 146.6 14.7 116 164-311 73-201 (396)
205 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 4E-14 8.6E-19 133.9 15.4 175 68-314 12-189 (232)
206 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 1.6E-14 3.6E-19 135.7 12.7 171 70-312 2-175 (222)
207 cd04167 Snu114p Snu114p subfam 99.6 1.8E-14 3.9E-19 134.6 12.9 67 165-244 70-136 (213)
208 cd01899 Ygr210 Ygr210 subfamil 99.6 1.9E-14 4E-19 142.0 13.4 61 230-318 213-274 (318)
209 cd04121 Rab40 Rab40 subfamily. 99.6 3.4E-14 7.3E-19 130.5 13.7 162 68-314 5-168 (189)
210 PRK05433 GTP-binding protein L 99.6 2.1E-14 4.6E-19 153.0 14.2 113 165-314 73-185 (600)
211 TIGR00485 EF-Tu translation el 99.6 3.1E-14 6.6E-19 145.2 14.5 105 164-299 73-179 (394)
212 PRK04000 translation initiatio 99.6 3.4E-14 7.4E-19 145.4 14.8 114 166-313 85-201 (411)
213 cd00882 Ras_like_GTPase Ras-li 99.6 1.5E-14 3.3E-19 124.0 10.2 113 165-309 44-156 (157)
214 PLN03108 Rab family protein; P 99.6 7.3E-14 1.6E-18 130.3 14.9 165 68-314 5-169 (210)
215 TIGR01394 TypA_BipA GTP-bindin 99.6 4.6E-14 9.9E-19 150.1 14.9 122 163-314 61-192 (594)
216 cd04129 Rho2 Rho2 subfamily. 99.6 2.8E-14 6.1E-19 130.4 11.5 122 166-314 49-174 (187)
217 PF00025 Arf: ADP-ribosylation 99.6 2.6E-14 5.6E-19 129.5 11.0 157 67-311 12-174 (175)
218 PRK12739 elongation factor G; 99.5 7.3E-14 1.6E-18 151.9 16.3 135 67-246 6-140 (691)
219 cd04170 EF-G_bact Elongation f 99.5 9.8E-15 2.1E-19 141.2 8.2 110 164-311 62-171 (268)
220 PLN03126 Elongation factor Tu; 99.5 5.5E-14 1.2E-18 145.9 14.2 106 164-301 142-250 (478)
221 TIGR02475 CobW cobalamin biosy 99.5 5.3E-14 1.1E-18 140.3 13.4 174 68-260 3-202 (341)
222 smart00176 RAN Ran (Ras-relate 99.5 4.1E-14 9E-19 131.0 11.6 111 165-314 43-155 (200)
223 KOG0462 Elongation factor-type 99.5 1.6E-14 3.4E-19 146.1 9.3 180 67-315 58-237 (650)
224 PF02492 cobW: CobW/HypB/UreG, 99.5 2.7E-14 5.9E-19 129.8 9.8 165 70-260 1-171 (178)
225 PRK00007 elongation factor G; 99.5 9.6E-14 2.1E-18 150.9 15.7 71 164-247 73-143 (693)
226 TIGR00484 EF-G translation elo 99.5 1E-13 2.2E-18 150.7 15.8 136 67-247 8-143 (689)
227 PF01926 MMR_HSR1: 50S ribosom 99.5 2.8E-14 6.1E-19 120.1 8.1 115 71-240 1-116 (116)
228 cd04103 Centaurin_gamma Centau 99.5 9.6E-14 2.1E-18 123.6 11.7 108 166-311 47-157 (158)
229 PTZ00141 elongation factor 1- 99.5 1E-13 2.2E-18 143.1 13.1 108 164-303 83-203 (446)
230 PTZ00132 GTP-binding nuclear p 99.5 1.1E-13 2.4E-18 129.3 12.1 118 164-320 56-175 (215)
231 TIGR00483 EF-1_alpha translati 99.5 2.6E-13 5.6E-18 139.8 15.8 112 164-306 83-200 (426)
232 PRK00741 prfC peptide chain re 99.5 2.3E-13 5E-18 142.9 15.5 139 68-247 9-147 (526)
233 PRK10218 GTP-binding protein; 99.5 1.8E-13 4E-18 145.4 14.9 121 164-314 66-196 (607)
234 KOG0084 GTPase Rab1/YPT1, smal 99.5 1.1E-13 2.3E-18 124.0 11.0 166 67-316 7-175 (205)
235 cd01885 EF2 EF2 (for archaea a 99.5 2E-13 4.3E-18 128.3 13.3 67 165-244 72-138 (222)
236 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 1.3E-13 2.8E-18 127.1 11.9 182 71-321 2-193 (196)
237 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.5 1.1E-13 2.4E-18 123.5 10.6 162 68-315 21-187 (221)
238 KOG0092 GTPase Rab5/YPT51 and 99.5 6.6E-14 1.4E-18 124.9 8.9 165 68-317 4-171 (200)
239 PRK11537 putative GTP-binding 99.5 6.1E-14 1.3E-18 138.5 9.6 165 68-260 3-177 (318)
240 cd04105 SR_beta Signal recogni 99.5 6.3E-13 1.4E-17 123.4 13.9 139 165-310 47-202 (203)
241 TIGR00503 prfC peptide chain r 99.5 7.6E-13 1.6E-17 139.0 16.1 137 68-245 10-146 (527)
242 PRK13351 elongation factor G; 99.5 6.1E-13 1.3E-17 144.9 15.9 70 164-246 71-140 (687)
243 KOG0098 GTPase Rab2, small G p 99.5 2.9E-13 6.3E-18 120.0 10.7 165 68-314 5-169 (216)
244 cd01873 RhoBTB RhoBTB subfamil 99.5 4.6E-13 1E-17 123.5 12.6 128 164-310 64-193 (195)
245 cd03112 CobW_like The function 99.5 2.2E-13 4.7E-18 121.5 9.4 153 70-243 1-158 (158)
246 COG0378 HypB Ni2+-binding GTPa 99.5 6.3E-13 1.4E-17 119.6 12.1 178 69-311 13-199 (202)
247 cd01882 BMS1 Bms1. Bms1 is an 99.5 1.6E-12 3.5E-17 122.6 15.6 145 66-299 36-182 (225)
248 KOG0078 GTP-binding protein SE 99.5 7.2E-13 1.6E-17 120.2 12.4 165 66-314 9-175 (207)
249 PF00071 Ras: Ras family; Int 99.4 4.3E-13 9.3E-18 118.8 10.1 158 71-313 1-161 (162)
250 COG1100 GTPase SAR1 and relate 99.4 1.3E-12 2.9E-17 121.7 13.7 181 70-317 6-189 (219)
251 COG5257 GCD11 Translation init 99.4 6E-13 1.3E-17 127.2 11.1 116 167-315 87-204 (415)
252 PLN00043 elongation factor 1-a 99.4 6.6E-13 1.4E-17 137.1 12.3 114 164-303 83-203 (447)
253 COG2229 Predicted GTPase [Gene 99.4 7.9E-12 1.7E-16 111.1 15.1 164 68-311 9-176 (187)
254 KOG0073 GTP-binding ADP-ribosy 99.4 3.8E-12 8.3E-17 110.6 12.6 163 68-314 15-179 (185)
255 COG1116 TauB ABC-type nitrate/ 99.4 1.9E-12 4.2E-17 121.0 11.0 147 59-207 19-191 (248)
256 KOG0087 GTPase Rab11/YPT3, sma 99.4 1.4E-12 3E-17 118.0 8.8 162 66-312 11-175 (222)
257 COG3596 Predicted GTPase [Gene 99.4 1.5E-11 3.2E-16 116.1 15.3 185 65-314 35-223 (296)
258 PRK14845 translation initiatio 99.4 3.4E-12 7.4E-17 141.7 12.7 132 166-314 526-674 (1049)
259 COG0481 LepA Membrane GTPase L 99.4 1.3E-12 2.9E-17 130.4 8.3 181 67-314 7-187 (603)
260 COG1217 TypA Predicted membran 99.4 8.3E-12 1.8E-16 124.5 13.7 183 68-314 4-196 (603)
261 PRK12740 elongation factor G; 99.4 6.2E-12 1.4E-16 136.7 14.0 70 164-246 58-127 (668)
262 PTZ00258 GTP-binding protein; 99.4 1.2E-11 2.6E-16 124.6 14.9 106 67-208 19-126 (390)
263 COG5256 TEF1 Translation elong 99.4 1.4E-11 3E-16 122.0 14.8 108 165-305 84-203 (428)
264 KOG0095 GTPase Rab30, small G 99.3 7.8E-12 1.7E-16 106.9 11.0 160 68-313 6-169 (213)
265 KOG0461 Selenocysteine-specifi 99.3 4.2E-11 9.2E-16 115.4 14.5 178 70-314 8-194 (522)
266 KOG0080 GTPase Rab18, small G 99.3 6.2E-12 1.3E-16 108.8 7.7 167 68-318 10-179 (209)
267 COG1121 ZnuC ABC-type Mn/Zn tr 99.3 5.3E-11 1.1E-15 112.7 13.9 115 58-174 19-166 (254)
268 smart00053 DYNc Dynamin, GTPas 99.3 9.1E-11 2E-15 111.2 15.6 79 165-247 124-208 (240)
269 KOG0079 GTP-binding protein H- 99.3 1.2E-11 2.5E-16 105.7 8.4 159 70-314 9-170 (198)
270 cd01850 CDC_Septin CDC/Septin. 99.3 3.2E-11 7E-16 117.1 12.3 55 197-257 114-169 (276)
271 COG2895 CysN GTPases - Sulfate 99.3 3.1E-11 6.7E-16 116.9 11.6 178 67-302 4-192 (431)
272 PRK07560 elongation factor EF- 99.3 3.6E-11 7.8E-16 131.6 13.6 135 68-245 19-153 (731)
273 PF09439 SRPRB: Signal recogni 99.3 4.4E-11 9.6E-16 108.2 11.4 131 69-257 3-138 (181)
274 KOG0086 GTPase Rab4, small G p 99.2 5.2E-11 1.1E-15 102.3 10.2 162 68-314 8-172 (214)
275 KOG0088 GTPase Rab21, small G 99.2 7.5E-11 1.6E-15 101.9 11.0 166 68-315 12-177 (218)
276 PRK10416 signal recognition pa 99.2 6.6E-10 1.4E-14 109.9 19.2 156 67-246 112-274 (318)
277 COG1125 OpuBA ABC-type proline 99.2 5.8E-11 1.3E-15 110.9 10.7 149 59-207 17-196 (309)
278 KOG0093 GTPase Rab3, small G p 99.2 1.3E-10 2.8E-15 99.3 11.8 162 69-315 21-185 (193)
279 COG0480 FusA Translation elong 99.2 5E-11 1.1E-15 128.0 11.3 136 66-247 7-144 (697)
280 COG1126 GlnQ ABC-type polar am 99.2 1.7E-11 3.8E-16 112.0 6.6 128 39-176 6-165 (240)
281 TIGR01425 SRP54_euk signal rec 99.2 2.2E-09 4.8E-14 109.3 22.6 155 67-246 98-254 (429)
282 PRK14974 cell division protein 99.2 8.5E-10 1.8E-14 109.6 18.7 157 67-246 138-294 (336)
283 PLN00116 translation elongatio 99.2 8.5E-11 1.8E-15 130.3 12.7 67 165-244 97-163 (843)
284 PRK09601 GTP-binding protein Y 99.2 2.3E-10 4.9E-15 114.2 14.3 104 70-209 3-108 (364)
285 COG1136 SalX ABC-type antimicr 99.2 1.8E-10 3.8E-15 107.5 12.5 119 59-179 21-175 (226)
286 KOG0075 GTP-binding ADP-ribosy 99.2 4.1E-11 8.9E-16 102.3 7.3 119 164-313 63-182 (186)
287 PTZ00416 elongation factor 2; 99.2 1.1E-10 2.5E-15 129.1 13.0 67 165-244 91-157 (836)
288 KOG0410 Predicted GTP binding 99.2 1.5E-10 3.3E-15 111.0 11.8 155 67-314 176-342 (410)
289 KOG0395 Ras-related GTPase [Ge 99.2 1.4E-10 3E-15 107.0 11.2 164 68-314 2-166 (196)
290 KOG1486 GTP-binding protein DR 99.2 1.3E-10 2.8E-15 107.8 10.7 103 59-213 52-155 (364)
291 COG1120 FepC ABC-type cobalami 99.2 1E-10 2.2E-15 111.2 10.1 146 59-207 18-199 (258)
292 KOG0091 GTPase Rab39, small G 99.2 2.7E-10 5.8E-15 99.1 11.7 160 70-314 9-174 (213)
293 COG0012 Predicted GTPase, prob 99.2 3.9E-10 8.5E-15 111.1 13.3 104 69-209 2-109 (372)
294 KOG0076 GTP-binding ADP-ribosy 99.2 7.7E-11 1.7E-15 103.5 7.2 120 166-315 69-189 (197)
295 COG4604 CeuD ABC-type enteroch 99.2 2.5E-10 5.4E-15 102.9 10.6 160 38-207 4-196 (252)
296 cd04102 RabL3 RabL3 (Rab-like3 99.1 3.3E-10 7.2E-15 105.0 11.0 26 71-96 2-27 (202)
297 TIGR02836 spore_IV_A stage IV 99.1 1.9E-09 4E-14 107.8 16.8 122 166-315 91-236 (492)
298 TIGR00064 ftsY signal recognit 99.1 3.9E-09 8.4E-14 102.3 18.7 157 66-246 69-232 (272)
299 COG3276 SelB Selenocysteine-sp 99.1 5.9E-10 1.3E-14 111.4 13.1 159 71-313 2-162 (447)
300 cd03114 ArgK-like The function 99.1 4.3E-10 9.4E-15 99.1 10.9 144 71-242 1-148 (148)
301 PF08477 Miro: Miro-like prote 99.1 8.9E-11 1.9E-15 98.7 6.0 67 167-242 51-119 (119)
302 COG4108 PrfC Peptide chain rel 99.1 1E-09 2.2E-14 109.2 14.1 138 69-247 12-149 (528)
303 cd01853 Toc34_like Toc34-like 99.1 6E-10 1.3E-14 106.5 11.7 126 68-247 30-165 (249)
304 KOG0083 GTPase Rab26/Rab37, sm 99.1 3.8E-11 8.3E-16 100.8 2.9 120 164-320 45-167 (192)
305 COG4917 EutP Ethanolamine util 99.1 1.6E-09 3.5E-14 90.4 12.2 143 70-311 2-144 (148)
306 KOG0090 Signal recognition par 99.1 5.7E-10 1.2E-14 101.4 10.1 183 69-311 38-237 (238)
307 KOG0081 GTPase Rab27, small G 99.1 4.8E-10 1E-14 97.0 9.1 166 71-314 11-182 (219)
308 KOG0458 Elongation factor 1 al 99.1 6.5E-10 1.4E-14 114.0 11.5 179 66-304 174-373 (603)
309 KOG0097 GTPase Rab14, small G 99.1 7E-10 1.5E-14 94.1 9.6 164 68-314 10-174 (215)
310 COG1127 Ttg2A ABC-type transpo 99.1 9.7E-10 2.1E-14 102.1 11.2 130 37-176 10-176 (263)
311 TIGR00490 aEF-2 translation el 99.1 6.3E-10 1.4E-14 121.7 11.6 71 163-246 83-153 (720)
312 KOG0393 Ras-related small GTPa 99.1 2.5E-10 5.3E-15 104.0 6.8 174 69-315 4-181 (198)
313 COG1131 CcmA ABC-type multidru 99.1 6.8E-10 1.5E-14 108.8 10.3 114 59-174 21-163 (293)
314 COG5258 GTPBP1 GTPase [General 99.1 6.2E-10 1.3E-14 108.9 9.7 217 67-314 115-339 (527)
315 COG1137 YhbG ABC-type (unclass 99.1 1.5E-10 3.2E-15 104.6 4.9 129 38-176 7-170 (243)
316 COG2884 FtsE Predicted ATPase 99.1 3.9E-09 8.5E-14 94.8 13.6 120 58-179 17-170 (223)
317 TIGR00991 3a0901s02IAP34 GTP-b 99.1 2.3E-09 5.1E-14 104.5 13.4 147 35-246 18-168 (313)
318 PF05049 IIGP: Interferon-indu 99.0 4.9E-09 1.1E-13 104.8 15.7 176 68-315 34-220 (376)
319 PTZ00099 rab6; Provisional 99.0 1E-09 2.2E-14 99.6 9.5 117 164-316 27-145 (176)
320 KOG1143 Predicted translation 99.0 2.6E-09 5.5E-14 104.2 12.1 208 70-308 168-383 (591)
321 COG4525 TauB ABC-type taurine 99.0 3.2E-09 7E-14 95.7 11.7 146 59-206 21-192 (259)
322 COG3842 PotA ABC-type spermidi 99.0 7E-10 1.5E-14 110.0 8.1 118 59-178 21-168 (352)
323 PF00350 Dynamin_N: Dynamin fa 99.0 5.6E-09 1.2E-13 93.2 12.4 69 165-241 100-168 (168)
324 COG0050 TufB GTPases - transla 99.0 3.9E-09 8.4E-14 100.2 11.6 140 67-253 10-150 (394)
325 cd01900 YchF YchF subfamily. 99.0 1.1E-09 2.4E-14 105.8 7.9 102 72-209 1-104 (274)
326 PLN00023 GTP-binding protein; 99.0 4.2E-09 9E-14 103.4 11.5 29 67-95 19-47 (334)
327 PRK00771 signal recognition pa 99.0 1.2E-07 2.6E-12 97.5 22.4 154 67-246 93-247 (437)
328 COG1135 AbcC ABC-type metal io 99.0 6.5E-09 1.4E-13 99.9 11.9 117 58-176 21-170 (339)
329 COG4181 Predicted ABC-type tra 98.9 1.5E-08 3.3E-13 89.6 12.8 118 59-178 26-178 (228)
330 KOG0468 U5 snRNP-specific prot 98.9 2E-09 4.3E-14 111.4 8.2 138 67-245 126-263 (971)
331 COG0411 LivG ABC-type branched 98.9 2.8E-09 6E-14 99.4 8.3 128 38-175 7-177 (250)
332 COG1118 CysA ABC-type sulfate/ 98.9 1.1E-08 2.5E-13 98.1 12.4 146 59-206 18-197 (345)
333 KOG4252 GTP-binding protein [S 98.9 3.2E-09 6.8E-14 93.7 8.0 160 67-314 18-182 (246)
334 PRK10867 signal recognition pa 98.9 9.7E-08 2.1E-12 97.9 20.1 155 67-245 98-254 (433)
335 PF04548 AIG1: AIG1 family; I 98.9 2.3E-08 5E-13 93.5 13.9 132 71-252 2-137 (212)
336 PF00448 SRP54: SRP54-type pro 98.9 1.5E-08 3.3E-13 93.5 12.3 152 69-246 1-155 (196)
337 COG4555 NatA ABC-type Na+ tran 98.9 2.1E-09 4.6E-14 97.3 6.3 114 59-174 18-160 (245)
338 COG3839 MalK ABC-type sugar tr 98.9 1E-08 2.2E-13 101.3 11.2 116 59-176 19-162 (338)
339 COG4559 ABC-type hemin transpo 98.9 9.2E-09 2E-13 93.9 9.8 143 59-207 17-201 (259)
340 KOG1487 GTP-binding protein DR 98.9 2.4E-09 5.1E-14 100.0 5.7 162 69-314 59-282 (358)
341 TIGR00959 ffh signal recogniti 98.9 5.5E-07 1.2E-11 92.4 23.4 155 67-245 97-253 (428)
342 COG3638 ABC-type phosphate/pho 98.9 1.1E-08 2.5E-13 94.8 9.9 117 57-175 18-175 (258)
343 PRK11889 flhF flagellar biosyn 98.9 4.1E-08 8.9E-13 98.4 14.4 153 68-246 240-392 (436)
344 KOG0070 GTP-binding ADP-ribosy 98.9 4.4E-09 9.6E-14 93.8 6.7 162 66-314 14-179 (181)
345 COG3840 ThiQ ABC-type thiamine 98.9 3.7E-08 8E-13 88.0 12.2 110 64-175 20-157 (231)
346 COG4175 ProV ABC-type proline/ 98.8 2.6E-08 5.7E-13 95.9 11.8 147 59-207 44-225 (386)
347 cd03115 SRP The signal recogni 98.8 1.3E-07 2.8E-12 85.3 15.3 152 71-247 2-155 (173)
348 PF00005 ABC_tran: ABC transpo 98.8 5E-09 1.1E-13 90.4 5.7 110 65-174 7-135 (137)
349 cd03294 ABC_Pro_Gly_Bertaine T 98.8 5E-08 1.1E-12 94.5 13.0 129 37-175 26-188 (269)
350 cd03259 ABC_Carb_Solutes_like 98.8 5.3E-08 1.1E-12 90.8 12.5 115 59-175 16-158 (213)
351 KOG0465 Mitochondrial elongati 98.8 9E-09 1.9E-13 106.0 7.7 135 67-247 37-172 (721)
352 TIGR01188 drrA daunorubicin re 98.8 4.7E-08 1E-12 96.3 12.1 114 59-174 9-151 (302)
353 cd03214 ABC_Iron-Siderophores_ 98.8 5.3E-08 1.1E-12 88.5 11.6 109 59-174 15-124 (180)
354 cd03293 ABC_NrtD_SsuB_transpor 98.8 6.3E-08 1.4E-12 90.8 12.4 115 59-175 20-159 (220)
355 TIGR02315 ABC_phnC phosphonate 98.8 3.8E-08 8.2E-13 93.6 10.9 115 59-175 18-173 (243)
356 COG1124 DppF ABC-type dipeptid 98.8 1.8E-08 3.8E-13 94.1 8.3 116 58-175 22-169 (252)
357 cd03261 ABC_Org_Solvent_Resist 98.8 7.4E-08 1.6E-12 91.2 12.8 115 59-175 16-164 (235)
358 cd03226 ABC_cobalt_CbiO_domain 98.8 7.5E-08 1.6E-12 89.2 12.5 115 59-175 16-154 (205)
359 PRK13537 nodulation ABC transp 98.8 2.3E-08 5E-13 98.7 9.5 115 59-175 23-166 (306)
360 TIGR03415 ABC_choXWV_ATP choli 98.8 6.8E-08 1.5E-12 97.9 13.0 130 35-174 24-191 (382)
361 COG5192 BMS1 GTP-binding prote 98.8 1.2E-07 2.7E-12 96.7 14.6 146 63-297 63-210 (1077)
362 cd03265 ABC_DrrA DrrA is the A 98.8 8.1E-08 1.7E-12 90.1 12.6 115 59-175 16-159 (220)
363 COG0410 LivF ABC-type branched 98.8 3.9E-08 8.4E-13 91.1 10.0 116 59-176 19-165 (237)
364 KOG0467 Translation elongation 98.8 4.7E-08 1E-12 102.9 11.8 130 67-244 7-137 (887)
365 PRK09536 btuD corrinoid ABC tr 98.8 2E-08 4.4E-13 102.4 9.0 115 59-175 19-167 (402)
366 cd03235 ABC_Metallic_Cations A 98.8 3.8E-08 8.2E-13 91.8 10.1 115 59-175 15-160 (213)
367 KOG0463 GTP-binding protein GP 98.8 6.3E-09 1.4E-13 101.5 5.0 210 69-308 133-353 (641)
368 TIGR02211 LolD_lipo_ex lipopro 98.8 7.7E-08 1.7E-12 90.2 12.3 114 59-174 21-168 (221)
369 PRK10070 glycine betaine trans 98.8 6.9E-08 1.5E-12 98.4 12.8 115 59-175 44-192 (400)
370 TIGR02314 ABC_MetN D-methionin 98.8 6.7E-08 1.5E-12 96.7 12.5 115 59-175 21-168 (343)
371 PRK11248 tauB taurine transpor 98.8 7.2E-08 1.6E-12 92.7 12.3 115 59-175 17-156 (255)
372 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.8 7E-08 1.5E-12 90.2 11.8 115 59-175 20-168 (218)
373 PRK12726 flagellar biosynthesi 98.8 1.9E-07 4E-12 93.4 15.3 153 66-246 203-357 (407)
374 PRK13637 cbiO cobalt transport 98.8 7.8E-08 1.7E-12 94.1 12.5 117 59-175 23-172 (287)
375 TIGR00960 3a0501s02 Type II (G 98.8 7.7E-08 1.7E-12 89.9 12.0 115 59-175 19-166 (216)
376 COG4674 Uncharacterized ABC-ty 98.8 7.9E-09 1.7E-13 93.2 5.0 118 59-178 21-180 (249)
377 cd03301 ABC_MalK_N The N-termi 98.8 7.7E-08 1.7E-12 89.6 11.9 114 59-174 16-157 (213)
378 PRK13536 nodulation factor exp 98.8 3.1E-08 6.7E-13 99.1 9.5 115 59-175 57-200 (340)
379 PRK11629 lolD lipoprotein tran 98.8 9.6E-08 2.1E-12 90.4 12.3 115 59-175 25-173 (233)
380 KOG0072 GTP-binding ADP-ribosy 98.7 1.1E-07 2.5E-12 81.2 11.2 119 164-314 60-180 (182)
381 TIGR01186 proV glycine betaine 98.7 7.4E-08 1.6E-12 97.1 12.0 119 59-179 9-162 (363)
382 cd03256 ABC_PhnC_transporter A 98.7 1.3E-07 2.7E-12 89.9 13.0 114 59-174 17-171 (241)
383 KOG2486 Predicted GTPase [Gene 98.7 2E-08 4.3E-13 95.0 7.2 172 66-309 133-312 (320)
384 cd03263 ABC_subfamily_A The AB 98.7 9.4E-08 2E-12 89.5 11.9 114 59-174 18-160 (220)
385 PRK11247 ssuB aliphatic sulfon 98.7 9E-08 2E-12 92.1 12.0 115 59-175 28-161 (257)
386 cd03258 ABC_MetN_methionine_tr 98.7 6.8E-08 1.5E-12 91.3 11.0 115 59-175 21-168 (233)
387 cd03237 ABC_RNaseL_inhibitor_d 98.7 1.3E-07 2.7E-12 90.5 12.9 106 66-175 22-143 (246)
388 COG0541 Ffh Signal recognition 98.7 7.3E-07 1.6E-11 89.6 18.6 157 66-247 97-255 (451)
389 COG4598 HisP ABC-type histidin 98.7 7.9E-08 1.7E-12 85.7 10.4 132 35-176 6-181 (256)
390 TIGR03864 PQQ_ABC_ATP ABC tran 98.7 1.3E-07 2.8E-12 89.6 12.7 115 59-175 17-160 (236)
391 TIGR02868 CydC thiol reductant 98.7 6.8E-08 1.5E-12 102.4 11.8 119 58-176 350-499 (529)
392 PF04670 Gtr1_RagA: Gtr1/RagA 98.7 1.6E-07 3.6E-12 88.6 13.0 172 71-312 1-175 (232)
393 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.7 1.5E-07 3.3E-12 88.6 12.8 115 59-175 38-170 (224)
394 PRK11153 metN DL-methionine tr 98.7 1E-07 2.3E-12 95.5 12.2 115 59-175 21-168 (343)
395 PRK11650 ugpC glycerol-3-phosp 98.7 9.6E-08 2.1E-12 96.2 11.9 114 59-174 20-161 (356)
396 COG1119 ModF ABC-type molybden 98.7 6.2E-08 1.3E-12 90.5 9.6 110 59-174 47-198 (257)
397 cd03222 ABC_RNaseL_inhibitor T 98.7 9.6E-08 2.1E-12 86.7 10.6 79 65-175 21-99 (177)
398 cd03231 ABC_CcmA_heme_exporter 98.7 6.1E-08 1.3E-12 89.7 9.6 115 59-175 16-153 (201)
399 TIGR00993 3a0901s04IAP86 chlor 98.7 8.5E-08 1.8E-12 101.0 11.6 128 69-246 118-251 (763)
400 cd03219 ABC_Mj1267_LivG_branch 98.7 1.8E-07 3.9E-12 88.5 13.0 115 59-175 16-171 (236)
401 cd03298 ABC_ThiQ_thiamine_tran 98.7 1.6E-07 3.5E-12 87.4 12.3 113 61-175 16-156 (211)
402 cd03225 ABC_cobalt_CbiO_domain 98.7 1.4E-07 3.1E-12 87.7 12.0 115 59-175 17-162 (211)
403 cd03296 ABC_CysA_sulfate_impor 98.7 1.4E-07 3.1E-12 89.6 12.1 114 59-174 18-163 (239)
404 TIGR01166 cbiO cobalt transpor 98.7 2.1E-07 4.6E-12 85.2 12.7 115 59-175 8-155 (190)
405 PRK11000 maltose/maltodextrin 98.7 1.3E-07 2.8E-12 95.8 12.3 115 59-175 19-161 (369)
406 TIGR03265 PhnT2 putative 2-ami 98.7 1.4E-07 3E-12 94.9 12.5 115 59-175 20-162 (353)
407 cd03295 ABC_OpuCA_Osmoprotecti 98.7 1.7E-07 3.6E-12 89.2 12.4 116 59-174 17-162 (242)
408 cd03297 ABC_ModC_molybdenum_tr 98.7 1.9E-07 4.2E-12 87.1 12.5 111 61-174 16-158 (214)
409 COG0552 FtsY Signal recognitio 98.7 5.3E-07 1.2E-11 88.0 15.6 157 66-246 136-299 (340)
410 TIGR03522 GldA_ABC_ATP gliding 98.7 6.5E-08 1.4E-12 95.2 9.6 114 59-174 18-160 (301)
411 cd03238 ABC_UvrA The excision 98.7 8.9E-08 1.9E-12 86.8 9.6 105 59-175 11-117 (176)
412 cd03218 ABC_YhbG The ABC trans 98.7 9.4E-08 2E-12 90.3 10.2 114 59-174 16-160 (232)
413 KOG1954 Endocytosis/signaling 98.7 1.2E-06 2.6E-11 85.8 17.8 160 68-252 57-232 (532)
414 TIGR01288 nodI ATP-binding ABC 98.7 7.2E-08 1.6E-12 95.0 9.7 114 59-174 20-162 (303)
415 TIGR02673 FtsE cell division A 98.7 8E-08 1.7E-12 89.6 9.5 115 59-175 18-165 (214)
416 KOG1491 Predicted GTP-binding 98.7 3.5E-07 7.6E-12 88.8 13.9 106 68-209 19-126 (391)
417 TIGR01184 ntrCD nitrate transp 98.7 2.6E-07 5.5E-12 87.4 12.9 111 63-175 5-142 (230)
418 PRK12727 flagellar biosynthesi 98.7 3.3E-07 7.1E-12 95.2 14.4 150 67-246 348-499 (559)
419 PRK10584 putative ABC transpor 98.7 2.2E-07 4.9E-12 87.5 12.2 115 59-175 26-174 (228)
420 cd03268 ABC_BcrA_bacitracin_re 98.7 1.9E-07 4.1E-12 86.7 11.6 115 59-175 16-154 (208)
421 PRK10851 sulfate/thiosulfate t 98.7 1.5E-07 3.2E-12 94.8 11.5 114 59-174 18-163 (353)
422 PRK14722 flhF flagellar biosyn 98.7 2.8E-07 6.1E-12 92.7 13.4 156 66-246 134-296 (374)
423 PRK13635 cbiO cobalt transport 98.7 2.1E-07 4.5E-12 90.7 12.2 114 59-174 23-167 (279)
424 TIGR03258 PhnT 2-aminoethylpho 98.7 2.1E-07 4.6E-12 93.9 12.5 114 59-174 21-164 (362)
425 PRK13652 cbiO cobalt transport 98.7 2.4E-07 5.2E-12 90.1 12.5 114 59-174 20-164 (277)
426 cd03266 ABC_NatA_sodium_export 98.7 2.1E-07 4.5E-12 87.0 11.6 114 59-174 21-163 (218)
427 PRK11432 fbpC ferric transport 98.7 2.1E-07 4.6E-12 93.5 12.4 115 59-175 22-164 (351)
428 cd03264 ABC_drug_resistance_li 98.7 9.4E-08 2E-12 89.0 9.2 113 59-174 16-157 (211)
429 PRK13538 cytochrome c biogenes 98.7 9E-08 2E-12 88.7 9.0 114 59-174 17-156 (204)
430 cd03262 ABC_HisP_GlnQ_permease 98.7 1.1E-07 2.3E-12 88.6 9.5 115 59-175 16-163 (213)
431 cd03269 ABC_putative_ATPase Th 98.7 8.7E-08 1.9E-12 89.1 8.9 115 59-175 16-156 (210)
432 PRK11144 modC molybdate transp 98.7 2.4E-07 5.1E-12 93.3 12.5 111 62-174 17-155 (352)
433 PRK13647 cbiO cobalt transport 98.7 1.6E-07 3.4E-12 91.3 10.8 115 59-175 21-166 (274)
434 cd03292 ABC_FtsE_transporter F 98.7 9.3E-08 2E-12 89.1 8.9 115 59-175 17-164 (214)
435 TIGR02142 modC_ABC molybdenum 98.6 2.4E-07 5.3E-12 93.3 12.4 111 62-174 16-158 (354)
436 cd03216 ABC_Carb_Monos_I This 98.6 5.8E-08 1.3E-12 86.9 7.1 95 59-175 16-110 (163)
437 COG4586 ABC-type uncharacteriz 98.6 2.1E-07 4.6E-12 88.1 11.0 117 58-176 39-185 (325)
438 PRK10247 putative ABC transpor 98.6 1.6E-07 3.5E-12 88.5 10.3 115 59-174 23-164 (225)
439 PRK11831 putative ABC transpor 98.6 3E-07 6.4E-12 89.1 12.4 115 59-175 23-171 (269)
440 TIGR01189 ccmA heme ABC export 98.6 1.1E-07 2.3E-12 87.8 8.8 115 59-175 16-155 (198)
441 cd03254 ABCC_Glucan_exporter_l 98.6 3E-07 6.4E-12 86.6 12.0 117 59-175 19-167 (229)
442 TIGR03608 L_ocin_972_ABC putat 98.6 3.1E-07 6.7E-12 85.0 11.9 115 59-175 14-162 (206)
443 PRK09452 potA putrescine/sperm 98.6 2.6E-07 5.6E-12 93.6 12.2 115 59-175 30-172 (375)
444 cd01858 NGP_1 NGP-1. Autoanti 98.6 3.1E-08 6.8E-13 87.9 4.9 28 68-95 101-128 (157)
445 PRK11124 artP arginine transpo 98.6 1.3E-07 2.9E-12 89.9 9.6 115 59-175 18-169 (242)
446 PRK13634 cbiO cobalt transport 98.6 2.8E-07 6E-12 90.3 12.1 115 59-174 23-172 (290)
447 PRK13650 cbiO cobalt transport 98.6 2.6E-07 5.6E-12 90.0 11.8 115 59-175 23-168 (279)
448 PRK10938 putative molybdenum t 98.6 2.8E-07 6.2E-12 96.8 12.9 115 59-175 19-163 (490)
449 COG1122 CbiO ABC-type cobalt t 98.6 2.2E-07 4.8E-12 88.0 10.8 116 59-176 20-167 (235)
450 PRK14250 phosphate ABC transpo 98.6 3.4E-07 7.4E-12 87.2 12.2 115 59-174 19-158 (241)
451 PRK10771 thiQ thiamine transpo 98.6 3E-07 6.5E-12 86.9 11.8 112 61-174 17-156 (232)
452 cd03267 ABC_NatA_like Similar 98.6 4.1E-07 8.8E-12 86.4 12.7 115 59-175 37-181 (236)
453 TIGR03411 urea_trans_UrtD urea 98.6 1.6E-07 3.4E-12 89.3 9.9 115 59-175 18-171 (242)
454 COG4988 CydD ABC-type transpor 98.6 2.2E-07 4.8E-12 96.3 11.6 131 45-175 323-484 (559)
455 TIGR03771 anch_rpt_ABC anchore 98.6 2.4E-07 5.1E-12 87.2 11.0 106 67-174 4-140 (223)
456 PRK13636 cbiO cobalt transport 98.6 3E-07 6.4E-12 89.8 11.9 114 59-174 22-168 (283)
457 PRK11607 potG putrescine trans 98.6 2.8E-07 6E-12 93.5 12.1 114 59-174 35-176 (377)
458 PRK10908 cell division protein 98.6 1.5E-07 3.3E-12 88.3 9.5 115 59-175 18-165 (222)
459 TIGR02323 CP_lyasePhnK phospho 98.6 4.2E-07 9.2E-12 87.0 12.7 115 59-174 19-175 (253)
460 cd03369 ABCC_NFT1 Domain 2 of 98.6 3.6E-07 7.8E-12 84.8 11.7 110 59-174 24-152 (207)
461 PRK13540 cytochrome c biogenes 98.6 5.1E-07 1.1E-11 83.4 12.7 115 59-175 17-155 (200)
462 PRK13539 cytochrome c biogenes 98.6 3.4E-07 7.4E-12 85.1 11.6 115 59-175 18-155 (207)
463 PRK13632 cbiO cobalt transport 98.6 3.7E-07 8.1E-12 88.5 12.2 115 59-175 25-170 (271)
464 TIGR03005 ectoine_ehuA ectoine 98.6 3.8E-07 8.3E-12 87.3 12.1 114 59-174 16-173 (252)
465 cd03257 ABC_NikE_OppD_transpor 98.6 6.5E-07 1.4E-11 84.1 13.5 116 59-175 21-173 (228)
466 PRK09544 znuC high-affinity zi 98.6 3.6E-07 7.9E-12 87.6 11.9 115 59-175 20-148 (251)
467 COG0488 Uup ATPase components 98.6 2.5E-07 5.5E-12 97.2 11.6 116 59-178 19-185 (530)
468 PRK11300 livG leucine/isoleuci 98.6 4.2E-07 9.2E-12 87.1 12.3 114 59-174 21-180 (255)
469 cd01858 NGP_1 NGP-1. Autoanti 98.6 2.4E-07 5.1E-12 82.2 9.8 85 196-311 7-93 (157)
470 KOG0074 GTP-binding ADP-ribosy 98.6 4.8E-08 1E-12 83.2 4.9 161 67-310 15-176 (185)
471 KOG0781 Signal recognition par 98.6 3.3E-07 7.3E-12 92.3 11.7 163 66-247 375-546 (587)
472 PRK10418 nikD nickel transport 98.6 5.8E-07 1.3E-11 86.2 13.1 117 59-175 19-168 (254)
473 TIGR00092 GTP-binding protein 98.6 1.4E-07 3E-12 94.4 9.0 105 70-209 3-109 (368)
474 COG1101 PhnK ABC-type uncharac 98.6 1.8E-07 3.9E-12 85.8 8.8 114 60-173 23-174 (263)
475 PRK09493 glnQ glutamine ABC tr 98.6 1.8E-07 3.8E-12 88.9 9.3 114 59-174 17-163 (240)
476 PRK10575 iron-hydroxamate tran 98.6 4.3E-07 9.3E-12 87.7 12.1 115 59-175 27-175 (265)
477 cd03223 ABCD_peroxisomal_ALDP 98.6 1.7E-07 3.7E-12 84.1 8.7 100 59-175 17-119 (166)
478 PRK13543 cytochrome c biogenes 98.6 6.3E-07 1.4E-11 83.7 12.8 115 59-175 27-165 (214)
479 PRK13645 cbiO cobalt transport 98.6 4.2E-07 9E-12 89.0 12.1 116 59-175 27-178 (289)
480 PRK13638 cbiO cobalt transport 98.6 4.3E-07 9.2E-12 88.0 12.0 114 59-174 17-163 (271)
481 PRK10253 iron-enterobactin tra 98.6 4.6E-07 1E-11 87.5 12.2 115 59-175 23-171 (265)
482 COG4107 PhnK ABC-type phosphon 98.6 1.3E-06 2.9E-11 77.6 13.9 128 38-174 9-178 (258)
483 cd04178 Nucleostemin_like Nucl 98.6 5.3E-08 1.1E-12 88.0 5.2 28 68-95 116-143 (172)
484 PRK11264 putative amino-acid A 98.6 6.5E-07 1.4E-11 85.5 13.1 115 59-175 19-172 (250)
485 PRK13646 cbiO cobalt transport 98.6 4E-07 8.6E-12 89.0 11.8 114 59-174 23-172 (286)
486 KOG0466 Translation initiation 98.6 5.9E-08 1.3E-12 92.6 5.7 119 167-318 126-246 (466)
487 cd03229 ABC_Class3 This class 98.6 3.4E-07 7.4E-12 83.0 10.5 112 59-175 16-128 (178)
488 PRK14723 flhF flagellar biosyn 98.6 6.7E-07 1.4E-11 96.9 14.4 151 68-246 184-338 (767)
489 cd03233 ABC_PDR_domain1 The pl 98.6 4.4E-07 9.6E-12 84.1 11.5 108 59-175 23-146 (202)
490 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.6 1.2E-07 2.5E-12 83.2 7.1 82 60-175 17-98 (144)
491 PRK10790 putative multidrug tr 98.6 3.5E-07 7.6E-12 98.3 12.3 119 58-176 356-505 (592)
492 PRK12723 flagellar biosynthesi 98.6 2.1E-06 4.5E-11 87.1 17.1 148 68-246 173-327 (388)
493 PRK13648 cbiO cobalt transport 98.6 5.3E-07 1.1E-11 87.3 12.4 114 59-174 25-169 (269)
494 cd03224 ABC_TM1139_LivF_branch 98.6 5.1E-07 1.1E-11 84.6 11.9 114 59-174 16-159 (222)
495 KOG0460 Mitochondrial translat 98.6 1.8E-07 3.9E-12 90.6 8.9 142 64-253 49-192 (449)
496 PRK06731 flhF flagellar biosyn 98.6 1.1E-06 2.4E-11 84.8 14.5 151 68-246 74-226 (270)
497 PRK15112 antimicrobial peptide 98.6 4.6E-07 1E-11 87.6 11.9 116 59-175 29-177 (267)
498 cd01859 MJ1464 MJ1464. This f 98.6 4E-07 8.6E-12 80.5 10.5 86 197-314 12-97 (156)
499 PRK13541 cytochrome c biogenes 98.6 2.7E-07 5.9E-12 84.9 9.8 112 62-175 19-151 (195)
500 COG1419 FlhF Flagellar GTP-bin 98.6 4.8E-07 1E-11 90.6 12.1 150 67-245 201-352 (407)
No 1
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=100.00 E-value=6.3e-55 Score=403.35 Aligned_cols=299 Identities=64% Similarity=1.049 Sum_probs=284.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
.+++..|+++|..|||||||+.+|..+....+.+++++|+||+|.+.|+..|||||+.++|+++|++++|+|||||++++
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 55778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
++|.+.+++.+.++......++++||||||+++.|+|.+.|.++.+.+++.++.+++||||..+..++.+|+++++++|+
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhcc-ccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISS-DHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
++.+.++|+|+|+||+|+.+...+.+|+.+++.|+.++.+ ..+|++.+.+++++.+++||...+.|.||+.+|.|+++|
T Consensus 176 ilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf 255 (366)
T KOG1532|consen 176 ILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDF 255 (366)
T ss_pred HHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHH
Confidence 9999999999999999999999999999999999999986 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhccccC-ceeeeccccc
Q 014354 305 FKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKG-DTVVLNTGLK 364 (426)
Q Consensus 305 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~~~~-~~~~~~~~~~ 364 (426)
+.++.+.+.++...|.+.....+..+...++..+++-++++.+++.-+.. ..+...++.+
T Consensus 256 ~~av~~~vdEy~~~ykp~~Ek~k~~k~~~ee~~k~k~le~l~kdm~~~~~~~d~~~~~~~~ 316 (366)
T KOG1532|consen 256 FTAVDESVDEYEEEYKPEYEKKKAEKRLAEEERKKKQLEKLMKDMHVSPLKNDVPLATGDS 316 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHhccCcccccCCCCCCCCcH
Confidence 99999999999999999999999999999999999999999999977666 3344444433
No 2
>COG1159 Era GTPase [General function prediction only]
Probab=100.00 E-value=2e-37 Score=293.31 Aligned_cols=215 Identities=24% Similarity=0.303 Sum_probs=184.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.++.+|+|+|.||||||||+|+|+|...+. ++..|+|| |+.+ .||.+.
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisI------------vS~k~QTT----R~~I--------------~GI~t~-- 51 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISI------------VSPKPQTT----RNRI--------------RGIVTT-- 51 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEe------------ecCCcchh----hhhe--------------eEEEEc--
Confidence 467899999999999999999999999875 89999999 8777 488875
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh--cCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~--~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
++.|++|+||||++++ .+.++..+.+.... ..+|+++||||+.+++...+ ..++
T Consensus 52 -----------------~~~QiIfvDTPGih~p--k~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d-----~~il 107 (298)
T COG1159 52 -----------------DNAQIIFVDTPGIHKP--KHALGELMNKAARSALKDVDLILFVVDADEGWGPGD-----EFIL 107 (298)
T ss_pred -----------------CCceEEEEeCCCCCCc--chHHHHHHHHHHHHHhccCcEEEEEEeccccCCccH-----HHHH
Confidence 5689999999999997 67788888777765 45899999999999888765 3456
Q ss_pred HHHhhccCCeEEEEecCCCCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 225 SILYKTRLPLVLAFNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
..++..+.|+|+++||+|.+.+.. +..+.+.+. ...+|..+||+||++|.|++.
T Consensus 108 ~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~-------------------------~~~~f~~ivpiSA~~g~n~~~ 162 (298)
T COG1159 108 EQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLK-------------------------KLLPFKEIVPISALKGDNVDT 162 (298)
T ss_pred HHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHH-------------------------hhCCcceEEEeeccccCCHHH
Confidence 666677789999999999999876 333333222 234667899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeeccc
Q 014354 304 YFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNTG 362 (426)
Q Consensus 304 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~~~~~~~~~~~~ 362 (426)
|.+.+...+|+++|+||.+..++.+++|++.|++||+++..+++|+||+....+-.+..
T Consensus 163 L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~ 221 (298)
T COG1159 163 LLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEE 221 (298)
T ss_pred HHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999998887776653
No 3
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=100.00 E-value=4.1e-33 Score=264.05 Aligned_cols=235 Identities=38% Similarity=0.624 Sum_probs=181.9
Q ss_pred EEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccccHH
Q 014354 74 VVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFD 153 (426)
Q Consensus 74 iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~ 153 (426)
|+|++||||||+++.+.......++.++++|+||++...||...+|+|+.+.++++|++++++|||+++.+++++...++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~d 80 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENID 80 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC
Q 014354 154 EVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP 233 (426)
Q Consensus 154 ~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P 233 (426)
|+....... . .+|+|+|||||.+.++++.....+.+.+.....-++|+++|+....++..|.+..+.++..+.+.+.|
T Consensus 81 ~l~~~i~~~-~-~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP 158 (238)
T PF03029_consen 81 WLDEEIEKY-E-DDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELP 158 (238)
T ss_dssp HHHHHHHHH-H--SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHhhc-C-CcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCC
Confidence 998888765 2 49999999999999999999888888887655679999999998888999999999999989999999
Q ss_pred eEEEEecCCCCC--hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354 234 LVLAFNKTDVAQ--HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (426)
Q Consensus 234 ~IlVlNKiDl~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~ 311 (426)
.|.|+||+|+.+ .....+|..+...+...+... ...+.++++.++++++...+++++|+.+++|+.+|+..+.+.
T Consensus 159 ~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~---~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 159 HVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESD---YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp EEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT----HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred EEEeeeccCcccchhHHHHHHhcChHHHHHHHHHH---HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 999999999999 455567777777666655433 678888999998887665599999999999999999998876
Q ss_pred HH
Q 014354 312 AQ 313 (426)
Q Consensus 312 ~~ 313 (426)
..
T Consensus 236 ~~ 237 (238)
T PF03029_consen 236 NQ 237 (238)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 4
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.97 E-value=2.1e-31 Score=257.84 Aligned_cols=210 Identities=18% Similarity=0.217 Sum_probs=159.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+|+|+||||||||+|+|++...+. ++..|++| ++.+ .|+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~------------vs~~~~TT----r~~i--------------~~i~~------- 44 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI------------TSPKAQTT----RNRI--------------SGIHT------- 44 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee------------cCCCCCcc----cCcE--------------EEEEE-------
Confidence 68999999999999999999987542 67777777 3322 13332
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh--cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~--~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~ 228 (426)
..+.+++||||||+.+.. ..+...+.+.... ..+|++++|+|+........ .++..+.
T Consensus 45 ------------~~~~qii~vDTPG~~~~~--~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~------~i~~~l~ 104 (270)
T TIGR00436 45 ------------TGASQIIFIDTPGFHEKK--HSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGE------FVLTKLQ 104 (270)
T ss_pred ------------cCCcEEEEEECcCCCCCc--chHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHH------HHHHHHH
Confidence 234689999999997752 2233333332222 45899999999987544321 2334455
Q ss_pred hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l 308 (426)
..++|+++|+||+|+..+.........+. ..+.+.+++++||++|.|+++|+++|
T Consensus 105 ~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-------------------------~~~~~~~v~~iSA~~g~gi~~L~~~l 159 (270)
T TIGR00436 105 NLKRPVVLTRNKLDNKFKDKLLPLIDKYA-------------------------ILEDFKDIVPISALTGDNTSFLAAFI 159 (270)
T ss_pred hcCCCEEEEEECeeCCCHHHHHHHHHHHH-------------------------hhcCCCceEEEecCCCCCHHHHHHHH
Confidence 67899999999999986553322221111 12344579999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeeccc
Q 014354 309 EESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNTG 362 (426)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~~~~~~~~~~~~ 362 (426)
.+.+++.+|+||.+..++.+.+|.+.|++||++|+++++|+||+....+..|..
T Consensus 160 ~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~ 213 (270)
T TIGR00436 160 EVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSF 213 (270)
T ss_pred HHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999888763
No 5
>PRK15494 era GTPase Era; Provisional
Probab=99.97 E-value=1.8e-30 Score=258.75 Aligned_cols=214 Identities=19% Similarity=0.190 Sum_probs=158.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
++..+|+|+|.||||||||+|+|++..++. ++..+++| ++.+ .+++.
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i------------vs~k~~tT----r~~~--------------~~~~~--- 96 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI------------VTPKVQTT----RSII--------------TGIIT--- 96 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceee------------ccCCCCCc----cCcE--------------EEEEE---
Confidence 355699999999999999999999886532 45555555 2211 12222
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHH-H-hcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF-A-STFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~-~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
..+.+++||||||+.+++ ..+...+.+.. . ...+|++|+|+|+..++.... ..++
T Consensus 97 ----------------~~~~qi~~~DTpG~~~~~--~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~-----~~il 153 (339)
T PRK15494 97 ----------------LKDTQVILYDTPGIFEPK--GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDIT-----HNIL 153 (339)
T ss_pred ----------------eCCeEEEEEECCCcCCCc--ccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHH-----HHHH
Confidence 245689999999997652 22333333322 1 245899999999987765543 1233
Q ss_pred HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
..+...+.|.|+|+||+|+.... .....+.+. ....+..++++||++|.|++++
T Consensus 154 ~~l~~~~~p~IlViNKiDl~~~~-~~~~~~~l~-------------------------~~~~~~~i~~iSAktg~gv~eL 207 (339)
T PRK15494 154 DKLRSLNIVPIFLLNKIDIESKY-LNDIKAFLT-------------------------ENHPDSLLFPISALSGKNIDGL 207 (339)
T ss_pred HHHHhcCCCEEEEEEhhcCcccc-HHHHHHHHH-------------------------hcCCCcEEEEEeccCccCHHHH
Confidence 44555678999999999986531 111111111 1223467999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeeccc
Q 014354 305 FKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNTG 362 (426)
Q Consensus 305 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~~~~~~~~~~~~ 362 (426)
+++|...+++++|+||.+..|+++.+|++.|++||++|+++++|+||+....+..|..
T Consensus 208 ~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~ 265 (339)
T PRK15494 208 LEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWED 265 (339)
T ss_pred HHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999988873
No 6
>PRK00089 era GTPase Era; Reviewed
Probab=99.97 E-value=7.1e-30 Score=249.88 Aligned_cols=214 Identities=23% Similarity=0.298 Sum_probs=161.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|+||||||||+|+|++...+. ++..|+++ +..+ .++++
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~------------vs~~~~tt----~~~i--------------~~i~~---- 49 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISI------------VSPKPQTT----RHRI--------------RGIVT---- 49 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceee------------cCCCCCcc----cccE--------------EEEEE----
Confidence 56789999999999999999999886542 45556555 2221 12332
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH--hcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~--~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
..+.+++||||||+.++. ..++..+..... ...+|++++|+|+...+.... ..++.
T Consensus 50 ---------------~~~~qi~~iDTPG~~~~~--~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~-----~~i~~ 107 (292)
T PRK00089 50 ---------------EDDAQIIFVDTPGIHKPK--RALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGD-----EFILE 107 (292)
T ss_pred ---------------cCCceEEEEECCCCCCch--hHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhH-----HHHHH
Confidence 134789999999997752 333333333322 245899999999988554332 23344
Q ss_pred HHhhccCCeEEEEecCCCCC-hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQ-HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
.+...+.|+++|+||+|+.. ..........+. ..+++.+++++||++|.|+.+|
T Consensus 108 ~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~-------------------------~~~~~~~i~~iSA~~~~gv~~L 162 (292)
T PRK00089 108 KLKKVKTPVILVLNKIDLVKDKEELLPLLEELS-------------------------ELMDFAEIVPISALKGDNVDEL 162 (292)
T ss_pred HHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHH-------------------------hhCCCCeEEEecCCCCCCHHHH
Confidence 45556789999999999984 343333322221 1234678999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeeccc
Q 014354 305 FKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNTG 362 (426)
Q Consensus 305 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~~~~~~~~~~~~ 362 (426)
+++|...+++.+|+||.+..++.+.++++.|++||++|.++++|+||+....+..|..
T Consensus 163 ~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~ 220 (292)
T PRK00089 163 LDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFEE 220 (292)
T ss_pred HHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999888863
No 7
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.96 E-value=1.6e-29 Score=238.16 Aligned_cols=242 Identities=18% Similarity=0.218 Sum_probs=173.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..+...|+|+|+||+|||||.|.++|..++ +++.++.|| |..+ .|++|+
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~------------~vS~K~~TT----r~~i--------------lgi~ts- 117 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVS------------AVSRKVHTT----RHRI--------------LGIITS- 117 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccc------------cccccccce----eeee--------------eEEEec-
Confidence 456789999999999999999999999977 388888888 5544 588885
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh--chHHH-HHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS--ASGAI-ITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNML 221 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~--~~~~~-l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l 221 (426)
++.|++|+||||+......+ .+... +.....+ ..+|++++|+|+...-.+ ++..
T Consensus 118 ------------------~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~---l~p~- 175 (379)
T KOG1423|consen 118 ------------------GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTP---LHPR- 175 (379)
T ss_pred ------------------CceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCc---cChH-
Confidence 67999999999998863211 11121 2222222 458999999999842111 1110
Q ss_pred HHHHHH-hhccCCeEEEEecCCCCChHhH-HHHHHHHHHHHHHhccccchhhhHHHHhhhh--------HhhhhcCCceE
Q 014354 222 YACSIL-YKTRLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLA--------LDEFYKNLKSV 291 (426)
Q Consensus 222 ~~~~~l-~~~~~P~IlVlNKiDl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------l~~~~~~~~vv 291 (426)
.++.+ .-.++|.|+|+||+|..+...+ ......+. +..+.. ...++.++.... ...|..|.++|
T Consensus 176 -vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt--~g~l~~---~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF 249 (379)
T KOG1423|consen 176 -VLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLT--NGELAK---LKLEVQEKFTDVPSDEKWRTICGWSHFERVF 249 (379)
T ss_pred -HHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhcc--ccccch---hhhhHHHHhccCCcccccccccCcccceeEE
Confidence 11112 2457899999999999987643 22222111 000000 000111111110 11244567899
Q ss_pred EeecccCCCHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeecccccch
Q 014354 292 GVSSVSGAGIEAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNTGLKDR 366 (426)
Q Consensus 292 ~vSA~~g~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~~~~~~~~~~~~~~~~ 366 (426)
+|||++|+||.++.++|...++.++|.||.+..+....++++.+++|+++|+++++|+||..+..+.+|.-..++
T Consensus 250 ~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd~~pqEVPY~lq~~i~~w~e~~~g 324 (379)
T KOG1423|consen 250 MVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLDHLPQEVPYNLQVRILSWKERPAG 324 (379)
T ss_pred EEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHHHHHhhCccccCcceEEEEEEeeecCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999866543
No 8
>PRK13768 GTPase; Provisional
Probab=99.94 E-value=2.9e-25 Score=212.78 Aligned_cols=242 Identities=33% Similarity=0.557 Sum_probs=192.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+++++|++|+||||++..+.......+.++.+++.||+....|+...+++++.+...++|...+++||+..+.+..++.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~~~ 82 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLLL 82 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHHHH
Confidence 57899999999999999999998888889999999999999889888888999999999999999999999887776677
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~ 229 (426)
....++...+.. .+.+++||||||+.+++.++..+..+.+.+....++++++|+|+.....+.++....+..+....+
T Consensus 83 ~~~~~l~~~l~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~ 160 (253)
T PRK13768 83 TKADEIKEEIES--LDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR 160 (253)
T ss_pred HHHHHHHHHHHh--cCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH
Confidence 778887777764 346999999999999877777777777777654489999999998877776655443333333336
Q ss_pred ccCCeEEEEecCCCCChHhHHH---HHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 230 TRLPLVLAFNKTDVAQHEFALE---WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 230 ~~~P~IlVlNKiDl~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
.++|+|+|+||+|+.+...... +......+...+.....+...+.++++..+..+..+.+++++||++++|+++|++
T Consensus 161 ~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~ 240 (253)
T PRK13768 161 LGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYA 240 (253)
T ss_pred cCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHH
Confidence 7899999999999998754433 3333333444444433444677778887777776667899999999999999999
Q ss_pred HHHHHHH
Q 014354 307 AVEESAQ 313 (426)
Q Consensus 307 ~l~~~~~ 313 (426)
+|.+.++
T Consensus 241 ~I~~~l~ 247 (253)
T PRK13768 241 AIQEVFC 247 (253)
T ss_pred HHHHHcC
Confidence 9988764
No 9
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=5.8e-24 Score=214.99 Aligned_cols=196 Identities=19% Similarity=0.198 Sum_probs=134.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.-|+|+|+||||||||||+|++... .++.+|+|| +.. +-|++..
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~-------------~vs~~p~TT----~~p--------------~~Giv~~----- 203 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP-------------KVADYPFTT----LVP--------------NLGVVRV----- 203 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc-------------cccCCCCCc----cCc--------------EEEEEEe-----
Confidence 3799999999999999999998752 378889888 322 2354432
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~ 228 (426)
.....++|+||||+.+.... ..++..+.+.+ ..++++++|||+...... ........+...+.
T Consensus 204 -------------~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i--~radvlL~VVD~s~~~~~-d~~e~~~~l~~eL~ 267 (390)
T PRK12298 204 -------------DDERSFVVADIPGLIEGASEGAGLGIRFLKHL--ERCRVLLHLIDIAPIDGS-DPVENARIIINELE 267 (390)
T ss_pred -------------CCCcEEEEEeCCCccccccchhhHHHHHHHHH--HhCCEEEEEeccCccccc-ChHHHHHHHHHHHH
Confidence 11235999999999875321 12343344333 457999999998632111 11111111222222
Q ss_pred h-----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcC-CceEEeecccCCCHH
Q 014354 229 K-----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKN-LKSVGVSSVSGAGIE 302 (426)
Q Consensus 229 ~-----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~vv~vSA~~g~gv~ 302 (426)
. .++|.|||+||+|+.....+......+. ..+.+ .+++++||+++.|+.
T Consensus 268 ~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~-------------------------~~~~~~~~Vi~ISA~tg~GId 322 (390)
T PRK12298 268 KYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIV-------------------------EALGWEGPVYLISAASGLGVK 322 (390)
T ss_pred hhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHH-------------------------HHhCCCCCEEEEECCCCcCHH
Confidence 2 3689999999999986654322222211 11122 369999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHH
Q 014354 303 AYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENI 342 (426)
Q Consensus 303 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~ 342 (426)
+|+++|.+.+++.+++||.+..++.+.+|.+.|++||++.
T Consensus 323 eLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~~~ 362 (390)
T PRK12298 323 ELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLE 362 (390)
T ss_pred HHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999997653
No 10
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=99.90 E-value=2.8e-23 Score=189.46 Aligned_cols=238 Identities=24% Similarity=0.408 Sum_probs=194.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
-.+|||||||||||..+.+..-....++.++++|.||+-...||...++|++.+.++++|++++++|||+..+++.+|..
T Consensus 4 gqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~ 83 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEA 83 (290)
T ss_pred ceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~ 229 (426)
+++|+...++. ....|+++|.|||.+.++++..-..+.+.+.. ...-++|-++|+.-..++..|.+..+..+.-|..
T Consensus 84 ~idwl~~~l~~--~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~ 161 (290)
T KOG1533|consen 84 NIDWLLEKLKP--LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH 161 (290)
T ss_pred hhHHHHHHhhh--ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh
Confidence 99999888875 34689999999999998877665555555543 4467889999998888899999999988888999
Q ss_pred ccCCeEEEEecCCCCChHhH----HHH---HHHHHHHHHHhccccc--hhhhHHHHhhhhHhhhhcCCceEEeecccCCC
Q 014354 230 TRLPLVLAFNKTDVAQHEFA----LEW---MQDFEVFQAAISSDHS--YTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300 (426)
Q Consensus 230 ~~~P~IlVlNKiDl~~~~~~----~~~---~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g 300 (426)
.+.|.|-|+.|+|+.+.... ... .+++..|...+..++. .++++...++.+++.| +-+.+.++..-..+.
T Consensus 162 melphVNvlSK~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~-~LVSF~~L~v~nkeS 240 (290)
T KOG1533|consen 162 MELPHVNVLSKADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDF-NLVSFEVLDVDNKES 240 (290)
T ss_pred hcccchhhhhHhHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhcc-CceeeEEeeccCHHH
Confidence 99999999999999876431 122 3344455555555543 4788888888888664 556677776666666
Q ss_pred HHHHHHHHHHH
Q 014354 301 IEAYFKAVEES 311 (426)
Q Consensus 301 v~~l~~~l~~~ 311 (426)
+-.|...|.++
T Consensus 241 ml~l~~~IDkA 251 (290)
T KOG1533|consen 241 MLRLQQTIDKA 251 (290)
T ss_pred HHHHHHHHHhc
Confidence 66666666543
No 11
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=99.90 E-value=3.3e-23 Score=186.11 Aligned_cols=243 Identities=26% Similarity=0.405 Sum_probs=196.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.-+.++|+.||||||+.+.|..+....|+...++|+||+.....+...+++|+.+.++++|+.+.++||||.+.++.++-
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl~ 83 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYLL 83 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHHH
Confidence 34689999999999999999999999999999999999998888888999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~ 228 (426)
..++|+-.-. ..-+-+|+++|.||+++.++|-..-..+.+.+.. .+.-+++|++|+.--.+...|.+..+.++..+.
T Consensus 84 ~NldwL~~~~--Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi 161 (273)
T KOG1534|consen 84 ENLDWLEEEI--GDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMI 161 (273)
T ss_pred HHHHHHHhhc--cCccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHH
Confidence 9999987622 2335699999999999999988888888888766 567899999999888888999999999999999
Q ss_pred hccCCeEEEEecCCCCChHhHHHHHHHHH----HHHHH--hccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFE----VFQAA--ISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~----~l~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~ 302 (426)
..++|.|-|+.|+|+.+.....++...+. .+... +......+..+++.++..+++ |+.+.++|+-....+.|.
T Consensus 162 ~lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d-~~Mv~FlPl~~~~eeSi~ 240 (273)
T KOG1534|consen 162 SLEVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDD-YSMVNFLPLDSSDEESIN 240 (273)
T ss_pred HhcCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhcc-ccceeeeecCCCCHHHHH
Confidence 99999999999999998743222211111 11110 000112466777777777655 466889999888888888
Q ss_pred HHHHHHHHHHHHH
Q 014354 303 AYFKAVEESAQEF 315 (426)
Q Consensus 303 ~l~~~l~~~~~~~ 315 (426)
.++..|..+.+.+
T Consensus 241 ~iL~~ID~aiQy~ 253 (273)
T KOG1534|consen 241 IILSYIDDAIQYG 253 (273)
T ss_pred HHHHHHHHHHHhc
Confidence 8877777666544
No 12
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.88 E-value=1.1e-22 Score=179.56 Aligned_cols=155 Identities=26% Similarity=0.335 Sum_probs=105.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
.|+++|.||+|||||+|+|+|.... ++++|++| .+.. .|.+.
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~-------------v~n~pG~T----v~~~--------------~g~~~------- 43 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQK-------------VGNWPGTT----VEKK--------------EGIFK------- 43 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEE-------------EEESTTSS----SEEE--------------EEEEE-------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCce-------------ecCCCCCC----eeee--------------eEEEE-------
Confidence 6899999999999999999999833 66777766 2111 23333
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhc
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT 230 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~ 230 (426)
..+.++.|+||||+..............+++....+|++++|+|+++. ..-++.+..+...
T Consensus 44 ------------~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l-------~r~l~l~~ql~e~ 104 (156)
T PF02421_consen 44 ------------LGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL-------ERNLYLTLQLLEL 104 (156)
T ss_dssp ------------ETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH-------HHHHHHHHHHHHT
T ss_pred ------------ecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH-------HHHHHHHHHHHHc
Confidence 134789999999998865444445555566666779999999999652 1224555667788
Q ss_pred cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354 231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (426)
Q Consensus 231 ~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l 308 (426)
++|+|+|+||+|........- +...|. +.. ++|+|++||++|.|+++|+++|
T Consensus 105 g~P~vvvlN~~D~a~~~g~~i---d~~~Ls----------------------~~L-g~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 105 GIPVVVVLNKMDEAERKGIEI---DAEKLS----------------------ERL-GVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp TSSEEEEEETHHHHHHTTEEE----HHHHH----------------------HHH-TS-EEEEBTTTTBTHHHHHHHH
T ss_pred CCCEEEEEeCHHHHHHcCCEE---CHHHHH----------------------HHh-CCCEEEEEeCCCcCHHHHHhhC
Confidence 999999999999776543211 111111 111 3689999999999999999875
No 13
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.86 E-value=1.3e-20 Score=185.95 Aligned_cols=235 Identities=18% Similarity=0.177 Sum_probs=156.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCC-----CC
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN-----GG 140 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~n-----g~ 140 (426)
..++.+|+|+|+||||||||+++|.......+.++.|+..||... ...+..+ .++++ |+.+...|+ .+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~-~~~gall--gd~~r----~~~~~~~~~~~~r~~~ 125 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST-RTGGSIL--GDKTR----MERLSRHPNAFIRPSP 125 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc-ccchhhh--chHhH----HHhhcCCCCeEEEecC
Confidence 346789999999999999999999999888889999999999643 2222222 23333 333433333 11
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhH
Q 014354 141 ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNM 220 (426)
Q Consensus 141 i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~ 220 (426)
-+|.+.-++....+.+.++. ..+++++||||+|+... ...+ ...+|++++|++...+.+-+...
T Consensus 126 ~~~~l~~~a~~~~~~~~~~~--~~g~d~viieT~Gv~qs------~~~i-----~~~aD~vlvv~~p~~gd~iq~~k--- 189 (332)
T PRK09435 126 SSGTLGGVARKTRETMLLCE--AAGYDVILVETVGVGQS------ETAV-----AGMVDFFLLLQLPGAGDELQGIK--- 189 (332)
T ss_pred CcccccchHHHHHHHHHHHh--ccCCCEEEEECCCCccc------hhHH-----HHhCCEEEEEecCCchHHHHHHH---
Confidence 13333223445555555554 45799999999999642 1111 23479999998744333222211
Q ss_pred HHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCC
Q 014354 221 LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGA 299 (426)
Q Consensus 221 l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~ 299 (426)
....+++.|+|+||+|+............+......+. ... ....+++++||++|.
T Consensus 190 ------~gi~E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~-----------------~~~~~w~~pVi~vSA~~g~ 246 (332)
T PRK09435 190 ------KGIMELADLIVINKADGDNKTAARRAAAEYRSALRLLR-----------------PKDPGWQPPVLTCSALEGE 246 (332)
T ss_pred ------hhhhhhhheEEeehhcccchhHHHHHHHHHHHHHhccc-----------------ccccCCCCCEEEEECCCCC
Confidence 11345667999999999976544334333332211100 000 112589999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhHHHhH---HHHHHHHHHHHHHHHHHHHHhhh
Q 014354 300 GIEAYFKAVEESAQEFMETYKADLDKR---RAEKQRLEEERQKENINKLRKDM 349 (426)
Q Consensus 300 gv~~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~re~~~~~l~~e~ 349 (426)
|+++|++.|.++.+ +.|+.+..+. .+.++++.+.+|+++++++.+..
T Consensus 247 GIdeL~~~I~~~~~---~l~~sg~l~~~r~~~~~~~v~elire~l~~~~~~~~ 296 (332)
T PRK09435 247 GIDEIWQAIEDHRA---ALTASGEFAARRREQQVDWMWEMVEEGLLDRLFADP 296 (332)
T ss_pred CHHHHHHHHHHHHH---HhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 99999999999887 6677777766 77899999999999999997655
No 14
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=4.8e-21 Score=191.38 Aligned_cols=160 Identities=26% Similarity=0.281 Sum_probs=120.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
++|+|+|.||+|||||+|+|++...+. |+.+|+.| ||++. +.+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AI------------V~D~pGvT----RDr~y--------------~~~~------ 47 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAI------------VSDTPGVT----RDRIY--------------GDAE------ 47 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeE------------eecCCCCc----cCCcc--------------ceeE------
Confidence 689999999999999999999998664 77778777 77762 1111
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH--hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~--~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
+.+..+.+|||+|+.... ...+...+.+... ...+|++|||||+..|+++.+ ..+...+
T Consensus 48 -------------~~~~~f~lIDTgGl~~~~-~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D-----~~ia~~L 108 (444)
T COG1160 48 -------------WLGREFILIDTGGLDDGD-EDELQELIREQALIAIEEADVILFVVDGREGITPAD-----EEIAKIL 108 (444)
T ss_pred -------------EcCceEEEEECCCCCcCC-chHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH-----HHHHHHH
Confidence 344679999999997642 1233343433322 245899999999999999987 4466677
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
+..++|+|+|+||+|-...+. ...++. .+++.+++++||.+|.|+.+|+++
T Consensus 109 r~~~kpviLvvNK~D~~~~e~---~~~efy--------------------------slG~g~~~~ISA~Hg~Gi~dLld~ 159 (444)
T COG1160 109 RRSKKPVILVVNKIDNLKAEE---LAYEFY--------------------------SLGFGEPVPISAEHGRGIGDLLDA 159 (444)
T ss_pred HhcCCCEEEEEEcccCchhhh---hHHHHH--------------------------hcCCCCceEeehhhccCHHHHHHH
Confidence 778899999999999874432 111111 135678999999999999999999
Q ss_pred HHHHHH
Q 014354 308 VEESAQ 313 (426)
Q Consensus 308 l~~~~~ 313 (426)
+.+.++
T Consensus 160 v~~~l~ 165 (444)
T COG1160 160 VLELLP 165 (444)
T ss_pred HHhhcC
Confidence 999985
No 15
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=7.3e-21 Score=190.04 Aligned_cols=182 Identities=20% Similarity=0.288 Sum_probs=134.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
..+.+|+|+|.||+|||||+|+|++..+.. ++..++|| |+.+.. ...
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~I------------v~~~aGTT----RD~I~~-----------------~~e 222 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVI------------VSDIAGTT----RDSIDI-----------------EFE 222 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEE------------ecCCCCcc----ccceee-----------------eEE
Confidence 357899999999999999999999998764 78888888 665521 100
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhc--hHHHHHHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA--SGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~--~~~~l~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~ 223 (426)
.++..|.||||+|+.....-.. .-..+.+.+ +...++++++|+|+..++..++ ..+
T Consensus 223 ----------------~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD-----~~i 281 (444)
T COG1160 223 ----------------RDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQD-----LRI 281 (444)
T ss_pred ----------------ECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHH-----HHH
Confidence 3567899999999977521000 001222222 2356899999999999998887 557
Q ss_pred HHHHhhccCCeEEEEecCCCCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354 224 CSILYKTRLPLVLAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (426)
Q Consensus 224 ~~~l~~~~~P~IlVlNKiDl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv 301 (426)
+.++...+.|+|||+||||+... .....+...+.... .|..+++++++||++|.|+
T Consensus 282 a~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l----------------------~~l~~a~i~~iSA~~~~~i 339 (444)
T COG1160 282 AGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKL----------------------PFLDFAPIVFISALTGQGL 339 (444)
T ss_pred HHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHh----------------------ccccCCeEEEEEecCCCCh
Confidence 77788999999999999999886 33334444443221 3457899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHH
Q 014354 302 EAYFKAVEESAQEFMETYKADLD 324 (426)
Q Consensus 302 ~~l~~~l~~~~~~~~~~~~~~~~ 324 (426)
..+++++...........+....
T Consensus 340 ~~l~~~i~~~~~~~~~ri~Ts~L 362 (444)
T COG1160 340 DKLFEAIKEIYECATRRISTSLL 362 (444)
T ss_pred HHHHHHHHHHHHHhccccCHHHH
Confidence 99999999988876666655543
No 16
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.84 E-value=5.1e-21 Score=190.79 Aligned_cols=176 Identities=19% Similarity=0.210 Sum_probs=123.5
Q ss_pred CCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcc
Q 014354 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL 142 (426)
Q Consensus 63 ~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~ 142 (426)
+......++++|+|+||+|||||+|.++..... |.++++||
T Consensus 162 PsIDp~trTlllcG~PNVGKSSf~~~vtradve-------------vqpYaFTT-------------------------- 202 (620)
T KOG1490|consen 162 PAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDE-------------VQPYAFTT-------------------------- 202 (620)
T ss_pred CCCCCCcCeEEEecCCCCCcHhhcccccccccc-------------cCCccccc--------------------------
Confidence 344667889999999999999999999988633 66666665
Q ss_pred cccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH----hcCCcEEEEEEeCCCCCCchhhhh
Q 014354 143 TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA----STFPTVVTYVVDTPRSANPMTFMS 218 (426)
Q Consensus 143 ~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~----~~~~d~vl~VVDa~~~~~~~~~~~ 218 (426)
..+|.++++. +...|+++||||+.+. ........++.+ +++..+|+|++|.+..|+..--.+
T Consensus 203 --ksL~vGH~dy---------kYlrwQViDTPGILD~---plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~Q 268 (620)
T KOG1490|consen 203 --KLLLVGHLDY---------KYLRWQVIDTPGILDR---PEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQ 268 (620)
T ss_pred --chhhhhhhhh---------heeeeeecCCccccCc---chhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHH
Confidence 2234555544 3368999999999885 233333333332 255778999999999888754444
Q ss_pred hHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHH-HHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeeccc
Q 014354 219 NMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWM-QDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS 297 (426)
Q Consensus 219 ~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~ 297 (426)
..++........++|+|+|+||||+..++.+.+-. +.++.+.. -++++++.+|+.+
T Consensus 269 vkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~-----------------------~~~v~v~~tS~~~ 325 (620)
T KOG1490|consen 269 VKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIID-----------------------DGNVKVVQTSCVQ 325 (620)
T ss_pred HHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHh-----------------------ccCceEEEecccc
Confidence 44555555668899999999999999987543222 11211111 1457899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 014354 298 GAGIEAYFKAVEESAQE 314 (426)
Q Consensus 298 g~gv~~l~~~l~~~~~~ 314 (426)
.+||.++....++.+..
T Consensus 326 eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 326 EEGVMDVRTTACEALLA 342 (620)
T ss_pred hhceeeHHHHHHHHHHH
Confidence 99999998777765443
No 17
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.83 E-value=5.9e-19 Score=165.58 Aligned_cols=232 Identities=19% Similarity=0.297 Sum_probs=141.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcc-----
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL----- 142 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~----- 142 (426)
+..+|+|.|+||||||||+++|.......+.+++|+..||.. .+.++..+ .|+++.. .+...++-=|-
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSS-p~tGGAlL--GDRiRM~----~~~~d~~vfIRS~atR 100 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSS-PFTGGALL--GDRIRMQ----ELSRDPGVFIRSMATR 100 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGG-GCC---SS----GGGCH----HHHTSTTEEEEEE---
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCC-CCCCCccc--ccHHHhc----CcCCCCCEEEeecCcC
Confidence 568999999999999999999999999999999999999954 44444433 4555432 33333320000
Q ss_pred cccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH
Q 014354 143 TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY 222 (426)
Q Consensus 143 ~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~ 222 (426)
.++.-++......+.++. .-+++++||+|.|+... +..+. ..+|++++|+-+..|-+-+.....++
T Consensus 101 G~lGGls~~t~~~v~ll~--aaG~D~IiiETVGvGQs------E~~I~-----~~aD~~v~v~~Pg~GD~iQ~~KaGim- 166 (266)
T PF03308_consen 101 GSLGGLSRATRDAVRLLD--AAGFDVIIIETVGVGQS------EVDIA-----DMADTVVLVLVPGLGDEIQAIKAGIM- 166 (266)
T ss_dssp SSHHHHHHHHHHHHHHHH--HTT-SEEEEEEESSSTH------HHHHH-----TTSSEEEEEEESSTCCCCCTB-TTHH-
T ss_pred CCCCCccHhHHHHHHHHH--HcCCCEEEEeCCCCCcc------HHHHH-----HhcCeEEEEecCCCccHHHHHhhhhh-
Confidence 011113445556666666 35699999999997442 12222 45799999998887777777665554
Q ss_pred HHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354 223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 223 ~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~ 302 (426)
+++.|+|+||.|+...+ ....+++......... .-....|++.+||.+|.|++
T Consensus 167 --------EiaDi~vVNKaD~~gA~---~~~~~l~~~l~l~~~~----------------~~~W~ppV~~tsA~~~~Gi~ 219 (266)
T PF03308_consen 167 --------EIADIFVVNKADRPGAD---RTVRDLRSMLHLLRER----------------EDGWRPPVLKTSALEGEGID 219 (266)
T ss_dssp --------HH-SEEEEE--SHHHHH---HHHHHHHHHHHHCSTS----------------CTSB--EEEEEBTTTTBSHH
T ss_pred --------hhccEEEEeCCChHHHH---HHHHHHHHHHhhcccc----------------ccCCCCCEEEEEeCCCCCHH
Confidence 45779999999944333 3333443332221100 00112589999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 014354 303 AYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRK 347 (426)
Q Consensus 303 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~ 347 (426)
+|+++|.++.......-........+.+.++.+.+++.+++++.+
T Consensus 220 eL~~~i~~~~~~l~~sg~~~~rr~~q~~~~~~~~~~~~l~~~~~~ 264 (266)
T PF03308_consen 220 ELWEAIDEHRDYLKESGELEERRREQARREMWELIEEELLERLRA 264 (266)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988766555433333444556777888888888887764
No 18
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.81 E-value=2.6e-18 Score=163.13 Aligned_cols=235 Identities=20% Similarity=0.275 Sum_probs=158.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCC-------
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN------- 138 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~n------- 138 (426)
..+..+|+|.|.||||||||+.+|.......+.+|+|+..||.. .+.+++. +.|+++ |..+...||
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS-p~TGGsi--LGDRiR----M~~~~~~~~vFiRs~~ 120 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS-PFTGGSI--LGDRIR----MQRLAVDPGVFIRSSP 120 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC-CCCCccc--cccHhh----HHhhccCCCeEEeecC
Confidence 45677999999999999999999999999999999999999954 4444433 355565 334443443
Q ss_pred -CCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhh
Q 014354 139 -GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFM 217 (426)
Q Consensus 139 -g~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~ 217 (426)
.|.... +|......+.++. ..++|++||+|.|.... ...+. ..+|++++|.-+..|-+.+...
T Consensus 121 srG~lGG---lS~at~~~i~~ld--AaG~DvIIVETVGvGQs------ev~I~-----~~aDt~~~v~~pg~GD~~Q~iK 184 (323)
T COG1703 121 SRGTLGG---LSRATREAIKLLD--AAGYDVIIVETVGVGQS------EVDIA-----NMADTFLVVMIPGAGDDLQGIK 184 (323)
T ss_pred CCccchh---hhHHHHHHHHHHH--hcCCCEEEEEecCCCcc------hhHHh-----hhcceEEEEecCCCCcHHHHHH
Confidence 333332 5566666777776 45699999999987442 22232 2358999988877766666655
Q ss_pred hhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeeccc
Q 014354 218 SNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS 297 (426)
Q Consensus 218 ~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~ 297 (426)
..++ ++..|+|+||.|+...+... ..+...++... ..........+++.+||.+
T Consensus 185 ~Gim---------EiaDi~vINKaD~~~A~~a~---r~l~~al~~~~--------------~~~~~~~W~ppv~~t~A~~ 238 (323)
T COG1703 185 AGIM---------EIADIIVINKADRKGAEKAA---RELRSALDLLR--------------EVWRENGWRPPVVTTSALE 238 (323)
T ss_pred hhhh---------hhhheeeEeccChhhHHHHH---HHHHHHHHhhc--------------ccccccCCCCceeEeeecc
Confidence 5444 56779999999955443222 12221111100 0011122346899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 014354 298 GAGIEAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDM 349 (426)
Q Consensus 298 g~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~ 349 (426)
|+|+++|+++|..+........-..-....+.+.++...++..+..++.+..
T Consensus 239 g~Gi~~L~~ai~~h~~~~~~sg~~~~~rr~q~~~~~~~~v~~~v~~~~~~~~ 290 (323)
T COG1703 239 GEGIDELWDAIEDHRKFLTESGLFTEKRRTQYVEWIRTLVRDEVLDRLEANP 290 (323)
T ss_pred CCCHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHcch
Confidence 9999999999998877765544333344556677777888888887777554
No 19
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.81 E-value=3.5e-19 Score=178.53 Aligned_cols=164 Identities=19% Similarity=0.283 Sum_probs=120.0
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (426)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~ 144 (426)
..+.+..|+|+|.||||||||||+|++...++ |+.+|+|| ||.+. ..+.
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AI------------VTdI~GTT----RDvie--------------e~i~- 261 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAI------------VTDIAGTT----RDVIE--------------EDIN- 261 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceE------------ecCCCCCc----cceEE--------------EEEE-
Confidence 35678999999999999999999999999875 89999999 77652 0011
Q ss_pred cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHH-HHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHHH
Q 014354 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI-ITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLY 222 (426)
Q Consensus 145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~-l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l~ 222 (426)
-.++.+.++||+|+.+- ....++. +.+.+.. ..+|+++||+|++......+..
T Consensus 262 ------------------i~G~pv~l~DTAGiRet--~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~----- 316 (454)
T COG0486 262 ------------------LNGIPVRLVDTAGIRET--DDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLA----- 316 (454)
T ss_pred ------------------ECCEEEEEEecCCcccC--ccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHH-----
Confidence 25688999999999874 2333322 2223322 4589999999998875554422
Q ss_pred HHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354 223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 223 ~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~ 302 (426)
... ....++|+++|+||+|+..+...... ......+++.+||++|+|++
T Consensus 317 ~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~------------------------------~~~~~~~~i~iSa~t~~Gl~ 365 (454)
T COG0486 317 LIE-LLPKKKPIIVVLNKADLVSKIELESE------------------------------KLANGDAIISISAKTGEGLD 365 (454)
T ss_pred HHH-hcccCCCEEEEEechhcccccccchh------------------------------hccCCCceEEEEecCccCHH
Confidence 122 34567899999999999987642111 01233469999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014354 303 AYFKAVEESAQEF 315 (426)
Q Consensus 303 ~l~~~l~~~~~~~ 315 (426)
.|.++|...+...
T Consensus 366 ~L~~~i~~~~~~~ 378 (454)
T COG0486 366 ALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887765
No 20
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.81 E-value=9.4e-20 Score=166.90 Aligned_cols=183 Identities=19% Similarity=0.276 Sum_probs=109.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+++|+.|+|||||+++|++.......... .. ......+ .. ..-...+...+.+....
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~-------~~--~~~~~~~---~~---~~e~~~~~ti~~~~~~~--- 63 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGI-------EE--TKNAFLD---KH---PEERERGITIDLSFISF--- 63 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHH-------HH--HHHCHHH---SS---HHHHHCTSSSSSEEEEE---
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccc-------cc--ccccccc---cc---chhhhcccccccccccc---
Confidence 4578999999999999999999988643211000 00 0000000 00 00111222222111110
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
. .......+.||||||+.++. ..+... ...+|++|+|||+..+...++ ...+..+
T Consensus 64 -~-----------~~~~~~~i~~iDtPG~~~f~------~~~~~~--~~~~D~ailvVda~~g~~~~~-----~~~l~~~ 118 (188)
T PF00009_consen 64 -E-----------KNENNRKITLIDTPGHEDFI------KEMIRG--LRQADIAILVVDANDGIQPQT-----EEHLKIL 118 (188)
T ss_dssp -E-----------BTESSEEEEEEEESSSHHHH------HHHHHH--HTTSSEEEEEEETTTBSTHHH-----HHHHHHH
T ss_pred -c-----------ccccccceeeccccccccee------ecccce--ecccccceeeeeccccccccc-----ccccccc
Confidence 0 01345789999999997642 112222 246899999999999887765 3455667
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHH-HHHHHhccccchhhhHHHHhhhhHhhhh--cCCceEEeecccCCCHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFE-VFQAAISSDHSYTSTLTNSLSLALDEFY--KNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~vv~vSA~~g~gv~~l 304 (426)
...++|.|+|+||+|+. .....+..+.+. .|... . .+. ...++|++||++|.|+..|
T Consensus 119 ~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~~~l~~~--------------~-----~~~~~~~~~vi~~Sa~~g~gi~~L 178 (188)
T PF00009_consen 119 RELGIPIIVVLNKMDLI-EKELEEIIEEIKEKLLKE--------------Y-----GENGEEIVPVIPISALTGDGIDEL 178 (188)
T ss_dssp HHTT-SEEEEEETCTSS-HHHHHHHHHHHHHHHHHH--------------T-----TSTTTSTEEEEEEBTTTTBTHHHH
T ss_pred cccccceEEeeeeccch-hhhHHHHHHHHHHHhccc--------------c-----ccCccccceEEEEecCCCCCHHHH
Confidence 78899999999999999 332333333332 22111 0 111 2468999999999999999
Q ss_pred HHHHHHHHH
Q 014354 305 FKAVEESAQ 313 (426)
Q Consensus 305 ~~~l~~~~~ 313 (426)
+++|.+.+|
T Consensus 179 l~~l~~~~P 187 (188)
T PF00009_consen 179 LEALVELLP 187 (188)
T ss_dssp HHHHHHHS-
T ss_pred HHHHHHhCc
Confidence 999998876
No 21
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=2.5e-18 Score=170.87 Aligned_cols=167 Identities=23% Similarity=0.297 Sum_probs=106.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..-|+|+|+||||||||||+|++.. |.++.+|++| +.|+-|++..
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~-------------~~va~ypfTT------------------~~p~~G~v~~---- 202 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAK-------------PKIADYPFTT------------------LHPNLGVVRV---- 202 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCC-------------CccCCCCCce------------------eCceEEEEEe----
Confidence 3579999999999999999999865 2367778777 1222333321
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
.....++||||||+.+.... ..++....+.+ ..++++|+|+|++.......+ ..+...+
T Consensus 203 --------------~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi--e~a~vlI~ViD~s~~~s~e~~----~~~~~EL 262 (335)
T PRK12299 203 --------------DDYKSFVIADIPGLIEGASEGAGLGHRFLKHI--ERTRLLLHLVDIEAVDPVEDY----KTIRNEL 262 (335)
T ss_pred --------------CCCcEEEEEeCCCccCCCCccccHHHHHHHHh--hhcCEEEEEEcCCCCCCHHHH----HHHHHHH
Confidence 13357999999999874221 12333333333 347899999999754321111 1111222
Q ss_pred hh-----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354 228 YK-----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 228 ~~-----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~ 302 (426)
.. .++|.|||+||+|+......... ....+.. . ...+++++||++|+|+.
T Consensus 263 ~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~--~~~~~~~---------------------~--~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 263 EKYSPELADKPRILVLNKIDLLDEEEEREK--RAALELA---------------------A--LGGPVFLISAVTGEGLD 317 (335)
T ss_pred HHhhhhcccCCeEEEEECcccCCchhHHHH--HHHHHHH---------------------h--cCCCEEEEEcCCCCCHH
Confidence 21 36899999999999865432111 1110000 1 12579999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014354 303 AYFKAVEESAQEF 315 (426)
Q Consensus 303 ~l~~~l~~~~~~~ 315 (426)
+++++|.+.+.+.
T Consensus 318 eL~~~L~~~l~~~ 330 (335)
T PRK12299 318 ELLRALWELLEEA 330 (335)
T ss_pred HHHHHHHHHHHhh
Confidence 9999998877653
No 22
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.78 E-value=4.4e-18 Score=151.88 Aligned_cols=162 Identities=17% Similarity=0.274 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
++|+++|++|||||||+|+|++.... +...++++ .... -+...
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-------------~~~~~~~t----~~~~--------------~~~~~------ 43 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-------------VAPYPFTT----KSLF--------------VGHFD------ 43 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-------------cCCCCCcc----ccee--------------EEEEc------
Confidence 46999999999999999999987542 12223322 0000 00000
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhc--hHHHHHHHHHhcCCcEEEEEEeCCCCCCc-hhhhhhHHHHHHH
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA--SGAIITEAFASTFPTVVTYVVDTPRSANP-MTFMSNMLYACSI 226 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~--~~~~l~~~~~~~~~d~vl~VVDa~~~~~~-~~~~~~~l~~~~~ 226 (426)
..+..+.||||||+.+...+.. ......... ...+|++++|+|+...... .... ...+..
T Consensus 44 -------------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~-~~~~d~~l~v~d~~~~~~~~~~~~---~~~~~~ 106 (168)
T cd01897 44 -------------YKYLRWQVIDTPGLLDRPLEERNTIEMQAITAL-AHLRAAVLFLFDPSETCGYSLEEQ---LSLFEE 106 (168)
T ss_pred -------------cCceEEEEEECCCcCCccccCCchHHHHHHHHH-HhccCcEEEEEeCCcccccchHHH---HHHHHH
Confidence 1346899999999864311111 001111111 2336899999999764331 1111 122233
Q ss_pred Hhhc--cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 227 LYKT--RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 227 l~~~--~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
+... +.|+|+|+||+|+........ ...+. . ....+++++||++|.|+.++
T Consensus 107 l~~~~~~~pvilv~NK~Dl~~~~~~~~----~~~~~----------------------~-~~~~~~~~~Sa~~~~gi~~l 159 (168)
T cd01897 107 IKPLFKNKPVIVVLNKIDLLTFEDLSE----IEEEE----------------------E-LEGEEVLKISTLTEEGVDEV 159 (168)
T ss_pred HHhhcCcCCeEEEEEccccCchhhHHH----HHHhh----------------------h-hccCceEEEEecccCCHHHH
Confidence 3333 799999999999987553322 11110 1 13467999999999999999
Q ss_pred HHHHHHHH
Q 014354 305 FKAVEESA 312 (426)
Q Consensus 305 ~~~l~~~~ 312 (426)
+++|.+.+
T Consensus 160 ~~~l~~~~ 167 (168)
T cd01897 160 KNKACELL 167 (168)
T ss_pred HHHHHHHh
Confidence 99998764
No 23
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.78 E-value=5e-18 Score=150.29 Aligned_cols=113 Identities=19% Similarity=0.228 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccC-CeEEEEecCCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRL-PLVLAFNKTDV 243 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~-P~IlVlNKiDl 243 (426)
+..+.||||||+.++. ..+... ...+|++++|+|+..+.....+ ..+..+...+. |+++|+||+|+
T Consensus 50 ~~~~~~~DtpG~~~~~------~~~~~~--~~~ad~ii~V~d~~~~~~~~~~-----~~~~~~~~~~~~~~ilv~NK~Dl 116 (164)
T cd04171 50 GKRLGFIDVPGHEKFI------KNMLAG--AGGIDLVLLVVAADEGIMPQTR-----EHLEILELLGIKRGLVVLTKADL 116 (164)
T ss_pred CcEEEEEECCChHHHH------HHHHhh--hhcCCEEEEEEECCCCccHhHH-----HHHHHHHHhCCCcEEEEEECccc
Confidence 3578999999986541 111111 2458999999999775443321 11222333344 99999999999
Q ss_pred CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (426)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~ 310 (426)
............+...... ..+...+++++||++|.|++++++.+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 117 VDEDWLELVEEEIRELLAG--------------------TFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred cCHHHHHHHHHHHHHHHHh--------------------cCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 8754222222222211100 0113468999999999999999988753
No 24
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=6.6e-18 Score=175.92 Aligned_cols=178 Identities=19% Similarity=0.255 Sum_probs=113.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
...+|+|+|.||||||||+|+|++..+.. ++..++++ ++.+ ...+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~------------~s~~~gtT----~d~~--------------~~~~~---- 255 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSV------------VDDVAGTT----VDPV--------------DSLIE---- 255 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccc------------ccCCCCcc----CCcc--------------eEEEE----
Confidence 45899999999999999999999876432 34445444 2211 01111
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHH----HHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI----ITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~----l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~ 223 (426)
..+..+.||||||+.+... ...+.. +........+|++|+|+|+..+.+.+.. .+
T Consensus 256 ---------------~~~~~~~l~DTaG~~~~~~-~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~-----~~ 314 (472)
T PRK03003 256 ---------------LGGKTWRFVDTAGLRRRVK-QASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQ-----RV 314 (472)
T ss_pred ---------------ECCEEEEEEECCCcccccc-ccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHH-----HH
Confidence 1345788999999865321 111111 1111112458999999999987765442 23
Q ss_pred HHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 224 ~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
+..+...++|+|||+||+|+............+.. .+ ....+.+++++||++|.|+.+
T Consensus 315 ~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~-----------------~l-----~~~~~~~~~~~SAk~g~gv~~ 372 (472)
T PRK03003 315 LSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDR-----------------EL-----AQVPWAPRVNISAKTGRAVDK 372 (472)
T ss_pred HHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHH-----------------hc-----ccCCCCCEEEEECCCCCCHHH
Confidence 44455678999999999999864422111111110 00 112346899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhH
Q 014354 304 YFKAVEESAQEFMETYKAD 322 (426)
Q Consensus 304 l~~~l~~~~~~~~~~~~~~ 322 (426)
++..+.+.+......++..
T Consensus 373 lf~~i~~~~~~~~~~i~t~ 391 (472)
T PRK03003 373 LVPALETALESWDTRIPTG 391 (472)
T ss_pred HHHHHHHHHHHhcccCCHH
Confidence 9999998877665554443
No 25
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=3.9e-18 Score=175.93 Aligned_cols=170 Identities=21% Similarity=0.274 Sum_probs=107.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
...|+|+|+||||||||||+|++.. |.++.+|++| +.|+-|++.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~ak-------------pkIadypfTT------------------l~P~lGvv~----- 202 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAK-------------PKIADYPFTT------------------LVPNLGVVQ----- 202 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCC-------------ccccccCccc------------------ccceEEEEE-----
Confidence 4589999999999999999999874 2366778877 223334433
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCCCC---CchhhhhhHHHHH
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSA---NPMTFMSNMLYAC 224 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~~~---~~~~~~~~~l~~~ 224 (426)
..+.+++|+||||+++.... ..++....+.+ ..++++|+|||++... ++..-.......+
T Consensus 203 --------------~~~~~f~laDtPGliegas~g~gLg~~fLrhi--eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL 266 (500)
T PRK12296 203 --------------AGDTRFTVADVPGLIPGASEGKGLGLDFLRHI--ERCAVLVHVVDCATLEPGRDPLSDIDALEAEL 266 (500)
T ss_pred --------------ECCeEEEEEECCCCccccchhhHHHHHHHHHH--HhcCEEEEEECCcccccccCchhhHHHHHHHH
Confidence 23468999999999764211 11222222222 4579999999997532 2211111111111
Q ss_pred HHH-----------hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEe
Q 014354 225 SIL-----------YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGV 293 (426)
Q Consensus 225 ~~l-----------~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~v 293 (426)
... ...++|.|||+||+|+.....+.++. .... ... ..++++|
T Consensus 267 ~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l---~~~l---------------------~~~--g~~Vf~I 320 (500)
T PRK12296 267 AAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFV---RPEL---------------------EAR--GWPVFEV 320 (500)
T ss_pred HHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHH---HHHH---------------------HHc--CCeEEEE
Confidence 111 12468999999999997554322221 1000 011 2579999
Q ss_pred ecccCCCHHHHHHHHHHHHHHHH
Q 014354 294 SSVSGAGIEAYFKAVEESAQEFM 316 (426)
Q Consensus 294 SA~~g~gv~~l~~~l~~~~~~~~ 316 (426)
||+++.|+.+|+.+|.+.+...+
T Consensus 321 SA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 321 SAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred ECCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999998877654
No 26
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.78 E-value=6.8e-18 Score=148.76 Aligned_cols=162 Identities=23% Similarity=0.363 Sum_probs=100.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..+|+++|++|||||||+|+|++.... ++. ..+.++ +.. ..+++.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~------~~~------~~~~~~----~~~--------------~~~~~~----- 47 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKIS------IVS------PKPQTT----RNR--------------IRGIYT----- 47 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceE------ecc------CCCCce----ece--------------EEEEEE-----
Confidence 468999999999999999999987532 111 111111 000 011111
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHH--HhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~--~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
..+..+.+|||||+...... ....+.... ....+|++++|+|+........ ......
T Consensus 48 --------------~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~-----~~~~~~ 106 (168)
T cd04163 48 --------------DDDAQIIFVDTPGIHKPKKK--LGERMVKAAWSALKDVDLVLFVVDASEPIGEGD-----EFILEL 106 (168)
T ss_pred --------------cCCeEEEEEECCCCCcchHH--HHHHHHHHHHHHHHhCCEEEEEEECCCccCchH-----HHHHHH
Confidence 13468999999999765321 111121111 1244799999999987643322 122333
Q ss_pred HhhccCCeEEEEecCCCCC-hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQ-HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
+...+.|.++|+||+|+.. ......+...+. ......+++++|++++.|+++++
T Consensus 107 ~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~s~~~~~~~~~l~ 161 (168)
T cd04163 107 LKKSKTPVILVLNKIDLVKDKEDLLPLLEKLK-------------------------ELGPFAEIFPISALKGENVDELL 161 (168)
T ss_pred HHHhCCCEEEEEEchhccccHHHHHHHHHHHH-------------------------hccCCCceEEEEeccCCChHHHH
Confidence 4455799999999999984 433333332222 12234679999999999999999
Q ss_pred HHHHHH
Q 014354 306 KAVEES 311 (426)
Q Consensus 306 ~~l~~~ 311 (426)
++|.+.
T Consensus 162 ~~l~~~ 167 (168)
T cd04163 162 EEIVKY 167 (168)
T ss_pred HHHHhh
Confidence 998764
No 27
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.77 E-value=1.3e-17 Score=171.71 Aligned_cols=178 Identities=20% Similarity=0.294 Sum_probs=113.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
...+|+++|.+|+|||||+|+|++..... ++..++++ ++.+ ...+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~------------~~~~~gtt----~~~~--------------~~~~~---- 216 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVI------------VSDIAGTT----RDSI--------------DIPFE---- 216 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeee------------cCCCCCce----ECcE--------------eEEEE----
Confidence 45789999999999999999999875321 33344443 1111 00000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh-chH-HHHHHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASG-AIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~-~~~-~~l~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
..+..+.||||||+.+..... ... ....+.. ....+|++|+|+|+..+...++ ..++
T Consensus 217 ---------------~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~-----~~~~ 276 (429)
T TIGR03594 217 ---------------RNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQD-----LRIA 276 (429)
T ss_pred ---------------ECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHH-----HHHH
Confidence 133579999999997653211 011 1112222 1245899999999998876655 2344
Q ss_pred HHHhhccCCeEEEEecCCCC-ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 225 SILYKTRLPLVLAFNKTDVA-QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
..+...++|+|+|+||+|+. .......+...+.. . + .+..+.+++++||++|.|+.+
T Consensus 277 ~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~---~--------------~-----~~~~~~~vi~~SA~~g~~v~~ 334 (429)
T TIGR03594 277 GLILEAGKALVIVVNKWDLVKDEKTREEFKKELRR---K--------------L-----PFLDFAPIVFISALTGQGVDK 334 (429)
T ss_pred HHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHH---h--------------c-----ccCCCCceEEEeCCCCCCHHH
Confidence 55566789999999999998 33322223222221 0 0 123457899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 014354 304 YFKAVEESAQEFMETYKA 321 (426)
Q Consensus 304 l~~~l~~~~~~~~~~~~~ 321 (426)
+++++...........+.
T Consensus 335 l~~~i~~~~~~~~~~i~t 352 (429)
T TIGR03594 335 LLDAIDEVYENANRRIST 352 (429)
T ss_pred HHHHHHHHHHHhcCcCCH
Confidence 999999877665444443
No 28
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.77 E-value=7.5e-18 Score=167.20 Aligned_cols=167 Identities=20% Similarity=0.329 Sum_probs=104.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..-|+|+|+||||||||||+|++.. |.++.+|++| +.|+-|++..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~-------------~~va~y~fTT------------------~~p~ig~v~~---- 201 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAK-------------PKIADYPFTT------------------LVPNLGVVRV---- 201 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCC-------------ccccCCCCCc------------------cCCEEEEEEe----
Confidence 3579999999999999999999865 2366777776 1122233221
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCCCC--CchhhhhhHHHHHH
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACS 225 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~~~--~~~~~~~~~l~~~~ 225 (426)
....+++|+||||+.+.... ..++....+.+ ..++++|+|+|+...- .+..........+.
T Consensus 202 --------------~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi--erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~ 265 (329)
T TIGR02729 202 --------------DDGRSFVIADIPGLIEGASEGAGLGHRFLKHI--ERTRVLLHLIDISPLDGRDPIEDYEIIRNELK 265 (329)
T ss_pred --------------CCceEEEEEeCCCcccCCcccccHHHHHHHHH--HhhCEEEEEEcCccccccCHHHHHHHHHHHHH
Confidence 12368999999999865321 12333333333 3478999999987531 12111111111111
Q ss_pred HHh--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 226 ILY--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 226 ~l~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
... ..++|.|||+||+|+........+.+.+. ..+ ..+++++||++|+|+.+
T Consensus 266 ~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~-------------------------~~~-~~~vi~iSAktg~GI~e 319 (329)
T TIGR02729 266 KYSPELAEKPRIVVLNKIDLLDEEELAELLKELK-------------------------KAL-GKPVFPISALTGEGLDE 319 (329)
T ss_pred HhhhhhccCCEEEEEeCccCCChHHHHHHHHHHH-------------------------HHc-CCcEEEEEccCCcCHHH
Confidence 111 14789999999999987643322222111 011 24699999999999999
Q ss_pred HHHHHHHHH
Q 014354 304 YFKAVEESA 312 (426)
Q Consensus 304 l~~~l~~~~ 312 (426)
++++|.+.+
T Consensus 320 L~~~I~~~l 328 (329)
T TIGR02729 320 LLYALAELL 328 (329)
T ss_pred HHHHHHHHh
Confidence 999998654
No 29
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.77 E-value=1.1e-17 Score=149.36 Aligned_cols=165 Identities=19% Similarity=0.311 Sum_probs=96.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
.|+|+|.+|||||||+|+|.+.... ++..|+++ +.. .-+.+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~-------------v~~~~~~t----~~~--------------~~~~~~~------ 44 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-------------IADYPFTT----LVP--------------NLGVVRV------ 44 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc-------------ccCCCccc----cCC--------------cceEEEc------
Confidence 4899999999999999999975421 33333333 100 0111110
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY- 228 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~- 228 (426)
.....+.||||||+.+..... .+.....+.+ ..+|++++|+|++...............+....
T Consensus 45 ------------~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~--~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~ 110 (170)
T cd01898 45 ------------DDGRSFVVADIPGLIEGASEGKGLGHRFLRHI--ERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNP 110 (170)
T ss_pred ------------CCCCeEEEEecCcccCcccccCCchHHHHHHH--HhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCc
Confidence 112388999999986532111 1222222222 347999999999865222121111111111111
Q ss_pred -hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 229 -KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 229 -~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
..++|.++|+||+|+........+...+. . . ....+++++||++|.|+.+++++
T Consensus 111 ~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~---------------------~-~~~~~~~~~Sa~~~~gi~~l~~~ 165 (170)
T cd01898 111 ELLEKPRIVVLNKIDLLDEEELFELLKELL---K---------------------E-LWGKPVFPISALTGEGLDELLRK 165 (170)
T ss_pred cccccccEEEEEchhcCCchhhHHHHHHHH---h---------------------h-CCCCCEEEEecCCCCCHHHHHHH
Confidence 13689999999999987654333322211 0 1 02356999999999999999999
Q ss_pred HHHH
Q 014354 308 VEES 311 (426)
Q Consensus 308 l~~~ 311 (426)
|.+.
T Consensus 166 i~~~ 169 (170)
T cd01898 166 LAEL 169 (170)
T ss_pred HHhh
Confidence 8764
No 30
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=7.8e-18 Score=161.54 Aligned_cols=174 Identities=21% Similarity=0.332 Sum_probs=115.8
Q ss_pred CCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccccccccc-ccchhhhHHHHHHHHHcCCCCCC
Q 014354 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA-NIDIRDTIRYKEVMKQFNLGPNG 139 (426)
Q Consensus 61 ~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t-~i~~r~~~~~~~~~~~~~l~~ng 139 (426)
..+......++|+|.|+||||||||+++|++.. |-+..+|+|| .+.+
T Consensus 160 ~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Ak-------------pEvA~YPFTTK~i~v------------------- 207 (346)
T COG1084 160 KLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAK-------------PEVAPYPFTTKGIHV------------------- 207 (346)
T ss_pred cCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCC-------------CccCCCCccccceeE-------------------
Confidence 344456678899999999999999999999987 4589999998 2211
Q ss_pred CcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH--hcCCcEEEEEEeCCCCCCchhhh
Q 014354 140 GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFM 217 (426)
Q Consensus 140 ~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~--~~~~d~vl~VVDa~~~~~~~~~~ 217 (426)
| ++. .+...|++|||||+.+.. ...++.+-.++.. .+..++|+|++|++..+...-..
T Consensus 208 G----------hfe---------~~~~R~QvIDTPGlLDRP-l~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~ 267 (346)
T COG1084 208 G----------HFE---------RGYLRIQVIDTPGLLDRP-LEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEE 267 (346)
T ss_pred e----------eee---------cCCceEEEecCCcccCCC-hHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHH
Confidence 1 111 245699999999998851 1222222222222 25689999999999888764333
Q ss_pred hhHHHHHHHHh-hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecc
Q 014354 218 SNMLYACSILY-KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV 296 (426)
Q Consensus 218 ~~~l~~~~~l~-~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~ 296 (426)
+..++ ..++ ....|+++|+||+|....+.+.+....+. . -+....+.+++.
T Consensus 268 Q~~L~--~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~---~-----------------------~~~~~~~~~~~~ 319 (346)
T COG1084 268 QISLL--EEIKELFKAPIVVVINKIDIADEEKLEEIEASVL---E-----------------------EGGEEPLKISAT 319 (346)
T ss_pred HHHHH--HHHHHhcCCCeEEEEecccccchhHHHHHHHHHH---h-----------------------hccccccceeee
Confidence 32221 1222 33489999999999998775544432221 1 012235668889
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 014354 297 SGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 297 ~g~gv~~l~~~l~~~~~~ 314 (426)
.+.+++.+...+...+.+
T Consensus 320 ~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 320 KGCGLDKLREEVRKTALE 337 (346)
T ss_pred ehhhHHHHHHHHHHHhhc
Confidence 999999888777766544
No 31
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.77 E-value=5.4e-18 Score=153.65 Aligned_cols=186 Identities=20% Similarity=0.211 Sum_probs=105.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCC-CCccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN-GGILTSLNLFT 149 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~n-g~i~~~~~~ls 149 (426)
.|+|+|.+|||||||+|+|++.........++.... .+.... ....+..-. ......
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~-----------~~~~~~------~~~~~~~~~~~~~~~~----- 58 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETF-----------LDVLKE------ERERGITIKSGVATFE----- 58 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceeccc-----------ccCCHH------HHHcCCCeecceEEEe-----
Confidence 389999999999999999999876543322211100 000000 000000000 000010
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~ 229 (426)
....++.||||||+.++. ......+ ..+|++++|+|+..+..... ...+..+..
T Consensus 59 -------------~~~~~~~liDtpG~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~~~~~-----~~~~~~~~~ 112 (189)
T cd00881 59 -------------WPDRRVNFIDTPGHEDFS------SEVIRGL--SVSDGAILVVDANEGVQPQT-----REHLRIARE 112 (189)
T ss_pred -------------eCCEEEEEEeCCCcHHHH------HHHHHHH--HhcCEEEEEEECCCCCcHHH-----HHHHHHHHH
Confidence 124689999999986641 1111222 34799999999987664432 222334455
Q ss_pred ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354 230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE 309 (426)
Q Consensus 230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~ 309 (426)
.++|+++|+||+|+............+..+.........+ ...+ ......+++++||++|.|+.+++.+|.
T Consensus 113 ~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~v~~~Sa~~g~gi~~l~~~l~ 183 (189)
T cd00881 113 GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTK--------EEGT-RNGLLVPIVPGSALTGIGVEELLEAIV 183 (189)
T ss_pred CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchh--------hhhc-ccCCcceEEEEecccCcCHHHHHHHHH
Confidence 7899999999999997544333333332221110000000 0000 012357899999999999999999998
Q ss_pred HHHH
Q 014354 310 ESAQ 313 (426)
Q Consensus 310 ~~~~ 313 (426)
..++
T Consensus 184 ~~l~ 187 (189)
T cd00881 184 EHLP 187 (189)
T ss_pred hhCC
Confidence 8764
No 32
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.77 E-value=1.3e-17 Score=181.71 Aligned_cols=178 Identities=18% Similarity=0.219 Sum_probs=115.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
..++|+|+|.||||||||+|+|++..+.. ++..++++ ++.+ ...+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~------------v~~~~gtT----~d~~--------------~~~~~---- 494 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAV------------VNDLAGTT----RDPV--------------DEIVE---- 494 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccc------------cCCCCCCC----cCcc--------------eeEEE----
Confidence 34789999999999999999999886432 44555555 2221 01111
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHH---HHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII---TEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l---~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~ 223 (426)
..+.++.||||||+.+.... ..+... .+.. ....+|++++|+|+..+.+.++. .+
T Consensus 495 ---------------~~~~~~~liDTaG~~~~~~~-~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~-----~i 553 (712)
T PRK09518 495 ---------------IDGEDWLFIDTAGIKRRQHK-LTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDL-----KV 553 (712)
T ss_pred ---------------ECCCEEEEEECCCcccCccc-chhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHH-----HH
Confidence 23467889999998654211 111111 1111 12458999999999988766542 23
Q ss_pred HHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 224 ~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
+..+...++|+|||+||+|+........+...+.. . + .+..+.+++++||++|.|+.+
T Consensus 554 ~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~---~------------------l-~~~~~~~ii~iSAktg~gv~~ 611 (712)
T PRK09518 554 MSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKT---E------------------F-DRVTWARRVNLSAKTGWHTNR 611 (712)
T ss_pred HHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHH---h------------------c-cCCCCCCEEEEECCCCCCHHH
Confidence 44455678999999999999875432222111110 0 0 122457899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhH
Q 014354 304 YFKAVEESAQEFMETYKAD 322 (426)
Q Consensus 304 l~~~l~~~~~~~~~~~~~~ 322 (426)
|++.+.+..+.+....+..
T Consensus 612 L~~~i~~~~~~~~~~i~T~ 630 (712)
T PRK09518 612 LAPAMQEALESWDQRIPTG 630 (712)
T ss_pred HHHHHHHHHHHhcccCChH
Confidence 9999999888765555543
No 33
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.77 E-value=1.6e-17 Score=156.37 Aligned_cols=215 Identities=13% Similarity=0.123 Sum_probs=116.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+++|++++|||||+++|+...+..+......+.+-.......+.+ ..-....+|+...|.+.+... ..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t--------~~~~~~~~g~~~~~~~~~~~~--~~ 70 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRT--------SSVSNEILGFDSDGEVVNYPD--NH 70 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCch--------hhhhhhhcccCCCCceecCCC--Cc
Confidence 37899999999999999999766655433333222211110000000 000112344444333222100 00
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhc
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT 230 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~ 230 (426)
....-.... ...+..+.|+||||+.++. ..+...+....+|++++|||+..+....+ ...+..+...
T Consensus 71 ~~~~~~~~~--~~~~~~i~liDtpG~~~~~------~~~~~~~~~~~~D~~llVvda~~g~~~~d-----~~~l~~l~~~ 137 (224)
T cd04165 71 LSESDIEIC--EKSSKLVTFIDLAGHERYL------KTTLFGLTGYAPDYAMLVVAANAGIIGMT-----KEHLGLALAL 137 (224)
T ss_pred cccccceee--eeCCcEEEEEECCCcHHHH------HHHHHhhcccCCCEEEEEEECCCCCcHHH-----HHHHHHHHHc
Confidence 000000011 1235678999999996642 22233333335899999999998876655 3445566778
Q ss_pred cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhcccc-ch----hhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDH-SY----TSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 231 ~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~-~~----~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
++|+|+|+||+|+.+..........+..+........ .+ ....... +. ...+...+|+|++||.+|+|++.|+
T Consensus 138 ~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~-~~-~~~~~~~~pi~~vSavtg~Gi~~L~ 215 (224)
T cd04165 138 NIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLA-AS-NFSSERIVPIFQVSNVTGEGLDLLH 215 (224)
T ss_pred CCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeeh-hh-cCCccccCcEEEeeCCCccCHHHHH
Confidence 8999999999999877655445544443322100000 00 0000000 00 0012334699999999999999998
Q ss_pred HHHHH
Q 014354 306 KAVEE 310 (426)
Q Consensus 306 ~~l~~ 310 (426)
..|..
T Consensus 216 ~~L~~ 220 (224)
T cd04165 216 AFLNL 220 (224)
T ss_pred HHHHh
Confidence 87753
No 34
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=1.5e-17 Score=171.74 Aligned_cols=177 Identities=19% Similarity=0.289 Sum_probs=114.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
...+|+|+|+||+|||||+|+|++..... ++..++++ ++.+. ..+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~------------~~~~~gtt----~~~~~--------------~~~~---- 217 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVI------------VSDIAGTT----RDSID--------------TPFE---- 217 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcee------------ecCCCCce----EEEEE--------------EEEE----
Confidence 46899999999999999999999875321 33334343 11110 0000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhc-hH-HHHHHHHH-hcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-SG-AIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~-~~-~~l~~~~~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
..+.++.||||||+........ .. ......+. ...+|++|+|+|+..+...++ ..++
T Consensus 218 ---------------~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~-----~~i~ 277 (435)
T PRK00093 218 ---------------RDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQD-----LRIA 277 (435)
T ss_pred ---------------ECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHH-----HHHH
Confidence 1346799999999876422111 11 11122221 245799999999998876655 2344
Q ss_pred HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
..+...++|+|+|+||+|+........+...+.... .+..+.+++++||++|.|+.++
T Consensus 278 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l----------------------~~~~~~~i~~~SA~~~~gv~~l 335 (435)
T PRK00093 278 GLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRL----------------------PFLDYAPIVFISALTGQGVDKL 335 (435)
T ss_pred HHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhc----------------------ccccCCCEEEEeCCCCCCHHHH
Confidence 555667899999999999986553333333222111 1234678999999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 014354 305 FKAVEESAQEFMETYK 320 (426)
Q Consensus 305 ~~~l~~~~~~~~~~~~ 320 (426)
++.+...........+
T Consensus 336 ~~~i~~~~~~~~~~i~ 351 (435)
T PRK00093 336 LEAIDEAYENANRRIS 351 (435)
T ss_pred HHHHHHHHHHHcCcCC
Confidence 9999887766544444
No 35
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.76 E-value=1.5e-17 Score=166.45 Aligned_cols=162 Identities=21% Similarity=0.238 Sum_probs=98.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
..++|+|+|+||||||||+|+|++.... +...+++| ++.. ...+.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~-------------v~~~~~tT----~d~~--------------~~~i~---- 232 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVY-------------AADQLFAT----LDPT--------------TRRLD---- 232 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcee-------------eccCCccc----cCCE--------------EEEEE----
Confidence 4579999999999999999999987521 33444444 1111 00000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
...+..++||||||+.+..++..... +...+. ...+|++++|+|+++...... .......+..
T Consensus 233 --------------~~~~~~i~l~DT~G~~~~l~~~lie~-f~~tle~~~~ADlil~VvD~s~~~~~~~-~~~~~~~L~~ 296 (351)
T TIGR03156 233 --------------LPDGGEVLLTDTVGFIRDLPHELVAA-FRATLEEVREADLLLHVVDASDPDREEQ-IEAVEKVLEE 296 (351)
T ss_pred --------------eCCCceEEEEecCcccccCCHHHHHH-HHHHHHHHHhCCEEEEEEECCCCchHHH-HHHHHHHHHH
Confidence 01346899999999854211111111 111221 235899999999976543221 1111222333
Q ss_pred HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
+...++|+|+|+||+|+....... ... ....++|++||++|.|+++|++
T Consensus 297 l~~~~~piIlV~NK~Dl~~~~~v~----~~~---------------------------~~~~~~i~iSAktg~GI~eL~~ 345 (351)
T TIGR03156 297 LGAEDIPQLLVYNKIDLLDEPRIE----RLE---------------------------EGYPEAVFVSAKTGEGLDLLLE 345 (351)
T ss_pred hccCCCCEEEEEEeecCCChHhHH----HHH---------------------------hCCCCEEEEEccCCCCHHHHHH
Confidence 333478999999999997643211 000 0123589999999999999999
Q ss_pred HHHHH
Q 014354 307 AVEES 311 (426)
Q Consensus 307 ~l~~~ 311 (426)
+|.+.
T Consensus 346 ~I~~~ 350 (351)
T TIGR03156 346 AIAER 350 (351)
T ss_pred HHHhh
Confidence 98754
No 36
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.76 E-value=1.6e-17 Score=153.71 Aligned_cols=163 Identities=20% Similarity=0.235 Sum_probs=97.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
..++|+|+|++|||||||+|+|++..... ...++++ ++ . .-+.+..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~-------------~~~~~~t-~~---~--------------~~~~~~~--- 85 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYA-------------EDQLFAT-LD---P--------------TTRRLRL--- 85 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhcc-------------CCcccee-cc---c--------------eeEEEEe---
Confidence 45799999999999999999999975321 1111111 00 0 0000000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
.....+.||||||+.+..... ....+...+. ...+|++++|+|+......... ......+..
T Consensus 86 ---------------~~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~ 148 (204)
T cd01878 86 ---------------PDGREVLLTDTVGFIRDLPHQ-LVEAFRSTLEEVAEADLLLHVVDASDPDYEEQI-ETVEKVLKE 148 (204)
T ss_pred ---------------cCCceEEEeCCCccccCCCHH-HHHHHHHHHHHHhcCCeEEEEEECCCCChhhHH-HHHHHHHHH
Confidence 122489999999986532111 1111111111 2357999999999765433221 111122222
Q ss_pred HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
+...++|+++|+||+|+....... ... .....+++++||++|.|+.++++
T Consensus 149 ~~~~~~~viiV~NK~Dl~~~~~~~---~~~---------------------------~~~~~~~~~~Sa~~~~gi~~l~~ 198 (204)
T cd01878 149 LGAEDIPMILVLNKIDLLDDEELE---ERL---------------------------EAGRPDAVFISAKTGEGLDELLE 198 (204)
T ss_pred cCcCCCCEEEEEEccccCChHHHH---HHh---------------------------hcCCCceEEEEcCCCCCHHHHHH
Confidence 233468999999999998765322 000 11245799999999999999999
Q ss_pred HHHHH
Q 014354 307 AVEES 311 (426)
Q Consensus 307 ~l~~~ 311 (426)
+|...
T Consensus 199 ~L~~~ 203 (204)
T cd01878 199 AIEEL 203 (204)
T ss_pred HHHhh
Confidence 98764
No 37
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=4.1e-17 Score=145.20 Aligned_cols=167 Identities=22% Similarity=0.340 Sum_probs=101.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
+.+|+++|.+|+|||||+|+|++..... ....+.++ +... ...+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~------------~~~~~~~~----~~~~--------------~~~~~----- 46 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI------------VSDIAGTT----RDSI--------------DVPFE----- 46 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee------------ccCCCCCc----cCce--------------eeEEE-----
Confidence 4679999999999999999999875321 11122222 0000 00000
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhch-HH-HHHHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSAS-GA-IITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~-~~-~l~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
..+.++.+|||||+.+....... .. .....+ ....+|++++|+|+........ ..++.
T Consensus 47 --------------~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-----~~~~~ 107 (174)
T cd01895 47 --------------YDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQD-----LRIAG 107 (174)
T ss_pred --------------ECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhH-----HHHHH
Confidence 13357899999998765211111 11 111112 1245799999999987665433 22334
Q ss_pred HHhhccCCeEEEEecCCCCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
.+...+.|+++|+||+|+... .....+.+.+.. . + ......+++++||++|.|+.+
T Consensus 108 ~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~--------------~-----~~~~~~~~~~~Sa~~~~~i~~ 165 (174)
T cd01895 108 LILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRR---K--------------L-----PFLDYAPIVFISALTGQGVDK 165 (174)
T ss_pred HHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHh---h--------------c-----ccccCCceEEEeccCCCCHHH
Confidence 445568999999999999876 322222222221 0 0 112346899999999999999
Q ss_pred HHHHHHHH
Q 014354 304 YFKAVEES 311 (426)
Q Consensus 304 l~~~l~~~ 311 (426)
+++++.+.
T Consensus 166 ~~~~l~~~ 173 (174)
T cd01895 166 LFDAIDEV 173 (174)
T ss_pred HHHHHHHh
Confidence 99988753
No 38
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=6.3e-18 Score=171.65 Aligned_cols=169 Identities=22% Similarity=0.323 Sum_probs=122.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.++|+|+++|+...||||||..|.+..+..+..+.|-..- |+....++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhI--------------------------------GA~~v~~~ 50 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHI--------------------------------GAYQVPLD 50 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEe--------------------------------eeEEEEec
Confidence 4778999999999999999999999987765443332111 11111100
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
. .....+.|+|||||.-|.+.++.|. ..+|++++||++.+++.+++ ..+...
T Consensus 51 ---~------------~~~~~itFiDTPGHeAFt~mRaRGa--------~vtDIaILVVa~dDGv~pQT-----iEAI~h 102 (509)
T COG0532 51 ---V------------IKIPGITFIDTPGHEAFTAMRARGA--------SVTDIAILVVAADDGVMPQT-----IEAINH 102 (509)
T ss_pred ---c------------CCCceEEEEcCCcHHHHHHHHhcCC--------ccccEEEEEEEccCCcchhH-----HHHHHH
Confidence 0 0236899999999977643333333 45799999999999999998 556777
Q ss_pred HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
++..+.|+|+++||+|+....-- ..... |+ +.+...+.|.....+||+||++|+|+++|+.
T Consensus 103 ak~a~vP~iVAiNKiDk~~~np~-~v~~e---l~---------------~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~ 163 (509)
T COG0532 103 AKAAGVPIVVAINKIDKPEANPD-KVKQE---LQ---------------EYGLVPEEWGGDVIFVPVSAKTGEGIDELLE 163 (509)
T ss_pred HHHCCCCEEEEEecccCCCCCHH-HHHHH---HH---------------HcCCCHhhcCCceEEEEeeccCCCCHHHHHH
Confidence 88999999999999999954311 12211 11 2266667888889999999999999999999
Q ss_pred HHHHHHHH
Q 014354 307 AVEESAQE 314 (426)
Q Consensus 307 ~l~~~~~~ 314 (426)
.+.....-
T Consensus 164 ~ill~aev 171 (509)
T COG0532 164 LILLLAEV 171 (509)
T ss_pred HHHHHHHH
Confidence 88765544
No 39
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.75 E-value=1.5e-17 Score=148.16 Aligned_cols=118 Identities=19% Similarity=0.279 Sum_probs=74.6
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
+.++.||||||+..+. .+.. .....+|++++|+|+..+.....+ ..+..+...++|+++|+||+|+.
T Consensus 49 ~~~~~iiDtpG~~~~~-------~~~~-~~~~~~d~il~v~d~~~~~~~~~~-----~~~~~~~~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 49 IPGITFIDTPGHEAFT-------NMRA-RGASLTDIAILVVAADDGVMPQTI-----EAIKLAKAANVPFIVALNKIDKP 115 (168)
T ss_pred cceEEEEeCCCcHHHH-------HHHH-HHHhhcCEEEEEEECCCCccHHHH-----HHHHHHHHcCCCEEEEEEceecc
Confidence 4789999999986542 1111 112457999999999876544332 23344556789999999999987
Q ss_pred ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (426)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~ 313 (426)
.... ..+...+..+... ....+....+++++||++|.|+.+++++|.+...
T Consensus 116 ~~~~-~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 116 NANP-ERVKNELSELGLQ-----------------GEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred cccH-HHHHHHHHHhhcc-----------------ccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 5321 1122222111000 0001223467999999999999999999987653
No 40
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=2.5e-17 Score=167.78 Aligned_cols=164 Identities=24% Similarity=0.334 Sum_probs=104.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
-|+|+|.||||||||||+|++.. |.++.+|++| +.|+-|++..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak-------------~kIa~ypfTT------------------l~PnlG~v~~------ 202 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK-------------PKIANYHFTT------------------LVPNLGVVET------ 202 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC-------------CccccCCcce------------------eceEEEEEEE------
Confidence 89999999999999999999875 2356677776 1223333321
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCCCC--CchhhhhhHHHHHHHH
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSIL 227 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~~~--~~~~~~~~~l~~~~~l 227 (426)
..+..++|+||||+.+...+ ..++....+.+ ..++++|+|||++... .+..-. ..+...+
T Consensus 203 ------------~~~~~~~laD~PGliega~~~~gLg~~fLrhi--er~~llI~VID~s~~~~~dp~e~~---~~i~~EL 265 (424)
T PRK12297 203 ------------DDGRSFVMADIPGLIEGASEGVGLGHQFLRHI--ERTRVIVHVIDMSGSEGRDPIEDY---EKINKEL 265 (424)
T ss_pred ------------eCCceEEEEECCCCcccccccchHHHHHHHHH--hhCCEEEEEEeCCccccCChHHHH---HHHHHHH
Confidence 12468999999999764221 12233222222 3479999999986531 221111 1122222
Q ss_pred h-----hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354 228 Y-----KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 228 ~-----~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~ 302 (426)
. ..++|.|||+||+|+..... ..+.+. . .+. .+++++||++|+|+.
T Consensus 266 ~~y~~~L~~kP~IVV~NK~DL~~~~e---~l~~l~---~----------------------~l~-~~i~~iSA~tgeGI~ 316 (424)
T PRK12297 266 KLYNPRLLERPQIVVANKMDLPEAEE---NLEEFK---E----------------------KLG-PKVFPISALTGQGLD 316 (424)
T ss_pred hhhchhccCCcEEEEEeCCCCcCCHH---HHHHHH---H----------------------HhC-CcEEEEeCCCCCCHH
Confidence 2 24789999999999843321 111111 1 112 469999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 014354 303 AYFKAVEESAQEFME 317 (426)
Q Consensus 303 ~l~~~l~~~~~~~~~ 317 (426)
+|+++|.+.+...++
T Consensus 317 eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 317 ELLYAVAELLEETPE 331 (424)
T ss_pred HHHHHHHHHHHhCcc
Confidence 999999988776543
No 41
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.74 E-value=4.3e-17 Score=147.96 Aligned_cols=162 Identities=14% Similarity=0.092 Sum_probs=96.4
Q ss_pred CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc
Q 014354 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT 143 (426)
Q Consensus 64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~ 143 (426)
.+..+.+.|+|+|++|+|||||+|+|++..... .++..++++ ++ ..+.
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~-----------~~~~~~~~t----~~-----------------~~~~ 60 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLA-----------RTSKTPGRT----QL-----------------INFF 60 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcc-----------cccCCCCcc----eE-----------------EEEE
Confidence 344677899999999999999999999874211 122222221 00 0000
Q ss_pred ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccch----hchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhh
Q 014354 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW----SASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMS 218 (426)
Q Consensus 144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~----~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~ 218 (426)
. .+.++.||||||+...... ......+...++. ..++++++|+|+..+......
T Consensus 61 -----~--------------~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-- 119 (179)
T TIGR03598 61 -----E--------------VNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-- 119 (179)
T ss_pred -----E--------------eCCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH--
Confidence 0 0136899999997543110 0111112223332 236899999999876655442
Q ss_pred hHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccC
Q 014354 219 NMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG 298 (426)
Q Consensus 219 ~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g 298 (426)
..+..+...++|+++|+||+|+............++.... ......++|++||++|
T Consensus 120 ---~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~---------------------~~~~~~~v~~~Sa~~g 175 (179)
T TIGR03598 120 ---EMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALK---------------------KDADDPSVQLFSSLKK 175 (179)
T ss_pred ---HHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHh---------------------hccCCCceEEEECCCC
Confidence 2234455678999999999999876544333333322111 1222357999999999
Q ss_pred CCHH
Q 014354 299 AGIE 302 (426)
Q Consensus 299 ~gv~ 302 (426)
+|++
T Consensus 176 ~gi~ 179 (179)
T TIGR03598 176 TGID 179 (179)
T ss_pred CCCC
Confidence 9973
No 42
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.74 E-value=2.6e-17 Score=144.98 Aligned_cols=113 Identities=22% Similarity=0.317 Sum_probs=72.8
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~ 245 (426)
..+.||||||+.++.............+....+|++++|+|+....... .....+...++|+|+|+||+|+..
T Consensus 43 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-------~~~~~~~~~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 43 KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL-------YLTLQLLELGLPVVVALNMIDEAE 115 (158)
T ss_pred eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH-------HHHHHHHHcCCCEEEEEehhhhcc
Confidence 5789999999987643322222222223224689999999997632211 122234456899999999999976
Q ss_pred hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354 246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (426)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~ 311 (426)
..........+. . . ...+++++||++|.|+..++.+|...
T Consensus 116 ~~~~~~~~~~~~---~----------------------~-~~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 116 KRGIKIDLDKLS---E----------------------L-LGVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred cccchhhHHHHH---H----------------------h-hCCCeEEEEccCCCCHHHHHHHHHHH
Confidence 543221111111 0 0 13579999999999999999998765
No 43
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.74 E-value=1.1e-17 Score=149.21 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=68.2
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh---hccCCeEEEEecC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKT 241 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~---~~~~P~IlVlNKi 241 (426)
+..+.+|||||+..+. .+...+ ...++++++|+|+..... +..........+. ..++|+++|+||+
T Consensus 49 ~~~~~l~Dt~G~~~~~-------~~~~~~-~~~~~~~v~vvd~~~~~~---~~~~~~~~~~~~~~~~~~~~p~ilv~NK~ 117 (167)
T cd04160 49 NARLKFWDLGGQESLR-------SLWDKY-YAECHAIIYVIDSTDRER---FEESKSALEKVLRNEALEGVPLLILANKQ 117 (167)
T ss_pred CEEEEEEECCCChhhH-------HHHHHH-hCCCCEEEEEEECchHHH---HHHHHHHHHHHHhChhhcCCCEEEEEEcc
Confidence 4789999999997642 111111 245799999999865321 1111111111111 2479999999999
Q ss_pred CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354 242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (426)
Q Consensus 242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~ 310 (426)
|+............+..... . ......+++++||++|.|+++++++|.+
T Consensus 118 D~~~~~~~~~~~~~~~~~~~--------------~------~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 118 DLPDALSVEEIKEVFQDKAE--------------E------IGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred ccccCCCHHHHHHHhccccc--------------c------ccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 98764322222111110000 0 0012357999999999999999999864
No 44
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=2.4e-17 Score=144.70 Aligned_cols=111 Identities=24% Similarity=0.276 Sum_probs=73.7
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHH--HhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~--~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiD 242 (426)
+..+.||||||+.+... .....+.... ....+|++++|+|+......... .....+...+.|+++|+||+|
T Consensus 44 ~~~~~i~DtpG~~~~~~--~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-----~~~~~~~~~~~piiiv~nK~D 116 (157)
T cd01894 44 GREFILIDTGGIEPDDE--GISKEIREQAELAIEEADVILFVVDGREGLTPADE-----EIAKYLRKSKKPVILVVNKVD 116 (157)
T ss_pred CeEEEEEECCCCCCchh--HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-----HHHHHHHhcCCCEEEEEECcc
Confidence 46789999999987521 1222222221 12447999999999876554331 233445566899999999999
Q ss_pred CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (426)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~ 311 (426)
+...... ...+. . ....+++++||++|.|+++++++|.+.
T Consensus 117 ~~~~~~~---~~~~~-------------------------~-~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 117 NIKEEDE---AAEFY-------------------------S-LGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred cCChHHH---HHHHH-------------------------h-cCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 9876532 11110 0 122368999999999999999998764
No 45
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=2.2e-17 Score=166.48 Aligned_cols=168 Identities=20% Similarity=0.309 Sum_probs=122.4
Q ss_pred CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc
Q 014354 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT 143 (426)
Q Consensus 64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~ 143 (426)
...+++|+|.|+|+...||||||.+|.+..++.+..+.|-..- |+...
T Consensus 148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhI--------------------------------GAF~V 195 (683)
T KOG1145|consen 148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHI--------------------------------GAFTV 195 (683)
T ss_pred hcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCcccee--------------------------------ceEEE
Confidence 4567899999999999999999999999886643322221111 11111
Q ss_pred ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (426)
Q Consensus 144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~ 223 (426)
+ + ..+..+.|+|||||.-|...++.|. .-.|++|+||-+..|+-+++ +.+
T Consensus 196 ~-------~----------p~G~~iTFLDTPGHaAF~aMRaRGA--------~vtDIvVLVVAadDGVmpQT-----~Ea 245 (683)
T KOG1145|consen 196 T-------L----------PSGKSITFLDTPGHAAFSAMRARGA--------NVTDIVVLVVAADDGVMPQT-----LEA 245 (683)
T ss_pred e-------c----------CCCCEEEEecCCcHHHHHHHHhccC--------ccccEEEEEEEccCCccHhH-----HHH
Confidence 1 1 2346889999999977643333333 33699999999999999988 566
Q ss_pred HHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 224 ~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
....+..+.|+|+++||||..... ..+.+ +.|.. .+.+.+.+.+.+++|++||++|+|++.
T Consensus 246 IkhAk~A~VpiVvAinKiDkp~a~-pekv~---~eL~~---------------~gi~~E~~GGdVQvipiSAl~g~nl~~ 306 (683)
T KOG1145|consen 246 IKHAKSANVPIVVAINKIDKPGAN-PEKVK---RELLS---------------QGIVVEDLGGDVQVIPISALTGENLDL 306 (683)
T ss_pred HHHHHhcCCCEEEEEeccCCCCCC-HHHHH---HHHHH---------------cCccHHHcCCceeEEEeecccCCChHH
Confidence 677888999999999999977543 11222 22222 266777888999999999999999999
Q ss_pred HHHHHHHHH
Q 014354 304 YFKAVEESA 312 (426)
Q Consensus 304 l~~~l~~~~ 312 (426)
|.+++.-.+
T Consensus 307 L~eaill~A 315 (683)
T KOG1145|consen 307 LEEAILLLA 315 (683)
T ss_pred HHHHHHHHH
Confidence 999886554
No 46
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.74 E-value=1e-16 Score=147.12 Aligned_cols=120 Identities=21% Similarity=0.232 Sum_probs=76.1
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiD 242 (426)
.+..+.||||||+..+ +...+. ...+|++++|+|+..+....... .+......++|+++|+||+|
T Consensus 66 ~~~~~~i~DtpG~~~~---------~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~-----~~~~~~~~~~~~iiv~NK~D 131 (192)
T cd01889 66 ENLQITLVDCPGHASL---------IRTIIGGAQIIDLMLLVVDATKGIQTQTAE-----CLVIGEILCKKLIVVLNKID 131 (192)
T ss_pred cCceEEEEECCCcHHH---------HHHHHHHHhhCCEEEEEEECCCCccHHHHH-----HHHHHHHcCCCEEEEEECcc
Confidence 3578999999998442 122222 23479999999998876544321 11122334789999999999
Q ss_pred CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhh-hhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDE-FYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
+..........+.+.... ...+.. .+...+++++||++|.|+.+|+++|....+.
T Consensus 132 l~~~~~~~~~~~~~~~~l-----------------~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 132 LIPEEERERKIEKMKKKL-----------------QKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred cCCHHHHHHHHHHHHHHH-----------------HHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 986543322222222110 110101 1235789999999999999999999887653
No 47
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.73 E-value=2.9e-17 Score=158.25 Aligned_cols=170 Identities=21% Similarity=0.263 Sum_probs=115.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.-|+++|+|||||||||++++..+ |.+..+|+|| +.||-|++..
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~Ak-------------PKIadYpFTT------------------L~PnLGvV~~----- 203 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAK-------------PKIADYPFTT------------------LVPNLGVVRV----- 203 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcC-------------CcccCCcccc------------------ccCcccEEEe-----
Confidence 358999999999999999999987 5589999999 6678887763
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH-
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL- 227 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l- 227 (426)
..+..+++-|.||+++..... .++..+.+.+. .+-++++|||.+..-.. +.......+...+
T Consensus 204 -------------~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE--Rt~vL~hviD~s~~~~~-dp~~~~~~i~~EL~ 267 (369)
T COG0536 204 -------------DGGESFVVADIPGLIEGASEGVGLGLRFLRHIE--RTRVLLHVIDLSPIDGR-DPIEDYQTIRNELE 267 (369)
T ss_pred -------------cCCCcEEEecCcccccccccCCCccHHHHHHHH--hhheeEEEEecCcccCC-CHHHHHHHHHHHHH
Confidence 244679999999999974322 25565655553 35799999998754321 1111111122222
Q ss_pred ----hhccCCeEEEEecCCCCChH-hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354 228 ----YKTRLPLVLAFNKTDVAQHE-FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 228 ----~~~~~P~IlVlNKiDl~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~ 302 (426)
.-.++|.+||+||+|+...+ .+..+.+.+. ....+...++|||.+++|++
T Consensus 268 ~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~-------------------------~~~~~~~~~~ISa~t~~g~~ 322 (369)
T COG0536 268 KYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALA-------------------------EALGWEVFYLISALTREGLD 322 (369)
T ss_pred HhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHH-------------------------HhcCCCcceeeehhcccCHH
Confidence 23578999999999966554 3333322222 11222233339999999999
Q ss_pred HHHHHHHHHHHHHH
Q 014354 303 AYFKAVEESAQEFM 316 (426)
Q Consensus 303 ~l~~~l~~~~~~~~ 316 (426)
+|...+.+.+....
T Consensus 323 ~L~~~~~~~l~~~~ 336 (369)
T COG0536 323 ELLRALAELLEETK 336 (369)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999888877654
No 48
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.73 E-value=6.1e-17 Score=149.27 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=69.3
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC-eEEEEecCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTD 242 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P-~IlVlNKiD 242 (426)
++.++.|+||||+.++. ..+... ...+|++++|||+..+...++ ..++..+...++| +|+|+||+|
T Consensus 63 ~~~~i~~iDtPG~~~~~------~~~~~~--~~~~D~~ilVvda~~g~~~~~-----~~~~~~~~~~~~~~iIvviNK~D 129 (195)
T cd01884 63 ANRHYAHVDCPGHADYI------KNMITG--AAQMDGAILVVSATDGPMPQT-----REHLLLARQVGVPYIVVFLNKAD 129 (195)
T ss_pred CCeEEEEEECcCHHHHH------HHHHHH--hhhCCEEEEEEECCCCCcHHH-----HHHHHHHHHcCCCcEEEEEeCCC
Confidence 45789999999986531 112111 245899999999998877655 3345556677888 678999999
Q ss_pred CCChHhHHH-HHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354 243 VAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 243 l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~ 302 (426)
+.......+ +.+.+..+...+ +. ...++++|++||++|.++.
T Consensus 130 ~~~~~~~~~~~~~~i~~~l~~~--------------g~----~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 130 MVDDEELLELVEMEVRELLSKY--------------GF----DGDNTPIVRGSALKALEGD 172 (195)
T ss_pred CCCcHHHHHHHHHHHHHHHHHh--------------cc----cccCCeEEEeeCccccCCC
Confidence 975443222 223333222210 00 0135889999999999853
No 49
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.73 E-value=3.3e-17 Score=147.85 Aligned_cols=113 Identities=19% Similarity=0.286 Sum_probs=72.2
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl 243 (426)
....+.||||||+.++. ..+...+ ..+|++|+|+|+..+.....+ ..+..+...++|+|+|+||+|+
T Consensus 65 ~~~~~~l~Dt~G~~~~~------~~~~~~~--~~ad~~i~v~D~~~~~~~~~~-----~~~~~~~~~~~~iiiv~NK~Dl 131 (179)
T cd01890 65 QEYLLNLIDTPGHVDFS------YEVSRSL--AACEGALLLVDATQGVEAQTL-----ANFYLALENNLEIIPVINKIDL 131 (179)
T ss_pred CcEEEEEEECCCChhhH------HHHHHHH--HhcCeEEEEEECCCCccHhhH-----HHHHHHHHcCCCEEEEEECCCC
Confidence 44678899999997752 1222222 347999999999876554332 1122234568999999999998
Q ss_pred CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (426)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~ 313 (426)
..... ......+. .. ++ .....++++||++|.|+++++++|...++
T Consensus 132 ~~~~~-~~~~~~~~---~~--------------~~------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 132 PSADP-ERVKQQIE---DV--------------LG------LDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred CcCCH-HHHHHHHH---HH--------------hC------CCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 65321 11111111 10 00 12235899999999999999999987653
No 50
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.73 E-value=5.4e-17 Score=171.65 Aligned_cols=136 Identities=21% Similarity=0.324 Sum_probs=80.3
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~ 245 (426)
..+.||||||+..+. .+... ....+|++++|+|+..+..++++ ..+..+...++|.|+|+||+|+..
T Consensus 69 ~~l~~iDTpG~e~f~-------~l~~~-~~~~aD~~IlVvD~~~g~~~qt~-----e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 69 PGLLFIDTPGHEAFT-------NLRKR-GGALADLAILIVDINEGFKPQTQ-----EALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred CcEEEEECCCcHhHH-------HHHHH-HHhhCCEEEEEEECCcCCCHhHH-----HHHHHHHHcCCCEEEEEECCCccc
Confidence 468999999997652 11111 12457999999999988777663 234455667899999999999975
Q ss_pred hHhH---HHHHHHHHHHHHHhccc-cchhhhHH---HHhhh------hHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354 246 HEFA---LEWMQDFEVFQAAISSD-HSYTSTLT---NSLSL------ALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA 312 (426)
Q Consensus 246 ~~~~---~~~~~~~~~l~~~~~~~-~~~~~~~~---~~~~~------~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~ 312 (426)
.... ..+.+........++.+ ...+..+. ...+. .+.+|+...++|++||++|+|+++|+.+|....
T Consensus 136 ~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 136 GWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred hhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 2110 01111111111000000 00000000 11111 123566778999999999999999999887654
Q ss_pred HH
Q 014354 313 QE 314 (426)
Q Consensus 313 ~~ 314 (426)
..
T Consensus 216 ~~ 217 (590)
T TIGR00491 216 QQ 217 (590)
T ss_pred HH
Confidence 43
No 51
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.73 E-value=5.4e-17 Score=150.62 Aligned_cols=115 Identities=16% Similarity=0.201 Sum_probs=73.0
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCC-CCchhhhhhHHHHHHHHhhcc-CCeEEEEecCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRS-ANPMTFMSNMLYACSILYKTR-LPLVLAFNKTD 242 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~-~~~~~~~~~~l~~~~~l~~~~-~P~IlVlNKiD 242 (426)
..+.||||||+.++ +..++.. ..+|++++|+|+..+ .....+. .+..+...+ .|+|||+||+|
T Consensus 83 ~~i~~iDtPG~~~~---------~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~-----~l~~~~~~~~~~iiivvNK~D 148 (203)
T cd01888 83 RHVSFVDCPGHEIL---------MATMLSGAAVMDGALLLIAANEPCPQPQTSE-----HLAALEIMGLKHIIIVQNKID 148 (203)
T ss_pred cEEEEEECCChHHH---------HHHHHHhhhcCCEEEEEEECCCCCCCcchHH-----HHHHHHHcCCCcEEEEEEchh
Confidence 67899999997543 1122221 347999999999874 3333321 122233334 36899999999
Q ss_pred CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
+..........+.++.+... ......++|++||++|.|+++|+++|.+.+++
T Consensus 149 l~~~~~~~~~~~~i~~~~~~--------------------~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 149 LVKEEQALENYEQIKKFVKG--------------------TIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred ccCHHHHHHHHHHHHHHHhc--------------------cccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 98755333333333221110 01124679999999999999999999887765
No 52
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=4.1e-17 Score=169.99 Aligned_cols=162 Identities=23% Similarity=0.254 Sum_probs=102.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
..++|+|+|.||||||||+|+|++..... +...|+.+ ++.+. +.+.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~------------v~~~~gvT----~d~~~--------------~~~~---- 82 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAV------------VEDVPGVT----RDRVS--------------YDAE---- 82 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCccc------------ccCCCCCC----EeeEE--------------EEEE----
Confidence 44789999999999999999999865321 23333332 21110 0000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHH--HhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~--~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
..+..+.||||||+.... ..+...+.... ....+|++|+|+|+..+..... ..+..
T Consensus 83 ---------------~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-----~~i~~ 140 (472)
T PRK03003 83 ---------------WNGRRFTVVDTGGWEPDA--KGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-----EAVAR 140 (472)
T ss_pred ---------------ECCcEEEEEeCCCcCCcc--hhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-----HHHHH
Confidence 234578999999986421 11222222221 1235899999999998765433 22344
Q ss_pred HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
.+...++|+|+|+||+|+..... ... .+. . .+...++++||++|.|+.+|+
T Consensus 141 ~l~~~~~piilV~NK~Dl~~~~~--~~~-~~~---~-----------------------~g~~~~~~iSA~~g~gi~eL~ 191 (472)
T PRK03003 141 VLRRSGKPVILAANKVDDERGEA--DAA-ALW---S-----------------------LGLGEPHPVSALHGRGVGDLL 191 (472)
T ss_pred HHHHcCCCEEEEEECccCCccch--hhH-HHH---h-----------------------cCCCCeEEEEcCCCCCcHHHH
Confidence 55667899999999999865321 010 000 0 122346899999999999999
Q ss_pred HHHHHHHHH
Q 014354 306 KAVEESAQE 314 (426)
Q Consensus 306 ~~l~~~~~~ 314 (426)
++|...+++
T Consensus 192 ~~i~~~l~~ 200 (472)
T PRK03003 192 DAVLAALPE 200 (472)
T ss_pred HHHHhhccc
Confidence 999987755
No 53
>PRK04213 GTP-binding protein; Provisional
Probab=99.72 E-value=9.8e-17 Score=148.04 Aligned_cols=171 Identities=21% Similarity=0.207 Sum_probs=96.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+.++|+++|.+|||||||+|+|++.... +...|+++ +... ..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-------------~~~~~~~t----~~~~-----------------~~---- 49 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-------------VGKRPGVT----RKPN-----------------HY---- 49 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-------------cCCCCcee----eCce-----------------EE----
Confidence 4568999999999999999999986532 22223222 0000 00
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhc-----hHHHHHHHHH--hcCCcEEEEEEeCCCCCCchhhhh--
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-----SGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMS-- 218 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~-----~~~~l~~~~~--~~~~d~vl~VVDa~~~~~~~~~~~-- 218 (426)
...++.+|||||+........ ....+...+. ...++++++|+|+.........|.
T Consensus 50 ----------------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~ 113 (201)
T PRK04213 50 ----------------DWGDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGR 113 (201)
T ss_pred ----------------eecceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccC
Confidence 012689999999743211111 1111122222 134689999999865432211110
Q ss_pred ----hHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhc--CCceEE
Q 014354 219 ----NMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK--NLKSVG 292 (426)
Q Consensus 219 ----~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~vv~ 292 (426)
........+...++|+++|+||+|+.... ......+. . .++. ...+. ..++++
T Consensus 114 ~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~---~--------------~~~~--~~~~~~~~~~~~~ 172 (201)
T PRK04213 114 GEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEIA---E--------------RLGL--YPPWRQWQDIIAP 172 (201)
T ss_pred CCcHHHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHHH---H--------------HhcC--CccccccCCcEEE
Confidence 01122333445689999999999997644 11111111 1 1110 00010 136899
Q ss_pred eecccCCCHHHHHHHHHHHHHH
Q 014354 293 VSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 293 vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
+||++| |+++++++|...+++
T Consensus 173 ~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 173 ISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred EecccC-CHHHHHHHHHHhhcC
Confidence 999999 999999999887654
No 54
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.72 E-value=5.5e-17 Score=167.64 Aligned_cols=157 Identities=21% Similarity=0.263 Sum_probs=102.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
+.+++|+|+|.||||||||+|+|++..... ++..|++| ++... ..+.
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------v~~~~gtT----~d~~~--------------~~i~--- 259 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAI------------VTDIAGTT----RDVIE--------------EHIN--- 259 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcc------------cCCCCCcc----cccEE--------------EEEE---
Confidence 355789999999999999999999875432 44455554 22110 0000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHH-HHHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI-ITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~-l~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
..+..+.||||||+.++. ...... +...+ ....+|++++|+|++....... ...+
T Consensus 260 ----------------~~g~~i~l~DT~G~~~~~--~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~-----~~~l 316 (449)
T PRK05291 260 ----------------LDGIPLRLIDTAGIRETD--DEVEKIGIERSREAIEEADLVLLVLDASEPLTEED-----DEIL 316 (449)
T ss_pred ----------------ECCeEEEEEeCCCCCCCc--cHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhH-----HHHH
Confidence 134678999999997642 111111 11111 1245799999999977654322 1112
Q ss_pred HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
.. ..+.|+++|+||+|+....... . ....+++++||++|.|+++|
T Consensus 317 ~~--~~~~piiiV~NK~DL~~~~~~~------~---------------------------~~~~~~i~iSAktg~GI~~L 361 (449)
T PRK05291 317 EE--LKDKPVIVVLNKADLTGEIDLE------E---------------------------ENGKPVIRISAKTGEGIDEL 361 (449)
T ss_pred Hh--cCCCCcEEEEEhhhccccchhh------h---------------------------ccCCceEEEEeeCCCCHHHH
Confidence 11 4578999999999997643211 0 12346899999999999999
Q ss_pred HHHHHHHHHH
Q 014354 305 FKAVEESAQE 314 (426)
Q Consensus 305 ~~~l~~~~~~ 314 (426)
+++|.+.+..
T Consensus 362 ~~~L~~~l~~ 371 (449)
T PRK05291 362 REAIKELAFG 371 (449)
T ss_pred HHHHHHHHhh
Confidence 9999988765
No 55
>PRK09866 hypothetical protein; Provisional
Probab=99.72 E-value=2.4e-16 Score=163.74 Aligned_cols=118 Identities=16% Similarity=0.064 Sum_probs=79.1
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhcc--CCeEEEEecCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTR--LPLVLAFNKTD 242 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~--~P~IlVlNKiD 242 (426)
..+++|+||||+..+.. ..++..+.+.+ ..+|+|+||||+.......+ ..++..+.+.+ .|+++|+||+|
T Consensus 229 ~~QIIFVDTPGIhk~~~-~~L~k~M~eqL--~eADvVLFVVDat~~~s~~D-----eeIlk~Lkk~~K~~PVILVVNKID 300 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQ-PHLQKMLNQQL--ARASAVLAVLDYTQLKSISD-----EEVREAILAVGQSVPLYVLVNKFD 300 (741)
T ss_pred cCCEEEEECCCCCCccc-hHHHHHHHHHH--hhCCEEEEEEeCCCCCChhH-----HHHHHHHHhcCCCCCEEEEEEccc
Confidence 47999999999987521 22444555543 45799999999988766554 23445566666 49999999999
Q ss_pred CCChHh--HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354 243 VAQHEF--ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (426)
Q Consensus 243 l~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~ 310 (426)
+.+... ...+...+..... .....+..+|||||++|.|+..|++.|..
T Consensus 301 l~dreeddkE~Lle~V~~~L~--------------------q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 301 QQDRNSDDADQVRALISGTLM--------------------KGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCCcccchHHHHHHHHHHHHH--------------------hcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 975321 1122222211100 01234678999999999999999999976
No 56
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.72 E-value=6.6e-17 Score=142.64 Aligned_cols=112 Identities=15% Similarity=0.124 Sum_probs=64.8
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~ 245 (426)
..+.+|||||+.++. .+...+. ..++++++|+|.....+......-...+.......++|+++|+||+|+..
T Consensus 49 ~~~~i~Dt~G~~~~~-------~l~~~~~-~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 49 CLLDILDTAGQEEYS-------AMRDQYM-RTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred EEEEEEECCCCcchH-------HHHHHHH-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 457789999987652 2222221 23688888888764321111100001111111235789999999999976
Q ss_pred hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354 246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (426)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~ 311 (426)
.... ......+.. . ...+++++||++|.|+.+++.+|.+.
T Consensus 121 ~~~~---~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 121 RTVS---SRQGQDLAK---------------------S--YGIPYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred ceec---HHHHHHHHH---------------------H--hCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 3211 111111110 1 12479999999999999999998764
No 57
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.72 E-value=4.5e-17 Score=145.48 Aligned_cols=167 Identities=17% Similarity=0.175 Sum_probs=96.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+++|.+|||||||+++|++..........+.... ... +...
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--------~~~-----------------------~~~~------ 44 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY--------SAT-----------------------VTVD------ 44 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee--------EEE-----------------------EEEC------
Confidence 689999999999999999999875322111110000 000 0000
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-- 228 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-- 228 (426)
.....+.+|||||+.++..... .....+|++++|+|+.... .+......++..+.
T Consensus 45 ------------~~~~~l~~~D~~g~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~ 101 (171)
T cd00157 45 ------------GKQVNLGLWDTAGQEEYDRLRP--------LSYPNTDVFLICFSVDSPS---SFENVKTKWIPEIRHY 101 (171)
T ss_pred ------------CEEEEEEEEeCCCcccccccch--------hhcCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhh
Confidence 1335789999999987521111 1113579999999987532 22222222222222
Q ss_pred hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l 308 (426)
..++|+++|+||+|+........+. . . ....+....+..+...++..+++++||++|.|+.+++.+|
T Consensus 102 ~~~~p~ivv~nK~Dl~~~~~~~~~~---~-------~---~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 168 (171)
T cd00157 102 CPNVPIILVGTKIDLRDDENTLKKL---E-------K---GKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEA 168 (171)
T ss_pred CCCCCEEEEEccHHhhhchhhhhhc---c-------c---CCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHH
Confidence 2369999999999998765332111 0 0 0000001111112233444589999999999999999988
Q ss_pred HH
Q 014354 309 EE 310 (426)
Q Consensus 309 ~~ 310 (426)
.+
T Consensus 169 ~~ 170 (171)
T cd00157 169 IR 170 (171)
T ss_pred hh
Confidence 64
No 58
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.72 E-value=4.3e-17 Score=167.91 Aligned_cols=159 Identities=25% Similarity=0.273 Sum_probs=104.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+|+|.||||||||+|+|++...+. +...|+.+ ++.. .+.+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~------------v~~~~g~t----~d~~--------------~~~~~------- 43 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAI------------VSDTPGVT----RDRK--------------YGDAE------- 43 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcce------------ecCCCCcc----cCce--------------EEEEE-------
Confidence 48999999999999999999876331 33334333 2221 01111
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH--hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~--~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~ 228 (426)
..+..+.||||||+.... ......+..... ...+|++++|+|+..+....+ ..+...+.
T Consensus 44 ------------~~~~~~~liDTpG~~~~~--~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d-----~~i~~~l~ 104 (429)
T TIGR03594 44 ------------WGGREFILIDTGGIEEDD--DGLDKQIREQAEIAIEEADVILFVVDGREGLTPED-----EEIAKWLR 104 (429)
T ss_pred ------------ECCeEEEEEECCCCCCcc--hhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH-----HHHHHHHH
Confidence 234579999999985431 111122222221 144899999999998776654 23445566
Q ss_pred hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l 308 (426)
+.++|+++|+||+|+...... . ..+. ..++.+++++||++|.|+.++++++
T Consensus 105 ~~~~piilVvNK~D~~~~~~~--~-~~~~--------------------------~lg~~~~~~vSa~~g~gv~~ll~~i 155 (429)
T TIGR03594 105 KSGKPVILVANKIDGKKEDAV--A-AEFY--------------------------SLGFGEPIPISAEHGRGIGDLLDAI 155 (429)
T ss_pred HhCCCEEEEEECccCCccccc--H-HHHH--------------------------hcCCCCeEEEeCCcCCChHHHHHHH
Confidence 778999999999998865421 1 1110 1234579999999999999999999
Q ss_pred HHHHHH
Q 014354 309 EESAQE 314 (426)
Q Consensus 309 ~~~~~~ 314 (426)
...++.
T Consensus 156 ~~~l~~ 161 (429)
T TIGR03594 156 LELLPE 161 (429)
T ss_pred HHhcCc
Confidence 887754
No 59
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.72 E-value=6.9e-17 Score=154.50 Aligned_cols=169 Identities=20% Similarity=0.245 Sum_probs=115.0
Q ss_pred CCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCC
Q 014354 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGG 140 (426)
Q Consensus 61 ~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~ 140 (426)
........-..|+++|+|++|||||||+|++... .+..+|||| +.+..|
T Consensus 55 gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~s-------------eva~y~FTT------------------l~~VPG 103 (365)
T COG1163 55 GFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKS-------------EVADYPFTT------------------LEPVPG 103 (365)
T ss_pred cceEeccCCeEEEEEcCCCccHHHHHHHHhCCCc-------------cccccCcee------------------cccccc
Confidence 3344445567999999999999999999999873 478889988 233356
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhh
Q 014354 141 ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSN 219 (426)
Q Consensus 141 i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~ 219 (426)
++. .++.+++|+|+||+++..+.+ ..|.++.... ..||++++|+|+.......+....
T Consensus 104 ~l~-------------------Y~ga~IQild~Pgii~gas~g~grG~~vlsv~--R~ADlIiiVld~~~~~~~~~~i~~ 162 (365)
T COG1163 104 MLE-------------------YKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA--RNADLIIIVLDVFEDPHHRDIIER 162 (365)
T ss_pred eEe-------------------ecCceEEEEcCcccccCcccCCCCcceeeeee--ccCCEEEEEEecCCChhHHHHHHH
Confidence 655 377999999999999864322 2344444333 337999999999865542111111
Q ss_pred HH---------------------------------------------------------------HHHHHHh--hccCCe
Q 014354 220 ML---------------------------------------------------------------YACSILY--KTRLPL 234 (426)
Q Consensus 220 ~l---------------------------------------------------------------~~~~~l~--~~~~P~ 234 (426)
.+ .+.+.+. ..-+|.
T Consensus 163 ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~ 242 (365)
T COG1163 163 ELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPA 242 (365)
T ss_pred HHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeee
Confidence 10 0111111 235799
Q ss_pred EEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354 235 VLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (426)
Q Consensus 235 IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~ 313 (426)
++|+||+|+...+.+..+.+ . ...+++||..|.|+++|.+.|...+.
T Consensus 243 l~v~NKiD~~~~e~~~~l~~-----------------------------~---~~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 243 LYVVNKIDLPGLEELERLAR-----------------------------K---PNSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred EEEEecccccCHHHHHHHHh-----------------------------c---cceEEEecccCCCHHHHHHHHHHhhC
Confidence 99999999998654322211 1 25999999999999999999988754
No 60
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.72 E-value=4.9e-17 Score=149.17 Aligned_cols=170 Identities=19% Similarity=0.223 Sum_probs=99.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+|+|.+|||||||++++++..+..+ ..+.+...+... ..+. +.
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~-------------~~~~t~~~~~~~-----------------~~~~----~~- 46 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNG-------------NFIATVGIDFRN-----------------KVVT----VD- 46 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcc-------------CcCCcccceeEE-----------------EEEE----EC-
Confidence 689999999999999999988764321 111111110000 0000 00
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhc
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT 230 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~ 230 (426)
....++.||||||+..+. .+...+ ...+|++|+|+|+....+.... ...+..+......
T Consensus 47 ------------~~~~~~~i~Dt~G~~~~~-------~~~~~~-~~~ad~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~~ 105 (191)
T cd04112 47 ------------GVKVKLQIWDTAGQERFR-------SVTHAY-YRDAHALLLLYDITNKASFDNI-RAWLTEIKEYAQE 105 (191)
T ss_pred ------------CEEEEEEEEeCCCcHHHH-------HhhHHH-ccCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCC
Confidence 123578999999986541 111111 1347999999999764322111 1111112222234
Q ss_pred cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354 231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (426)
Q Consensus 231 ~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~ 310 (426)
++|+++|+||+|+....... ......+.. . + ..+++++||++|.|+.+++.+|.+
T Consensus 106 ~~piiiv~NK~Dl~~~~~~~--~~~~~~l~~---------------------~-~-~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 106 DVVIMLLGNKADMSGERVVK--REDGERLAK---------------------E-Y-GVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred CCcEEEEEEcccchhccccC--HHHHHHHHH---------------------H-c-CCeEEEEeCCCCCCHHHHHHHHHH
Confidence 78999999999997532110 011111110 1 1 257999999999999999999999
Q ss_pred HHHHHHhhhhh
Q 014354 311 SAQEFMETYKA 321 (426)
Q Consensus 311 ~~~~~~~~~~~ 321 (426)
.+......+|.
T Consensus 161 ~~~~~~~~~~~ 171 (191)
T cd04112 161 ELKHRKYEQPD 171 (191)
T ss_pred HHHHhccccCC
Confidence 98887665543
No 61
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.72 E-value=7.4e-17 Score=143.34 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=92.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+|+|++|||||||++++++..+.... +.+. .+... ....+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~--------------~~t~----~~~~~------------~~~~~~------- 44 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDY--------------DPTI----EDSYR------------KQIEID------- 44 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccc--------------CCch----hhhEE------------EEEEEC-------
Confidence 6899999999999999999987643211 1111 00000 000000
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhc
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT 230 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~ 230 (426)
.....+.+|||||+.++. .+...+ ...++.+++|+|+....+......-...+.......
T Consensus 45 ------------~~~~~l~i~Dt~g~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 104 (164)
T smart00173 45 ------------GEVCLLDILDTAGQEEFS-------AMRDQY-MRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRD 104 (164)
T ss_pred ------------CEEEEEEEEECCCcccch-------HHHHHH-HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 123578899999997752 111111 123688999999865322111110001111222234
Q ss_pred cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354 231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (426)
Q Consensus 231 ~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~ 310 (426)
++|+|+|+||+|+....... ......+. ..+ ..+++++||++|.|+.+++++|.+
T Consensus 105 ~~pii~v~nK~Dl~~~~~~~--~~~~~~~~----------------------~~~-~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 105 DVPIVLVGNKCDLESERVVS--TEEGKELA----------------------RQW-GCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred CCCEEEEEECccccccceEc--HHHHHHHH----------------------HHc-CCEEEEeecCCCCCHHHHHHHHHH
Confidence 78999999999987642110 00111110 111 267999999999999999999987
Q ss_pred HHH
Q 014354 311 SAQ 313 (426)
Q Consensus 311 ~~~ 313 (426)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 654
No 62
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.72 E-value=1e-16 Score=143.68 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCCCC-----CchhhhhhHHHHHHHHh-------hcc
Q 014354 165 HLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSA-----NPMTFMSNMLYACSILY-------KTR 231 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~~~-----~~~~~~~~~l~~~~~l~-------~~~ 231 (426)
+..+.||||||+.+.... ......+...+ ..+|++++|+|+.... ............+.... ..+
T Consensus 43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGNQFLAHI--RRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTA 120 (176)
T ss_pred CCeEEEEeccccchhhhcCCCccHHHHHHH--hccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhh
Confidence 578999999998653211 11111222222 3479999999997763 22111111111111111 147
Q ss_pred CCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354 232 LPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (426)
Q Consensus 232 ~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~ 311 (426)
+|+++|+||+|+........+. ... .......+++++||++|.|+.++++++...
T Consensus 121 ~p~ivv~NK~Dl~~~~~~~~~~--~~~-----------------------~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 121 KPVIYVLNKIDLDDAEELEEEL--VRE-----------------------LALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred CCeEEEEEchhcCchhHHHHHH--HHH-----------------------HhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 9999999999998766443332 000 012234679999999999999999988653
No 63
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.72 E-value=8.8e-17 Score=142.59 Aligned_cols=160 Identities=13% Similarity=0.127 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|+++|.+|||||||++++++..+.. ..+.+....... .+.+.
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~--------------~~~~t~~~~~~~----------------~~~~~------ 46 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVT--------------DYDPTIEDSYTK----------------QCEID------ 46 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCc--------------ccCCCccceEEE----------------EEEEC------
Confidence 589999999999999999999865322 111111000000 00000
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH-HHHHh
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA-CSILY 228 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~-~~~l~ 228 (426)
.....+.+|||||+.++. ......+ ..++++++|+|+....+... ....... .....
T Consensus 47 -------------~~~~~~~i~Dt~G~~~~~------~~~~~~~--~~~~~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~ 104 (164)
T cd04145 47 -------------GQWAILDILDTAGQEEFS------AMREQYM--RTGEGFLLVFSVTDRGSFEE-VDKFHTQILRVKD 104 (164)
T ss_pred -------------CEEEEEEEEECCCCcchh------HHHHHHH--hhCCEEEEEEECCCHHHHHH-HHHHHHHHHHHhC
Confidence 123578899999987752 1111222 23689999999875332111 1111111 11112
Q ss_pred hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l 308 (426)
..++|+|||+||+|+....... ......+. ..+ ..+++++||++|.|+.+++++|
T Consensus 105 ~~~~piiiv~NK~Dl~~~~~~~--~~~~~~~~----------------------~~~-~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 105 RDEFPMILVGNKADLEHQRKVS--REEGQELA----------------------RKL-KIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred CCCCCEEEEeeCccccccceec--HHHHHHHH----------------------HHc-CCcEEEeeCCCCCCHHHHHHHH
Confidence 3478999999999987643211 00111110 011 2579999999999999999999
Q ss_pred HHHH
Q 014354 309 EESA 312 (426)
Q Consensus 309 ~~~~ 312 (426)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 7653
No 64
>PRK11058 GTPase HflX; Provisional
Probab=99.72 E-value=1.9e-16 Score=162.21 Aligned_cols=166 Identities=22% Similarity=0.237 Sum_probs=98.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
.+.|+|+|.||||||||+|+|++..+. +...+++| ++.. ...+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~-------------v~~~~~tT----ld~~--------------~~~i~----- 240 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVY-------------AADQLFAT----LDPT--------------LRRID----- 240 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcee-------------eccCCCCC----cCCc--------------eEEEE-----
Confidence 368999999999999999999986532 33344443 1111 00000
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
......++||||||+.+..++..... +...+. ...+|++|+|+|+++...... .......+..+
T Consensus 241 -------------l~~~~~~~l~DTaG~~r~lp~~lve~-f~~tl~~~~~ADlIL~VvDaS~~~~~e~-l~~v~~iL~el 305 (426)
T PRK11058 241 -------------VADVGETVLADTVGFIRHLPHDLVAA-FKATLQETRQATLLLHVVDAADVRVQEN-IEAVNTVLEEI 305 (426)
T ss_pred -------------eCCCCeEEEEecCcccccCCHHHHHH-HHHHHHHhhcCCEEEEEEeCCCccHHHH-HHHHHHHHHHh
Confidence 01223788999999855311221111 222222 245899999999976432211 11111223333
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...++|+++|+||+|+...... . +.. . . .+...++.+||++|.|+++|+++
T Consensus 306 ~~~~~pvIiV~NKiDL~~~~~~--~---~~~-~----------------------~-~~~~~~v~ISAktG~GIdeL~e~ 356 (426)
T PRK11058 306 DAHEIPTLLVMNKIDMLDDFEP--R---IDR-D----------------------E-ENKPIRVWLSAQTGAGIPLLFQA 356 (426)
T ss_pred ccCCCCEEEEEEcccCCCchhH--H---HHH-H----------------------h-cCCCceEEEeCCCCCCHHHHHHH
Confidence 3457999999999999753210 0 100 0 0 11112588999999999999999
Q ss_pred HHHHHHH
Q 014354 308 VEESAQE 314 (426)
Q Consensus 308 l~~~~~~ 314 (426)
|.+.+..
T Consensus 357 I~~~l~~ 363 (426)
T PRK11058 357 LTERLSG 363 (426)
T ss_pred HHHHhhh
Confidence 9988754
No 65
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.71 E-value=1.5e-15 Score=149.25 Aligned_cols=235 Identities=17% Similarity=0.201 Sum_probs=132.2
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (426)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~ 144 (426)
...++.+|+|+|+||||||||+++|.......+.++.++..||... ......+ .+.++. ..+...+. ..+..
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~-~~~~~~~--~~~~~~----~~~~~~~~-~~~~~ 101 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSP-FTGGSIL--GDRTRM----QRLATDPG-AFIRS 101 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCC-cchhhhc--ccchhh----hhcccCCC-ceeee
Confidence 3456789999999999999999999998888889999999997541 1111111 122211 11111111 11111
Q ss_pred cc------cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhh
Q 014354 145 LN------LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMS 218 (426)
Q Consensus 145 ~~------~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~ 218 (426)
+. .++......+.++. ..+++++||||||..... ..+ ...+|.++++.+...+..-..+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~--~~g~D~viidT~G~~~~e------~~i-----~~~aD~i~vv~~~~~~~el~~~~- 167 (300)
T TIGR00750 102 MPTRGHLGGLSQATRELILLLD--AAGYDVIIVETVGVGQSE------VDI-----ANMADTFVVVTIPGTGDDLQGIK- 167 (300)
T ss_pred cCccccccchhHHHHHHHHHHH--hCCCCEEEEeCCCCchhh------hHH-----HHhhceEEEEecCCccHHHHHHH-
Confidence 10 11223344444443 357999999999975421 111 12357888776543221111111
Q ss_pred hHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhc-CCceEEeeccc
Q 014354 219 NMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK-NLKSVGVSSVS 297 (426)
Q Consensus 219 ~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~vv~vSA~~ 297 (426)
. ...++|.++|+||+|+............+..-... ....... ..+++++||++
T Consensus 168 ------~--~l~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~-----------------l~~~~~~~~~~v~~iSA~~ 222 (300)
T TIGR00750 168 ------A--GLMEIADIYVVNKADGEGATNVTIARLMLALALEE-----------------IRRREDGWRPPVLTTSAVE 222 (300)
T ss_pred ------H--HHhhhccEEEEEcccccchhHHHHHHHHHHHHHhh-----------------ccccccCCCCCEEEEEccC
Confidence 1 12478899999999998765322111111100000 0000001 24699999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhHHH---hHHHHHHHHHHHHHHHHHHHHHhhh
Q 014354 298 GAGIEAYFKAVEESAQEFMETYKADLD---KRRAEKQRLEEERQKENINKLRKDM 349 (426)
Q Consensus 298 g~gv~~l~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~e~~re~~~~~l~~e~ 349 (426)
|.|+.+|+++|.+...... ..... .......++.+.+++.++..+.+..
T Consensus 223 g~Gi~~L~~~i~~~~~~~~---~~~~l~~~R~~~~l~~a~~~l~~~l~~~~~~~~ 274 (300)
T TIGR00750 223 GRGIDELWDAIEEHKTFLT---ASGLLQEKRRQRSVEWLKKLVEEEVLKKVFANE 274 (300)
T ss_pred CCCHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 9999999999988754331 22222 2234455566677777777776544
No 66
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.71 E-value=7.9e-17 Score=151.30 Aligned_cols=193 Identities=20% Similarity=0.269 Sum_probs=117.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
....+|+++|.+|||||||+++++...+..... |.+ .++ ....+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~-------~ti-------g~~----------------------~~~~~ 54 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-------PTI-------GVE----------------------VHPLD 54 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccC-------Ccc-------cee----------------------EEEEE
Confidence 456799999999999999999988765432111 111 000 00000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
+.. ......+.||||||+..+. .+...+ -..++++|+|+|.....+... ...+...
T Consensus 55 ~~~------------~~~~~~l~i~Dt~G~~~~~-------~~~~~~-~~~~~~~ilvfD~~~~~s~~~----i~~w~~~ 110 (219)
T PLN03071 55 FFT------------NCGKIRFYCWDTAGQEKFG-------GLRDGY-YIHGQCAIIMFDVTARLTYKN----VPTWHRD 110 (219)
T ss_pred EEE------------CCeEEEEEEEECCCchhhh-------hhhHHH-cccccEEEEEEeCCCHHHHHH----HHHHHHH
Confidence 000 0123688999999997752 121111 134689999999876432221 1111111
Q ss_pred Hh--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 227 LY--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 227 l~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
+. ..++|++||+||+|+....... ..+. +. . ....+++++||++|.|+.++
T Consensus 111 i~~~~~~~piilvgNK~Dl~~~~v~~---~~~~-~~----------------------~-~~~~~~~e~SAk~~~~i~~~ 163 (219)
T PLN03071 111 LCRVCENIPIVLCGNKVDVKNRQVKA---KQVT-FH----------------------R-KKNLQYYEISAKSNYNFEKP 163 (219)
T ss_pred HHHhCCCCcEEEEEEchhhhhccCCH---HHHH-HH----------------------H-hcCCEEEEcCCCCCCCHHHH
Confidence 11 2468999999999986432110 0110 00 0 12357899999999999999
Q ss_pred HHHHHHHHHH--------HHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 014354 305 FKAVEESAQE--------FMETYKADLDKRRAEKQRLEEERQKENINKLR 346 (426)
Q Consensus 305 ~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~ 346 (426)
|.+|...+.. .++.+++++..........++.++++....+.
T Consensus 164 f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (219)
T PLN03071 164 FLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLP 213 (219)
T ss_pred HHHHHHHHHcCcchhcccccccCCcccCCCHHHHHHHHHHHHHHHhcCCC
Confidence 9999987754 34567777777777777777777766655544
No 67
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.71 E-value=6.8e-17 Score=149.13 Aligned_cols=123 Identities=15% Similarity=0.098 Sum_probs=74.5
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHH-HHHHHHhhccCCeEEEEecCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML-YACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l-~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
..+.||||||+..+. .+.. .....+|++|+|+|+....+.... ...+ .+.......++|+|||+||+|+.
T Consensus 47 ~~l~i~D~~G~~~~~-------~~~~-~~~~~ad~vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~ 117 (198)
T cd04147 47 LTLDILDTSGSYSFP-------AMRK-LSIQNSDAFALVYAVDDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSL 117 (198)
T ss_pred EEEEEEECCCchhhh-------HHHH-HHhhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEccccc
Confidence 578899999987652 1111 112457999999998753322111 1111 11221223579999999999997
Q ss_pred ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHHHhhhh
Q 014354 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYK 320 (426)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~~~~~ 320 (426)
............+. . ......+++++||++|.|+.+++++|.+.+....+.+|
T Consensus 118 ~~~~~v~~~~~~~~-~----------------------~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~ 170 (198)
T cd04147 118 EEERQVPAKDALST-V----------------------ELDWNCGFVETSAKDNENVLEVFKELLRQANLPYNLSP 170 (198)
T ss_pred cccccccHHHHHHH-H----------------------HhhcCCcEEEecCCCCCCHHHHHHHHHHHhhcccccch
Confidence 63211111000100 0 00112568999999999999999999998877666665
No 68
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.71 E-value=1.3e-16 Score=151.97 Aligned_cols=164 Identities=23% Similarity=0.301 Sum_probs=108.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..-|+++|+||||||||||+|+..+ |.|..+++|| +.|+-|.+..
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AK-------------pkVa~YaFTT------------------L~P~iG~v~y---- 240 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAK-------------PKVAHYAFTT------------------LRPHIGTVNY---- 240 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccC-------------Ccccccceee------------------eccccceeec----
Confidence 4468999999999999999999987 5588899998 3344443331
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccc-hhchHHHHHHHHHhcCCcEEEEEEeCCCCCC--chhhhhhHHHHHH
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFT-WSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACS 225 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~-~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~--~~~~~~~~l~~~~ 225 (426)
....++.+-|.||+++-.. ...++..+.+.+ ..|..++||||.+.... +.+........+.
T Consensus 241 --------------ddf~q~tVADiPGiI~GAh~nkGlG~~FLrHi--ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe 304 (366)
T KOG1489|consen 241 --------------DDFSQITVADIPGIIEGAHMNKGLGYKFLRHI--ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELE 304 (366)
T ss_pred --------------cccceeEeccCccccccccccCcccHHHHHHH--HhhceEEEEEECCCcccCCHHHHHHHHHHHHH
Confidence 1224589999999998632 334556555555 45689999999987632 2222211122222
Q ss_pred HHh--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 226 ILY--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 226 ~l~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
... -...|.+||+||+|+...+. .. +..|... ..+..+|++||++|+|+..
T Consensus 305 ~yek~L~~rp~liVaNKiD~~eae~--~~---l~~L~~~----------------------lq~~~V~pvsA~~~egl~~ 357 (366)
T KOG1489|consen 305 LYEKGLADRPALIVANKIDLPEAEK--NL---LSSLAKR----------------------LQNPHVVPVSAKSGEGLEE 357 (366)
T ss_pred HHhhhhccCceEEEEeccCchhHHH--HH---HHHHHHH----------------------cCCCcEEEeeeccccchHH
Confidence 222 35789999999999863321 11 2222221 1223599999999999999
Q ss_pred HHHHHHH
Q 014354 304 YFKAVEE 310 (426)
Q Consensus 304 l~~~l~~ 310 (426)
|++.|..
T Consensus 358 ll~~lr~ 364 (366)
T KOG1489|consen 358 LLNGLRE 364 (366)
T ss_pred HHHHHhh
Confidence 9988754
No 69
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.71 E-value=6.5e-17 Score=143.27 Aligned_cols=159 Identities=14% Similarity=0.167 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|+|+|.+|||||||++++++..+... ++.+. ++... ..+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~--------------~~~t~----~~~~~-------------~~~~~~----- 45 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEK--------------YDPTI----EDSYR-------------KQIEVD----- 45 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc--------------cCCch----hhhEE-------------EEEEEC-----
Confidence 5799999999999999999997654321 11111 00000 000000
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH-h
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL-Y 228 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l-~ 228 (426)
.....+.||||||+.++. .+...+ ...++++++|+|.....+... .......+... .
T Consensus 46 -------------~~~~~l~i~Dt~G~~~~~-------~~~~~~-~~~~~~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~ 103 (163)
T cd04136 46 -------------GQQCMLEILDTAGTEQFT-------AMRDLY-IKNGQGFVLVYSITSQSSFND-LQDLREQILRVKD 103 (163)
T ss_pred -------------CEEEEEEEEECCCccccc-------hHHHHH-hhcCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcC
Confidence 123567899999997752 122221 134688999999864322111 11111111111 1
Q ss_pred hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l 308 (426)
..++|+|+|+||+|+....... ......+. ..+. .+++++||++|.|+.+++.+|
T Consensus 104 ~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~~~-~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04136 104 TENVPMVLVGNKCDLEDERVVS--REEGQALA----------------------RQWG-CPFYETSAKSKINVDEVFADL 158 (163)
T ss_pred CCCCCEEEEEECccccccceec--HHHHHHHH----------------------HHcC-CeEEEecCCCCCCHHHHHHHH
Confidence 2468999999999987543211 01111111 1122 679999999999999999998
Q ss_pred HHH
Q 014354 309 EES 311 (426)
Q Consensus 309 ~~~ 311 (426)
.+.
T Consensus 159 ~~~ 161 (163)
T cd04136 159 VRQ 161 (163)
T ss_pred HHh
Confidence 764
No 70
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.71 E-value=4.8e-17 Score=146.52 Aligned_cols=160 Identities=16% Similarity=0.201 Sum_probs=92.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
...+|+++|++|||||||+++|++..... ..| +..+. .....
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~--------~~~-------t~g~~----------------------~~~~~- 54 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDT--------ISP-------TLGFQ----------------------IKTLE- 54 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC--------cCC-------ccccc----------------------eEEEE-
Confidence 44689999999999999999999863221 001 10000 00000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
..+..+.+|||||+..+. ......+ ..+|++++|+|+...............++...
T Consensus 55 ---------------~~~~~l~l~D~~G~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 111 (173)
T cd04154 55 ---------------YEGYKLNIWDVGGQKTLR------PYWRNYF--ESTDALIWVVDSSDRLRLDDCKRELKELLQEE 111 (173)
T ss_pred ---------------ECCEEEEEEECCCCHHHH------HHHHHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHhCh
Confidence 123678999999986541 1111122 35799999999876422111110011111111
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...+.|++||+||+|+.......++...+. . .. ......+++++||++|.|+++++++
T Consensus 112 ~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~---------------~~---~~~~~~~~~~~Sa~~g~gi~~l~~~ 169 (173)
T cd04154 112 RLAGATLLILANKQDLPGALSEEEIREALE----L---------------DK---ISSHHWRIQPCSAVTGEGLLQGIDW 169 (173)
T ss_pred hhcCCCEEEEEECcccccCCCHHHHHHHhC----c---------------cc---cCCCceEEEeccCCCCcCHHHHHHH
Confidence 235789999999999976432111111110 0 00 0012357999999999999999998
Q ss_pred HHH
Q 014354 308 VEE 310 (426)
Q Consensus 308 l~~ 310 (426)
+..
T Consensus 170 l~~ 172 (173)
T cd04154 170 LVD 172 (173)
T ss_pred Hhc
Confidence 753
No 71
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.71 E-value=5.9e-16 Score=141.82 Aligned_cols=170 Identities=15% Similarity=0.105 Sum_probs=102.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
....+.|+|+|.+|||||||+|+|++..... .++..++++ +.. .+.
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~-----------~~~~~~~~t----~~~-----------------~~~-- 66 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLA-----------RTSKTPGRT----QLI-----------------NFF-- 66 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcc-----------cccCCCCce----eEE-----------------EEE--
Confidence 3466789999999999999999999864211 011112111 000 000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccch----hchHHHHHHHHHhc-CCcEEEEEEeCCCCCCchhhhhhH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW----SASGAIITEAFAST-FPTVVTYVVDTPRSANPMTFMSNM 220 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~----~~~~~~l~~~~~~~-~~d~vl~VVDa~~~~~~~~~~~~~ 220 (426)
..+.++.||||||+...... ......+...+... ..+++++|+|+.........
T Consensus 67 -----------------~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~---- 125 (196)
T PRK00454 67 -----------------EVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL---- 125 (196)
T ss_pred -----------------ecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH----
Confidence 01258999999997542100 01111222223322 34688899998766544331
Q ss_pred HHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC
Q 014354 221 LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300 (426)
Q Consensus 221 l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g 300 (426)
.+...+...++|+++|+||+|+.+..........+..... .. ..+++++||++|.|
T Consensus 126 -~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~---------------------~~--~~~~~~~Sa~~~~g 181 (196)
T PRK00454 126 -QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALK---------------------FG--DDEVILFSSLKKQG 181 (196)
T ss_pred -HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHH---------------------hc--CCceEEEEcCCCCC
Confidence 1223345568999999999999876544333332321111 11 46799999999999
Q ss_pred HHHHHHHHHHHHHH
Q 014354 301 IEAYFKAVEESAQE 314 (426)
Q Consensus 301 v~~l~~~l~~~~~~ 314 (426)
+.++++.|...+.+
T Consensus 182 i~~l~~~i~~~~~~ 195 (196)
T PRK00454 182 IDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999876643
No 72
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.71 E-value=1.4e-16 Score=168.84 Aligned_cols=165 Identities=19% Similarity=0.269 Sum_probs=104.5
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (426)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~ 144 (426)
...++++|+|+|++|+|||||+++|.+..+..+.. ++.| .. -+...
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~-------------~GIT-~~-------------------ig~~~- 128 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEA-------------GGIT-QH-------------------IGAYH- 128 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccC-------------Ccee-ec-------------------ceEEE-
Confidence 35577899999999999999999999876443211 1111 00 01000
Q ss_pred cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
.. + .....+.||||||+..+.. +.. .....+|++++|+|+..+..++++ ..+
T Consensus 129 v~-~--------------~~~~~i~~iDTPGhe~F~~-------~r~-rga~~aDiaILVVda~dgv~~qT~-----e~i 180 (587)
T TIGR00487 129 VE-N--------------EDGKMITFLDTPGHEAFTS-------MRA-RGAKVTDIVVLVVAADDGVMPQTI-----EAI 180 (587)
T ss_pred EE-E--------------CCCcEEEEEECCCCcchhh-------HHH-hhhccCCEEEEEEECCCCCCHhHH-----HHH
Confidence 00 0 0123789999999987631 111 112457999999999988766653 334
Q ss_pred HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
..+...++|+|+++||+|+..... .++...+. ..+.....|....+++++||++|.|+.++
T Consensus 181 ~~~~~~~vPiIVviNKiDl~~~~~-e~v~~~L~------------------~~g~~~~~~~~~~~~v~iSAktGeGI~eL 241 (587)
T TIGR00487 181 SHAKAANVPIIVAINKIDKPEANP-DRVKQELS------------------EYGLVPEDWGGDTIFVPVSALTGDGIDEL 241 (587)
T ss_pred HHHHHcCCCEEEEEECcccccCCH-HHHHHHHH------------------HhhhhHHhcCCCceEEEEECCCCCChHHH
Confidence 455667899999999999964211 11111111 01111223444568999999999999999
Q ss_pred HHHHHH
Q 014354 305 FKAVEE 310 (426)
Q Consensus 305 ~~~l~~ 310 (426)
+++|..
T Consensus 242 l~~I~~ 247 (587)
T TIGR00487 242 LDMILL 247 (587)
T ss_pred HHhhhh
Confidence 999864
No 73
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.71 E-value=6.8e-17 Score=168.41 Aligned_cols=175 Identities=23% Similarity=0.329 Sum_probs=122.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
..|+++|.||+|||||+|+|+|.... |.+.|+.| +. +- -|.+.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~-------------VgNwpGvT-VE---kk--------------eg~~~------ 46 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQK-------------VGNWPGVT-VE---KK--------------EGKLK------ 46 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCce-------------ecCCCCee-EE---EE--------------EEEEE------
Confidence 45999999999999999999999854 55566554 11 10 12222
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~ 229 (426)
.++.++.++|.||+....+.+..+....+.+....+|++|.|||+++-..+ ++..-.+..
T Consensus 47 -------------~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRn-------LyltlQLlE 106 (653)
T COG0370 47 -------------YKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERN-------LYLTLQLLE 106 (653)
T ss_pred -------------ecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHH-------HHHHHHHHH
Confidence 245789999999999886665555656666667789999999999764332 333334667
Q ss_pred ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354 230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE 309 (426)
Q Consensus 230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~ 309 (426)
.++|+|+++|++|..++... .-+.+.|... =.+|++++||++|+|+++++..+.
T Consensus 107 ~g~p~ilaLNm~D~A~~~Gi---~ID~~~L~~~-----------------------LGvPVv~tvA~~g~G~~~l~~~i~ 160 (653)
T COG0370 107 LGIPMILALNMIDEAKKRGI---RIDIEKLSKL-----------------------LGVPVVPTVAKRGEGLEELKRAII 160 (653)
T ss_pred cCCCeEEEeccHhhHHhcCC---cccHHHHHHH-----------------------hCCCEEEEEeecCCCHHHHHHHHH
Confidence 89999999999998776532 1122222211 147899999999999999999998
Q ss_pred HHHHHHH----hhhhhHHHhHH
Q 014354 310 ESAQEFM----ETYKADLDKRR 327 (426)
Q Consensus 310 ~~~~~~~----~~~~~~~~~~~ 327 (426)
+..+... ..|+....+..
T Consensus 161 ~~~~~~~~~~~~~y~~~ie~~i 182 (653)
T COG0370 161 ELAESKTTPREVDYGEEIEEEI 182 (653)
T ss_pred HhccccccccccccchHHHHHH
Confidence 7655432 34555544333
No 74
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.71 E-value=7.8e-17 Score=144.90 Aligned_cols=157 Identities=18% Similarity=0.201 Sum_probs=91.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+++|.+|||||||+++|....+.. ..| +..++.. ...
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~--------------~~~-t~g~~~~-------------------~~~---- 49 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT--------------TIP-TVGFNVE-------------------TVT---- 49 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc--------------ccC-CcccceE-------------------EEE----
Confidence 45789999999999999999998654221 011 1101000 000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
.....+.||||||+..+. .+...+ -..++++|+|+|+....+.... ...+...+
T Consensus 50 ---------------~~~~~~~l~Dt~G~~~~~-------~~~~~~-~~~a~~ii~v~D~t~~~s~~~~---~~~~~~~~ 103 (168)
T cd04149 50 ---------------YKNVKFNVWDVGGQDKIR-------PLWRHY-YTGTQGLIFVVDSADRDRIDEA---RQELHRII 103 (168)
T ss_pred ---------------ECCEEEEEEECCCCHHHH-------HHHHHH-hccCCEEEEEEeCCchhhHHHH---HHHHHHHh
Confidence 134689999999996641 111111 1347999999999764322111 11111222
Q ss_pred h---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 228 ~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
. ..+.|++||+||+|+.......++...+. + .. ......+++++||++|.|+.++
T Consensus 104 ~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~-~------------------~~---~~~~~~~~~~~SAk~g~gv~~~ 161 (168)
T cd04149 104 NDREMRDALLLVFANKQDLPDAMKPHEIQEKLG-L------------------TR---IRDRNWYVQPSCATSGDGLYEG 161 (168)
T ss_pred cCHhhcCCcEEEEEECcCCccCCCHHHHHHHcC-C------------------Cc---cCCCcEEEEEeeCCCCCChHHH
Confidence 2 23589999999999864321111111110 0 00 0011236899999999999999
Q ss_pred HHHHHH
Q 014354 305 FKAVEE 310 (426)
Q Consensus 305 ~~~l~~ 310 (426)
+++|.+
T Consensus 162 ~~~l~~ 167 (168)
T cd04149 162 LTWLSS 167 (168)
T ss_pred HHHHhc
Confidence 999853
No 75
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.71 E-value=6.3e-17 Score=145.39 Aligned_cols=120 Identities=16% Similarity=0.152 Sum_probs=71.2
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh---hccCCeEEEEec
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNK 240 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~---~~~~P~IlVlNK 240 (426)
.+..+.||||||+.++. ......+ ..+|+++||+|++...+-.. ....+...+. ..+.|++||+||
T Consensus 41 ~~~~i~l~Dt~G~~~~~------~~~~~~~--~~ad~ii~V~D~s~~~s~~~---~~~~~~~~~~~~~~~~~piilv~NK 109 (169)
T cd04158 41 KNLKFTIWDVGGKHKLR------PLWKHYY--LNTQAVVFVVDSSHRDRVSE---AHSELAKLLTEKELRDALLLIFANK 109 (169)
T ss_pred CCEEEEEEECCCChhcc------hHHHHHh--ccCCEEEEEEeCCcHHHHHH---HHHHHHHHhcChhhCCCCEEEEEeC
Confidence 34688999999997642 1111112 34799999999875321111 1111122222 234899999999
Q ss_pred CCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh--hcCCceEEeecccCCCHHHHHHHHHHHHHHHHh
Q 014354 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEAYFKAVEESAQEFME 317 (426)
Q Consensus 241 iDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~~ 317 (426)
+|+............+. +. .. .....++++||++|.|+.+++++|.+.+.++.+
T Consensus 110 ~Dl~~~~~~~~~~~~~~-~~----------------------~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~~~ 165 (169)
T cd04158 110 QDVAGALSVEEMTELLS-LH----------------------KLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAGV 165 (169)
T ss_pred cCcccCCCHHHHHHHhC-Cc----------------------cccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhccc
Confidence 99864321111111110 00 00 012357899999999999999999988777654
No 76
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.70 E-value=1.7e-16 Score=140.51 Aligned_cols=161 Identities=16% Similarity=0.201 Sum_probs=91.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+++|++|||||||++++++..+..... .+. .+... ..+..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~--------------~~~----~~~~~-------------~~~~~------- 43 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYE--------------PTK----ADSYR-------------KKVVL------- 43 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccC--------------Ccc----hhhEE-------------EEEEE-------
Confidence 68999999999999999999876442111 010 00000 00000
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhc
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT 230 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~ 230 (426)
......+.||||||+.++. .+...+ ...++.+++|+|.....+-.....-...+.......
T Consensus 44 -----------~~~~~~~~i~D~~g~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 104 (164)
T cd04139 44 -----------DGEDVQLNILDTAGQEDYA-------AIRDNY-HRSGEGFLLVFSITDMESFTATAEFREQILRVKDDD 104 (164)
T ss_pred -----------CCEEEEEEEEECCChhhhh-------HHHHHH-hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 0133578999999987652 111111 134578888888754221110000001111111135
Q ss_pred cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354 231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (426)
Q Consensus 231 ~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~ 310 (426)
++|+++|+||+|+...... .......+.. . + ..+++++||++|.|+.++++++.+
T Consensus 105 ~~piiiv~NK~D~~~~~~~--~~~~~~~~~~---------------------~-~-~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 105 NVPLLLVGNKCDLEDKRQV--SSEEAANLAR---------------------Q-W-GVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred CCCEEEEEEcccccccccc--CHHHHHHHHH---------------------H-h-CCeEEEeeCCCCCCHHHHHHHHHH
Confidence 7999999999999762211 1111111111 1 1 257999999999999999999987
Q ss_pred HHH
Q 014354 311 SAQ 313 (426)
Q Consensus 311 ~~~ 313 (426)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 653
No 77
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.70 E-value=1.8e-16 Score=144.54 Aligned_cols=123 Identities=11% Similarity=0.131 Sum_probs=71.0
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl 243 (426)
.+..+.||||||+..+. .+...+ ...+|++++|+|+...............+.......++|++||+||+|+
T Consensus 50 ~~~~l~l~Dt~G~~~~~-------~~~~~~-~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~ 121 (183)
T cd04152 50 KGITFHFWDVGGQEKLR-------PLWKSY-TRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDL 121 (183)
T ss_pred CceEEEEEECCCcHhHH-------HHHHHH-hccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCc
Confidence 34678999999986541 122221 1347999999998764221111111111222223457999999999998
Q ss_pred CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHH
Q 014354 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF 315 (426)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~ 315 (426)
........+. .+..++.. ......+++++||++|.|+.+++++|.+.+.+.
T Consensus 122 ~~~~~~~~~~-~~~~~~~~--------------------~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~ 172 (183)
T cd04152 122 PNALSVSEVE-KLLALHEL--------------------SASTPWHVQPACAIIGEGLQEGLEKLYEMILKR 172 (183)
T ss_pred cccCCHHHHH-HHhCcccc--------------------CCCCceEEEEeecccCCCHHHHHHHHHHHHHHH
Confidence 6432111111 11000000 001124689999999999999999998777543
No 78
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.70 E-value=1.2e-16 Score=173.15 Aligned_cols=164 Identities=19% Similarity=0.263 Sum_probs=105.8
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (426)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~ 144 (426)
...++++|+|+|++|+|||||+++|.+..+..+.. ++.| .. .+.+.
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~-------------~GIT-~~-------------------iga~~- 331 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEA-------------GGIT-QH-------------------IGAYQ- 331 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccc-------------Ccee-ee-------------------ccEEE-
Confidence 35688999999999999999999998765432211 0000 00 01100
Q ss_pred cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
.. ..+..+.||||||+..+.. +.. .....+|++|+|||+..+..++++ ..+
T Consensus 332 v~----------------~~~~~ItfiDTPGhe~F~~-------m~~-rga~~aDiaILVVdAddGv~~qT~-----e~i 382 (787)
T PRK05306 332 VE----------------TNGGKITFLDTPGHEAFTA-------MRA-RGAQVTDIVVLVVAADDGVMPQTI-----EAI 382 (787)
T ss_pred EE----------------ECCEEEEEEECCCCccchh-------HHH-hhhhhCCEEEEEEECCCCCCHhHH-----HHH
Confidence 00 1246789999999987621 111 112447999999999988776653 334
Q ss_pred HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
..+...++|+|+|+||+|+.... ...+...+.. .+...+.|....++|++||++|.|+.+|
T Consensus 383 ~~a~~~~vPiIVviNKiDl~~a~-~e~V~~eL~~------------------~~~~~e~~g~~vp~vpvSAktG~GI~eL 443 (787)
T PRK05306 383 NHAKAAGVPIIVAINKIDKPGAN-PDRVKQELSE------------------YGLVPEEWGGDTIFVPVSAKTGEGIDEL 443 (787)
T ss_pred HHHHhcCCcEEEEEECccccccC-HHHHHHHHHH------------------hcccHHHhCCCceEEEEeCCCCCCchHH
Confidence 55666789999999999996532 1112222111 0111223444578999999999999999
Q ss_pred HHHHHH
Q 014354 305 FKAVEE 310 (426)
Q Consensus 305 ~~~l~~ 310 (426)
+++|..
T Consensus 444 le~I~~ 449 (787)
T PRK05306 444 LEAILL 449 (787)
T ss_pred HHhhhh
Confidence 999875
No 79
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.70 E-value=2.8e-16 Score=137.73 Aligned_cols=154 Identities=19% Similarity=0.283 Sum_probs=96.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
+.+|+++|++|||||||+|+|++..... ....+.++ ++.. ...+.
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~------------~~~~~~~~----~~~~--------------~~~~~----- 45 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAI------------VSDIAGTT----RDVI--------------EESID----- 45 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEe------------ccCCCCCc----cceE--------------EEEEE-----
Confidence 3579999999999999999999875321 12222222 0000 00000
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
..+..+.+|||||+.+....... ..+.... ....++++++|+|+.......... ...
T Consensus 46 --------------~~~~~~~i~DtpG~~~~~~~~~~-~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-----~~~-- 103 (157)
T cd04164 46 --------------IGGIPVRLIDTAGIRETEDEIEK-IGIERAREAIEEADLVLFVIDASRGLDEEDLE-----ILE-- 103 (157)
T ss_pred --------------eCCEEEEEEECCCcCCCcchHHH-HHHHHHHHHHhhCCEEEEEEECCCCCCHHHHH-----HHH--
Confidence 12357899999998775321111 1111111 123579999999998754433211 111
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...+.|+++|+||+|+...... . ......+++++||.+|.|+.+++++
T Consensus 104 ~~~~~~vi~v~nK~D~~~~~~~------~--------------------------~~~~~~~~~~~Sa~~~~~v~~l~~~ 151 (157)
T cd04164 104 LPADKPIIVVLNKSDLLPDSEL------L--------------------------SLLAGKPIIAISAKTGEGLDELKEA 151 (157)
T ss_pred hhcCCCEEEEEEchhcCCcccc------c--------------------------cccCCCceEEEECCCCCCHHHHHHH
Confidence 1457999999999999875532 0 0123467999999999999999999
Q ss_pred HHHH
Q 014354 308 VEES 311 (426)
Q Consensus 308 l~~~ 311 (426)
|...
T Consensus 152 l~~~ 155 (157)
T cd04164 152 LLEL 155 (157)
T ss_pred HHHh
Confidence 8764
No 80
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.70 E-value=2.4e-16 Score=159.79 Aligned_cols=85 Identities=18% Similarity=0.078 Sum_probs=67.0
Q ss_pred ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH-HHHHH
Q 014354 230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA-YFKAV 308 (426)
Q Consensus 230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~-l~~~l 308 (426)
..+|+|+|+||+|...... ....+. ++ ++..++++||+.+.++.. +++.+
T Consensus 216 t~KPvI~VlNK~D~~~~~~---~l~~i~-------------------------~~-~~~~vvpISA~~e~~l~~~l~~~i 266 (396)
T PRK09602 216 ISKPMVIAANKADLPPAEE---NIERLK-------------------------EE-KYYIVVPTSAEAELALRRAAKAGL 266 (396)
T ss_pred cCCCEEEEEEchhcccchH---HHHHHH-------------------------hc-CCCcEEEEcchhhhhHHHHHHHhH
Confidence 4589999999999764321 111111 12 456799999999999999 89999
Q ss_pred HHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 014354 309 EESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLR 346 (426)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~ 346 (426)
.+.+|+.+++||.+..++.+.+ +.|.+| ++|..+.
T Consensus 267 ~~~lp~~p~~~~~d~ltd~~~r--~~E~IR-k~l~~~g 301 (396)
T PRK09602 267 IDYIPGDSDFEILGELSEKQKK--ALEYIR-EVLKKYG 301 (396)
T ss_pred HhhCCCCCccCccccCCHHHHH--HHHHHH-HHHHHhC
Confidence 9999999999999998988877 888888 8887654
No 81
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.70 E-value=1.3e-16 Score=142.03 Aligned_cols=114 Identities=10% Similarity=0.106 Sum_probs=66.5
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH-HHHHHhhccCCeEEEEecCCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSILYKTRLPLVLAFNKTDV 243 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~-~~~~l~~~~~P~IlVlNKiDl 243 (426)
.+.+.||||||+..+. .+...+ -..+|++++|+|.....+... ...... +.......+.|++||+||+|+
T Consensus 48 ~~~l~i~Dt~G~~~~~-------~~~~~~-~~~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl 118 (164)
T cd04175 48 QCMLEILDTAGTEQFT-------AMRDLY-MKNGQGFVLVYSITAQSTFND-LQDLREQILRVKDTEDVPMILVGNKCDL 118 (164)
T ss_pred EEEEEEEECCCcccch-------hHHHHH-HhhCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCcc
Confidence 3567899999997752 122211 133688888998754322111 111111 111112356899999999999
Q ss_pred CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA 312 (426)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~ 312 (426)
....... ......+. ..+ ..+++++||++|.|+.+++.+|.+.+
T Consensus 119 ~~~~~~~--~~~~~~~~----------------------~~~-~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 119 EDERVVG--KEQGQNLA----------------------RQW-GCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred hhccEEc--HHHHHHHH----------------------HHh-CCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 7542110 00111110 111 25799999999999999999998654
No 82
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.70 E-value=1.2e-16 Score=171.74 Aligned_cols=169 Identities=17% Similarity=0.311 Sum_probs=106.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..++++|+|+|++|+|||||+++|++..+..+.. ++.+ .. -+.+. .
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~-------------~GiT-q~-------------------i~~~~-v 286 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEA-------------GGIT-QK-------------------IGAYE-V 286 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccC-------------Cccc-cc-------------------cceEE-E
Confidence 4678899999999999999999998876443211 0000 00 00000 0
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
. +.. ...+..+.||||||+..+. ......+ ..+|++|+|||+..+..++++ ..+.
T Consensus 287 ~-~~~-----------~~~~~kItfiDTPGhe~F~------~mr~rg~--~~aDiaILVVDA~dGv~~QT~-----E~I~ 341 (742)
T CHL00189 287 E-FEY-----------KDENQKIVFLDTPGHEAFS------SMRSRGA--NVTDIAILIIAADDGVKPQTI-----EAIN 341 (742)
T ss_pred E-EEe-----------cCCceEEEEEECCcHHHHH------HHHHHHH--HHCCEEEEEEECcCCCChhhH-----HHHH
Confidence 0 000 0124689999999997652 1111112 347999999999988777653 3445
Q ss_pred HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
.+...++|+|+|+||+|+.... ...+...+... ....+.+....+++++||++|.|+.+|+
T Consensus 342 ~~k~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~------------------~ll~e~~g~~vpvv~VSAktG~GIdeLl 402 (742)
T CHL00189 342 YIQAANVPIIVAINKIDKANAN-TERIKQQLAKY------------------NLIPEKWGGDTPMIPISASQGTNIDKLL 402 (742)
T ss_pred HHHhcCceEEEEEECCCccccC-HHHHHHHHHHh------------------ccchHhhCCCceEEEEECCCCCCHHHHH
Confidence 5666789999999999997632 11122221100 1111223345789999999999999999
Q ss_pred HHHHHHH
Q 014354 306 KAVEESA 312 (426)
Q Consensus 306 ~~l~~~~ 312 (426)
++|....
T Consensus 403 e~I~~l~ 409 (742)
T CHL00189 403 ETILLLA 409 (742)
T ss_pred Hhhhhhh
Confidence 9987654
No 83
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.70 E-value=7e-17 Score=143.07 Aligned_cols=113 Identities=18% Similarity=0.150 Sum_probs=66.6
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh---hccCCeEEEEecC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKT 241 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~---~~~~P~IlVlNKi 241 (426)
+..+.||||||+..+. .+...+ ...++++|+|+|+........ ....+...+. ..++|++||+||+
T Consensus 42 ~~~~~i~Dt~G~~~~~-------~~~~~~-~~~~~~ii~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~piiiv~nK~ 110 (158)
T cd04151 42 NLKFQVWDLGGQTSIR-------PYWRCY-YSNTDAIIYVVDSTDRDRLGT---AKEELHAMLEEEELKGAVLLVFANKQ 110 (158)
T ss_pred CEEEEEEECCCCHHHH-------HHHHHH-hcCCCEEEEEEECCCHHHHHH---HHHHHHHHHhchhhcCCcEEEEEeCC
Confidence 4678999999997641 111111 135899999999875322111 0111111122 2478999999999
Q ss_pred CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354 242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (426)
Q Consensus 242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~ 310 (426)
|+.......++...+. ... ......+++++||++|.|+.+++++|.+
T Consensus 111 Dl~~~~~~~~i~~~~~---------------------~~~-~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 111 DMPGALSEAEISEKLG---------------------LSE-LKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred CCCCCCCHHHHHHHhC---------------------ccc-cCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 9975431111211110 000 0011246999999999999999999864
No 84
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1e-16 Score=165.77 Aligned_cols=204 Identities=18% Similarity=0.300 Sum_probs=123.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
.-+.++|+|+|+..+|||-||..|.+..+..+..+.|-+... .+.+|.. .|+... ..+..
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIg-At~fp~~---ni~e~t---k~~~~------------- 531 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIG-ATYFPAE---NIREKT---KELKK------------- 531 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeecc-ccccchH---HHHHHH---HHHHh-------------
Confidence 446789999999999999999999999877665544433221 1111111 011111 01111
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
-.....+-+.+++|||||+..|.+.+..+. .+||++|+|||..+|+.+++ ...+.
T Consensus 532 ------------~~K~~~kvPg~lvIdtpghEsFtnlRsrgs--------slC~~aIlvvdImhGlepqt-----iESi~ 586 (1064)
T KOG1144|consen 532 ------------DAKKRLKVPGLLVIDTPGHESFTNLRSRGS--------SLCDLAILVVDIMHGLEPQT-----IESIN 586 (1064)
T ss_pred ------------hhhhhcCCCeeEEecCCCchhhhhhhhccc--------cccceEEEEeehhccCCcch-----hHHHH
Confidence 111113457899999999988743333333 67999999999999999998 45667
Q ss_pred HHhhccCCeEEEEecCCCCChHhH---HHHHHHHHHHHHHhcccc-chhhhHH---HHhhhhHhhhhc------CCceEE
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHEFA---LEWMQDFEVFQAAISSDH-SYTSTLT---NSLSLALDEFYK------NLKSVG 292 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~~~---~~~~~~~~~l~~~~~~~~-~~~~~~~---~~~~~~l~~~~~------~~~vv~ 292 (426)
+++..+.|+||++||+|+...... ..+...+..-........ .....+. +.+++...-||. ++.+||
T Consensus 587 lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVP 666 (1064)
T KOG1144|consen 587 LLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVP 666 (1064)
T ss_pred HHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeee
Confidence 788999999999999998753211 011111111000000000 0000110 112222222332 468999
Q ss_pred eecccCCCHHHHHHHHHHHHHH
Q 014354 293 VSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 293 vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
+||.+|+||.+|+-+|....+.
T Consensus 667 TSA~sGeGipdLl~llv~ltQk 688 (1064)
T KOG1144|consen 667 TSAISGEGIPDLLLLLVQLTQK 688 (1064)
T ss_pred cccccCCCcHHHHHHHHHHHHH
Confidence 9999999999999999877555
No 85
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.70 E-value=1.1e-16 Score=141.65 Aligned_cols=117 Identities=15% Similarity=0.169 Sum_probs=67.2
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH--HHhhccCCeEEEEecC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS--ILYKTRLPLVLAFNKT 241 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~--~l~~~~~P~IlVlNKi 241 (426)
.+..+.||||||+.++. .+...+ ...++++++|+|+....+..........+.. .+...++|++||+||+
T Consensus 43 ~~~~~~l~Dt~G~~~~~-------~~~~~~-~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~ 114 (162)
T cd04157 43 GNLSFTAFDMSGQGKYR-------GLWEHY-YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKM 114 (162)
T ss_pred CCEEEEEEECCCCHhhH-------HHHHHH-HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCc
Confidence 34678999999997642 111111 1357999999999764422110000011111 0112479999999999
Q ss_pred CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354 242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (426)
Q Consensus 242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~ 310 (426)
|+.......++...+. . .. ......+++++||++|.|+++++++|.+
T Consensus 115 Dl~~~~~~~~~~~~l~----~---------------~~---~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 115 DLPDALTAVKITQLLG----L---------------EN---IKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred cccCCCCHHHHHHHhC----C---------------cc---ccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 9976432111111110 0 00 0011235899999999999999999864
No 86
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.70 E-value=1.6e-16 Score=140.96 Aligned_cols=160 Identities=17% Similarity=0.197 Sum_probs=91.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+++|.+|||||||++++++..+..... |.+........+. . .
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~-------~t~~~~~~~~~~~-----------------------~-----~- 45 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYL-------PTIGIDYGVKKVS-----------------------V-----R- 45 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCC-------CccceeEEEEEEE-----------------------E-----C-
Confidence 68999999999999999999887542111 1110000000000 0 0
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH-HHHHHhh
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSILYK 229 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~-~~~~l~~ 229 (426)
.....+.||||||+..+. .+...+ ...++++|+|+|.+...+.... ...+. +......
T Consensus 46 ------------~~~~~l~i~Dt~G~~~~~-------~~~~~~-~~~~d~~ilv~D~~~~~s~~~~-~~~~~~~~~~~~~ 104 (168)
T cd04119 46 ------------NKEVRVNFFDLSGHPEYL-------EVRNEF-YKDTQGVLLVYDVTDRQSFEAL-DSWLKEMKQEGGP 104 (168)
T ss_pred ------------CeEEEEEEEECCccHHHH-------HHHHHH-hccCCEEEEEEECCCHHHHHhH-HHHHHHHHHhccc
Confidence 123678999999986541 122111 1347999999998764321111 00011 1111111
Q ss_pred ----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 230 ----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 230 ----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
.+.|+++|+||+|+....... ......+.. . ...+++++||++|.|+.+++
T Consensus 105 ~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 105 HGNMENIVVVVCANKIDLTKHRAVS--EDEGRLWAE---------------------S--KGFKYFETSACTGEGVNEMF 159 (168)
T ss_pred cccCCCceEEEEEEchhcccccccC--HHHHHHHHH---------------------H--cCCeEEEEECCCCCCHHHHH
Confidence 468999999999997422110 001110000 1 12568999999999999999
Q ss_pred HHHHHHH
Q 014354 306 KAVEESA 312 (426)
Q Consensus 306 ~~l~~~~ 312 (426)
++|.+.+
T Consensus 160 ~~l~~~l 166 (168)
T cd04119 160 QTLFSSI 166 (168)
T ss_pred HHHHHHH
Confidence 9998764
No 87
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=99.69 E-value=1.3e-16 Score=156.93 Aligned_cols=166 Identities=18% Similarity=0.209 Sum_probs=110.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
++++|.|+.|||||||||+|+.... +.+++|+-++.+-..+.....+. ..-+.+.-..|||||||++ .
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGEvgID~~~~l~--------~~~e~~~El~nGCICCT~r--~ 69 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGEVGIDGGALLS--------DTGEEVVELTNGCICCTVR--D 69 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecCccccccCCCccc--------cCCccEEEeCCceEEEecc--c
Confidence 6899999999999999999999875 77777776664433333100000 0001122345899999976 5
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-------cCCcEEEEEEeCCCCCCchhhhhhHHH
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-------TFPTVVTYVVDTPRSANPMTFMSNMLY 222 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-------~~~d~vl~VVDa~~~~~~~~~~~~~l~ 222 (426)
.++.-...+.+ +...+++++|+|.|+.+|. .+...+.. ...|.+|.|||+.+.........
T Consensus 70 dl~~~~~~L~~-~~~~~D~ivIEtTGlA~P~-------pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~---- 137 (323)
T COG0523 70 DLLPALERLLR-RRDRPDRLVIETTGLADPA-------PVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIA---- 137 (323)
T ss_pred hhHHHHHHHHh-ccCCCCEEEEeCCCCCCCH-------HHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHH----
Confidence 56666666666 5667999999999999982 22222211 23578999999987665432111
Q ss_pred HHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHH
Q 014354 223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQ 260 (426)
Q Consensus 223 ~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~ 260 (426)
--...|..+..+||+||+|+++...+..+...++.++
T Consensus 138 -~~~~~Qia~AD~ivlNK~Dlv~~~~l~~l~~~l~~ln 174 (323)
T COG0523 138 -ELAEDQLAFADVIVLNKTDLVDAEELEALEARLRKLN 174 (323)
T ss_pred -HHHHHHHHhCcEEEEecccCCCHHHHHHHHHHHHHhC
Confidence 1123478899999999999999886555555555443
No 88
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.69 E-value=5.6e-16 Score=164.46 Aligned_cols=128 Identities=23% Similarity=0.313 Sum_probs=76.6
Q ss_pred CEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCCh
Q 014354 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 167 ~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~ 246 (426)
.+.||||||+..+... .. .....+|++++|+|+..+..++++. .+..+...++|+++|+||+|+...
T Consensus 72 ~i~~iDTPG~e~f~~~-------~~-~~~~~aD~~IlVvDa~~g~~~qt~e-----~i~~~~~~~vpiIvviNK~D~~~~ 138 (586)
T PRK04004 72 GLLFIDTPGHEAFTNL-------RK-RGGALADIAILVVDINEGFQPQTIE-----AINILKRRKTPFVVAANKIDRIPG 138 (586)
T ss_pred CEEEEECCChHHHHHH-------HH-HhHhhCCEEEEEEECCCCCCHhHHH-----HHHHHHHcCCCEEEEEECcCCchh
Confidence 4899999999876211 11 1124579999999999987776643 334456678999999999998632
Q ss_pred HhH--------------HHHHHHHH----HHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354 247 EFA--------------LEWMQDFE----VFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (426)
Q Consensus 247 ~~~--------------~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l 308 (426)
... ......+. .+...+.. ..+. ..+-..+.+|+...+++++||++|.|+.+|+..+
T Consensus 139 ~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~-~g~~----~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i 213 (586)
T PRK04004 139 WKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSE-LGFS----ADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVL 213 (586)
T ss_pred hhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-cCCC----hhhhhhhhccCCCceEeeccCCCCCChHHHHHHH
Confidence 110 00011110 00000000 0000 0000112345667899999999999999999887
Q ss_pred HHHH
Q 014354 309 EESA 312 (426)
Q Consensus 309 ~~~~ 312 (426)
...+
T Consensus 214 ~~~~ 217 (586)
T PRK04004 214 AGLA 217 (586)
T ss_pred HHHH
Confidence 6543
No 89
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.69 E-value=2.4e-16 Score=140.83 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=69.2
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHH-HHHHHHh---hccCCeEEEEecC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML-YACSILY---KTRLPLVLAFNKT 241 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l-~~~~~l~---~~~~P~IlVlNKi 241 (426)
..+.+|||||+..+. ......+ ..+|++|+|+|+.......... ... .+...+. ..++|+++|+||+
T Consensus 49 ~~~~~~D~~g~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~ 119 (172)
T cd01862 49 VTLQIWDTAGQERFQ------SLGVAFY--RGADCCVLVYDVTNPKSFESLD-SWRDEFLIQASPSDPENFPFVVLGNKI 119 (172)
T ss_pred EEEEEEeCCChHHHH------hHHHHHh--cCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCccCCCCceEEEEEECc
Confidence 567899999986541 1111112 3479999999987543211110 000 1111111 2278999999999
Q ss_pred CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHH
Q 014354 242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF 315 (426)
Q Consensus 242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~ 315 (426)
|+..+... .......+. ..+...+++++||++|.|+.++++++.+.+.+.
T Consensus 120 Dl~~~~~~--~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 120 DLEEKRQV--STKKAQQWC----------------------QSNGNIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred cccccccc--CHHHHHHHH----------------------HHcCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 99843211 011111111 112346799999999999999999998876553
No 90
>COG2262 HflX GTPases [General function prediction only]
Probab=99.69 E-value=4.4e-16 Score=153.78 Aligned_cols=165 Identities=22% Similarity=0.277 Sum_probs=110.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
...+.|+++|+.|||||||+|+|++.... +...-|+| |+|..-.+.
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~-------------~~d~LFAT------------------LdpttR~~~--- 235 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVY-------------VADQLFAT------------------LDPTTRRIE--- 235 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCee-------------cccccccc------------------ccCceeEEE---
Confidence 35679999999999999999999977533 22222232 000000000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-----cCCcEEEEEEeCCCCCCchhhhhhHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-----TFPTVVTYVVDTPRSANPMTFMSNML 221 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-----~~~d~vl~VVDa~~~~~~~~~~~~~l 221 (426)
+..+..+++-||-|+++.. ...+.+.|++ ..+|+++.|||+++. ..........
T Consensus 236 ---------------l~~g~~vlLtDTVGFI~~L-----P~~LV~AFksTLEE~~~aDlllhVVDaSdp-~~~~~~~~v~ 294 (411)
T COG2262 236 ---------------LGDGRKVLLTDTVGFIRDL-----PHPLVEAFKSTLEEVKEADLLLHVVDASDP-EILEKLEAVE 294 (411)
T ss_pred ---------------eCCCceEEEecCccCcccC-----ChHHHHHHHHHHHHhhcCCEEEEEeecCCh-hHHHHHHHHH
Confidence 1235789999999997753 3456666655 348999999999876 3333333334
Q ss_pred HHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354 222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (426)
Q Consensus 222 ~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv 301 (426)
.++..+...++|+|+|+||+|++..... ...+. .+. ...|++||++|.|+
T Consensus 295 ~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~--------------------------~~~-~~~v~iSA~~~~gl 344 (411)
T COG2262 295 DVLAEIGADEIPIILVLNKIDLLEDEEI---LAELE--------------------------RGS-PNPVFISAKTGEGL 344 (411)
T ss_pred HHHHHcCCCCCCEEEEEecccccCchhh---hhhhh--------------------------hcC-CCeEEEEeccCcCH
Confidence 4444444567899999999999877641 11111 011 15999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 014354 302 EAYFKAVEESAQEFM 316 (426)
Q Consensus 302 ~~l~~~l~~~~~~~~ 316 (426)
+.|+..|...++...
T Consensus 345 ~~L~~~i~~~l~~~~ 359 (411)
T COG2262 345 DLLRERIIELLSGLR 359 (411)
T ss_pred HHHHHHHHHHhhhcc
Confidence 999999999888643
No 91
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.69 E-value=2.4e-16 Score=140.58 Aligned_cols=113 Identities=16% Similarity=0.153 Sum_probs=68.0
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~ 245 (426)
..+.||||||+..+. .+...+ ...+|++++|+|+....+... ....+..+......++|+|+|+||+|+..
T Consensus 52 ~~l~i~D~~G~~~~~-------~~~~~~-~~~~d~~llv~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 52 VKLQIWDTAGQERFR-------TITQSY-YRSANGAIIAYDITRRSSFES-VPHWIEEVEKYGASNVVLLLIGNKCDLEE 122 (165)
T ss_pred EEEEEEECCChHHHH-------HHHHHH-hccCCEEEEEEECcCHHHHHh-HHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 578999999986541 112111 134799999999976432211 11111111112234789999999999976
Q ss_pred hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354 246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (426)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~ 311 (426)
.... .......+. ..+....++++||++|.|++++++.+.+.
T Consensus 123 ~~~~--~~~~~~~~~----------------------~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 123 QREV--LFEEACTLA----------------------EKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred cccc--CHHHHHHHH----------------------HHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 4321 001111111 11233468999999999999999998764
No 92
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.69 E-value=2.9e-16 Score=145.16 Aligned_cols=118 Identities=16% Similarity=0.078 Sum_probs=69.8
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCch--hhhhhHH-HHHHHHhhccCCeEEEEecCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPM--TFMSNML-YACSILYKTRLPLVLAFNKTD 242 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~--~~~~~~l-~~~~~l~~~~~P~IlVlNKiD 242 (426)
..+.||||||+..+. .+...+ -..++++|+|+|.....+-. ..|...+ .........++|+|||+||+|
T Consensus 50 ~~l~l~Dt~G~~~~~-------~~~~~~-~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~D 121 (201)
T cd04107 50 VRLQLWDIAGQERFG-------GMTRVY-YRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCD 121 (201)
T ss_pred EEEEEEECCCchhhh-------hhHHHH-hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCC
Confidence 578999999996641 122221 13579999999986532211 1111111 000111135789999999999
Q ss_pred CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHH
Q 014354 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF 315 (426)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~ 315 (426)
+...... ....+..+. ..++..+++++||++|.|+.+++.+|.+.+...
T Consensus 122 l~~~~~~--~~~~~~~~~----------------------~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 122 LKKRLAK--DGEQMDQFC----------------------KENGFIGWFETSAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred ccccccc--CHHHHHHHH----------------------HHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 9742211 011111111 112335799999999999999999999877654
No 93
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.69 E-value=1.4e-16 Score=141.90 Aligned_cols=113 Identities=17% Similarity=0.154 Sum_probs=65.7
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh---hccCCeEEEEecC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKT 241 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~---~~~~P~IlVlNKi 241 (426)
...+.||||||+.++. ......+ ..+|++|||+|+....+ +......+...+. ..+.|++||+||+
T Consensus 43 ~~~~~l~D~~G~~~~~------~~~~~~~--~~ad~~i~v~D~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~ 111 (159)
T cd04150 43 NISFTVWDVGGQDKIR------PLWRHYF--QNTQGLIFVVDSNDRER---IGEAREELQRMLNEDELRDAVLLVFANKQ 111 (159)
T ss_pred CEEEEEEECCCCHhHH------HHHHHHh--cCCCEEEEEEeCCCHHH---HHHHHHHHHHHHhcHHhcCCCEEEEEECC
Confidence 4678999999996641 1111122 34799999999975322 1111111112222 1358999999999
Q ss_pred CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354 242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (426)
Q Consensus 242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~ 310 (426)
|+.......++...+. +.. -......++++||++|.|+++++++|..
T Consensus 112 Dl~~~~~~~~i~~~~~-~~~---------------------~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 112 DLPNAMSAAEVTDKLG-LHS---------------------LRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCCCHHHHHHHhC-ccc---------------------cCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 9965322111211110 000 0011235789999999999999999853
No 94
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.69 E-value=2.2e-16 Score=141.78 Aligned_cols=123 Identities=17% Similarity=0.146 Sum_probs=70.6
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDV 243 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKiDl 243 (426)
..+.||||||+.++.. +... ....+|++|+|+|..+.. .|......+...+. ..++|+|||+||+|+
T Consensus 46 ~~~~i~Dt~G~~~~~~-------~~~~-~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 114 (174)
T smart00174 46 VELGLWDTAGQEDYDR-------LRPL-SYPDTDVFLICFSVDSPA---SFENVKEKWYPEVKHFCPNTPIILVGTKLDL 114 (174)
T ss_pred EEEEEEECCCCcccch-------hchh-hcCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhhCCCCCEEEEecChhh
Confidence 5789999999976521 1111 113579999999986532 22211111222222 247999999999998
Q ss_pred CChHhH-HHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354 244 AQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA 312 (426)
Q Consensus 244 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~ 312 (426)
...... ..+... ....+....+..+....+..+++++||++|.|+.+++..+.+.+
T Consensus 115 ~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 115 REDKSTLRELSKQ-------------KQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred hhChhhhhhhhcc-------------cCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 764321 111000 00001111111122223334799999999999999999988764
No 95
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.69 E-value=2.6e-16 Score=171.36 Aligned_cols=162 Identities=24% Similarity=0.311 Sum_probs=106.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..+|+++|.||||||||+|+|++.... +.+.|++| + +.. .|.+.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-------------vgn~pGvT-v---e~k--------------~g~~~----- 46 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR-------------VGNWAGVT-V---ERK--------------EGQFS----- 46 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc-------------cCCCCCce-E---eeE--------------EEEEE-----
Confidence 457999999999999999999987532 34445444 1 110 11111
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccch---hchHHHH-HHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW---SASGAII-TEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~---~~~~~~l-~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
.++.++.+|||||+.++... ......+ ...+....+|++++|+|+++.... ++..
T Consensus 47 --------------~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~-------l~l~ 105 (772)
T PRK09554 47 --------------TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN-------LYLT 105 (772)
T ss_pred --------------cCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhh-------HHHH
Confidence 24568999999999876321 1222222 233344568999999999764322 2233
Q ss_pred HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
..+.+.++|+|+|+||+|+.+..... .+.+.+... . ..+++++||++|+|++++
T Consensus 106 ~ql~e~giPvIvVlNK~Dl~~~~~i~---id~~~L~~~----------------------L-G~pVvpiSA~~g~GIdeL 159 (772)
T PRK09554 106 LQLLELGIPCIVALNMLDIAEKQNIR---IDIDALSAR----------------------L-GCPVIPLVSTRGRGIEAL 159 (772)
T ss_pred HHHHHcCCCEEEEEEchhhhhccCcH---HHHHHHHHH----------------------h-CCCEEEEEeecCCCHHHH
Confidence 44567789999999999987543221 122222111 1 358999999999999999
Q ss_pred HHHHHHHHH
Q 014354 305 FKAVEESAQ 313 (426)
Q Consensus 305 ~~~l~~~~~ 313 (426)
++.+.....
T Consensus 160 ~~~I~~~~~ 168 (772)
T PRK09554 160 KLAIDRHQA 168 (772)
T ss_pred HHHHHHhhh
Confidence 999987654
No 96
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.69 E-value=3e-16 Score=170.97 Aligned_cols=163 Identities=23% Similarity=0.276 Sum_probs=105.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
...++|+|+|.||||||||+|+|++.... + +...|+.| ++.+. +.+.
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~------i------v~~~pGvT----~d~~~--------------~~~~--- 319 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREA------V------VEDTPGVT----RDRVS--------------YDAE--- 319 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCce------e------ecCCCCee----EEEEE--------------EEEE---
Confidence 34578999999999999999999986532 2 33334333 22110 0010
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHH--HhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~--~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
..+..+.||||||+.... ......+.... ....+|++|+|+|+..++...+ ..+.
T Consensus 320 ----------------~~~~~~~liDT~G~~~~~--~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-----~~i~ 376 (712)
T PRK09518 320 ----------------WAGTDFKLVDTGGWEADV--EGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-----ERIV 376 (712)
T ss_pred ----------------ECCEEEEEEeCCCcCCCC--ccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-----HHHH
Confidence 234678999999986421 11222222222 1245899999999988776544 2234
Q ss_pred HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
..+...++|+|+|+||+|+..... ....+. ..+...++++||++|.||.+|
T Consensus 377 ~~Lr~~~~pvIlV~NK~D~~~~~~---~~~~~~--------------------------~lg~~~~~~iSA~~g~GI~eL 427 (712)
T PRK09518 377 RMLRRAGKPVVLAVNKIDDQASEY---DAAEFW--------------------------KLGLGEPYPISAMHGRGVGDL 427 (712)
T ss_pred HHHHhcCCCEEEEEECcccccchh---hHHHHH--------------------------HcCCCCeEEEECCCCCCchHH
Confidence 556678999999999999865321 111110 012235789999999999999
Q ss_pred HHHHHHHHHH
Q 014354 305 FKAVEESAQE 314 (426)
Q Consensus 305 ~~~l~~~~~~ 314 (426)
+++|...++.
T Consensus 428 l~~i~~~l~~ 437 (712)
T PRK09518 428 LDEALDSLKV 437 (712)
T ss_pred HHHHHHhccc
Confidence 9999988755
No 97
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.68 E-value=3.7e-16 Score=139.53 Aligned_cols=159 Identities=15% Similarity=0.156 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|+++|.+|||||||++++++..+..... |.. +... +. -+.+.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~-------~t~---~~~~----~~-----------------~~~~~----- 45 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYI-------PTI---EDTY----RQ-----------------VISCS----- 45 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcC-------Ccc---hheE----EE-----------------EEEEC-----
Confidence 479999999999999999999876432110 000 0000 00 00000
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY- 228 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~- 228 (426)
.....+.||||||+.++. .+... ....++++|+|.|.....+... .......+..+.
T Consensus 46 -------------~~~~~l~i~Dt~G~~~~~-------~~~~~-~~~~~~~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~ 103 (165)
T cd04140 46 -------------KNICTLQITDTTGSHQFP-------AMQRL-SISKGHAFILVYSVTSKQSLEE-LKPIYELICEIKG 103 (165)
T ss_pred -------------CEEEEEEEEECCCCCcch-------HHHHH-HhhcCCEEEEEEECCCHHHHHH-HHHHHHHHHHHhc
Confidence 123578899999997752 11111 1134688999999865432211 111111122221
Q ss_pred --hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 229 --KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 229 --~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
..++|++||+||+|+......... ....+ + . ....+++++||++|.|+.++++
T Consensus 104 ~~~~~~piilv~nK~Dl~~~~~v~~~--~~~~~------------------~----~-~~~~~~~e~SA~~g~~v~~~f~ 158 (165)
T cd04140 104 NNIEKIPIMLVGNKCDESHKREVSSN--EGAAC------------------A----T-EWNCAFMETSAKTNHNVQELFQ 158 (165)
T ss_pred CCCCCCCEEEEEECccccccCeecHH--HHHHH------------------H----H-HhCCcEEEeecCCCCCHHHHHH
Confidence 146899999999999763321100 00000 0 0 1135689999999999999999
Q ss_pred HHHHH
Q 014354 307 AVEES 311 (426)
Q Consensus 307 ~l~~~ 311 (426)
+|...
T Consensus 159 ~l~~~ 163 (165)
T cd04140 159 ELLNL 163 (165)
T ss_pred HHHhc
Confidence 98753
No 98
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.68 E-value=3.1e-16 Score=140.83 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=69.1
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDV 243 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKiDl 243 (426)
+.+.||||||+..+... .. .....++++++|+|.....+ |......+...+. ..++|+++|+||+|+
T Consensus 48 ~~~~i~Dt~G~~~~~~~-------~~-~~~~~~~~~ilv~~~~~~~s---~~~~~~~~~~~l~~~~~~~piivv~nK~Dl 116 (174)
T cd04135 48 YLLGLYDTAGQEDYDRL-------RP-LSYPMTDVFLICFSVVNPAS---FQNVKEEWVPELKEYAPNVPYLLVGTQIDL 116 (174)
T ss_pred EEEEEEeCCCccccccc-------cc-ccCCCCCEEEEEEECCCHHH---HHHHHHHHHHHHHhhCCCCCEEEEeEchhh
Confidence 56789999998775211 11 11134689999999865432 2111111122222 457999999999998
Q ss_pred CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA 312 (426)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~ 312 (426)
....... ..+..+.. ..+....+..+...++..+++++||++|.|+.+++..+...+
T Consensus 117 ~~~~~~~---~~~~~~~~---------~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 117 RDDPKTL---ARLNDMKE---------KPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred hcChhhH---HHHhhccC---------CCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 6543211 11110000 001111111111223445699999999999999999887653
No 99
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.68 E-value=1.7e-16 Score=144.82 Aligned_cols=165 Identities=19% Similarity=0.218 Sum_probs=94.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+++|.+|||||||++++.+..+... .|... .+ -+.+.
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~--------~~t~~-----~~---------------------~~~~~---- 57 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH--------QPTQH-----PT---------------------SEELA---- 57 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc--------CCccc-----cc---------------------eEEEE----
Confidence 457899999999999999999998653210 01000 00 00000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
..+.++.+|||||+..+. ......+ ..++++++|+|++... .+.........++
T Consensus 58 ---------------~~~~~~~~~D~~G~~~~~------~~~~~~~--~~ad~ii~vvD~~~~~---~~~~~~~~l~~l~ 111 (184)
T smart00178 58 ---------------IGNIKFTTFDLGGHQQAR------RLWKDYF--PEVNGIVYLVDAYDKE---RFAESKRELDALL 111 (184)
T ss_pred ---------------ECCEEEEEEECCCCHHHH------HHHHHHh--CCCCEEEEEEECCcHH---HHHHHHHHHHHHH
Confidence 134688999999986541 1111122 3579999999996532 1111111111222
Q ss_pred h---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 228 ~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
. ..++|++||+||+|+...-...++.+.+. +.. ...+.+. .......++++||++|+|+.++
T Consensus 112 ~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~-l~~-----------~~~~~~~---~~~~~~~i~~~Sa~~~~g~~~~ 176 (184)
T smart00178 112 SDEELATVPFLILGNKIDAPYAASEDELRYALG-LTN-----------TTGSKGK---VGVRPLEVFMCSVVRRMGYGEG 176 (184)
T ss_pred cChhhcCCCEEEEEeCccccCCCCHHHHHHHcC-CCc-----------ccccccc---cCCceeEEEEeecccCCChHHH
Confidence 1 25789999999999864322222222221 000 0000000 0113456999999999999999
Q ss_pred HHHHHHH
Q 014354 305 FKAVEES 311 (426)
Q Consensus 305 ~~~l~~~ 311 (426)
+++|...
T Consensus 177 ~~wl~~~ 183 (184)
T smart00178 177 FKWLSQY 183 (184)
T ss_pred HHHHHhh
Confidence 9999764
No 100
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.68 E-value=2.5e-16 Score=139.21 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
+..+.||||||+..+. .+...+ ...++++++|+|+...............+.......+.|+++|+||+|+.
T Consensus 42 ~~~~~i~D~~G~~~~~-------~~~~~~-~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 113 (158)
T cd00878 42 NVSFTVWDVGGQDKIR-------PLWKHY-YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLP 113 (158)
T ss_pred CEEEEEEECCCChhhH-------HHHHHH-hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCc
Confidence 4689999999987641 111111 13469999999997642211111111111111123578999999999998
Q ss_pred ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (426)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~ 310 (426)
......+..+.+.. .. ......+++++||++|.|+.+++++|..
T Consensus 114 ~~~~~~~~~~~~~~---------------------~~-~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 114 GALSVSELIEKLGL---------------------EK-ILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred cccCHHHHHHhhCh---------------------hh-ccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 75422222221110 00 0123467999999999999999998864
No 101
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.68 E-value=3.9e-16 Score=141.31 Aligned_cols=170 Identities=15% Similarity=0.146 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|+++|.+|||||||+++++...+.....+ .+.. .+.. .+..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~p-------t~~~-~~~~-----------------------~~~~------ 44 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVP-------TVFD-NYAV-----------------------TVMI------ 44 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-------ceee-eeEE-----------------------EEEE------
Confidence 5799999999999999999998765322111 1100 0000 0000
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY- 228 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~- 228 (426)
....+.+.||||||+.++. .+...+ -..++++|+|+|.....+-... ...+...+.
T Consensus 45 ------------~~~~~~l~i~Dt~G~~~~~-------~~~~~~-~~~a~~~ilv~d~~~~~s~~~~---~~~w~~~i~~ 101 (175)
T cd01874 45 ------------GGEPYTLGLFDTAGQEDYD-------RLRPLS-YPQTDVFLVCFSVVSPSSFENV---KEKWVPEITH 101 (175)
T ss_pred ------------CCEEEEEEEEECCCccchh-------hhhhhh-cccCCEEEEEEECCCHHHHHHH---HHHHHHHHHH
Confidence 0123678899999997752 111111 1347999999998654322111 001112222
Q ss_pred -hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 229 -KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 229 -~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
..++|+|||+||+|+...... .+.+.. . ..+.+....+..+...++...++++||++|.|+.++|+.
T Consensus 102 ~~~~~piilvgnK~Dl~~~~~~---~~~l~~---~------~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~ 169 (175)
T cd01874 102 HCPKTPFLLVGTQIDLRDDPST---IEKLAK---N------KQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDE 169 (175)
T ss_pred hCCCCCEEEEEECHhhhhChhh---HHHhhh---c------cCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHH
Confidence 236899999999998654321 111110 0 000111111221112233467999999999999999998
Q ss_pred HHHH
Q 014354 308 VEES 311 (426)
Q Consensus 308 l~~~ 311 (426)
+...
T Consensus 170 ~~~~ 173 (175)
T cd01874 170 AILA 173 (175)
T ss_pred HHHH
Confidence 8764
No 102
>PLN03118 Rab family protein; Provisional
Probab=99.68 E-value=8.7e-16 Score=143.15 Aligned_cols=172 Identities=14% Similarity=0.156 Sum_probs=99.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
.....+|+|+|.+|||||||+++|++..+... .|... ....+. .+..
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~--------~~t~~-----~~~~~~------------------~~~~-- 57 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDL--------APTIG-----VDFKIK------------------QLTV-- 57 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCCc--------CCCce-----eEEEEE------------------EEEE--
Confidence 34567899999999999999999998653210 01000 000000 0000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
. .....+.||||||+.++. .+...+ ...++++|+|+|.....+...........+.
T Consensus 58 ---~-------------~~~~~l~l~Dt~G~~~~~-------~~~~~~-~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~ 113 (211)
T PLN03118 58 ---G-------------GKRLKLTIWDTAGQERFR-------TLTSSY-YRNAQGIILVYDVTRRETFTNLSDVWGKEVE 113 (211)
T ss_pred ---C-------------CEEEEEEEEECCCchhhH-------HHHHHH-HhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 0 123578999999997752 111111 1346999999999753322111000011111
Q ss_pred HH-hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 226 IL-YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 226 ~l-~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
.. ...+.|.|||+||+|+....... ......+. .. ...+++++||++|.|++++
T Consensus 114 ~~~~~~~~~~ilv~NK~Dl~~~~~i~--~~~~~~~~----------------------~~-~~~~~~e~SAk~~~~v~~l 168 (211)
T PLN03118 114 LYSTNQDCVKMLVGNKVDRESERDVS--REEGMALA----------------------KE-HGCLFLECSAKTRENVEQC 168 (211)
T ss_pred HhcCCCCCCEEEEEECccccccCccC--HHHHHHHH----------------------HH-cCCEEEEEeCCCCCCHHHH
Confidence 11 12467999999999997543211 00111000 00 1256899999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 014354 305 FKAVEESAQEFMETY 319 (426)
Q Consensus 305 ~~~l~~~~~~~~~~~ 319 (426)
+.+|...+...+..+
T Consensus 169 ~~~l~~~~~~~~~~~ 183 (211)
T PLN03118 169 FEELALKIMEVPSLL 183 (211)
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999887755443
No 103
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.68 E-value=3.3e-16 Score=143.47 Aligned_cols=171 Identities=18% Similarity=0.198 Sum_probs=95.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+|+|.+|||||||++++++..+..... |.+.. .+.. .+...
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~-------~t~~~-~~~~-----------------------~i~~~------ 44 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYE-------PTVFE-NYVH-----------------------DIFVD------ 44 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccC-------Cccee-eeEE-----------------------EEEEC------
Confidence 68999999999999999999876543111 11100 0000 00000
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-- 228 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-- 228 (426)
.....+.||||||+.++.. +... .-..++++++|.|.....+-.. ....++..+.
T Consensus 45 ------------~~~~~l~i~Dt~G~~~~~~-------l~~~-~~~~a~~~ilv~dv~~~~sf~~---~~~~~~~~i~~~ 101 (189)
T cd04134 45 ------------GLHIELSLWDTAGQEEFDR-------LRSL-SYADTDVIMLCFSVDSPDSLEN---VESKWLGEIREH 101 (189)
T ss_pred ------------CEEEEEEEEECCCChhccc-------cccc-cccCCCEEEEEEECCCHHHHHH---HHHHHHHHHHHh
Confidence 1236789999999976521 1111 1134688888877654322111 1011112222
Q ss_pred hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l 308 (426)
..+.|+|||+||+|+.............. . ..+....+..+.......+++++||++|.|+.++|.+|
T Consensus 102 ~~~~piilvgNK~Dl~~~~~~~~~~~~~~-------~-----~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l 169 (189)
T cd04134 102 CPGVKLVLVALKCDLREARNERDDLQRYG-------K-----HTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEA 169 (189)
T ss_pred CCCCCEEEEEEChhhccChhhHHHHhhcc-------C-----CCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHH
Confidence 23789999999999976543221111000 0 00001111111122334679999999999999999999
Q ss_pred HHHHH
Q 014354 309 EESAQ 313 (426)
Q Consensus 309 ~~~~~ 313 (426)
.+.+.
T Consensus 170 ~~~~~ 174 (189)
T cd04134 170 ARVAL 174 (189)
T ss_pred HHHHh
Confidence 87665
No 104
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=4.8e-16 Score=160.48 Aligned_cols=156 Identities=26% Similarity=0.268 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
++|+|+|.||||||||+|+|++..... +...|+++ ++.. .+.+.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~------------v~~~~~~t----~d~~--------------~~~~~------ 45 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAI------------VADTPGVT----RDRI--------------YGEAE------ 45 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee------------eCCCCCCc----ccce--------------EEEEE------
Confidence 579999999999999999999876321 22333332 1111 01111
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHH--HhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~--~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
..+..+.||||||+.... . .....+.... ....+|++|+|+|+..+....+. .+...+
T Consensus 46 -------------~~~~~~~liDT~G~~~~~-~-~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~-----~~~~~l 105 (435)
T PRK00093 46 -------------WLGREFILIDTGGIEPDD-D-GFEKQIREQAELAIEEADVILFVVDGRAGLTPADE-----EIAKIL 105 (435)
T ss_pred -------------ECCcEEEEEECCCCCCcc-h-hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH-----HHHHHH
Confidence 234689999999997621 1 1111222211 12458999999999887665442 233445
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...++|+|+|+||+|+..... ....+. ..++..++++||++|.|+.++++.
T Consensus 106 ~~~~~piilv~NK~D~~~~~~---~~~~~~--------------------------~lg~~~~~~iSa~~g~gv~~l~~~ 156 (435)
T PRK00093 106 RKSNKPVILVVNKVDGPDEEA---DAYEFY--------------------------SLGLGEPYPISAEHGRGIGDLLDA 156 (435)
T ss_pred HHcCCcEEEEEECccCccchh---hHHHHH--------------------------hcCCCCCEEEEeeCCCCHHHHHHH
Confidence 667899999999999765221 111110 012335899999999999999999
Q ss_pred HHH
Q 014354 308 VEE 310 (426)
Q Consensus 308 l~~ 310 (426)
+..
T Consensus 157 I~~ 159 (435)
T PRK00093 157 ILE 159 (435)
T ss_pred HHh
Confidence 987
No 105
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.68 E-value=6e-16 Score=143.09 Aligned_cols=170 Identities=16% Similarity=0.159 Sum_probs=95.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+|+|.+|||||||++++++..+.... .| ++..+... ..+.. .
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~-------------~p-t~~~~~~~----------------~~i~~-----~- 45 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEY-------------IP-TEHRRLYR----------------PAVVL-----S- 45 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCccc-------------CC-ccccccce----------------eEEEE-----C-
Confidence 6899999999999999999987654311 11 11000000 00000 0
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHH--HHhcCCcEEEEEEeCCCCCCchhhhhhHHH-HHHHH
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA--FASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSIL 227 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~--~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~-~~~~l 227 (426)
...+.+.||||||+..+. ...+...... ..-..+|++|+|+|+....+-.. ...... +....
T Consensus 46 ------------~~~~~l~i~Dt~G~~~~~--~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~-~~~~~~~i~~~~ 110 (198)
T cd04142 46 ------------GRVYDLHILDVPNMQRYP--GTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHY-VKLLRQQILETR 110 (198)
T ss_pred ------------CEEEEEEEEeCCCcccCC--ccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHH-HHHHHHHHHHhc
Confidence 122578899999986542 1111111111 11245899999999975332211 111111 11111
Q ss_pred --hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 228 --YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 228 --~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
...++|+|||+||+|+....... .+....+.. . ....+++++||++|.|+.++|
T Consensus 111 ~~~~~~~piiivgNK~Dl~~~~~~~--~~~~~~~~~---------------------~-~~~~~~~e~Sak~g~~v~~lf 166 (198)
T cd04142 111 PAGNKEPPIVVVGNKRDQQRHRFAP--RHVLSVLVR---------------------K-SWKCGYLECSAKYNWHILLLF 166 (198)
T ss_pred ccCCCCCCEEEEEECcccccccccc--HHHHHHHHH---------------------H-hcCCcEEEecCCCCCCHHHHH
Confidence 13568999999999996543111 111111100 0 124679999999999999999
Q ss_pred HHHHHHHHHH
Q 014354 306 KAVEESAQEF 315 (426)
Q Consensus 306 ~~l~~~~~~~ 315 (426)
+.+.......
T Consensus 167 ~~i~~~~~~~ 176 (198)
T cd04142 167 KELLISATTR 176 (198)
T ss_pred HHHHHHhhcc
Confidence 9998765543
No 106
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.68 E-value=6.1e-16 Score=137.74 Aligned_cols=111 Identities=20% Similarity=0.190 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh--ccCCeEEEEecCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTD 242 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~--~~~P~IlVlNKiD 242 (426)
...+.||||||+..+. .+...+ -..+|++++|+|+....+... ...++..+.+ .++|+++|+||+|
T Consensus 48 ~~~~~i~Dt~G~~~~~-------~~~~~~-~~~~d~~i~v~d~~~~~s~~~----~~~~~~~i~~~~~~~p~ivv~nK~D 115 (161)
T cd04124 48 TILVDFWDTAGQERFQ-------TMHASY-YHKAHACILVFDVTRKITYKN----LSKWYEELREYRPEIPCIVVANKID 115 (161)
T ss_pred EEEEEEEeCCCchhhh-------hhhHHH-hCCCCEEEEEEECCCHHHHHH----HHHHHHHHHHhCCCCcEEEEEECcc
Confidence 3678899999987652 111111 135799999999865432211 1122222332 3789999999999
Q ss_pred CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHH
Q 014354 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF 315 (426)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~ 315 (426)
+.... ......+. .. ...+++++||++|.|+.++++.+.+.+.++
T Consensus 116 l~~~~-----~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 116 LDPSV-----TQKKFNFA----------------------EK-HNLPLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred CchhH-----HHHHHHHH----------------------HH-cCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 85321 01111000 11 135799999999999999999998776653
No 107
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.68 E-value=8.3e-16 Score=133.61 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=61.5
Q ss_pred EEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHh
Q 014354 169 VLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF 248 (426)
Q Consensus 169 ~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~ 248 (426)
.+|||||+... +...-..+... ...+|++++|+|+....+.... .+.. ....|+|+|+||+|+.....
T Consensus 38 ~~iDt~G~~~~--~~~~~~~~~~~--~~~ad~vilv~d~~~~~s~~~~-----~~~~---~~~~p~ilv~NK~Dl~~~~~ 105 (142)
T TIGR02528 38 GAIDTPGEYVE--NRRLYSALIVT--AADADVIALVQSATDPESRFPP-----GFAS---IFVKPVIGLVTKIDLAEADV 105 (142)
T ss_pred eeecCchhhhh--hHHHHHHHHHH--hhcCCEEEEEecCCCCCcCCCh-----hHHH---hccCCeEEEEEeeccCCccc
Confidence 58999998321 11111112122 2457999999999876654221 1111 12359999999999875321
Q ss_pred HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354 249 ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE 309 (426)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~ 309 (426)
.. +....+. ......+++++||++|.|+++++++|.
T Consensus 106 ~~---~~~~~~~----------------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 106 DI---ERAKELL----------------------ETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred CH---HHHHHHH----------------------HHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 11 1111110 011234799999999999999998874
No 108
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.68 E-value=3e-16 Score=139.39 Aligned_cols=109 Identities=13% Similarity=0.142 Sum_probs=65.2
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh----hccCCeEEEEecC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY----KTRLPLVLAFNKT 241 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~----~~~~P~IlVlNKi 241 (426)
..+.||||||+.++.. +...+ ...+|++++|+|.....+ |.. ...+...+. ..++|++||+||+
T Consensus 49 ~~l~i~Dt~G~~~~~~-------~~~~~-~~~ad~~i~v~d~~~~~s---~~~-~~~~~~~~~~~~~~~~~piviv~nK~ 116 (163)
T cd04176 49 SVLEILDTAGTEQFAS-------MRDLY-IKNGQGFIVVYSLVNQQT---FQD-IKPMRDQIVRVKGYEKVPIILVGNKV 116 (163)
T ss_pred EEEEEEECCCcccccc-------hHHHH-HhhCCEEEEEEECCCHHH---HHH-HHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 4678999999877521 11111 124689999999865322 111 111111121 2579999999999
Q ss_pred CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354 242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (426)
Q Consensus 242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~ 311 (426)
|+........ .....+. ..+ ..+++++||++|.|+.+++.++.+.
T Consensus 117 Dl~~~~~~~~--~~~~~~~----------------------~~~-~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 117 DLESEREVSS--AEGRALA----------------------EEW-GCPFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred cchhcCccCH--HHHHHHH----------------------HHh-CCEEEEecCCCCCCHHHHHHHHHHh
Confidence 9865321110 0011110 111 2578999999999999999998764
No 109
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.68 E-value=8.6e-16 Score=143.07 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=71.2
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC-eEEEEecCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTD 242 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P-~IlVlNKiD 242 (426)
++.++.||||||+.++. ..+... ...+|++|+|+|+..+...... .....+...+.| +|+|+||+|
T Consensus 75 ~~~~~~liDTpG~~~~~------~~~~~~--~~~ad~~llVvD~~~~~~~~~~-----~~~~~~~~~~~~~iIvviNK~D 141 (208)
T cd04166 75 PKRKFIIADTPGHEQYT------RNMVTG--ASTADLAILLVDARKGVLEQTR-----RHSYILSLLGIRHVVVAVNKMD 141 (208)
T ss_pred CCceEEEEECCcHHHHH------HHHHHh--hhhCCEEEEEEECCCCccHhHH-----HHHHHHHHcCCCcEEEEEEchh
Confidence 45789999999986641 112222 2457999999999887654432 122233444544 677899999
Q ss_pred CCChH--hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHHHhhhh
Q 014354 243 VAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYK 320 (426)
Q Consensus 243 l~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~~~~~ 320 (426)
+.... ....+...+..+... + . +...++|++||++|.|+.+.. +..+||+.
T Consensus 142 ~~~~~~~~~~~i~~~~~~~~~~--------------~-----~-~~~~~ii~iSA~~g~ni~~~~-------~~~~w~~g 194 (208)
T cd04166 142 LVDYSEEVFEEIVADYLAFAAK--------------L-----G-IEDITFIPISALDGDNVVSRS-------ENMPWYSG 194 (208)
T ss_pred cccCCHHHHHHHHHHHHHHHHH--------------c-----C-CCCceEEEEeCCCCCCCccCC-------CCCCCCCC
Confidence 97532 112222222222111 0 0 123569999999999998542 34667665
Q ss_pred hHH
Q 014354 321 ADL 323 (426)
Q Consensus 321 ~~~ 323 (426)
+-+
T Consensus 195 ~~~ 197 (208)
T cd04166 195 PTL 197 (208)
T ss_pred CcH
Confidence 433
No 110
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.68 E-value=4.7e-16 Score=137.58 Aligned_cols=117 Identities=21% Similarity=0.211 Sum_probs=66.2
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
+..+.+|||||+..+. ......+ ..++++|+|+|+.+.............++......++|+++|+||+|+.
T Consensus 43 ~~~l~i~D~~G~~~~~------~~~~~~~--~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 43 HLSLTVWDVGGQEKMR------TVWKCYL--ENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred ceEEEEEECCCCHhHH------HHHHHHh--ccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 3678999999986541 1111112 3479999999997643211111111111111112579999999999986
Q ss_pred ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (426)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~ 310 (426)
......++...+. +.. + ......+++++||++|+|+++++++|.+
T Consensus 115 ~~~~~~~i~~~~~-~~~-------------------~-~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 115 GALTAEEITRRFK-LKK-------------------Y-CSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred cCcCHHHHHHHcC-Ccc-------------------c-CCCCcEEEEecccccCCChHHHHHHHhc
Confidence 4321111211110 000 0 0011246899999999999999998853
No 111
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.67 E-value=5.1e-16 Score=141.43 Aligned_cols=167 Identities=17% Similarity=0.090 Sum_probs=96.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+|+|.+|||||||++++++..+.......+. ..+... +.. .
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~--------~~~~~~-----------------------i~~-----~- 44 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVF--------ENYVTN-----------------------IQG-----P- 44 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCCCeee--------eeeEEE-----------------------EEe-----c-
Confidence 689999999999999999998765432111100 000000 000 0
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-- 228 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-- 228 (426)
......+.||||||+.++. .+.. .....+|++++|+|.....+.... ...+...+.
T Consensus 45 -----------~~~~~~l~i~Dt~G~~~~~-------~~~~-~~~~~ad~ii~v~d~~~~~s~~~~---~~~~~~~~~~~ 102 (187)
T cd04132 45 -----------NGKIIELALWDTAGQEEYD-------RLRP-LSYPDVDVLLICYAVDNPTSLDNV---EDKWFPEVNHF 102 (187)
T ss_pred -----------CCcEEEEEEEECCCchhHH-------HHHH-HhCCCCCEEEEEEECCCHHHHHHH---HHHHHHHHHHh
Confidence 0123578999999987642 1111 112457999999998754322111 111111111
Q ss_pred hccCCeEEEEecCCCCChHhHHHH--HHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 229 KTRLPLVLAFNKTDVAQHEFALEW--MQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
..++|+|||+||+|+......... ......+. ..+...+++++||++|.|+.+++.
T Consensus 103 ~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~----------------------~~~~~~~~~e~Sa~~~~~v~~~f~ 160 (187)
T cd04132 103 CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVA----------------------KKQGAFAYLECSAKTMENVEEVFD 160 (187)
T ss_pred CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHH----------------------HHcCCcEEEEccCCCCCCHHHHHH
Confidence 247899999999998753210000 00111000 112223789999999999999999
Q ss_pred HHHHHHHHHHhh
Q 014354 307 AVEESAQEFMET 318 (426)
Q Consensus 307 ~l~~~~~~~~~~ 318 (426)
.+...+......
T Consensus 161 ~l~~~~~~~~~~ 172 (187)
T cd04132 161 TAIEEALKKEGK 172 (187)
T ss_pred HHHHHHHhhhhh
Confidence 999887765433
No 112
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.67 E-value=5.5e-16 Score=140.19 Aligned_cols=116 Identities=18% Similarity=0.154 Sum_probs=68.1
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~ 245 (426)
+.+.||||||+.++. .+...+ ...++.+++|+|............-....+......++|+|+|+||+|+..
T Consensus 49 ~~~~l~D~~g~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 49 YHLEIVDTAGQDEYS-------ILPQKY-SIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT 120 (180)
T ss_pred EEEEEEECCChHhhH-------HHHHHH-HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh
Confidence 577899999987641 111111 123678888888875432221111011122222235789999999999875
Q ss_pred hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
..... ......+.. .+ ..+++++||++|.|+.+++.++.+.+..
T Consensus 121 ~~~~~--~~~~~~~~~---------------------~~--~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 121 QRQVS--TEEGKELAE---------------------SW--GAAFLESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred cCccC--HHHHHHHHH---------------------Hc--CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 32111 001111100 11 2578999999999999999999876644
No 113
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.67 E-value=3.3e-16 Score=141.66 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=67.8
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh---hccCCeEEEEec
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNK 240 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~---~~~~P~IlVlNK 240 (426)
....+.||||||+..+. .+...+ -..++++|+|+|++...+ +..........+. ..+.|++||+||
T Consensus 55 ~~~~l~l~D~~G~~~~~-------~~~~~~-~~~ad~ii~v~D~t~~~s---~~~~~~~l~~~~~~~~~~~~piilv~NK 123 (175)
T smart00177 55 KNISFTVWDVGGQDKIR-------PLWRHY-YTNTQGLIFVVDSNDRDR---IDEAREELHRMLNEDELRDAVILVFANK 123 (175)
T ss_pred CCEEEEEEECCCChhhH-------HHHHHH-hCCCCEEEEEEECCCHHH---HHHHHHHHHHHhhCHhhcCCcEEEEEeC
Confidence 34688999999986641 122221 134799999999875321 1111111111111 135899999999
Q ss_pred CCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA 312 (426)
Q Consensus 241 iDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~ 312 (426)
+|+.......++...+. +.. .....+.++++||++|.|+.+++++|...+
T Consensus 124 ~Dl~~~~~~~~i~~~~~-~~~---------------------~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 124 QDLPDAMKAAEITEKLG-LHS---------------------IRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred cCcccCCCHHHHHHHhC-ccc---------------------cCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 99875422112221111 000 001123477999999999999999997654
No 114
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.67 E-value=8.5e-16 Score=142.10 Aligned_cols=188 Identities=16% Similarity=0.147 Sum_probs=110.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHH-HHHHH--HHcCCCCCCCccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIR-YKEVM--KQFNLGPNGGILTSL 145 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~-~~~~~--~~~~l~~ng~i~~~~ 145 (426)
+..|+|+|++|||||||++++++..... ..+.++..+.... . + ..... ..-+. ....+..++|.||+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d~~~~--~-----~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 71 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQK-YQLAVITNDIYTQ--E-----D-AEFLVKNSALPPERILGVETGGCPHTAI 71 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcC-CcEEEEeCCcCCh--h-----H-HHHHHHcCCCCcCceehhhcCCCcccee
Confidence 3579999999999999999999875443 3355555443210 0 0 00000 00000 011233567888865
Q ss_pred ccccccHHHHHHHHHH--HhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354 146 NLFTTKFDEVISLIER--RADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~--~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~ 223 (426)
+ .........+..- ...+.+++||+|.|..-.. .+ ....++.+|+|+|+.++......
T Consensus 72 ~--~~~~~~~~~L~~l~~~~~~~D~iiIEt~G~~l~~-------~~----~~~l~~~~i~vvD~~~~~~~~~~------- 131 (199)
T TIGR00101 72 R--EDASMNLEAVAEMEARFPPLEMVFIESGGDNLSA-------TF----SPELADLTIFVIDVAAGDKIPRK------- 131 (199)
T ss_pred c--cCHHHHHHHHHHHHhcCCCCCEEEEECCCCCccc-------cc----chhhhCcEEEEEEcchhhhhhhh-------
Confidence 4 2222222222211 2246899999999942110 00 01124779999999876542211
Q ss_pred HHHHhhccCCeEEEEecCCCCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354 224 CSILYKTRLPLVLAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (426)
Q Consensus 224 ~~~l~~~~~P~IlVlNKiDl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv 301 (426)
...+..++.++|+||+|+.+. ..+....+.++ .+.+..+++.+||++|+|+
T Consensus 132 --~~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~-------------------------~~~~~~~i~~~Sa~~g~gi 184 (199)
T TIGR00101 132 --GGPGITRSDLLVINKIDLAPMVGADLGVMERDAK-------------------------KMRGEKPFIFTNLKTKEGL 184 (199)
T ss_pred --hHhHhhhccEEEEEhhhccccccccHHHHHHHHH-------------------------HhCCCCCEEEEECCCCCCH
Confidence 123556788999999999853 22222233332 2234578999999999999
Q ss_pred HHHHHHHHHHH
Q 014354 302 EAYFKAVEESA 312 (426)
Q Consensus 302 ~~l~~~l~~~~ 312 (426)
.+++++|.+++
T Consensus 185 ~el~~~i~~~~ 195 (199)
T TIGR00101 185 DTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHHhhc
Confidence 99999998653
No 115
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.67 E-value=2.8e-16 Score=140.95 Aligned_cols=160 Identities=19% Similarity=0.236 Sum_probs=92.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|++|||||||+++|.+..... ...+..+.. ..+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~---------------~~~t~g~~~-------------------~~i~---- 54 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH---------------ITPTQGFNI-------------------KTVQ---- 54 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc---------------cCCCCCcce-------------------EEEE----
Confidence 45789999999999999999999864321 000100000 0000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
..+..+.+|||||+..+. ......+ ..++++++|+|+....................
T Consensus 55 ---------------~~~~~~~~~D~~G~~~~~------~~~~~~~--~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~ 111 (173)
T cd04155 55 ---------------SDGFKLNVWDIGGQRAIR------PYWRNYF--ENTDCLIYVIDSADKKRLEEAGAELVELLEEE 111 (173)
T ss_pred ---------------ECCEEEEEEECCCCHHHH------HHHHHHh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh
Confidence 124678999999985531 1111112 35789999999975321111010001111112
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...++|+++++||+|+........+...+. .. .-.....+++++||++|.|+++++++
T Consensus 112 ~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~---------------------~~-~~~~~~~~~~~~Sa~~~~gi~~~~~~ 169 (173)
T cd04155 112 KLAGVPVLVFANKQDLATAAPAEEIAEALN---------------------LH-DLRDRTWHIQACSAKTGEGLQEGMNW 169 (173)
T ss_pred hhcCCCEEEEEECCCCccCCCHHHHHHHcC---------------------Cc-ccCCCeEEEEEeECCCCCCHHHHHHH
Confidence 235799999999999976543222222111 00 00011235789999999999999999
Q ss_pred HHH
Q 014354 308 VEE 310 (426)
Q Consensus 308 l~~ 310 (426)
|.+
T Consensus 170 l~~ 172 (173)
T cd04155 170 VCK 172 (173)
T ss_pred Hhc
Confidence 864
No 116
>PTZ00369 Ras-like protein; Provisional
Probab=99.67 E-value=6e-16 Score=141.71 Aligned_cols=163 Identities=14% Similarity=0.187 Sum_probs=94.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
.++|+|+|.+|||||||++++.+..+..... |... ...+. .+...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~-------~t~~-------~~~~~-----------------~~~~~---- 49 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYD-------PTIE-------DSYRK-----------------QCVID---- 49 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcC-------Cchh-------hEEEE-----------------EEEEC----
Confidence 4689999999999999999999876432110 1000 00000 00000
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH-HHHHH
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSIL 227 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~-~~~~l 227 (426)
.....+.||||||+.++. .+...+ ...++++++|+|.+...+-... ..... +....
T Consensus 50 --------------~~~~~l~i~Dt~G~~~~~-------~l~~~~-~~~~d~iilv~D~s~~~s~~~~-~~~~~~i~~~~ 106 (189)
T PTZ00369 50 --------------EETCLLDILDTAGQEEYS-------AMRDQY-MRTGQGFLCVYSITSRSSFEEI-ASFREQILRVK 106 (189)
T ss_pred --------------CEEEEEEEEeCCCCccch-------hhHHHH-hhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhc
Confidence 123567899999998762 122211 1346899999998754321111 11111 11111
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...++|+|||+||+|+........ .....+. ..+ ..+++.+||++|.|+.+++.+
T Consensus 107 ~~~~~piiiv~nK~Dl~~~~~i~~--~~~~~~~----------------------~~~-~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 107 DKDRVPMILVGNKCDLDSERQVST--GEGQELA----------------------KSF-GIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred CCCCCCEEEEEECcccccccccCH--HHHHHHH----------------------HHh-CCEEEEeeCCCCCCHHHHHHH
Confidence 234789999999999865321110 0000000 111 257999999999999999999
Q ss_pred HHHHHHH
Q 014354 308 VEESAQE 314 (426)
Q Consensus 308 l~~~~~~ 314 (426)
|.+.+..
T Consensus 162 l~~~l~~ 168 (189)
T PTZ00369 162 LVREIRK 168 (189)
T ss_pred HHHHHHH
Confidence 9887654
No 117
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.67 E-value=6.6e-16 Score=164.78 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=78.7
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCe-EEEEecCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPL-VLAFNKTDVA 244 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~-IlVlNKiDl~ 244 (426)
..+.||||||+.++. ..+...+ ..+|++++|||+..+..+++. ..+..+...++|. |+|+||+|++
T Consensus 51 ~~i~~IDtPGhe~fi------~~m~~g~--~~~D~~lLVVda~eg~~~qT~-----ehl~il~~lgi~~iIVVlNKiDlv 117 (614)
T PRK10512 51 RVLGFIDVPGHEKFL------SNMLAGV--GGIDHALLVVACDDGVMAQTR-----EHLAILQLTGNPMLTVALTKADRV 117 (614)
T ss_pred cEEEEEECCCHHHHH------HHHHHHh--hcCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCeEEEEEECCccC
Confidence 457899999996641 2222222 457999999999998877663 3344455667785 7899999998
Q ss_pred ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (426)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~ 313 (426)
+..........+..+... ..+.+.++|++||++|.|+++|+++|.....
T Consensus 118 ~~~~~~~v~~ei~~~l~~--------------------~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 118 DEARIAEVRRQVKAVLRE--------------------YGFAEAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred CHHHHHHHHHHHHHHHHh--------------------cCCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 765443344444322211 1123478999999999999999999986543
No 118
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.67 E-value=1e-15 Score=136.75 Aligned_cols=159 Identities=14% Similarity=0.201 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|+++|.+|||||||++++++..+..... |.+ +..+.... +..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~-------~t~-----~~~~~~~~------------------~~~------ 45 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFV-------STV-----GIDFKVKT------------------VFR------ 45 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC-------Cce-----eeEEEEEE------------------EEE------
Confidence 579999999999999999999876532111 100 00000000 000
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY- 228 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~- 228 (426)
......+.||||||+.++. .+...+ ...++++++|+|..... .+. ....++..+.
T Consensus 46 ------------~~~~~~~~l~Dt~g~~~~~-------~~~~~~-~~~~~~~l~v~d~~~~~---s~~-~~~~~~~~i~~ 101 (165)
T cd01865 46 ------------NDKRVKLQIWDTAGQERYR-------TITTAY-YRGAMGFILMYDITNEE---SFN-AVQDWSTQIKT 101 (165)
T ss_pred ------------CCEEEEEEEEECCChHHHH-------HHHHHH-ccCCcEEEEEEECCCHH---HHH-HHHHHHHHHHH
Confidence 0123578999999986642 111111 23579999999986432 111 1112222222
Q ss_pred --hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 229 --KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 229 --~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
....|+++|+||+|+....... ......+. ... ..+++++||++|.|+.++++
T Consensus 102 ~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~~-~~~~~~~Sa~~~~gv~~l~~ 156 (165)
T cd01865 102 YSWDNAQVILVGNKCDMEDERVVS--SERGRQLA----------------------DQL-GFEFFEASAKENINVKQVFE 156 (165)
T ss_pred hCCCCCCEEEEEECcccCcccccC--HHHHHHHH----------------------HHc-CCEEEEEECCCCCCHHHHHH
Confidence 2368999999999997643211 01111110 111 24699999999999999999
Q ss_pred HHHHHHH
Q 014354 307 AVEESAQ 313 (426)
Q Consensus 307 ~l~~~~~ 313 (426)
++...+.
T Consensus 157 ~l~~~~~ 163 (165)
T cd01865 157 RLVDIIC 163 (165)
T ss_pred HHHHHHH
Confidence 9987654
No 119
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.67 E-value=1.3e-15 Score=136.13 Aligned_cols=162 Identities=19% Similarity=0.249 Sum_probs=93.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+|+|.+|||||||++++++..+... .+.+. -... + ...+.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~--------------~~~~~-~~~~--~--------------~~~~~------- 43 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN--------------VPRVL-PEIT--I--------------PADVT------- 43 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc--------------CCCcc-cceE--e--------------eeeec-------
Confidence 689999999999999999998765321 11000 0000 0 00000
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhc
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT 230 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~ 230 (426)
....++.+|||||..+.. ..+...+ ..+|++++|+|.....+...........+... ..
T Consensus 44 ------------~~~~~~~i~Dt~G~~~~~------~~~~~~~--~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~-~~ 102 (166)
T cd01893 44 ------------PERVPTTIVDTSSRPQDR------ANLAAEI--RKANVICLVYSVDRPSTLERIRTKWLPLIRRL-GV 102 (166)
T ss_pred ------------CCeEEEEEEeCCCchhhh------HHHhhhc--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CC
Confidence 234688999999986541 1111222 45789999999865332211000011111111 23
Q ss_pred cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354 231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (426)
Q Consensus 231 ~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~ 310 (426)
++|+++|+||+|+............+..+. ..+....+++++||++|.|+.+++..+.+
T Consensus 103 ~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 161 (166)
T cd01893 103 KVPIILVGNKSDLRDGSSQAGLEEEMLPIM---------------------NEFREIETCVECSAKTLINVSEVFYYAQK 161 (166)
T ss_pred CCCEEEEEEchhcccccchhHHHHHHHHHH---------------------HHHhcccEEEEeccccccCHHHHHHHHHH
Confidence 789999999999976543211111111110 01212236999999999999999998877
Q ss_pred HH
Q 014354 311 SA 312 (426)
Q Consensus 311 ~~ 312 (426)
.+
T Consensus 162 ~~ 163 (166)
T cd01893 162 AV 163 (166)
T ss_pred Hh
Confidence 54
No 120
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.67 E-value=2.9e-16 Score=141.80 Aligned_cols=156 Identities=16% Similarity=0.244 Sum_probs=90.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..+|+++|++|||||||+++|++..+.. ..|.+ +. . .....
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~--------~~~t~-----~~--~----------------------~~~~~-- 55 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH--------TSPTI-----GS--N----------------------VEEIV-- 55 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC--------cCCcc-----cc--c----------------------eEEEE--
Confidence 4689999999999999999998754321 00100 00 0 00000
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~ 228 (426)
.....+.||||||+..+. ......+ ..+|++++|+|++.... +..........+.
T Consensus 56 --------------~~~~~~~l~D~~G~~~~~------~~~~~~~--~~~d~vi~V~D~s~~~~---~~~~~~~l~~~~~ 110 (174)
T cd04153 56 --------------YKNIRFLMWDIGGQESLR------SSWNTYY--TNTDAVILVIDSTDRER---LPLTKEELYKMLA 110 (174)
T ss_pred --------------ECCeEEEEEECCCCHHHH------HHHHHHh--hcCCEEEEEEECCCHHH---HHHHHHHHHHHHh
Confidence 134689999999986541 1111122 35799999999876422 1111111112222
Q ss_pred ---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 229 ---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 229 ---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
..++|+++|+||+|+.......++.+.+ +..... ....+++++||++|.|+++++
T Consensus 111 ~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l---------------------~~~~~~-~~~~~~~~~SA~~g~gi~e~~ 168 (174)
T cd04153 111 HEDLRKAVLLVLANKQDLKGAMTPAEISESL---------------------GLTSIR-DHTWHIQGCCALTGEGLPEGL 168 (174)
T ss_pred chhhcCCCEEEEEECCCCCCCCCHHHHHHHh---------------------Cccccc-CCceEEEecccCCCCCHHHHH
Confidence 2368999999999986532111111111 000000 012468999999999999999
Q ss_pred HHHHH
Q 014354 306 KAVEE 310 (426)
Q Consensus 306 ~~l~~ 310 (426)
++|..
T Consensus 169 ~~l~~ 173 (174)
T cd04153 169 DWIAS 173 (174)
T ss_pred HHHhc
Confidence 99864
No 121
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.67 E-value=1e-15 Score=137.12 Aligned_cols=160 Identities=18% Similarity=0.216 Sum_probs=94.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..+|+|+|.+|||||||++++++..+..... .+...+.. ...+.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~--------------~t~~~~~~-----------------~~~~~----- 47 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--------------LTIGVEFG-----------------ARMIT----- 47 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------------CccceeEE-----------------EEEEE-----
Confidence 4689999999999999999999876433111 01000000 00000
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~ 228 (426)
. ......+.||||||+.++. .+...+ ...+|++|+|+|+.... .+. ....+...+.
T Consensus 48 ~------------~~~~~~~~i~Dt~G~~~~~-------~~~~~~-~~~~d~il~v~d~~~~~---s~~-~~~~~~~~~~ 103 (168)
T cd01866 48 I------------DGKQIKLQIWDTAGQESFR-------SITRSY-YRGAAGALLVYDITRRE---TFN-HLTSWLEDAR 103 (168)
T ss_pred E------------CCEEEEEEEEECCCcHHHH-------HHHHHH-hccCCEEEEEEECCCHH---HHH-HHHHHHHHHH
Confidence 0 0122578999999986541 111111 13579999999987422 211 1122222222
Q ss_pred ---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 229 ---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 229 ---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
..++|+|+|+||+|+....... ......+.. . ....++++||++|+|+++++
T Consensus 104 ~~~~~~~pvivv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~e~Sa~~~~~i~~~~ 158 (168)
T cd01866 104 QHSNSNMTIMLIGNKCDLESRREVS--YEEGEAFAK---------------------E--HGLIFMETSAKTASNVEEAF 158 (168)
T ss_pred HhCCCCCcEEEEEECcccccccCCC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHH
Confidence 2478999999999997533210 011111110 1 13569999999999999999
Q ss_pred HHHHHHHH
Q 014354 306 KAVEESAQ 313 (426)
Q Consensus 306 ~~l~~~~~ 313 (426)
.++.+.+.
T Consensus 159 ~~~~~~~~ 166 (168)
T cd01866 159 INTAKEIY 166 (168)
T ss_pred HHHHHHHH
Confidence 99987764
No 122
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.67 E-value=1.8e-15 Score=140.84 Aligned_cols=183 Identities=14% Similarity=0.168 Sum_probs=109.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
...++|+|+|++|||||||+++++.... .+.+++++..++.. .++ ...+...-...-...+||+||..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~-------~~D---~~~~~~~~~~~~~l~~gcic~~~- 87 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVIT-------KFD---AERLRKYGAPAIQINTGKECHLD- 87 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCCC-------ccc---HHHHHHcCCcEEEEcCCCcccCC-
Confidence 3578999999999999999999998753 23577777766532 111 11111100112233578888742
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCc-ccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi-~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
...+...+. .....+++++||||.|. ..+. . + .......+.|+|+..+..... .
T Consensus 88 --~~~~~~~l~--~~~~~~~d~IiIEt~G~l~~~~------~-----~-~~~~~~~i~Vvd~~~~d~~~~---------~ 142 (207)
T TIGR00073 88 --AHMVAHALE--DLPLDDIDLLFIENVGNLVCPA------D-----F-DLGEHMRVVLLSVTEGDDKPL---------K 142 (207)
T ss_pred --hHHHHHHHH--HhccCCCCEEEEecCCCcCCCc------c-----c-ccccCeEEEEEecCcccchhh---------h
Confidence 111211111 11123689999999993 2211 0 0 012355678888875443211 1
Q ss_pred HHhhccCCeEEEEecCCCCChH--hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
.....+.|.++|+||+|+.... ........++ ...+..+++++||++|.|+.+
T Consensus 143 ~~~~~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~-------------------------~~~~~~~i~~~Sa~~g~gv~~ 197 (207)
T TIGR00073 143 YPGMFKEADLIVINKADLAEAVGFDVEKMKADAK-------------------------KINPEAEIILMSLKTGEGLDE 197 (207)
T ss_pred hHhHHhhCCEEEEEHHHccccchhhHHHHHHHHH-------------------------HhCCCCCEEEEECCCCCCHHH
Confidence 1223467899999999998642 1222222221 123457899999999999999
Q ss_pred HHHHHHHH
Q 014354 304 YFKAVEES 311 (426)
Q Consensus 304 l~~~l~~~ 311 (426)
+++++.+.
T Consensus 198 l~~~i~~~ 205 (207)
T TIGR00073 198 WLEFLEGQ 205 (207)
T ss_pred HHHHHHHh
Confidence 99999764
No 123
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.66 E-value=1.1e-15 Score=136.40 Aligned_cols=162 Identities=15% Similarity=0.204 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|+++|++|||||||++++++..+..... + +..++... ..+.. .
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~-------------~-t~~~~~~~-----------------~~~~~----~ 47 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYI-------------S-TIGVDFKI-----------------RTIEL----D 47 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCC-------------C-ccceeEEE-----------------EEEEE----C
Confidence 679999999999999999999875432110 0 00000000 00000 0
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~ 229 (426)
.....+.||||||+..+. .+...+ ...++++|+|+|+....+-.. ....+..+.....
T Consensus 48 -------------~~~~~~~i~D~~G~~~~~-------~~~~~~-~~~~~~ii~v~d~~~~~s~~~-l~~~~~~~~~~~~ 105 (166)
T cd01869 48 -------------GKTIKLQIWDTAGQERFR-------TITSSY-YRGAHGIIIVYDVTDQESFNN-VKQWLQEIDRYAS 105 (166)
T ss_pred -------------CEEEEEEEEECCCcHhHH-------HHHHHH-hCcCCEEEEEEECcCHHHHHh-HHHHHHHHHHhCC
Confidence 123578999999986641 111111 135799999999975322111 1111111111222
Q ss_pred ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354 230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE 309 (426)
Q Consensus 230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~ 309 (426)
.++|+|+|+||+|+....... .+....+. . ....+++++||++|.|+.+++..|.
T Consensus 106 ~~~~~iiv~nK~Dl~~~~~~~--~~~~~~~~----------------------~-~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 106 ENVNKLLVGNKCDLTDKRVVD--YSEAQEFA----------------------D-ELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred CCCcEEEEEEChhcccccCCC--HHHHHHHH----------------------H-HcCCeEEEEECCCCcCHHHHHHHHH
Confidence 468999999999987543211 01111110 1 1235799999999999999999998
Q ss_pred HHHH
Q 014354 310 ESAQ 313 (426)
Q Consensus 310 ~~~~ 313 (426)
+.+.
T Consensus 161 ~~~~ 164 (166)
T cd01869 161 REIK 164 (166)
T ss_pred HHHH
Confidence 7653
No 124
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.66 E-value=7.9e-16 Score=136.28 Aligned_cols=112 Identities=18% Similarity=0.166 Sum_probs=69.2
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh---hccCCeEEEEecCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKTD 242 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~---~~~~P~IlVlNKiD 242 (426)
.++.+|||||+..+. .+...+ ...+|++++|+|+.+..+.... ..++..+. ..++|+++|+||+|
T Consensus 49 ~~~~l~D~~G~~~~~-------~~~~~~-~~~~d~~ilv~d~~~~~s~~~~----~~~l~~~~~~~~~~~pivvv~nK~D 116 (164)
T smart00175 49 VKLQIWDTAGQERFR-------SITSSY-YRGAVGALLVYDITNRESFENL----KNWLKELREYADPNVVIMLVGNKSD 116 (164)
T ss_pred EEEEEEECCChHHHH-------HHHHHH-hCCCCEEEEEEECCCHHHHHHH----HHHHHHHHHhCCCCCeEEEEEEchh
Confidence 578899999986541 111111 1447999999999753332211 11222222 24799999999999
Q ss_pred CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
+....... .+....+. .. ...+++++||.+|.|+.+++++|.+.+.+
T Consensus 117 ~~~~~~~~--~~~~~~~~----------------------~~-~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 117 LEDQRQVS--REEAEAFA----------------------EE-HGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred cccccCCC--HHHHHHHH----------------------HH-cCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 87632110 00111110 11 13569999999999999999999987653
No 125
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.66 E-value=9.3e-16 Score=138.15 Aligned_cols=161 Identities=20% Similarity=0.138 Sum_probs=93.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+++|.+|||||||++++++..+....... +........ +..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t-------~~~~~~~~~-----------------------~~~------- 44 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKAT-------IGVDFEMER-----------------------FEI------- 44 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-------eeeEEEEEE-----------------------EEE-------
Confidence 5899999999999999999998654322111 000000000 000
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-- 228 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-- 228 (426)
......+.||||||+.++. .+... .-..+|++++|+|+.... .+.. ...+...+.
T Consensus 45 -----------~~~~~~l~i~Dt~G~~~~~-------~~~~~-~~~~ad~~ilv~d~~~~~---s~~~-~~~~~~~~~~~ 101 (170)
T cd04108 45 -----------LGVPFSLQLWDTAGQERFK-------CIAST-YYRGAQAIIIVFDLTDVA---SLEH-TRQWLEDALKE 101 (170)
T ss_pred -----------CCEEEEEEEEeCCChHHHH-------hhHHH-HhcCCCEEEEEEECcCHH---HHHH-HHHHHHHHHHh
Confidence 0123578999999997652 11111 124579999999996521 1111 111222221
Q ss_pred --hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 229 --KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 229 --~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
....|+++|.||+|+...............+.. . + ..+++.+||++|.|+.+++.
T Consensus 102 ~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~---------------------~-~-~~~~~e~Sa~~g~~v~~lf~ 158 (170)
T cd04108 102 NDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA---------------------E-M-QAEYWSVSALSGENVREFFF 158 (170)
T ss_pred cCCCCCeEEEEEEChhcCccccccccHHHHHHHHH---------------------H-c-CCeEEEEECCCCCCHHHHHH
Confidence 123568999999998654321101111111100 1 1 24689999999999999999
Q ss_pred HHHHHHHH
Q 014354 307 AVEESAQE 314 (426)
Q Consensus 307 ~l~~~~~~ 314 (426)
.|...+.+
T Consensus 159 ~l~~~~~~ 166 (170)
T cd04108 159 RVAALTFE 166 (170)
T ss_pred HHHHHHHH
Confidence 99887754
No 126
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.66 E-value=7.7e-16 Score=163.64 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=79.0
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC-eEEEEecCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDVA 244 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P-~IlVlNKiDl~ 244 (426)
..+.||||||+..+. ..+... ...+|++++|||+..+..++++. .+..+...++| .|+|+||+|++
T Consensus 50 ~~v~~iDtPGhe~f~------~~~~~g--~~~aD~aILVVDa~~G~~~qT~e-----hl~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 50 YRLGFIDVPGHEKFI------SNAIAG--GGGIDAALLVVDADEGVMTQTGE-----HLAVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred EEEEEEECCCHHHHH------HHHHhh--hccCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCeEEEEEECCCCC
Confidence 678999999986541 112211 24579999999999887665532 23345567888 99999999999
Q ss_pred ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
+..........+..+... . .+....++|++||++|.|+.+++.+|...+..
T Consensus 117 ~~~~~~~~~~ei~~~l~~--------------~-----~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 117 NEEEIKRTEMFMKQILNS--------------Y-----IFLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred CHHHHHHHHHHHHHHHHH--------------h-----CCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 866433333333322211 0 01125789999999999999999888766544
No 127
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.66 E-value=1.7e-15 Score=134.98 Aligned_cols=108 Identities=10% Similarity=0.039 Sum_probs=66.8
Q ss_pred EEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhH
Q 014354 170 LVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFA 249 (426)
Q Consensus 170 liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~ 249 (426)
+|||||+.... ......+... ...+|++++|+|+....+....+ ... + ..++|+++++||+|+.... .
T Consensus 41 ~iDtpG~~~~~--~~~~~~~~~~--~~~ad~il~v~d~~~~~s~~~~~-----~~~-~-~~~~~ii~v~nK~Dl~~~~-~ 108 (158)
T PRK15467 41 DIDTPGEYFSH--PRWYHALITT--LQDVDMLIYVHGANDPESRLPAG-----LLD-I-GVSKRQIAVISKTDMPDAD-V 108 (158)
T ss_pred cccCCccccCC--HHHHHHHHHH--HhcCCEEEEEEeCCCcccccCHH-----HHh-c-cCCCCeEEEEEccccCccc-H
Confidence 69999985431 1111222222 23579999999998765432211 111 1 2367999999999986532 1
Q ss_pred HHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 250 LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 250 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
..+.+.+. ......+++++||++|.|+.++++++.+.+..
T Consensus 109 ~~~~~~~~-------------------------~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 109 AATRKLLL-------------------------ETGFEEPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred HHHHHHHH-------------------------HcCCCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence 11111111 11112589999999999999999999887755
No 128
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.66 E-value=1.5e-15 Score=137.09 Aligned_cols=162 Identities=14% Similarity=0.180 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|+++|.+|||||||++++.+..+..... |.+.. .+.. .+..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~-------~t~~~-~~~~-----------------------~~~~------ 45 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHD-------PTIED-AYKQ-----------------------QARI------ 45 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcC-------Ccccc-eEEE-----------------------EEEE------
Confidence 579999999999999999999876542111 11100 0000 0000
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY- 228 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~- 228 (426)
......+.||||||+.++. .+...+- ..++++|+|+|..+..+..... .....+....
T Consensus 46 ------------~~~~~~l~i~Dt~G~~~~~-------~l~~~~~-~~~d~~ilv~d~~~~~Sf~~~~-~~~~~i~~~~~ 104 (172)
T cd04141 46 ------------DNEPALLDILDTAGQAEFT-------AMRDQYM-RCGEGFIICYSVTDRHSFQEAS-EFKKLITRVRL 104 (172)
T ss_pred ------------CCEEEEEEEEeCCCchhhH-------HHhHHHh-hcCCEEEEEEECCchhHHHHHH-HHHHHHHHhcC
Confidence 0123578899999997652 2222211 2368899999986544322211 1111122222
Q ss_pred hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l 308 (426)
..++|+|+|+||+|+.....+. ......+ + ..+ ..+++++||++|.||+++|.+|
T Consensus 105 ~~~~piilvgNK~Dl~~~~~v~--~~~~~~~------------------a----~~~-~~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 105 TEDIPLVLVGNKVDLESQRQVT--TEEGRNL------------------A----REF-NCPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred CCCCCEEEEEEChhhhhcCccC--HHHHHHH------------------H----HHh-CCEEEEEecCCCCCHHHHHHHH
Confidence 3478999999999986543111 0011101 0 111 3579999999999999999999
Q ss_pred HHHHHH
Q 014354 309 EESAQE 314 (426)
Q Consensus 309 ~~~~~~ 314 (426)
...+..
T Consensus 160 ~~~~~~ 165 (172)
T cd04141 160 VREIRR 165 (172)
T ss_pred HHHHHH
Confidence 876543
No 129
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=99.66 E-value=1e-15 Score=144.56 Aligned_cols=193 Identities=17% Similarity=0.186 Sum_probs=125.0
Q ss_pred CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccc-cccccccccchhhhHHHHHHHHHcCCCCCCCcc
Q 014354 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-MTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL 142 (426)
Q Consensus 64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v-~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~ 142 (426)
....+.|+.+|.|+.|||||||||+|+... ++++++|+-+.-+- +.+...-.+.....--|++++.. .|||+|
T Consensus 52 ~~~~rIPvtIITGyLGaGKtTLLn~Il~~~--hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L----~NGClC 125 (391)
T KOG2743|consen 52 SLGARIPVTIITGYLGAGKTTLLNYILTGQ--HGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVEL----RNGCLC 125 (391)
T ss_pred CCCCccceEEEEecccCChHHHHHHHHccC--CCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHh----cCCeEE
Confidence 345677899999999999999999999764 56677776544221 00000000000001124555543 379999
Q ss_pred cccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-------cCCcEEEEEEeCCCCCCchh
Q 014354 143 TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-------TFPTVVTYVVDTPRSANPMT 215 (426)
Q Consensus 143 ~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-------~~~d~vl~VVDa~~~~~~~~ 215 (426)
|+++ ..+++-+-.+.+ ..+.+++++++|.|+..|. -+..+|.. -..|.+|.|||+.+.....+
T Consensus 126 CtVk--~~gvraie~lvq-kkGkfD~IllETTGlAnPa-------Pia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Ld 195 (391)
T KOG2743|consen 126 CTVK--DNGVRAIENLVQ-KKGKFDHILLETTGLANPA-------PIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLD 195 (391)
T ss_pred EEec--chHHHHHHHHHh-cCCCcceEEEeccCCCCcH-------HHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhc
Confidence 9965 556666666666 5677999999999999983 33344422 23689999999987654322
Q ss_pred hhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcC
Q 014354 216 FMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKN 287 (426)
Q Consensus 216 ~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 287 (426)
-.+..-.+-....|...+.-|++||.|++..+.+..+++.+..++. ++.+++..|+.
T Consensus 196 e~k~~g~i~EA~~QiA~AD~II~NKtDli~~e~~~~l~q~I~~INs---------------lA~m~~Tky~~ 252 (391)
T KOG2743|consen 196 EEKPDGLINEATRQIALADRIIMNKTDLVSEEEVKKLRQRIRSINS---------------LAQMIETKYSR 252 (391)
T ss_pred ccCcccchHHHHHHHhhhheeeeccccccCHHHHHHHHHHHHHhhh---------------HHHhhhhhhcc
Confidence 1111111222344667788999999999999988888888876654 36666666663
No 130
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.66 E-value=1.3e-15 Score=132.53 Aligned_cols=118 Identities=23% Similarity=0.249 Sum_probs=78.9
Q ss_pred CCCEEEEcCCCcccccchhchH-HHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASG-AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~-~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl 243 (426)
...+.||||||+.+........ ......+ ..+|++++|+|+.......... +.......+.|.++|+||+|+
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~--~~~d~il~v~~~~~~~~~~~~~-----~~~~~~~~~~~~ivv~nK~D~ 116 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVL--ERADLILFVVDADLRADEEEEK-----LLELLRERGKPVLLVLNKIDL 116 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHH--HhCCEEEEEEeCCCCCCHHHHH-----HHHHHHhcCCeEEEEEEcccc
Confidence 4689999999998763222111 1111122 3479999999998876554421 233455678999999999999
Q ss_pred CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (426)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~ 311 (426)
........+..... .........+++++||++|.|+.++++++.+.
T Consensus 117 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 117 LPEEEEEELLELRL----------------------LILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred CChhhHHHHHHHHH----------------------hhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 98764433321000 00123456789999999999999999998764
No 131
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.66 E-value=8e-16 Score=137.90 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
...+.+|||||+..+.. +...+ ...+|++|+|+|.....+-.. ....+..+... ..++|+|+|+||+|+.
T Consensus 48 ~~~l~i~Dt~G~~~~~~-------~~~~~-~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~-~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 48 KIRFNVWDTAGQEKFGG-------LRDGY-YIGGQCAIIMFDVTSRVTYKN-VPNWHRDLVRV-CGNIPIVLCGNKVDIK 117 (166)
T ss_pred EEEEEEEECCCChhhcc-------ccHHH-hcCCCEEEEEEECCCHHHHHH-HHHHHHHHHHh-CCCCcEEEEEEchhcc
Confidence 36789999999976421 11111 134799999999875432211 11111111111 1279999999999997
Q ss_pred ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
........ ..+. . ....+++++||++|.|+.+++++|.+.+..
T Consensus 118 ~~~~~~~~----~~~~----------------------~-~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 118 DRKVKAKQ----ITFH----------------------R-KKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred cccCCHHH----HHHH----------------------H-HcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 43211100 0000 0 123579999999999999999999987654
No 132
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.66 E-value=7.8e-16 Score=138.35 Aligned_cols=171 Identities=13% Similarity=0.153 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|+|+|++|||||||++++.+..+..... | +. . ... ...+.. .
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~-------------~-t~--~--~~~-------------~~~~~~-----~ 45 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYV-------------P-TV--F--ENY-------------VADIEV-----D 45 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCC-------------C-cc--c--cce-------------EEEEEE-----C
Confidence 469999999999999999999876542111 0 00 0 000 000000 0
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~ 229 (426)
.....+.||||||+.++.. +.. .....+|++++|.|.....+-.... ..+...+.+
T Consensus 46 -------------~~~~~l~i~Dt~G~~~~~~-------~~~-~~~~~~d~~i~v~~~~~~~s~~~~~---~~~~~~~~~ 101 (175)
T cd01870 46 -------------GKQVELALWDTAGQEDYDR-------LRP-LSYPDTDVILMCFSIDSPDSLENIP---EKWTPEVKH 101 (175)
T ss_pred -------------CEEEEEEEEeCCCchhhhh-------ccc-cccCCCCEEEEEEECCCHHHHHHHH---HHHHHHHHh
Confidence 1335789999999866421 100 1113468888888876432111110 111122222
Q ss_pred --ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 230 --TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 230 --~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
.++|+++|+||+|+......... +..... .......+..+...+...+++++||++|.|+++++.+
T Consensus 102 ~~~~~piilv~nK~Dl~~~~~~~~~---i~~~~~---------~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 169 (175)
T cd01870 102 FCPNVPIILVGNKKDLRNDEHTRRE---LAKMKQ---------EPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEM 169 (175)
T ss_pred hCCCCCEEEEeeChhcccChhhhhh---hhhccC---------CCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHH
Confidence 47899999999998754321111 110000 0000111111122233457999999999999999999
Q ss_pred HHHHH
Q 014354 308 VEESA 312 (426)
Q Consensus 308 l~~~~ 312 (426)
|.+.+
T Consensus 170 l~~~~ 174 (175)
T cd01870 170 ATRAA 174 (175)
T ss_pred HHHHh
Confidence 98654
No 133
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.66 E-value=9.9e-16 Score=137.18 Aligned_cols=114 Identities=16% Similarity=0.163 Sum_probs=67.6
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH-HHHHHhhccCCeEEEEecCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~-~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
..+.+|||||+.++. .+.+... ..++.+++|+|......-... ..... +.......++|+|+|+||+|+.
T Consensus 49 ~~~~i~Dt~G~~~~~-------~~~~~~~-~~~~~~vlv~~~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 49 CDLEILDTAGTEQFT-------AMRELYI-KSGQGFLLVYSVTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred EEEEEEeCCCcccch-------hhhHHHH-hhCCEEEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 577899999997752 1222211 235788888888653221111 11111 1111223479999999999987
Q ss_pred ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA 312 (426)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~ 312 (426)
...... ......+. ..+...+++++||++|.|+.++++++...+
T Consensus 120 ~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 120 DDRQVS--REDGVSLS----------------------QQWGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred ccCccC--HHHHHHHH----------------------HHcCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 543211 01111110 113346799999999999999999998754
No 134
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.66 E-value=1.2e-15 Score=136.43 Aligned_cols=163 Identities=16% Similarity=0.197 Sum_probs=94.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..+|+++|++|||||||++++++..+..... |... .++.. + .+..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~-------~t~~-~~~~~----~------------------~~~~----- 47 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFI-------STIG-IDFKI----R------------------TIEL----- 47 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccc-------cCcc-ceEEE----E------------------EEEE-----
Confidence 4689999999999999999999876543111 0000 00000 0 0000
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~ 228 (426)
. .....+.||||||+..+. ......+ ..+|++|+|+|+....+-.. ....+.......
T Consensus 48 ~-------------~~~~~l~l~D~~g~~~~~------~~~~~~~--~~ad~~i~v~d~~~~~s~~~-~~~~~~~i~~~~ 105 (167)
T cd01867 48 D-------------GKKIKLQIWDTAGQERFR------TITTAYY--RGAMGIILVYDITDEKSFEN-IRNWMRNIEEHA 105 (167)
T ss_pred C-------------CEEEEEEEEeCCchHHHH------HHHHHHh--CCCCEEEEEEECcCHHHHHh-HHHHHHHHHHhC
Confidence 0 122578899999986641 1111112 35799999999865332111 111111111112
Q ss_pred hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l 308 (426)
..+.|+++|+||+|+....... .+....+. .. ...+++++||++|.|+.+++.++
T Consensus 106 ~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 106 SEDVERMLVGNKCDMEEKRVVS--KEEGEALA----------------------DE-YGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred CCCCcEEEEEECcccccccCCC--HHHHHHHH----------------------HH-cCCEEEEEeCCCCCCHHHHHHHH
Confidence 3468999999999998543110 11111110 01 12468999999999999999999
Q ss_pred HHHHH
Q 014354 309 EESAQ 313 (426)
Q Consensus 309 ~~~~~ 313 (426)
.+.+.
T Consensus 161 ~~~~~ 165 (167)
T cd01867 161 AKDIK 165 (167)
T ss_pred HHHHH
Confidence 87653
No 135
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.66 E-value=9.9e-16 Score=140.37 Aligned_cols=115 Identities=11% Similarity=0.089 Sum_probs=67.8
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh---hccCCeEEEEecCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKTD 242 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~---~~~~P~IlVlNKiD 242 (426)
..+.||||||+.++. .+...+ ...+|++|+|+|.....+... ....+..+.... ..++|+|||+||+|
T Consensus 47 ~~l~i~Dt~G~~~~~-------~~~~~~-~~~ad~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~~piilvgNK~D 117 (190)
T cd04144 47 CMLEVLDTAGQEEYT-------ALRDQW-IREGEGFILVYSITSRSTFER-VERFREQIQRVKDESAADVPIMIVGNKCD 117 (190)
T ss_pred EEEEEEECCCchhhH-------HHHHHH-HHhCCEEEEEEECCCHHHHHH-HHHHHHHHHHHhcccCCCCCEEEEEEChh
Confidence 468899999987652 111111 123689999999865432211 111111111111 14689999999999
Q ss_pred CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
+........ .....+. ..+ ..+++++||++|.|+.+++.++.+.+..
T Consensus 118 l~~~~~v~~--~~~~~~~----------------------~~~-~~~~~e~SAk~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 118 KVYEREVST--EEGAALA----------------------RRL-GCEFIEASAKTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred ccccCccCH--HHHHHHH----------------------HHh-CCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 865332110 0011110 112 2579999999999999999999876654
No 136
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.66 E-value=1.5e-15 Score=156.32 Aligned_cols=161 Identities=23% Similarity=0.309 Sum_probs=101.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
.+.+.+|+|+|+||||||||+|+|++..... ++.+|++| ++.+ .+.+.
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~ai------------vs~~pgtT----rd~~--------------~~~i~-- 247 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAI------------VSDIKGTT----RDVV--------------EGDFE-- 247 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcc------------cCCCCCcE----EEEE--------------EEEEE--
Confidence 3466789999999999999999999875432 45556554 2211 00011
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHH-HHHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI-ITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~-l~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~ 223 (426)
..+..+.||||||+.+.. ...... +.... ....+|++++|+|++...+.... +
T Consensus 248 -----------------~~g~~v~l~DTaG~~~~~--~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~------~ 302 (442)
T TIGR00450 248 -----------------LNGILIKLLDTAGIREHA--DFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF------L 302 (442)
T ss_pred -----------------ECCEEEEEeeCCCcccch--hHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH------H
Confidence 134578999999997642 111111 11111 11358999999999876544332 2
Q ss_pred HHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 224 ~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
+..+...++|+|+|+||+|+.... .. .+. . ....+++.+||++ .||.+
T Consensus 303 l~~~~~~~~piIlV~NK~Dl~~~~-~~----~~~---~-----------------------~~~~~~~~vSak~-~gI~~ 350 (442)
T TIGR00450 303 IIDLNKSKKPFILVLNKIDLKINS-LE----FFV---S-----------------------SKVLNSSNLSAKQ-LKIKA 350 (442)
T ss_pred HHHHhhCCCCEEEEEECccCCCcc-hh----hhh---h-----------------------hcCCceEEEEEec-CCHHH
Confidence 223344578999999999997541 11 110 0 1124688999998 69999
Q ss_pred HHHHHHHHHHHH
Q 014354 304 YFKAVEESAQEF 315 (426)
Q Consensus 304 l~~~l~~~~~~~ 315 (426)
+++.|.+.+...
T Consensus 351 ~~~~L~~~i~~~ 362 (442)
T TIGR00450 351 LVDLLTQKINAF 362 (442)
T ss_pred HHHHHHHHHHHH
Confidence 998888876553
No 137
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.66 E-value=8.9e-16 Score=135.97 Aligned_cols=111 Identities=20% Similarity=0.176 Sum_probs=66.7
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH-HHHhhccCCeEEEEecCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC-SILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~-~~l~~~~~P~IlVlNKiDl~ 244 (426)
.++.||||||+..+. .+...+ ...+|++++|+|.....+..... ..+..+ ......+.|+++|+||+|+.
T Consensus 49 ~~~~l~D~~g~~~~~-------~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 49 VKLAIWDTAGQERFR-------TLTSSY-YRGAQGVILVYDVTRRDTFTNLE-TWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred EEEEEEECCCchhhh-------hhhHHH-hCCCCEEEEEEECCCHHHHHhHH-HHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 578999999986541 111111 13579999999986533221111 011111 11224578999999999998
Q ss_pred ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (426)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~ 311 (426)
......+. ...+.. ....+++++||++|.|+.++++.+.+.
T Consensus 120 ~~~~~~~~---~~~~~~-----------------------~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 120 NREVTREE---GLKFAR-----------------------KHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ccccCHHH---HHHHHH-----------------------HcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 43211111 111110 123579999999999999999988764
No 138
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.66 E-value=1.2e-15 Score=139.07 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=68.4
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh---hccCCeEEEEec
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNK 240 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~---~~~~P~IlVlNK 240 (426)
.+..+.||||||+..+ ..+...+- ..+|++|+|+|++...+-... ...+...+. ..+.|++||+||
T Consensus 59 ~~~~~~i~D~~Gq~~~-------~~~~~~~~-~~a~~iI~V~D~s~~~s~~~~---~~~l~~~l~~~~~~~~piilv~NK 127 (181)
T PLN00223 59 KNISFTVWDVGGQDKI-------RPLWRHYF-QNTQGLIFVVDSNDRDRVVEA---RDELHRMLNEDELRDAVLLVFANK 127 (181)
T ss_pred CCEEEEEEECCCCHHH-------HHHHHHHh-ccCCEEEEEEeCCcHHHHHHH---HHHHHHHhcCHhhCCCCEEEEEEC
Confidence 3467899999998654 11222111 347999999999754322111 111112221 136899999999
Q ss_pred CCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (426)
Q Consensus 241 iDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~gv~~l~~~l~~~~~ 313 (426)
+|+.......++...+. . ... .....++++||++|+||.+++++|.+.+.
T Consensus 128 ~Dl~~~~~~~~~~~~l~---------------------l--~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 128 QDLPNAMNAAEITDKLG---------------------L--HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred CCCCCCCCHHHHHHHhC---------------------c--cccCCCceEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 99876532222221111 0 000 01123678999999999999999987654
No 139
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.66 E-value=1.9e-15 Score=143.57 Aligned_cols=135 Identities=21% Similarity=0.316 Sum_probs=81.1
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl 243 (426)
++.++.||||||+.++. ..+...+ ..+|.+++|+|+..+...+. ..++..+...++|.++|+||+|+
T Consensus 62 ~~~~i~liDTPG~~~f~------~~~~~~l--~~aD~~IlVvd~~~g~~~~~-----~~~~~~~~~~~~P~iivvNK~D~ 128 (237)
T cd04168 62 EDTKVNLIDTPGHMDFI------AEVERSL--SVLDGAILVISAVEGVQAQT-----RILWRLLRKLNIPTIIFVNKIDR 128 (237)
T ss_pred CCEEEEEEeCCCccchH------HHHHHHH--HHhCeEEEEEeCCCCCCHHH-----HHHHHHHHHcCCCEEEEEECccc
Confidence 56789999999998752 1222222 33699999999998775433 23445556678999999999999
Q ss_pred CChHhHHHHHHHHHHHHH---------------------------Hhcc-cc----ch-------hhhHHHHhhhhHhhh
Q 014354 244 AQHEFALEWMQDFEVFQA---------------------------AISS-DH----SY-------TSTLTNSLSLALDEF 284 (426)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~---------------------------~~~~-~~----~~-------~~~~~~~~~~~l~~~ 284 (426)
..... .+....++.... .+.. +. .| ...+...+...+..
T Consensus 129 ~~a~~-~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~- 206 (237)
T cd04168 129 AGADL-EKVYQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAK- 206 (237)
T ss_pred cCCCH-HHHHHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHh-
Confidence 86321 122222221111 0000 00 00 11112222221111
Q ss_pred hcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354 285 YKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (426)
Q Consensus 285 ~~~~~vv~vSA~~g~gv~~l~~~l~~~~~ 313 (426)
....|++.-||.++.|+..|++.|...+|
T Consensus 207 ~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 207 RKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred CCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 23467888899999999999999998876
No 140
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.66 E-value=5.8e-16 Score=135.48 Aligned_cols=154 Identities=18% Similarity=0.229 Sum_probs=90.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccccc
Q 014354 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTK 151 (426)
Q Consensus 72 v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~ 151 (426)
|+|+|++|||||||+|+|.+..+.... .| +..+.. ..+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~-------------~~-t~~~~~-------------------~~~~-------- 40 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDT-------------IP-TVGFNM-------------------RKVT-------- 40 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCc-------------cC-CCCcce-------------------EEEE--------
Confidence 799999999999999999988643211 11 110000 0000
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH---h
Q 014354 152 FDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL---Y 228 (426)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l---~ 228 (426)
.+...+.+|||||+..+. ......+ ..++++++|+|+..... +..........+ .
T Consensus 41 -----------~~~~~~~~~D~~g~~~~~------~~~~~~~--~~~d~ii~v~d~~~~~~---~~~~~~~~~~~~~~~~ 98 (159)
T cd04159 41 -----------KGNVTLKVWDLGGQPRFR------SMWERYC--RGVNAIVYVVDAADRTA---LEAAKNELHDLLEKPS 98 (159)
T ss_pred -----------ECCEEEEEEECCCCHhHH------HHHHHHH--hcCCEEEEEEECCCHHH---HHHHHHHHHHHHcChh
Confidence 123578999999986641 1111222 34799999999865321 111111111111 1
Q ss_pred hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l 308 (426)
..++|+++|+||+|+........+...+. +. . ......+++++||++|.|+.+++++|
T Consensus 99 ~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-~~------------------~---~~~~~~~~~~~Sa~~~~gi~~l~~~l 156 (159)
T cd04159 99 LEGIPLLVLGNKNDLPGALSVDELIEQMN-LK------------------S---ITDREVSCYSISCKEKTNIDIVLDWL 156 (159)
T ss_pred hcCCCEEEEEeCccccCCcCHHHHHHHhC-cc------------------c---ccCCceEEEEEEeccCCChHHHHHHH
Confidence 24789999999999876543222211110 00 0 01123568999999999999999998
Q ss_pred HH
Q 014354 309 EE 310 (426)
Q Consensus 309 ~~ 310 (426)
.+
T Consensus 157 ~~ 158 (159)
T cd04159 157 IK 158 (159)
T ss_pred hh
Confidence 64
No 141
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.66 E-value=1.8e-15 Score=135.18 Aligned_cols=161 Identities=17% Similarity=0.238 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|+++|++|||||||++++.+..+... .+.+...+.. ..... +
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~--------------~~~t~~~~~~------------------~~~~~---~- 46 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMAD--------------CPHTIGVEFG------------------TRIIE---V- 46 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCcccceeEE------------------EEEEE---E-
Confidence 5799999999999999999998754321 1111100000 00000 0
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~ 229 (426)
......+.||||||+..+. ......+ ..++++|+|+|.....+-.. ....+........
T Consensus 47 ------------~~~~~~l~i~Dt~G~~~~~------~~~~~~~--~~~~~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~ 105 (166)
T cd04122 47 ------------NGQKIKLQIWDTAGQERFR------AVTRSYY--RGAAGALMVYDITRRSTYNH-LSSWLTDARNLTN 105 (166)
T ss_pred ------------CCEEEEEEEEECCCcHHHH------HHHHHHh--cCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCC
Confidence 0123578999999986641 1111122 34799999999875322111 1111111111223
Q ss_pred ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354 230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE 309 (426)
Q Consensus 230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~ 309 (426)
.+.|++||+||+|+....... .+....+. . ....+++++||++|.|+.+++..+.
T Consensus 106 ~~~~iiiv~nK~Dl~~~~~~~--~~~~~~~~----------------------~-~~~~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 106 PNTVIFLIGNKADLEAQRDVT--YEEAKQFA----------------------D-ENGLLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred CCCeEEEEEECcccccccCcC--HHHHHHHH----------------------H-HcCCEEEEEECCCCCCHHHHHHHHH
Confidence 468999999999997653211 01111110 0 1235799999999999999998887
Q ss_pred HHH
Q 014354 310 ESA 312 (426)
Q Consensus 310 ~~~ 312 (426)
..+
T Consensus 161 ~~~ 163 (166)
T cd04122 161 KKI 163 (166)
T ss_pred HHH
Confidence 655
No 142
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.65 E-value=8.9e-16 Score=135.84 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=91.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+++|++|||||||++++++....... .|..+ .+. . ...+.. .
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~-------------~~~~~-~~~---~--------------~~~~~~----~- 45 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQY-------------QATIG-IDF---L--------------SKTMYL----E- 45 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccC-------------CCcee-eeE---E--------------EEEEEE----C-
Confidence 6899999999999999999987654311 11110 000 0 000000 0
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH-hh
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL-YK 229 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l-~~ 229 (426)
....++.+|||||+..+. .+...+ ...++++++|+|.....+... . ..++..+ ..
T Consensus 46 ------------~~~~~l~~~D~~G~~~~~-------~~~~~~-~~~~~~ii~v~d~~~~~s~~~-~---~~~~~~~~~~ 101 (161)
T cd01861 46 ------------DKTVRLQLWDTAGQERFR-------SLIPSY-IRDSSVAVVVYDITNRQSFDN-T---DKWIDDVRDE 101 (161)
T ss_pred ------------CEEEEEEEEECCCcHHHH-------HHHHHH-hccCCEEEEEEECcCHHHHHH-H---HHHHHHHHHh
Confidence 122468999999986541 111111 134789999999865332211 1 1111212 22
Q ss_pred c--cCCeEEEEecCCCCChHhH-HHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 230 T--RLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 230 ~--~~P~IlVlNKiDl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
. +.|+++|+||+|+...... ......+. . ..+.+++++||++|.|++++++
T Consensus 102 ~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~-------------------------~-~~~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 102 RGNDVIIVLVGNKTDLSDKRQVSTEEGEKKA-------------------------K-ELNAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred CCCCCEEEEEEEChhccccCccCHHHHHHHH-------------------------H-HhCCEEEEEeCCCCCCHHHHHH
Confidence 2 5899999999999643211 11111110 1 1236799999999999999999
Q ss_pred HHHHH
Q 014354 307 AVEES 311 (426)
Q Consensus 307 ~l~~~ 311 (426)
+|.+.
T Consensus 156 ~i~~~ 160 (161)
T cd01861 156 KIASA 160 (161)
T ss_pred HHHHh
Confidence 99764
No 143
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.65 E-value=1.5e-15 Score=135.22 Aligned_cols=158 Identities=20% Similarity=0.281 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|+++|.+|||||||++++++..+..... |.. +..+... .+...
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-------~t~-----~~~~~~~------------------~~~~~----- 48 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSK-------STI-----GVEFATR------------------SIQID----- 48 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC-------Ccc-----ceEEEEE------------------EEEEC-----
Confidence 579999999999999999999876432110 100 0000000 00000
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY- 228 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~- 228 (426)
.....+.||||||+..+. .+...+ -..++++|+|+|+....+ +. ....++..+.
T Consensus 49 -------------~~~~~~~l~D~~g~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~s---~~-~~~~~~~~~~~ 103 (165)
T cd01868 49 -------------GKTIKAQIWDTAGQERYR-------AITSAY-YRGAVGALLVYDITKKQT---FE-NVERWLKELRD 103 (165)
T ss_pred -------------CEEEEEEEEeCCChHHHH-------HHHHHH-HCCCCEEEEEEECcCHHH---HH-HHHHHHHHHHH
Confidence 122578899999986641 122211 134689999999874222 21 1112222222
Q ss_pred --hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 229 --KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 229 --~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
..++|+++|+||+|+...... ..+....+.. . ...+++++||++|.|+.++++
T Consensus 104 ~~~~~~pi~vv~nK~Dl~~~~~~--~~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~v~~l~~ 158 (165)
T cd01868 104 HADSNIVIMLVGNKSDLRHLRAV--PTEEAKAFAE---------------------K--NGLSFIETSALDGTNVEEAFK 158 (165)
T ss_pred hCCCCCeEEEEEECccccccccC--CHHHHHHHHH---------------------H--cCCEEEEEECCCCCCHHHHHH
Confidence 235899999999998754321 0111111110 1 235799999999999999999
Q ss_pred HHHHHH
Q 014354 307 AVEESA 312 (426)
Q Consensus 307 ~l~~~~ 312 (426)
+|...+
T Consensus 159 ~l~~~i 164 (165)
T cd01868 159 QLLTEI 164 (165)
T ss_pred HHHHHh
Confidence 987654
No 144
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.65 E-value=1.2e-15 Score=138.05 Aligned_cols=168 Identities=17% Similarity=0.185 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|+++|.+|||||||+.+++...+..... |.+.. .+...+. +.
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~-------~t~~~-~~~~~~~----------------------~~------ 45 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYI-------PTVFD-NYSANVM----------------------VD------ 45 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCC-------Cccee-eeEEEEE----------------------EC------
Confidence 479999999999999999999865433211 11100 0000000 00
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY- 228 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~- 228 (426)
.....+.||||||+..+. .+...+ -..+|++|+|+|..+.. .|......+...+.
T Consensus 46 -------------~~~~~l~i~Dt~G~~~~~-------~~~~~~-~~~~d~~ilv~d~~~~~---sf~~~~~~~~~~~~~ 101 (174)
T cd01871 46 -------------GKPVNLGLWDTAGQEDYD-------RLRPLS-YPQTDVFLICFSLVSPA---SFENVRAKWYPEVRH 101 (174)
T ss_pred -------------CEEEEEEEEECCCchhhh-------hhhhhh-cCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHH
Confidence 123678999999987652 121111 13579999999997532 22211111111121
Q ss_pred -hccCCeEEEEecCCCCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 229 -KTRLPLVLAFNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 229 -~~~~P~IlVlNKiDl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
..++|+|||.||+|+..... ...+.... ...+....+..+...++..+++++||++|.|++++|+
T Consensus 102 ~~~~~piilvgnK~Dl~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 168 (174)
T cd01871 102 HCPNTPIILVGTKLDLRDDKDTIEKLKEKK-------------LTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFD 168 (174)
T ss_pred hCCCCCEEEEeeChhhccChhhHHHHhhcc-------------CCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHH
Confidence 23689999999999965321 11111000 0011111122222223345799999999999999999
Q ss_pred HHHH
Q 014354 307 AVEE 310 (426)
Q Consensus 307 ~l~~ 310 (426)
.+.+
T Consensus 169 ~l~~ 172 (174)
T cd01871 169 EAIR 172 (174)
T ss_pred HHHH
Confidence 8875
No 145
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.65 E-value=1.7e-15 Score=138.14 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=68.5
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh---ccCCeEEEEecC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK---TRLPLVLAFNKT 241 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~---~~~P~IlVlNKi 241 (426)
+..+.||||||+..+. .+...+ -..+|++|+|+|++... .+......+...+.. ...|++||+||+
T Consensus 60 ~~~~~l~D~~G~~~~~-------~~~~~~-~~~ad~iI~v~D~t~~~---s~~~~~~~l~~~~~~~~~~~~piilv~NK~ 128 (182)
T PTZ00133 60 NLKFTMWDVGGQDKLR-------PLWRHY-YQNTNGLIFVVDSNDRE---RIGDAREELERMLSEDELRDAVLLVFANKQ 128 (182)
T ss_pred CEEEEEEECCCCHhHH-------HHHHHH-hcCCCEEEEEEeCCCHH---HHHHHHHHHHHHHhCHhhcCCCEEEEEeCC
Confidence 4688999999996541 122211 13479999999986432 121111122222221 368999999999
Q ss_pred CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
|+.......++...+. ... .......++++||++|.|+.+++++|.+.+..
T Consensus 129 Dl~~~~~~~~i~~~l~---------------------~~~-~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 129 DLPNAMSTTEVTEKLG---------------------LHS-VRQRNWYIQGCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred CCCCCCCHHHHHHHhC---------------------CCc-ccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHH
Confidence 9865322111211111 000 00112347789999999999999999876544
No 146
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.65 E-value=1e-15 Score=135.74 Aligned_cols=112 Identities=19% Similarity=0.207 Sum_probs=68.8
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~ 245 (426)
..+.||||||+..+. .+...+ ...+|++++|+|+....+... ....+.....+...++|+++|+||+|+..
T Consensus 49 ~~l~l~D~~G~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 49 VKLQIWDTAGQERFR-------SVTRSY-YRGAAGALLVYDITNRTSFEA-LPTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred EEEEEEECcchHHHH-------HhHHHH-hcCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 578899999986642 111111 134799999999976443221 11112222223345789999999999976
Q ss_pred hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354 246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (426)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~ 311 (426)
..... ......+. ..+ ..+++.+||++|.|+.++++++.+.
T Consensus 120 ~~~~~--~~~~~~~~----------------------~~~-~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 120 QREVT--FLEASRFA----------------------QEN-GLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred hccCC--HHHHHHHH----------------------HHc-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 43210 01111110 011 2679999999999999999998764
No 147
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.65 E-value=7.6e-15 Score=135.55 Aligned_cols=125 Identities=10% Similarity=-0.044 Sum_probs=73.6
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~ 245 (426)
.++.+|||||+.+... ......+.+....+|++++|.+. .++..+ ...+..+...+.|+++|+||+|+..
T Consensus 52 ~~l~l~DtpG~~~~~~---~~~~~l~~~~~~~~d~~l~v~~~--~~~~~d-----~~~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 52 PNVTLWDLPGIGSTAF---PPDDYLEEMKFSEYDFFIIISST--RFSSND-----VKLAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CCceEEeCCCCCcccC---CHHHHHHHhCccCcCEEEEEeCC--CCCHHH-----HHHHHHHHHhCCCEEEEEecccchh
Confidence 5789999999976421 11122222222346888887553 233322 2334445566899999999999975
Q ss_pred hHhH---------HHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecc--cCCCHHHHHHHHHHHHHH
Q 014354 246 HEFA---------LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV--SGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 246 ~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~--~g~gv~~l~~~l~~~~~~ 314 (426)
+... .+.++.+.. . +...+.. ......+++.+|+. .+.|+..|.+.+...+++
T Consensus 122 ~~~~~~~~~~~~~~~~l~~i~~---~----------~~~~~~~---~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 122 SNEQRSKPRSFNREQVLQEIRD---N----------CLENLQE---AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred hhhhccccccccHHHHHHHHHH---H----------HHHHHHH---cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 4321 112222211 1 0011110 11234589999998 689999999999999987
Q ss_pred HH
Q 014354 315 FM 316 (426)
Q Consensus 315 ~~ 316 (426)
..
T Consensus 186 ~~ 187 (197)
T cd04104 186 HK 187 (197)
T ss_pred HH
Confidence 43
No 148
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.65 E-value=3.5e-15 Score=134.83 Aligned_cols=111 Identities=19% Similarity=0.194 Sum_probs=68.0
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh----hccCCeEEEEecC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY----KTRLPLVLAFNKT 241 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~----~~~~P~IlVlNKi 241 (426)
..+.||||||+.++. .+...+ -..++++|+|+|+.... .|..- ..++..+. ..+.|+++|+||+
T Consensus 63 ~~~~i~Dt~G~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~---s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~ 130 (180)
T cd04127 63 IHLQLWDTAGQERFR-------SLTTAF-FRDAMGFLLIFDLTNEQ---SFLNV-RNWMSQLQTHAYCENPDIVLCGNKA 130 (180)
T ss_pred EEEEEEeCCChHHHH-------HHHHHH-hCCCCEEEEEEECCCHH---HHHHH-HHHHHHHHHhcCCCCCcEEEEEeCc
Confidence 678999999986641 122211 13579999999986532 22111 11222222 2368999999999
Q ss_pred CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354 242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (426)
Q Consensus 242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~ 313 (426)
|+....... ......+. ..+ ..+++++||++|.|+.+++++|.+.+.
T Consensus 131 Dl~~~~~v~--~~~~~~~~----------------------~~~-~~~~~e~Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 131 DLEDQRQVS--EEQAKALA----------------------DKY-GIPYFETSAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred cchhcCccC--HHHHHHHH----------------------HHc-CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 997543211 01111111 111 257999999999999999999987654
No 149
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.65 E-value=1.6e-15 Score=141.85 Aligned_cols=163 Identities=17% Similarity=0.172 Sum_probs=92.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+|+|.+|||||||+++|++..+..... | +..++.... .+.. .+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~-------~-------T~~~d~~~~----------------~i~~-----~~ 46 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYK-------Q-------TIGLDFFSK----------------RVTL-----PG 46 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCC-------C-------ceeEEEEEE----------------EEEe-----CC
Confidence 68999999999999999999876543211 1 111110000 0000 00
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-- 228 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-- 228 (426)
.....+.||||||+..+. .+...+ ...+|++|+|+|.+...+... ....+..+....
T Consensus 47 ------------~~~~~~~i~Dt~G~~~~~-------~l~~~~-~~~ad~iilV~D~t~~~s~~~-~~~w~~~l~~~~~~ 105 (215)
T cd04109 47 ------------NLNVTLQVWDIGGQSIGG-------KMLDKY-IYGAHAVFLVYDVTNSQSFEN-LEDWYSMVRKVLKS 105 (215)
T ss_pred ------------CCEEEEEEEECCCcHHHH-------HHHHHH-hhcCCEEEEEEECCCHHHHHH-HHHHHHHHHHhccc
Confidence 123578999999986541 222222 135799999999865322111 111111111111
Q ss_pred -hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 229 -KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 229 -~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
....|+|+|+||+|+....... ......+. ..+ ..+++.+||++|.|+.++|++
T Consensus 106 ~~~~~piilVgNK~DL~~~~~v~--~~~~~~~~----------------------~~~-~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 106 SETQPLVVLVGNKTDLEHNRTVK--DDKHARFA----------------------QAN-GMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred cCCCceEEEEEECcccccccccC--HHHHHHHH----------------------HHc-CCEEEEEECCCCCCHHHHHHH
Confidence 1246789999999997533211 01111111 111 256899999999999999999
Q ss_pred HHHHHHH
Q 014354 308 VEESAQE 314 (426)
Q Consensus 308 l~~~~~~ 314 (426)
|...+..
T Consensus 161 l~~~l~~ 167 (215)
T cd04109 161 LAAELLG 167 (215)
T ss_pred HHHHHHh
Confidence 9877654
No 150
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.65 E-value=4.8e-15 Score=143.01 Aligned_cols=180 Identities=15% Similarity=0.173 Sum_probs=111.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcC----CCCCCCc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFN----LGPNGGI 141 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~----l~~ng~i 141 (426)
.++..+|.|+|+|||||||||+++++..... ..++++..|.+.. .| ..+ +...+ ...+||+
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t~-------~D---a~r----I~~~g~pvvqi~tG~~ 165 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTV-------ND---AAR----IRATGTPAIQVNTGKG 165 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCcH-------HH---HHH----HHhcCCcEEEecCCCC
Confidence 4567899999999999999999999986544 3455555443211 11 111 12222 2246888
Q ss_pred ccccccccccHHHHHHHHHHHhcCCCEEEEcCCCc-ccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhH
Q 014354 142 LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNM 220 (426)
Q Consensus 142 ~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi-~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~ 220 (426)
||. ....+...+..+. ..+.+++||++.|. ..+.. ..++. ..-+.|++..++.+...
T Consensus 166 Chl---~a~mv~~Al~~L~--~~~~d~liIEnvGnLvcPa~-fdlge-----------~~~v~vlsV~eg~dkpl----- 223 (290)
T PRK10463 166 CHL---DAQMIADAAPRLP--LDDNGILFIENVGNLVCPAS-FDLGE-----------KHKVAVLSVTEGEDKPL----- 223 (290)
T ss_pred CcC---cHHHHHHHHHHHh--hcCCcEEEEECCCCccCCCc-cchhh-----------ceeEEEEECccccccch-----
Confidence 874 2333333333332 35579999999996 34321 01111 23457777776643211
Q ss_pred HHHHHHHhhccCCeEEEEecCCCCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccC
Q 014354 221 LYACSILYKTRLPLVLAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG 298 (426)
Q Consensus 221 l~~~~~l~~~~~P~IlVlNKiDl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g 298 (426)
..-.+...+.++|+||+|++.. ..+....+.++ ...++.++|++||++|
T Consensus 224 ----Kyp~~f~~ADIVVLNKiDLl~~~~~dle~~~~~lr-------------------------~lnp~a~I~~vSA~tG 274 (290)
T PRK10463 224 ----KYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAR-------------------------EVNPEIEIILISATSG 274 (290)
T ss_pred ----hccchhhcCcEEEEEhHHcCcccHHHHHHHHHHHH-------------------------hhCCCCcEEEEECCCC
Confidence 1112347889999999999863 22333333332 2346788999999999
Q ss_pred CCHHHHHHHHHHH
Q 014354 299 AGIEAYFKAVEES 311 (426)
Q Consensus 299 ~gv~~l~~~l~~~ 311 (426)
+|++++++||...
T Consensus 275 eGld~L~~~L~~~ 287 (290)
T PRK10463 275 EGMDQWLNWLETQ 287 (290)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999763
No 151
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.65 E-value=1.8e-15 Score=138.09 Aligned_cols=169 Identities=19% Similarity=0.197 Sum_probs=92.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|++|||||||+++|.+..... . .|... ++.+.+.
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~-~-------~~T~~--------------------------~~~~~i~---- 59 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ-H-------VPTLH--------------------------PTSEELT---- 59 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcc-c-------CCccC--------------------------cceEEEE----
Confidence 45778999999999999999999865321 0 01000 0000011
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
..+..+.+|||||+..+. .+...+ ...++.+++|+|+.... .+......+...+
T Consensus 60 ---------------~~~~~~~l~D~~G~~~~~-------~~~~~~-~~~ad~iilV~D~~~~~---s~~~~~~~~~~i~ 113 (190)
T cd00879 60 ---------------IGNIKFKTFDLGGHEQAR-------RLWKDY-FPEVDGIVFLVDAADPE---RFQESKEELDSLL 113 (190)
T ss_pred ---------------ECCEEEEEEECCCCHHHH-------HHHHHH-hccCCEEEEEEECCcHH---HHHHHHHHHHHHH
Confidence 123578899999986541 111111 13468999999987532 1111111112222
Q ss_pred h---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 228 ~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
. ..+.|+++|+||+|+............+. ... ..........+......+++++||++|.|+.++
T Consensus 114 ~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~ 182 (190)
T cd00879 114 SDEELANVPFLILGNKIDLPGAVSEEELRQALG----LYG-------TTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEA 182 (190)
T ss_pred cCccccCCCEEEEEeCCCCCCCcCHHHHHHHhC----ccc-------ccccccccccccCceeEEEEEeEecCCCChHHH
Confidence 1 35689999999999875322212211111 000 000000000001112346899999999999999
Q ss_pred HHHHHHH
Q 014354 305 FKAVEES 311 (426)
Q Consensus 305 ~~~l~~~ 311 (426)
+++|...
T Consensus 183 ~~~l~~~ 189 (190)
T cd00879 183 FRWLSQY 189 (190)
T ss_pred HHHHHhh
Confidence 9999764
No 152
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.65 E-value=2.6e-15 Score=138.05 Aligned_cols=112 Identities=16% Similarity=0.148 Sum_probs=66.1
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl 243 (426)
++..+.||||||+.++. ......+ ..+|++++|+|+..+..... ..++..+...++|.++|+||+|+
T Consensus 63 ~~~~~~l~DtpG~~~~~------~~~~~~~--~~~d~~ilV~d~~~~~~~~~-----~~~~~~~~~~~~p~iiv~NK~Dl 129 (194)
T cd01891 63 KDTKINIVDTPGHADFG------GEVERVL--SMVDGVLLLVDASEGPMPQT-----RFVLKKALELGLKPIVVINKIDR 129 (194)
T ss_pred CCEEEEEEECCCcHHHH------HHHHHHH--HhcCEEEEEEECCCCccHHH-----HHHHHHHHHcCCCEEEEEECCCC
Confidence 45788999999997752 1122222 34699999999987653322 12233344568999999999999
Q ss_pred CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
..... ......+..+...+ .... . ....+++++||++|.|+.++.
T Consensus 130 ~~~~~-~~~~~~~~~~~~~~--------------~~~~-~-~~~~~iv~~Sa~~g~~~~~~~ 174 (194)
T cd01891 130 PDARP-EEVVDEVFDLFIEL--------------GATE-E-QLDFPVLYASAKNGWASLNLE 174 (194)
T ss_pred CCCCH-HHHHHHHHHHHHHh--------------CCcc-c-cCccCEEEeehhccccccccc
Confidence 75321 11222222111110 0000 0 013579999999998886553
No 153
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.64 E-value=3.1e-15 Score=144.69 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=51.6
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl 243 (426)
+++++.||||||+.++. ..+...+ ..+|++++|||+..+...++ ..++..+...++|.++++||+|+
T Consensus 62 ~~~~i~liDTPG~~df~------~~~~~~l--~~aD~ailVVDa~~g~~~~t-----~~~~~~~~~~~~p~ivviNK~D~ 128 (270)
T cd01886 62 KDHRINIIDTPGHVDFT------IEVERSL--RVLDGAVAVFDAVAGVEPQT-----ETVWRQADRYNVPRIAFVNKMDR 128 (270)
T ss_pred CCEEEEEEECCCcHHHH------HHHHHHH--HHcCEEEEEEECCCCCCHHH-----HHHHHHHHHcCCCEEEEEECCCC
Confidence 56899999999997652 1222222 34699999999999887654 23455566788999999999999
Q ss_pred CCh
Q 014354 244 AQH 246 (426)
Q Consensus 244 ~~~ 246 (426)
...
T Consensus 129 ~~a 131 (270)
T cd01886 129 TGA 131 (270)
T ss_pred CCC
Confidence 753
No 154
>PRK12736 elongation factor Tu; Reviewed
Probab=99.64 E-value=2.3e-15 Score=153.36 Aligned_cols=118 Identities=20% Similarity=0.264 Sum_probs=75.1
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC-eEEEEecCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTD 242 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P-~IlVlNKiD 242 (426)
++.++.||||||+.++. ..+... ...+|++++|||+..+...++ ...+..+...++| .|+|+||+|
T Consensus 73 ~~~~i~~iDtPGh~~f~------~~~~~~--~~~~d~~llVvd~~~g~~~~t-----~~~~~~~~~~g~~~~IvviNK~D 139 (394)
T PRK12736 73 EKRHYAHVDCPGHADYV------KNMITG--AAQMDGAILVVAATDGPMPQT-----REHILLARQVGVPYLVVFLNKVD 139 (394)
T ss_pred CCcEEEEEECCCHHHHH------HHHHHH--HhhCCEEEEEEECCCCCchhH-----HHHHHHHHHcCCCEEEEEEEecC
Confidence 44689999999986642 112111 245799999999998877665 3344556677899 568899999
Q ss_pred CCChHhHHH-HHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCC--------CHHHHHHHHHHHH
Q 014354 243 VAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGA--------GIEAYFKAVEESA 312 (426)
Q Consensus 243 l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~--------gv~~l~~~l~~~~ 312 (426)
++..+...+ +...+..+... . .| ..+.+++++||++|. ++..|+++|...+
T Consensus 140 ~~~~~~~~~~i~~~i~~~l~~--------------~-----~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 140 LVDDEELLELVEMEVRELLSE--------------Y-----DFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred CcchHHHHHHHHHHHHHHHHH--------------h-----CCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 986543322 22233322211 0 01 124789999999983 4666666666554
Q ss_pred H
Q 014354 313 Q 313 (426)
Q Consensus 313 ~ 313 (426)
+
T Consensus 201 p 201 (394)
T PRK12736 201 P 201 (394)
T ss_pred C
Confidence 4
No 155
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.64 E-value=3.1e-15 Score=137.39 Aligned_cols=173 Identities=16% Similarity=0.155 Sum_probs=97.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..+|+++|..|||||||+.+++...+.......+. . .+... +..
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~-------~-~~~~~-----------------------~~~----- 46 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVF-------D-NYSAQ-----------------------TAV----- 46 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceE-------e-eeEEE-----------------------EEE-----
Confidence 36899999999999999999998765432211110 0 00000 000
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~ 228 (426)
....+.+.||||||+.++. .+...+ -..++++|+|.|.....+ |..-...+...+.
T Consensus 47 -------------~~~~~~l~i~Dt~G~e~~~-------~l~~~~-~~~a~~~ilvydit~~~S---f~~~~~~w~~~i~ 102 (191)
T cd01875 47 -------------DGRTVSLNLWDTAGQEEYD-------RLRTLS-YPQTNVFIICFSIASPSS---YENVRHKWHPEVC 102 (191)
T ss_pred -------------CCEEEEEEEEECCCchhhh-------hhhhhh-ccCCCEEEEEEECCCHHH---HHHHHHHHHHHHH
Confidence 0233678999999997752 222221 134789999999865332 2111111111121
Q ss_pred --hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 229 --KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 229 --~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
..++|+|||.||+|+.......+. +..+. ........+..+.......+++++||++|.||.++|.
T Consensus 103 ~~~~~~piilvgNK~DL~~~~~~~~~---~~~~~---------~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~ 170 (191)
T cd01875 103 HHCPNVPILLVGTKKDLRNDADTLKK---LKEQG---------QAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFA 170 (191)
T ss_pred hhCCCCCEEEEEeChhhhcChhhHHH---Hhhcc---------CCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHH
Confidence 247899999999999654321111 11000 0000011111111222335799999999999999999
Q ss_pred HHHHHHH
Q 014354 307 AVEESAQ 313 (426)
Q Consensus 307 ~l~~~~~ 313 (426)
+|.+.+.
T Consensus 171 ~l~~~~~ 177 (191)
T cd01875 171 EAVRAVL 177 (191)
T ss_pred HHHHHHh
Confidence 9987663
No 156
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.64 E-value=1.9e-15 Score=134.20 Aligned_cols=111 Identities=21% Similarity=0.222 Sum_probs=68.0
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh--ccCCeEEEEecCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTD 242 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~--~~~P~IlVlNKiD 242 (426)
..++.+|||||+..+. .+.+.+ ...+|++++|+|.+...+... ...++..+.+ .+.|+|+|+||+|
T Consensus 51 ~~~l~i~Dt~G~~~~~-------~~~~~~-~~~~d~ii~v~d~~~~~s~~~----~~~~~~~~~~~~~~~p~ilv~nK~D 118 (164)
T cd04101 51 TVELFIFDSAGQELYS-------DMVSNY-WESPSVFILVYDVSNKASFEN----CSRWVNKVRTASKHMPGVLVGNKMD 118 (164)
T ss_pred EEEEEEEECCCHHHHH-------HHHHHH-hCCCCEEEEEEECcCHHHHHH----HHHHHHHHHHhCCCCCEEEEEECcc
Confidence 3688999999985541 122221 145799999999865322111 1122222222 3689999999999
Q ss_pred CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA 312 (426)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~ 312 (426)
+.......... ...+. ...+.+++++||++|.|+.+++..|.+.+
T Consensus 119 l~~~~~~~~~~--~~~~~-----------------------~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 119 LADKAEVTDAQ--AQAFA-----------------------QANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred cccccCCCHHH--HHHHH-----------------------HHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 97653211110 01000 01135689999999999999999987653
No 157
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=1.2e-14 Score=131.52 Aligned_cols=173 Identities=16% Similarity=0.136 Sum_probs=113.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
....+-|+++|.+|||||||+|+|+++..-. -++..|+.| ..+
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LA-----------rtSktPGrT--------------------------q~i 63 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLA-----------RTSKTPGRT--------------------------QLI 63 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCccee-----------ecCCCCCcc--------------------------cee
Confidence 4466789999999999999999999976211 155555554 111
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccc----hhchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT----WSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNM 220 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~----~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~ 220 (426)
++|. -+..+.|+|.||..=... ....+..+.+++.. .....++++||+.+.....+
T Consensus 64 Nff~--------------~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D----- 124 (200)
T COG0218 64 NFFE--------------VDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLD----- 124 (200)
T ss_pred EEEE--------------ecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHH-----
Confidence 1211 113488999999743211 11123445555543 33578999999999988766
Q ss_pred HHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC
Q 014354 221 LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300 (426)
Q Consensus 221 l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g 300 (426)
......+...++|+++|+||+|.++.....+....+.... .. .+.....++.+|+.++.|
T Consensus 125 ~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l-----------------~~---~~~~~~~~~~~ss~~k~G 184 (200)
T COG0218 125 REMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEEL-----------------KK---PPPDDQWVVLFSSLKKKG 184 (200)
T ss_pred HHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHh-----------------cC---CCCccceEEEEecccccC
Confidence 2445667889999999999999999765433333332100 00 011111288999999999
Q ss_pred HHHHHHHHHHHHHH
Q 014354 301 IEAYFKAVEESAQE 314 (426)
Q Consensus 301 v~~l~~~l~~~~~~ 314 (426)
++++...|.+.+.+
T Consensus 185 i~~l~~~i~~~~~~ 198 (200)
T COG0218 185 IDELKAKILEWLKE 198 (200)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999876543
No 158
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.64 E-value=2.5e-15 Score=133.24 Aligned_cols=158 Identities=15% Similarity=0.218 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|+++|++|||||||+|++++........ |..........+. . .
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------~t~~~~~~~~~v~-----------------------~-----~ 46 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQE-------STIGAAFLTQTVN-----------------------L-----D 46 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC-------CccceeEEEEEEE-----------------------E-----C
Confidence 479999999999999999999887543110 0000000000000 0 0
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY- 228 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~- 228 (426)
.....+.+|||||+.++. .....+ ...++++++|+|+.... .+... ..++..+.
T Consensus 47 -------------~~~~~~~i~D~~G~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~---s~~~~-~~~~~~~~~ 101 (163)
T cd01860 47 -------------DTTVKFEIWDTAGQERYR-------SLAPMY-YRGAAAAIVVYDITSEE---SFEKA-KSWVKELQR 101 (163)
T ss_pred -------------CEEEEEEEEeCCchHHHH-------HHHHHH-hccCCEEEEEEECcCHH---HHHHH-HHHHHHHHH
Confidence 123578899999986541 111111 13479999999997432 22111 11222222
Q ss_pred --hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 229 --KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 229 --~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
...+|+|+|+||+|+....... ......+.. . . ..+++++||++|.|+.++++
T Consensus 102 ~~~~~~~iivv~nK~D~~~~~~~~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd01860 102 NASPNIIIALVGNKADLESKRQVS--TEEAQEYAD---------------------E-N-GLLFFETSAKTGENVNELFT 156 (163)
T ss_pred hCCCCCeEEEEEECccccccCcCC--HHHHHHHHH---------------------H-c-CCEEEEEECCCCCCHHHHHH
Confidence 2468899999999987532110 001111100 1 1 25799999999999999999
Q ss_pred HHHHHH
Q 014354 307 AVEESA 312 (426)
Q Consensus 307 ~l~~~~ 312 (426)
+|.+.+
T Consensus 157 ~l~~~l 162 (163)
T cd01860 157 EIAKKL 162 (163)
T ss_pred HHHHHh
Confidence 998875
No 159
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.64 E-value=3.6e-15 Score=130.21 Aligned_cols=154 Identities=20% Similarity=0.261 Sum_probs=90.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+++|++|||||||++++.+....... .+ +...... .... ..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~-------------~~-t~~~~~~------------------~~~~-----~~ 44 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENY-------------KS-TIGVDFK------------------SKTI-----EI 44 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCcc-------------CC-ceeeeeE------------------EEEE-----EE
Confidence 6899999999999999999988755320 00 0000000 0000 00
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh-
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK- 229 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~- 229 (426)
......+.+||+||+..+. .+...+ ...+|++++|+|+...... ... ..+...+..
T Consensus 45 -----------~~~~~~~~l~D~~g~~~~~-------~~~~~~-~~~~d~ii~v~d~~~~~~~-~~~---~~~~~~~~~~ 101 (159)
T cd00154 45 -----------DGKTVKLQIWDTAGQERFR-------SITPSY-YRGAHGAILVYDITNRESF-ENL---DKWLKELKEY 101 (159)
T ss_pred -----------CCEEEEEEEEecCChHHHH-------HHHHHH-hcCCCEEEEEEECCCHHHH-HHH---HHHHHHHHHh
Confidence 0123678999999986541 111111 1347999999999762211 111 112222332
Q ss_pred --ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 230 --TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 230 --~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...|+++|+||+|+..+... ..+.+..+.. . ...+++.+||++|.|+.+++.+
T Consensus 102 ~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~---------------------~--~~~~~~~~sa~~~~~i~~~~~~ 156 (159)
T cd00154 102 APENIPIILVGNKIDLEDQRQV--STEEAQQFAK---------------------E--NGLLFFETSAKTGENVEELFQS 156 (159)
T ss_pred CCCCCcEEEEEEcccccccccc--cHHHHHHHHH---------------------H--cCCeEEEEecCCCCCHHHHHHH
Confidence 35999999999999732211 1111111110 1 2467999999999999999998
Q ss_pred HH
Q 014354 308 VE 309 (426)
Q Consensus 308 l~ 309 (426)
|.
T Consensus 157 i~ 158 (159)
T cd00154 157 LA 158 (159)
T ss_pred Hh
Confidence 75
No 160
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.64 E-value=1.9e-15 Score=143.30 Aligned_cols=89 Identities=21% Similarity=0.311 Sum_probs=55.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+|+|+||+|||||+|+|++.... +..+++++ . .+..|.+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-------------v~~~~~tT----~--------------~~~~g~~~------- 43 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-------------VAAYEFTT----L--------------TCVPGVLE------- 43 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-------------ccCCCCcc----c--------------cceEEEEE-------
Confidence 5899999999999999999987522 34445544 0 01112221
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCCCC
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSA 211 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~~~ 211 (426)
..+.++.+|||||+.+..... .....+...+ ..+|++++|+|++...
T Consensus 44 ------------~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~--~~ad~il~V~D~t~~~ 91 (233)
T cd01896 44 ------------YKGAKIQLLDLPGIIEGAADGKGRGRQVIAVA--RTADLILMVLDATKPE 91 (233)
T ss_pred ------------ECCeEEEEEECCCcccccccchhHHHHHHHhh--ccCCEEEEEecCCcch
Confidence 244689999999997653211 1122222222 4479999999987543
No 161
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.64 E-value=2.4e-15 Score=130.71 Aligned_cols=156 Identities=19% Similarity=0.242 Sum_probs=86.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|+++|++|||||||+++|++...... ..+..+ .+. . ...+.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~-------------~~~~~~-~~~---~--------------~~~~~------ 44 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITE-------------YKPGTT-RNY---V--------------TTVIE------ 44 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCc-------------CCCCce-eee---e--------------EEEEE------
Confidence 5799999999999999999998863221 111111 000 0 00000
Q ss_pred ccHHHHHHHHHHHhcC--CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCc-hhhhhhHHHHHHH
Q 014354 150 TKFDEVISLIERRADH--LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP-MTFMSNMLYACSI 226 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~--~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~-~~~~~~~l~~~~~ 226 (426)
..+ ..+.+|||||+.++.. ..... + ..++.+++++|....+.. ..........+..
T Consensus 45 -------------~~~~~~~~~~~D~~G~~~~~~---~~~~~---~--~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~ 103 (161)
T TIGR00231 45 -------------EDGKTYKFNLLDTAGQEDYRA---IRRLY---Y--RAVESSLRVFDIVILVLDVEEILEKQTKEIIH 103 (161)
T ss_pred -------------ECCEEEEEEEEECCCcccchH---HHHHH---H--hhhhEEEEEEEEeeeehhhhhHhHHHHHHHHH
Confidence 122 5788999999866521 11111 1 123445555555433111 1111011111111
Q ss_pred HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
....+.|+++|+||+|+............+. .....+++++||+.|.|+.++++
T Consensus 104 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~sa~~~~gv~~~~~ 157 (161)
T TIGR00231 104 HAESNVPIILVGNKIDLRDAKLKTHVAFLFA--------------------------KLNGEPIIPLSAETGKNIDSAFK 157 (161)
T ss_pred hcccCCcEEEEEEcccCCcchhhHHHHHHHh--------------------------hccCCceEEeecCCCCCHHHHHH
Confidence 2222889999999999987541111111111 12345699999999999999998
Q ss_pred HHH
Q 014354 307 AVE 309 (426)
Q Consensus 307 ~l~ 309 (426)
+|.
T Consensus 158 ~l~ 160 (161)
T TIGR00231 158 IVE 160 (161)
T ss_pred Hhh
Confidence 874
No 162
>CHL00071 tufA elongation factor Tu
Probab=99.63 E-value=4.5e-15 Score=151.98 Aligned_cols=169 Identities=18% Similarity=0.188 Sum_probs=96.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
++...|+++|++|+|||||+++|++............ ........ . ....|+.....
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~-----~~~~d~~~----~--------------e~~rg~T~~~~ 66 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKK-----YDEIDSAP----E--------------EKARGITINTA 66 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccc-----cccccCCh----h--------------hhcCCEeEEcc
Confidence 4557899999999999999999998643211100000 00000000 0 00122221100
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
. ..+ ..++.++.|+||||+.++. ..+...+ ..+|++++|||+..+...++ ...+..
T Consensus 67 ~--~~~---------~~~~~~~~~iDtPGh~~~~------~~~~~~~--~~~D~~ilVvda~~g~~~qt-----~~~~~~ 122 (409)
T CHL00071 67 H--VEY---------ETENRHYAHVDCPGHADYV------KNMITGA--AQMDGAILVVSAADGPMPQT-----KEHILL 122 (409)
T ss_pred E--EEE---------ccCCeEEEEEECCChHHHH------HHHHHHH--HhCCEEEEEEECCCCCcHHH-----HHHHHH
Confidence 0 000 0245689999999985431 2222222 45799999999998887655 334555
Q ss_pred HhhccCC-eEEEEecCCCCChHhHHH-HHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCCCH
Q 014354 227 LYKTRLP-LVLAFNKTDVAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGI 301 (426)
Q Consensus 227 l~~~~~P-~IlVlNKiDl~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~gv 301 (426)
+...++| +|+|+||+|++......+ +...+..+... . .+ ....+++++||++|.++
T Consensus 123 ~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~--------------~-----~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 123 AKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSK--------------Y-----DFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHH--------------h-----CCCCCcceEEEcchhhcccc
Confidence 6677899 668999999987553322 22233322211 0 01 11378999999999754
No 163
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.63 E-value=3.7e-15 Score=134.21 Aligned_cols=122 Identities=15% Similarity=0.132 Sum_probs=67.4
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDV 243 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKiDl 243 (426)
..+.||||||+.++... .. .....+|++|+|.|.....+ |......++..+. ..++|+++|+||+|+
T Consensus 48 ~~~~i~Dt~G~~~~~~~-------~~-~~~~~a~~~i~v~d~~~~~s---f~~~~~~~~~~~~~~~~~~piilv~nK~Dl 116 (173)
T cd04130 48 VRLQLCDTAGQDEFDKL-------RP-LCYPDTDVFLLCFSVVNPSS---FQNISEKWIPEIRKHNPKAPIILVGTQADL 116 (173)
T ss_pred EEEEEEECCCChhhccc-------cc-cccCCCcEEEEEEECCCHHH---HHHHHHHHHHHHHhhCCCCCEEEEeeChhh
Confidence 57889999999765211 11 11135799999999865332 2111111122222 246899999999998
Q ss_pred CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (426)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~ 310 (426)
....... ..+. .. . ...+....+..+....+..+++++||++|.|+.++++.+.-
T Consensus 117 ~~~~~~~---~~~~---~~---~---~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 117 RTDVNVL---IQLA---RY---G---EKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred ccChhHH---HHHh---hc---C---CCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 7543210 0000 00 0 00001111111112233347999999999999999988753
No 164
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.63 E-value=1.8e-15 Score=133.12 Aligned_cols=113 Identities=16% Similarity=0.121 Sum_probs=66.3
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~ 245 (426)
+.+.+||+||+.... ......+ ..++++++|+|............-...+.........|+++|+||+|+..
T Consensus 47 ~~~~l~D~~g~~~~~------~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 47 YTLDILDTAGQEEFS------AMRDLYI--RQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred EEEEEEECCChHHHH------HHHHHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 578899999986642 1111122 34689999999865322111111001111111124799999999999987
Q ss_pred hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354 246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (426)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~ 311 (426)
.... ..+....+.. . + ..+++++||++|.|+.+++++|...
T Consensus 119 ~~~~--~~~~~~~~~~---------------------~-~-~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 119 ERQV--SKEEGKALAK---------------------E-W-GCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred ccee--cHHHHHHHHH---------------------H-c-CCcEEEeccCCCCCHHHHHHHHHhh
Confidence 3211 0111111110 1 1 2579999999999999999998764
No 165
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.63 E-value=2.7e-15 Score=139.16 Aligned_cols=162 Identities=18% Similarity=0.219 Sum_probs=94.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
.|+++|..|||||||++++....+...... +..++.... .+..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~--------------Ti~~~~~~~----------------~i~~------- 44 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKS--------------GVGVDFKIK----------------TVEL------- 44 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCC--------------cceeEEEEE----------------EEEE-------
Confidence 589999999999999999998765432110 100000000 0000
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhc
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT 230 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~ 230 (426)
......+.||||+|+..+. .+...+ -..++++|+|+|.+...+-.. ....+..+......
T Consensus 45 -----------~~~~v~l~iwDtaGqe~~~-------~l~~~y-~~~ad~iIlVfDvtd~~Sf~~-l~~w~~~i~~~~~~ 104 (202)
T cd04120 45 -----------RGKKIRLQIWDTAGQERFN-------SITSAY-YRSAKGIILVYDITKKETFDD-LPKWMKMIDKYASE 104 (202)
T ss_pred -----------CCEEEEEEEEeCCCchhhH-------HHHHHH-hcCCCEEEEEEECcCHHHHHH-HHHHHHHHHHhCCC
Confidence 0123688999999997752 222222 135799999999876432211 11111111112234
Q ss_pred cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354 231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (426)
Q Consensus 231 ~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~ 310 (426)
++|+|||.||+|+.....+... ....+ + .......++.+||++|.||.++|.+|..
T Consensus 105 ~~piilVgNK~DL~~~~~v~~~--~~~~~------------------a----~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 105 DAELLLVGNKLDCETDREISRQ--QGEKF------------------A----QQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred CCcEEEEEECcccccccccCHH--HHHHH------------------H----HhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 6899999999999753321100 11100 0 0112356899999999999999999987
Q ss_pred HHH
Q 014354 311 SAQ 313 (426)
Q Consensus 311 ~~~ 313 (426)
.+.
T Consensus 161 ~~~ 163 (202)
T cd04120 161 DIL 163 (202)
T ss_pred HHH
Confidence 654
No 166
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.63 E-value=1.2e-15 Score=136.59 Aligned_cols=163 Identities=14% Similarity=0.249 Sum_probs=90.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
...+|+++|.+|||||||++++++..+..... + +..++... ..+..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~-------------~-~~~~~~~~----------------~~~~~---- 49 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLF-------------H-TIGVEFLN----------------KDLEV---- 49 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcC-------------C-ceeeEEEE----------------EEEEE----
Confidence 34689999999999999999999765432110 0 00000000 00000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCC--Cchh-hhhhHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMT-FMSNMLYAC 224 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~--~~~~-~~~~~l~~~ 224 (426)
......+.||||||+.++. ......+ ..+|++++|.|..... .... +........
T Consensus 50 --------------~~~~~~l~i~D~~G~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 107 (170)
T cd04116 50 --------------DGHFVTLQIWDTAGQERFR------SLRTPFY--RGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYA 107 (170)
T ss_pred --------------CCeEEEEEEEeCCChHHHH------HhHHHHh--cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhc
Confidence 0233578899999986641 1111122 3467888777765432 2211 111111111
Q ss_pred HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
......++|+++|+||+|+...... ......+.. .+...+++++||++|.|+.++
T Consensus 108 ~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~----------------------~~~~~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 108 DVKEPESFPFVVLGNKNDIPERQVS---TEEAQAWCR----------------------ENGDYPYFETSAKDATNVAAA 162 (170)
T ss_pred ccccCCCCcEEEEEECccccccccC---HHHHHHHHH----------------------HCCCCeEEEEECCCCCCHHHH
Confidence 1011246899999999998742211 111111110 122346899999999999999
Q ss_pred HHHHHHH
Q 014354 305 FKAVEES 311 (426)
Q Consensus 305 ~~~l~~~ 311 (426)
+..+.+.
T Consensus 163 ~~~~~~~ 169 (170)
T cd04116 163 FEEAVRR 169 (170)
T ss_pred HHHHHhh
Confidence 9988753
No 167
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.63 E-value=1.9e-14 Score=127.12 Aligned_cols=119 Identities=19% Similarity=0.227 Sum_probs=74.1
Q ss_pred CEEEEcCCCcccccchhc----hHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecC
Q 014354 167 DYVLVDTPGQIEIFTWSA----SGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKT 241 (426)
Q Consensus 167 ~~~liDTPGi~e~~~~~~----~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKi 241 (426)
.+.+|||||+........ ....+...+.. ...+++++++|......... ..+...+...+.|+++|+||+
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-----~~~~~~l~~~~~~vi~v~nK~ 120 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEID-----LEMLDWLEELGIPFLVVLTKA 120 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhH-----HHHHHHHHHcCCCEEEEEEch
Confidence 789999999765311111 11112222222 23578899999876543322 223344556679999999999
Q ss_pred CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354 242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (426)
Q Consensus 242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~ 311 (426)
|+............+... +..++...+++++||+++.|+.+++++|.+.
T Consensus 121 D~~~~~~~~~~~~~~~~~---------------------l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 121 DKLKKSELAKALKEIKKE---------------------LKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred hcCChHHHHHHHHHHHHH---------------------HHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 998765443333222211 1113445689999999999999999998764
No 168
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.63 E-value=5e-15 Score=132.98 Aligned_cols=162 Identities=19% Similarity=0.267 Sum_probs=93.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..+|+++|++|||||||++++++..+...... .+ .++.. ...+..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~-------t~-------~~~~~-----------------~~~~~~---- 46 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEA-------TI-------GVDFR-----------------ERTVEI---- 46 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCcccc-------ce-------eEEEE-----------------EEEEEE----
Confidence 36899999999999999999997664321110 00 00000 000000
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH-H
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI-L 227 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~-l 227 (426)
. .....+.||||||+.++. ..+...+ ...+|++++|+|+....+..... ..+..+.. .
T Consensus 47 ~-------------~~~~~~~i~Dt~G~~~~~------~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~ 105 (170)
T cd04115 47 D-------------GERIKVQLWDTAGQERFR------KSMVQHY-YRNVHAVVFVYDVTNMASFHSLP-SWIEECEQHS 105 (170)
T ss_pred C-------------CeEEEEEEEeCCChHHHH------HhhHHHh-hcCCCEEEEEEECCCHHHHHhHH-HHHHHHHHhc
Confidence 0 123678999999986541 1122211 13479999999997543322211 11111111 1
Q ss_pred hhccCCeEEEEecCCCCChHhHH-HHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeeccc---CCCHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS---GAGIEA 303 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~---g~gv~~ 303 (426)
...++|+|+|+||+|+....... .....+ . .. ...+++++||++ +.|+.+
T Consensus 106 ~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~---~----------------------~~-~~~~~~e~Sa~~~~~~~~i~~ 159 (170)
T cd04115 106 LPNEVPRILVGNKCDLREQIQVPTDLAQRF---A----------------------DA-HSMPLFETSAKDPSENDHVEA 159 (170)
T ss_pred CCCCCCEEEEEECccchhhcCCCHHHHHHH---H----------------------HH-cCCcEEEEeccCCcCCCCHHH
Confidence 23468999999999987543211 111111 1 11 236799999999 889999
Q ss_pred HHHHHHHHH
Q 014354 304 YFKAVEESA 312 (426)
Q Consensus 304 l~~~l~~~~ 312 (426)
++..+...+
T Consensus 160 ~f~~l~~~~ 168 (170)
T cd04115 160 IFMTLAHKL 168 (170)
T ss_pred HHHHHHHHh
Confidence 998887644
No 169
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.63 E-value=4.9e-15 Score=139.10 Aligned_cols=170 Identities=12% Similarity=0.143 Sum_probs=94.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+|+|.+|||||||+++++...+... .| +. ++.+....
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~~--------------~~-Ti----------------------g~~~~~~~---- 40 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKDT--------------VS-TV----------------------GGAFYLKQ---- 40 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCC--------------CC-cc----------------------ceEEEEEE----
Confidence 689999999999999999998764310 00 10 00000000
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH--h
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL--Y 228 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l--~ 228 (426)
...+.+.||||||+..+. .+...+ -..++++|+|+|.+...+-... ...+..+. .
T Consensus 41 ------------~~~~~l~iwDt~G~e~~~-------~l~~~~-~~~ad~~IlV~Dvt~~~Sf~~l---~~~~~~l~~~~ 97 (220)
T cd04126 41 ------------WGPYNISIWDTAGREQFH-------GLGSMY-CRGAAAVILTYDVSNVQSLEEL---EDRFLGLTDTA 97 (220)
T ss_pred ------------eeEEEEEEEeCCCcccch-------hhHHHH-hccCCEEEEEEECCCHHHHHHH---HHHHHHHHHhc
Confidence 123678999999997652 122222 1357999999998764322111 11111111 2
Q ss_pred hccCCeEEEEecCCCCChHhHH-------HH-----HHHHHHHHHHhccccchhhhHHHHhhh------hHhhhhcCCce
Q 014354 229 KTRLPLVLAFNKTDVAQHEFAL-------EW-----MQDFEVFQAAISSDHSYTSTLTNSLSL------ALDEFYKNLKS 290 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~~~~-------~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~~v 290 (426)
..++|+|||.||+|+....... .. ...+. . .....++++.+. .+.. ....++
T Consensus 98 ~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~-~--------~e~~~~a~~~~~~~~~~~~~~~-~~~~~~ 167 (220)
T cd04126 98 NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVT-L--------EDAKAFYKRINKYKMLDEDLSP-AAEKMC 167 (220)
T ss_pred CCCCcEEEEEECcccccccccccccccccccccccccccCC-H--------HHHHHHHHHhCccccccccccc-cccceE
Confidence 3468999999999997511000 00 00000 0 001111222110 0000 012579
Q ss_pred EEeecccCCCHHHHHHHHHHHHHH
Q 014354 291 VGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 291 v~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
+++||++|.||.++|..+.+.+.+
T Consensus 168 ~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 168 FETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999876654
No 170
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.63 E-value=5.7e-15 Score=131.83 Aligned_cols=161 Identities=16% Similarity=0.212 Sum_probs=94.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
...+|+++|++|||||||++++++.....+.. +.+ ..+.. ...+.
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~-------~t~-------~~~~~-----------------~~~~~---- 50 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQG-------ATI-------GVDFM-----------------IKTVE---- 50 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCC-------Cce-------eeEEE-----------------EEEEE----
Confidence 34789999999999999999999765432110 000 00000 00000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
. ......+.+|||||+..+. ......+ ..+|++++|+|.....+... ....+..+..+
T Consensus 51 -~------------~~~~~~~~~~D~~g~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~ 108 (169)
T cd04114 51 -I------------KGEKIKLQIWDTAGQERFR------SITQSYY--RSANALILTYDITCEESFRC-LPEWLREIEQY 108 (169)
T ss_pred -E------------CCEEEEEEEEECCCcHHHH------HHHHHHh--cCCCEEEEEEECcCHHHHHH-HHHHHHHHHHh
Confidence 0 0122467899999986541 1111222 34789999999865432111 11112222333
Q ss_pred hhccCCeEEEEecCCCCChHhHH-HHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
...++|.++|+||+|+....... .....+. .. ...+++++||++|.|+.++++
T Consensus 109 ~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~-------------------------~~-~~~~~~~~Sa~~~~gv~~l~~ 162 (169)
T cd04114 109 ANNKVITILVGNKIDLAERREVSQQRAEEFS-------------------------DA-QDMYYLETSAKESDNVEKLFL 162 (169)
T ss_pred CCCCCeEEEEEECcccccccccCHHHHHHHH-------------------------HH-cCCeEEEeeCCCCCCHHHHHH
Confidence 34578999999999987644321 1111111 11 125689999999999999999
Q ss_pred HHHHH
Q 014354 307 AVEES 311 (426)
Q Consensus 307 ~l~~~ 311 (426)
.|...
T Consensus 163 ~i~~~ 167 (169)
T cd04114 163 DLACR 167 (169)
T ss_pred HHHHH
Confidence 98864
No 171
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.63 E-value=1.3e-15 Score=136.62 Aligned_cols=116 Identities=15% Similarity=0.174 Sum_probs=68.7
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh----hccCCeEEEEe
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY----KTRLPLVLAFN 239 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~----~~~~P~IlVlN 239 (426)
.+..+.+|||||+..+. ......+ ..++++|||+|++....... . ...+..+. ..++|++||+|
T Consensus 41 ~~~~~~i~D~~G~~~~~------~~~~~~~--~~a~~ii~V~D~s~~~s~~~-~---~~~l~~l~~~~~~~~~piliv~N 108 (167)
T cd04161 41 DKYEVCIFDLGGGANFR------GIWVNYY--AEAHGLVFVVDSSDDDRVQE-V---KEILRELLQHPRVSGKPILVLAN 108 (167)
T ss_pred CCEEEEEEECCCcHHHH------HHHHHHH--cCCCEEEEEEECCchhHHHH-H---HHHHHHHHcCccccCCcEEEEEe
Confidence 34678999999986541 1111222 35799999999976432111 1 11111121 24789999999
Q ss_pred cCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccC------CCHHHHHHHHHH
Q 014354 240 KTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG------AGIEAYFKAVEE 310 (426)
Q Consensus 240 KiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g------~gv~~l~~~l~~ 310 (426)
|+|+.......++.+.+. +. . + .........++++||++| .|+.+-++||.+
T Consensus 109 K~Dl~~~~~~~~i~~~~~-l~-~----------~-------~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 109 KQDKKNALLGADVIEYLS-LE-K----------L-------VNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCCcCCCCHHHHHHhcC-cc-c----------c-------cCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 999977543333332211 00 0 0 001111246888999998 899999999964
No 172
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=5.6e-15 Score=137.92 Aligned_cols=165 Identities=20% Similarity=0.245 Sum_probs=94.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|+|+|.+|||||||++++++..+..... |.+ .++.... .+. +.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-------~ti-------~~d~~~~-----------------~i~----~~ 47 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSD-------PTV-------GVDFFSR-----------------LIE----IE 47 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC-------cee-------ceEEEEE-----------------EEE----EC
Confidence 579999999999999999999876543211 111 0000000 000 00
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH-HHHHHh
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSILY 228 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~-~~~~l~ 228 (426)
. .....+.||||||+..+. .+...+ ...+|++|+|+|..+..+-.. ....+. +.....
T Consensus 48 ~------------~~~~~l~i~Dt~G~~~~~-------~~~~~~-~~~~d~iilv~D~~~~~Sf~~-l~~~~~~i~~~~~ 106 (211)
T cd04111 48 P------------GVRIKLQLWDTAGQERFR-------SITRSY-YRNSVGVLLVFDITNRESFEH-VHDWLEEARSHIQ 106 (211)
T ss_pred C------------CCEEEEEEEeCCcchhHH-------HHHHHH-hcCCcEEEEEEECCCHHHHHH-HHHHHHHHHHhcC
Confidence 0 122578899999986541 122111 134799999999865322111 111111 111111
Q ss_pred hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l 308 (426)
....|++||.||+|+....... ......+. ..++ .+++++||++|.|+.+++++|
T Consensus 107 ~~~~~iilvgNK~Dl~~~~~v~--~~~~~~~~----------------------~~~~-~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 107 PHRPVFILVGHKCDLESQRQVT--REEAEKLA----------------------KDLG-MKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred CCCCeEEEEEEccccccccccC--HHHHHHHH----------------------HHhC-CEEEEEeCCCCCCHHHHHHHH
Confidence 2356789999999997643211 01111111 1122 679999999999999999999
Q ss_pred HHHHHHH
Q 014354 309 EESAQEF 315 (426)
Q Consensus 309 ~~~~~~~ 315 (426)
.+.+...
T Consensus 162 ~~~~~~~ 168 (211)
T cd04111 162 TQEIYER 168 (211)
T ss_pred HHHHHHH
Confidence 8877654
No 173
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.62 E-value=6.2e-15 Score=135.01 Aligned_cols=114 Identities=18% Similarity=0.226 Sum_probs=68.0
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDV 243 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKiDl 243 (426)
..+.||||||+.++. .+...+ ...+|++++|+|.....+ |.. ...++..+. ..++|+++|+||+|+
T Consensus 50 ~~l~i~D~~G~~~~~-------~~~~~~-~~~~d~iilv~d~~~~~s---~~~-~~~~~~~i~~~~~~~piilv~nK~Dl 117 (193)
T cd04118 50 VTLGIWDTAGSERYE-------AMSRIY-YRGAKAAIVCYDLTDSSS---FER-AKFWVKELQNLEEHCKIYLCGTKSDL 117 (193)
T ss_pred EEEEEEECCCchhhh-------hhhHhh-cCCCCEEEEEEECCCHHH---HHH-HHHHHHHHHhcCCCCCEEEEEEcccc
Confidence 467799999986541 111111 135799999999865322 111 111222233 236899999999998
Q ss_pred CChHhHH-HH-HHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 244 AQHEFAL-EW-MQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 244 ~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
....... .. ......+.. . ...+++++||++|.|+.+++++|.+.+..
T Consensus 118 ~~~~~~~~~v~~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 118 IEQDRSLRQVDFHDVQDFAD---------------------E--IKAQHFETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred cccccccCccCHHHHHHHHH---------------------H--cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 7542110 00 011111110 1 13568999999999999999999876644
No 174
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.62 E-value=4.9e-15 Score=131.19 Aligned_cols=108 Identities=20% Similarity=0.213 Sum_probs=65.8
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDV 243 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKiDl 243 (426)
..+.||||||+.++. .+...+ ...++++++|+|+....+ +. ....+...+. ..++|+|+|+||+|+
T Consensus 51 ~~~~i~D~~G~~~~~-------~~~~~~-~~~~~~~v~v~d~~~~~s---~~-~l~~~~~~~~~~~~~~p~iiv~nK~Dl 118 (162)
T cd04106 51 VRLMLWDTAGQEEFD-------AITKAY-YRGAQACILVFSTTDRES---FE-AIESWKEKVEAECGDIPMVLVQTKIDL 118 (162)
T ss_pred EEEEEeeCCchHHHH-------HhHHHH-hcCCCEEEEEEECCCHHH---HH-HHHHHHHHHHHhCCCCCEEEEEEChhc
Confidence 578999999986641 122221 135789999999865322 11 1111222222 247999999999999
Q ss_pred CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (426)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~ 310 (426)
........ +....+. ..+ ..+++++||++|.|+++++++|..
T Consensus 119 ~~~~~v~~--~~~~~~~----------------------~~~-~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 119 LDQAVITN--EEAEALA----------------------KRL-QLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred ccccCCCH--HHHHHHH----------------------HHc-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 76432110 1111111 111 247999999999999999998865
No 175
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.62 E-value=9.1e-15 Score=141.26 Aligned_cols=136 Identities=20% Similarity=0.234 Sum_probs=78.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
+.|+|+|++|+|||||+++|+.........+.+.+. + ...++..+ .. ..-.+.+...+..+..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~-~----~~~~t~~D---~~---~~e~~rg~si~~~~~~------ 65 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKAR-K----SRKHATSD---WM---EIEKQRGISVTSSVMQ------ 65 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceeccc-c----cCCCccCC---Cc---HHHHhCCCCeEEEEEE------
Confidence 579999999999999999999765443333222110 0 00011011 00 0011122111111111
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~ 229 (426)
+ ..+++.+.||||||+.++. ......+ ..+|++|+|+|+..+..... ..++..+..
T Consensus 66 --~---------~~~~~~i~liDTPG~~df~------~~~~~~l--~~aD~~IlVvda~~g~~~~~-----~~i~~~~~~ 121 (267)
T cd04169 66 --F---------EYRDCVINLLDTPGHEDFS------EDTYRTL--TAVDSAVMVIDAAKGVEPQT-----RKLFEVCRL 121 (267)
T ss_pred --E---------eeCCEEEEEEECCCchHHH------HHHHHHH--HHCCEEEEEEECCCCccHHH-----HHHHHHHHh
Confidence 0 1356899999999997752 1122222 24699999999988765433 223344556
Q ss_pred ccCCeEEEEecCCCCCh
Q 014354 230 TRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 230 ~~~P~IlVlNKiDl~~~ 246 (426)
.++|.++++||+|+...
T Consensus 122 ~~~P~iivvNK~D~~~a 138 (267)
T cd04169 122 RGIPIITFINKLDREGR 138 (267)
T ss_pred cCCCEEEEEECCccCCC
Confidence 68999999999998764
No 176
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.62 E-value=3.1e-15 Score=131.94 Aligned_cols=113 Identities=18% Similarity=0.228 Sum_probs=67.3
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~ 245 (426)
..+.+|||||+..+. .+...+ ...++++++|+|.......... ...+..+......++|+++|+||+|+..
T Consensus 49 ~~~~~~D~~g~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~ 119 (162)
T cd04123 49 IDLAIWDTAGQERYH-------ALGPIY-YRDADGAILVYDITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLER 119 (162)
T ss_pred EEEEEEECCchHHHH-------HhhHHH-hccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 468899999986642 122211 1347999999998654322111 1111111112223689999999999885
Q ss_pred hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354 246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA 312 (426)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~ 312 (426)
..... ...+..+.. . ...+++++||++|.|+.+++++|...+
T Consensus 120 ~~~~~--~~~~~~~~~---------------------~--~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 120 QRVVS--KSEAEEYAK---------------------S--VGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred ccCCC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 43210 011111110 1 135689999999999999999987653
No 177
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.62 E-value=5.8e-15 Score=134.63 Aligned_cols=163 Identities=17% Similarity=0.219 Sum_probs=92.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+++|.+|+|||||++++++..+..... |.+ ..+... .... .
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~-------~T~-------g~~~~~--------------------~~i~--~- 44 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYI-------QTL-------GVNFME--------------------KTIS--I- 44 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCC-------Ccc-------ceEEEE--------------------EEEE--E-
Confidence 68999999999999999999876542111 111 000000 0000 0
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhc
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT 230 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~ 230 (426)
......+.||||+|+..+. .+... ....++++++|+|.++..+.... ...+..+......
T Consensus 45 -----------~~~~~~l~iwDt~G~~~~~-------~~~~~-~~~~a~~iilv~D~t~~~s~~~i-~~~~~~~~~~~~~ 104 (182)
T cd04128 45 -----------RGTEITFSIWDLGGQREFI-------NMLPL-VCNDAVAILFMFDLTRKSTLNSI-KEWYRQARGFNKT 104 (182)
T ss_pred -----------CCEEEEEEEEeCCCchhHH-------HhhHH-HCcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCC
Confidence 0123678999999997652 12222 12457999999998654322111 0111111111123
Q ss_pred cCCeEEEEecCCCCCh---HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 231 RLPLVLAFNKTDVAQH---EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 231 ~~P~IlVlNKiDl~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
..| |+|+||+|+... .....+......+ + ... ..+++++||++|.|++++|.+
T Consensus 105 ~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~------------------a----~~~-~~~~~e~SAk~g~~v~~lf~~ 160 (182)
T cd04128 105 AIP-ILVGTKYDLFADLPPEEQEEITKQARKY------------------A----KAM-KAPLIFCSTSHSINVQKIFKI 160 (182)
T ss_pred CCE-EEEEEchhccccccchhhhhhHHHHHHH------------------H----HHc-CCEEEEEeCCCCCCHHHHHHH
Confidence 456 789999999632 1111111111111 1 112 257999999999999999999
Q ss_pred HHHHHHH
Q 014354 308 VEESAQE 314 (426)
Q Consensus 308 l~~~~~~ 314 (426)
+.+.+.+
T Consensus 161 l~~~l~~ 167 (182)
T cd04128 161 VLAKAFD 167 (182)
T ss_pred HHHHHHh
Confidence 9887755
No 178
>PLN03127 Elongation factor Tu; Provisional
Probab=99.62 E-value=7.2e-15 Score=151.53 Aligned_cols=118 Identities=22% Similarity=0.278 Sum_probs=73.6
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCe-EEEEecCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPL-VLAFNKTD 242 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~-IlVlNKiD 242 (426)
.+.++.|+||||+.++. ..+... ...+|++++|||+..+...++ ..++.++...++|. |+|+||+|
T Consensus 122 ~~~~i~~iDtPGh~~f~------~~~~~g--~~~aD~allVVda~~g~~~qt-----~e~l~~~~~~gip~iIvviNKiD 188 (447)
T PLN03127 122 AKRHYAHVDCPGHADYV------KNMITG--AAQMDGGILVVSAPDGPMPQT-----KEHILLARQVGVPSLVVFLNKVD 188 (447)
T ss_pred CCeEEEEEECCCccchH------HHHHHH--HhhCCEEEEEEECCCCCchhH-----HHHHHHHHHcCCCeEEEEEEeec
Confidence 44689999999996641 122221 234899999999998876665 34555667788995 67899999
Q ss_pred CCChHhHHHHH-HHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecc---cCCC-------HHHHHHHHHH
Q 014354 243 VAQHEFALEWM-QDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSV---SGAG-------IEAYFKAVEE 310 (426)
Q Consensus 243 l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~---~g~g-------v~~l~~~l~~ 310 (426)
++......+.. ..+..+...+ .| ...++++++||+ +|.| +..|+++|..
T Consensus 189 lv~~~~~~~~i~~~i~~~l~~~-------------------~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~ 249 (447)
T PLN03127 189 VVDDEELLELVEMELRELLSFY-------------------KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDE 249 (447)
T ss_pred cCCHHHHHHHHHHHHHHHHHHh-------------------CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHH
Confidence 98644322222 1222211110 11 124689999886 4544 5677777766
Q ss_pred HHH
Q 014354 311 SAQ 313 (426)
Q Consensus 311 ~~~ 313 (426)
.++
T Consensus 250 ~lp 252 (447)
T PLN03127 250 YIP 252 (447)
T ss_pred hCC
Confidence 554
No 179
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.62 E-value=5.6e-15 Score=151.10 Aligned_cols=116 Identities=22% Similarity=0.265 Sum_probs=74.9
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCC-CchhhhhhHHHHHHHHhhcc-CCeEEEEecCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTR-LPLVLAFNKTD 242 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~-~~~~~~~~~l~~~~~l~~~~-~P~IlVlNKiD 242 (426)
...+.||||||+.++. ..+... ...+|++++|||+..+. ..++.. .+..+...+ .|+|+|+||+|
T Consensus 79 ~~~i~liDtPGh~~f~------~~~~~g--~~~aD~aIlVVDa~~g~~~~qt~e-----~l~~l~~~gi~~iIVvvNK~D 145 (406)
T TIGR03680 79 LRRVSFVDAPGHETLM------ATMLSG--AALMDGALLVIAANEPCPQPQTKE-----HLMALEIIGIKNIVIVQNKID 145 (406)
T ss_pred ccEEEEEECCCHHHHH------HHHHHH--HHHCCEEEEEEECCCCccccchHH-----HHHHHHHcCCCeEEEEEEccc
Confidence 3578999999997652 112111 13579999999999876 444321 222333344 46899999999
Q ss_pred CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (426)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~ 313 (426)
+............+..+... .+....+++++||++|.|+..|+++|...++
T Consensus 146 l~~~~~~~~~~~~i~~~l~~--------------------~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 146 LVSKEKALENYEEIKEFVKG--------------------TVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred cCCHHHHHHHHHHHHhhhhh--------------------cccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 98765432222333221110 1123467999999999999999999987655
No 180
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.61 E-value=2.6e-15 Score=159.81 Aligned_cols=115 Identities=26% Similarity=0.330 Sum_probs=74.9
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
+.++.+|||||+.++......+......+....+|++++|+|+++.... ++....+...++|+++|+||+|+.
T Consensus 40 ~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~-------l~l~~ql~~~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 40 GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERN-------LYLTLQLLELGIPMILALNLVDEA 112 (591)
T ss_pred CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhh-------HHHHHHHHhcCCCEEEEEehhHHH
Confidence 3578999999998864332222222233344568999999999763211 222233445689999999999986
Q ss_pred ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA 312 (426)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~ 312 (426)
+...... +.+.+.. . -+.+++++||++|+|++++++++.+..
T Consensus 113 ~~~~i~~---d~~~L~~----------------------~-lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 113 EKKGIRI---DEEKLEE----------------------R-LGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred HhCCChh---hHHHHHH----------------------H-cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5432211 1121111 1 136899999999999999999998764
No 181
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.61 E-value=8.9e-15 Score=135.16 Aligned_cols=162 Identities=18% Similarity=0.221 Sum_probs=95.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
....|+|+|++|||||||++++.+..+..... | +..++.... .+...
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~-------~-------t~~~~~~~~----------------~~~~~--- 51 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYI-------T-------TIGVDFKIR----------------TVEIN--- 51 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcC-------c-------cccceeEEE----------------EEEEC---
Confidence 35789999999999999999999876432110 0 100000000 00000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
.....+.||||||+..+. .+...+- ..++++++|+|+....+ |.. ...++..+
T Consensus 52 ---------------~~~~~l~l~D~~G~~~~~-------~~~~~~~-~~a~~iilv~D~~~~~s---~~~-~~~~~~~i 104 (199)
T cd04110 52 ---------------GERVKLQIWDTAGQERFR-------TITSTYY-RGTHGVIVVYDVTNGES---FVN-VKRWLQEI 104 (199)
T ss_pred ---------------CEEEEEEEEeCCCchhHH-------HHHHHHh-CCCcEEEEEEECCCHHH---HHH-HHHHHHHH
Confidence 122478899999986641 1222111 34689999999975432 111 11122222
Q ss_pred h--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 228 Y--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 228 ~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
. ....|++||+||+|+....... ......+.. . ...+++++||++|.||.+++
T Consensus 105 ~~~~~~~piivVgNK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~e~Sa~~~~gi~~lf 159 (199)
T cd04110 105 EQNCDDVCKVLVGNKNDDPERKVVE--TEDAYKFAG---------------------Q--MGISLFETSAKENINVEEMF 159 (199)
T ss_pred HHhCCCCCEEEEEECcccccccccC--HHHHHHHHH---------------------H--cCCEEEEEECCCCcCHHHHH
Confidence 2 2358999999999987643211 011111100 1 12579999999999999999
Q ss_pred HHHHHHHHH
Q 014354 306 KAVEESAQE 314 (426)
Q Consensus 306 ~~l~~~~~~ 314 (426)
++|...+..
T Consensus 160 ~~l~~~~~~ 168 (199)
T cd04110 160 NCITELVLR 168 (199)
T ss_pred HHHHHHHHH
Confidence 999887654
No 182
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.61 E-value=1.9e-15 Score=133.45 Aligned_cols=172 Identities=19% Similarity=0.219 Sum_probs=105.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
+...+|+|+|.+|+|||||+|+++...+.......|-. | +.+..
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIga-d-----------------------------------FltKe 50 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGA-D-----------------------------------FLTKE 50 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccch-h-----------------------------------heeeE
Confidence 45689999999999999999999999887654433210 0 00000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEe--CCCCCCchhhhhhHHHH-
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVD--TPRSANPMTFMSNMLYA- 223 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVD--a~~~~~~~~~~~~~l~~- 223 (426)
+..+ .+-..++||||+|++++...+ ...+ ..+|++++|-| ....+....-|...+..
T Consensus 51 v~Vd------------~~~vtlQiWDTAGQERFqsLg------~aFY--RgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~q 110 (210)
T KOG0394|consen 51 VQVD------------DRSVTLQIWDTAGQERFQSLG------VAFY--RGADCCVLVYDVNNPKSFENLENWRKEFLIQ 110 (210)
T ss_pred EEEc------------CeEEEEEEEecccHHHhhhcc------ccee--cCCceEEEEeecCChhhhccHHHHHHHHHHh
Confidence 0000 122578999999999873221 1111 23577766654 44555555555443311
Q ss_pred HHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 224 ~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
.+.-.-..+|+||+.||+|+.......--... ...|+.+ -++.|++.+||+.+.+|.+
T Consensus 111 a~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~--------------Aq~WC~s--------~gnipyfEtSAK~~~NV~~ 168 (210)
T KOG0394|consen 111 ASPQDPETFPFVILGNKIDVDGGKSRQVSEKK--------------AQTWCKS--------KGNIPYFETSAKEATNVDE 168 (210)
T ss_pred cCCCCCCcccEEEEcccccCCCCccceeeHHH--------------HHHHHHh--------cCCceeEEecccccccHHH
Confidence 11111246999999999999763211000000 1112222 3568899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014354 304 YFKAVEESAQEFM 316 (426)
Q Consensus 304 l~~~l~~~~~~~~ 316 (426)
.|..+.+.+....
T Consensus 169 AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 169 AFEEIARRALANE 181 (210)
T ss_pred HHHHHHHHHHhcc
Confidence 9999988776654
No 183
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.61 E-value=6.3e-15 Score=132.53 Aligned_cols=162 Identities=15% Similarity=0.198 Sum_probs=94.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHccccc-CCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS-RNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~-~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
++..+|+++|.+|||||||++++++..+. .... | +...... + ..+..
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~-------~-------T~~~~~~--~--------------~~~~~-- 49 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYS-------P-------TIKPRYA--V--------------NTVEV-- 49 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCC-------C-------ccCcceE--E--------------EEEEE--
Confidence 46789999999999999999999987654 2111 1 1100000 0 00000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
. .....+++|||+|...+. .+...+ -..+|++++|+|+.... .+.. ...+..
T Consensus 50 ---~-------------~~~~~l~~~d~~g~~~~~-------~~~~~~-~~~~d~~llv~d~~~~~---s~~~-~~~~~~ 101 (169)
T cd01892 50 ---Y-------------GQEKYLILREVGEDEVAI-------LLNDAE-LAACDVACLVYDSSDPK---SFSY-CAEVYK 101 (169)
T ss_pred ---C-------------CeEEEEEEEecCCccccc-------ccchhh-hhcCCEEEEEEeCCCHH---HHHH-HHHHHH
Confidence 0 122467899999987652 111111 14579999999986532 2211 112222
Q ss_pred HHh-hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 226 ILY-KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 226 ~l~-~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
.+. ..++|+++|+||+|+...... .......+. ..++...++++||++|.|+.++
T Consensus 102 ~~~~~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~~v~~l 157 (169)
T cd01892 102 KYFMLGEIPCLFVAAKADLDEQQQR--YEVQPDEFC----------------------RKLGLPPPLHFSSKLGDSSNEL 157 (169)
T ss_pred HhccCCCCeEEEEEEcccccccccc--cccCHHHHH----------------------HHcCCCCCEEEEeccCccHHHH
Confidence 222 237899999999998654311 000111111 1122234689999999999999
Q ss_pred HHHHHHHH
Q 014354 305 FKAVEESA 312 (426)
Q Consensus 305 ~~~l~~~~ 312 (426)
++.|.+.+
T Consensus 158 f~~l~~~~ 165 (169)
T cd01892 158 FTKLATAA 165 (169)
T ss_pred HHHHHHHh
Confidence 99998765
No 184
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.61 E-value=9.6e-15 Score=139.58 Aligned_cols=160 Identities=17% Similarity=0.197 Sum_probs=91.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+++|.+|||||||++++++..+..... | + + .+.. ...+. .
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~-------p-------T--i--~d~~--------------~k~~~-i----- 43 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYT-------P-------T--I--EDFH--------------RKLYS-I----- 43 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCC-------C-------C--h--hHhE--------------EEEEE-E-----
Confidence 68999999999999999999776542110 1 1 0 0000 00000 0
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH---
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL--- 227 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l--- 227 (426)
....+.+.||||+|+..+. .+.. .....+|++|+|+|.....+-.. ....+..+...
T Consensus 44 -----------~~~~~~l~I~Dt~G~~~~~-------~~~~-~~~~~ad~iIlVfdv~~~~Sf~~-i~~~~~~I~~~k~~ 103 (247)
T cd04143 44 -----------RGEVYQLDILDTSGNHPFP-------AMRR-LSILTGDVFILVFSLDNRESFEE-VCRLREQILETKSC 103 (247)
T ss_pred -----------CCEEEEEEEEECCCChhhh-------HHHH-HHhccCCEEEEEEeCCCHHHHHH-HHHHHHHHHHhhcc
Confidence 0123678899999987652 1111 11234789999999875322111 01101111101
Q ss_pred ------hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354 228 ------YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (426)
Q Consensus 228 ------~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv 301 (426)
...++|+|||+||+|+...... ....+..+.. ......++++||++|.|+
T Consensus 104 ~~~~~~~~~~~piIivgNK~Dl~~~~~v--~~~ei~~~~~----------------------~~~~~~~~evSAktg~gI 159 (247)
T cd04143 104 LKNKTKENVKIPMVICGNKADRDFPREV--QRDEVEQLVG----------------------GDENCAYFEVSAKKNSNL 159 (247)
T ss_pred cccccccCCCCcEEEEEECccchhcccc--CHHHHHHHHH----------------------hcCCCEEEEEeCCCCCCH
Confidence 1246899999999999753211 1111211110 012356999999999999
Q ss_pred HHHHHHHHHHH
Q 014354 302 EAYFKAVEESA 312 (426)
Q Consensus 302 ~~l~~~l~~~~ 312 (426)
++++.+|...+
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 185
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.61 E-value=4.1e-15 Score=132.60 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=66.5
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDV 243 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKiDl 243 (426)
..+.||||||+...+.. .....+ ..+|++|+|+|+....+... .......+.... ..++|+|+|+||+|+
T Consensus 47 ~~~~i~D~~g~~~~~~~-----~~~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl 118 (165)
T cd04146 47 VSLEILDTAGQQQADTE-----QLERSI--RWADGFVLVYSITDRSSFDE-ISQLKQLIREIKKRDREIPVILVGNKADL 118 (165)
T ss_pred EEEEEEECCCCcccccc-----hHHHHH--HhCCEEEEEEECCCHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECCch
Confidence 56889999999752110 111122 34699999999976432211 111111122222 347999999999998
Q ss_pred CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccC-CCHHHHHHHHHHHH
Q 014354 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG-AGIEAYFKAVEESA 312 (426)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g-~gv~~l~~~l~~~~ 312 (426)
.....+.. .....+ + ..+ ..+++++||++| .|+.++|..|...+
T Consensus 119 ~~~~~v~~--~~~~~~------------------~----~~~-~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 119 LHYRQVST--EEGEKL------------------A----SEL-GCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred HHhCccCH--HHHHHH------------------H----HHc-CCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 64321110 011100 0 111 256899999999 59999999998754
No 186
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.61 E-value=7.3e-15 Score=151.29 Aligned_cols=110 Identities=16% Similarity=0.221 Sum_probs=67.0
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCC--CCCchhhhhhHHHHHHHHhhccC-CeEEEEec
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSILYKTRL-PLVLAFNK 240 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~--~~~~~~~~~~~l~~~~~l~~~~~-P~IlVlNK 240 (426)
++..+.||||||+.++. ..+... ...+|++++|||+.. +...++.. .+..+...+. |+|+|+||
T Consensus 82 ~~~~i~liDtpG~~~~~------~~~~~~--~~~aD~~ilVvDa~~~~~~~~~~~~-----~~~~~~~~~~~~iivviNK 148 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFV------KNMITG--ASQADAAVLVVAADDAGGVMPQTRE-----HVFLARTLGINQLIVAINK 148 (425)
T ss_pred CCeEEEEEECCCcccch------hhHhhc--hhcCCEEEEEEEcccCCCCCcchHH-----HHHHHHHcCCCeEEEEEEc
Confidence 45789999999986642 111111 145799999999987 65554422 2223344454 58899999
Q ss_pred CCCCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCCCHHHHH
Q 014354 241 TDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 241 iDl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~gv~~l~ 305 (426)
+|+... .......+.+..+... . .+ ....+++++||++|.|+.++.
T Consensus 149 ~Dl~~~~~~~~~~~~~~i~~~l~~--------------~-----g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 149 MDAVNYDEKRYEEVKEEVSKLLKM--------------V-----GYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred cccccccHHHHHHHHHHHHHHHHh--------------h-----CCCcCcceEEEeecccCCCccccc
Confidence 999862 2112222233222111 0 01 013679999999999998765
No 187
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.61 E-value=8.8e-15 Score=132.97 Aligned_cols=170 Identities=14% Similarity=0.108 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|+++|.+|||||||++++++..+.......+ .. .+...+ ..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~-------~~-~~~~~~-----------------------~~------ 44 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTV-------FE-NYTASF-----------------------EI------ 44 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCce-------EE-EEEEEE-----------------------EE------
Confidence 469999999999999999999876543221111 00 000000 00
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY- 228 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~- 228 (426)
......+.||||||+..+. .+... .-..++++|+|.|.+...+-.... ..+...+.
T Consensus 45 ------------~~~~~~l~iwDt~G~~~~~-------~~~~~-~~~~a~~~ilvfdit~~~Sf~~~~---~~w~~~i~~ 101 (178)
T cd04131 45 ------------DEQRIELSLWDTSGSPYYD-------NVRPL-CYPDSDAVLICFDISRPETLDSVL---KKWRGEIQE 101 (178)
T ss_pred ------------CCEEEEEEEEECCCchhhh-------hcchh-hcCCCCEEEEEEECCChhhHHHHH---HHHHHHHHH
Confidence 0133678999999987652 11111 113478999999986543321111 11111122
Q ss_pred -hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC-HHHHHH
Q 014354 229 -KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-IEAYFK 306 (426)
Q Consensus 229 -~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g-v~~l~~ 306 (426)
..+.|+|||.||+|+...... . ..+ ... + ...+....+.-+...++..+++.+||++|+| |.++|.
T Consensus 102 ~~~~~~iilVgnK~DL~~~~~~--~-~~~---~~~-~-----~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~ 169 (178)
T cd04131 102 FCPNTKVLLVGCKTDLRTDLST--L-MEL---SHQ-R-----QAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFH 169 (178)
T ss_pred HCCCCCEEEEEEChhhhcChhH--H-HHH---Hhc-C-----CCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHH
Confidence 247899999999998642110 0 000 000 0 0001111122222222324689999999995 999999
Q ss_pred HHHHH
Q 014354 307 AVEES 311 (426)
Q Consensus 307 ~l~~~ 311 (426)
.+.+.
T Consensus 170 ~~~~~ 174 (178)
T cd04131 170 VATMA 174 (178)
T ss_pred HHHHH
Confidence 88874
No 188
>PRK12735 elongation factor Tu; Reviewed
Probab=99.60 E-value=8e-15 Score=149.52 Aligned_cols=117 Identities=18% Similarity=0.225 Sum_probs=71.8
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeE-EEEecCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLV-LAFNKTD 242 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~I-lVlNKiD 242 (426)
.+.++.||||||+.++. ..+.. ....+|++++|||+..+...++ ...+..+...++|.+ +|+||+|
T Consensus 73 ~~~~i~~iDtPGh~~f~------~~~~~--~~~~aD~~llVvda~~g~~~qt-----~e~l~~~~~~gi~~iivvvNK~D 139 (396)
T PRK12735 73 ANRHYAHVDCPGHADYV------KNMIT--GAAQMDGAILVVSAADGPMPQT-----REHILLARQVGVPYIVVFLNKCD 139 (396)
T ss_pred CCcEEEEEECCCHHHHH------HHHHh--hhccCCEEEEEEECCCCCchhH-----HHHHHHHHHcCCCeEEEEEEecC
Confidence 44689999999986531 11211 1245899999999998776654 233445566789976 5799999
Q ss_pred CCChHhHHHH-HHHHHHHHHHhccccchhhhHHHHhhhhHhhhh-cCCceEEeecccCC----------CHHHHHHHHHH
Q 014354 243 VAQHEFALEW-MQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGA----------GIEAYFKAVEE 310 (426)
Q Consensus 243 l~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~vv~vSA~~g~----------gv~~l~~~l~~ 310 (426)
+.......+. ...+..+... . .+. .+.+++++||++|. |+..|+++|..
T Consensus 140 l~~~~~~~~~~~~ei~~~l~~--------------~-----~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~ 200 (396)
T PRK12735 140 MVDDEELLELVEMEVRELLSK--------------Y-----DFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDS 200 (396)
T ss_pred CcchHHHHHHHHHHHHHHHHH--------------c-----CCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHh
Confidence 9864332222 2233322211 0 011 24789999999995 45566666655
Q ss_pred HH
Q 014354 311 SA 312 (426)
Q Consensus 311 ~~ 312 (426)
.+
T Consensus 201 ~~ 202 (396)
T PRK12735 201 YI 202 (396)
T ss_pred cC
Confidence 43
No 189
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3.2e-15 Score=149.89 Aligned_cols=173 Identities=22% Similarity=0.187 Sum_probs=113.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
.+.+..|+|+|+||||||||||+|++..+++ |+..|+|| ||.+.+ .++
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsI------------VSpv~GTT----RDaiea--------------~v~-- 312 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSI------------VSPVPGTT----RDAIEA--------------QVT-- 312 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceE------------eCCCCCcc----hhhhee--------------Eee--
Confidence 3467899999999999999999999998775 89999999 877631 122
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
-.++.+.|+||+|+.+-.........+.+..++ ..+|++++|||+..+....+.. ++
T Consensus 313 -----------------~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~-----i~ 370 (531)
T KOG1191|consen 313 -----------------VNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLK-----IA 370 (531)
T ss_pred -----------------cCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchH-----HH
Confidence 256899999999998831111122223333333 4589999999997765554422 22
Q ss_pred HHHh------h------ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCC-ceE
Q 014354 225 SILY------K------TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNL-KSV 291 (426)
Q Consensus 225 ~~l~------~------~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~vv 291 (426)
+.+. . ...|.++|.||+|+..+-....+.-... .. ....+.. .++
T Consensus 371 ~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~-~~---------------------~~~~~~~~i~~ 428 (531)
T KOG1191|consen 371 RILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVY-PS---------------------AEGRSVFPIVV 428 (531)
T ss_pred HHHHHhccceEEEeccccccceEEEechhhccCccccccCCceec-cc---------------------cccCcccceEE
Confidence 2222 1 2368899999999988721101100000 00 0001122 355
Q ss_pred EeecccCCCHHHHHHHHHHHHHH
Q 014354 292 GVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 292 ~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
.+||++++|+..|..++......
T Consensus 429 ~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 429 EVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred EeeechhhhHHHHHHHHHHHHHH
Confidence 59999999999999999876554
No 190
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.60 E-value=1.3e-14 Score=132.42 Aligned_cols=172 Identities=13% Similarity=0.133 Sum_probs=95.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
...+|+++|.+|+|||||+++++...+.......+ .. .+...+ ..
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~-------~~-~~~~~~-----------------------~~---- 48 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-------FE-NYTASF-----------------------EI---- 48 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCce-------ee-eeEEEE-----------------------EE----
Confidence 34689999999999999999999876543221111 00 000000 00
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
......+.||||+|+.++. .+... .-..+|++++|.|.+...+-.... ..+...+
T Consensus 49 --------------~~~~~~l~iwDtaG~e~~~-------~~~~~-~~~~ad~~ilvyDit~~~Sf~~~~---~~w~~~i 103 (182)
T cd04172 49 --------------DTQRIELSLWDTSGSPYYD-------NVRPL-SYPDSDAVLICFDISRPETLDSVL---KKWKGEI 103 (182)
T ss_pred --------------CCEEEEEEEEECCCchhhH-------hhhhh-hcCCCCEEEEEEECCCHHHHHHHH---HHHHHHH
Confidence 0233678999999997652 12211 123479999999986543221110 1111222
Q ss_pred h--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC-HHHH
Q 014354 228 Y--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-IEAY 304 (426)
Q Consensus 228 ~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g-v~~l 304 (426)
. ..+.|+|||.||+|+...... .. . +... + ...+....+..+....+..+++.+||++|.| |.++
T Consensus 104 ~~~~~~~piilVgNK~DL~~~~~~--~~-~---~~~~-~-----~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~ 171 (182)
T cd04172 104 QEFCPNTKMLLVGCKSDLRTDLTT--LV-E---LSNH-R-----QTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 171 (182)
T ss_pred HHHCCCCCEEEEeEChhhhcChhh--HH-H---HHhc-C-----CCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHH
Confidence 2 236899999999998642110 00 0 0000 0 0001111122222222334799999999998 9999
Q ss_pred HHHHHHH
Q 014354 305 FKAVEES 311 (426)
Q Consensus 305 ~~~l~~~ 311 (426)
|..+...
T Consensus 172 F~~~~~~ 178 (182)
T cd04172 172 FHVATLA 178 (182)
T ss_pred HHHHHHH
Confidence 9988774
No 191
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.60 E-value=2.8e-15 Score=140.77 Aligned_cols=108 Identities=18% Similarity=0.242 Sum_probs=63.5
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCC-------CCchhhhhhHHHHHHHHhhcc-CCeE
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS-------ANPMTFMSNMLYACSILYKTR-LPLV 235 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~-------~~~~~~~~~~l~~~~~l~~~~-~P~I 235 (426)
++..+.||||||+.++. ..+... ...+|++|+|||+..+ ...+. ...+..+...+ .|+|
T Consensus 75 ~~~~i~liDtpG~~~~~------~~~~~~--~~~~d~~i~VvDa~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ii 141 (219)
T cd01883 75 EKYRFTILDAPGHRDFV------PNMITG--ASQADVAVLVVDARKGEFEAGFEKGGQT-----REHALLARTLGVKQLI 141 (219)
T ss_pred CCeEEEEEECCChHHHH------HHHHHH--hhhCCEEEEEEECCCCccccccccccch-----HHHHHHHHHcCCCeEE
Confidence 56789999999986541 111111 2457999999999874 22222 11222233444 5788
Q ss_pred EEEecCCCCCh----HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354 236 LAFNKTDVAQH----EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 236 lVlNKiDl~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~ 302 (426)
+|+||+|+... .....+...+..+...+ + -.....+++++||++|.|+.
T Consensus 142 ivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~--------------~----~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 142 VAVNKMDDVTVNWSEERYDEIKKELSPFLKKV--------------G----YNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred EEEEccccccccccHHHHHHHHHHHHHHHHHc--------------C----CCcCCceEEEeecCcCCCCC
Confidence 89999999842 22223333332211110 0 00113679999999999987
No 192
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.60 E-value=1.1e-14 Score=133.06 Aligned_cols=116 Identities=13% Similarity=0.092 Sum_probs=68.9
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~ 245 (426)
..+.||||||+..+. .+...+ ...+|++++|+|.....+-.. ....+...........|.|+|+||+|+..
T Consensus 49 ~~~~i~Dt~g~~~~~-------~~~~~~-~~~~d~iilv~d~~~~~s~~~-i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~ 119 (188)
T cd04125 49 IKLQIWDTNGQERFR-------SLNNSY-YRGAHGYLLVYDVTDQESFEN-LKFWINEINRYARENVIKVIVANKSDLVN 119 (188)
T ss_pred EEEEEEECCCcHHHH-------hhHHHH-ccCCCEEEEEEECcCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCCCcc
Confidence 578899999986541 111111 134799999999865332111 11111111112223579999999999875
Q ss_pred hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHH
Q 014354 246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF 315 (426)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~ 315 (426)
...... .....+. ... ..+++.+||++|.|+.+++.+|.+.+...
T Consensus 120 ~~~v~~--~~~~~~~----------------------~~~-~~~~~evSa~~~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 120 NKVVDS--NIAKSFC----------------------DSL-NIPFFETSAKQSINVEEAFILLVKLIIKR 164 (188)
T ss_pred cccCCH--HHHHHHH----------------------HHc-CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 432110 0001000 111 34799999999999999999998877653
No 193
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.60 E-value=1.4e-14 Score=149.35 Aligned_cols=116 Identities=15% Similarity=0.186 Sum_probs=77.5
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCC-CCchhhhhhHHHHHHHHhhccC-CeEEEEecCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS-ANPMTFMSNMLYACSILYKTRL-PLVLAFNKTDV 243 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~-~~~~~~~~~~l~~~~~l~~~~~-P~IlVlNKiDl 243 (426)
..+.||||||+.++. ..+... ...+|++++|||+..+ ..+++. ..+..+...++ |.|+|+||+|+
T Consensus 117 ~~i~~IDtPGH~~fi------~~m~~g--~~~~D~alLVVda~~g~~~~qT~-----ehl~i~~~lgi~~iIVvlNKiDl 183 (460)
T PTZ00327 117 RHVSFVDCPGHDILM------ATMLNG--AAVMDAALLLIAANESCPQPQTS-----EHLAAVEIMKLKHIIILQNKIDL 183 (460)
T ss_pred ceEeeeeCCCHHHHH------HHHHHH--HhhCCEEEEEEECCCCccchhhH-----HHHHHHHHcCCCcEEEEEecccc
Confidence 478999999986541 222222 2457999999999975 455442 22333444455 47889999999
Q ss_pred CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
+......+....+..+... .+..+.++|++||++|.|++.|+++|.+.++.
T Consensus 184 v~~~~~~~~~~ei~~~l~~--------------------~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 184 VKEAQAQDQYEEIRNFVKG--------------------TIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred cCHHHHHHHHHHHHHHHHh--------------------hccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 9766544444444432211 12345789999999999999999999876653
No 194
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.60 E-value=5.7e-15 Score=153.51 Aligned_cols=110 Identities=17% Similarity=0.211 Sum_probs=68.1
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhcc-CCeEEEEecCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTR-LPLVLAFNKTD 242 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~-~P~IlVlNKiD 242 (426)
++.+++||||||+.++. ..+... ...+|++|+|||+..+...++.. .+.++...+ .|+|+|+||+|
T Consensus 105 ~~~~i~~iDTPGh~~f~------~~~~~~--l~~aD~allVVDa~~G~~~qt~~-----~~~l~~~lg~~~iIvvvNKiD 171 (474)
T PRK05124 105 EKRKFIIADTPGHEQYT------RNMATG--ASTCDLAILLIDARKGVLDQTRR-----HSFIATLLGIKHLVVAVNKMD 171 (474)
T ss_pred CCcEEEEEECCCcHHHH------HHHHHH--HhhCCEEEEEEECCCCccccchH-----HHHHHHHhCCCceEEEEEeec
Confidence 45789999999976531 122222 25579999999999988765522 122223333 46888999999
Q ss_pred CCChH--hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 243 VAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 243 l~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
++... ....+...+..+... + .+..+.++|++||++|.|+..+.
T Consensus 172 ~~~~~~~~~~~i~~~l~~~~~~--------------~-----~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 172 LVDYSEEVFERIREDYLTFAEQ--------------L-----PGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred cccchhHHHHHHHHHHHHHHHh--------------c-----CCCCCceEEEEEeecCCCccccc
Confidence 98532 222233333221111 0 11235789999999999998754
No 195
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.60 E-value=2e-14 Score=124.65 Aligned_cols=140 Identities=20% Similarity=0.156 Sum_probs=87.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|.|+|+.|||||||+++|.+......+ |. .+.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~K----------------Tq-----------------------~i~------- 35 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKK----------------TQ-----------------------AIE------- 35 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCc----------------cc-----------------------eeE-------
Confidence 36999999999999999999997633110 11 001
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~ 229 (426)
+.=.+|||||-.-- ++.+...+.. .+..+|+|++|.|+......... .+...
T Consensus 36 ----------------~~~~~IDTPGEyiE--~~~~y~aLi~--ta~dad~V~ll~dat~~~~~~pP--------~fa~~ 87 (143)
T PF10662_consen 36 ----------------YYDNTIDTPGEYIE--NPRFYHALIV--TAQDADVVLLLQDATEPRSVFPP--------GFASM 87 (143)
T ss_pred ----------------ecccEEECChhhee--CHHHHHHHHH--HHhhCCEEEEEecCCCCCccCCc--------hhhcc
Confidence 11136999994221 1111122211 23568999999999876543110 11233
Q ss_pred ccCCeEEEEecCCCCC-hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354 230 TRLPLVLAFNKTDVAQ-HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (426)
Q Consensus 230 ~~~P~IlVlNKiDl~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l 308 (426)
.+.|+|-|+||+|+.+ .+.+....+.+ .. .+...+|.||+.+|+|+++|+++|
T Consensus 88 f~~pvIGVITK~Dl~~~~~~i~~a~~~L---~~-----------------------aG~~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 88 FNKPVIGVITKIDLPSDDANIERAKKWL---KN-----------------------AGVKEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred cCCCEEEEEECccCccchhhHHHHHHHH---HH-----------------------cCCCCeEEEECCCCcCHHHHHHHH
Confidence 4789999999999994 33222221111 11 133468999999999999999988
Q ss_pred H
Q 014354 309 E 309 (426)
Q Consensus 309 ~ 309 (426)
.
T Consensus 142 ~ 142 (143)
T PF10662_consen 142 E 142 (143)
T ss_pred h
Confidence 5
No 196
>PLN03110 Rab GTPase; Provisional
Probab=99.60 E-value=1.2e-14 Score=136.27 Aligned_cols=161 Identities=17% Similarity=0.184 Sum_probs=97.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
...+|+++|++|||||||+++|++..+..... | +..++... ..+.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~-------~-------t~g~~~~~-----------------~~v~---- 55 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESK-------S-------TIGVEFAT-----------------RTLQ---- 55 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCC-------C-------ceeEEEEE-----------------EEEE----
Confidence 44689999999999999999999876432110 0 00000000 0000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
. ......+.||||||+.++. .+...+- ..++++|+|+|......... ...++..+
T Consensus 56 -~------------~~~~~~l~l~Dt~G~~~~~-------~~~~~~~-~~~~~~ilv~d~~~~~s~~~----~~~~~~~~ 110 (216)
T PLN03110 56 -V------------EGKTVKAQIWDTAGQERYR-------AITSAYY-RGAVGALLVYDITKRQTFDN----VQRWLREL 110 (216)
T ss_pred -E------------CCEEEEEEEEECCCcHHHH-------HHHHHHh-CCCCEEEEEEECCChHHHHH----HHHHHHHH
Confidence 0 0123578999999986641 2222221 34789999999865332111 11222223
Q ss_pred h---hccCCeEEEEecCCCCChHhHH-HHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 228 Y---KTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 228 ~---~~~~P~IlVlNKiDl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
. ..++|+++|+||+|+....... +....+. .. ...+++++||++|.|+.+
T Consensus 111 ~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~-------------------------~~-~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 111 RDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALA-------------------------EK-EGLSFLETSALEATNVEK 164 (216)
T ss_pred HHhCCCCCeEEEEEEChhcccccCCCHHHHHHHH-------------------------HH-cCCEEEEEeCCCCCCHHH
Confidence 2 3478999999999986543211 1111110 11 246799999999999999
Q ss_pred HHHHHHHHHHH
Q 014354 304 YFKAVEESAQE 314 (426)
Q Consensus 304 l~~~l~~~~~~ 314 (426)
++++|...+..
T Consensus 165 lf~~l~~~i~~ 175 (216)
T PLN03110 165 AFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHH
Confidence 99999887765
No 197
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.60 E-value=5.8e-15 Score=159.03 Aligned_cols=108 Identities=20% Similarity=0.261 Sum_probs=67.6
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhcc-CCeEEEEecCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTR-LPLVLAFNKTD 242 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~-~P~IlVlNKiD 242 (426)
++.+++||||||+.++. ..+.. ....+|++++|||+..+..+++. ..+.++...+ .|+|+|+||+|
T Consensus 102 ~~~~~~liDtPG~~~f~------~~~~~--~~~~aD~~llVvda~~g~~~~t~-----e~~~~~~~~~~~~iivvvNK~D 168 (632)
T PRK05506 102 PKRKFIVADTPGHEQYT------RNMVT--GASTADLAIILVDARKGVLTQTR-----RHSFIASLLGIRHVVLAVNKMD 168 (632)
T ss_pred CCceEEEEECCChHHHH------HHHHH--HHHhCCEEEEEEECCCCccccCH-----HHHHHHHHhCCCeEEEEEEecc
Confidence 55789999999986541 11222 12457999999999988776542 2222334444 46788999999
Q ss_pred CCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 243 VAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 243 l~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
++.. .....+...+..+... + .+...++|++||++|.|+.++
T Consensus 169 ~~~~~~~~~~~i~~~i~~~~~~--------------~------~~~~~~iipiSA~~g~ni~~~ 212 (632)
T PRK05506 169 LVDYDQEVFDEIVADYRAFAAK--------------L------GLHDVTFIPISALKGDNVVTR 212 (632)
T ss_pred cccchhHHHHHHHHHHHHHHHH--------------c------CCCCccEEEEecccCCCcccc
Confidence 9852 2222232333222111 0 123467999999999999854
No 198
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.59 E-value=4.1e-15 Score=133.09 Aligned_cols=114 Identities=16% Similarity=0.163 Sum_probs=66.6
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-hccCCeEEEEecCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-KTRLPLVLAFNKTD 242 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-~~~~P~IlVlNKiD 242 (426)
++..+.||||||+.++.. .....+ ..+|++|+|+|+..... +......+...+. ..++|+++|+||+|
T Consensus 42 ~~~~l~i~Dt~G~~~~~~------~~~~~~--~~ad~ii~V~D~t~~~s---~~~~~~~l~~~~~~~~~~piilv~NK~D 110 (164)
T cd04162 42 QDAIMELLEIGGSQNLRK------YWKRYL--SGSQGLIFVVDSADSER---LPLARQELHQLLQHPPDLPLVVLANKQD 110 (164)
T ss_pred CCeEEEEEECCCCcchhH------HHHHHH--hhCCEEEEEEECCCHHH---HHHHHHHHHHHHhCCCCCcEEEEEeCcC
Confidence 346899999999976521 111122 34699999999876432 1111111112222 25799999999999
Q ss_pred CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeeccc------CCCHHHHHHHHH
Q 014354 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS------GAGIEAYFKAVE 309 (426)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~------g~gv~~l~~~l~ 309 (426)
+........+...+. +. .+.+ .....++++||++ ++||.++|+.+.
T Consensus 111 l~~~~~~~~i~~~~~-~~-----------~~~~---------~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 111 LPAARSVQEIHKELE-LE-----------PIAR---------GRRWILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred CcCCCCHHHHHHHhC-Ch-----------hhcC---------CCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 876543222221111 00 0000 0124578888888 999999998875
No 199
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.59 E-value=1.1e-14 Score=136.92 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=68.6
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh----ccCCeEEEEec
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK----TRLPLVLAFNK 240 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~----~~~P~IlVlNK 240 (426)
...+.||||||+.. .+...+....+|++++|+|+....+ |... ..++..+.. .++|+|||+||
T Consensus 49 ~~~l~i~Dt~G~~~---------~~~~~~~~~~ad~iilV~d~td~~S---~~~~-~~~~~~l~~~~~~~~~piilV~NK 115 (221)
T cd04148 49 ESTLVVIDHWEQEM---------WTEDSCMQYQGDAFVVVYSVTDRSS---FERA-SELRIQLRRNRQLEDRPIILVGNK 115 (221)
T ss_pred EEEEEEEeCCCcch---------HHHhHHhhcCCCEEEEEEECCCHHH---HHHH-HHHHHHHHHhcCCCCCCEEEEEEC
Confidence 36789999999862 1111111115799999999976432 2111 112222222 46899999999
Q ss_pred CCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 241 iDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
+|+....... .+....+. ..+ ..+++++||++|.||.+++++|...+..
T Consensus 116 ~Dl~~~~~v~--~~~~~~~a----------------------~~~-~~~~~e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 116 SDLARSREVS--VQEGRACA----------------------VVF-DCKFIETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred hhccccceec--HHHHHHHH----------------------HHc-CCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 9987653211 00011110 111 2468999999999999999999887653
No 200
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.59 E-value=1.4e-14 Score=128.98 Aligned_cols=111 Identities=17% Similarity=0.139 Sum_probs=66.4
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~ 245 (426)
..+.||||||...+. .+...+ ...+|++++|+|.....+-.. ....+.........++|+++|.||+|+..
T Consensus 49 ~~l~i~D~~g~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~sf~~-~~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 49 VRIQIWDTAGQERYQ-------TITKQY-YRRAQGIFLVYDISSERSYQH-IMKWVSDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred EEEEEEeCCCcHhHH-------hhHHHH-hcCCcEEEEEEECCCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 578899999986642 111111 135799999999865322111 11111111112234689999999999875
Q ss_pred hHhHH-HHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354 246 HEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (426)
Q Consensus 246 ~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~ 311 (426)
...+. .....+ ...+ ..+++++||++|.|+.++|.+|.+.
T Consensus 120 ~~~v~~~~~~~~-------------------------~~~~-~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 120 KRQVGDEQGNKL-------------------------AKEY-GMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ccCCCHHHHHHH-------------------------HHHc-CCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 43211 111111 0111 2578999999999999999998753
No 201
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.59 E-value=1.2e-14 Score=148.74 Aligned_cols=108 Identities=19% Similarity=0.292 Sum_probs=68.1
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccC-CeEEEEecCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRL-PLVLAFNKTD 242 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~-P~IlVlNKiD 242 (426)
++.++.||||||+.++. ..+... ...+|++++|||+..+..+++.. .+.++...+. ++|+|+||+|
T Consensus 78 ~~~~~~liDtPGh~~f~------~~~~~~--~~~aD~allVVda~~G~~~qt~~-----~~~~~~~~~~~~iivviNK~D 144 (406)
T TIGR02034 78 DKRKFIVADTPGHEQYT------RNMATG--ASTADLAVLLVDARKGVLEQTRR-----HSYIASLLGIRHVVLAVNKMD 144 (406)
T ss_pred CCeEEEEEeCCCHHHHH------HHHHHH--HhhCCEEEEEEECCCCCccccHH-----HHHHHHHcCCCcEEEEEEecc
Confidence 45689999999987652 122222 24579999999999988776532 2333444445 4788999999
Q ss_pred CCChH--hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 243 VAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 243 l~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
+.... ....+...+..+... + .+...++|++||++|.|+..+
T Consensus 145 ~~~~~~~~~~~i~~~~~~~~~~--------------~------~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 145 LVDYDEEVFENIKKDYLAFAEQ--------------L------GFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred cccchHHHHHHHHHHHHHHHHH--------------c------CCCCccEEEeecccCCCCccc
Confidence 98532 112222222222111 0 123467999999999999864
No 202
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.59 E-value=1.8e-14 Score=130.80 Aligned_cols=169 Identities=17% Similarity=0.133 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|+++|.+|+|||||+.+++...+....... +.. .+.. .+..
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~T-------i~~-~~~~-----------------------~~~~------ 44 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT-------VFD-NFSA-----------------------NVSV------ 44 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCc-------cee-eeEE-----------------------EEEE------
Confidence 46999999999999999999987654322111 100 0000 0000
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY- 228 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~- 228 (426)
....+.+.||||+|+.++.. +...+ -..++++|+|.|.....+- ......+...+.
T Consensus 45 ------------~~~~v~l~i~Dt~G~~~~~~-------~~~~~-~~~a~~~ilvyd~~~~~Sf---~~~~~~w~~~i~~ 101 (176)
T cd04133 45 ------------DGNTVNLGLWDTAGQEDYNR-------LRPLS-YRGADVFVLAFSLISRASY---ENVLKKWVPELRH 101 (176)
T ss_pred ------------CCEEEEEEEEECCCCccccc-------cchhh-cCCCcEEEEEEEcCCHHHH---HHHHHHHHHHHHH
Confidence 01336889999999987631 11111 1346899999998654332 111011122222
Q ss_pred -hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 229 -KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 229 -~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
..++|+|||.||+|+...... ..... ....+..+.+..+...++...++.+||++|.||+++|+.
T Consensus 102 ~~~~~piilvgnK~Dl~~~~~~--~~~~~------------~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~ 167 (176)
T cd04133 102 YAPNVPIVLVGTKLDLRDDKQY--LADHP------------GASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDA 167 (176)
T ss_pred hCCCCCEEEEEeChhhccChhh--hhhcc------------CCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHH
Confidence 247899999999999653210 00000 000000111111111122235899999999999999999
Q ss_pred HHHHH
Q 014354 308 VEESA 312 (426)
Q Consensus 308 l~~~~ 312 (426)
+.+.+
T Consensus 168 ~~~~~ 172 (176)
T cd04133 168 AIKVV 172 (176)
T ss_pred HHHHH
Confidence 98764
No 203
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.59 E-value=7.8e-15 Score=156.16 Aligned_cols=112 Identities=17% Similarity=0.260 Sum_probs=74.5
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~ 245 (426)
+.+.||||||+.++. ..+...+ ..+|++|+|+|+..+...++.. .+..+...++|.|+|+||+|+..
T Consensus 70 ~~l~liDTPG~~dF~------~~v~~~l--~~aD~aILVvDat~g~~~qt~~-----~~~~~~~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 70 YVLNLIDTPGHVDFS------YEVSRSL--AACEGALLLVDAAQGIEAQTLA-----NVYLALENDLEIIPVINKIDLPS 136 (595)
T ss_pred EEEEEEECCCcHHHH------HHHHHHH--HhCCEEEEEecCCCCCCHhHHH-----HHHHHHHcCCCEEEEEECcCCCc
Confidence 678999999998862 1222223 3479999999999887665532 12223346889999999999865
Q ss_pred hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
... ......+.... + ..+..++++||++|.|+.+|+++|.+.+|.
T Consensus 137 ~~~-~~~~~el~~~l-----------------g------~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 137 ADP-ERVKKEIEEVI-----------------G------LDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred cCH-HHHHHHHHHHh-----------------C------CCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 321 11212221100 0 112358999999999999999999887764
No 204
>PRK00049 elongation factor Tu; Reviewed
Probab=99.58 E-value=1.9e-14 Score=146.64 Aligned_cols=116 Identities=18% Similarity=0.228 Sum_probs=72.6
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeE-EEEecCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLV-LAFNKTD 242 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~I-lVlNKiD 242 (426)
++.++.|+||||+.++. ..+.. ....+|++++|||+..+...++ ..++.++...++|.+ +++||+|
T Consensus 73 ~~~~i~~iDtPG~~~f~------~~~~~--~~~~aD~~llVVDa~~g~~~qt-----~~~~~~~~~~g~p~iiVvvNK~D 139 (396)
T PRK00049 73 EKRHYAHVDCPGHADYV------KNMIT--GAAQMDGAILVVSAADGPMPQT-----REHILLARQVGVPYIVVFLNKCD 139 (396)
T ss_pred CCeEEEEEECCCHHHHH------HHHHh--hhccCCEEEEEEECCCCCchHH-----HHHHHHHHHcCCCEEEEEEeecC
Confidence 45689999999985431 11111 1245899999999998877655 334455667789986 5899999
Q ss_pred CCChHhHHH-HHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCC----------CHHHHHHHHHH
Q 014354 243 VAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGA----------GIEAYFKAVEE 310 (426)
Q Consensus 243 l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~----------gv~~l~~~l~~ 310 (426)
+.......+ +...+..+... + .+ ..+++++++||++|. |+..|+++|..
T Consensus 140 ~~~~~~~~~~~~~~i~~~l~~--------------~-----~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~ 200 (396)
T PRK00049 140 MVDDEELLELVEMEVRELLSK--------------Y-----DFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDS 200 (396)
T ss_pred CcchHHHHHHHHHHHHHHHHh--------------c-----CCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHh
Confidence 986443221 22233222211 0 11 135789999999985 44555555555
Q ss_pred H
Q 014354 311 S 311 (426)
Q Consensus 311 ~ 311 (426)
.
T Consensus 201 ~ 201 (396)
T PRK00049 201 Y 201 (396)
T ss_pred c
Confidence 4
No 205
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.58 E-value=4e-14 Score=133.90 Aligned_cols=175 Identities=15% Similarity=0.131 Sum_probs=96.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
...+|+++|.+|||||+|++++++..+.......+ . ..+...+ ..
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi-------~-~~~~~~i-----------------------~~---- 56 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-------F-ENYTAGL-----------------------ET---- 56 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCce-------e-eeeEEEE-----------------------EE----
Confidence 34689999999999999999999876543221111 0 0000000 00
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
......+.||||||+..+. .+...+ -..++++|+|.|.+...+ |......+...+
T Consensus 57 --------------~~~~v~l~iwDTaG~e~~~-------~~~~~~-~~~ad~vIlVyDit~~~S---f~~~~~~w~~~i 111 (232)
T cd04174 57 --------------EEQRVELSLWDTSGSPYYD-------NVRPLC-YSDSDAVLLCFDISRPET---VDSALKKWKAEI 111 (232)
T ss_pred --------------CCEEEEEEEEeCCCchhhH-------HHHHHH-cCCCcEEEEEEECCChHH---HHHHHHHHHHHH
Confidence 0234688999999987652 122211 135799999999975432 221111111222
Q ss_pred h--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC-CHHHH
Q 014354 228 Y--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA-GIEAY 304 (426)
Q Consensus 228 ~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~-gv~~l 304 (426)
. ..+.|+|||+||+|+...... ... + ... . ...+....+..+....+...++.+||++|. ||.++
T Consensus 112 ~~~~~~~piilVgNK~DL~~~~~~--~~~-l---~~~---~---~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~ 179 (232)
T cd04174 112 MDYCPSTRILLIGCKTDLRTDLST--LME-L---SNQ---K---QAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSI 179 (232)
T ss_pred HHhCCCCCEEEEEECcccccccch--hhh-h---ccc---c---CCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHH
Confidence 2 236899999999998642110 000 0 000 0 000011111111122222358999999998 89999
Q ss_pred HHHHHHHHHH
Q 014354 305 FKAVEESAQE 314 (426)
Q Consensus 305 ~~~l~~~~~~ 314 (426)
|..+......
T Consensus 180 F~~~~~~~~~ 189 (232)
T cd04174 180 FRSASLLCLN 189 (232)
T ss_pred HHHHHHHHHH
Confidence 9998876543
No 206
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.58 E-value=1.6e-14 Score=135.71 Aligned_cols=171 Identities=18% Similarity=0.160 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|+|+|.+|||||||++++++..+..... |.+.. .+.. .+..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~-------pTi~~-~~~~-----------------------~~~~------ 44 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYV-------PTVFE-NYTA-----------------------SFEI------ 44 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccC-------Ccccc-ceEE-----------------------EEEE------
Confidence 479999999999999999999876543221 11100 0000 0000
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH--
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL-- 227 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l-- 227 (426)
....+.+.||||+|+..+. .+... .-..+|++|+|+|.....+ |......+...+
T Consensus 45 ------------~~~~v~L~iwDt~G~e~~~-------~l~~~-~~~~~d~illvfdis~~~S---f~~i~~~w~~~~~~ 101 (222)
T cd04173 45 ------------DKRRIELNMWDTSGSSYYD-------NVRPL-AYPDSDAVLICFDISRPET---LDSVLKKWQGETQE 101 (222)
T ss_pred ------------CCEEEEEEEEeCCCcHHHH-------HHhHH-hccCCCEEEEEEECCCHHH---HHHHHHHHHHHHHh
Confidence 0233678899999997652 11111 1245799999999875422 211111111111
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC-HHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-IEAYFK 306 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g-v~~l~~ 306 (426)
...+.|+|||+||+|+...... ...+ ... ....+....+..+....+..+++.+||+++.+ |.++|.
T Consensus 102 ~~~~~piiLVgnK~DL~~~~~~---~~~~---~~~------~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~ 169 (222)
T cd04173 102 FCPNAKVVLVGCKLDMRTDLAT---LREL---SKQ------RLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFH 169 (222)
T ss_pred hCCCCCEEEEEECcccccchhh---hhhh---hhc------cCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHH
Confidence 1347899999999999754211 0000 000 00011112222222333445799999999984 999999
Q ss_pred HHHHHH
Q 014354 307 AVEESA 312 (426)
Q Consensus 307 ~l~~~~ 312 (426)
.+....
T Consensus 170 ~~~~~~ 175 (222)
T cd04173 170 VATVAS 175 (222)
T ss_pred HHHHHH
Confidence 888764
No 207
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.58 E-value=1.8e-14 Score=134.65 Aligned_cols=67 Identities=25% Similarity=0.347 Sum_probs=46.0
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
.+.+.||||||+.++. ......+ ..+|++|+|+|+..+..... ..++..+...++|+++|+||+|++
T Consensus 70 ~~~i~iiDtpG~~~f~------~~~~~~~--~~aD~~llVvD~~~~~~~~~-----~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 70 SYLFNIIDTPGHVNFM------DEVAAAL--RLSDGVVLVVDVVEGVTSNT-----ERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEEEEECCCCcchH------HHHHHHH--HhCCEEEEEEECCCCCCHHH-----HHHHHHHHHcCCCEEEEEECcccC
Confidence 4678999999998752 1122222 35799999999987765432 122333444569999999999987
No 208
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.58 E-value=1.9e-14 Score=142.01 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=45.2
Q ss_pred ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH-HH
Q 014354 230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK-AV 308 (426)
Q Consensus 230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~-~l 308 (426)
..+|+|+|+||+|+....... +.+. ..+.+..+|++||+.+.|+..|.+ .+
T Consensus 213 t~KPvI~VlNK~Dl~~~~~~~---~~l~-------------------------~~~~~~~iI~iSA~~e~~L~~L~~~~i 264 (318)
T cd01899 213 RSKPMVIAANKADIPDAENNI---SKLR-------------------------LKYPDEIVVPTSAEAELALRRAAKQGL 264 (318)
T ss_pred cCCcEEEEEEHHHccChHHHH---HHHH-------------------------hhCCCCeEEEEeCcccccHHHHHHhhH
Confidence 457999999999986554321 1111 112356799999999999999998 69
Q ss_pred HHHHHHHHhh
Q 014354 309 EESAQEFMET 318 (426)
Q Consensus 309 ~~~~~~~~~~ 318 (426)
.+++|+.+++
T Consensus 265 ~~~lPe~~~f 274 (318)
T cd01899 265 IKYDPGDSDF 274 (318)
T ss_pred HHhCCCCCCc
Confidence 9999987655
No 209
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.57 E-value=3.4e-14 Score=130.45 Aligned_cols=162 Identities=17% Similarity=0.150 Sum_probs=96.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
...+|+++|..|||||||+.++....+.... +.+..++.... .+...
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~--------------~~t~~~~~~~~----------------~i~~~--- 51 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPY--------------GYNMGIDYKTT----------------TILLD--- 51 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC--------------CCcceeEEEEE----------------EEEEC---
Confidence 4578999999999999999999976543211 00100000000 00000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
.....+.||||||+.++. .+...+ ...+|++|+|+|.+...+-.. . ..++..+
T Consensus 52 ---------------~~~~~l~iwDt~G~~~~~-------~l~~~~-~~~ad~illVfD~t~~~Sf~~---~-~~w~~~i 104 (189)
T cd04121 52 ---------------GRRVKLQLWDTSGQGRFC-------TIFRSY-SRGAQGIILVYDITNRWSFDG---I-DRWIKEI 104 (189)
T ss_pred ---------------CEEEEEEEEeCCCcHHHH-------HHHHHH-hcCCCEEEEEEECcCHHHHHH---H-HHHHHHH
Confidence 123678999999997752 222222 135799999999875433211 1 1111222
Q ss_pred h--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 228 Y--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 228 ~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
. ..+.|+|||.||+|+.....+. ..+.+.+. .. ...+++.+||++|.||.++|
T Consensus 105 ~~~~~~~piilVGNK~DL~~~~~v~--~~~~~~~a----------------------~~-~~~~~~e~SAk~g~~V~~~F 159 (189)
T cd04121 105 DEHAPGVPKILVGNRLHLAFKRQVA--TEQAQAYA----------------------ER-NGMTFFEVSPLCNFNITESF 159 (189)
T ss_pred HHhCCCCCEEEEEECccchhccCCC--HHHHHHHH----------------------HH-cCCEEEEecCCCCCCHHHHH
Confidence 2 2478999999999996532210 11111111 11 13579999999999999999
Q ss_pred HHHHHHHHH
Q 014354 306 KAVEESAQE 314 (426)
Q Consensus 306 ~~l~~~~~~ 314 (426)
.+|.+.+..
T Consensus 160 ~~l~~~i~~ 168 (189)
T cd04121 160 TELARIVLM 168 (189)
T ss_pred HHHHHHHHH
Confidence 999886654
No 210
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.57 E-value=2.1e-14 Score=153.00 Aligned_cols=113 Identities=21% Similarity=0.274 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
++.+.||||||+.++. ..+...+ ..+|.+|+|||+..+...+++. .+..+...++|.|+|+||+|+.
T Consensus 73 ~~~lnLiDTPGh~dF~------~~v~~sl--~~aD~aILVVDas~gv~~qt~~-----~~~~~~~~~lpiIvViNKiDl~ 139 (600)
T PRK05433 73 TYILNLIDTPGHVDFS------YEVSRSL--AACEGALLVVDASQGVEAQTLA-----NVYLALENDLEIIPVLNKIDLP 139 (600)
T ss_pred cEEEEEEECCCcHHHH------HHHHHHH--HHCCEEEEEEECCCCCCHHHHH-----HHHHHHHCCCCEEEEEECCCCC
Confidence 4688999999998862 1222233 2469999999999887765532 2223445689999999999986
Q ss_pred ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
.... ......+.... + .....++++||++|.|+.+|+++|...+|.
T Consensus 140 ~a~~-~~v~~ei~~~l-----------------g------~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 140 AADP-ERVKQEIEDVI-----------------G------IDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred cccH-HHHHHHHHHHh-----------------C------CCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 5321 11222221100 0 112358999999999999999999988765
No 211
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.57 E-value=3.1e-14 Score=145.22 Aligned_cols=105 Identities=16% Similarity=0.188 Sum_probs=65.6
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeE-EEEecCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLV-LAFNKTD 242 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~I-lVlNKiD 242 (426)
++.++.||||||+.++. ..+.. ....+|++++|||+..+...+++ ..+..+...++|.+ +|+||+|
T Consensus 73 ~~~~~~liDtpGh~~f~------~~~~~--~~~~~D~~ilVvda~~g~~~qt~-----e~l~~~~~~gi~~iIvvvNK~D 139 (394)
T TIGR00485 73 ENRHYAHVDCPGHADYV------KNMIT--GAAQMDGAILVVSATDGPMPQTR-----EHILLARQVGVPYIVVFLNKCD 139 (394)
T ss_pred CCEEEEEEECCchHHHH------HHHHH--HHhhCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCEEEEEEEecc
Confidence 34679999999997642 11211 12457999999999988776653 34444566788876 5899999
Q ss_pred CCChHhHHH-HHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC
Q 014354 243 VAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA 299 (426)
Q Consensus 243 l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~ 299 (426)
+.......+ +...++.+... .+. ...+.+++++||++|.
T Consensus 140 l~~~~~~~~~~~~~i~~~l~~--------------~~~----~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 140 MVDDEELLELVEMEVRELLSE--------------YDF----PGDDTPIIRGSALKAL 179 (394)
T ss_pred cCCHHHHHHHHHHHHHHHHHh--------------cCC----CccCccEEECcccccc
Confidence 987543222 22233322211 000 0123789999999985
No 212
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.57 E-value=3.4e-14 Score=145.40 Aligned_cols=114 Identities=22% Similarity=0.283 Sum_probs=73.5
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCC-CchhhhhhHHHHHHHHhhccC-CeEEEEecCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTRL-PLVLAFNKTD 242 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~-~~~~~~~~~l~~~~~l~~~~~-P~IlVlNKiD 242 (426)
..+.||||||+.++. ..++.. ..+|++++|+|+..+. ..++.. .+..+...+. |.|+|+||+|
T Consensus 85 ~~i~liDtPG~~~f~---------~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-----~l~~l~~~~i~~iiVVlNK~D 150 (411)
T PRK04000 85 RRVSFVDAPGHETLM---------ATMLSGAALMDGAILVIAANEPCPQPQTKE-----HLMALDIIGIKNIVIVQNKID 150 (411)
T ss_pred cEEEEEECCCHHHHH---------HHHHHHHhhCCEEEEEEECCCCCCChhHHH-----HHHHHHHcCCCcEEEEEEeec
Confidence 578999999986541 122222 3479999999999875 444321 2223344454 6899999999
Q ss_pred CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (426)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~ 313 (426)
+.+..........+..+... .+....+++++||++|.|+..|+++|...++
T Consensus 151 l~~~~~~~~~~~~i~~~l~~--------------------~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 151 LVSKERALENYEQIKEFVKG--------------------TVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred cccchhHHHHHHHHHHHhcc--------------------ccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 98754332222222211110 0123468999999999999999999987654
No 213
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.56 E-value=1.5e-14 Score=123.98 Aligned_cols=113 Identities=16% Similarity=0.118 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
..++.+|||||+....... ......++++++|+|+.......................+.|+++|+||+|+.
T Consensus 44 ~~~~~l~D~~g~~~~~~~~--------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~ 115 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLR--------RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLP 115 (157)
T ss_pred EEEEEEEecCChHHHHhHH--------HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc
Confidence 4688999999987642111 11224579999999998654332221110112233456789999999999998
Q ss_pred ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE 309 (426)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~ 309 (426)
......... ....+ ......+++++|+..|.|+.+++++|.
T Consensus 116 ~~~~~~~~~-~~~~~-----------------------~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 116 EERVVSEEE-LAEQL-----------------------AKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred cccchHHHH-HHHHH-----------------------HhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 765332211 00000 113457899999999999999999875
No 214
>PLN03108 Rab family protein; Provisional
Probab=99.56 E-value=7.3e-14 Score=130.25 Aligned_cols=165 Identities=18% Similarity=0.189 Sum_probs=94.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
...+|+|+|++|||||||+++|++..+..... |.+.. .+.. +.+..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~-------~ti~~-~~~~-----------------------~~i~~--- 50 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-------LTIGV-EFGA-----------------------RMITI--- 50 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCC-------CCccc-eEEE-----------------------EEEEE---
Confidence 34789999999999999999999876432110 10000 0000 00000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
......+.+|||||+..+. .+...+ ...+|++|+|+|+....+... ....+......
T Consensus 51 --------------~~~~i~l~l~Dt~G~~~~~-------~~~~~~-~~~ad~~vlv~D~~~~~s~~~-l~~~~~~~~~~ 107 (210)
T PLN03108 51 --------------DNKPIKLQIWDTAGQESFR-------SITRSY-YRGAAGALLVYDITRRETFNH-LASWLEDARQH 107 (210)
T ss_pred --------------CCEEEEEEEEeCCCcHHHH-------HHHHHH-hccCCEEEEEEECCcHHHHHH-HHHHHHHHHHh
Confidence 0122467899999986641 111111 124789999999965332111 10111111111
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
....+|+++|+||+|+....... ......+.. . ...+++++||++|.|+.++|.+
T Consensus 108 ~~~~~piiiv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 108 ANANMTIMLIGNKCDLAHRRAVS--TEEGEQFAK---------------------E--HGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred cCCCCcEEEEEECccCccccCCC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHHHH
Confidence 23478999999999987542110 011111100 1 1357999999999999999999
Q ss_pred HHHHHHH
Q 014354 308 VEESAQE 314 (426)
Q Consensus 308 l~~~~~~ 314 (426)
+.+.+..
T Consensus 163 l~~~~~~ 169 (210)
T PLN03108 163 TAAKIYK 169 (210)
T ss_pred HHHHHHH
Confidence 8876643
No 215
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.55 E-value=4.6e-14 Score=150.07 Aligned_cols=122 Identities=17% Similarity=0.180 Sum_probs=79.9
Q ss_pred hcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCC
Q 014354 163 ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (426)
Q Consensus 163 ~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiD 242 (426)
++++.+.||||||+.++. ..+...+ ..+|.+++|||+..+...++ ..++..+...++|.|+|+||+|
T Consensus 61 ~~~~kinlIDTPGh~DF~------~ev~~~l--~~aD~alLVVDa~~G~~~qT-----~~~l~~a~~~~ip~IVviNKiD 127 (594)
T TIGR01394 61 YNGTKINIVDTPGHADFG------GEVERVL--GMVDGVLLLVDASEGPMPQT-----RFVLKKALELGLKPIVVINKID 127 (594)
T ss_pred ECCEEEEEEECCCHHHHH------HHHHHHH--HhCCEEEEEEeCCCCCcHHH-----HHHHHHHHHCCCCEEEEEECCC
Confidence 356889999999998762 1222222 34699999999998876554 3345566678899999999999
Q ss_pred CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC----------CHHHHHHHHHHHH
Q 014354 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA----------GIEAYFKAVEESA 312 (426)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~----------gv~~l~~~l~~~~ 312 (426)
+..... ..+...+..+...+ +.. .-....+++++||++|. |+..|++.|...+
T Consensus 128 ~~~a~~-~~v~~ei~~l~~~~--------------g~~--~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 128 RPSARP-DEVVDEVFDLFAEL--------------GAD--DEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred CCCcCH-HHHHHHHHHHHHhh--------------ccc--cccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 865321 12222222221110 000 00013579999999996 7999999998877
Q ss_pred HH
Q 014354 313 QE 314 (426)
Q Consensus 313 ~~ 314 (426)
|.
T Consensus 191 P~ 192 (594)
T TIGR01394 191 PA 192 (594)
T ss_pred CC
Confidence 64
No 216
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.55 E-value=2.8e-14 Score=130.37 Aligned_cols=122 Identities=19% Similarity=0.154 Sum_probs=66.4
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDV 243 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKiDl 243 (426)
..+.+|||||+..+..... .....++++++|.|.....+...... .+...+. ..++|+|||+||+|+
T Consensus 49 ~~l~i~Dt~g~~~~~~~~~--------~~~~~a~~~llv~~i~~~~s~~~~~~---~~~~~i~~~~~~~piilvgnK~Dl 117 (187)
T cd04129 49 VQLALWDTAGQEEYERLRP--------LSYSKAHVILIGFAVDTPDSLENVRT---KWIEEVRRYCPNVPVILVGLKKDL 117 (187)
T ss_pred EEEEEEECCCChhccccch--------hhcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEeeChhh
Confidence 4678999999876521111 11144688888887754322111110 1122222 236999999999998
Q ss_pred CChHhHHHHH--HHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 244 AQHEFALEWM--QDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 244 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
.......... .... ....+..+...++..+++++||++|.|+++++.++.+.+.-
T Consensus 118 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 118 RQDAVAKEEYRTQRFV----------------PIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred hhCcccccccccCCcC----------------CHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhc
Confidence 5421100000 0000 00000011111233579999999999999999999876543
No 217
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.55 E-value=2.6e-14 Score=129.53 Aligned_cols=157 Identities=22% Similarity=0.358 Sum_probs=96.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
++..+|+++|+.|||||||+++|....... ..| |..+.+ .+..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~--------------~~p-T~g~~~----------------------~~i~ 54 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE--------------TIP-TIGFNI----------------------EEIK 54 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE--------------EEE-ESSEEE----------------------EEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc--------------cCc-cccccc----------------------ceee
Confidence 466789999999999999999998654221 011 111100 0000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccc-hhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT-WSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~-~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
..+..+.+||.+|...... |... + ..++.+|||||+.... .+.........
T Consensus 55 ----------------~~~~~~~~~d~gG~~~~~~~w~~y-------~--~~~~~iIfVvDssd~~---~l~e~~~~L~~ 106 (175)
T PF00025_consen 55 ----------------YKGYSLTIWDLGGQESFRPLWKSY-------F--QNADGIIFVVDSSDPE---RLQEAKEELKE 106 (175)
T ss_dssp ----------------ETTEEEEEEEESSSGGGGGGGGGG-------H--TTESEEEEEEETTGGG---GHHHHHHHHHH
T ss_pred ----------------eCcEEEEEEeccccccccccceee-------c--cccceeEEEEecccce---eecccccchhh
Confidence 2447899999999866421 2111 1 2468999999997532 22222222222
Q ss_pred HHh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh--hcCCceEEeecccCCC
Q 014354 226 ILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAG 300 (426)
Q Consensus 226 ~l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~vv~vSA~~g~g 300 (426)
++. ..++|++|++||.|+...-...++...+. +... .....++.+||.+|.|
T Consensus 107 ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~-----------------------l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 107 LLNDPELKDIPILILANKQDLPDAMSEEEIKEYLG-----------------------LEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp HHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTT-----------------------GGGTTSSSCEEEEEEBTTTTBT
T ss_pred hcchhhcccceEEEEeccccccCcchhhHHHhhhh-----------------------hhhcccCCceEEEeeeccCCcC
Confidence 232 34799999999999887543322322211 0011 1235699999999999
Q ss_pred HHHHHHHHHHH
Q 014354 301 IEAYFKAVEES 311 (426)
Q Consensus 301 v~~l~~~l~~~ 311 (426)
+.+.++||.+.
T Consensus 164 v~e~l~WL~~~ 174 (175)
T PF00025_consen 164 VDEGLEWLIEQ 174 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999864
No 218
>PRK12739 elongation factor G; Reviewed
Probab=99.55 E-value=7.3e-14 Score=151.87 Aligned_cols=135 Identities=19% Similarity=0.174 Sum_probs=81.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+...|+|+|++|+|||||+++|+.........+.+.+ .++..|.... -...|+.......+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~---------~~~~~D~~~~------E~~rgiti~~~~~~--- 67 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHD---------GAATMDWMEQ------EQERGITITSAATT--- 67 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccC---------CccccCCChh------HhhcCCCccceeEE---
Confidence 35678999999999999999999875432211100100 0111110000 00111111111100
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
+ ..++.++.||||||+.++. ..+...+ ..+|++|+|||+..+...++ ..++..
T Consensus 68 -----~---------~~~~~~i~liDTPG~~~f~------~e~~~al--~~~D~~ilVvDa~~g~~~qt-----~~i~~~ 120 (691)
T PRK12739 68 -----C---------FWKGHRINIIDTPGHVDFT------IEVERSL--RVLDGAVAVFDAVSGVEPQS-----ETVWRQ 120 (691)
T ss_pred -----E---------EECCEEEEEEcCCCHHHHH------HHHHHHH--HHhCeEEEEEeCCCCCCHHH-----HHHHHH
Confidence 0 1356899999999997642 1222222 34699999999999887665 345556
Q ss_pred HhhccCCeEEEEecCCCCCh
Q 014354 227 LYKTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~ 246 (426)
+...++|.|+++||+|+...
T Consensus 121 ~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 121 ADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHcCCCEEEEEECCCCCCC
Confidence 66788999999999999864
No 219
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.54 E-value=9.8e-15 Score=141.22 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=68.0
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl 243 (426)
.+.++.||||||+.++. ..+...+ ..+|++++|+|+..+..... ...+..+...++|.++|+||+|+
T Consensus 62 ~~~~i~liDtPG~~~f~------~~~~~~l--~~aD~~i~Vvd~~~g~~~~~-----~~~~~~~~~~~~p~iivvNK~D~ 128 (268)
T cd04170 62 KGHKINLIDTPGYADFV------GETRAAL--RAADAALVVVSAQSGVEVGT-----EKLWEFADEAGIPRIIFINKMDR 128 (268)
T ss_pred CCEEEEEEECcCHHHHH------HHHHHHH--HHCCEEEEEEeCCCCCCHHH-----HHHHHHHHHcCCCEEEEEECCcc
Confidence 45789999999997641 1222222 34799999999988765543 22334456678999999999998
Q ss_pred CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (426)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~ 311 (426)
.... .......++ .. +....-.+.++..+|.|+..+.+.+...
T Consensus 129 ~~~~-~~~~~~~l~---~~---------------------~~~~~~~~~ip~~~~~~~~~~vd~~~~~ 171 (268)
T cd04170 129 ERAD-FDKTLAALQ---EA---------------------FGRPVVPLQLPIGEGDDFKGVVDLLTEK 171 (268)
T ss_pred CCCC-HHHHHHHHH---HH---------------------hCCCeEEEEecccCCCceeEEEEcccCE
Confidence 8653 112222222 11 1112223455677888887777666543
No 220
>PLN03126 Elongation factor Tu; Provisional
Probab=99.54 E-value=5.5e-14 Score=145.86 Aligned_cols=106 Identities=19% Similarity=0.222 Sum_probs=68.4
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC-eEEEEecCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTD 242 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P-~IlVlNKiD 242 (426)
++..+.||||||+.++. ..+...+ ..+|++++|||+..+...++ ..++..+...++| .|+++||+|
T Consensus 142 ~~~~i~liDtPGh~~f~------~~~~~g~--~~aD~ailVVda~~G~~~qt-----~e~~~~~~~~gi~~iIvvvNK~D 208 (478)
T PLN03126 142 ENRHYAHVDCPGHADYV------KNMITGA--AQMDGAILVVSGADGPMPQT-----KEHILLAKQVGVPNMVVFLNKQD 208 (478)
T ss_pred CCcEEEEEECCCHHHHH------HHHHHHH--hhCCEEEEEEECCCCCcHHH-----HHHHHHHHHcCCCeEEEEEeccc
Confidence 45689999999997752 2222222 35799999999999887765 3344556677899 677899999
Q ss_pred CCChHhHHH-HHHHHHHHHHHhccccchhhhHHHHhhhhHhhhh-cCCceEEeecccCCCH
Q 014354 243 VAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGI 301 (426)
Q Consensus 243 l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~vv~vSA~~g~gv 301 (426)
++..+...+ +...+..++.. . .|. ..++++++||.+|.++
T Consensus 209 l~~~~~~~~~i~~~i~~~l~~--------------~-----g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 209 QVDDEELLELVELEVRELLSS--------------Y-----EFPGDDIPIISGSALLALEA 250 (478)
T ss_pred ccCHHHHHHHHHHHHHHHHHh--------------c-----CCCcCcceEEEEEccccccc
Confidence 987543322 22233322211 0 011 3578999999998643
No 221
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=99.54 E-value=5.3e-14 Score=140.34 Aligned_cols=174 Identities=20% Similarity=0.159 Sum_probs=105.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHH----HHHcCCCCCCCccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEV----MKQFNLGPNGGILT 143 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~----~~~~~l~~ng~i~~ 143 (426)
+.++++|.|+.|||||||||+++.. ..+.+++|+.++.+-. +|| ...+.-... ...+--..|||+||
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G~~------~ID-~~ll~~~~~~~~~~~~v~el~nGCiCC 73 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFGDL------GID-GEILKACGIEGCSEENIVELANGCICC 73 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCccc------cch-HHHHhccccccCCcceEEEeCCCCccc
Confidence 4578999999999999999999975 3466777777665422 222 000000000 00122236899999
Q ss_pred ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh------cCCcEEEEEEeCCCCCCchh--
Q 014354 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS------TFPTVVTYVVDTPRSANPMT-- 215 (426)
Q Consensus 144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~------~~~d~vl~VVDa~~~~~~~~-- 215 (426)
+++ .+....+..++. ....+++++|+|+|+.++ ..+.+.+.. ...+.+|.|||+.+......
T Consensus 74 s~~--~dl~~~l~~l~~-~~~~~d~IvIEtsG~a~P-------~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~ 143 (341)
T TIGR02475 74 TVA--DDFIPTMTKLLA-RRQRPDHILIETSGLALP-------KPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAA 143 (341)
T ss_pred cCc--HHHHHHHHHHHh-ccCCCCEEEEeCCCCCCH-------HHHHHHhcCccccceEEeeeEEEEEECchhhhhcccc
Confidence 854 333333333332 235689999999999987 234444421 23578999999976532100
Q ss_pred ---h----h------hhHHHHH-HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHH
Q 014354 216 ---F----M------SNMLYAC-SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQ 260 (426)
Q Consensus 216 ---~----~------~~~l~~~-~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~ 260 (426)
. + ....... -...|.....+||+||+|+++.+.+..+...++.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~~~l~~~~~~l~~~~ 202 (341)
T TIGR02475 144 DPDALDAQRAADDNLDHETPLEELFEDQLACADLVILNKADLLDAAGLARVRAEIAAEL 202 (341)
T ss_pred chhhhhhhccccccccccchHHHHHHHHHHhCCEEEEeccccCCHHHHHHHHHHHHHhC
Confidence 0 0 0000001 113577889999999999999887766666665433
No 222
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.54 E-value=4.1e-14 Score=131.00 Aligned_cols=111 Identities=19% Similarity=0.189 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh--ccCCeEEEEecCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTD 242 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~--~~~P~IlVlNKiD 242 (426)
...+.||||||+.++. .+...+ -..++++|+|+|.....+.... ..+...+.+ .++|+|||+||+|
T Consensus 43 ~~~l~iwDt~G~e~~~-------~l~~~~-~~~ad~~ilV~D~t~~~S~~~i----~~w~~~i~~~~~~~piilvgNK~D 110 (200)
T smart00176 43 PIRFNVWDTAGQEKFG-------GLRDGY-YIQGQCAIIMFDVTARVTYKNV----PNWHRDLVRVCENIPIVLCGNKVD 110 (200)
T ss_pred EEEEEEEECCCchhhh-------hhhHHH-hcCCCEEEEEEECCChHHHHHH----HHHHHHHHHhCCCCCEEEEEECcc
Confidence 3688999999997752 222211 1346899999999765433211 111222222 4789999999999
Q ss_pred CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
+....... +... +. ......++++||++|.||.++|.+|...+..
T Consensus 111 l~~~~v~~---~~~~-~~-----------------------~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 111 VKDRKVKA---KSIT-FH-----------------------RKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred cccccCCH---HHHH-HH-----------------------HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 85422110 0000 00 0123579999999999999999999987654
No 223
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.6e-14 Score=146.12 Aligned_cols=180 Identities=16% Similarity=0.214 Sum_probs=116.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+...++||-+...|||||..+|+....... ..+.-+++|..+.+....||.....
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~------------------------~~~~q~q~LDkl~vERERGITIkaQ 113 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTID------------------------NNIGQEQVLDKLQVERERGITIKAQ 113 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCC------------------------CCCchhhhhhhhhhhhhcCcEEEee
Confidence 5677899999999999999999998763210 0011123344444444445432100
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
...+.+. .++.+-+.+||||||.+|.. .+.+.+ +-|+-+|+||||..|...++. ...-+
T Consensus 114 --tasify~------~~~~ylLNLIDTPGHvDFs~------EVsRsl--aac~G~lLvVDA~qGvqAQT~-----anf~l 172 (650)
T KOG0462|consen 114 --TASIFYK------DGQSYLLNLIDTPGHVDFSG------EVSRSL--AACDGALLVVDASQGVQAQTV-----ANFYL 172 (650)
T ss_pred --eeEEEEE------cCCceEEEeecCCCcccccc------eehehh--hhcCceEEEEEcCcCchHHHH-----HHHHH
Confidence 0000000 02336788999999999842 222222 347999999999999998872 23334
Q ss_pred HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
..+.++.+|.|+||||+...+- .+....+..+.. .+..+++.+||++|.|+..+++
T Consensus 173 Afe~~L~iIpVlNKIDlp~adp-e~V~~q~~~lF~-----------------------~~~~~~i~vSAK~G~~v~~lL~ 228 (650)
T KOG0462|consen 173 AFEAGLAIIPVLNKIDLPSADP-ERVENQLFELFD-----------------------IPPAEVIYVSAKTGLNVEELLE 228 (650)
T ss_pred HHHcCCeEEEeeeccCCCCCCH-HHHHHHHHHHhc-----------------------CCccceEEEEeccCccHHHHHH
Confidence 5577899999999999987531 122222221110 1346899999999999999999
Q ss_pred HHHHHHHHH
Q 014354 307 AVEESAQEF 315 (426)
Q Consensus 307 ~l~~~~~~~ 315 (426)
+|.++.|..
T Consensus 229 AII~rVPpP 237 (650)
T KOG0462|consen 229 AIIRRVPPP 237 (650)
T ss_pred HHHhhCCCC
Confidence 999998863
No 224
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=99.54 E-value=2.7e-14 Score=129.80 Aligned_cols=165 Identities=19% Similarity=0.223 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHc----CCCCCCCccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQF----NLGPNGGILTSL 145 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~----~l~~ng~i~~~~ 145 (426)
|+++|.|++||||||||++++. ....+.+++++.++.+-. ++| .+.++.. .-..+||+||++
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~------~iD-------~~~l~~~~~~v~~l~~gcicc~~ 66 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEV------NID-------AELLQEDGVPVVELNNGCICCTL 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTST------HHH-------HHHHHTTT-EEEEECTTTESS-T
T ss_pred CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEcccccc------ccc-------hhhhcccceEEEEecCCCccccc
Confidence 5789999999999999999998 556677787777665421 111 0111221 223479999973
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
+ ......+..+.......++++||++.|..++... ......+. ....+.+++|||+.+...... . . .
T Consensus 67 ~--~~~~~~l~~l~~~~~~~~d~IiIE~sG~a~p~~l----~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~-~---~--~ 134 (178)
T PF02492_consen 67 R--DDLVEALRRLLREYEERPDRIIIETSGLADPAPL----ILQDPPLKEDFRLDSIITVVDATNFDELEN-I---P--E 134 (178)
T ss_dssp T--S-HHHHHHHHCCCCHGC-SEEEEEEECSSGGGGH----HHHSHHHHHHESESEEEEEEEGTTHGGHTT-H---C--H
T ss_pred H--HHHHHHHHHHHHhcCCCcCEEEECCccccccchh----hhccccccccccccceeEEecccccccccc-c---h--h
Confidence 3 2222222222221112589999999999887433 10111122 234688999999976521111 1 1 1
Q ss_pred HHHhhccCCeEEEEecCCCCChHh-HHHHHHHHHHHH
Q 014354 225 SILYKTRLPLVLAFNKTDVAQHEF-ALEWMQDFEVFQ 260 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~~~~~-~~~~~~~~~~l~ 260 (426)
-...+.....+||+||+|+++.+. +..+.+.++.++
T Consensus 135 ~~~~Qi~~ADvIvlnK~D~~~~~~~i~~~~~~ir~ln 171 (178)
T PF02492_consen 135 LLREQIAFADVIVLNKIDLVSDEQKIERVREMIRELN 171 (178)
T ss_dssp HHHHHHCT-SEEEEE-GGGHHHH--HHHHHHHHHHH-
T ss_pred hhhhcchhcCEEEEeccccCChhhHHHHHHHHHHHHC
Confidence 124577889999999999998873 355555555444
No 225
>PRK00007 elongation factor G; Reviewed
Probab=99.53 E-value=9.6e-14 Score=150.92 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=53.8
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl 243 (426)
++.++.|+||||+.++. ..+...+ ..+|++|+|||+..+...++ ..++..+...++|.|+++||+|+
T Consensus 73 ~~~~~~liDTPG~~~f~------~ev~~al--~~~D~~vlVvda~~g~~~qt-----~~~~~~~~~~~~p~iv~vNK~D~ 139 (693)
T PRK00007 73 KDHRINIIDTPGHVDFT------IEVERSL--RVLDGAVAVFDAVGGVEPQS-----ETVWRQADKYKVPRIAFVNKMDR 139 (693)
T ss_pred CCeEEEEEeCCCcHHHH------HHHHHHH--HHcCEEEEEEECCCCcchhh-----HHHHHHHHHcCCCEEEEEECCCC
Confidence 46899999999997642 1122222 34699999999999987766 34556677889999999999999
Q ss_pred CChH
Q 014354 244 AQHE 247 (426)
Q Consensus 244 ~~~~ 247 (426)
....
T Consensus 140 ~~~~ 143 (693)
T PRK00007 140 TGAD 143 (693)
T ss_pred CCCC
Confidence 8643
No 226
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.53 E-value=1e-13 Score=150.74 Aligned_cols=136 Identities=20% Similarity=0.186 Sum_probs=81.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+.+.|+|+|++|+|||||+|+|+...........+. ++++..|.... -.. .|+.....
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~---------~g~~~~D~~~~------e~~------rgiti~~~ 66 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVH---------DGAATMDWMEQ------EKE------RGITITSA 66 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCcccccccc---------CCccccCCCHH------HHh------cCCCEecc
Confidence 3567899999999999999999987543321111110 11111110000 001 12211100
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
...+ ..++.++.||||||+.++. ..+...+ ..+|++|+|||+..+...++ ..++..
T Consensus 67 --~~~~---------~~~~~~i~liDTPG~~~~~------~~~~~~l--~~~D~~ilVvda~~g~~~~~-----~~~~~~ 122 (689)
T TIGR00484 67 --ATTV---------FWKGHRINIIDTPGHVDFT------VEVERSL--RVLDGAVAVLDAVGGVQPQS-----ETVWRQ 122 (689)
T ss_pred --eEEE---------EECCeEEEEEECCCCcchh------HHHHHHH--HHhCEEEEEEeCCCCCChhH-----HHHHHH
Confidence 0011 1356899999999998752 1122222 34699999999998876654 234455
Q ss_pred HhhccCCeEEEEecCCCCChH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHE 247 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~ 247 (426)
+...++|.++|+||+|+....
T Consensus 123 ~~~~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 123 ANRYEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred HHHcCCCEEEEEECCCCCCCC
Confidence 667789999999999998643
No 227
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.52 E-value=2.8e-14 Score=120.07 Aligned_cols=115 Identities=23% Similarity=0.395 Sum_probs=69.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
.|+|+|.+|||||||+|+|++..... ++..+++| +... .+.+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~------------~~~~~~~T----~~~~--------------~~~~~------- 43 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAK------------VSNIPGTT----RDPV--------------YGQFE------- 43 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSE------------ESSSTTSS----SSEE--------------EEEEE-------
T ss_pred CEEEECCCCCCHHHHHHHHhcccccc------------ccccccce----eeee--------------eeeee-------
Confidence 48999999999999999999864321 44444444 1100 00000
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~ 229 (426)
..+..+.|+||||+.+..........+...+.. ..+|+++||+|+...... ....+++.+.
T Consensus 44 ------------~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~-----~~~~~~~~l~- 105 (116)
T PF01926_consen 44 ------------YNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITE-----DDKNILRELK- 105 (116)
T ss_dssp ------------ETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHH-----HHHHHHHHHH-
T ss_pred ------------eceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCH-----HHHHHHHHHh-
Confidence 133577899999997753222211222222222 557999999997662221 1123334444
Q ss_pred ccCCeEEEEec
Q 014354 230 TRLPLVLAFNK 240 (426)
Q Consensus 230 ~~~P~IlVlNK 240 (426)
.+.|.++|+||
T Consensus 106 ~~~~~i~v~NK 116 (116)
T PF01926_consen 106 NKKPIILVLNK 116 (116)
T ss_dssp TTSEEEEEEES
T ss_pred cCCCEEEEEcC
Confidence 78999999998
No 228
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.52 E-value=9.6e-14 Score=123.65 Aligned_cols=108 Identities=14% Similarity=0.134 Sum_probs=63.4
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-hccCCeEEEEecCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-KTRLPLVLAFNKTDVA 244 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-~~~~P~IlVlNKiDl~ 244 (426)
..+.||||+|+... . .+ ..+|++++|.|.+..-+-.... ..+..+.... ..++|++||.||+|+.
T Consensus 47 ~~l~i~D~~g~~~~--------~---~~--~~~~~~ilv~d~~~~~sf~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 47 HLLLIRDEGGAPDA--------Q---FA--SWVDAVIFVFSLENEASFQTVY-NLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred EEEEEEECCCCCch--------h---HH--hcCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 56889999999542 1 11 3468999999987543322211 1111111111 1468999999999974
Q ss_pred C--hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354 245 Q--HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (426)
Q Consensus 245 ~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~ 311 (426)
. .+.+. ......+ + ......+++++||++|.||+++|..+.+.
T Consensus 113 ~~~~~~v~--~~~~~~~------------------~----~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 113 ESNPRVID--DARARQL------------------C----ADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred hcCCcccC--HHHHHHH------------------H----HHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 3 11110 0011111 1 11223579999999999999999988753
No 229
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.51 E-value=1e-13 Score=143.10 Aligned_cols=108 Identities=13% Similarity=0.215 Sum_probs=69.0
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCC-------chhhhhhHHHHHHHHhhccCCe-E
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN-------PMTFMSNMLYACSILYKTRLPL-V 235 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~-------~~~~~~~~l~~~~~l~~~~~P~-I 235 (426)
++..+.||||||+.++. ..+... ...+|++++|||+..+.. .++ ...+.++...++|. |
T Consensus 83 ~~~~i~lIDtPGh~~f~------~~~~~g--~~~aD~ailVVda~~G~~e~~~~~~~qT-----~eh~~~~~~~gi~~ii 149 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFI------KNMITG--TSQADVAILVVASTAGEFEAGISKDGQT-----REHALLAFTLGVKQMI 149 (446)
T ss_pred CCeEEEEEECCChHHHH------HHHHHh--hhhcCEEEEEEEcCCCceecccCCCccH-----HHHHHHHHHcCCCeEE
Confidence 45789999999987651 122211 245899999999998762 333 34455567778885 6
Q ss_pred EEEecCCCCC----hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhh-cCCceEEeecccCCCHHH
Q 014354 236 LAFNKTDVAQ----HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 236 lVlNKiDl~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~vv~vSA~~g~gv~~ 303 (426)
+++||+|... .....++...+..+... + .+. ...++||+||++|.|+.+
T Consensus 150 v~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~--------------~-----g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 150 VCINKMDDKTVNYSQERYDEIKKEVSAYLKK--------------V-----GYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEEEccccccchhhHHHHHHHHHHHHHHHHh--------------c-----CCCcccceEEEeecccCCCccc
Confidence 8999999543 23233333333322221 0 111 247899999999999864
No 230
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.51 E-value=1.1e-13 Score=129.28 Aligned_cols=118 Identities=17% Similarity=0.127 Sum_probs=72.2
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKT 241 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKi 241 (426)
+...+.+|||||+..+. .+...+ ...++++++|+|.....+.... ..+...+. ..++|+++|+||+
T Consensus 56 ~~i~i~~~Dt~g~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~s~~~~----~~~~~~i~~~~~~~~i~lv~nK~ 123 (215)
T PTZ00132 56 GPICFNVWDTAGQEKFG-------GLRDGY-YIKGQCAIIMFDVTSRITYKNV----PNWHRDIVRVCENIPIVLVGNKV 123 (215)
T ss_pred eEEEEEEEECCCchhhh-------hhhHHH-hccCCEEEEEEECcCHHHHHHH----HHHHHHHHHhCCCCCEEEEEECc
Confidence 34678899999986641 111111 1246889999998754432111 11111111 2468999999999
Q ss_pred CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHHHhhhh
Q 014354 242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYK 320 (426)
Q Consensus 242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~~~~~ 320 (426)
|+.......+... +. . .....++++||++|.|+.+.+.+|.+.+...+..+.
T Consensus 124 Dl~~~~~~~~~~~----~~----------------------~-~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ 175 (215)
T PTZ00132 124 DVKDRQVKARQIT----FH----------------------R-KKNLQYYDISAKSNYNFEKPFLWLARRLTNDPNLVF 175 (215)
T ss_pred cCccccCCHHHHH----HH----------------------H-HcCCEEEEEeCCCCCCHHHHHHHHHHHHhhccccee
Confidence 9865321111110 10 0 123568999999999999999999988877666543
No 231
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.51 E-value=2.6e-13 Score=139.85 Aligned_cols=112 Identities=15% Similarity=0.163 Sum_probs=65.7
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCC---CCchhhhhhHHHHHHHHhhcc-CCeEEEEe
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS---ANPMTFMSNMLYACSILYKTR-LPLVLAFN 239 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~---~~~~~~~~~~l~~~~~l~~~~-~P~IlVlN 239 (426)
.+..+.||||||+.++. ..+... ...+|++++|+|+..+ ...+... .+.++...+ .|+|+|+|
T Consensus 83 ~~~~i~iiDtpGh~~f~------~~~~~~--~~~aD~~ilVvDa~~~~~~~~~~t~~-----~~~~~~~~~~~~iIVviN 149 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFI------KNMITG--ASQADAAVLVVAVGDGEFEVQPQTRE-----HAFLARTLGINQLIVAIN 149 (426)
T ss_pred CCeEEEEEECCCHHHHH------HHHHhh--hhhCCEEEEEEECCCCCcccCCchHH-----HHHHHHHcCCCeEEEEEE
Confidence 45789999999986541 111111 2457999999999887 3333211 112223334 46888999
Q ss_pred cCCCCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 240 KTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 240 KiDl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
|+|+... .........+..+... .+. .....+++++||++|.|+.++..
T Consensus 150 K~Dl~~~~~~~~~~~~~ei~~~~~~--------------~g~----~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 150 KMDSVNYDEEEFEAIKKEVSNLIKK--------------VGY----NPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred ChhccCccHHHHHHHHHHHHHHHHH--------------cCC----CcccceEEEeecccccccccccc
Confidence 9999752 2222233333322211 000 01236899999999999987543
No 232
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.51 E-value=2.3e-13 Score=142.90 Aligned_cols=139 Identities=21% Similarity=0.241 Sum_probs=81.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+...|+|+|++|||||||+++|+.........+.+-+.... ..+ ..|. . +.-+..|+.-...++.
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~----~~~-~~D~---~---~~E~~rgiSi~~~~~~---- 73 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSG----RHA-TSDW---M---EMEKQRGISVTSSVMQ---- 73 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccC----ccc-cCCC---c---HHHHhhCCceeeeeEE----
Confidence 45689999999999999999998654333322222110000 000 0000 0 0011122111111111
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
+ ..+++.+.||||||+.++. ......+ ..+|++|+|||+..+...+. ..++..+
T Consensus 74 ----~---------~~~~~~inliDTPG~~df~------~~~~~~l--~~aD~aIlVvDa~~gv~~~t-----~~l~~~~ 127 (526)
T PRK00741 74 ----F---------PYRDCLINLLDTPGHEDFS------EDTYRTL--TAVDSALMVIDAAKGVEPQT-----RKLMEVC 127 (526)
T ss_pred ----E---------EECCEEEEEEECCCchhhH------HHHHHHH--HHCCEEEEEEecCCCCCHHH-----HHHHHHH
Confidence 0 0356789999999997752 1222233 34699999999998876543 2344555
Q ss_pred hhccCCeEEEEecCCCCChH
Q 014354 228 YKTRLPLVLAFNKTDVAQHE 247 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~ 247 (426)
...++|+++++||+|+....
T Consensus 128 ~~~~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 128 RLRDTPIFTFINKLDRDGRE 147 (526)
T ss_pred HhcCCCEEEEEECCcccccC
Confidence 67799999999999987643
No 233
>PRK10218 GTP-binding protein; Provisional
Probab=99.51 E-value=1.8e-13 Score=145.43 Aligned_cols=121 Identities=16% Similarity=0.192 Sum_probs=78.4
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl 243 (426)
+++.+.||||||+.++. ..+...+ ..+|++|+|+|+..+...++ ..++..+...++|.|+|+||+|+
T Consensus 66 ~~~~inliDTPG~~df~------~~v~~~l--~~aDg~ILVVDa~~G~~~qt-----~~~l~~a~~~gip~IVviNKiD~ 132 (607)
T PRK10218 66 NDYRINIVDTPGHADFG------GEVERVM--SMVDSVLLVVDAFDGPMPQT-----RFVTKKAFAYGLKPIVVINKVDR 132 (607)
T ss_pred CCEEEEEEECCCcchhH------HHHHHHH--HhCCEEEEEEecccCccHHH-----HHHHHHHHHcCCCEEEEEECcCC
Confidence 56789999999998862 1222222 34799999999998866544 33445566778999999999998
Q ss_pred CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC----------CHHHHHHHHHHHHH
Q 014354 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA----------GIEAYFKAVEESAQ 313 (426)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~----------gv~~l~~~l~~~~~ 313 (426)
..... ......+..+...+ .. . .....+|++++||++|. |+..|++.|...+|
T Consensus 133 ~~a~~-~~vl~ei~~l~~~l--------------~~-~-~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 133 PGARP-DWVVDQVFDLFVNL--------------DA-T-DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CCCch-hHHHHHHHHHHhcc--------------Cc-c-ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 75321 11222222221110 00 0 01123679999999998 58888888887776
Q ss_pred H
Q 014354 314 E 314 (426)
Q Consensus 314 ~ 314 (426)
.
T Consensus 196 ~ 196 (607)
T PRK10218 196 A 196 (607)
T ss_pred C
Confidence 4
No 234
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.1e-13 Score=123.99 Aligned_cols=166 Identities=18% Similarity=0.242 Sum_probs=104.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
...++|+|+|..|+|||.|+.++....+..... +.++.|-.. |... .
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~-sTIGVDf~~-----------rt~e-----------------~---- 53 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYI-STIGVDFKI-----------RTVE-----------------L---- 53 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhc-ceeeeEEEE-----------EEee-----------------e----
Confidence 456899999999999999999999987664332 111211111 1000 0
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCC--CCCchhhhhhHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYAC 224 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~--~~~~~~~~~~~l~~~ 224 (426)
.++...++||||+|+.++. .+...++++ ++.||+|.|.+. +++....| +.-+
T Consensus 54 ---------------~gk~iKlQIWDTAGQERFr------tit~syYR~--ahGii~vyDiT~~~SF~~v~~W---i~Ei 107 (205)
T KOG0084|consen 54 ---------------DGKTIKLQIWDTAGQERFR------TITSSYYRG--AHGIIFVYDITKQESFNNVKRW---IQEI 107 (205)
T ss_pred ---------------cceEEEEEeeeccccHHHh------hhhHhhccC--CCeEEEEEEcccHHHhhhHHHH---HHHh
Confidence 1345789999999998863 333444444 467777777764 33333322 2223
Q ss_pred HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCc-eEEeecccCCCHHH
Q 014354 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLK-SVGVSSVSGAGIEA 303 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-vv~vSA~~g~gv~~ 303 (426)
+.....++|.+||.||+|+........ +..+.|.. -+ ..+ ++++||+.+.+|++
T Consensus 108 ~~~~~~~v~~lLVGNK~Dl~~~~~v~~--~~a~~fa~----------------------~~-~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 108 DRYASENVPKLLVGNKCDLTEKRVVST--EEAQEFAD----------------------EL-GIPIFLETSAKDSTNVED 162 (205)
T ss_pred hhhccCCCCeEEEeeccccHhheecCH--HHHHHHHH----------------------hc-CCcceeecccCCccCHHH
Confidence 334456789999999999987653211 11111111 12 234 89999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014354 304 YFKAVEESAQEFM 316 (426)
Q Consensus 304 l~~~l~~~~~~~~ 316 (426)
.|..|...+....
T Consensus 163 ~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 163 AFLTLAKELKQRK 175 (205)
T ss_pred HHHHHHHHHHHhc
Confidence 9998887776643
No 235
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.51 E-value=2e-13 Score=128.30 Aligned_cols=67 Identities=25% Similarity=0.253 Sum_probs=49.0
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
++.+.||||||+.++. ......+ ..+|++++|+|+..+...++ ...+..+...++|.|+|+||+|+.
T Consensus 72 ~~~i~iiDTPG~~~f~------~~~~~~l--~~aD~~ilVvD~~~g~~~~t-----~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVDFS------SEVTAAL--RLCDGALVVVDAVEGVCVQT-----ETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccccH------HHHHHHH--HhcCeeEEEEECCCCCCHHH-----HHHHHHHHHcCCCEEEEEECCCcc
Confidence 5788999999998862 2222222 34799999999998876654 233444555678999999999986
No 236
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.51 E-value=1.3e-13 Score=127.11 Aligned_cols=182 Identities=14% Similarity=0.118 Sum_probs=102.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+|+|.+|||||||+|.|++....... ....+.|. .+.....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~----------~~~~~~T~----------------------~~~~~~~----- 44 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESK----------LSASSVTK----------------------TCQKESA----- 44 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccc----------cCCCCccc----------------------ccceeeE-----
Confidence 6899999999999999999998643210 00001111 0000000
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccc-hhchHHHHHHHHHh--cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFT-WSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~-~~~~~~~l~~~~~~--~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
...+.++.||||||+.+... .......+...+.. ..++++|||+++.+ +...+ ..++..+
T Consensus 45 -----------~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d-----~~~l~~l 107 (196)
T cd01852 45 -----------VWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEE-----EQAVETL 107 (196)
T ss_pred -----------EECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHH-----HHHHHHH
Confidence 02446899999999987531 11122333333332 34799999999977 54432 1222223
Q ss_pred hh-----ccCCeEEEEecCCCCChHhHHHHHHHH-HHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354 228 YK-----TRLPLVLAFNKTDVAQHEFALEWMQDF-EVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (426)
Q Consensus 228 ~~-----~~~P~IlVlNKiDl~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv 301 (426)
.+ .-.++|+|+|++|......+.+++... ..|+..+ +..+. .++.+....+ |+..+.++
T Consensus 108 ~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~-----------~~c~~---r~~~f~~~~~-~~~~~~q~ 172 (196)
T cd01852 108 QELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLL-----------EKCGG---RYVAFNNKAK-GEEQEQQV 172 (196)
T ss_pred HHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHH-----------HHhCC---eEEEEeCCCC-cchhHHHH
Confidence 22 235889999999988765444333222 1111111 00000 0111122333 56778999
Q ss_pred HHHHHHHHHHHHH-HHhhhhh
Q 014354 302 EAYFKAVEESAQE-FMETYKA 321 (426)
Q Consensus 302 ~~l~~~l~~~~~~-~~~~~~~ 321 (426)
.+|++.|.+.+++ ..|+|..
T Consensus 173 ~~Ll~~i~~~~~~~~~~~~~~ 193 (196)
T cd01852 173 KELLAKVESMVKENGGKPYTN 193 (196)
T ss_pred HHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999998 5666654
No 237
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.1e-13 Score=123.48 Aligned_cols=162 Identities=17% Similarity=0.218 Sum_probs=99.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+++++|..++|||||+++++...+...+.+.| +.|-
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATI-GiDF---------------------------------------- 59 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATI-GIDF---------------------------------------- 59 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhccccccee-eeEE----------------------------------------
Confidence 34789999999999999999999998765443322 1110
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCC--CCCCchhhhhhHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTP--RSANPMTFMSNMLYACS 225 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~--~~~~~~~~~~~~l~~~~ 225 (426)
++..+.- ....+.+++|||+|++++. +.+-.+++. +.++|+|.|.+ ..+.....|.+ +
T Consensus 60 lskt~~l-------~d~~vrLQlWDTAGQERFr------slipsY~Rd--s~vaviVyDit~~~Sfe~t~kWi~-----d 119 (221)
T KOG0094|consen 60 LSKTMYL-------EDRTVRLQLWDTAGQERFR------SLIPSYIRD--SSVAVIVYDITDRNSFENTSKWIE-----D 119 (221)
T ss_pred EEEEEEE-------cCcEEEEEEEecccHHHHh------hhhhhhccC--CeEEEEEEeccccchHHHHHHHHH-----H
Confidence 0110000 0233789999999999872 223333333 35555555654 34444444422 2
Q ss_pred HHhhc---cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354 226 ILYKT---RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 226 ~l~~~---~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~ 302 (426)
..... ..-++||.||.||.+++.......... ++ + -++.++.+||+.|.||.
T Consensus 120 v~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~k--------------------Ak---e--l~a~f~etsak~g~NVk 174 (221)
T KOG0094|consen 120 VRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERK--------------------AK---E--LNAEFIETSAKAGENVK 174 (221)
T ss_pred HHhccCCCceEEEEEcccccccchhhhhHHHHHHH--------------------HH---H--hCcEEEEecccCCCCHH
Confidence 22222 244567999999999864321111100 11 1 13468999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014354 303 AYFKAVEESAQEF 315 (426)
Q Consensus 303 ~l~~~l~~~~~~~ 315 (426)
.||..|...++..
T Consensus 175 ~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 175 QLFRRIAAALPGM 187 (221)
T ss_pred HHHHHHHHhccCc
Confidence 9999988888764
No 238
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=6.6e-14 Score=124.88 Aligned_cols=165 Identities=17% Similarity=0.244 Sum_probs=97.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
...+++|+|..|+|||||+-++....+.......| |+-+.+...
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TI------------------------------------GaaF~tktv 47 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTI------------------------------------GAAFLTKTV 47 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCcccccccccc------------------------------------ccEEEEEEE
Confidence 45789999999999999999999988765321111 110000000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
-. ......+.||||+|++++.....+-. ..+.++|+|-|.++.-+ |... ..+...+
T Consensus 48 ~~------------~~~~ikfeIWDTAGQERy~slapMYy--------RgA~AAivvYDit~~~S---F~~a-K~WvkeL 103 (200)
T KOG0092|consen 48 TV------------DDNTIKFEIWDTAGQERYHSLAPMYY--------RGANAAIVVYDITDEES---FEKA-KNWVKEL 103 (200)
T ss_pred Ee------------CCcEEEEEEEEcCCccccccccccee--------cCCcEEEEEEecccHHH---HHHH-HHHHHHH
Confidence 00 01236889999999998732222211 23567777777764332 2211 1122222
Q ss_pred h-hcc--CCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 228 Y-KTR--LPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 228 ~-~~~--~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
. +.. +-+.||.||+|+.....+. + ++.+.+ +.+ ....++.+||++|.||.++
T Consensus 104 ~~~~~~~~vialvGNK~DL~~~R~V~-~-~ea~~y--------------Ae~---------~gll~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 104 QRQASPNIVIALVGNKADLLERREVE-F-EEAQAY--------------AES---------QGLLFFETSAKTGENVNEI 158 (200)
T ss_pred HhhCCCCeEEEEecchhhhhhccccc-H-HHHHHH--------------HHh---------cCCEEEEEecccccCHHHH
Confidence 2 333 2233589999999854321 1 111111 111 3467999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 014354 305 FKAVEESAQEFME 317 (426)
Q Consensus 305 ~~~l~~~~~~~~~ 317 (426)
|..|.+.+|....
T Consensus 159 f~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 159 FQAIAEKLPCSDP 171 (200)
T ss_pred HHHHHHhccCccc
Confidence 9999999887543
No 239
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=99.50 E-value=6.1e-14 Score=138.51 Aligned_cols=165 Identities=18% Similarity=0.229 Sum_probs=101.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+.++++|.|+.|||||||||+|+.. ..+.+++|+.++.+-. ++| ...+. ..-..+-...|||+||++.
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~--~~~~riaVi~NEfG~v------~iD-~~ll~--~~~~~v~eL~~GCiCCs~~- 70 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFGEV------SVD-DQLIG--DRATQIKTLTNGCICCSRS- 70 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc--ccCCcccccccCcCCc------ccc-HHHHh--CcCceEEEECCCEEEEccC-
Confidence 5679999999999999999999975 3466777776665422 222 00110 0001122345899999854
Q ss_pred ccccHHHHHHHHHHHh---cCCCEEEEcCCCcccccchhchHHHHHHHH------Hh-cCCcEEEEEEeCCCCCCchhhh
Q 014354 148 FTTKFDEVISLIERRA---DHLDYVLVDTPGQIEIFTWSASGAIITEAF------AS-TFPTVVTYVVDTPRSANPMTFM 217 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~---~~~~~~liDTPGi~e~~~~~~~~~~l~~~~------~~-~~~d~vl~VVDa~~~~~~~~~~ 217 (426)
.+....+..+..... ..++++||+|.|+.++. .+.+.+ .. ...+.+++|||+.+.......
T Consensus 71 -~~l~~~l~~l~~~~~~~~~~~d~IvIEttG~a~p~-------~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~- 141 (318)
T PRK11537 71 -NELEDALLDLLDNLDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ- 141 (318)
T ss_pred -chHHHHHHHHHHHHhccCCCCCEEEEECCCccCHH-------HHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccc-
Confidence 444444444443222 25899999999998872 233332 11 124789999999875433211
Q ss_pred hhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHH
Q 014354 218 SNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQ 260 (426)
Q Consensus 218 ~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~ 260 (426)
.. ....|.....+||+||+|+++.. ..+...++.++
T Consensus 142 ---~~--~~~~Qi~~AD~IvlnK~Dl~~~~--~~~~~~l~~ln 177 (318)
T PRK11537 142 ---FT--IAQSQVGYADRILLTKTDVAGEA--EKLRERLARIN 177 (318)
T ss_pred ---cH--HHHHHHHhCCEEEEeccccCCHH--HHHHHHHHHhC
Confidence 11 12357788999999999999854 23444444443
No 240
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.47 E-value=6.3e-13 Score=123.38 Aligned_cols=139 Identities=19% Similarity=0.298 Sum_probs=71.9
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH-HHHH--HhhccCCeEEEEecC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSI--LYKTRLPLVLAFNKT 241 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~-~~~~--l~~~~~P~IlVlNKi 241 (426)
+..+.||||||+.++. ..+...+... .+++|||+|+.............++ ++.. ....++|++||+||+
T Consensus 47 ~~~~~l~D~pG~~~~~------~~~~~~~~~~-~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~ 119 (203)
T cd04105 47 GKKFRLVDVPGHPKLR------DKLLETLKNS-AKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQ 119 (203)
T ss_pred CceEEEEECCCCHHHH------HHHHHHHhcc-CCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecch
Confidence 4679999999997641 2222333222 4899999999875322111111111 1111 123589999999999
Q ss_pred CCCChHhHHHHHHHHHHHHHHhccccch------hhhHHH-Hh-h-----hhHhhhhcCCceEEeecccCC-CHHHHHHH
Q 014354 242 DVAQHEFALEWMQDFEVFQAAISSDHSY------TSTLTN-SL-S-----LALDEFYKNLKSVGVSSVSGA-GIEAYFKA 307 (426)
Q Consensus 242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~-~~-~-----~~l~~~~~~~~vv~vSA~~g~-gv~~l~~~ 307 (426)
|+........+.+.++.-...++..+.. ...-.. .+ + .........+.++..|++.+. |++.+.+|
T Consensus 120 Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w 199 (203)
T cd04105 120 DLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEW 199 (203)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHH
Confidence 9876543333333333222211111000 000000 00 0 000011134688999998876 69999888
Q ss_pred HHH
Q 014354 308 VEE 310 (426)
Q Consensus 308 l~~ 310 (426)
|.+
T Consensus 200 ~~~ 202 (203)
T cd04105 200 IDE 202 (203)
T ss_pred Hhh
Confidence 864
No 241
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.47 E-value=7.6e-13 Score=139.05 Aligned_cols=137 Identities=19% Similarity=0.190 Sum_probs=78.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+...|+|+|++|+|||||+++|+.........+.+-+.. ....+ ..| .. +..+..|+.-...++.
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g----~~~~t-~~D---~~---~~E~~rgisi~~~~~~---- 74 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRG----SQRHA-KSD---WM---EMEKQRGISITTSVMQ---- 74 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceecccc----ccccc-cCC---CC---HHHHhcCCcEEEEEEE----
Confidence 567899999999999999999976543332222221100 00000 001 00 0001112111111111
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
+. .+++++.||||||+.++. ......+ ..+|++|+|||+..+..... ..++..+
T Consensus 75 ----~~---------~~~~~inliDTPG~~df~------~~~~~~l--~~aD~aIlVvDa~~gv~~~t-----~~l~~~~ 128 (527)
T TIGR00503 75 ----FP---------YRDCLVNLLDTPGHEDFS------EDTYRTL--TAVDNCLMVIDAAKGVETRT-----RKLMEVT 128 (527)
T ss_pred ----Ee---------eCCeEEEEEECCChhhHH------HHHHHHH--HhCCEEEEEEECCCCCCHHH-----HHHHHHH
Confidence 11 356899999999996642 1122222 34799999999998766543 2233445
Q ss_pred hhccCCeEEEEecCCCCC
Q 014354 228 YKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~ 245 (426)
...++|.|+++||+|+..
T Consensus 129 ~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 129 RLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred HhcCCCEEEEEECccccC
Confidence 567899999999999864
No 242
>PRK13351 elongation factor G; Reviewed
Probab=99.47 E-value=6.1e-13 Score=144.86 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=50.5
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl 243 (426)
.+..+.||||||+.++. ..+...+ ..+|++++|+|+..+..... ...+..+...++|.++|+||+|+
T Consensus 71 ~~~~i~liDtPG~~df~------~~~~~~l--~~aD~~ilVvd~~~~~~~~~-----~~~~~~~~~~~~p~iiviNK~D~ 137 (687)
T PRK13351 71 DNHRINLIDTPGHIDFT------GEVERSL--RVLDGAVVVFDAVTGVQPQT-----ETVWRQADRYGIPRLIFINKMDR 137 (687)
T ss_pred CCEEEEEEECCCcHHHH------HHHHHHH--HhCCEEEEEEeCCCCCCHHH-----HHHHHHHHhcCCCEEEEEECCCC
Confidence 45789999999997752 1122222 34699999999988776543 23344566678999999999999
Q ss_pred CCh
Q 014354 244 AQH 246 (426)
Q Consensus 244 ~~~ 246 (426)
...
T Consensus 138 ~~~ 140 (687)
T PRK13351 138 VGA 140 (687)
T ss_pred CCC
Confidence 865
No 243
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=2.9e-13 Score=119.95 Aligned_cols=165 Identities=14% Similarity=0.188 Sum_probs=101.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
..++++++|..|+|||.||.+++...+..... ..++.+-+ .-..+.+
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd-~TiGvefg-------------------------------~r~~~id- 51 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-LTIGVEFG-------------------------------ARMVTID- 51 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccccc-ceeeeeec-------------------------------eeEEEEc-
Confidence 45789999999999999999999988654221 11111111 1011111
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
.++..++||||+|+..+. .....+++.+...++||-|+....+...+.| +.-++..
T Consensus 52 ---------------~k~IKlqiwDtaGqe~fr------sv~~syYr~a~GalLVydit~r~sF~hL~~w---L~D~rq~ 107 (216)
T KOG0098|consen 52 ---------------GKQIKLQIWDTAGQESFR------SVTRSYYRGAAGALLVYDITRRESFNHLTSW---LEDARQH 107 (216)
T ss_pred ---------------CceEEEEEEecCCcHHHH------HHHHHHhccCcceEEEEEccchhhHHHHHHH---HHHHHHh
Confidence 356789999999998862 2333445545455666666666666654433 1111222
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...+.-++|+.||+|+...+.+.+. . .+.++++.+ ..+..+||++++||++.|.-
T Consensus 108 ~~~NmvImLiGNKsDL~~rR~Vs~E--E--------------GeaFA~ehg---------LifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 108 SNENMVIMLIGNKSDLEARREVSKE--E--------------GEAFAREHG---------LIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred cCCCcEEEEEcchhhhhccccccHH--H--------------HHHHHHHcC---------ceeehhhhhhhhhHHHHHHH
Confidence 2456778899999999987643211 1 122333333 33668999999999999876
Q ss_pred HHHHHHH
Q 014354 308 VEESAQE 314 (426)
Q Consensus 308 l~~~~~~ 314 (426)
....+..
T Consensus 163 ta~~Iy~ 169 (216)
T KOG0098|consen 163 TAKEIYR 169 (216)
T ss_pred HHHHHHH
Confidence 6655444
No 244
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.47 E-value=4.6e-13 Score=123.50 Aligned_cols=128 Identities=16% Similarity=0.111 Sum_probs=66.1
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKT 241 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKi 241 (426)
..+.+.||||||+.+.. . ...-..+|++|+|.|.....+-.. ....+...+. ..+.|+|||+||+
T Consensus 64 ~~v~l~iwDTaG~~~~~---------~-~~~~~~ad~iilv~d~t~~~Sf~~---~~~~w~~~i~~~~~~~piilvgNK~ 130 (195)
T cd01873 64 VSVSLRLWDTFGDHDKD---------R-RFAYGRSDVVLLCFSIASPNSLRN---VKTMWYPEIRHFCPRVPVILVGCKL 130 (195)
T ss_pred EEEEEEEEeCCCChhhh---------h-cccCCCCCEEEEEEECCChhHHHH---HHHHHHHHHHHhCCCCCEEEEEEch
Confidence 34688999999996421 0 011235799999999865432211 1001111122 1368999999999
Q ss_pred CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354 242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE 310 (426)
Q Consensus 242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~ 310 (426)
|+...... ........+...... ...+....+..+.... ..+++.+||++|.||.++|..+.+
T Consensus 131 DL~~~~~~-~~~~~~~~~~~~~~~----~~~V~~~e~~~~a~~~-~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 131 DLRYADLD-EVNRARRPLARPIKN----ADILPPETGRAVAKEL-GIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred hccccccc-hhhhccccccccccc----CCccCHHHHHHHHHHh-CCEEEEcCCCCCCCHHHHHHHHHH
Confidence 98642100 000000000000000 0001111111111112 247999999999999999998875
No 245
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=99.46 E-value=2.2e-13 Score=121.47 Aligned_cols=153 Identities=15% Similarity=0.220 Sum_probs=86.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
++++|+|++|||||||++++++... +.++.++..+.+-..+... .+ ...-..+.-..+||+||+++ .
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~--~~~~~~i~~~~G~~~~d~~-------~~--~~~~~~v~~l~~GCiCC~~~--~ 67 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQH--GRKIAVIENEFGEVGIDNQ-------LV--VDTDEEIIEMNNGCICCTVR--G 67 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhccc--CCcEEEEecCCCccchhHH-------HH--hCCCceEEEeCCCEeEeeCc--h
Confidence 4689999999999999999998743 4455555444321111100 00 00000111225799999743 2
Q ss_pred ccHHHHHHHHH---HHhcCCCEEEEcCCCcccccchhchHHHHHH-HHH-hcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 150 TKFDEVISLIE---RRADHLDYVLVDTPGQIEIFTWSASGAIITE-AFA-STFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 150 ~~~~~~~~~~~---~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~-~~~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
.....+..++. ....+++++||||||..++. ......+.. .+. ....+.++++||+.+....... . .
T Consensus 68 ~l~~~l~~l~~~~~~~~~~~d~I~IEt~G~~~p~--~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~---~---~ 139 (158)
T cd03112 68 DLIRALLDLLERLDAGKIAFDRIVIETTGLADPG--PVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQ---Q---T 139 (158)
T ss_pred hHHHHHHHHHHHHHhccCCCCEEEEECCCcCCHH--HHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhc---c---H
Confidence 22222222222 22357999999999998863 111111111 111 2347899999998765432211 1 1
Q ss_pred HHHhhccCCeEEEEecCCC
Q 014354 225 SILYKTRLPLVLAFNKTDV 243 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl 243 (426)
....|.....+||+||+|+
T Consensus 140 ~~~~Qi~~ad~ivlnk~dl 158 (158)
T cd03112 140 EAQSQIAFADRILLNKTDL 158 (158)
T ss_pred HHHHHHHHCCEEEEecccC
Confidence 1245677888999999996
No 246
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.46 E-value=6.3e-13 Score=119.60 Aligned_cols=178 Identities=19% Similarity=0.175 Sum_probs=108.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHH-cC---CCCCCC-ccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQ-FN---LGPNGG-ILT 143 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~-~~---l~~ng~-i~~ 143 (426)
...|.|.|+||||||||+.+++...... ++++|+..|-.. . .|.- .+.+ .+ .+-+.| .|
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t------~----~Da~----~l~~~~g~~i~~v~TG~~C- 76 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYT------K----EDAD----RLRKLPGEPIIGVETGKGC- 76 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeec------h----hhHH----HHHhCCCCeeEEeccCCcc-
Confidence 3789999999999999999999988665 777777666321 0 0100 0111 11 111233 33
Q ss_pred ccccccccHHHHHHHHHHHhcCCCEEEEcCCC-cccccchhchHHHHHHHHHhcCCc-EEEEEEeCCCCCCchhhhhhHH
Q 014354 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPG-QIEIFTWSASGAIITEAFASTFPT-VVTYVVDTPRSANPMTFMSNML 221 (426)
Q Consensus 144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG-i~e~~~~~~~~~~l~~~~~~~~~d-~vl~VVDa~~~~~~~~~~~~~l 221 (426)
. +-.....+-+..+.......+++||++.| ..-++. -...+ +-|||||...|..........
T Consensus 77 H--~da~m~~~ai~~l~~~~~~~Dll~iEs~GNL~~~~s-------------p~L~d~~~v~VidvteGe~~P~K~gP~- 140 (202)
T COG0378 77 H--LDASMNLEAIEELVLDFPDLDLLFIESVGNLVCPFS-------------PDLGDHLRVVVIDVTEGEDIPRKGGPG- 140 (202)
T ss_pred C--CcHHHHHHHHHHHhhcCCcCCEEEEecCcceecccC-------------cchhhceEEEEEECCCCCCCcccCCCc-
Confidence 2 11222222222233223347999999999 333221 12234 889999999887653321110
Q ss_pred HHHHHHhhccCCeEEEEecCCCCChHhH--HHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC
Q 014354 222 YACSILYKTRLPLVLAFNKTDVAQHEFA--LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA 299 (426)
Q Consensus 222 ~~~~~l~~~~~P~IlVlNKiDl~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~ 299 (426)
.-...++|+||+|+++.-.. ....++.+ ...+..++|.+|+++|+
T Consensus 141 --------i~~aDllVInK~DLa~~v~~dlevm~~da~-------------------------~~np~~~ii~~n~ktg~ 187 (202)
T COG0378 141 --------IFKADLLVINKTDLAPYVGADLEVMARDAK-------------------------EVNPEAPIIFTNLKTGE 187 (202)
T ss_pred --------eeEeeEEEEehHHhHHHhCccHHHHHHHHH-------------------------HhCCCCCEEEEeCCCCc
Confidence 11267999999999986432 22333332 23466899999999999
Q ss_pred CHHHHHHHHHHH
Q 014354 300 GIEAYFKAVEES 311 (426)
Q Consensus 300 gv~~l~~~l~~~ 311 (426)
|++++++++...
T Consensus 188 G~~~~~~~i~~~ 199 (202)
T COG0378 188 GLDEWLRFIEPQ 199 (202)
T ss_pred CHHHHHHHHHhh
Confidence 999998888654
No 247
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.46 E-value=1.6e-12 Score=122.60 Aligned_cols=145 Identities=19% Similarity=0.292 Sum_probs=89.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..++.+|+|+|++|+|||||+|.|++..... .+... .|.++.
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~-----------~~~~~--------------------------~g~i~i- 77 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ-----------NISDI--------------------------KGPITV- 77 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccC-----------ccccc--------------------------cccEEE-
Confidence 4567899999999999999999999763211 00000 111100
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
.. ..+.++.++||||... .+.+.. ..+|++++|+|+..+....+ ..++.
T Consensus 78 --~~-------------~~~~~i~~vDtPg~~~---------~~l~~a--k~aDvVllviDa~~~~~~~~-----~~i~~ 126 (225)
T cd01882 78 --VT-------------GKKRRLTFIECPNDIN---------AMIDIA--KVADLVLLLIDASFGFEMET-----FEFLN 126 (225)
T ss_pred --Ee-------------cCCceEEEEeCCchHH---------HHHHHH--HhcCEEEEEEecCcCCCHHH-----HHHHH
Confidence 00 2346899999999631 222222 34799999999988776544 23444
Q ss_pred HHhhccCCeEE-EEecCCCCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC
Q 014354 226 ILYKTRLPLVL-AFNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA 299 (426)
Q Consensus 226 ~l~~~~~P~Il-VlNKiDl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~ 299 (426)
.+...++|.++ |+||+|+..... ...+...++. . ...+++.+.+++++||++.-
T Consensus 127 ~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~---~-----------------~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 127 ILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKH---R-----------------FWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred HHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHH---H-----------------HHHhhCCCCcEEEEeeccCC
Confidence 45566788655 999999985432 2223222221 1 11134567899999999863
No 248
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=7.2e-13 Score=120.22 Aligned_cols=165 Identities=17% Similarity=0.188 Sum_probs=103.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
.....+|+++|.+|||||.|+-++....+..... . +-.||..-+. .
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~-s-------------TiGIDFk~kt--------------------i 54 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFI-S-------------TIGIDFKIKT--------------------I 54 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCcc-c-------------eEEEEEEEEE--------------------E
Confidence 3467899999999999999999999887653221 1 1122211000 0
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCC--chhhhhhHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYA 223 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~--~~~~~~~~l~~ 223 (426)
. .. +....+++|||+|+.++. .....+++. +..+++|+|.++.-+ ....| +..
T Consensus 55 ~--l~------------g~~i~lQiWDtaGQerf~------ti~~sYyrg--A~gi~LvyDitne~Sfeni~~W---~~~ 109 (207)
T KOG0078|consen 55 E--LD------------GKKIKLQIWDTAGQERFR------TITTAYYRG--AMGILLVYDITNEKSFENIRNW---IKN 109 (207)
T ss_pred E--eC------------CeEEEEEEEEcccchhHH------HHHHHHHhh--cCeeEEEEEccchHHHHHHHHH---HHH
Confidence 0 00 234688999999998873 344445544 467888888764322 22222 222
Q ss_pred HHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 224 ~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
.+.......|.+||.||+|+...+.+..- . +.-++.-| .++++++||++|.||++
T Consensus 110 I~e~a~~~v~~~LvGNK~D~~~~R~V~~e--~----------------------ge~lA~e~-G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 110 IDEHASDDVVKILVGNKCDLEEKRQVSKE--R----------------------GEALAREY-GIKFFETSAKTNFNIEE 164 (207)
T ss_pred HHhhCCCCCcEEEeeccccccccccccHH--H----------------------HHHHHHHh-CCeEEEccccCCCCHHH
Confidence 33334457899999999999885432111 0 11111112 47899999999999999
Q ss_pred HHHHHHHHHHH
Q 014354 304 YFKAVEESAQE 314 (426)
Q Consensus 304 l~~~l~~~~~~ 314 (426)
.|-.|.+.+..
T Consensus 165 aF~~La~~i~~ 175 (207)
T KOG0078|consen 165 AFLSLARDILQ 175 (207)
T ss_pred HHHHHHHHHHh
Confidence 99888776654
No 249
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.45 E-value=4.3e-13 Score=118.81 Aligned_cols=158 Identities=20% Similarity=0.307 Sum_probs=93.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+++|.+|||||||++++.+..+..... |.. ..+.. ..... .
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~-------~t~-------~~~~~--------------------~~~~~--~- 43 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYI-------PTI-------GIDSY--------------------SKEVS--I- 43 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSE-------TTS-------SEEEE--------------------EEEEE--E-
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccc-------ccc-------ccccc--------------------ccccc--c-
Confidence 58999999999999999999876543211 111 00000 00000 0
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-- 228 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-- 228 (426)
....+.+.|||++|+..+. .+...+ ...+|++++|.|....- .|.. ...++..+.
T Consensus 44 -----------~~~~~~l~i~D~~g~~~~~-------~~~~~~-~~~~~~~ii~fd~~~~~---S~~~-~~~~~~~i~~~ 100 (162)
T PF00071_consen 44 -----------DGKPVNLEIWDTSGQERFD-------SLRDIF-YRNSDAIIIVFDVTDEE---SFEN-LKKWLEEIQKY 100 (162)
T ss_dssp -----------TTEEEEEEEEEETTSGGGH-------HHHHHH-HTTESEEEEEEETTBHH---HHHT-HHHHHHHHHHH
T ss_pred -----------ccccccccccccccccccc-------cccccc-ccccccccccccccccc---cccc-ccccccccccc
Confidence 0233678999999987652 122221 23468899999875422 1111 112222222
Q ss_pred -hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 229 -KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 229 -~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
....|++||.||.|+.....+. .+..+.+. ..++ .+++.+||++|.||.++|..
T Consensus 101 ~~~~~~iivvg~K~D~~~~~~v~--~~~~~~~~----------------------~~~~-~~~~e~Sa~~~~~v~~~f~~ 155 (162)
T PF00071_consen 101 KPEDIPIIVVGNKSDLSDEREVS--VEEAQEFA----------------------KELG-VPYFEVSAKNGENVKEIFQE 155 (162)
T ss_dssp STTTSEEEEEEETTTGGGGSSSC--HHHHHHHH----------------------HHTT-SEEEEEBTTTTTTHHHHHHH
T ss_pred ccccccceeeeccccccccccch--hhHHHHHH----------------------HHhC-CEEEEEECCCCCCHHHHHHH
Confidence 2358999999999988733211 01111111 1223 78999999999999999999
Q ss_pred HHHHHH
Q 014354 308 VEESAQ 313 (426)
Q Consensus 308 l~~~~~ 313 (426)
+.+.+.
T Consensus 156 ~i~~i~ 161 (162)
T PF00071_consen 156 LIRKIL 161 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887653
No 250
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.44 E-value=1.3e-12 Score=121.75 Aligned_cols=181 Identities=23% Similarity=0.252 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|+++|++|||||||+++|.+..+...+...+.+..++....++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~----------------------------------- 50 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPY----------------------------------- 50 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeC-----------------------------------
Confidence 789999999999999999999999886655544443333211110
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~ 229 (426)
....++.+|||+|+.++. .++..+- ..++.++++.|.................+.....
T Consensus 51 -------------~~~~~~~~~Dt~gq~~~~-------~~~~~y~-~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~ 109 (219)
T COG1100 51 -------------RRNIKLQLWDTAGQEEYR-------SLRPEYY-RGANGILIVYDSTLRESSDELTEEWLEELRELAP 109 (219)
T ss_pred -------------CCEEEEEeecCCCHHHHH-------HHHHHHh-cCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC
Confidence 012568999999998862 2222221 3367888888876533222221111212221222
Q ss_pred ccCCeEEEEecCCCCChHhHHHH-HHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecc--cCCCHHHHHH
Q 014354 230 TRLPLVLAFNKTDVAQHEFALEW-MQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV--SGAGIEAYFK 306 (426)
Q Consensus 230 ~~~P~IlVlNKiDl~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~--~g~gv~~l~~ 306 (426)
...|+|+|.||+|+......... ...+. .. ..+................++.+|++ .+.++.+++.
T Consensus 110 ~~~~iilv~nK~Dl~~~~~~~~~~~~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~ 178 (219)
T COG1100 110 DDVPILLVGNKIDLFDEQSSSEEILNQLN---RE--------VVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFK 178 (219)
T ss_pred CCceEEEEecccccccchhHHHHHHhhhh---cC--------cchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHH
Confidence 36899999999999987532111 11100 00 00000001100010112238999999 9999999999
Q ss_pred HHHHHHHHHHh
Q 014354 307 AVEESAQEFME 317 (426)
Q Consensus 307 ~l~~~~~~~~~ 317 (426)
.+...+.....
T Consensus 179 ~~~~~~~~~~~ 189 (219)
T COG1100 179 ELLRKLLEEIE 189 (219)
T ss_pred HHHHHHHHhhh
Confidence 99888765443
No 251
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=6e-13 Score=127.17 Aligned_cols=116 Identities=22% Similarity=0.292 Sum_probs=85.5
Q ss_pred CEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCC-CchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354 167 DYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 167 ~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~-~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
.+-|+|.|||.-. +..+++. +.-|.+++||.+...+ .+++ ...+.++.++.- +-+|||-||+|++
T Consensus 87 ~VSfVDaPGHe~L---------MATMLsGAAlMDgAlLvIaANEpcPQPQT--~EHl~AleIigi--k~iiIvQNKIDlV 153 (415)
T COG5257 87 RVSFVDAPGHETL---------MATMLSGAALMDGALLVIAANEPCPQPQT--REHLMALEIIGI--KNIIIVQNKIDLV 153 (415)
T ss_pred EEEEeeCCchHHH---------HHHHhcchhhhcceEEEEecCCCCCCCch--HHHHHHHhhhcc--ceEEEEeccccee
Confidence 6779999999543 2223332 3458999999997655 3444 333445554432 2458899999999
Q ss_pred ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHH
Q 014354 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF 315 (426)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~ 315 (426)
+.+..++-++.++.|... .+..++|+||+||..+.|++.|+++|.+.+|..
T Consensus 154 ~~E~AlE~y~qIk~FvkG--------------------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 154 SRERALENYEQIKEFVKG--------------------TVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred cHHHHHHHHHHHHHHhcc--------------------cccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 999888888888766543 456788999999999999999999999987763
No 252
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.44 E-value=6.6e-13 Score=137.09 Aligned_cols=114 Identities=10% Similarity=0.163 Sum_probs=66.9
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCC-Cch-hhhhhHHHHHHHHhhccCC-eEEEEec
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-NPM-TFMSNMLYACSILYKTRLP-LVLAFNK 240 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~-~~~-~~~~~~l~~~~~l~~~~~P-~IlVlNK 240 (426)
.+..+.|+||||+.++. ..+...+ ..+|++|+|||+..+. ... .+.......+.++...++| +|+++||
T Consensus 83 ~~~~i~liDtPGh~df~------~~~~~g~--~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNK 154 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFI------KNMITGT--SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNK 154 (447)
T ss_pred CCEEEEEEECCCHHHHH------HHHHhhh--hhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEc
Confidence 45789999999998762 1222222 4579999999998762 210 0001113344456677886 5778999
Q ss_pred CCCCCh----HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 241 TDVAQH----EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 241 iDl~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
+|+... ....++.+.++.+... .+.. ....++||+||++|.|+.+
T Consensus 155 mD~~~~~~~~~~~~~i~~ei~~~l~~--------------~g~~----~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 155 MDATTPKYSKARYDEIVKEVSSYLKK--------------VGYN----PDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred ccCCchhhhHHHHHHHHHHHHHHHHH--------------cCCC----cccceEEEEeccccccccc
Confidence 998732 2222233333322211 1100 1236899999999999864
No 253
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.40 E-value=7.9e-12 Score=111.09 Aligned_cols=164 Identities=20% Similarity=0.241 Sum_probs=105.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccc---cccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLP---FAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~---~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~ 144 (426)
...+|+|+|+-|+||||++.++....... +...-+.++... -|..++. |-+.
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~-----t~~~~~~~s~k~kr~tTva~D~-------------------g~~~- 63 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVI-----TEADASSVSGKGKRPTTVAMDF-------------------GSIE- 63 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccce-----eeccccccccccccceeEeecc-------------------cceE-
Confidence 45689999999999999999999875311 000001111111 1111111 1111
Q ss_pred cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
...+..+.|++||||.++ ..+++.+... +.-++++||+++..... ...+.
T Consensus 64 -----------------~~~~~~v~LfgtPGq~RF-------~fm~~~l~~g-a~gaivlVDss~~~~~~-----a~~ii 113 (187)
T COG2229 64 -----------------LDEDTGVHLFGTPGQERF-------KFMWEILSRG-AVGAIVLVDSSRPITFH-----AEEII 113 (187)
T ss_pred -----------------EcCcceEEEecCCCcHHH-------HHHHHHHhCC-cceEEEEEecCCCcchH-----HHHHH
Confidence 124478899999999987 4555555433 68899999998766541 13445
Q ss_pred HHHhhcc-CCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 225 SILYKTR-LPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 225 ~~l~~~~-~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
.++...+ +|++|++||.|+....-...+.+.+.. . ....++|+++|..++|..+
T Consensus 114 ~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~------------------------~-~~~~~vi~~~a~e~~~~~~ 168 (187)
T COG2229 114 DFLTSRNPIPVVVAINKQDLFDALPPEKIREALKL------------------------E-LLSVPVIEIDATEGEGARD 168 (187)
T ss_pred HHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHh------------------------c-cCCCceeeeecccchhHHH
Confidence 5556566 999999999999986544344443331 0 0257899999999999999
Q ss_pred HHHHHHHH
Q 014354 304 YFKAVEES 311 (426)
Q Consensus 304 l~~~l~~~ 311 (426)
.+..+...
T Consensus 169 ~L~~ll~~ 176 (187)
T COG2229 169 QLDVLLLK 176 (187)
T ss_pred HHHHHHhh
Confidence 88877654
No 254
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.40 E-value=3.8e-12 Score=110.63 Aligned_cols=163 Identities=19% Similarity=0.245 Sum_probs=99.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+-.+|.|+|..||||||++++|.+..... .+| +-.+.+ .++.
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~--------i~p-------t~gf~I----------------------ktl~- 56 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDT--------ISP-------TLGFQI----------------------KTLE- 56 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccc--------cCC-------ccceee----------------------EEEE-
Confidence 45789999999999999999999986321 111 111111 1111
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
.+++++.+||--|+.... .....+| +..|.+|||||++....-+.-.......+..-
T Consensus 57 ---------------~~~~~L~iwDvGGq~~lr------~~W~nYf--estdglIwvvDssD~~r~~e~~~~L~~lL~ee 113 (185)
T KOG0073|consen 57 ---------------YKGYTLNIWDVGGQKTLR------SYWKNYF--ESTDGLIWVVDSSDRMRMQECKQELTELLVEE 113 (185)
T ss_pred ---------------ecceEEEEEEcCCcchhH------HHHHHhh--hccCeEEEEEECchHHHHHHHHHHHHHHHhhh
Confidence 366899999999995531 1122233 23589999999954332222111111111112
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh--hcCCceEEeecccCCCHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~vv~vSA~~g~gv~~l~ 305 (426)
+-.+.|++|+.||.|+...-....+...+. +++. -...+++.+||.+|+++.+=+
T Consensus 114 rlaG~~~Lvlank~dl~~~l~~~~i~~~~~-----------------------L~~l~ks~~~~l~~cs~~tge~l~~gi 170 (185)
T KOG0073|consen 114 RLAGAPLLVLANKQDLPGALSLEEISKALD-----------------------LEELAKSHHWRLVKCSAVTGEDLLEGI 170 (185)
T ss_pred hhcCCceEEEEecCcCccccCHHHHHHhhC-----------------------HHHhccccCceEEEEeccccccHHHHH
Confidence 245689999999999985422222221111 0111 235789999999999999988
Q ss_pred HHHHHHHHH
Q 014354 306 KAVEESAQE 314 (426)
Q Consensus 306 ~~l~~~~~~ 314 (426)
+||+..+-+
T Consensus 171 dWL~~~l~~ 179 (185)
T KOG0073|consen 171 DWLCDDLMS 179 (185)
T ss_pred HHHHHHHHH
Confidence 998876655
No 255
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.39 E-value=1.9e-12 Score=121.03 Aligned_cols=147 Identities=15% Similarity=0.156 Sum_probs=110.6
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-----ccccccc----------ccccc----
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-----AVMTLPF----------AANID---- 119 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-----~v~~~~~----------~t~i~---- 119 (426)
..+.+....++.+|+|+|++|||||||||.|.|...+..+.+.+.+... ....+.+ -.|+.
T Consensus 19 l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~ 98 (248)
T COG1116 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLE 98 (248)
T ss_pred eccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhh
Confidence 6677778889999999999999999999999999999888877655421 1111111 11111
Q ss_pred hh------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC-CcccccchhchHHHHHHH
Q 014354 120 IR------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWSASGAIITEA 192 (426)
Q Consensus 120 ~r------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e~~~~~~~~~~l~~~ 192 (426)
++ ..-+..+.++.+|+.....-... .+|+||+|++++|+++..+++++++|.| |-.+..++..+...+.+.
T Consensus 99 ~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~--qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~l 176 (248)
T COG1116 99 LRGKSKAEARERAKELLELVGLAGFEDKYPH--QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRL 176 (248)
T ss_pred ccccchHhHHHHHHHHHHHcCCcchhhcCcc--ccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHH
Confidence 11 11246778999999877666554 6899999999999999999999999999 888887888888888888
Q ss_pred HHhcCCcEEEEEEeC
Q 014354 193 FASTFPTVVTYVVDT 207 (426)
Q Consensus 193 ~~~~~~d~vl~VVDa 207 (426)
+......++++-.|.
T Consensus 177 w~~~~~TvllVTHdi 191 (248)
T COG1116 177 WEETRKTVLLVTHDV 191 (248)
T ss_pred HHhhCCEEEEEeCCH
Confidence 877665555554444
No 256
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.4e-12 Score=117.99 Aligned_cols=162 Identities=20% Similarity=0.189 Sum_probs=97.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
-...++|+++|.+|+|||-||.+++...+...-+..|. |.-...+..++
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIG-----vef~t~t~~vd-------------------------- 59 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIG-----VEFATRTVNVD-------------------------- 59 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCccccccee-----EEEEeeceeec--------------------------
Confidence 34668899999999999999999999988754332221 11101000000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
.+-...+||||+|++++. .....+++ .+..+++|-|.++..+- . ++..++.
T Consensus 60 -----------------~k~vkaqIWDTAGQERyr------AitSaYYr--gAvGAllVYDITr~~Tf---e-nv~rWL~ 110 (222)
T KOG0087|consen 60 -----------------GKTVKAQIWDTAGQERYR------AITSAYYR--GAVGALLVYDITRRQTF---E-NVERWLK 110 (222)
T ss_pred -----------------CcEEEEeeecccchhhhc------cccchhhc--ccceeEEEEechhHHHH---H-HHHHHHH
Confidence 233677999999998872 11122222 24566777777654332 2 1222333
Q ss_pred HHh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354 226 ILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 226 ~l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~ 302 (426)
.++ ..+++++||.||+||...+.+. .++-+.+. + .....++.+||+.+++|.
T Consensus 111 ELRdhad~nivimLvGNK~DL~~lraV~--te~~k~~A----------------------e-~~~l~f~EtSAl~~tNVe 165 (222)
T KOG0087|consen 111 ELRDHADSNIVIMLVGNKSDLNHLRAVP--TEDGKAFA----------------------E-KEGLFFLETSALDATNVE 165 (222)
T ss_pred HHHhcCCCCeEEEEeecchhhhhccccc--hhhhHhHH----------------------H-hcCceEEEecccccccHH
Confidence 333 5689999999999998743211 01111111 1 123568999999999999
Q ss_pred HHHHHHHHHH
Q 014354 303 AYFKAVEESA 312 (426)
Q Consensus 303 ~l~~~l~~~~ 312 (426)
..|..+...+
T Consensus 166 ~aF~~~l~~I 175 (222)
T KOG0087|consen 166 KAFERVLTEI 175 (222)
T ss_pred HHHHHHHHHH
Confidence 9886555433
No 257
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.37 E-value=1.5e-11 Score=116.06 Aligned_cols=185 Identities=17% Similarity=0.237 Sum_probs=105.5
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (426)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~ 144 (426)
....+..|.|+|..|+|||||+|+|.+..... ++..+.++.+..+.+.
T Consensus 35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~------------v~~vg~~t~~~~~~~~-------------------- 82 (296)
T COG3596 35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKE------------VSKVGVGTDITTRLRL-------------------- 82 (296)
T ss_pred cccCceeEEEecCCCCcHHHHHHHHHhccCce------------eeecccCCCchhhHHh--------------------
Confidence 35567788899999999999999999654331 3222222211111111
Q ss_pred cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCCCCC--chhhhhhHH
Q 014354 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNML 221 (426)
Q Consensus 145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~~~~--~~~~~~~~l 221 (426)
...+.-++||||||+.+..... .....+.+++ ...|++++++++....- +..|+....
T Consensus 83 -----------------~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l--~~~DLvL~l~~~~draL~~d~~f~~dVi 143 (296)
T COG3596 83 -----------------SYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL--PKLDLVLWLIKADDRALGTDEDFLRDVI 143 (296)
T ss_pred -----------------hccccceEEecCCCcccchhhhHHHHHHHHHHh--hhccEEEEeccCCCccccCCHHHHHHHH
Confidence 0233678999999998852111 1122233333 23589999999865432 234443322
Q ss_pred HHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhh-cCCceEEeecccCCC
Q 014354 222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAG 300 (426)
Q Consensus 222 ~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~vv~vSA~~g~g 300 (426)
......|+++|+|.+|+..+-. .|...-.... .....+.+.....+..++ .-.|++.+|+..++|
T Consensus 144 -----~~~~~~~~i~~VtQ~D~a~p~~--~W~~~~~~p~-------~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wg 209 (296)
T COG3596 144 -----ILGLDKRVLFVVTQADRAEPGR--EWDSAGHQPS-------PAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWG 209 (296)
T ss_pred -----HhccCceeEEEEehhhhhcccc--ccccccCCCC-------HHHHHHHHHHHHHHHHHHhhcCCeEEeccccCcc
Confidence 2234589999999999887631 1110000000 001111111122222222 235789999999999
Q ss_pred HHHHHHHHHHHHHH
Q 014354 301 IEAYFKAVEESAQE 314 (426)
Q Consensus 301 v~~l~~~l~~~~~~ 314 (426)
+..|..++..++|.
T Consensus 210 l~~l~~ali~~lp~ 223 (296)
T COG3596 210 LKELVRALITALPV 223 (296)
T ss_pred HHHHHHHHHHhCcc
Confidence 99999999998775
No 258
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.36 E-value=3.4e-12 Score=141.73 Aligned_cols=132 Identities=23% Similarity=0.355 Sum_probs=80.4
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~ 245 (426)
+.+.||||||+..+.. +. ......+|++++|+|+..++.++++. .+..+...++|+|+|+||+|+..
T Consensus 526 p~i~fiDTPGhe~F~~-------lr-~~g~~~aDivlLVVDa~~Gi~~qT~e-----~I~~lk~~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 526 PGLLFIDTPGHEAFTS-------LR-KRGGSLADLAVLVVDINEGFKPQTIE-----AINILRQYKTPFVVAANKIDLIP 592 (1049)
T ss_pred CcEEEEECCCcHHHHH-------HH-HhhcccCCEEEEEEECcccCCHhHHH-----HHHHHHHcCCCEEEEEECCCCcc
Confidence 5799999999866521 11 11224589999999999888776643 34456667899999999999975
Q ss_pred hHh-------HHHHHHH----HHHHHHHhccccchhhhHHHHhhh------hHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354 246 HEF-------ALEWMQD----FEVFQAAISSDHSYTSTLTNSLSL------ALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (426)
Q Consensus 246 ~~~-------~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~~vv~vSA~~g~gv~~l~~~l 308 (426)
... ...+... +..+...+.. ....+ ...+. ...+|+..+++|+|||++|+|+++|+.+|
T Consensus 593 ~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~---v~~~L-~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l 668 (1049)
T PRK14845 593 GWNISEDEPFLLNFNEQDQHALTELEIKLYE---LIGKL-YELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMV 668 (1049)
T ss_pred ccccccchhhhhhhhhhHHHHHHHHHHHHHH---HhhHH-HhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHH
Confidence 321 0111100 0111000000 00000 11111 12456678899999999999999999888
Q ss_pred HHHHHH
Q 014354 309 EESAQE 314 (426)
Q Consensus 309 ~~~~~~ 314 (426)
....+.
T Consensus 669 ~~l~~~ 674 (1049)
T PRK14845 669 AGLAQK 674 (1049)
T ss_pred HHhhHH
Confidence 765443
No 259
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.36 E-value=1.3e-12 Score=130.40 Aligned_cols=181 Identities=19% Similarity=0.268 Sum_probs=112.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+.+...|+-+-..|||||..+|+..... ++ .|. .-.+++..+.+....||.-...
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~-------------~~---------~Re--m~~Q~LDsMdiERERGITIKaq 62 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGG-------------LS---------ERE--MRAQVLDSMDIERERGITIKAQ 62 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcC-------------cC---------hHH--HHHHhhhhhhhHhhcCceEEee
Confidence 35567889999999999999999987532 11 111 1122333333333344432211
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
... +.+. ...+..+.+.|||||||.+|.+ .+.+.+ +.|.-+++||||+.|...++.. -+-+
T Consensus 63 ~v~--l~Yk----~~~g~~Y~lnlIDTPGHVDFsY------EVSRSL--AACEGalLvVDAsQGveAQTlA-----N~Yl 123 (603)
T COG0481 63 AVR--LNYK----AKDGETYVLNLIDTPGHVDFSY------EVSRSL--AACEGALLVVDASQGVEAQTLA-----NVYL 123 (603)
T ss_pred EEE--EEEE----eCCCCEEEEEEcCCCCccceEE------EehhhH--hhCCCcEEEEECccchHHHHHH-----HHHH
Confidence 000 0000 0002447788999999999843 222222 3367899999999999988733 2223
Q ss_pred HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
....+.-+|-|+||+|+...+- .+..+.++.... ......+.+||++|.||+++++
T Consensus 124 Ale~~LeIiPViNKIDLP~Adp-ervk~eIe~~iG-----------------------id~~dav~~SAKtG~gI~~iLe 179 (603)
T COG0481 124 ALENNLEIIPVLNKIDLPAADP-ERVKQEIEDIIG-----------------------IDASDAVLVSAKTGIGIEDVLE 179 (603)
T ss_pred HHHcCcEEEEeeecccCCCCCH-HHHHHHHHHHhC-----------------------CCcchheeEecccCCCHHHHHH
Confidence 4456788899999999987531 123333332211 1234689999999999999999
Q ss_pred HHHHHHHH
Q 014354 307 AVEESAQE 314 (426)
Q Consensus 307 ~l~~~~~~ 314 (426)
+|...+|.
T Consensus 180 ~Iv~~iP~ 187 (603)
T COG0481 180 AIVEKIPP 187 (603)
T ss_pred HHHhhCCC
Confidence 99999876
No 260
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.36 E-value=8.3e-12 Score=124.48 Aligned_cols=183 Identities=17% Similarity=0.204 Sum_probs=111.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
....|+||-+...|||||+..|+.+.-. ... ...+ .+.+|..=.+....||..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGt-------------f~~---~e~v-------~ERvMDSnDlEkERGITI---- 56 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGT-------------FRE---REEV-------AERVMDSNDLEKERGITI---- 56 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccc-------------ccc---ccch-------hhhhcCccchhhhcCcEE----
Confidence 4467999999999999999999987421 100 0000 011222112222233321
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
|++.. ...++++.+.|+|||||.+|. ..-..++.+ .|.++++|||..|.-+++ .+.+...
T Consensus 57 LaKnT-------av~~~~~~INIvDTPGHADFG---GEVERvl~M-----VDgvlLlVDA~EGpMPQT-----rFVlkKA 116 (603)
T COG1217 57 LAKNT-------AVNYNGTRINIVDTPGHADFG---GEVERVLSM-----VDGVLLLVDASEGPMPQT-----RFVLKKA 116 (603)
T ss_pred Eeccc-------eeecCCeEEEEecCCCcCCcc---chhhhhhhh-----cceEEEEEEcccCCCCch-----hhhHHHH
Confidence 11110 001467899999999999972 222223322 489999999999999987 5566777
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC--------
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA-------- 299 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~-------- 299 (426)
...+++-|+|+||+|+...+-..-+-+.+..|... +.. .-.-..|++..||+.|.
T Consensus 117 l~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L---------------~A~--deQLdFPivYAS~~~G~a~~~~~~~ 179 (603)
T COG1217 117 LALGLKPIVVINKIDRPDARPDEVVDEVFDLFVEL---------------GAT--DEQLDFPIVYASARNGTASLDPEDE 179 (603)
T ss_pred HHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHh---------------CCC--hhhCCCcEEEeeccCceeccCcccc
Confidence 78899999999999998753221111122211111 000 00123689999999876
Q ss_pred --CHHHHHHHHHHHHHH
Q 014354 300 --GIEAYFKAVEESAQE 314 (426)
Q Consensus 300 --gv~~l~~~l~~~~~~ 314 (426)
.+.-||+.|.++.|.
T Consensus 180 ~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 180 ADDMAPLFETILDHVPA 196 (603)
T ss_pred ccchhHHHHHHHHhCCC
Confidence 567778888777665
No 261
>PRK12740 elongation factor G; Reviewed
Probab=99.36 E-value=6.2e-12 Score=136.65 Aligned_cols=70 Identities=23% Similarity=0.236 Sum_probs=49.7
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl 243 (426)
+++++.||||||+.++. ..+...+ ..+|++++|+|+..+..... ...+..+...++|.++|+||+|+
T Consensus 58 ~~~~i~liDtPG~~~~~------~~~~~~l--~~aD~vllvvd~~~~~~~~~-----~~~~~~~~~~~~p~iiv~NK~D~ 124 (668)
T PRK12740 58 KGHKINLIDTPGHVDFT------GEVERAL--RVLDGAVVVVCAVGGVEPQT-----ETVWRQAEKYGVPRIIFVNKMDR 124 (668)
T ss_pred CCEEEEEEECCCcHHHH------HHHHHHH--HHhCeEEEEEeCCCCcCHHH-----HHHHHHHHHcCCCEEEEEECCCC
Confidence 56899999999997641 1222222 34799999999988765443 22334455678999999999998
Q ss_pred CCh
Q 014354 244 AQH 246 (426)
Q Consensus 244 ~~~ 246 (426)
...
T Consensus 125 ~~~ 127 (668)
T PRK12740 125 AGA 127 (668)
T ss_pred CCC
Confidence 864
No 262
>PTZ00258 GTP-binding protein; Provisional
Probab=99.36 E-value=1.2e-11 Score=124.64 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=62.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.....|+|+|.||||||||+|+|++... .++++|++| + .||-|++..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-------------~v~n~pftT----i--------------~p~~g~v~~-- 65 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-------------PAENFPFCT----I--------------DPNTARVNV-- 65 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcc-------------cccCCCCCc----c--------------cceEEEEec--
Confidence 4567899999999999999999988763 267778776 1 222333321
Q ss_pred cccccHHHHHHHHH-HHhcCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCC
Q 014354 147 LFTTKFDEVISLIE-RRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTP 208 (426)
Q Consensus 147 ~ls~~~~~~~~~~~-~~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~ 208 (426)
....++.+..... ...-..++.|+||||+...... ..++..+...+ ..+|++++|||++
T Consensus 66 -~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~I--r~aD~il~VVd~f 126 (390)
T PTZ00258 66 -PDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHI--RAVDGIYHVVRAF 126 (390)
T ss_pred -ccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHH--HHCCEEEEEEeCC
Confidence 0011111111110 0011357999999999864321 11333333322 4479999999986
No 263
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.4e-11 Score=122.05 Aligned_cols=108 Identities=16% Similarity=0.283 Sum_probs=66.5
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCC-------CCchhhhhhHHHHHHHHhhccCC-eE
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRS-------ANPMTFMSNMLYACSILYKTRLP-LV 235 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~-------~~~~~~~~~~l~~~~~l~~~~~P-~I 235 (426)
.+.+.|+|+|||.++ +..+... ..+|++|+|||+..+ ...++.. .+-+.+-.++. .|
T Consensus 84 k~~~tIiDaPGHrdF---------vknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-----H~~La~tlGi~~lI 149 (428)
T COG5256 84 KYNFTIIDAPGHRDF---------VKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE-----HAFLARTLGIKQLI 149 (428)
T ss_pred CceEEEeeCCchHHH---------HHHhhcchhhccEEEEEEECCCCccccccccCCchhH-----HHHHHHhcCCceEE
Confidence 467899999998665 2233322 347999999999987 5555533 22223344444 57
Q ss_pred EEEecCCCCChH--hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhh-cCCceEEeecccCCCHHHHH
Q 014354 236 LAFNKTDVAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 236 lVlNKiDl~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~vv~vSA~~g~gv~~l~ 305 (426)
+++||+|.++-. +..++...+..|. +..+ |. ..+++|||||.+|.|+.+.-
T Consensus 150 VavNKMD~v~wde~rf~ei~~~v~~l~--------------k~~G-----~~~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 150 VAVNKMDLVSWDEERFEEIVSEVSKLL--------------KMVG-----YNPKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred EEEEcccccccCHHHHHHHHHHHHHHH--------------HHcC-----CCccCCeEEecccccCCcccccC
Confidence 789999999732 2222222222211 1111 11 24789999999999987653
No 264
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=7.8e-12 Score=106.85 Aligned_cols=160 Identities=18% Similarity=0.220 Sum_probs=97.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
-.++|+++|..|+|||.|++++++..++.|....| +.|--+ .+. .
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgati-gvdfmi----ktv-----------------------------e- 50 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATI-GVDFMI----KTV-----------------------------E- 50 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCcee-eeeEEE----EEE-----------------------------E-
Confidence 35789999999999999999999998886543322 111100 000 0
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCC--CCCch-hhhhhHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPM-TFMSNMLYAC 224 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~--~~~~~-~~~~~~l~~~ 224 (426)
..+....++||||+|+.++. .+...+++++ +.+++|-|.+. .++-. +|+.. .
T Consensus 51 -------------v~gekiklqiwdtagqerfr------sitqsyyrsa--halilvydiscqpsfdclpewlre----i 105 (213)
T KOG0095|consen 51 -------------VNGEKIKLQIWDTAGQERFR------SITQSYYRSA--HALILVYDISCQPSFDCLPEWLRE----I 105 (213)
T ss_pred -------------ECCeEEEEEEeeccchHHHH------HHHHHHhhhc--ceEEEEEecccCcchhhhHHHHHH----H
Confidence 01345789999999998872 2333345555 45555555543 33222 23222 2
Q ss_pred HHHhhccCCeEEEEecCCCCChHhHH-HHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 225 SILYKTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
.......+-.|+|.||+|+...+++. .+-+++.. . .+.-++.+||+..++|+.
T Consensus 106 e~yan~kvlkilvgnk~d~~drrevp~qigeefs~---------------------~-----qdmyfletsakea~nve~ 159 (213)
T KOG0095|consen 106 EQYANNKVLKILVGNKIDLADRREVPQQIGEEFSE---------------------A-----QDMYFLETSAKEADNVEK 159 (213)
T ss_pred HHHhhcceEEEeeccccchhhhhhhhHHHHHHHHH---------------------h-----hhhhhhhhcccchhhHHH
Confidence 22334456679999999998875432 22222221 1 112267899999999999
Q ss_pred HHHHHHHHHH
Q 014354 304 YFKAVEESAQ 313 (426)
Q Consensus 304 l~~~l~~~~~ 313 (426)
||..+.-.+.
T Consensus 160 lf~~~a~rli 169 (213)
T KOG0095|consen 160 LFLDLACRLI 169 (213)
T ss_pred HHHHHHHHHH
Confidence 9877765443
No 265
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=4.2e-11 Score=115.41 Aligned_cols=178 Identities=22% Similarity=0.241 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
..++|+|+..||||||.++|...... .+....|+.+. .|+.-..|..|-.....
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~ST-----------aAFDk~pqS~e---------------RgiTLDLGFS~~~v~~p 61 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGST-----------AAFDKHPQSTE---------------RGITLDLGFSTMTVLSP 61 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccc-----------hhhccCCcccc---------------cceeEeecceeeecccc
Confidence 68999999999999999999765311 12333333321 00000011111100111
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHH-H-hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF-A-STFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~-~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
..+- .+...++.++|.||+.. +++.+ . +.--|+.++|||+..|...++- .++-+-
T Consensus 62 arLp--------q~e~lq~tlvDCPGHas----------LIRtiiggaqiiDlm~lviDv~kG~QtQtA-----EcLiig 118 (522)
T KOG0461|consen 62 ARLP--------QGEQLQFTLVDCPGHAS----------LIRTIIGGAQIIDLMILVIDVQKGKQTQTA-----ECLIIG 118 (522)
T ss_pred cccC--------ccccceeEEEeCCCcHH----------HHHHHHhhhheeeeeeEEEehhcccccccc-----hhhhhh
Confidence 1111 13557899999999843 23322 2 2336999999999999887652 122111
Q ss_pred hhccCCeEEEEecCCCCChHhHH-HHHHHHHHHHHHhccccchhhhHHHHhhhhHh--hhhcCCceEEeecccC----CC
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALD--EFYKNLKSVGVSSVSG----AG 300 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~vv~vSA~~g----~g 300 (426)
...-...|+|+||+|........ .+-+..+.+ .+.++ .|.++.|++++||+.| ++
T Consensus 119 ~~~c~klvvvinkid~lpE~qr~ski~k~~kk~------------------~KtLe~t~f~g~~PI~~vsa~~G~~~~~~ 180 (522)
T KOG0461|consen 119 ELLCKKLVVVINKIDVLPENQRASKIEKSAKKV------------------RKTLESTGFDGNSPIVEVSAADGYFKEEM 180 (522)
T ss_pred hhhccceEEEEeccccccchhhhhHHHHHHHHH------------------HHHHHhcCcCCCCceeEEecCCCccchhH
Confidence 12234568999999998764322 222111112 22221 4567799999999999 89
Q ss_pred HHHHHHHHHHHHHH
Q 014354 301 IEAYFKAVEESAQE 314 (426)
Q Consensus 301 v~~l~~~l~~~~~~ 314 (426)
+.+|.++|...+.+
T Consensus 181 i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 181 IQELKEALESRIFE 194 (522)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999988877544
No 266
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.30 E-value=6.2e-12 Score=108.84 Aligned_cols=167 Identities=17% Similarity=0.185 Sum_probs=98.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
..++|+|||.+|+||||||-+++...+.....+. ++.|-.+-.+.
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~t-IGvDFkvk~m~---------------------------------- 54 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTT-IGVDFKVKVMQ---------------------------------- 54 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCce-eeeeEEEEEEE----------------------------------
Confidence 4578999999999999999999998766433221 12221110000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCC--CCCchhhhhhHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACS 225 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~--~~~~~~~~~~~l~~~~ 225 (426)
...+...+-||||+|++++.+... .+++. +--+|+|-|.+. .+...+.|...+ +
T Consensus 55 -------------vdg~~~KlaiWDTAGqErFRtLTp------SyyRg--aqGiIlVYDVT~Rdtf~kLd~W~~El---d 110 (209)
T KOG0080|consen 55 -------------VDGKRLKLAIWDTAGQERFRTLTP------SYYRG--AQGIILVYDVTSRDTFVKLDIWLKEL---D 110 (209)
T ss_pred -------------EcCceEEEEEEeccchHhhhccCH------hHhcc--CceeEEEEEccchhhHHhHHHHHHHH---H
Confidence 013457899999999998732111 12222 345555666543 333333332221 1
Q ss_pred H-HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 226 I-LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 226 ~-l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
. .-..++-.++|.||+|..+.+.+.+- + ...+++.+ ..-++.+||++.+||...
T Consensus 111 ~Ystn~diikmlVgNKiDkes~R~V~re----E------------G~kfAr~h---------~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 111 LYSTNPDIIKMLVGNKIDKESERVVDRE----E------------GLKFARKH---------RCLFIECSAKTRENVQCC 165 (209)
T ss_pred hhcCCccHhHhhhcccccchhcccccHH----H------------HHHHHHhh---------CcEEEEcchhhhccHHHH
Confidence 1 11345666889999997654322100 0 11122222 245889999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 014354 305 FKAVEESAQEFMET 318 (426)
Q Consensus 305 ~~~l~~~~~~~~~~ 318 (426)
|+.+...+.+.+..
T Consensus 166 FeelveKIi~tp~l 179 (209)
T KOG0080|consen 166 FEELVEKIIETPSL 179 (209)
T ss_pred HHHHHHHHhcCcch
Confidence 99999888775543
No 267
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.28 E-value=5.3e-11 Score=112.66 Aligned_cols=115 Identities=15% Similarity=0.186 Sum_probs=87.2
Q ss_pred CCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC-------ccccccccccccc-----------
Q 014354 58 AGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD-------PAVMTLPFAANID----------- 119 (426)
Q Consensus 58 ~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d-------~~v~~~~~~t~i~----------- 119 (426)
...+.+....++.+++|+||+|||||||++.|+|...+..+.+.+.+.. -.+.++|+...++
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V 98 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVV 98 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHH
Confidence 3666777778889999999999999999999999888888877766543 1244445543332
Q ss_pred ---------------hhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 120 ---------------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 120 ---------------~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
-.+...++++++.+|+.....-. +..||+|+.|++.+|+++..+++++++|.|
T Consensus 99 ~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~--i~~LSGGQ~QRV~lARAL~~~p~lllLDEP 166 (254)
T COG1121 99 LLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQ--IGELSGGQKQRVLLARALAQNPDLLLLDEP 166 (254)
T ss_pred HccCcccccccccccHHHHHHHHHHHHHcCchhhhCCc--ccccCcHHHHHHHHHHHhccCCCEEEecCC
Confidence 01234567788888887543322 235899999999999999999999999999
No 268
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.28 E-value=9.1e-11 Score=111.19 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=52.4
Q ss_pred CCCEEEEcCCCcccccchh---chHHHHHHHH---HhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEE
Q 014354 165 HLDYVLVDTPGQIEIFTWS---ASGAIITEAF---ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAF 238 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~---~~~~~l~~~~---~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVl 238 (426)
.+++.||||||+....... .....+.+.. -....+++++|+|+...+...+. +.+.+.+...+.|+|+|+
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~----l~ia~~ld~~~~rti~Vi 199 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA----LKLAKEVDPQGERTIGVI 199 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH----HHHHHHHHHcCCcEEEEE
Confidence 3799999999996431111 1122222222 22345799999999887766541 344555667889999999
Q ss_pred ecCCCCChH
Q 014354 239 NKTDVAQHE 247 (426)
Q Consensus 239 NKiDl~~~~ 247 (426)
||+|...+.
T Consensus 200 TK~D~~~~~ 208 (240)
T smart00053 200 TKLDLMDEG 208 (240)
T ss_pred ECCCCCCcc
Confidence 999998754
No 269
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.28 E-value=1.2e-11 Score=105.74 Aligned_cols=159 Identities=20% Similarity=0.302 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
+..+|+|.||+|||+|+.++....++.++.. .++.|-.+-..+ + +
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYit-TiGvDfkirTv~------i-----------------~----------- 53 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYIT-TIGVDFKIRTVD------I-----------------N----------- 53 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEE-EeeeeEEEEEee------c-----------------C-----------
Confidence 4568999999999999999998877654332 222221111000 0 0
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCC--chh-hhhhHHHHHHH
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMT-FMSNMLYACSI 226 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~--~~~-~~~~~l~~~~~ 226 (426)
+..+.++||||+|++.+. .+...+++. .+.+++|-|.+++.+ ... |+..+...
T Consensus 54 -------------G~~VkLqIwDtAGqErFr------titstyyrg--thgv~vVYDVTn~ESF~Nv~rWLeei~~n--- 109 (198)
T KOG0079|consen 54 -------------GDRVKLQIWDTAGQERFR------TITSTYYRG--THGVIVVYDVTNGESFNNVKRWLEEIRNN--- 109 (198)
T ss_pred -------------CcEEEEEEeecccHHHHH------HHHHHHccC--CceEEEEEECcchhhhHhHHHHHHHHHhc---
Confidence 234789999999998872 222333333 356666667665543 322 22221111
Q ss_pred HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
-..+|-|||.||.|......+.. ++.+.+ +. .-....|.+||+...+++..|.
T Consensus 110 --cdsv~~vLVGNK~d~~~RrvV~t--~dAr~~--------------A~---------~mgie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 110 --CDSVPKVLVGNKNDDPERRVVDT--EDARAF--------------AL---------QMGIELFETSAKENENVEAMFH 162 (198)
T ss_pred --CccccceecccCCCCccceeeeh--HHHHHH--------------HH---------hcCchheehhhhhcccchHHHH
Confidence 12578899999999887643211 111110 11 1246689999999999999999
Q ss_pred HHHHHHHH
Q 014354 307 AVEESAQE 314 (426)
Q Consensus 307 ~l~~~~~~ 314 (426)
.|.+....
T Consensus 163 cit~qvl~ 170 (198)
T KOG0079|consen 163 CITKQVLQ 170 (198)
T ss_pred HHHHHHHH
Confidence 88876554
No 270
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.27 E-value=3.2e-11 Score=117.13 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=36.7
Q ss_pred CCcEEEEEEeCCC-CCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHH
Q 014354 197 FPTVVTYVVDTPR-SANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFE 257 (426)
Q Consensus 197 ~~d~vl~VVDa~~-~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~ 257 (426)
.+++++|++++.. ++.+.+ +..+..+.. .+|+|+|+||+|+....++....+.+.
T Consensus 114 rvh~~ly~i~~~~~~l~~~D-----~~~lk~l~~-~v~vi~VinK~D~l~~~e~~~~k~~i~ 169 (276)
T cd01850 114 RVHACLYFIEPTGHGLKPLD-----IEFMKRLSK-RVNIIPVIAKADTLTPEELKEFKQRIM 169 (276)
T ss_pred ceEEEEEEEeCCCCCCCHHH-----HHHHHHHhc-cCCEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4789999999764 444433 223344443 799999999999988765544444443
No 271
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.27 E-value=3.1e-11 Score=116.94 Aligned_cols=178 Identities=20% Similarity=0.315 Sum_probs=101.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC-ccc--ccccccc---ccchhhhHHHHHHHHHcCCCCCCC
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD-PAV--MTLPFAA---NIDIRDTIRYKEVMKQFNLGPNGG 140 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d-~~v--~~~~~~t---~i~~r~~~~~~~~~~~~~l~~ng~ 140 (426)
+...+.+-+|...-|||||+.+|+....+.-. .- ..+ ......+ .++..- ++.-+.-....|
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~e------DQla~l~~dS~~~~t~g~~~D~AL------LvDGL~AEREQG 71 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYE------DQLASLERDSKRKGTQGEKIDLAL------LVDGLEAEREQG 71 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhH------HHHHHHhcccccccCCCCccchhh------hhhhhHHHHhcC
Confidence 34567899999999999999999987644310 00 000 0000011 111000 000000000123
Q ss_pred cc--cccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhh
Q 014354 141 IL--TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMS 218 (426)
Q Consensus 141 i~--~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~ 218 (426)
|. ...++|++ .+.++++.|||||..+-.....|. .-||++|++||+..++-.++...
T Consensus 72 ITIDVAYRyFsT-------------~KRkFIiADTPGHeQYTRNMaTGA--------STadlAIlLVDAR~Gvl~QTrRH 130 (431)
T COG2895 72 ITIDVAYRYFST-------------EKRKFIIADTPGHEQYTRNMATGA--------STADLAILLVDARKGVLEQTRRH 130 (431)
T ss_pred ceEEEEeeeccc-------------ccceEEEecCCcHHHHhhhhhccc--------ccccEEEEEEecchhhHHHhHHH
Confidence 32 12244443 447899999999987632221111 34799999999999988776433
Q ss_pred hHHHHHHHHhhccCC-eEEEEecCCCCChH--hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeec
Q 014354 219 NMLYACSILYKTRLP-LVLAFNKTDVAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSS 295 (426)
Q Consensus 219 ~~l~~~~~l~~~~~P-~IlVlNKiDl~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA 295 (426)
. +++ .-.++. +|+++||||++... ....+..++..|...+ + .....+||+||
T Consensus 131 s--~I~---sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L--------------~------~~~~~~IPiSA 185 (431)
T COG2895 131 S--FIA---SLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQL--------------G------LKDVRFIPISA 185 (431)
T ss_pred H--HHH---HHhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHc--------------C------CCcceEEechh
Confidence 2 222 233554 46789999999853 3445666665544432 1 12357999999
Q ss_pred ccCCCHH
Q 014354 296 VSGAGIE 302 (426)
Q Consensus 296 ~~g~gv~ 302 (426)
+.|.||-
T Consensus 186 l~GDNV~ 192 (431)
T COG2895 186 LLGDNVV 192 (431)
T ss_pred ccCCccc
Confidence 9999975
No 272
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.27 E-value=3.6e-11 Score=131.63 Aligned_cols=135 Identities=19% Similarity=0.157 Sum_probs=78.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+.+.|+|+|+.++|||||+++|+.......... .+ .++..|... .-++.|+.-+.+.... .
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~--~g---------~~~~~D~~~------~E~~rgiTi~~~~~~~-~- 79 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEEL--AG---------EQLALDFDE------EEQARGITIKAANVSM-V- 79 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhh--cC---------cceecCccH------HHHHhhhhhhccceEE-E-
Confidence 456899999999999999999997653321110 00 000011000 0011111111111100 0
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
|. . ...++++.||||||+.++. ..+...+ ..+|++|+|||+..+...++ ...+..+
T Consensus 80 ~~--~---------~~~~~~i~liDtPG~~df~------~~~~~~l--~~~D~avlVvda~~g~~~~t-----~~~~~~~ 135 (731)
T PRK07560 80 HE--Y---------EGKEYLINLIDTPGHVDFG------GDVTRAM--RAVDGAIVVVDAVEGVMPQT-----ETVLRQA 135 (731)
T ss_pred EE--e---------cCCcEEEEEEcCCCccChH------HHHHHHH--HhcCEEEEEEECCCCCCccH-----HHHHHHH
Confidence 00 0 0135788999999998852 2222222 34699999999999887765 2344444
Q ss_pred hhccCCeEEEEecCCCCC
Q 014354 228 YKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~ 245 (426)
...+.|.|+++||+|+..
T Consensus 136 ~~~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 136 LRERVKPVLFINKVDRLI 153 (731)
T ss_pred HHcCCCeEEEEECchhhc
Confidence 556789999999999874
No 273
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.26 E-value=4.4e-11 Score=108.19 Aligned_cols=131 Identities=21% Similarity=0.303 Sum_probs=68.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
...|+|+|++|||||+|+.+|....... .++.+. +|.+....
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~-----------T~tS~e-----------------------~n~~~~~~---- 44 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVP-----------TVTSME-----------------------NNIAYNVN---- 44 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS--------------B---SS-----------------------EEEECCGS----
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCC-----------eecccc-----------------------CCceEEee----
Confidence 4679999999999999999999874321 222221 11111110
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHH-HHhcCCcEEEEEEeCCCCCCc----hhhhhhHHHH
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA-FASTFPTVVTYVVDTPRSANP----MTFMSNMLYA 223 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~-~~~~~~d~vl~VVDa~~~~~~----~~~~~~~l~~ 223 (426)
...+..+.+||+|||.+.. ..+.+. .....+-.||||||+...... ..++..++..
T Consensus 45 -------------~~~~~~~~lvD~PGH~rlr------~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~ 105 (181)
T PF09439_consen 45 -------------NSKGKKLRLVDIPGHPRLR------SKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSD 105 (181)
T ss_dssp -------------STCGTCECEEEETT-HCCC------HHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHH
T ss_pred -------------cCCCCEEEEEECCCcHHHH------HHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHh
Confidence 0234688999999997752 223332 122346799999999642211 1222222211
Q ss_pred HHHHhhccCCeEEEEecCCCCChHhHHHHHHHHH
Q 014354 224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFE 257 (426)
Q Consensus 224 ~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~ 257 (426)
.. ......|++|+.||.|+........+...++
T Consensus 106 ~~-~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE 138 (181)
T PF09439_consen 106 TE-VQKNKPPILIACNKQDLFTAKPPKKIKKLLE 138 (181)
T ss_dssp HH-CCTT--EEEEEEE-TTSTT---HHHHHHHHH
T ss_pred hh-hccCCCCEEEEEeCccccccCCHHHHHHHHH
Confidence 11 1245789999999999987543333444333
No 274
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=5.2e-11 Score=102.29 Aligned_cols=162 Identities=19% Similarity=0.297 Sum_probs=96.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
..++++++|+.|+|||.||.+++...+...- ..+-.++...++ +.
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDds--------------sHTiGveFgSrI-----------------in---- 52 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDS--------------SHTIGVEFGSRI-----------------VN---- 52 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccc--------------cceeeeeeccee-----------------ee----
Confidence 4568999999999999999999998765311 011111111111 10
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHH-HHHhcCCcEEEEEEeCC--CCCCchhhhhhHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITE-AFASTFPTVVTYVVDTP--RSANPMTFMSNMLYAC 224 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~-~~~~~~~d~vl~VVDa~--~~~~~~~~~~~~l~~~ 224 (426)
...+...++||||+|+.++ +.+.+ +++.+ .-+++|-|++ ..++..+ +.+.-.
T Consensus 53 -------------VGgK~vKLQIWDTAGQErF-------RSVtRsYYRGA--AGAlLVYD~TsrdsfnaLt---nWL~Da 107 (214)
T KOG0086|consen 53 -------------VGGKTVKLQIWDTAGQERF-------RSVTRSYYRGA--AGALLVYDITSRDSFNALT---NWLTDA 107 (214)
T ss_pred -------------ecCcEEEEEEeecccHHHH-------HHHHHHHhccc--cceEEEEeccchhhHHHHH---HHHHHH
Confidence 0134478999999999887 33333 33333 3344555554 3333322 223334
Q ss_pred HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
+.+...++-+|++.||.|+.....+. +.+.- .++++ ...-+..+||++|++|++-
T Consensus 108 R~lAs~nIvviL~GnKkDL~~~R~Vt-flEAs---------------~FaqE---------nel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 108 RTLASPNIVVILCGNKKDLDPEREVT-FLEAS---------------RFAQE---------NELMFLETSALTGENVEEA 162 (214)
T ss_pred HhhCCCcEEEEEeCChhhcChhhhhh-HHHHH---------------hhhcc---------cceeeeeecccccccHHHH
Confidence 55666777888999999998776432 11110 11111 1235788999999999998
Q ss_pred HHHHHHHHHH
Q 014354 305 FKAVEESAQE 314 (426)
Q Consensus 305 ~~~l~~~~~~ 314 (426)
|-...+.+..
T Consensus 163 Fl~c~~tIl~ 172 (214)
T KOG0086|consen 163 FLKCARTILN 172 (214)
T ss_pred HHHHHHHHHH
Confidence 8666655443
No 275
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.24 E-value=7.5e-11 Score=101.89 Aligned_cols=166 Identities=19% Similarity=0.197 Sum_probs=102.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
-.++++++|..-+|||||+-+.+...+.... .+ | +...-+-+.+++.
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kH----------ls-----T-------lQASF~~kk~n~e----------- 58 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKH----------LS-----T-------LQASFQNKKVNVE----------- 58 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhh----------HH-----H-------HHHHHhhcccccc-----------
Confidence 3478999999999999999999988765321 10 0 0000011111111
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
....++-||||+|+.++ ++++.+.- ..++-+++|.|.+..-+-+. ..+....++.+
T Consensus 59 ---------------d~ra~L~IWDTAGQErf---HALGPIYY-----RgSnGalLVyDITDrdSFqK-VKnWV~Elr~m 114 (218)
T KOG0088|consen 59 ---------------DCRADLHIWDTAGQERF---HALGPIYY-----RGSNGALLVYDITDRDSFQK-VKNWVLELRTM 114 (218)
T ss_pred ---------------cceeeeeeeeccchHhh---hccCceEE-----eCCCceEEEEeccchHHHHH-HHHHHHHHHHH
Confidence 23468999999999987 33333211 23467778888764332221 22223334556
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
.-..+..+||.||+|+.....+. .++.. .++++ ..+.++.+||+.+.||.++|..
T Consensus 115 lGnei~l~IVGNKiDLEeeR~Vt--~qeAe--------------~YAes---------vGA~y~eTSAk~N~Gi~elFe~ 169 (218)
T KOG0088|consen 115 LGNEIELLIVGNKIDLEEERQVT--RQEAE--------------AYAES---------VGALYMETSAKDNVGISELFES 169 (218)
T ss_pred hCCeeEEEEecCcccHHHhhhhh--HHHHH--------------HHHHh---------hchhheecccccccCHHHHHHH
Confidence 66788899999999987655331 11111 11111 1345788999999999999999
Q ss_pred HHHHHHHH
Q 014354 308 VEESAQEF 315 (426)
Q Consensus 308 l~~~~~~~ 315 (426)
|.....+.
T Consensus 170 Lt~~MiE~ 177 (218)
T KOG0088|consen 170 LTAKMIEH 177 (218)
T ss_pred HHHHHHHH
Confidence 98877664
No 276
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.23 E-value=6.6e-10 Score=109.86 Aligned_cols=156 Identities=17% Similarity=0.199 Sum_probs=87.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.++.+++++|++|+||||++..|.+.....++++.+++.|+.-. +. ......+..+.++. ++.. .
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~----~a------~eql~~~a~~~~i~----~~~~-~ 176 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA----AA------IEQLQVWGERVGVP----VIAQ-K 176 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch----hh------HHHHHHHHHHcCce----EEEe-C
Confidence 45789999999999999999999999888888999988875211 00 00011111122211 1110 0
Q ss_pred ccccc-HHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH------hcCCcEEEEEEeCCCCCCchhhhhh
Q 014354 147 LFTTK-FDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA------STFPTVVTYVVDTPRSANPMTFMSN 219 (426)
Q Consensus 147 ~ls~~-~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~------~~~~d~vl~VVDa~~~~~~~~~~~~ 219 (426)
.-... ..-...+..+...+++++||||||.... ...+...+..... ...++-+++|+|+..+.+....
T Consensus 177 ~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~--~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~--- 251 (318)
T PRK10416 177 EGADPASVAFDAIQAAKARGIDVLIIDTAGRLHN--KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQ--- 251 (318)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcC--CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHH---
Confidence 00000 0001123334567899999999998653 1222222222221 2347789999999865433221
Q ss_pred HHHHHHHHhhccCCeEEEEecCCCCCh
Q 014354 220 MLYACSILYKTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 220 ~l~~~~~l~~~~~P~IlVlNKiDl~~~ 246 (426)
.......--+.-+|+||.|....
T Consensus 252 ----a~~f~~~~~~~giIlTKlD~t~~ 274 (318)
T PRK10416 252 ----AKAFHEAVGLTGIILTKLDGTAK 274 (318)
T ss_pred ----HHHHHhhCCCCEEEEECCCCCCC
Confidence 11111122356799999996654
No 277
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.23 E-value=5.8e-11 Score=110.90 Aligned_cols=149 Identities=18% Similarity=0.145 Sum_probs=105.4
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----------------cccccccc---cc
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------------VMTLPFAA---NI 118 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----------------v~~~~~~t---~i 118 (426)
....++....+.+++++|++||||||+|+.|.+...+..+.+.+.+.+.. ..-+|+.| ||
T Consensus 17 v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNI 96 (309)
T COG1125 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENI 96 (309)
T ss_pred eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHH
Confidence 66777888889999999999999999999999998888888888766511 11122221 11
Q ss_pred c----------hhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC-CcccccchhchHH
Q 014354 119 D----------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWSASGA 187 (426)
Q Consensus 119 ~----------~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e~~~~~~~~~ 187 (426)
. -+-.-+++++|..+|+.|..=.-..-+.||+|++|++.+++|+..++.++++|.| |-.++-++..+..
T Consensus 97 a~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~ 176 (309)
T COG1125 97 ATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQE 176 (309)
T ss_pred HhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHH
Confidence 1 1122357889999999985222222246899999999999999999999999999 8888766666655
Q ss_pred HHHHHHHhcCCcEEEEEEeC
Q 014354 188 IITEAFASTFPTVVTYVVDT 207 (426)
Q Consensus 188 ~l~~~~~~~~~d~vl~VVDa 207 (426)
.+.+.-+.....+|++-.|.
T Consensus 177 e~~~lq~~l~kTivfVTHDi 196 (309)
T COG1125 177 EIKELQKELGKTIVFVTHDI 196 (309)
T ss_pred HHHHHHHHhCCEEEEEecCH
Confidence 55554443333444444444
No 278
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.3e-10 Score=99.33 Aligned_cols=162 Identities=15% Similarity=0.177 Sum_probs=99.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..++.|+|...+|||||+-+.++..+... -+..++.+-.+- -+..+
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~a-fvsTvGidFKvK-----------------------------Tvyr~---- 66 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSA-FVSTVGIDFKVK-----------------------------TVYRS---- 66 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccc-eeeeeeeeEEEe-----------------------------Eeeec----
Confidence 45899999999999999999999876542 122222221110 01111
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCc---hhhhhhHHHHHH
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP---MTFMSNMLYACS 225 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~---~~~~~~~l~~~~ 225 (426)
.+..++++|||+|++.+. .....++ ..++.++++.|.++..+- ++|. ....
T Consensus 67 --------------~kRiklQiwDTagqEryr------tiTTayy--RgamgfiLmyDitNeeSf~svqdw~----tqIk 120 (193)
T KOG0093|consen 67 --------------DKRIKLQIWDTAGQERYR------TITTAYY--RGAMGFILMYDITNEESFNSVQDWI----TQIK 120 (193)
T ss_pred --------------ccEEEEEEEecccchhhh------HHHHHHh--hccceEEEEEecCCHHHHHHHHHHH----HHhe
Confidence 234789999999998752 2222233 335788888888653321 1211 1111
Q ss_pred HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
.....+.|+|||.||||+.+.+.+. .+. ...+.+.++ ..++.+||+.+.+|..+|
T Consensus 121 tysw~naqvilvgnKCDmd~eRvis--~e~--------------g~~l~~~LG---------fefFEtSaK~NinVk~~F 175 (193)
T KOG0093|consen 121 TYSWDNAQVILVGNKCDMDSERVIS--HER--------------GRQLADQLG---------FEFFETSAKENINVKQVF 175 (193)
T ss_pred eeeccCceEEEEecccCCccceeee--HHH--------------HHHHHHHhC---------hHHhhhcccccccHHHHH
Confidence 1224689999999999998865321 011 112222333 247789999999999999
Q ss_pred HHHHHHHHHH
Q 014354 306 KAVEESAQEF 315 (426)
Q Consensus 306 ~~l~~~~~~~ 315 (426)
..+...+...
T Consensus 176 e~lv~~Ic~k 185 (193)
T KOG0093|consen 176 ERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHH
Confidence 9888766553
No 279
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=5e-11 Score=127.99 Aligned_cols=136 Identities=19% Similarity=0.162 Sum_probs=92.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCC-cccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGG-ILTS 144 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~-i~~~ 144 (426)
..+.+.|+|+|+..+|||||..+|+-..-..+..+.+........+.++. .+.|+.-..+ +.+.
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~E---------------qeRGITI~saa~s~~ 71 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQE---------------QERGITITSAATTLF 71 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHH---------------HhcCCEEeeeeeEEE
Confidence 34667899999999999999999998765554433333222222222211 1222222111 1221
Q ss_pred cccccccHHHHHHHHHHHhc-CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354 145 LNLFTTKFDEVISLIERRAD-HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (426)
Q Consensus 145 ~~~ls~~~~~~~~~~~~~~~-~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~ 223 (426)
++ ++.+.|||||||.+|. ..+.+.+ .-+|.+|+|+|+..+..+++ .+.
T Consensus 72 ------------------~~~~~~iNlIDTPGHVDFt------~EV~rsl--rvlDgavvVvdaveGV~~QT-----Etv 120 (697)
T COG0480 72 ------------------WKGDYRINLIDTPGHVDFT------IEVERSL--RVLDGAVVVVDAVEGVEPQT-----ETV 120 (697)
T ss_pred ------------------EcCceEEEEeCCCCccccH------HHHHHHH--HhhcceEEEEECCCCeeecH-----HHH
Confidence 34 4899999999999972 2233333 23599999999999999987 456
Q ss_pred HHHHhhccCCeEEEEecCCCCChH
Q 014354 224 CSILYKTRLPLVLAFNKTDVAQHE 247 (426)
Q Consensus 224 ~~~l~~~~~P~IlVlNKiDl~~~~ 247 (426)
++.+...++|.|+++||+|+...+
T Consensus 121 ~rqa~~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 121 WRQADKYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred HHHHhhcCCCeEEEEECccccccC
Confidence 777888999999999999998865
No 280
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.22 E-value=1.7e-11 Score=111.97 Aligned_cols=128 Identities=14% Similarity=0.197 Sum_probs=95.1
Q ss_pred HHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccc---------
Q 014354 39 EEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------- 109 (426)
Q Consensus 39 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v--------- 109 (426)
.++.++++...+ ....+....++.+|+|+|++||||||||++|.+.....++.+.|.+.+...
T Consensus 6 ~~l~K~fg~~~V--------Lkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~ 77 (240)
T COG1126 6 KNLSKSFGDKEV--------LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77 (240)
T ss_pred EeeeEEeCCeEE--------ecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHH
Confidence 345556666665 778888889999999999999999999999999999999999887744321
Q ss_pred ---------cccccccccc--------hh------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCC
Q 014354 110 ---------MTLPFAANID--------IR------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHL 166 (426)
Q Consensus 110 ---------~~~~~~t~i~--------~r------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~ 166 (426)
.-+|.-|.++ .+ ..-+..++++++|+......+.. .||+|++|++++|+++..++
T Consensus 78 ~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~--qLSGGQqQRVAIARALaM~P 155 (240)
T COG1126 78 KVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA--QLSGGQQQRVAIARALAMDP 155 (240)
T ss_pred hcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc--ccCcHHHHHHHHHHHHcCCC
Confidence 0112111110 00 01123457889998877665553 68999999999999999999
Q ss_pred CEEEEcCCCc
Q 014354 167 DYVLVDTPGQ 176 (426)
Q Consensus 167 ~~~liDTPGi 176 (426)
++.++|.|-.
T Consensus 156 ~vmLFDEPTS 165 (240)
T COG1126 156 KVMLFDEPTS 165 (240)
T ss_pred CEEeecCCcc
Confidence 9999999964
No 281
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.22 E-value=2.2e-09 Score=109.33 Aligned_cols=155 Identities=18% Similarity=0.176 Sum_probs=89.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCc-cccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGI-LTSL 145 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i-~~~~ 145 (426)
.++.+|+++|++||||||++.+|.......+.++.++..|+.- + ++ .+ .++.++-.. ++ +...
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R---~-aA----~e------QLk~~a~~~--~vp~~~~ 161 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR---A-GA----FD------QLKQNATKA--RIPFYGS 161 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc---h-hH----HH------HHHHHhhcc--CCeEEee
Confidence 4567999999999999999999998877777889998877521 1 11 11 111111111 11 0100
Q ss_pred ccccccHHHHH-HHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 146 NLFTTKFDEVI-SLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 146 ~~ls~~~~~~~-~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
..-.+-..-.. .+..+...+++++||||||.... ...+...+........++.+++|+|+..+..... ..
T Consensus 162 ~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~--d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~-------~a 232 (429)
T TIGR01425 162 YTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQ--EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA-------QA 232 (429)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcc--hHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH-------HH
Confidence 00011111000 11122235799999999997543 2233344444444456899999999987654422 12
Q ss_pred HHHhhccCCeEEEEecCCCCCh
Q 014354 225 SILYKTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~~~ 246 (426)
..+.+.--+.-+|+||+|....
T Consensus 233 ~~F~~~~~~~g~IlTKlD~~ar 254 (429)
T TIGR01425 233 KAFKDSVDVGSVIITKLDGHAK 254 (429)
T ss_pred HHHHhccCCcEEEEECccCCCC
Confidence 2222333467899999998654
No 282
>PRK14974 cell division protein FtsY; Provisional
Probab=99.21 E-value=8.5e-10 Score=109.55 Aligned_cols=157 Identities=18% Similarity=0.199 Sum_probs=87.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.++.+|+++|+||+||||++.+|.......+.++.+++.|+.-. + ....+......+++.-..+. ....
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~----~------a~eqL~~~a~~lgv~v~~~~-~g~d 206 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA----G------AIEQLEEHAERLGVKVIKHK-YGAD 206 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH----H------HHHHHHHHHHHcCCceeccc-CCCC
Confidence 35689999999999999999999988777777888877663210 0 00111222233332211100 0000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
........+..+ ...+++++||||||.... ...+...+........++.+++|+|+..+.+... ....
T Consensus 207 -p~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~--~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~-------~a~~ 274 (336)
T PRK14974 207 -PAAVAYDAIEHA--KARGIDVVLIDTAGRMHT--DANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE-------QARE 274 (336)
T ss_pred -HHHHHHHHHHHH--HhCCCCEEEEECCCccCC--cHHHHHHHHHHHHhhCCceEEEeeccccchhHHH-------HHHH
Confidence 001111112222 345689999999998652 1222233333334456899999999976543221 1111
Q ss_pred HhhccCCeEEEEecCCCCCh
Q 014354 227 LYKTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~ 246 (426)
....--+.-+|+||+|....
T Consensus 275 f~~~~~~~giIlTKlD~~~~ 294 (336)
T PRK14974 275 FNEAVGIDGVILTKVDADAK 294 (336)
T ss_pred HHhcCCCCEEEEeeecCCCC
Confidence 22222357899999998764
No 283
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.21 E-value=8.5e-11 Score=130.35 Aligned_cols=67 Identities=24% Similarity=0.243 Sum_probs=51.5
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
++.+.|||||||.++. ..+...+ ..+|.+|+|||+..++..++ ..+++.+...++|.|+++||+|+.
T Consensus 97 ~~~inliDtPGh~dF~------~e~~~al--~~~D~ailVvda~~Gv~~~t-----~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFS------SEVTAAL--RITDGALVVVDCIEGVCVQT-----ETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHH------HHHHHHH--hhcCEEEEEEECCCCCcccH-----HHHHHHHHHCCCCEEEEEECCccc
Confidence 4677899999998862 1121112 45799999999999998876 345566777899999999999998
No 284
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.20 E-value=2.3e-10 Score=114.22 Aligned_cols=104 Identities=17% Similarity=0.256 Sum_probs=59.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
..|+|+|.||||||||+|+|++... .+.++|++| + .|+-|++.-. .
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~-------------~v~nypftT----i--------------~p~~G~~~v~---d 48 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-------------EAANYPFCT----I--------------EPNVGVVPVP---D 48 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-------------eeccccccc----c--------------cceEEEEEec---c
Confidence 5799999999999999999999862 266777776 1 1222322210 0
Q ss_pred ccHHHHHHHHHH-HhcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354 150 TKFDEVISLIER-RADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPR 209 (426)
Q Consensus 150 ~~~~~~~~~~~~-~~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~ 209 (426)
...+++..+... ..-..++.|+||||+....... .++......+ ..+|++++|||++.
T Consensus 49 ~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i--~~aD~li~VVd~f~ 108 (364)
T PRK09601 49 PRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANI--REVDAIVHVVRCFE 108 (364)
T ss_pred ccchhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHHHHH--HhCCEEEEEEeCCc
Confidence 011111111000 0011369999999998642111 1222222222 45899999999963
No 285
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.20 E-value=1.8e-10 Score=107.52 Aligned_cols=119 Identities=16% Similarity=0.180 Sum_probs=85.8
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccc---------------------ccccc--
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------------------TLPFA-- 115 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~---------------------~~~~~-- 115 (426)
....+....++.+|+|+|++|||||||||.|.+-..+.++.+.+.+.+.... -+|.-
T Consensus 21 L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv 100 (226)
T COG1136 21 LKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTV 100 (226)
T ss_pred cccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCH
Confidence 5667777889999999999999999999999999999988888877542100 00100
Q ss_pred -cccch----------hhhHHHHHHHHHcCCCCCCC-cccccccccccHHHHHHHHHHHhcCCCEEEEcCC-Ccccc
Q 014354 116 -ANIDI----------RDTIRYKEVMKQFNLGPNGG-ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEI 179 (426)
Q Consensus 116 -t~i~~----------r~~~~~~~~~~~~~l~~ng~-i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e~ 179 (426)
.|+.+ .......++++.+|+..... .. ...+|+|++|++++|+|+..++.++|-|.| |-.+.
T Consensus 101 ~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~--p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~ 175 (226)
T COG1136 101 LENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKK--PSELSGGQQQRVAIARALINNPKIILADEPTGNLDS 175 (226)
T ss_pred HHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCC--chhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCCh
Confidence 01110 11223456677888875433 22 236899999999999999999999999999 66554
No 286
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.19 E-value=4.1e-11 Score=102.35 Aligned_cols=119 Identities=17% Similarity=0.173 Sum_probs=74.8
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl 243 (426)
+...+.+||.||+..+ +.+.+.+-. .+++++|+||+...-.-..-.++....+....-.++|+++..||+|+
T Consensus 63 gnvtiklwD~gGq~rf-------rsmWerycR-~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~ 134 (186)
T KOG0075|consen 63 GNVTIKLWDLGGQPRF-------RSMWERYCR-GVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDL 134 (186)
T ss_pred CceEEEEEecCCCccH-------HHHHHHHhh-cCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccC
Confidence 3467789999999776 344554432 36899999999873221111111111122222468999999999998
Q ss_pred CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (426)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~gv~~l~~~l~~~~~ 313 (426)
...-....+...+. +. .. -..+..+.+||+...+++-+++||.++..
T Consensus 135 ~~AL~~~~li~rmg---------------------L~--sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 135 PGALSKIALIERMG---------------------LS--SITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred cccccHHHHHHHhC---------------------cc--ccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 87543222322221 10 00 11256899999999999999999987654
No 287
>PTZ00416 elongation factor 2; Provisional
Probab=99.19 E-value=1.1e-10 Score=129.15 Aligned_cols=67 Identities=25% Similarity=0.240 Sum_probs=51.3
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
++.+.|+||||+.++. ..+... ...+|++|+|||+..++..++ ..+++.+...++|.|+++||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~------~~~~~a--l~~~D~ailVvda~~g~~~~t-----~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFS------SEVTAA--LRVTDGALVVVDCVEGVCVQT-----ETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHH------HHHHHH--HhcCCeEEEEEECCCCcCccH-----HHHHHHHHHcCCCEEEEEEChhhh
Confidence 4678999999998752 112212 245799999999999988876 345566677789999999999998
No 288
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.19 E-value=1.5e-10 Score=111.03 Aligned_cols=155 Identities=25% Similarity=0.294 Sum_probs=98.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
...++|+++|+.|||||||+++|++.......+ -+.....|+ . .+.+
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~dr--------LFATLDpT~---------------h------~a~L---- 222 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDR--------LFATLDPTL---------------H------SAHL---- 222 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccch--------hheeccchh---------------h------hccC----
Confidence 355799999999999999999999654321110 011111011 0 0111
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-----cCCcEEEEEEeCCCCCCchhhhhhHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-----TFPTVVTYVVDTPRSANPMTFMSNML 221 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-----~~~d~vl~VVDa~~~~~~~~~~~~~l 221 (426)
..+..+++.||-|++.- +...+...|.+ ..+|+++.|+|.++..-. ...-
T Consensus 223 ----------------psg~~vlltDTvGFisd-----LP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae----~q~e 277 (410)
T KOG0410|consen 223 ----------------PSGNFVLLTDTVGFISD-----LPIQLVAAFQATLEEVAEADLLLHVVDISHPNAE----EQRE 277 (410)
T ss_pred ----------------CCCcEEEEeechhhhhh-----CcHHHHHHHHHHHHHHhhcceEEEEeecCCccHH----HHHH
Confidence 23457899999998653 33456666654 348999999999875432 2223
Q ss_pred HHHHHHhhccCC-------eEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEee
Q 014354 222 YACSILYKTRLP-------LVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVS 294 (426)
Q Consensus 222 ~~~~~l~~~~~P-------~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vS 294 (426)
..+..+.+.++| +|=|-||+|..+..-- .+.+. .+++|
T Consensus 278 ~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e--------------------------------~E~n~---~v~is 322 (410)
T KOG0410|consen 278 TVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE--------------------------------EEKNL---DVGIS 322 (410)
T ss_pred HHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--------------------------------cccCC---ccccc
Confidence 445556677765 3447888886654310 01111 78999
Q ss_pred cccCCCHHHHHHHHHHHHHH
Q 014354 295 SVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 295 A~~g~gv~~l~~~l~~~~~~ 314 (426)
|++|.|+.++.+++......
T Consensus 323 altgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 323 ALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred cccCccHHHHHHHHHHHhhh
Confidence 99999999999999877654
No 289
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.19 E-value=1.4e-10 Score=106.99 Aligned_cols=164 Identities=15% Similarity=0.198 Sum_probs=94.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+++|.+|+|||+|..++++..+...+ +|.... .|.. .+ ..
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y-------~ptied-~y~k------~~-----------------~v---- 46 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDY-------DPTIED-SYRK------EL-----------------TV---- 46 (196)
T ss_pred CceEEEEECCCCCCcchheeeeccccccccc-------CCCccc-cceE------EE-----------------EE----
Confidence 3468999999999999999999998876432 222211 0000 00 00
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHH-HHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA-FASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~-~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
......+.|+||+|+.++. .+.+. +....+-+++|-|+...++....-+. ..+++.
T Consensus 47 --------------~~~~~~l~ilDt~g~~~~~-------~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~--~~I~r~ 103 (196)
T KOG0395|consen 47 --------------DGEVCMLEILDTAGQEEFS-------AMRDLYIRNGDGFLLVYSITDRSSFEEAKQLR--EQILRV 103 (196)
T ss_pred --------------CCEEEEEEEEcCCCcccCh-------HHHHHhhccCcEEEEEEECCCHHHHHHHHHHH--HHHHHh
Confidence 0234678899999987752 22222 22222234444444433333222111 111222
Q ss_pred HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
.....+|+|+|.||+|+.....+... .-. .+... ...+++.+||+.+.+++++|.
T Consensus 104 ~~~~~~PivlVGNK~Dl~~~R~V~~e--eg~----------------------~la~~-~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 104 KGRDDVPIILVGNKCDLERERQVSEE--EGK----------------------ALARS-WGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred hCcCCCCEEEEEEcccchhccccCHH--HHH----------------------HHHHh-cCCcEEEeeccCCcCHHHHHH
Confidence 22456899999999999875322111 111 11111 235699999999999999999
Q ss_pred HHHHHHHH
Q 014354 307 AVEESAQE 314 (426)
Q Consensus 307 ~l~~~~~~ 314 (426)
.|......
T Consensus 159 ~L~r~~~~ 166 (196)
T KOG0395|consen 159 ELVREIRL 166 (196)
T ss_pred HHHHHHHh
Confidence 99876554
No 290
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.18 E-value=1.3e-10 Score=107.84 Aligned_cols=103 Identities=18% Similarity=0.319 Sum_probs=65.4
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCC
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN 138 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~n 138 (426)
..........-.+|+++|+|.+||||||..|+..... ...+.+||.--+
T Consensus 52 g~GFeV~KsGdaRValIGfPSVGKStlLs~iT~T~Se-------------aA~yeFTTLtcI------------------ 100 (364)
T KOG1486|consen 52 GEGFEVLKSGDARVALIGFPSVGKSTLLSKITSTHSE-------------AASYEFTTLTCI------------------ 100 (364)
T ss_pred CCCeeeeccCCeEEEEecCCCccHHHHHHHhhcchhh-------------hhceeeeEEEee------------------
Confidence 3344444555678999999999999999999987532 333444441000
Q ss_pred CCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCCCCCc
Q 014354 139 GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSANP 213 (426)
Q Consensus 139 g~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~ 213 (426)
.|++. ..+..++++|.|||++..+.+ ..++++.... .-+|+++.|+|++.+...
T Consensus 101 pGvi~-------------------y~ga~IQllDLPGIieGAsqgkGRGRQviavA--rtaDlilMvLDatk~e~q 155 (364)
T KOG1486|consen 101 PGVIH-------------------YNGANIQLLDLPGIIEGASQGKGRGRQVIAVA--RTADLILMVLDATKSEDQ 155 (364)
T ss_pred cceEE-------------------ecCceEEEecCcccccccccCCCCCceEEEEe--ecccEEEEEecCCcchhH
Confidence 12221 256789999999999864322 2344333222 237999999999876543
No 291
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.18 E-value=1e-10 Score=111.17 Aligned_cols=146 Identities=16% Similarity=0.113 Sum_probs=98.0
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccc------c-----
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAA------N----- 117 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t------~----- 117 (426)
..+.+...+++.+++|+|++||||||||+.|.+...+..+.+.+.+.+. .+..+|+.. +
T Consensus 18 l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V 97 (258)
T COG1120 18 LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELV 97 (258)
T ss_pred EecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehH
Confidence 5667777888999999999999999999999999888888887777541 111222221 1
Q ss_pred ----------cc---hhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC-cccccchh
Q 014354 118 ----------ID---IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG-QIEIFTWS 183 (426)
Q Consensus 118 ----------i~---~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG-i~e~~~~~ 183 (426)
+. -.|...+.+.++.+++.....-. ...+|+|.+|++.+|+++..+++++++|.|= ..++. +.
T Consensus 98 ~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~--~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~-~Q 174 (258)
T COG1120 98 LLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP--VDELSGGERQRVLIARALAQETPILLLDEPTSHLDIA-HQ 174 (258)
T ss_pred hhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc--ccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHH-HH
Confidence 10 11233456678888887764432 3468999999999999999999999999994 33431 11
Q ss_pred chHHHHHHHHH-hcCCcEEEEEEeC
Q 014354 184 ASGAIITEAFA-STFPTVVTYVVDT 207 (426)
Q Consensus 184 ~~~~~l~~~~~-~~~~d~vl~VVDa 207 (426)
..-..+...+. .....+|+.+.|.
T Consensus 175 ~evl~ll~~l~~~~~~tvv~vlHDl 199 (258)
T COG1120 175 IEVLELLRDLNREKGLTVVMVLHDL 199 (258)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCH
Confidence 11122233333 2335566666665
No 292
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.18 E-value=2.7e-10 Score=99.08 Aligned_cols=160 Identities=20% Similarity=0.258 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
++.++||.+-+|||+||..++...++.-. ||.| .+|.
T Consensus 9 frlivigdstvgkssll~~ft~gkfaels-------dptv-------gvdf----------------------------- 45 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELS-------DPTV-------GVDF----------------------------- 45 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccC-------CCcc-------chHH-----------------------------
Confidence 57899999999999999999988766421 2332 1111
Q ss_pred ccHHHHHHHHHH-HhcCCCEEEEcCCCcccccchhchHHHHHH-HHHhcCCcEEEEEEeCC--CCCCchhhhhhHHHHHH
Q 014354 150 TKFDEVISLIER-RADHLDYVLVDTPGQIEIFTWSASGAIITE-AFASTFPTVVTYVVDTP--RSANPMTFMSNMLYACS 225 (426)
Q Consensus 150 ~~~~~~~~~~~~-~~~~~~~~liDTPGi~e~~~~~~~~~~l~~-~~~~~~~d~vl~VVDa~--~~~~~~~~~~~~l~~~~ 225 (426)
...+++- .+....+++|||+|+.++ +.+++ +++.. --+++|.|.+ .++.+...| +....
T Consensus 46 -----farlie~~pg~riklqlwdtagqerf-------rsitksyyrns--vgvllvyditnr~sfehv~~w---~~ea~ 108 (213)
T KOG0091|consen 46 -----FARLIELRPGYRIKLQLWDTAGQERF-------RSITKSYYRNS--VGVLLVYDITNRESFEHVENW---VKEAA 108 (213)
T ss_pred -----HHHHHhcCCCcEEEEEEeeccchHHH-------HHHHHHHhhcc--cceEEEEeccchhhHHHHHHH---HHHHH
Confidence 1111110 123468899999999887 33333 34433 3445555554 444443322 11122
Q ss_pred HHhh-ccCC-eEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 226 ILYK-TRLP-LVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 226 ~l~~-~~~P-~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
...+ ..++ +.||..|+|+.+.+.+. .+.-+.|. .+....+|.+||++|.||++
T Consensus 109 m~~q~P~k~VFlLVGhKsDL~SqRqVt--~EEaEklA-----------------------a~hgM~FVETSak~g~NVeE 163 (213)
T KOG0091|consen 109 MATQGPDKVVFLLVGHKSDLQSQRQVT--AEEAEKLA-----------------------ASHGMAFVETSAKNGCNVEE 163 (213)
T ss_pred HhcCCCCeeEEEEeccccchhhhcccc--HHHHHHHH-----------------------HhcCceEEEecccCCCcHHH
Confidence 2222 2333 45799999999876432 11111111 13456799999999999999
Q ss_pred HHHHHHHHHHH
Q 014354 304 YFKAVEESAQE 314 (426)
Q Consensus 304 l~~~l~~~~~~ 314 (426)
-+.-|...+..
T Consensus 164 AF~mlaqeIf~ 174 (213)
T KOG0091|consen 164 AFDMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHHHH
Confidence 88777655443
No 293
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=3.9e-10 Score=111.14 Aligned_cols=104 Identities=19% Similarity=0.312 Sum_probs=67.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
...++|+|.||+|||||+|+|+..... ..++|++| +.||-|+..-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~-------------~aNYPF~T------------------IePN~Giv~v---- 46 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAE-------------IANYPFCT------------------IEPNVGVVYV---- 46 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCcc-------------ccCCCccc------------------ccCCeeEEec----
Confidence 357999999999999999999998732 67889887 4455554431
Q ss_pred cc-cHHHHHHHHH--HHhcCCCEEEEcCCCcccccc-hhchHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354 149 TT-KFDEVISLIE--RRADHLDYVLVDTPGQIEIFT-WSASGAIITEAFASTFPTVVTYVVDTPR 209 (426)
Q Consensus 149 s~-~~~~~~~~~~--~~~~~~~~~liDTPGi~e~~~-~~~~~~~l~~~~~~~~~d~vl~VVDa~~ 209 (426)
.+ -+.++..+.. .......+.|+|.+|+..... -..+|..+..-++ .+|+++.|||++.
T Consensus 47 ~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IR--evdaI~hVVr~f~ 109 (372)
T COG0012 47 PDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIR--EVDAIIHVVRCFG 109 (372)
T ss_pred CchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCCcchHHHHhhh--hcCeEEEEEEecC
Confidence 11 1111111111 001124678999999988643 2335665555553 4699999999973
No 294
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=7.7e-11 Score=103.52 Aligned_cols=120 Identities=14% Similarity=0.106 Sum_probs=76.9
Q ss_pred CCEEEEcCCCcccccchhchHHHHH-HHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIIT-EAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~-~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
..+.|||.-|+... +.+. .++ ..++.++||||+.+...-..-.+........-...+.|+++.+||-|+.
T Consensus 69 ~~l~fwdlgGQe~l-------rSlw~~yY--~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q 139 (197)
T KOG0076|consen 69 APLSFWDLGGQESL-------RSLWKKYY--WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQ 139 (197)
T ss_pred ceeEEEEcCChHHH-------HHHHHHHH--HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhh
Confidence 57899999999553 2222 222 3468999999997632221111111111122235689999999999998
Q ss_pred ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHH
Q 014354 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF 315 (426)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~ 315 (426)
......++...+.. ... + -....++.||||++|+||.+=..|+...++..
T Consensus 140 ~~~~~~El~~~~~~-~e~------------------~--~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 140 NAMEAAELDGVFGL-AEL------------------I--PRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhHHHHHHHhhh-hhh------------------c--CCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 87655444433331 000 0 01235799999999999999999999988875
No 295
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.15 E-value=2.5e-10 Score=102.94 Aligned_cols=160 Identities=18% Similarity=0.152 Sum_probs=108.8
Q ss_pred hHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------
Q 014354 38 KEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP---------- 107 (426)
Q Consensus 38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~---------- 107 (426)
.+.++++++...+ ..+.+...+++.+++++||+||||||||..+.+......+.++|.+.+-
T Consensus 4 i~nv~K~y~~~~v--------l~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk 75 (252)
T COG4604 4 IENVSKSYGTKVV--------LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAK 75 (252)
T ss_pred ehhhhHhhCCEEe--------eccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHH
Confidence 3567777777766 6777888889999999999999999999999999888888888887762
Q ss_pred ---------------------ccccccccc-ccchhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcC
Q 014354 108 ---------------------AVMTLPFAA-NIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADH 165 (426)
Q Consensus 108 ---------------------~v~~~~~~t-~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~ 165 (426)
++..+||.. .....++..+.+.++.++|..-..- .+..||+|++|++-+|..+..+
T Consensus 76 ~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dr--yLd~LSGGQrQRAfIAMVlaQd 153 (252)
T COG4604 76 KLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDR--YLDELSGGQRQRAFIAMVLAQD 153 (252)
T ss_pred HHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHH--hHHhcccchhhhhhhheeeecc
Confidence 123344432 1112344455677777776654332 2346899999999999999999
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcC-CcEEEEEEeC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTF-PTVVTYVVDT 207 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~-~d~vl~VVDa 207 (426)
.+|+++|.|=----..|...-..+.+.++..+ ..+++++.|.
T Consensus 154 TdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDI 196 (252)
T COG4604 154 TDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDI 196 (252)
T ss_pred CcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecc
Confidence 99999999942111112222223333333333 4566666665
No 296
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.13 E-value=3.3e-10 Score=105.04 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccC
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSR 96 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~ 96 (426)
+|+++|.+|+|||||++++++..+..
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~ 27 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLG 27 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 68999999999999999999876543
No 297
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.13 E-value=1.9e-09 Score=107.76 Aligned_cols=122 Identities=19% Similarity=0.159 Sum_probs=70.1
Q ss_pred CCEEEEcCCCcccccchhchHH---------------------HH-HHHHHhcCCcEEEEEE-eCCCC-CCchhhhhhHH
Q 014354 166 LDYVLVDTPGQIEIFTWSASGA---------------------II-TEAFASTFPTVVTYVV-DTPRS-ANPMTFMSNML 221 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~---------------------~l-~~~~~~~~~d~vl~VV-Da~~~-~~~~~~~~~~l 221 (426)
..+.||||+|+......+.+.. .+ ++..-..++|+.|+|. |.+-+ +....+.....
T Consensus 91 ~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe 170 (492)
T TIGR02836 91 FKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEE 170 (492)
T ss_pred ccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHH
Confidence 6889999999877522111100 00 1111123678989888 77411 11122333334
Q ss_pred HHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354 222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (426)
Q Consensus 222 ~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv 301 (426)
.....+++.++|+|+|+||+|-..++.. .+...+. +.|. ++++++||.. -.-
T Consensus 171 ~~i~eLk~~~kPfiivlN~~dp~~~et~-~l~~~l~-------------------------eky~-vpvl~v~c~~-l~~ 222 (492)
T TIGR02836 171 RVIEELKELNKPFIILLNSTHPYHPETE-ALRQELE-------------------------EKYD-VPVLAMDVES-MRE 222 (492)
T ss_pred HHHHHHHhcCCCEEEEEECcCCCCchhH-HHHHHHH-------------------------HHhC-CceEEEEHHH-cCH
Confidence 5667788999999999999995544321 1222221 2344 7889999864 345
Q ss_pred HHHHHHHHHHHHHH
Q 014354 302 EAYFKAVEESAQEF 315 (426)
Q Consensus 302 ~~l~~~l~~~~~~~ 315 (426)
.++...+.+.+.++
T Consensus 223 ~DI~~il~~vL~EF 236 (492)
T TIGR02836 223 SDILSVLEEVLYEF 236 (492)
T ss_pred HHHHHHHHHHHhcC
Confidence 56666666666553
No 298
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.13 E-value=3.9e-09 Score=102.30 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=87.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..++.+++++|++|+||||++..|.......+.++.++..|+.-. ........+.+..++. ++..
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~----------~a~~ql~~~~~~~~i~----~~~~- 133 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA----------AAIEQLEEWAKRLGVD----VIKQ- 133 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH----------HHHHHHHHHHHhCCeE----EEeC-
Confidence 345679999999999999999999988877788999998885210 1111222233333321 1110
Q ss_pred ccccccHHHHHH-HHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh------cCCcEEEEEEeCCCCCCchhhhh
Q 014354 146 NLFTTKFDEVIS-LIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS------TFPTVVTYVVDTPRSANPMTFMS 218 (426)
Q Consensus 146 ~~ls~~~~~~~~-~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~------~~~d~vl~VVDa~~~~~~~~~~~ 218 (426)
..-.+...-... +......+++++||||||.... .......+...... ..++-+++|+|+..+.+...
T Consensus 134 ~~~~dp~~~~~~~l~~~~~~~~D~ViIDT~G~~~~--d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~--- 208 (272)
T TIGR00064 134 KEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQN--KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALE--- 208 (272)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEeCCCCCcc--hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHH---
Confidence 000010011101 1122356799999999998653 11112222222222 23789999999974432211
Q ss_pred hHHHHHHHHhhccCCeEEEEecCCCCCh
Q 014354 219 NMLYACSILYKTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 219 ~~l~~~~~l~~~~~P~IlVlNKiDl~~~ 246 (426)
.+..+.... -+.-+|+||+|....
T Consensus 209 ---~~~~f~~~~-~~~g~IlTKlDe~~~ 232 (272)
T TIGR00064 209 ---QAKVFNEAV-GLTGIILTKLDGTAK 232 (272)
T ss_pred ---HHHHHHhhC-CCCEEEEEccCCCCC
Confidence 111111122 357899999998764
No 299
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=5.9e-10 Score=111.39 Aligned_cols=159 Identities=20% Similarity=0.190 Sum_probs=108.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+..|+--.|||||+.++++...... |.. ++.|+...-|+.+ .
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l---------------~Ee---------------kKRG~TiDlg~~y------~ 45 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRL---------------PEE---------------KKRGITIDLGFYY------R 45 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccc---------------hhh---------------hhcCceEeeeeEe------c
Confidence 588999999999999999999764321 100 0111111112111 1
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~ 229 (426)
...+..+.|||.||+.++ +..++.. ...|++++||++..++..++ ...+..+..
T Consensus 46 -----------~~~d~~~~fIDvpgh~~~---------i~~miag~~~~d~alLvV~~deGl~~qt-----gEhL~iLdl 100 (447)
T COG3276 46 -----------KLEDGVMGFIDVPGHPDF---------ISNLLAGLGGIDYALLVVAADEGLMAQT-----GEHLLILDL 100 (447)
T ss_pred -----------cCCCCceEEeeCCCcHHH---------HHHHHhhhcCCceEEEEEeCccCcchhh-----HHHHHHHHh
Confidence 124457889999999764 3333332 34799999999999998877 344455666
Q ss_pred ccCCe-EEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354 230 TRLPL-VLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (426)
Q Consensus 230 ~~~P~-IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l 308 (426)
.+++. ++|+||+|++..+.+....+.+.. . + . +...++|.+|+.+|.||++|.+.|
T Consensus 101 lgi~~giivltk~D~~d~~r~e~~i~~Il~---~--------------l-----~-l~~~~i~~~s~~~g~GI~~Lk~~l 157 (447)
T COG3276 101 LGIKNGIIVLTKADRVDEARIEQKIKQILA---D--------------L-----S-LANAKIFKTSAKTGRGIEELKNEL 157 (447)
T ss_pred cCCCceEEEEeccccccHHHHHHHHHHHHh---h--------------c-----c-cccccccccccccCCCHHHHHHHH
Confidence 77777 899999999998754444433321 1 1 1 456789999999999999999999
Q ss_pred HHHHH
Q 014354 309 EESAQ 313 (426)
Q Consensus 309 ~~~~~ 313 (426)
.....
T Consensus 158 ~~L~~ 162 (447)
T COG3276 158 IDLLE 162 (447)
T ss_pred HHhhh
Confidence 88773
No 300
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.13 E-value=4.3e-10 Score=99.12 Aligned_cols=144 Identities=22% Similarity=0.294 Sum_probs=80.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCC----CCCCCcccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNL----GPNGGILTSLN 146 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l----~~ng~i~~~~~ 146 (426)
+++++|++|+|||||+..+.......+.++.++..|+..... ... + ..+.+...+.....++ .+.++.+.
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 74 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFS-GGA-I-LGDRIRMERHASDPGVFIRSLATRGFLG--- 74 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCc-ccc-h-hcCceEhhheecCCCceEEEcCCcCccc---
Confidence 378999999999999999999988889999999998743211 000 0 0111111111000010 11111111
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
.+.....+.+..++ ..+++++||||||+... ....+ ..+|.+++|+.....-. +.+..
T Consensus 75 ~~~~~~~~~~~~~~--~~~~D~iiIDtaG~~~~---------~~~~~--~~Ad~~ivv~tpe~~D~---------y~~~k 132 (148)
T cd03114 75 GLSRATPEVIRVLD--AAGFDVIIVETVGVGQS---------EVDIA--SMADTTVVVMAPGAGDD---------IQAIK 132 (148)
T ss_pred ccchhHHHHHHHHH--hcCCCEEEEECCccChh---------hhhHH--HhCCEEEEEECCCchhH---------HHHhh
Confidence 12233444444444 34799999999997542 11122 34688888887652211 11222
Q ss_pred HhhccCCeEEEEecCC
Q 014354 227 LYKTRLPLVLAFNKTD 242 (426)
Q Consensus 227 l~~~~~P~IlVlNKiD 242 (426)
..-.....++|+||+|
T Consensus 133 ~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 133 AGIMEIADIVVVNKAD 148 (148)
T ss_pred hhHhhhcCEEEEeCCC
Confidence 2233556799999998
No 301
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.12 E-value=8.9e-11 Score=98.66 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=39.1
Q ss_pred CEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecCC
Q 014354 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTD 242 (426)
Q Consensus 167 ~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKiD 242 (426)
.+.|||++|...+.. .... . ...+|++++|+|.++..+- ......+..+..+. ..++|+|||.||.|
T Consensus 51 ~~~~~d~~g~~~~~~--~~~~-~-----~~~~d~~ilv~D~s~~~s~-~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 51 SLQFWDFGGQEEFYS--QHQF-F-----LKKADAVILVYDLSDPESL-EYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEEESSSHCHHC--TSHH-H-----HHHSCEEEEEEECCGHHHH-HHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEEEEecCccceecc--cccc-h-----hhcCcEEEEEEcCCChHHH-HHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 478999999976521 1111 1 1336999999998753211 22222222333333 24699999999998
No 302
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1e-09 Score=109.21 Aligned_cols=138 Identities=17% Similarity=0.202 Sum_probs=85.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
....+||-+|.||||||..+|+-.-..+...+.|-+-. ..+....+||+.-. ..||..+
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk--------------~~~~a~SDWM~iEk---qRGISVt---- 70 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRK--------------SGKHAKSDWMEIEK---QRGISVT---- 70 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeecc--------------CCcccccHHHHHHH---hcCceEE----
Confidence 35679999999999999999986544433222221111 11112234443211 1233332
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~ 228 (426)
+.-|+. -..++.+.|+|||||.+++ ...-+.+ +.+|.+|.|||+..|+.+++.. ....++
T Consensus 71 sSVMqF-------~Y~~~~iNLLDTPGHeDFS------EDTYRtL--tAvDsAvMVIDaAKGiE~qT~K-----LfeVcr 130 (528)
T COG4108 71 SSVMQF-------DYADCLVNLLDTPGHEDFS------EDTYRTL--TAVDSAVMVIDAAKGIEPQTLK-----LFEVCR 130 (528)
T ss_pred eeEEEe-------ccCCeEEeccCCCCccccc------hhHHHHH--HhhheeeEEEecccCccHHHHH-----HHHHHh
Confidence 111111 1356788999999999973 1112222 2359999999999999998843 334456
Q ss_pred hccCCeEEEEecCCCCChH
Q 014354 229 KTRLPLVLAFNKTDVAQHE 247 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~ 247 (426)
..++|++-.+||+|+....
T Consensus 131 lR~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 131 LRDIPIFTFINKLDREGRD 149 (528)
T ss_pred hcCCceEEEeeccccccCC
Confidence 6799999999999998754
No 303
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.11 E-value=6e-10 Score=106.53 Aligned_cols=126 Identities=15% Similarity=0.192 Sum_probs=70.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
...+|+|+|.+|||||||+|+|++..... ++..+.++ +... .+ .++
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~------------v~~~~~~T----~~~~--------------~~-~~~--- 75 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAA------------TSAFQSET----LRVR--------------EV-SGT--- 75 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcc------------cCCCCCce----EEEE--------------EE-EEE---
Confidence 56789999999999999999999986432 22221111 0000 00 000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHH----HHHHHHhcCCcEEEEEEeCCCC-CCchhhhhhHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI----ITEAFASTFPTVVTYVVDTPRS-ANPMTFMSNMLY 222 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~----l~~~~~~~~~d~vl~VVDa~~~-~~~~~~~~~~l~ 222 (426)
..+..+.||||||+.+.......... +.+.+.....++++||...... ....+ ..
T Consensus 76 ---------------~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-----~~ 135 (249)
T cd01853 76 ---------------VDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-----LP 135 (249)
T ss_pred ---------------ECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-----HH
Confidence 24568999999999875211111111 2223333457888888654322 22221 11
Q ss_pred HHHHHh-----hccCCeEEEEecCCCCChH
Q 014354 223 ACSILY-----KTRLPLVLAFNKTDVAQHE 247 (426)
Q Consensus 223 ~~~~l~-----~~~~P~IlVlNKiDl~~~~ 247 (426)
.+..+. ..-.++++|+||+|...+.
T Consensus 136 llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 136 LLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 111121 2235799999999998764
No 304
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.10 E-value=3.8e-11 Score=100.85 Aligned_cols=120 Identities=19% Similarity=0.236 Sum_probs=74.9
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCC--Cc-hhhhhhHHHHHHHHhhccCCeEEEEec
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NP-MTFMSNMLYACSILYKTRLPLVLAFNK 240 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~--~~-~~~~~~~l~~~~~l~~~~~P~IlVlNK 240 (426)
..+.+++|||+|+.++. +....++ ..+|.++++.|..+.. ++ +.|++.+ ....+..+.+.++.||
T Consensus 45 ~kvklqiwdtagqerfr------svt~ayy--rda~allllydiankasfdn~~~wlsei----~ey~k~~v~l~llgnk 112 (192)
T KOG0083|consen 45 KKVKLQIWDTAGQERFR------SVTHAYY--RDADALLLLYDIANKASFDNCQAWLSEI----HEYAKEAVALMLLGNK 112 (192)
T ss_pred cEEEEEEeeccchHHHh------hhhHhhh--cccceeeeeeecccchhHHHHHHHHHHH----HHHHHhhHhHhhhccc
Confidence 45789999999998872 1122233 2356677777765443 33 3333332 2233556778999999
Q ss_pred CCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHHHhhhh
Q 014354 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYK 320 (426)
Q Consensus 241 iDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~~~~~ 320 (426)
+|+.....+..- + +.-+.+-| ..|+..+||++|-+|+--|-.|.+.+....-.+|
T Consensus 113 ~d~a~er~v~~d--d----------------------g~kla~~y-~ipfmetsaktg~nvd~af~~ia~~l~k~~~~~~ 167 (192)
T KOG0083|consen 113 CDLAHERAVKRD--D----------------------GEKLAEAY-GIPFMETSAKTGFNVDLAFLAIAEELKKLKMGAP 167 (192)
T ss_pred cccchhhccccc--h----------------------HHHHHHHH-CCCceeccccccccHhHHHHHHHHHHHHhccCCC
Confidence 999765422100 0 11122234 3789999999999999999888887766544333
No 305
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.09 E-value=1.6e-09 Score=90.43 Aligned_cols=143 Identities=19% Similarity=0.150 Sum_probs=89.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+++++|..|+|||||+++|.|...... ..+ ++-.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk--------------KTQ-------------------------Ave~------ 36 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK--------------KTQ-------------------------AVEF------ 36 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc--------------ccc-------------------------eeec------
Confidence 3689999999999999999999863211 000 0000
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~ 229 (426)
.+--.|||||-. +.+...-..+.- ....+|++++|..+.+..+... . .++.-
T Consensus 37 ----------------~d~~~IDTPGEy--~~~~~~Y~aL~t--t~~dadvi~~v~~and~~s~f~--p------~f~~~ 88 (148)
T COG4917 37 ----------------NDKGDIDTPGEY--FEHPRWYHALIT--TLQDADVIIYVHAANDPESRFP--P------GFLDI 88 (148)
T ss_pred ----------------cCccccCCchhh--hhhhHHHHHHHH--HhhccceeeeeecccCccccCC--c------ccccc
Confidence 122369999952 222222222221 2356799999998876654311 1 11222
Q ss_pred ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354 230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE 309 (426)
Q Consensus 230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~ 309 (426)
...|+|-|++|+|+...+.+......+. + .+.-++|.+|+..+.|+++|+++|.
T Consensus 89 ~~k~vIgvVTK~DLaed~dI~~~~~~L~-------------------------e-aGa~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 89 GVKKVIGVVTKADLAEDADISLVKRWLR-------------------------E-AGAEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred cccceEEEEecccccchHhHHHHHHHHH-------------------------H-cCCcceEEEeccCcccHHHHHHHHH
Confidence 3567899999999997654332221111 1 1245799999999999999999886
Q ss_pred HH
Q 014354 310 ES 311 (426)
Q Consensus 310 ~~ 311 (426)
..
T Consensus 143 ~~ 144 (148)
T COG4917 143 SL 144 (148)
T ss_pred hh
Confidence 53
No 306
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=5.7e-10 Score=101.43 Aligned_cols=183 Identities=20% Similarity=0.306 Sum_probs=105.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
...|.++|+.+||||+|+-.|....... ++.. +.||-+....
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~-----------TvtS-----------------------iepn~a~~r~---- 79 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRG-----------TVTS-----------------------IEPNEATYRL---- 79 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccC-----------eeee-----------------------eccceeeEee----
Confidence 3569999999999999999888764221 1111 2233333321
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHHHH-HHH
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYA-CSI 226 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l~~-~~~ 226 (426)
+.-...+||-||+.+. ...+.+.+.. ..+-.+|||||+........-....++- +..
T Consensus 80 ---------------gs~~~~LVD~PGH~rl------R~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~ 138 (238)
T KOG0090|consen 80 ---------------GSENVTLVDLPGHSRL------RRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLD 138 (238)
T ss_pred ---------------cCcceEEEeCCCcHHH------HHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHh
Confidence 2234789999999664 2455555543 3467899999998766553322222221 111
Q ss_pred H--hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccch-----hhhHHHH--hhhhHhhh-----h-cCCceE
Q 014354 227 L--YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSY-----TSTLTNS--LSLALDEF-----Y-KNLKSV 291 (426)
Q Consensus 227 l--~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~--~~~~l~~~-----~-~~~~vv 291 (426)
. .....|++|+.||.|+...+....+.+.++.-.+.++..++. ..+..+. ++.--..| . ..+.+.
T Consensus 139 ~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~ 218 (238)
T KOG0090|consen 139 SRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFA 218 (238)
T ss_pred hccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEe
Confidence 1 245678899999999987655544555544333322211110 0000000 00000011 1 235788
Q ss_pred EeecccCCCHHHHHHHHHHH
Q 014354 292 GVSSVSGAGIEAYFKAVEES 311 (426)
Q Consensus 292 ~vSA~~g~gv~~l~~~l~~~ 311 (426)
+.|+++| ++.++.+||.+.
T Consensus 219 e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 219 EASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ecccCcC-ChHHHHHHHHHh
Confidence 8999988 899999988764
No 307
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=4.8e-10 Score=97.02 Aligned_cols=166 Identities=23% Similarity=0.304 Sum_probs=92.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHc-CCCCCCCccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQF-NLGPNGGILTSLNLFT 149 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~-~l~~ng~i~~~~~~ls 149 (426)
+.+.+|.+|+||||||-+.+...+.. ..+..++.| .|.... .+ ..+|+++ -
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~-qFIsTVGID-------------FreKrv------vY~s~gp~g~-g------- 62 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNT-QFISTVGID-------------FREKRV------VYNSSGPGGG-G------- 62 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccc-eeEEEeecc-------------cccceE------EEeccCCCCC-C-------
Confidence 45678999999999999888776543 233333333 221110 00 0112211 0
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHH-HHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH-
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA-FASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL- 227 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~-~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l- 227 (426)
+.....+++|||+|++++ +.+..+ ++.+ --.+++.|.+. .+.|+.. ..+++.+
T Consensus 63 ------------r~~rihLQlWDTAGQERF-------RSLTTAFfRDA--MGFlLiFDlT~---eqSFLnv-rnWlSQL~ 117 (219)
T KOG0081|consen 63 ------------RGQRIHLQLWDTAGQERF-------RSLTTAFFRDA--MGFLLIFDLTS---EQSFLNV-RNWLSQLQ 117 (219)
T ss_pred ------------cceEEEEeeeccccHHHH-------HHHHHHHHHhh--ccceEEEeccc---hHHHHHH-HHHHHHHH
Confidence 123467899999999887 233322 2222 23455566543 2233221 2222222
Q ss_pred --hhccCC-eEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 228 --YKTRLP-LVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 228 --~~~~~P-~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
.-.+-| +||+.||+|+.....+.+-. +..+...| ..|+|.+||-+|++|..-
T Consensus 118 ~hAYcE~PDivlcGNK~DL~~~R~Vs~~q------------------------a~~La~ky-glPYfETSA~tg~Nv~ka 172 (219)
T KOG0081|consen 118 THAYCENPDIVLCGNKADLEDQRVVSEDQ------------------------AAALADKY-GLPYFETSACTGTNVEKA 172 (219)
T ss_pred HhhccCCCCEEEEcCccchhhhhhhhHHH------------------------HHHHHHHh-CCCeeeeccccCcCHHHH
Confidence 234556 45689999998766432111 11122334 389999999999999988
Q ss_pred HHHHHHHHHH
Q 014354 305 FKAVEESAQE 314 (426)
Q Consensus 305 ~~~l~~~~~~ 314 (426)
.+.|...+-+
T Consensus 173 ve~LldlvM~ 182 (219)
T KOG0081|consen 173 VELLLDLVMK 182 (219)
T ss_pred HHHHHHHHHH
Confidence 7777665444
No 308
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=6.5e-10 Score=114.03 Aligned_cols=179 Identities=20% Similarity=0.290 Sum_probs=100.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCC-------
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN------- 138 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~n------- 138 (426)
.+.....+++|+.++|||||+.+|+...-... -|....++.-.+..|-..+
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~----------------------~~~m~kl~~es~~~Gk~Sf~yawiLD 231 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEIS----------------------SRSMHKLERESKNLGKSSFAYAWILD 231 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCcc----------------------HHHHHHHHHHHHhcCCcceeeeEEec
Confidence 33557899999999999999999998763321 1222223222222222111
Q ss_pred -------CCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCC
Q 014354 139 -------GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRS 210 (426)
Q Consensus 139 -------g~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~ 210 (426)
.|+.-..- ...+ -.....+.|+|+|||-+|- ..++. ...+|++++|||++.+
T Consensus 232 eT~eERerGvTm~v~--~~~f---------es~~~~~tliDaPGhkdFi---------~nmi~g~sqaD~avLvvd~s~~ 291 (603)
T KOG0458|consen 232 ETKEERERGVTMDVK--TTWF---------ESKSKIVTLIDAPGHKDFI---------PNMISGASQADVAVLVVDASTG 291 (603)
T ss_pred cchhhhhcceeEEee--eEEE---------ecCceeEEEecCCCccccc---------hhhhccccccceEEEEEECCcc
Confidence 12111000 0000 0234678999999987752 22222 2458999999999865
Q ss_pred CCchhhhh--hHHHHHHHHhhccCC-eEEEEecCCCCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhh
Q 014354 211 ANPMTFMS--NMLYACSILYKTRLP-LVLAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY 285 (426)
Q Consensus 211 ~~~~~~~~--~~l~~~~~l~~~~~P-~IlVlNKiDl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 285 (426)
.-...|.. ....++.+++..++- .|+++||+|++.- ++..++...+..|+.. .. .|.
T Consensus 292 ~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~-------------~~-----gf~ 353 (603)
T KOG0458|consen 292 EFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKE-------------SC-----GFK 353 (603)
T ss_pred hhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHHHHHHHHHHHHHHHH-------------hc-----Ccc
Confidence 43221110 113344445555554 5778999999973 3334444444433311 00 122
Q ss_pred -cCCceEEeecccCCCHHHH
Q 014354 286 -KNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 286 -~~~~vv~vSA~~g~gv~~l 304 (426)
..+.+||+|+++|+|+-..
T Consensus 354 es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 354 ESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cCCcceEecccccCCccccc
Confidence 2358999999999997643
No 309
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=7e-10 Score=94.11 Aligned_cols=164 Identities=19% Similarity=0.260 Sum_probs=94.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
..++.+|+|.-|+|||.||..++...+.. ..|...-+.+++. |.
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfma--------dcphtigvefgtr-----------------------ii----- 53 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMA--------DCPHTIGVEFGTR-----------------------II----- 53 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhh--------cCCcccceeccee-----------------------EE-----
Confidence 45788999999999999999999887532 1121111122220 00
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHH-HHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA-FASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~-~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
+..+....++||||+|+.++ +.+.+. ++.+ .-++.|.|.++.... ..++..+.-.+.
T Consensus 54 ------------evsgqkiklqiwdtagqerf-------ravtrsyyrga--agalmvyditrrsty-nhlsswl~dar~ 111 (215)
T KOG0097|consen 54 ------------EVSGQKIKLQIWDTAGQERF-------RAVTRSYYRGA--AGALMVYDITRRSTY-NHLSSWLTDARN 111 (215)
T ss_pred ------------EecCcEEEEEEeecccHHHH-------HHHHHHHhccc--cceeEEEEehhhhhh-hhHHHHHhhhhc
Confidence 00135578999999999886 233333 3322 344555565543322 112222333333
Q ss_pred HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
+...+..++++.||.|+...+.+. .+..+.|.. -+...++..||++|.+|++.|-
T Consensus 112 ltnpnt~i~lignkadle~qrdv~--yeeak~fae-----------------------engl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 112 LTNPNTVIFLIGNKADLESQRDVT--YEEAKEFAE-----------------------ENGLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred cCCCceEEEEecchhhhhhcccCc--HHHHHHHHh-----------------------hcCeEEEEecccccCcHHHHHH
Confidence 445566678899999998765431 111121111 1335688999999999998765
Q ss_pred HHHHHHHH
Q 014354 307 AVEESAQE 314 (426)
Q Consensus 307 ~l~~~~~~ 314 (426)
...+.+..
T Consensus 167 e~akkiyq 174 (215)
T KOG0097|consen 167 ETAKKIYQ 174 (215)
T ss_pred HHHHHHHH
Confidence 54444433
No 310
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.07 E-value=9.7e-10 Score=102.11 Aligned_cols=130 Identities=17% Similarity=0.191 Sum_probs=95.8
Q ss_pred hhHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-c------
Q 014354 37 EKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-V------ 109 (426)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-v------ 109 (426)
+...+..+++...+ ..+.+....++.+++|+|++|+||||||+.|+|...+..+.+.+.+.+.. .
T Consensus 10 ~vr~v~~~fG~~~I--------ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~ 81 (263)
T COG1127 10 EVRGVTKSFGDRVI--------LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELY 81 (263)
T ss_pred EEeeeeeecCCEEE--------ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHH
Confidence 34566666666666 77788889999999999999999999999999999999999999888721 1
Q ss_pred ----------------cccccccccc--hhhhH---------HHHHHHHHcCCCCC-CCcccccccccccHHHHHHHHHH
Q 014354 110 ----------------MTLPFAANID--IRDTI---------RYKEVMKQFNLGPN-GGILTSLNLFTTKFDEVISLIER 161 (426)
Q Consensus 110 ----------------~~~~~~t~i~--~r~~~---------~~~~~~~~~~l~~n-g~i~~~~~~ls~~~~~~~~~~~~ 161 (426)
+.+....|+. +|... .+...++.+||.+. +..+.+ .+|+||++++++|+|
T Consensus 82 ~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps--ELSGGM~KRvaLARA 159 (263)
T COG1127 82 EIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPS--ELSGGMRKRVALARA 159 (263)
T ss_pred HHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCch--hhcchHHHHHHHHHH
Confidence 1111111111 11111 12335778888877 334443 689999999999999
Q ss_pred HhcCCCEEEEcCC--Cc
Q 014354 162 RADHLDYVLVDTP--GQ 176 (426)
Q Consensus 162 ~~~~~~~~liDTP--Gi 176 (426)
+.-+++++|+|.| |+
T Consensus 160 ialdPell~~DEPtsGL 176 (263)
T COG1127 160 IALDPELLFLDEPTSGL 176 (263)
T ss_pred HhcCCCEEEecCCCCCC
Confidence 9999999999999 55
No 311
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.07 E-value=6.3e-10 Score=121.67 Aligned_cols=71 Identities=24% Similarity=0.199 Sum_probs=51.3
Q ss_pred hcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCC
Q 014354 163 ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (426)
Q Consensus 163 ~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiD 242 (426)
+.++++.||||||+.++. ..+...+ ..+|++|+|+|+..+...++ ..++..+...++|.|+|+||+|
T Consensus 83 ~~~~~i~liDTPG~~~f~------~~~~~al--~~aD~~llVvda~~g~~~~t-----~~~~~~~~~~~~p~ivviNKiD 149 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFG------GDVTRAM--RAVDGAIVVVCAVEGVMPQT-----ETVLRQALKENVKPVLFINKVD 149 (720)
T ss_pred CCceEEEEEeCCCccccH------HHHHHHH--HhcCEEEEEEecCCCCCccH-----HHHHHHHHHcCCCEEEEEEChh
Confidence 356889999999998752 2222222 34799999999998876654 2334445566889999999999
Q ss_pred CCCh
Q 014354 243 VAQH 246 (426)
Q Consensus 243 l~~~ 246 (426)
+...
T Consensus 150 ~~~~ 153 (720)
T TIGR00490 150 RLIN 153 (720)
T ss_pred cccc
Confidence 9753
No 312
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.07 E-value=2.5e-10 Score=104.02 Aligned_cols=174 Identities=17% Similarity=0.202 Sum_probs=104.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..+++|+|..++|||.||-..+...++..+.+.|.++-. + ...++
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys-~-----~v~V~----------------------------- 48 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYS-A-----NVTVD----------------------------- 48 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccce-E-----EEEec-----------------------------
Confidence 468999999999999999999998888776655542111 1 00000
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeC--CCCCCc--hhhhhhHHHHH
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT--PRSANP--MTFMSNMLYAC 224 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa--~~~~~~--~~~~~~~l~~~ 224 (426)
-++...+-+|||+|+.++...+. +.-..+|+++++.+. ...+.. ..|...+...
T Consensus 49 -------------dg~~v~L~LwDTAGqedYDrlRp--------lsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~- 106 (198)
T KOG0393|consen 49 -------------DGKPVELGLWDTAGQEDYDRLRP--------LSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHH- 106 (198)
T ss_pred -------------CCCEEEEeeeecCCCcccccccc--------cCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhh-
Confidence 01235678999999999843222 211335666554443 333322 2232222211
Q ss_pred HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
-.+.|+|||.+|.|+..... .. ..+... ....++...+..+....+...++++||++..|+.++
T Consensus 107 ----cp~vpiiLVGtk~DLr~d~~---~~---~~l~~~------~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~v 170 (198)
T KOG0393|consen 107 ----CPNVPIILVGTKADLRDDPS---TL---EKLQRQ------GLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEV 170 (198)
T ss_pred ----CCCCCEEEEeehHHhhhCHH---HH---HHHHhc------cCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHH
Confidence 24799999999999984331 11 111111 112233333444444445577999999999999999
Q ss_pred HHHHHHHHHHH
Q 014354 305 FKAVEESAQEF 315 (426)
Q Consensus 305 ~~~l~~~~~~~ 315 (426)
|+.........
T Consensus 171 F~~a~~~~l~~ 181 (198)
T KOG0393|consen 171 FDEAIRAALRP 181 (198)
T ss_pred HHHHHHHHhcc
Confidence 98887776554
No 313
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.06 E-value=6.8e-10 Score=108.80 Aligned_cols=114 Identities=16% Similarity=0.221 Sum_probs=89.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccccc----------c
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----------D 119 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i----------~ 119 (426)
..+.+...+++.+++|+|++||||||||+.|+|...+.++.+.+.+.++. +..+|....+ .
T Consensus 21 l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~ 100 (293)
T COG1131 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLE 100 (293)
T ss_pred EeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHH
Confidence 67778888899999999999999999999999999999999988886542 2223332221 1
Q ss_pred ----hh------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 120 ----IR------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 120 ----~r------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
++ ...+++++++.+++..... ...+.||+|+++++.++.++..+++++|+|.|
T Consensus 101 ~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~--~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEP 163 (293)
T COG1131 101 FFARLYGLSKEEAEERIEELLELFGLEDKAN--KKVRTLSGGMKQRLSIALALLHDPELLILDEP 163 (293)
T ss_pred HHHHHhCCChhHHHHHHHHHHHHcCCchhhC--cchhhcCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 11 1235678999999987332 22345899999999999999999999999999
No 314
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.06 E-value=6.2e-10 Score=108.90 Aligned_cols=217 Identities=15% Similarity=0.139 Sum_probs=124.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHH------HHHHcCCCCCCC
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKE------VMKQFNLGPNGG 140 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~------~~~~~~l~~ng~ 140 (426)
+....|+..|+.++|||||+..|+......+.-..-.- . + +..+.++. .+..+|+.. +.
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~----l---------d-v~kHEverGlsa~iS~~v~Gf~d-gk 179 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSY----L---------D-VQKHEVERGLSADISLRVYGFDD-GK 179 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhh----h---------h-hhhHHHhhccccceeEEEEEecC-Cc
Confidence 44568999999999999999998876544331110000 0 0 11111100 012233333 33
Q ss_pred cccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhH
Q 014354 141 ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNM 220 (426)
Q Consensus 141 i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~ 220 (426)
++.-.+.+.. .+...+.+ ..+.=+.|+||-|++... +...+-+-....|..++||-|..+....+
T Consensus 180 ~~rlknPld~--aE~~~vv~--~aDklVsfVDtvGHEpwL------rTtirGL~gqk~dYglLvVaAddG~~~~t----- 244 (527)
T COG5258 180 VVRLKNPLDE--AEKAAVVK--RADKLVSFVDTVGHEPWL------RTTIRGLLGQKVDYGLLVVAADDGVTKMT----- 244 (527)
T ss_pred eEeecCcccH--HHHhHhhh--hcccEEEEEecCCccHHH------HHHHHHHhccccceEEEEEEccCCcchhh-----
Confidence 4332221221 22222222 233456799999996531 12222233356899999999999988766
Q ss_pred HHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHH-Hh-hhhHhhhhcCCceEEeecccC
Q 014354 221 LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN-SL-SLALDEFYKNLKSVGVSSVSG 298 (426)
Q Consensus 221 l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~-~~~l~~~~~~~~vv~vSA~~g 298 (426)
...+.++...++|+|+|++|+|++..+......+.+..++.....-+-....... .+ +........-+|+|.+|+.+|
T Consensus 245 kEHLgi~~a~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg 324 (527)
T COG5258 245 KEHLGIALAMELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTG 324 (527)
T ss_pred hHhhhhhhhhcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccC
Confidence 4456777888999999999999999988888888888776653321111100000 00 111111112479999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 014354 299 AGIEAYFKAVEESAQE 314 (426)
Q Consensus 299 ~gv~~l~~~l~~~~~~ 314 (426)
+|++-|.+.+ ..+|.
T Consensus 325 ~GldlL~e~f-~~Lp~ 339 (527)
T COG5258 325 EGLDLLDEFF-LLLPK 339 (527)
T ss_pred ccHHHHHHHH-HhCCc
Confidence 9987664443 33443
No 315
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.06 E-value=1.5e-10 Score=104.58 Aligned_cols=129 Identities=18% Similarity=0.209 Sum_probs=103.2
Q ss_pred hHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC-----------
Q 014354 38 KEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD----------- 106 (426)
Q Consensus 38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d----------- 106 (426)
.+.|.+++++..+ .+.++....++.+|+++||+||||||.+..++|-..+..+++.+.+.|
T Consensus 7 a~~l~K~y~kr~V--------v~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RAr 78 (243)
T COG1137 7 AENLAKSYKKRKV--------VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRAR 78 (243)
T ss_pred ehhhhHhhCCeee--------eeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhh
Confidence 4678889998888 788888899999999999999999999999999999999999998887
Q ss_pred ccccccccccccc----hhh------------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhc
Q 014354 107 PAVMTLPFAANID----IRD------------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRAD 164 (426)
Q Consensus 107 ~~v~~~~~~t~i~----~r~------------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~ 164 (426)
.++...|+.+.+. +.+ ..+++.+++.|++..-..-.. -.+|+|.+.++++|+++..
T Consensus 79 lGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a--~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKA--YSLSGGERRRVEIARALAA 156 (243)
T ss_pred cCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcc--cccccchHHHHHHHHHHhc
Confidence 2466777776542 111 123457788888765322211 2489999999999999999
Q ss_pred CCCEEEEcCC--Cc
Q 014354 165 HLDYVLVDTP--GQ 176 (426)
Q Consensus 165 ~~~~~liDTP--Gi 176 (426)
++.++++|.| |+
T Consensus 157 ~P~fiLLDEPFAGV 170 (243)
T COG1137 157 NPKFILLDEPFAGV 170 (243)
T ss_pred CCCEEEecCCccCC
Confidence 9999999999 65
No 316
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.05 E-value=3.9e-09 Score=94.78 Aligned_cols=120 Identities=18% Similarity=0.231 Sum_probs=90.0
Q ss_pred CCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccc---ccccccc------------------
Q 014354 58 AGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---MTLPFAA------------------ 116 (426)
Q Consensus 58 ~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v---~~~~~~t------------------ 116 (426)
+..+.+....++.++-|+|++||||||||+.|.+...+..+.+.+.+.|-.- ..+|+-.
T Consensus 17 aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tv 96 (223)
T COG2884 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTV 96 (223)
T ss_pred hhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchH
Confidence 4667777788999999999999999999999999999999888887776211 0111110
Q ss_pred --ccc-------h-h--hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC-Ccccc
Q 014354 117 --NID-------I-R--DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEI 179 (426)
Q Consensus 117 --~i~-------~-r--~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e~ 179 (426)
|+. . + -..++.++++.+||......+.. .||+|.+|++.+|+|....+.+++-|.| |-.++
T Consensus 97 yeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~--~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp 170 (223)
T COG2884 97 YENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS--QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDP 170 (223)
T ss_pred hhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc--ccCchHHHHHHHHHHHccCCCeEeecCCCCCCCh
Confidence 110 0 0 11245677888888876555443 6899999999999999999999999999 76665
No 317
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.05 E-value=2.3e-09 Score=104.47 Aligned_cols=147 Identities=17% Similarity=0.228 Sum_probs=82.0
Q ss_pred hhhhHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccccccc
Q 014354 35 DKEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPF 114 (426)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~ 114 (426)
..-+..|.+.++++... ..+..+|+|+|.+|+|||||+|+|++..... ++..+.
T Consensus 18 ~~tq~~l~~~l~~l~~~--------------~~~~~rIllvGktGVGKSSliNsIlG~~v~~------------vs~f~s 71 (313)
T TIGR00991 18 PATQTKLLELLGKLKEE--------------DVSSLTILVMGKGGVGKSSTVNSIIGERIAT------------VSAFQS 71 (313)
T ss_pred HHHHHHHHHHHHhcccc--------------cccceEEEEECCCCCCHHHHHHHHhCCCccc------------ccCCCC
Confidence 34467777888887762 2356789999999999999999999987432 111111
Q ss_pred ccccchhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchH-HHHHHHH
Q 014354 115 AANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG-AIITEAF 193 (426)
Q Consensus 115 ~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~-~~l~~~~ 193 (426)
++ . + ..+.+ . ...+..+.||||||+.+........ ..+....
T Consensus 72 ~t-~--~------------------~~~~~-----~-----------~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 72 EG-L--R------------------PMMVS-----R-----------TRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cc-e--e------------------EEEEE-----E-----------EECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 11 0 0 00000 0 0145789999999998752211111 1111122
Q ss_pred HhcCCcEEEEEEe--CCCCCCchhhhhhHHHHHHHH-hhccCCeEEEEecCCCCCh
Q 014354 194 ASTFPTVVTYVVD--TPRSANPMTFMSNMLYACSIL-YKTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 194 ~~~~~d~vl~VVD--a~~~~~~~~~~~~~l~~~~~l-~~~~~P~IlVlNKiDl~~~ 246 (426)
....+|++|||.. ..+ .+..+.. ....+...+ ...-.+.|+|+++.|...+
T Consensus 115 ~~~g~DvVLyV~rLD~~R-~~~~Dkq-lLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYR-VDTLDGQ-VIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred hcCCCCEEEEEeccCccc-CCHHHHH-HHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 2235899999954 433 2221110 011111111 1334678999999998754
No 318
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.05 E-value=4.9e-09 Score=104.81 Aligned_cols=176 Identities=15% Similarity=0.077 Sum_probs=82.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
.+..|+|+|.+|+|||||+|+|.|-.....+.+.+ ++ ..|| .... .+.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~t-----Gv---~etT----~~~~-----------------~Y~--- 81 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPT-----GV---VETT----MEPT-----------------PYP--- 81 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--S-----SS---HSCC----TS-E-----------------EEE---
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCC-----CC---CcCC----CCCe-----------------eCC---
Confidence 45689999999999999999998754332221110 01 0111 0000 000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
..+-+.+++||.||+..+. .. .....+.+.-...|++|++.+.. |..+....+..+
T Consensus 82 --------------~p~~pnv~lWDlPG~gt~~--f~-~~~Yl~~~~~~~yD~fiii~s~r-------f~~ndv~La~~i 137 (376)
T PF05049_consen 82 --------------HPKFPNVTLWDLPGIGTPN--FP-PEEYLKEVKFYRYDFFIIISSER-------FTENDVQLAKEI 137 (376)
T ss_dssp ---------------SS-TTEEEEEE--GGGSS-----HHHHHHHTTGGG-SEEEEEESSS---------HHHHHHHHHH
T ss_pred --------------CCCCCCCeEEeCCCCCCCC--CC-HHHHHHHccccccCEEEEEeCCC-------CchhhHHHHHHH
Confidence 0133689999999996642 11 11122222234468877766542 222223445667
Q ss_pred hhccCCeEEEEecCCCC-ChH------hH--HHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeeccc-
Q 014354 228 YKTRLPLVLAFNKTDVA-QHE------FA--LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS- 297 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~-~~~------~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~- 297 (426)
.+.++|+.+|-+|+|.. ... .. .+.++.++. .....+.. .-....++|-||+..
T Consensus 138 ~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~-------------~c~~~L~k---~gv~~P~VFLVS~~dl 201 (376)
T PF05049_consen 138 QRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRE-------------NCLENLQK---AGVSEPQVFLVSSFDL 201 (376)
T ss_dssp HHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHH-------------HHHHHHHC---TT-SS--EEEB-TTTT
T ss_pred HHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHH-------------HHHHHHHH---cCCCcCceEEEeCCCc
Confidence 78899999999999951 100 00 011111110 00111110 112335788899865
Q ss_pred -CCCHHHHHHHHHHHHHHH
Q 014354 298 -GAGIEAYFKAVEESAQEF 315 (426)
Q Consensus 298 -g~gv~~l~~~l~~~~~~~ 315 (426)
..++..|.+.|..-+|..
T Consensus 202 ~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 202 SKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp TSTTHHHHHHHHHHHS-GG
T ss_pred ccCChHHHHHHHHHHhHHH
Confidence 446778888888776664
No 319
>PTZ00099 rab6; Provisional
Probab=99.03 E-value=1e-09 Score=99.64 Aligned_cols=117 Identities=17% Similarity=0.104 Sum_probs=70.8
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCC--chhhhhhHHHHHHHHhhccCCeEEEEecC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSILYKTRLPLVLAFNKT 241 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~--~~~~~~~~l~~~~~l~~~~~P~IlVlNKi 241 (426)
+..++.||||||+..+. .+...+ -..+|++|+|+|.+...+ ....| +..+........|+|||+||+
T Consensus 27 ~~v~l~iwDt~G~e~~~-------~~~~~~-~~~ad~~ilv~D~t~~~sf~~~~~w---~~~i~~~~~~~~piilVgNK~ 95 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFR-------SLIPSY-IRDSAAAIVVYDITNRQSFENTTKW---IQDILNERGKDVIIALVGNKT 95 (176)
T ss_pred EEEEEEEEECCChHHhh-------hccHHH-hCCCcEEEEEEECCCHHHHHHHHHH---HHHHHHhcCCCCeEEEEEECc
Confidence 34789999999997752 111111 145799999999876332 11111 111111112468899999999
Q ss_pred CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHHH
Q 014354 242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFM 316 (426)
Q Consensus 242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~ 316 (426)
|+.....+. ......+. ..+ ...++++||++|.||.++|.+|.+.+++.+
T Consensus 96 DL~~~~~v~--~~e~~~~~----------------------~~~-~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 96 DLGDLRKVT--YEEGMQKA----------------------QEY-NTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred ccccccCCC--HHHHHHHH----------------------HHc-CCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 997532110 00000000 111 245899999999999999999998877643
No 320
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=2.6e-09 Score=104.20 Aligned_cols=208 Identities=15% Similarity=0.152 Sum_probs=125.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+++++|-..+|||||+..|++.....++--+-+|.-.....+..+.+..+ ..+.+|++..|.++.. +
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsi--------s~evlGFd~~g~vVNY----~ 235 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSI--------SNEVLGFDNRGKVVNY----A 235 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCccccc--------chhcccccccccccch----h
Confidence 489999999999999999999887665432222222111111110100000 1223444444444431 1
Q ss_pred c--cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 150 T--KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 150 ~--~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
. ..++++... ..-+.|||.+|+..+.. .....+..--++++++||.|..++...+ +..+.++
T Consensus 236 ~~~taEEi~e~S-----SKlvTfiDLAGh~kY~~------TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-----rEHLgl~ 299 (591)
T KOG1143|consen 236 QNMTAEEIVEKS-----SKLVTFIDLAGHAKYQK------TTIHGLTGYTPHFACLVVSADRGITWTT-----REHLGLI 299 (591)
T ss_pred hcccHHHHHhhh-----cceEEEeecccchhhhe------eeeeecccCCCceEEEEEEcCCCCcccc-----HHHHHHH
Confidence 1 122222111 13567999999987631 1111223334799999999999998766 4566777
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchh------hhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYT------STLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv 301 (426)
...++|++++++|+|+..+..+.+..+++..++....+.+..+ ..+...... ...+-+|+|.+|..+|+|+
T Consensus 300 ~AL~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~---~s~nivPif~vSsVsGegl 376 (591)
T KOG1143|consen 300 AALNIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQEL---CSGNIVPIFAVSSVSGEGL 376 (591)
T ss_pred HHhCCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHh---ccCCceeEEEEeecCccch
Confidence 8889999999999999999887778777777666543322111 111111100 1234479999999999998
Q ss_pred HHHHHHH
Q 014354 302 EAYFKAV 308 (426)
Q Consensus 302 ~~l~~~l 308 (426)
.-|...|
T Consensus 377 ~ll~~fL 383 (591)
T KOG1143|consen 377 RLLRTFL 383 (591)
T ss_pred hHHHHHH
Confidence 7665444
No 321
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.01 E-value=3.2e-09 Score=95.71 Aligned_cols=146 Identities=14% Similarity=0.150 Sum_probs=98.4
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEecc---------------Ccccccccccccc-----
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL---------------DPAVMTLPFAANI----- 118 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~---------------d~~v~~~~~~t~i----- 118 (426)
..+.+.....+-.|+++|++|+|||||||.+.|-..+..+.+.+.+- +.-..+...-.|+
T Consensus 21 le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~ 100 (259)
T COG4525 21 LEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQ 100 (259)
T ss_pred hhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHH
Confidence 55666677788899999999999999999999988777655544332 1111111100111
Q ss_pred --chhhhH---HHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC-CcccccchhchHHHHHHH
Q 014354 119 --DIRDTI---RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWSASGAIITEA 192 (426)
Q Consensus 119 --~~r~~~---~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e~~~~~~~~~~l~~~ 192 (426)
++.... ...+.+..+|+........ -.+|++|+|++.+++++.-+++++++|.| |-.+..++..+...+.+.
T Consensus 101 l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i--~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldl 178 (259)
T COG4525 101 LRGIEKAQRREIAHQMLALVGLEGAEHKYI--WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDL 178 (259)
T ss_pred hcCCCHHHHHHHHHHHHHHhCcccccccce--EeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHH
Confidence 111111 2345677788776543222 24899999999999999999999999999 777777777777777777
Q ss_pred HHhcCCcEEEEEEe
Q 014354 193 FASTFPTVVTYVVD 206 (426)
Q Consensus 193 ~~~~~~d~vl~VVD 206 (426)
++.+..-+.++..|
T Consensus 179 w~~tgk~~lliTH~ 192 (259)
T COG4525 179 WQETGKQVLLITHD 192 (259)
T ss_pred HHHhCCeEEEEecc
Confidence 77655444444333
No 322
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.01 E-value=7e-10 Score=110.03 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=89.3
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccc------------------cccccccccc-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------------MTLPFAANID- 119 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v------------------~~~~~~t~i~- 119 (426)
..+.++...++.+++++||+||||||||+.|.|-..+.++.+.+.+.+..- ..+....||.
T Consensus 21 v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVaf 100 (352)
T COG3842 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAF 100 (352)
T ss_pred EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhh
Confidence 667778888999999999999999999999999999999988887665210 0001111111
Q ss_pred -hh-------h--hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC-Cccc
Q 014354 120 -IR-------D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIE 178 (426)
Q Consensus 120 -~r-------~--~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e 178 (426)
++ . ..++.+.++.+++...+..... .+|+|++|++.+|+++..+++++++|.| +-.+
T Consensus 101 GLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~--qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD 168 (352)
T COG3842 101 GLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH--QLSGGQQQRVALARALVPEPKVLLLDEPLSALD 168 (352)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh--hhChHHHHHHHHHHHhhcCcchhhhcCcccchh
Confidence 11 1 1256778888998887665543 6899999999999999999999999999 4444
No 323
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.99 E-value=5.6e-09 Score=93.19 Aligned_cols=69 Identities=23% Similarity=0.285 Sum_probs=44.0
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKT 241 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKi 241 (426)
...+.||||||+......+. ..+.+++ ..+|++|||+++......... .++..........+|+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~--~~~~~~~--~~~d~vi~V~~~~~~~~~~~~----~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHT--EITEEYL--PKADVVIFVVDANQDLTESDM----EFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTS--HHHHHHH--STTEEEEEEEETTSTGGGHHH----HHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhH--HHHHHhh--ccCCEEEEEeccCcccchHHH----HHHHHHhcCCCCeEEEEEcCC
Confidence 36799999999976422111 3333444 568999999999886654431 233334445556689999995
No 324
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=3.9e-09 Score=100.25 Aligned_cols=140 Identities=19% Similarity=0.207 Sum_probs=85.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
++...|+.||+.+.|||||..+|+......+...+. ..+ .....|.. +..|+..|...+-.
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~-~y~-~id~aPeE---------------k~rGITIntahvey-- 70 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAK-AYD-QIDNAPEE---------------KARGITINTAHVEY-- 70 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhcccccc-chh-hhccCchH---------------hhcCceeccceeEE--
Confidence 356789999999999999999999876443211100 000 00011111 12222222221110
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
...+..|-.+|.||+.++- ++++.. ++..|.+|+||.|..+.-+++. ..+-+
T Consensus 71 ---------------et~~rhyahVDcPGHaDYv------KNMItg--AaqmDgAILVVsA~dGpmPqTr-----EHiLl 122 (394)
T COG0050 71 ---------------ETANRHYAHVDCPGHADYV------KNMITG--AAQMDGAILVVAATDGPMPQTR-----EHILL 122 (394)
T ss_pred ---------------ecCCceEEeccCCChHHHH------HHHhhh--HHhcCccEEEEEcCCCCCCcch-----hhhhh
Confidence 0244688999999998852 222221 1346899999999999999883 33334
Q ss_pred HhhccCCeEE-EEecCCCCChHhHHHHH
Q 014354 227 LYKTRLPLVL-AFNKTDVAQHEFALEWM 253 (426)
Q Consensus 227 l~~~~~P~Il-VlNKiDl~~~~~~~~~~ 253 (426)
.++.+.|.|+ ++||+|+++..++.++.
T Consensus 123 arqvGvp~ivvflnK~Dmvdd~ellelV 150 (394)
T COG0050 123 ARQVGVPYIVVFLNKVDMVDDEELLELV 150 (394)
T ss_pred hhhcCCcEEEEEEecccccCcHHHHHHH
Confidence 6788998665 69999999976655443
No 325
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.98 E-value=1.1e-09 Score=105.85 Aligned_cols=102 Identities=20% Similarity=0.289 Sum_probs=58.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccccc
Q 014354 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTK 151 (426)
Q Consensus 72 v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~ 151 (426)
|+|+|.||||||||+|+|++.... +.++|++| ++ |+-|++.- -...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~-------------~~n~pftT----i~--------------p~~g~v~v---~d~r 46 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAE-------------AANYPFCT----IE--------------PNVGIVPV---PDER 46 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCc-------------cccccccc----hh--------------ceeeeEEe---ccch
Confidence 589999999999999999998742 56677776 21 22233321 0011
Q ss_pred HHHHHHHHHHH-hcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354 152 FDEVISLIERR-ADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPR 209 (426)
Q Consensus 152 ~~~~~~~~~~~-~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~ 209 (426)
++++....... .-..++.|+||||+....... .++..+...+ ..+|++++|||++.
T Consensus 47 ~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i--~~~D~li~VV~~f~ 104 (274)
T cd01900 47 LDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHI--REVDAIAHVVRCFE 104 (274)
T ss_pred hhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHH--HhCCEEEEEEeCcC
Confidence 11111111000 011369999999998653211 1222222222 45899999999864
No 326
>PLN00023 GTP-binding protein; Provisional
Probab=98.97 E-value=4.2e-09 Score=103.39 Aligned_cols=29 Identities=31% Similarity=0.491 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~ 95 (426)
....+|+|+|..|||||||++++++..+.
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~ 47 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSI 47 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcc
Confidence 34578999999999999999999987643
No 327
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.96 E-value=1.2e-07 Score=97.46 Aligned_cols=154 Identities=21% Similarity=0.220 Sum_probs=84.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.++.+|+++|++|+||||++..|.......+.++.++..|+.- + +. .+ ....+...+++...+.. .
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R---~-aa----~e--QL~~la~~~gvp~~~~~-~--- 158 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR---P-AA----YD--QLKQLAEKIGVPFYGDP-D--- 158 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC---H-HH----HH--HHHHHHHHcCCcEEecC-C---
Confidence 4577999999999999999999998877777888888777421 1 10 00 11112223332211000 0
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
.......+.-+.......+++||||||.... ...+-..+........++.+++|+|+..+.+. ......
T Consensus 159 --~~d~~~i~~~al~~~~~~DvVIIDTAGr~~~--d~~lm~El~~l~~~~~pdevlLVvda~~gq~a-------v~~a~~ 227 (437)
T PRK00771 159 --NKDAVEIAKEGLEKFKKADVIIVDTAGRHAL--EEDLIEEMKEIKEAVKPDEVLLVIDATIGQQA-------KNQAKA 227 (437)
T ss_pred --ccCHHHHHHHHHHHhhcCCEEEEECCCcccc--hHHHHHHHHHHHHHhcccceeEEEeccccHHH-------HHHHHH
Confidence 0111111111111223469999999997553 12222223333333457899999999775211 111121
Q ss_pred HhhccC-CeEEEEecCCCCCh
Q 014354 227 LYKTRL-PLVLAFNKTDVAQH 246 (426)
Q Consensus 227 l~~~~~-P~IlVlNKiDl~~~ 246 (426)
... .+ ..-+|+||+|....
T Consensus 228 F~~-~l~i~gvIlTKlD~~a~ 247 (437)
T PRK00771 228 FHE-AVGIGGIIITKLDGTAK 247 (437)
T ss_pred HHh-cCCCCEEEEecccCCCc
Confidence 111 22 34688999997654
No 328
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.95 E-value=6.5e-09 Score=99.89 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=89.7
Q ss_pred CCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----------------------cccccc
Q 014354 58 AGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------------------VMTLPF 114 (426)
Q Consensus 58 ~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----------------------v~~~~~ 114 (426)
+..+++...+++-+.+|+|++|||||||++.+-+...+..+.+.|.+.+-. .+....
T Consensus 21 al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV 100 (339)
T COG1135 21 ALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTV 100 (339)
T ss_pred eeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchH
Confidence 466778888999999999999999999999999999999999988886511 000111
Q ss_pred ccccc----------hhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCc
Q 014354 115 AANID----------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (426)
Q Consensus 115 ~t~i~----------~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi 176 (426)
..|+. -.-..++.++++.+|+.....-... .||+|++|++.+|+|+..++++++.|.|-.
T Consensus 101 ~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~--qLSGGQKQRVaIARALa~~P~iLL~DEaTS 170 (339)
T COG1135 101 FENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPA--QLSGGQKQRVAIARALANNPKILLCDEATS 170 (339)
T ss_pred HhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCch--hcCcchhhHHHHHHHHhcCCCEEEecCccc
Confidence 11111 0112256788999999976665543 689999999999999999999999999953
No 329
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.94 E-value=1.5e-08 Score=89.62 Aligned_cols=118 Identities=16% Similarity=0.201 Sum_probs=88.4
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------------------cccccccc-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------------------VMTLPFAA- 116 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------------------v~~~~~~t- 116 (426)
...+.....++..|+|+|++||||||||-.+.|...+.++.+++.+.+-. +.-+|.-+
T Consensus 26 L~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltA 105 (228)
T COG4181 26 LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTA 105 (228)
T ss_pred eecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchh
Confidence 56677778889999999999999999999999999999998888776510 00111111
Q ss_pred --ccc---------hh-hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC-Cccc
Q 014354 117 --NID---------IR-DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIE 178 (426)
Q Consensus 117 --~i~---------~r-~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e 178 (426)
|+. .+ ......++++++|++..-..+. ..+|++.+|++.+++++...++++|-|.| |-.+
T Consensus 106 lENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP--~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD 178 (228)
T COG4181 106 LENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP--AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLD 178 (228)
T ss_pred hhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc--cccCchHHHHHHHHHHhcCCCCEEeccCCCCCcc
Confidence 111 11 1224567899999987654443 36899999999999999999999999999 6554
No 330
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=2e-09 Score=111.37 Aligned_cols=138 Identities=21% Similarity=0.231 Sum_probs=82.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.....|+++|+.++|||+|+..|..+..+...+.. -....|+.+.... .+.|..-. .+...
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~-------e~~lrytD~l~~E---------~eRg~sIK---~~p~T 186 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNT-------EADLRYTDTLFYE---------QERGCSIK---STPVT 186 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccc-------cccccccccchhh---------HhcCceEe---ecceE
Confidence 34578999999999999999999998765432110 0111222211100 01111110 01111
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
++-... ..+.+-+.|+|||||.++. ..++..+ +.+|.+|+|||+.+++.-.. ..+++.
T Consensus 187 l~l~D~---------~~KS~l~nilDTPGHVnF~------DE~ta~l--~~sDgvVlvvDv~EGVmlnt-----Er~ikh 244 (971)
T KOG0468|consen 187 LVLSDS---------KGKSYLMNILDTPGHVNFS------DETTASL--RLSDGVVLVVDVAEGVMLNT-----ERIIKH 244 (971)
T ss_pred EEEecC---------cCceeeeeeecCCCcccch------HHHHHHh--hhcceEEEEEEcccCceeeH-----HHHHHH
Confidence 111111 1234567899999998863 2222222 44799999999999886544 234455
Q ss_pred HhhccCCeEEEEecCCCCC
Q 014354 227 LYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~ 245 (426)
..+.++|+++|+||+|+.-
T Consensus 245 aiq~~~~i~vviNKiDRLi 263 (971)
T KOG0468|consen 245 AIQNRLPIVVVINKVDRLI 263 (971)
T ss_pred HHhccCcEEEEEehhHHHH
Confidence 6678999999999999763
No 331
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.93 E-value=2.8e-09 Score=99.38 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=95.0
Q ss_pred hHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------
Q 014354 38 KEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------- 108 (426)
Q Consensus 38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------- 108 (426)
.+.|+++++.+.. .++++....++.+++||||+|||||||+|.|+|...+..+.+...+.+..
T Consensus 7 v~~l~k~FGGl~A--------l~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar 78 (250)
T COG0411 7 VRGLSKRFGGLTA--------VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIAR 78 (250)
T ss_pred eccceeecCCEEE--------EeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHh
Confidence 4567777888877 88889999999999999999999999999999999999988887766511
Q ss_pred --ccc-------ccccc---ccch--h--------------------hhHHHHHHHHHcCCCCCCCcccccccccccHHH
Q 014354 109 --VMT-------LPFAA---NIDI--R--------------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDE 154 (426)
Q Consensus 109 --v~~-------~~~~t---~i~~--r--------------------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~ 154 (426)
+.. ++.-+ |+-+ . -.-+..++++.+++.+...-.. ..|+.+.++
T Consensus 79 ~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A--~~LsyG~qR 156 (250)
T COG0411 79 LGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA--GNLSYGQQR 156 (250)
T ss_pred ccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh--hcCChhHhH
Confidence 000 00000 1101 0 0012345688888887655433 258999999
Q ss_pred HHHHHHHHhcCCCEEEEcCCC
Q 014354 155 VISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 155 ~~~~~~~~~~~~~~~liDTPG 175 (426)
++++++++..++.++++|.|-
T Consensus 157 ~LEIArALa~~P~lLLLDEPa 177 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPA 177 (250)
T ss_pred HHHHHHHHhcCCCEEEecCcc
Confidence 999999999999999999994
No 332
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.93 E-value=1.1e-08 Score=98.10 Aligned_cols=146 Identities=15% Similarity=0.114 Sum_probs=97.6
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEecc---Cccc------------------cccccccc
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL---DPAV------------------MTLPFAAN 117 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~---d~~v------------------~~~~~~t~ 117 (426)
..+.+...+.+..++++|++||||||||+.|.|-..+..+.+.+-+- |..- ..+....|
T Consensus 18 ~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~N 97 (345)
T COG1118 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADN 97 (345)
T ss_pred cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhh
Confidence 44566667788899999999999999999999999998888776655 3110 00000011
Q ss_pred cc------------hhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC-Ccccccchhc
Q 014354 118 ID------------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWSA 184 (426)
Q Consensus 118 i~------------~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e~~~~~~ 184 (426)
|. ...+.++.+++..+++..-+..... .+|+|++|++.+|+++.-.+.++++|.| |-.+..-...
T Consensus 98 IAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~--QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~ 175 (345)
T COG1118 98 IAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA--QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE 175 (345)
T ss_pred hhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCch--hcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHH
Confidence 11 1233456778888888776655543 6899999999999999999999999999 5555432333
Q ss_pred hHHHHHHHHHhcCCcEEEEEEe
Q 014354 185 SGAIITEAFASTFPTVVTYVVD 206 (426)
Q Consensus 185 ~~~~l~~~~~~~~~d~vl~VVD 206 (426)
+...+.+.........+++-.|
T Consensus 176 lr~wLr~~~~~~~~ttvfVTHD 197 (345)
T COG1118 176 LRRWLRKLHDRLGVTTVFVTHD 197 (345)
T ss_pred HHHHHHHHHHhhCceEEEEeCC
Confidence 3444444443333334444334
No 333
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.93 E-value=3.2e-09 Score=93.74 Aligned_cols=160 Identities=18% Similarity=0.208 Sum_probs=93.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
....+++|+|-.++||||++++.+...+..+..-. |
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykkt----------------I---------------------------- 53 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKT----------------I---------------------------- 53 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccc----------------c----------------------------
Confidence 35678999999999999999999976554322111 1
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCC--CCchhhhhhHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYAC 224 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~--~~~~~~~~~~l~~~ 224 (426)
+.+.+....+....+..+.+|||+|+.++. .+...+++.+.+ .++|...+.. +....-| -
T Consensus 54 ----gvdflerqi~v~~Edvr~mlWdtagqeEfD------aItkAyyrgaqa--~vLVFSTTDr~SFea~~~w------~ 115 (246)
T KOG4252|consen 54 ----GVDFLERQIKVLIEDVRSMLWDTAGQEEFD------AITKAYYRGAQA--SVLVFSTTDRYSFEATLEW------Y 115 (246)
T ss_pred ----chhhhhHHHHhhHHHHHHHHHHhccchhHH------HHHHHHhccccc--eEEEEecccHHHHHHHHHH------H
Confidence 011111112222344567799999999872 233344444444 4444444332 2222111 1
Q ss_pred HHHh--hccCCeEEEEecCCCCChHhHH-HHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354 225 SILY--KTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (426)
Q Consensus 225 ~~l~--~~~~P~IlVlNKiDl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv 301 (426)
..+. --.+|.|+|-||||++...... ...+.+. +.+ ..+.+.+|++..-+|
T Consensus 116 ~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~la-----------------k~l---------~~RlyRtSvked~NV 169 (246)
T KOG4252|consen 116 NKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLA-----------------KKL---------HKRLYRTSVKEDFNV 169 (246)
T ss_pred HHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHH-----------------HHh---------hhhhhhhhhhhhhhh
Confidence 1111 2479999999999999765321 1111111 111 123556999999999
Q ss_pred HHHHHHHHHHHHH
Q 014354 302 EAYFKAVEESAQE 314 (426)
Q Consensus 302 ~~l~~~l~~~~~~ 314 (426)
..+|.+|.+.+..
T Consensus 170 ~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 170 MHVFAYLAEKLTQ 182 (246)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877654
No 334
>PRK10867 signal recognition particle protein; Provisional
Probab=98.92 E-value=9.7e-08 Score=97.93 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=83.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccC-CceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~-~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
.++.+|+++|++||||||++-.|....... +.++.++..|+.- + ...-....+.+..++.-...- ...
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R---~-------aa~eQL~~~a~~~gv~v~~~~-~~~ 166 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR---P-------AAIEQLKTLGEQIGVPVFPSG-DGQ 166 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc---h-------HHHHHHHHHHhhcCCeEEecC-CCC
Confidence 456799999999999999999999877666 7889998887521 1 000111122233332210000 000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
+ ...-....+. .+...+++++||||||.... ...+...+........++-+++|+|+..+. .- .....
T Consensus 167 d-p~~i~~~a~~--~a~~~~~DvVIIDTaGrl~~--d~~lm~eL~~i~~~v~p~evllVlda~~gq---~a----v~~a~ 234 (433)
T PRK10867 167 D-PVDIAKAALE--EAKENGYDVVIVDTAGRLHI--DEELMDELKAIKAAVNPDEILLVVDAMTGQ---DA----VNTAK 234 (433)
T ss_pred C-HHHHHHHHHH--HHHhcCCCEEEEeCCCCccc--CHHHHHHHHHHHHhhCCCeEEEEEecccHH---HH----HHHHH
Confidence 0 0111111111 22346799999999997542 122222333333334577889999986432 11 11111
Q ss_pred HHhhccC-CeEEEEecCCCCC
Q 014354 226 ILYKTRL-PLVLAFNKTDVAQ 245 (426)
Q Consensus 226 ~l~~~~~-P~IlVlNKiDl~~ 245 (426)
.... .+ ..-+|+||.|...
T Consensus 235 ~F~~-~~~i~giIlTKlD~~~ 254 (433)
T PRK10867 235 AFNE-ALGLTGVILTKLDGDA 254 (433)
T ss_pred HHHh-hCCCCEEEEeCccCcc
Confidence 1221 22 2467889999654
No 335
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.91 E-value=2.3e-08 Score=93.45 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=68.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+|+|..||||||+.|.|+|....... .+..+.+.. +-... .
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~----------~~~~~~t~~----------------------~~~~~-----~ 44 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSG----------SSAKSVTQE----------------------CQKYS-----G 44 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS------------TTTSS--SS-----------------------EEEE-----E
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeec----------cccCCcccc----------------------cceee-----e
Confidence 6899999999999999999998753210 111111110 00000 0
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccch-hchHHHHHHHHHh--cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~--~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
...+..+.||||||+.+.... ......+.+.+.. ..++++|+|+... .++..+.. ....+...+
T Consensus 45 -----------~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~-~l~~l~~~F 111 (212)
T PF04548_consen 45 -----------EVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDRE-VLELLQEIF 111 (212)
T ss_dssp -----------EETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHH-HHHHHHHHH
T ss_pred -----------eecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHH-HHHHHHHHc
Confidence 024578999999999765211 1111223333322 2378999999987 44432211 001111111
Q ss_pred h-hccCCeEEEEecCCCCChHhHHHH
Q 014354 228 Y-KTRLPLVLAFNKTDVAQHEFALEW 252 (426)
Q Consensus 228 ~-~~~~P~IlVlNKiDl~~~~~~~~~ 252 (426)
. ..-.-+|||++..|......+.+.
T Consensus 112 G~~~~k~~ivvfT~~d~~~~~~~~~~ 137 (212)
T PF04548_consen 112 GEEIWKHTIVVFTHADELEDDSLEDY 137 (212)
T ss_dssp CGGGGGGEEEEEEEGGGGTTTTHHHH
T ss_pred cHHHHhHhhHHhhhccccccccHHHH
Confidence 1 223347889999998877654333
No 336
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.91 E-value=1.5e-08 Score=93.48 Aligned_cols=152 Identities=19% Similarity=0.206 Sum_probs=82.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
+.+++++|++||||||.+-+|.......+.++.++..|..- .+. .+ ..+..-+.+++. +.....-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R----~ga----~e--QL~~~a~~l~vp-----~~~~~~~ 65 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR----IGA----VE--QLKTYAEILGVP-----FYVARTE 65 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS----THH----HH--HHHHHHHHHTEE-----EEESSTT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC----ccH----HH--HHHHHHHHhccc-----cchhhcc
Confidence 46899999999999999999999887778888888766321 010 11 111112222211 0000000
Q ss_pred cc---cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 149 TT---KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 149 s~---~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
.+ -..+.+. ....++++++||||||.... ....-..+.+.+....++-+++|++++.+...... +..
T Consensus 66 ~~~~~~~~~~l~--~~~~~~~D~vlIDT~Gr~~~--d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~------~~~ 135 (196)
T PF00448_consen 66 SDPAEIAREALE--KFRKKGYDLVLIDTAGRSPR--DEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQ------ALA 135 (196)
T ss_dssp SCHHHHHHHHHH--HHHHTTSSEEEEEE-SSSST--HHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHH------HHH
T ss_pred hhhHHHHHHHHH--HHhhcCCCEEEEecCCcchh--hHHHHHHHHHHhhhcCCccceEEEecccChHHHHH------HHH
Confidence 11 1111111 12245689999999998653 12222334444444567899999999765432221 111
Q ss_pred HHhhccCCeEEEEecCCCCCh
Q 014354 226 ILYKTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~ 246 (426)
....--+.=+|++|.|-...
T Consensus 136 -~~~~~~~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 136 -FYEAFGIDGLILTKLDETAR 155 (196)
T ss_dssp -HHHHSSTCEEEEESTTSSST
T ss_pred -HhhcccCceEEEEeecCCCC
Confidence 11222245677999998764
No 337
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.91 E-value=2.1e-09 Score=97.33 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=85.3
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------ccccccccccc----hhh---
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANID----IRD--- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i~----~r~--- 122 (426)
..+++.....+.+++|+|++||||||+|+.|..-..+..+.++|.+.|.. +...++...+- .+.
T Consensus 18 vrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~ 97 (245)
T COG4555 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLK 97 (245)
T ss_pred hhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHH
Confidence 55667778889999999999999999999999999999999999988732 11112222111 111
Q ss_pred -------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 123 -------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
..++.++++.+++..- +-.-..-||+|+++++.+|+++..++.++++|.|
T Consensus 98 ~Fa~L~~l~~~~~kari~~l~k~l~l~~~--~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP 160 (245)
T COG4555 98 YFARLNGLSRKEIKARIAELSKRLQLLEY--LDRRVGEFSTGMKQKVAIARALVHDPSILVLDEP 160 (245)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHhChHHH--HHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCC
Confidence 2245677888886642 2222234899999999999999999999999999
No 338
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.89 E-value=1e-08 Score=101.27 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=84.7
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------------cccccccc---ccc-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------------VMTLPFAA---NID- 119 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------------v~~~~~~t---~i~- 119 (426)
..+.+.....+.+++|+||+||||||||+.|.|-..+.++.+.|.+.+-. ..-+|+-+ |+.
T Consensus 19 l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf 98 (338)
T COG3839 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAF 98 (338)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhh
Confidence 45566777888999999999999999999999999999988888766511 01112211 111
Q ss_pred -hh--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCc
Q 014354 120 -IR--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (426)
Q Consensus 120 -~r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi 176 (426)
++ ..-+++++.+.+++..-..-. -..+|+|++|++++++++..++++.++|.|=.
T Consensus 99 ~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~--P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlS 162 (338)
T COG3839 99 GLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRK--PLQLSGGQRQRVALARALVRKPKVFLLDEPLS 162 (338)
T ss_pred hhhhCCCchHHHHHHHHHHHHHcCChhHHhcC--cccCChhhHHHHHHHHHHhcCCCEEEecCchh
Confidence 11 122456778888877543322 23589999999999999999999999999954
No 339
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.89 E-value=9.2e-09 Score=93.93 Aligned_cols=143 Identities=13% Similarity=0.130 Sum_probs=96.7
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc------------------ccccccccccch
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------------------VMTLPFAANIDI 120 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~------------------v~~~~~~t~i~~ 120 (426)
....+...+++.+++|+||+|+||||||+.|+|...+.++.+.+.+.+.. ...+||+.
T Consensus 17 l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv---- 92 (259)
T COG4559 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTV---- 92 (259)
T ss_pred ccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEH----
Confidence 56677778889999999999999999999999999989888888777621 11222221
Q ss_pred hhhH------------------HHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcC------CCEEEEcCCCc
Q 014354 121 RDTI------------------RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADH------LDYVLVDTPGQ 176 (426)
Q Consensus 121 r~~~------------------~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~------~~~~liDTPGi 176 (426)
++.+ -..+.|...++....+-.+ ..+|+|.++++.+++.+..- ..|+|+|.|-.
T Consensus 93 ~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y--~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPts 170 (259)
T COG4559 93 QEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY--RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTS 170 (259)
T ss_pred HHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch--hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCcc
Confidence 2211 1345677777665555433 25899999999999877542 35889999954
Q ss_pred ccccchhchHHHHHHHHHhcCCcEEEEEEeC
Q 014354 177 IEIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (426)
Q Consensus 177 ~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa 207 (426)
.---.|......+.+.+....+-+++++.|.
T Consensus 171 aLDi~HQ~~tl~laR~la~~g~~V~~VLHDL 201 (259)
T COG4559 171 ALDIAHQHHTLRLARQLAREGGAVLAVLHDL 201 (259)
T ss_pred ccchHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence 2211223333445566665556666666675
No 340
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.88 E-value=2.4e-09 Score=99.99 Aligned_cols=162 Identities=18% Similarity=0.221 Sum_probs=101.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
-.+|+++|+|.+|||||+..|++.... |..+.+++.+.+ .|+..
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~-------------vasyefttl~~v------------------pG~~~----- 102 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSE-------------VAAYEFTTLTTV------------------PGVIR----- 102 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCc-------------cccccceeEEEe------------------cceEe-----
Confidence 348999999999999999999998633 444444542211 12221
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHH------
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML------ 221 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l------ 221 (426)
.++..+++.|.||+++....+ ..++++.... .-|.+++.|+|....++........+
T Consensus 103 --------------y~gaKiqlldlpgiiegakdgkgrg~qviava--rtcnli~~vld~~kp~~hk~~ie~eleg~gir 166 (358)
T KOG1487|consen 103 --------------YKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVA--RTCNLIFIVLDVLKPLSHKKIIEKELEGFGIR 166 (358)
T ss_pred --------------ccccceeeecCcchhcccccCCCCccEEEEEe--ecccEEEEEeeccCcccHHHHHHHhhhcceee
Confidence 356899999999999964321 1333332211 23688889999866544322111110
Q ss_pred -------------------------------HH-------------------HHHH---h--hccCCeEEEEecCCCCCh
Q 014354 222 -------------------------------YA-------------------CSIL---Y--KTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 222 -------------------------------~~-------------------~~~l---~--~~~~P~IlVlNKiDl~~~ 246 (426)
.+ -+++ . ..-+|.|.++||+|-++-
T Consensus 167 lnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISi 246 (358)
T KOG1487|consen 167 LNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATADDLIDVVEGNRIYVPCIYVLNKIDSISI 246 (358)
T ss_pred ccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchhhhhhhhccCceeeeeeeeecccceeee
Confidence 00 0111 1 124688899999998876
Q ss_pred HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 247 EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 247 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
+++.- .|.....+++||-+++++++++..+.+.+.-
T Consensus 247 EELdi--------------------------------i~~iphavpISA~~~wn~d~lL~~mweyL~L 282 (358)
T KOG1487|consen 247 EELDI--------------------------------IYTIPHAVPISAHTGWNFDKLLEKMWEYLKL 282 (358)
T ss_pred eccce--------------------------------eeeccceeecccccccchHHHHHHHhhcchh
Confidence 54321 1233458999999999999999888776544
No 341
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.87 E-value=5.5e-07 Score=92.38 Aligned_cols=155 Identities=18% Similarity=0.197 Sum_probs=83.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccc-cCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ-SRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~-~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
.++.+++++|++|+||||++-.|..... ..+.++.++..|+.- | .....++.+.++.++...... ...
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R---~-------~a~~QL~~~a~~~gvp~~~~~-~~~ 165 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR---P-------AAIEQLKVLGQQVGVPVFALG-KGQ 165 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc---h-------HHHHHHHHHHHhcCCceEecC-CCC
Confidence 3567999999999999999999998854 457889988887521 1 000111222233332211100 000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
. ........+.. +...+++++||||||.... ....-..+........++-+++|+|+..+.+.. ....
T Consensus 166 ~-P~~i~~~al~~--~~~~~~DvVIIDTaGr~~~--d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~-------~~a~ 233 (428)
T TIGR00959 166 S-PVEIARRALEY--AKENGFDVVIVDTAGRLQI--DEELMEELAAIKEILNPDEILLVVDAMTGQDAV-------NTAK 233 (428)
T ss_pred C-HHHHHHHHHHH--HHhcCCCEEEEeCCCcccc--CHHHHHHHHHHHHhhCCceEEEEEeccchHHHH-------HHHH
Confidence 0 00011111112 2356789999999997542 122222333333334578899999986432111 1111
Q ss_pred HHh-hccCCeEEEEecCCCCC
Q 014354 226 ILY-KTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 226 ~l~-~~~~P~IlVlNKiDl~~ 245 (426)
... ..+ ..=+|+||+|...
T Consensus 234 ~f~~~v~-i~giIlTKlD~~~ 253 (428)
T TIGR00959 234 TFNERLG-LTGVVLTKLDGDA 253 (428)
T ss_pred HHHhhCC-CCEEEEeCccCcc
Confidence 111 222 3467899999554
No 342
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.87 E-value=1.1e-08 Score=94.82 Aligned_cols=117 Identities=11% Similarity=0.120 Sum_probs=80.9
Q ss_pred cCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccc-----------------------ccc
Q 014354 57 LAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-----------------------TLP 113 (426)
Q Consensus 57 ~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~-----------------------~~~ 113 (426)
.+..+++....++..|+|+|++||||||||++|.+...+..+.+.+-+.++.-. ...
T Consensus 18 ~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~s 97 (258)
T COG3638 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLS 97 (258)
T ss_pred eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccH
Confidence 346677777889999999999999999999999997766666665555442100 000
Q ss_pred cccccc------------------hhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 114 FAANID------------------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 114 ~~t~i~------------------~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.-+|+- ..+....=+.++++|+....-.-+ +.||+|++|++++|+++..++++++-|.|=
T Consensus 98 v~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--~~LSGGQQQRVaIARaL~Q~pkiILADEPv 175 (258)
T COG3638 98 VLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--STLSGGQQQRVAIARALVQQPKIILADEPV 175 (258)
T ss_pred HHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh--ccCCcchhHHHHHHHHHhcCCCEEecCCcc
Confidence 000000 111222234577787776543333 368999999999999999999999999994
No 343
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.86 E-value=4.1e-08 Score=98.41 Aligned_cols=153 Identities=14% Similarity=0.209 Sum_probs=84.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
++.+|+|+|++||||||++.+|.......+.++.++..|+.-. +. .. ......+..+ ..+....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~Ri----aA----vE--QLk~yae~lg-----ipv~v~~- 303 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRI----GT----VQ--QLQDYVKTIG-----FEVIAVR- 303 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcch----HH----HH--HHHHHhhhcC-----CcEEecC-
Confidence 4578999999999999999999998777777888887775210 00 00 0111111222 1111000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
-...+...+..+.. ..+++++||||||.... ....-..+.+.+....++.+++|+|+....... ..+...+
T Consensus 304 d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~k--d~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~------~~i~~~F 374 (436)
T PRK11889 304 DEAAMTRALTYFKE-EARVDYILIDTAGKNYR--ASETVEEMIETMGQVEPDYICLTLSASMKSKDM------IEIITNF 374 (436)
T ss_pred CHHHHHHHHHHHHh-ccCCCEEEEeCccccCc--CHHHHHHHHHHHhhcCCCeEEEEECCccChHHH------HHHHHHh
Confidence 01122221111110 12589999999998542 122223344444445578889999986433221 1222222
Q ss_pred hhccCCeEEEEecCCCCCh
Q 014354 228 YKTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~ 246 (426)
... -..=+|++|.|-...
T Consensus 375 ~~~-~idglI~TKLDET~k 392 (436)
T PRK11889 375 KDI-HIDGIVFTKFDETAS 392 (436)
T ss_pred cCC-CCCEEEEEcccCCCC
Confidence 222 245789999998764
No 344
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=4.4e-09 Score=93.77 Aligned_cols=162 Identities=19% Similarity=0.263 Sum_probs=98.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..+-..|+++|--||||||+|.+|-..... ...| +++ .-+-+.
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~v--------------ttvP---TiG--------------------fnVE~v 56 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIV--------------TTVP---TIG--------------------FNVETV 56 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcc--------------cCCC---ccc--------------------cceeEE
Confidence 445678999999999999999998766532 1122 110 001111
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHH-HHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITE-AFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~-~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
. .++..+.+||.-|+.... .+.. ++ ...+.+|||||+.....-.. ......
T Consensus 57 ~----------------ykn~~f~vWDvGGq~k~R-------~lW~~Y~--~~t~~lIfVvDS~Dr~Ri~e---ak~eL~ 108 (181)
T KOG0070|consen 57 E----------------YKNISFTVWDVGGQEKLR-------PLWKHYF--QNTQGLIFVVDSSDRERIEE---AKEELH 108 (181)
T ss_pred E----------------EcceEEEEEecCCCcccc-------cchhhhc--cCCcEEEEEEeCCcHHHHHH---HHHHHH
Confidence 1 245789999999996642 1111 22 23589999999975332211 111222
Q ss_pred HHHhh---ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354 225 SILYK---TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (426)
Q Consensus 225 ~~l~~---~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv 301 (426)
..+.. ...|+++..||.|+...-...++.+.+. +.. + .. ..| -+-.++|.+|.|+
T Consensus 109 ~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~-l~~-l--------------~~--~~w----~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 109 RMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLG-LHS-L--------------RS--RNW----HIQSTCAISGEGL 166 (181)
T ss_pred HHHcCcccCCceEEEEechhhccccCCHHHHHhHhh-hhc-c--------------CC--CCc----EEeeccccccccH
Confidence 22332 3689999999999987654444433332 000 0 00 123 3788999999999
Q ss_pred HHHHHHHHHHHHH
Q 014354 302 EAYFKAVEESAQE 314 (426)
Q Consensus 302 ~~l~~~l~~~~~~ 314 (426)
.+-++++...+..
T Consensus 167 ~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 167 YEGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877643
No 345
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.85 E-value=3.7e-08 Score=88.01 Aligned_cols=110 Identities=16% Similarity=0.142 Sum_probs=80.9
Q ss_pred CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------ccccccccc----------cc------
Q 014354 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFAAN----------ID------ 119 (426)
Q Consensus 64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~t~----------i~------ 119 (426)
.....+.+|+|+|++|||||||+|.|.|-..+..+.+.|.+.|-+ |+.+-+..| ++
T Consensus 20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~ 99 (231)
T COG3840 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG 99 (231)
T ss_pred EeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc
Confidence 345677899999999999999999999999999999999887721 221111111 11
Q ss_pred ----hhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 120 ----IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 120 ----~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
-.++.+++.+..++|+.....-.. ..+|+|.+|++.+++++..+..+.++|.|=
T Consensus 100 LkL~a~~r~~v~~aa~~vGl~~~~~RLP--~~LSGGqRQRvALARclvR~~PilLLDEPF 157 (231)
T COG3840 100 LKLNAEQREKVEAAAAQVGLAGFLKRLP--GELSGGQRQRVALARCLVREQPILLLDEPF 157 (231)
T ss_pred cccCHHHHHHHHHHHHHhChhhHhhhCc--cccCchHHHHHHHHHHHhccCCeEEecCch
Confidence 123345566677777664433333 258999999999999999999999999993
No 346
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.85 E-value=2.6e-08 Score=95.92 Aligned_cols=147 Identities=19% Similarity=0.195 Sum_probs=97.9
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccc---------------------cccccc-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------------------TLPFAA- 116 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~---------------------~~~~~t- 116 (426)
..+.+.....+.+.+|+|.+|||||||+++|-+...+..+.+.+.+.|..-. -+|+-+
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtV 123 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTV 123 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhH
Confidence 5677778889999999999999999999999999999999998887773211 111111
Q ss_pred --ccc-------h---hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC-Ccccccchh
Q 014354 117 --NID-------I---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWS 183 (426)
Q Consensus 117 --~i~-------~---r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e~~~~~ 183 (426)
|+. + ...-+..++++.+||..-..-.. +.||+||+|++.+|+++..+++++++|.| .-.+|.-+.
T Consensus 124 l~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp--~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~ 201 (386)
T COG4175 124 LENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP--NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT 201 (386)
T ss_pred hhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc--ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHH
Confidence 000 0 01113345666777664433322 46999999999999999999999999999 334443344
Q ss_pred chHHHHHHHHHhcCCcEEEEEEeC
Q 014354 184 ASGAIITEAFASTFPTVVTYVVDT 207 (426)
Q Consensus 184 ~~~~~l~~~~~~~~~d~vl~VVDa 207 (426)
.+...+.+..+...-.++..-.|.
T Consensus 202 ~mQdeLl~Lq~~l~KTIvFitHDL 225 (386)
T COG4175 202 EMQDELLELQAKLKKTIVFITHDL 225 (386)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCH
Confidence 445555555444333444444444
No 347
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.83 E-value=1.3e-07 Score=85.25 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=80.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc--cc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN--LF 148 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~--~l 148 (426)
+++++|+||+||||+...+.......+.++.++..|+.-.. .......+.+..++. +..... ..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~----------~~~~l~~~~~~~~~~----~~~~~~~~~~ 67 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPA----------AIEQLRVLGEQVGVP----VFEEGEGKDP 67 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChH----------HHHHHHHhcccCCeE----EEecCCCCCH
Confidence 58999999999999999999877666778888887752110 000011111122211 111000 00
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~ 228 (426)
.....+.+.. ....+++++|+||||..... ...-..+........++.+++|+++........ ....+..
T Consensus 68 ~~~~~~~~~~--~~~~~~d~viiDt~g~~~~~--~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~------~~~~~~~ 137 (173)
T cd03115 68 VSIAKRAIEH--AREENFDVVIVDTAGRLQID--ENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVN------QAKAFNE 137 (173)
T ss_pred HHHHHHHHHH--HHhCCCCEEEEECcccchhh--HHHHHHHHHHHhhcCCCeEEEEEECCCChHHHH------HHHHHHh
Confidence 1111111111 23567899999999985421 111111222222234789999999853322111 1122222
Q ss_pred hccCCeEEEEecCCCCChH
Q 014354 229 KTRLPLVLAFNKTDVAQHE 247 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~ 247 (426)
..+ ..-+|+||+|.....
T Consensus 138 ~~~-~~~viltk~D~~~~~ 155 (173)
T cd03115 138 ALG-ITGVILTKLDGDARG 155 (173)
T ss_pred hCC-CCEEEEECCcCCCCc
Confidence 334 467889999987653
No 348
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.82 E-value=5e-09 Score=90.45 Aligned_cols=110 Identities=20% Similarity=0.246 Sum_probs=76.3
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc----chh---hhHHHH
Q 014354 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI----DIR---DTIRYK 127 (426)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i----~~r---~~~~~~ 127 (426)
...++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.. +..+++...+ .++ ...++.
T Consensus 7 ~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~ 86 (137)
T PF00005_consen 7 EIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIE 86 (137)
T ss_dssp EEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHH
T ss_pred EEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34567899999999999999999999998877777666543311 1111111110 012 222566
Q ss_pred HHHHHcCCCCC--CCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 128 EVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 128 ~~~~~~~l~~n--g~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
++++.+++... ..+-.....||++.++++.++.++..+++++|+|.|
T Consensus 87 ~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEP 135 (137)
T PF00005_consen 87 EVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEP 135 (137)
T ss_dssp HHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEEST
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 77888886652 122222256999999999999999999999999998
No 349
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.82 E-value=5e-08 Score=94.47 Aligned_cols=129 Identities=17% Similarity=0.149 Sum_probs=87.0
Q ss_pred hhHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------
Q 014354 37 EKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------- 108 (426)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------- 108 (426)
....+...++...+ ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..
T Consensus 26 ~~~~~~~~~~~~~i--------l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~ 97 (269)
T cd03294 26 SKEEILKKTGQTVG--------VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELR 97 (269)
T ss_pred hhhhhhhhcCCceE--------eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhh
Confidence 44566666665544 56677777888999999999999999999999998777776665442210
Q ss_pred ------cccccccccc----chhh----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHH
Q 014354 109 ------VMTLPFAANI----DIRD----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERR 162 (426)
Q Consensus 109 ------v~~~~~~t~i----~~r~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~ 162 (426)
+...++...+ .+.+ ...+.++++.+++.+.. -.....+|+|+++++.+++++
T Consensus 98 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWE--HKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred hhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh--hCCcccCCHHHHHHHHHHHHH
Confidence 1111111100 0111 11245567788875421 122235899999999999999
Q ss_pred hcCCCEEEEcCCC
Q 014354 163 ADHLDYVLVDTPG 175 (426)
Q Consensus 163 ~~~~~~~liDTPG 175 (426)
..+++++|+|.|=
T Consensus 176 ~~~p~illLDEPt 188 (269)
T cd03294 176 AVDPDILLMDEAF 188 (269)
T ss_pred hcCCCEEEEcCCC
Confidence 9999999999993
No 350
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=5.3e-08 Score=90.80 Aligned_cols=115 Identities=13% Similarity=0.102 Sum_probs=78.7
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------ccccccccccc----chhh----
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------AVMTLPFAANI----DIRD---- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------~v~~~~~~t~i----~~r~---- 122 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+...++...+ .+++
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 95 (213)
T cd03259 16 LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAF 95 (213)
T ss_pred ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHh
Confidence 4556666778889999999999999999999998877777766544321 01111211100 0111
Q ss_pred ------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 123 ------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 123 ------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
...+.++++.+++..... .....+|+|+++++.+++++..+++++|+|.|-
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt 158 (213)
T cd03259 96 GLKLRGVPKAEIRARVRELLELVGLEGLLN--RYPHELSGGQQQRVALARALAREPSLLLLDEPL 158 (213)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhhhh--cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 112345677888754211 222458999999999999999999999999993
No 351
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=9e-09 Score=105.99 Aligned_cols=135 Identities=17% Similarity=0.156 Sum_probs=87.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCC-CCccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN-GGILTSL 145 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~n-g~i~~~~ 145 (426)
.+...|+|+-+-.||||||-++++....-......+.+.+......+ .-++.|+... ++..+.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~---------------~er~rgITiqSAAt~~~- 100 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSME---------------LERQRGITIQSAATYFT- 100 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHH---------------HHHhcCceeeeceeeee-
Confidence 46678999999999999999999876432222111111111111111 1122333222 223332
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
+..+.+.+||||||.++. -...+ .+ .-.|-+|+|+|+..+...++ ....+
T Consensus 101 -----------------w~~~~iNiIDTPGHvDFT--~EVeR----AL--rVlDGaVlvl~aV~GVqsQt-----~tV~r 150 (721)
T KOG0465|consen 101 -----------------WRDYRINIIDTPGHVDFT--FEVER----AL--RVLDGAVLVLDAVAGVESQT-----ETVWR 150 (721)
T ss_pred -----------------eccceeEEecCCCceeEE--EEehh----hh--hhccCeEEEEEcccceehhh-----HHHHH
Confidence 456899999999999972 11111 11 12488999999999998887 45677
Q ss_pred HHhhccCCeEEEEecCCCCChH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHE 247 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~ 247 (426)
.+.+.++|.|..+||+|+....
T Consensus 151 Q~~ry~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 151 QMKRYNVPRICFINKMDRMGAS 172 (721)
T ss_pred HHHhcCCCeEEEEehhhhcCCC
Confidence 8899999999999999998753
No 352
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.79 E-value=4.7e-08 Score=96.27 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=80.9
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccccc----chhh---
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----DIRD--- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i----~~r~--- 122 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++...+ .+++
T Consensus 9 l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 88 (302)
T TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLE 88 (302)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHH
Confidence 44566667788999999999999999999999998888777776554321 1222222111 0111
Q ss_pred -------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 123 -------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
..++.++++.+++.... -.....||+|+++++.++.++..+++++|+|.|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 151 (302)
T TIGR01188 89 MMGRLYGLPKDEAEERAEELLELFELGEAA--DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEP 151 (302)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHh--CCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 11345678888886421 222346899999999999999999999999999
No 353
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.79 E-value=5.3e-08 Score=88.51 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=77.0
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhH-HHHHHHHHcCCCC
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTI-RYKEVMKQFNLGP 137 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~-~~~~~~~~~~l~~ 137 (426)
..+.+....++.+++|+|++|+|||||++.|.|...+..+.+.+.+.+.. ..... ..+..+ .+-++++.+++..
T Consensus 15 l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~--~~~~~---~~~~~i~~~~q~l~~~gl~~ 89 (180)
T cd03214 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA--SLSPK---ELARKIAYVPQALELLGLAH 89 (180)
T ss_pred EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC--cCCHH---HHHHHHhHHHHHHHHcCCHh
Confidence 34455666788899999999999999999999998888887776543321 11000 011111 1223667777654
Q ss_pred CCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 138 NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 138 ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
. +-.....+|+|+++++.+++++..+++++++|.|
T Consensus 90 ~--~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 124 (180)
T cd03214 90 L--ADRPFNELSGGERQRVLLARALAQEPPILLLDEP 124 (180)
T ss_pred H--hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 2 1122345899999999999999999999999999
No 354
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.79 E-value=6.3e-08 Score=90.78 Aligned_cols=115 Identities=15% Similarity=0.091 Sum_probs=77.8
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-----cccccccc-------c---ccchh--
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-----AVMTLPFA-------A---NIDIR-- 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-----~v~~~~~~-------t---~i~~r-- 121 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+...++. + ++...
T Consensus 20 l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 99 (220)
T cd03293 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLE 99 (220)
T ss_pred EeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHH
Confidence 3455566678889999999999999999999999877777666543221 11111111 1 11110
Q ss_pred --------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 122 --------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 122 --------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
....+.++++.+++.... -.....||+|+++++.+++++..+++++|+|.|-
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt 159 (220)
T cd03293 100 LQGVPKAEARERAEELLELVGLSGFE--NAYPHQLSGGMRQRVALARALAVDPDVLLLDEPF 159 (220)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhhh--hCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 011245567888875421 1222458999999999999999999999999993
No 355
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.79 E-value=3.8e-08 Score=93.60 Aligned_cols=115 Identities=12% Similarity=0.139 Sum_probs=77.9
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------ccccccccc----cchh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAAN----IDIR 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~----i~~r 121 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +..+++... ..+.
T Consensus 18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 97 (243)
T TIGR02315 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVL 97 (243)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHH
Confidence 45566667788899999999999999999999998777776665443210 111111110 0011
Q ss_pred h------------------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 122 D------------------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 122 ~------------------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+ ..++.++++.+++.... -.....||+|+++++.+++++..+++++|+|.|-
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 173 (243)
T TIGR02315 98 ENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA--YQRADQLSGGQQQRVAIARALAQQPDLILADEPI 173 (243)
T ss_pred HHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh--cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1 11234567777765321 1223458999999999999999999999999993
No 356
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.79 E-value=1.8e-08 Score=94.05 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=86.1
Q ss_pred CCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC--------------------ccccccccccc
Q 014354 58 AGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD--------------------PAVMTLPFAAN 117 (426)
Q Consensus 58 ~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d--------------------~~v~~~~~~t~ 117 (426)
..++++....++.+++|+|.+|||||||.+.|+|...+..+.+.+.+.. |..+--|..+
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t- 100 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT- 100 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh-
Confidence 3677788888999999999999999999999999999988888776632 2222222221
Q ss_pred cc--hhhhH----------HHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 118 ID--IRDTI----------RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 118 i~--~r~~~----------~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+. +.+.. +..++++.+|+.+.---.. -..||+|++|++++++|+.-+++++|.|.|=
T Consensus 101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~-P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt 169 (252)
T COG1124 101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRR-PHELSGGQRQRIAIARALIPEPKLLILDEPT 169 (252)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcC-chhcChhHHHHHHHHHHhccCCCEEEecCch
Confidence 10 11111 2567889999887422222 2348999999999999999999999999995
No 357
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=7.4e-08 Score=91.24 Aligned_cols=115 Identities=16% Similarity=0.107 Sum_probs=78.6
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccccc----chh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAANI----DIR 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~i----~~r 121 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +..+++...+ .+.
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 95 (235)
T cd03261 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVF 95 (235)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHH
Confidence 44556667788899999999999999999999998777777665443210 1111111100 001
Q ss_pred h-----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 122 D-----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 122 ~-----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+ ...+.++++.+++.... -.....||+|+++++.+++++..+++++|+|.|-
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 164 (235)
T cd03261 96 ENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE--DLYPAELSGGMKKRVALARALALDPELLLYDEPT 164 (235)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh--cCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 1 11234567788875422 2223468999999999999999999999999993
No 358
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.78 E-value=7.5e-08 Score=89.24 Aligned_cols=115 Identities=14% Similarity=0.085 Sum_probs=79.6
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-------cccccccccc--c---chhh----
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-------AVMTLPFAAN--I---DIRD---- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-------~v~~~~~~t~--i---~~r~---- 122 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+...++... + .+++
T Consensus 16 l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~ 95 (205)
T cd03226 16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLL 95 (205)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhh
Confidence 4455566678889999999999999999999999877777666544331 1111111110 0 0111
Q ss_pred --------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 123 --------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 123 --------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
..++.++++.+++.... -.....+|+|+++++.+++++..+++++|+|.|-
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 154 (205)
T cd03226 96 GLKELDAGNEQAETVLKDLDLYALK--ERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT 154 (205)
T ss_pred hhhhcCccHHHHHHHHHHcCCchhc--CCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 12345678888876432 2223468999999999999999999999999994
No 359
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.78 E-value=2.3e-08 Score=98.69 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=82.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccccc----chhhh--
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----DIRDT-- 123 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i----~~r~~-- 123 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.++. +...|+...+ ..++.
T Consensus 23 l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~ 102 (306)
T PRK13537 23 VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLL 102 (306)
T ss_pred EecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHH
Confidence 56677777888999999999999999999999998888888777655421 1111211111 01111
Q ss_pred --------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 124 --------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 124 --------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.++.++++.+++.... -...+.||+|+++++.++.++..+++++|+|.|-
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt 166 (306)
T PRK13537 103 VFGRYFGLSAAAARALVPPLLEFAKLENKA--DAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT 166 (306)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchHh--cCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 1234667788876422 2223469999999999999999999999999993
No 360
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.78 E-value=6.8e-08 Score=97.86 Aligned_cols=130 Identities=17% Similarity=0.178 Sum_probs=90.2
Q ss_pred hhhhHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEecc----Cc---
Q 014354 35 DKEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL----DP--- 107 (426)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~----d~--- 107 (426)
+.-++++.+.++.... ..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+. +.
T Consensus 24 g~~~~~~~~~~g~~~~--------l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~ 95 (382)
T TIGR03415 24 GKTREEILDETGLVVG--------VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANC 95 (382)
T ss_pred CCCHHHHHHhhCCEEE--------EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccC
Confidence 3345556666665544 56677778889999999999999999999999998888888877542 10
Q ss_pred -----------ccccccccccc----chhh----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHH
Q 014354 108 -----------AVMTLPFAANI----DIRD----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVI 156 (426)
Q Consensus 108 -----------~v~~~~~~t~i----~~r~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~ 156 (426)
.+...++...+ .+.+ ..++.++++.+++..... .....||+|+++++
T Consensus 96 ~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~--~~~~~LSgGq~QRV 173 (382)
T TIGR03415 96 DAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWAD--KKPGELSGGMQQRV 173 (382)
T ss_pred CHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc--CChhhCCHHHHHHH
Confidence 01111111110 0111 123456788888864322 22345899999999
Q ss_pred HHHHHHhcCCCEEEEcCC
Q 014354 157 SLIERRADHLDYVLVDTP 174 (426)
Q Consensus 157 ~~~~~~~~~~~~~liDTP 174 (426)
.+++++..+++++|+|.|
T Consensus 174 ~LARALa~~P~ILLlDEP 191 (382)
T TIGR03415 174 GLARAFAMDADILLMDEP 191 (382)
T ss_pred HHHHHHhcCCCEEEEECC
Confidence 999999999999999999
No 361
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.2e-07 Score=96.67 Aligned_cols=146 Identities=20% Similarity=0.273 Sum_probs=92.9
Q ss_pred CCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcc
Q 014354 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL 142 (426)
Q Consensus 63 ~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~ 142 (426)
+...+++++|+|+||||+|||||+..|+...... .+.. + .|.+
T Consensus 63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~-----------ti~~--------i------------------~GPi 105 (1077)
T COG5192 63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ-----------TIDE--------I------------------RGPI 105 (1077)
T ss_pred cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHh-----------hhhc--------c------------------CCce
Confidence 3445677888899999999999999999875321 0100 0 1212
Q ss_pred cccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH
Q 014354 143 TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY 222 (426)
Q Consensus 143 ~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~ 222 (426)
+-. + ++...+.|+++|. +. ..+++..+ .+|+|+++||+..|+.-.+ +.
T Consensus 106 Tvv---s-------------gK~RRiTflEcp~--Dl-------~~miDvaK--IaDLVlLlIdgnfGfEMET-----mE 153 (1077)
T COG5192 106 TVV---S-------------GKTRRITFLECPS--DL-------HQMIDVAK--IADLVLLLIDGNFGFEMET-----ME 153 (1077)
T ss_pred EEe---e-------------cceeEEEEEeChH--HH-------HHHHhHHH--hhheeEEEeccccCceehH-----HH
Confidence 110 1 3456889999993 22 13333332 3599999999998887765 44
Q ss_pred HHHHHhhccCCeEE-EEecCCCCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeeccc
Q 014354 223 ACSILYKTRLPLVL-AFNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS 297 (426)
Q Consensus 223 ~~~~l~~~~~P~Il-VlNKiDl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~ 297 (426)
.+.++...+.|-|+ |++..|+.+... +......++ ...+.+.|..+..|.+|...
T Consensus 154 FLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlk--------------------hRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 154 FLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLK--------------------HRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred HHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHh--------------------hhHHHHHcCCceEEEecccc
Confidence 56677788999877 899999987642 222222222 22344556667777777654
No 362
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.77 E-value=8.1e-08 Score=90.05 Aligned_cols=115 Identities=15% Similarity=0.131 Sum_probs=78.2
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccccc----chhh---
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----DIRD--- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i----~~r~--- 122 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++...+ .+++
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 95 (220)
T cd03265 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLY 95 (220)
T ss_pred eeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHH
Confidence 44566667788899999999999999999999987777666655442210 1111111100 0011
Q ss_pred -------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 123 -------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
..++.++++.+++... .-.....||+|+++++.++.++..+++++|+|.|-
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt 159 (220)
T cd03265 96 IHARLYGVPGAERRERIDELLDFVGLLEA--ADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159 (220)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHH--hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1134566788887542 11223468999999999999999999999999993
No 363
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.77 E-value=3.9e-08 Score=91.12 Aligned_cols=116 Identities=17% Similarity=0.237 Sum_probs=79.2
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC-----------ccccccccccccc----hhhh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD-----------PAVMTLPFAANID----IRDT 123 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d-----------~~v~~~~~~t~i~----~r~~ 123 (426)
...++....++.+++|+|++||||||||++|.|......+.+...+.| .++...|.+..+. +.++
T Consensus 19 L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeEN 98 (237)
T COG0410 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEEN 98 (237)
T ss_pred EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHH
Confidence 667778888999999999999999999999999998888888777666 1344455554331 0110
Q ss_pred H--------------H-HHHHHHHcC-CCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCc
Q 014354 124 I--------------R-YKEVMKQFN-LGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (426)
Q Consensus 124 ~--------------~-~~~~~~~~~-l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi 176 (426)
. . .+++.+.|- +.+..... ...+|+|.+|.+.+++++...++++++|.|..
T Consensus 99 L~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~--aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~ 165 (237)
T COG0410 99 LLLGAYARRDKEAQERDLEEVYELFPRLKERRNQR--AGTLSGGEQQMLAIARALMSRPKLLLLDEPSE 165 (237)
T ss_pred HhhhhhcccccccccccHHHHHHHChhHHHHhcCc--ccCCChHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 0 0 222222111 00000000 11379999999999999999999999999954
No 364
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=4.7e-08 Score=102.90 Aligned_cols=130 Identities=20% Similarity=0.209 Sum_probs=81.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccccccccc-ccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA-NIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t-~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
.....++|+.+...|||||...|+.+.--.+. ...+.- -.|.|+--. ..||.-..
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~------------rlagkirfld~redeq------------~rgitmks 62 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISS------------RLAGKIRFLDTREDEQ------------TRGITMKS 62 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEech------------hhccceeeccccchhh------------hhceeeec
Confidence 35678999999999999999999987532211 111100 001111100 02333221
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
+.+| -+.+++-+.|||+|||.+|... +. .++.++|.++++||+-+|...++. ..++
T Consensus 63 s~is-----------~~~~~~~~nlidspghvdf~se------vs--sas~l~d~alvlvdvvegv~~qt~-----~vlr 118 (887)
T KOG0467|consen 63 SAIS-----------LLHKDYLINLIDSPGHVDFSSE------VS--SASRLSDGALVLVDVVEGVCSQTY-----AVLR 118 (887)
T ss_pred cccc-----------cccCceEEEEecCCCccchhhh------hh--hhhhhcCCcEEEEeeccccchhHH-----HHHH
Confidence 1111 1247789999999999998321 11 123568999999999999998873 3444
Q ss_pred HHhhccCCeEEEEecCCCC
Q 014354 226 ILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~ 244 (426)
.....+...++|+||||+.
T Consensus 119 q~~~~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 119 QAWIEGLKPILVINKIDRL 137 (887)
T ss_pred HHHHccCceEEEEehhhhH
Confidence 4445577889999999943
No 365
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.77 E-value=2e-08 Score=102.36 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=81.3
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc----------
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI---------- 118 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i---------- 118 (426)
..+.+....++.+++|+|++||||||||+.|+|...+..+.+.+.+.+.. +...++...+
T Consensus 19 L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v 98 (402)
T PRK09536 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVV 98 (402)
T ss_pred EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHH
Confidence 45566677888999999999999999999999988777776666553311 1111111110
Q ss_pred -----------c---hhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 119 -----------D---IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 119 -----------~---~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
. ..+..++.++++.+++..... .....||+|+++++.+++++..+++++|+|.|=
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~--~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPt 167 (402)
T PRK09536 99 EMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD--RPVTSLSGGERQRVLLARALAQATPVLLLDEPT 167 (402)
T ss_pred HhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 0 012224567788888864322 223468999999999999999999999999993
No 366
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.77 E-value=3.8e-08 Score=91.78 Aligned_cols=115 Identities=14% Similarity=0.148 Sum_probs=78.0
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-----ccccccc---------cc---ccch-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-----AVMTLPF---------AA---NIDI- 120 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-----~v~~~~~---------~t---~i~~- 120 (426)
..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+.+. .+...++ .+ ++..
T Consensus 15 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~ 94 (213)
T cd03235 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMG 94 (213)
T ss_pred eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhc
Confidence 4556666778889999999999999999999999877766665543221 0111110 01 1100
Q ss_pred -------------hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 121 -------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 121 -------------r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.....+.++++.+++.... -.....||+|+++++.+++++..+++++|+|.|-
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 160 (213)
T cd03235 95 LYGHKGLFRRLSKADKAKVDEALERVGLSELA--DRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF 160 (213)
T ss_pred cccccccccCCCHHHHHHHHHHHHHcCCHHHH--hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 0112345677788775321 1223468999999999999999999999999993
No 367
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.77 E-value=6.3e-09 Score=101.54 Aligned_cols=210 Identities=15% Similarity=0.195 Sum_probs=118.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHH-----HH-HHHcCCCCCCCcc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYK-----EV-MKQFNLGPNGGIL 142 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~-----~~-~~~~~l~~ng~i~ 142 (426)
..+|+++|...+||||||..|++.....++-.+-..+ .|+.+.++ .+ -..+|++..|.++
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkL--------------FRHKHEiESGRTSSVGNDILGFD~~GNvV 198 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKL--------------FRHKHEIESGRTSSVGNDILGFDVHGNVV 198 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHH--------------hhhhhhcccCccccccccceeeccccccc
Confidence 4589999999999999999998876554321100000 01110000 00 0134444445555
Q ss_pred cccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH
Q 014354 143 TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY 222 (426)
Q Consensus 143 ~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~ 222 (426)
..-..-...++| +.+++. .-.-+.|||.+|++.+......+ ...+.+|..+++|-+..++-..+ ..
T Consensus 199 NKPD~Hg~~LdW-vkIce~--saKviTFIDLAGHEkYLKTTvFG------MTGH~PDf~MLMiGaNaGIiGmT-----KE 264 (641)
T KOG0463|consen 199 NKPDPHGHNLDW-VKICED--SAKVITFIDLAGHEKYLKTTVFG------MTGHMPDFTMLMIGANAGIIGMT-----KE 264 (641)
T ss_pred cCCCCCCCcccc-eeeccc--cceeEEEEeccchhhhhheeeec------cccCCCCceEEEecccccceecc-----HH
Confidence 432222334444 222221 11246799999998763211111 13466899999999887765544 23
Q ss_pred HHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHh---hhh--cCCceEEeeccc
Q 014354 223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALD---EFY--KNLKSVGVSSVS 297 (426)
Q Consensus 223 ~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~--~~~~vv~vSA~~ 297 (426)
.+.+....++|+++|++|||+.....+.+.++.+..|+..-.+.+ ..-+.+++-.+.. .|. ...|+|.||-.+
T Consensus 265 HLgLALaL~VPVfvVVTKIDMCPANiLqEtmKll~rllkS~gcrK--~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVt 342 (641)
T KOG0463|consen 265 HLGLALALHVPVFVVVTKIDMCPANILQETMKLLTRLLKSPGCRK--LPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVT 342 (641)
T ss_pred hhhhhhhhcCcEEEEEEeeccCcHHHHHHHHHHHHHHhcCCCccc--CcEEEecccceEEeeccCccccccceEEecccc
Confidence 455666789999999999999998766666665554443211110 1112222221111 111 125899999999
Q ss_pred CCCHHHHHHHH
Q 014354 298 GAGIEAYFKAV 308 (426)
Q Consensus 298 g~gv~~l~~~l 308 (426)
|+++.-|...|
T Consensus 343 G~NL~LLkmFL 353 (641)
T KOG0463|consen 343 GTNLPLLKMFL 353 (641)
T ss_pred CCChHHHHHHH
Confidence 99998765544
No 368
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.77 E-value=7.7e-08 Score=90.17 Aligned_cols=114 Identities=16% Similarity=0.119 Sum_probs=78.3
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------cccccccccc----ch
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFAANI----DI 120 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~t~i----~~ 120 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++...+ .+
T Consensus 21 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 100 (221)
T TIGR02211 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTA 100 (221)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcH
Confidence 44555667788899999999999999999999998777776665443210 1111111100 01
Q ss_pred hh----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 121 RD----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 121 r~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
++ ...+.++++.+++..... .....||+|+++++.+++++..+++++|+|.|
T Consensus 101 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LS~G~~qrv~laral~~~p~illlDEP 168 (221)
T TIGR02211 101 LENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN--HRPSELSGGERQRVAIARALVNQPSLVLADEP 168 (221)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh--CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 11 112345678888764321 22346999999999999999999999999999
No 369
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=6.9e-08 Score=98.44 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=81.4
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------------ccccccccccc----ch
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------------AVMTLPFAANI----DI 120 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------------~v~~~~~~t~i----~~ 120 (426)
..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+.+. .+...++...+ .+
T Consensus 44 L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv 123 (400)
T PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTV 123 (400)
T ss_pred EEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCH
Confidence 5666777788999999999999999999999999888877776654331 11111111110 01
Q ss_pred hh----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 121 RD----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 121 r~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.+ ..++.++++.+++..... .....||+|+++++.+++++..+++++|+|.|-
T Consensus 124 ~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~--~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPt 192 (400)
T PRK10070 124 LDNTAFGMELAGINAEERREKALDALRQVGLENYAH--SYPDELSGGMRQRVGLARALAINPDILLMDEAF 192 (400)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh--cCcccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 11 113456788888864322 223468999999999999999999999999993
No 370
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.77 E-value=6.7e-08 Score=96.72 Aligned_cols=115 Identities=14% Similarity=0.111 Sum_probs=81.8
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccccc----chh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAANI----DIR 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~i----~~r 121 (426)
..+.+....++.+++|+|++|||||||++.|.+...+..+.+.+.+.+.. +...++..++ .+.
T Consensus 21 L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~ 100 (343)
T TIGR02314 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVF 100 (343)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHH
Confidence 55666677788999999999999999999999998888887777654321 1111111111 011
Q ss_pred h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+ ..++.++++.+++..... ...+.||+|+++++.+++++..+++++|+|.|=
T Consensus 101 eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~--~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPt 168 (343)
T TIGR02314 101 GNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD--SYPSNLSGGQKQRVAIARALASNPKVLLCDEAT 168 (343)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh--CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 1 112456788888865322 223469999999999999999999999999993
No 371
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=7.2e-08 Score=92.67 Aligned_cols=115 Identities=12% Similarity=0.071 Sum_probs=78.6
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----ccccccc-------c---ccch--h
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----VMTLPFA-------A---NIDI--R 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----v~~~~~~-------t---~i~~--r 121 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++. + ++.. +
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~ 96 (255)
T PRK11248 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQ 96 (255)
T ss_pred EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHH
Confidence 44556667788999999999999999999999998777777665432210 1111111 1 1110 0
Q ss_pred --------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 122 --------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 122 --------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
...++.++++.+++.... -.....||+|+++++.+++++..+++++|+|.|-
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt 156 (255)
T PRK11248 97 LAGVEKMQRLEIAHQMLKKVGLEGAE--KRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF 156 (255)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhHh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 012345678888875421 1223468999999999999999999999999994
No 372
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.76 E-value=7e-08 Score=90.24 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=78.9
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------cccccccccc----ch
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFAANI----DI 120 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~t~i----~~ 120 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++...+ .+
T Consensus 20 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 99 (218)
T cd03255 20 LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTA 99 (218)
T ss_pred EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcH
Confidence 44556667788899999999999999999999998777777665443210 1111111100 00
Q ss_pred hh----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 121 RD----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 121 r~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
++ ...+.++++.+++.+... .....||+|+++++.+++++..+++++|+|.|-
T Consensus 100 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (218)
T cd03255 100 LENVELPLLLAGVPKKERRERAEELLERVGLGDRLN--HYPSELSGGQQQRVAIARALANDPKIILADEPT 168 (218)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh--cChhhcCHHHHHHHHHHHHHccCCCEEEEcCCc
Confidence 11 113456788888764321 223458999999999999999999999999994
No 373
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.76 E-value=1.9e-07 Score=93.43 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=82.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..++.+++|+|++||||||++.+|.......+.++.++..|+.-. +. ... ....-+.+++. +..
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~----gA----veQ--Lk~yae~lgvp----v~~-- 266 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS----GA----VEQ--FQGYADKLDVE----LIV-- 266 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc----cH----HHH--HHHHhhcCCCC----EEe--
Confidence 346789999999999999999999987766778898888875311 10 000 00011111110 111
Q ss_pred ccccccHHHHHHHHHHHh--cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354 146 NLFTTKFDEVISLIERRA--DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~--~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~ 223 (426)
...-..+...+.... .+++++||||||.... ....-..+........++.+++|+++.. ...+. ..+
T Consensus 267 ---~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~--d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~----~~i 335 (407)
T PRK12726 267 ---ATSPAELEEAVQYMTYVNCVDHILIDTVGRNYL--AEESVSEISAYTDVVHPDLTCFTFSSGM--KSADV----MTI 335 (407)
T ss_pred ---cCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcc--CHHHHHHHHHHhhccCCceEEEECCCcc--cHHHH----HHH
Confidence 111112222222222 4689999999998542 1112222333333344677788887632 22221 111
Q ss_pred HHHHhhccCCeEEEEecCCCCCh
Q 014354 224 CSILYKTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 224 ~~~l~~~~~P~IlVlNKiDl~~~ 246 (426)
..... .--+.-+|++|.|-...
T Consensus 336 ~~~f~-~l~i~glI~TKLDET~~ 357 (407)
T PRK12726 336 LPKLA-EIPIDGFIITKMDETTR 357 (407)
T ss_pred HHhcC-cCCCCEEEEEcccCCCC
Confidence 11111 12245788999997654
No 374
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=7.8e-08 Score=94.06 Aligned_cols=117 Identities=15% Similarity=0.074 Sum_probs=80.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc------------ccccccccc---c--chh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------------VMTLPFAAN---I--DIR 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~------------v~~~~~~t~---i--~~r 121 (426)
..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.. +...++... + .++
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~ 102 (287)
T PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIE 102 (287)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHH
Confidence 45566667788999999999999999999999998777777666543311 111122110 0 011
Q ss_pred hh----------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 122 DT----------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 122 ~~----------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+. .++.++++.+++.+..-.-.....||+|+++++.+++++..+++++|+|.|-
T Consensus 103 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt 172 (287)
T PRK13637 103 KDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPT 172 (287)
T ss_pred HHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 11 1245678888886211112223469999999999999999999999999993
No 375
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.76 E-value=7.7e-08 Score=89.87 Aligned_cols=115 Identities=13% Similarity=0.143 Sum_probs=78.8
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccccc----chh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAANI----DIR 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~i----~~r 121 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++...+ .+.
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 98 (216)
T TIGR00960 19 LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVY 98 (216)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHH
Confidence 44555666788899999999999999999999998777777666443210 1111111110 011
Q ss_pred h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+ ..++.++++.+++..... .....+|+|+++++.+++++..+++++|+|.|-
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgG~~qrv~laral~~~p~llllDEPt 166 (216)
T TIGR00960 99 DNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH--ALPMQLSGGEQQRVAIARAIVHKPPLLLADEPT 166 (216)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1 113455678888754321 222468999999999999999999999999994
No 376
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.76 E-value=7.9e-09 Score=93.20 Aligned_cols=118 Identities=17% Similarity=0.202 Sum_probs=91.3
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEec-cC-----------ccccccccccccc----h--
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN-LD-----------PAVMTLPFAANID----I-- 120 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~-~d-----------~~v~~~~~~t~i~----~-- 120 (426)
.+..+.....+..=+||||+|||||||+..|+|...+..+.+++.+ .| .++..+-+++.+- +
T Consensus 21 ln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~e 100 (249)
T COG4674 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRE 100 (249)
T ss_pred eeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHH
Confidence 6777777778888899999999999999999999999988888877 33 1233332332221 1
Q ss_pred ----------------------hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC--Cc
Q 014354 121 ----------------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP--GQ 176 (426)
Q Consensus 121 ----------------------r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP--Gi 176 (426)
..+-++++++...++.+....... ++|.|.+|++++..-+..+++++++|.| |.
T Consensus 101 NLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~--~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGM 178 (249)
T COG4674 101 NLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA--LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178 (249)
T ss_pred HHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh--hhccchhhhhhhheeeccCCcEEEecCccCCC
Confidence 122367889999999988776654 6899999999999989999999999999 66
Q ss_pred cc
Q 014354 177 IE 178 (426)
Q Consensus 177 ~e 178 (426)
-+
T Consensus 179 Td 180 (249)
T COG4674 179 TD 180 (249)
T ss_pred cH
Confidence 44
No 377
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.76 E-value=7.7e-08 Score=89.64 Aligned_cols=114 Identities=15% Similarity=0.135 Sum_probs=77.6
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------cccccccccc----chhh----
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFAANI----DIRD---- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~t~i----~~r~---- 122 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++...+ .+++
T Consensus 16 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 95 (213)
T cd03301 16 LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAF 95 (213)
T ss_pred eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHH
Confidence 44556666788899999999999999999999998777776665443210 1111111100 0111
Q ss_pred ------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 123 ------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 123 ------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
...+.++++.+++... .-.....+|+|+++++.+++++..+++++|+|.|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qr~~laral~~~p~llllDEP 157 (213)
T cd03301 96 GLKLRKVPKDEIDERVREVAELLQIEHL--LDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157 (213)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCHHH--HhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1123456778877532 1222346899999999999999999999999999
No 378
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.75 E-value=3.1e-08 Score=99.14 Aligned_cols=115 Identities=12% Similarity=0.163 Sum_probs=81.6
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccccc----chhh---
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----DIRD--- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i----~~r~--- 122 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.++. +...|+...+ ...+
T Consensus 57 l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~ 136 (340)
T PRK13536 57 VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLL 136 (340)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHH
Confidence 56677777889999999999999999999999998888888777665421 1111111111 0111
Q ss_pred -------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 123 -------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
...+.++++.+++..... .....||+|+++++.++.++..+++++|+|.|-
T Consensus 137 ~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~--~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt 200 (340)
T PRK13536 137 VFGRYFGMSTREIEAVIPSLLEFARLESKAD--ARVSDLSGGMKRRLTLARALINDPQLLILDEPT 200 (340)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhC--CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 112345677788764222 122358999999999999999999999999993
No 379
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=9.6e-08 Score=90.38 Aligned_cols=115 Identities=14% Similarity=0.096 Sum_probs=79.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------------ccccccccccc----ch
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------------AVMTLPFAANI----DI 120 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------------~v~~~~~~t~i----~~ 120 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+...++...+ .+
T Consensus 25 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 104 (233)
T PRK11629 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTA 104 (233)
T ss_pred EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCH
Confidence 4455566778889999999999999999999999877777766654321 11111211110 11
Q ss_pred hh----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 121 RD----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 121 r~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
++ ..++.++++.+++..... .....||+|+++++.+++++..+++++|+|.|-
T Consensus 105 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt 173 (233)
T PRK11629 105 LENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRAN--HRPSELSGGERQRVAIARALVNNPRLVLADEPT 173 (233)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 11 113456788888754221 223458999999999999999999999999993
No 380
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=1.1e-07 Score=81.25 Aligned_cols=119 Identities=17% Similarity=0.150 Sum_probs=72.5
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl 243 (426)
++..+.+||.-|+-... .-..-++ +..+.++||||+.+.+.-..-.......+..-.-.+...++++||.|.
T Consensus 60 KNLk~~vwdLggqtSir------PyWRcYy--~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~ 131 (182)
T KOG0072|consen 60 KNLKFQVWDLGGQTSIR------PYWRCYY--ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDY 131 (182)
T ss_pred ccccceeeEccCccccc------HHHHHHh--cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccc
Confidence 55788999999985541 1111122 345899999999876543221111111111111234556788999998
Q ss_pred CChHhHHHHHHHHH--HHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 244 AQHEFALEWMQDFE--VFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 244 ~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
.......+....+. .|.. .-..+|..||.+|+|++...+||.+.+.+
T Consensus 132 ~~~~t~~E~~~~L~l~~Lk~------------------------r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 132 SGALTRSEVLKMLGLQKLKD------------------------RIWQIVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred hhhhhHHHHHHHhChHHHhh------------------------heeEEEeeccccccCCcHHHHHHHHHHhc
Confidence 77654433333222 1111 12569999999999999999999987764
No 381
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.75 E-value=7.4e-08 Score=97.06 Aligned_cols=119 Identities=15% Similarity=0.151 Sum_probs=82.7
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------ccccccc-------c-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFA-------A- 116 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~-------t- 116 (426)
..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+.+.. +...++. +
T Consensus 9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV 88 (363)
T TIGR01186 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTI 88 (363)
T ss_pred EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCH
Confidence 44556667788999999999999999999999999888888877664321 1111111 1
Q ss_pred --ccch--h--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC-Ccccc
Q 014354 117 --NIDI--R--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEI 179 (426)
Q Consensus 117 --~i~~--r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e~ 179 (426)
++.. + ...++.++++.+++..... .....||+|+++++.+++++..+++++|+|.| +-.++
T Consensus 89 ~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~--~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~ 162 (363)
T TIGR01186 89 LQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEH--RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDP 162 (363)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 1110 0 0123456788888854222 22345899999999999999999999999999 33444
No 382
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.74 E-value=1.3e-07 Score=89.86 Aligned_cols=114 Identities=11% Similarity=0.129 Sum_probs=77.3
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------ccccccccc----cchh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAAN----IDIR 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~----i~~r 121 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++... ..++
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (241)
T cd03256 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVL 96 (241)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHH
Confidence 45556667788899999999999999999999988777776665443211 111111110 0011
Q ss_pred h------------------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 122 D------------------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 122 ~------------------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
+ ...+.++++.+++.... -.....||+|+++++.+++++..+++++|+|.|
T Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 171 (241)
T cd03256 97 ENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA--YQRADQLSGGQQQRVAIARALMQQPKLILADEP 171 (241)
T ss_pred HHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh--CCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 1 11234567777775321 122345899999999999999999999999999
No 383
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.74 E-value=2e-08 Score=95.01 Aligned_cols=172 Identities=17% Similarity=0.131 Sum_probs=102.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..+.+.+++.|.+|+|||+|||.+++...... +....++.| .++-+.
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~----------t~k~K~g~T----------------------q~in~f- 179 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIAD----------TSKSKNGKT----------------------QAINHF- 179 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhh----------hcCCCCccc----------------------eeeeee-
Confidence 44567899999999999999999998864321 111122222 112111
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccch----hchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW----SASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNM 220 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~----~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~ 220 (426)
.-+-.|.++|.||.....+. ...+.....++.. ...-.+.++||+.-++.+.+
T Consensus 180 -----------------~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D----- 237 (320)
T KOG2486|consen 180 -----------------HVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTD----- 237 (320)
T ss_pred -----------------eccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCC-----
Confidence 22358999999995433111 1122333333322 22346778899999998877
Q ss_pred HHHHHHHhhccCCeEEEEecCCCCChHh--HHHHHHHHHH-HHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeeccc
Q 014354 221 LYACSILYKTRLPLVLAFNKTDVAQHEF--ALEWMQDFEV-FQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS 297 (426)
Q Consensus 221 l~~~~~l~~~~~P~IlVlNKiDl~~~~~--~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~ 297 (426)
..++..+.+.++|+.+|+||||....-. ..+-...++. |+.. .+. -|....|-+.+|+.+
T Consensus 238 ~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l-----------~~~------~f~~~~Pw~~~Ssvt 300 (320)
T KOG2486|consen 238 NPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL-----------IRG------VFLVDLPWIYVSSVT 300 (320)
T ss_pred hHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhc-----------ccc------ceeccCCceeeeccc
Confidence 4456667889999999999999876532 1111111110 1110 111 112234567899999
Q ss_pred CCCHHHHHHHHH
Q 014354 298 GAGIEAYFKAVE 309 (426)
Q Consensus 298 g~gv~~l~~~l~ 309 (426)
+-|++.|+-.+.
T Consensus 301 ~~Grd~Ll~~i~ 312 (320)
T KOG2486|consen 301 SLGRDLLLLHIA 312 (320)
T ss_pred ccCceeeeeehh
Confidence 999998865544
No 384
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.74 E-value=9.4e-08 Score=89.51 Aligned_cols=114 Identities=16% Similarity=0.151 Sum_probs=77.8
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccccc----chhh---
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----DIRD--- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i----~~r~--- 122 (426)
..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+.+.. +...++...+ .+++
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~ 97 (220)
T cd03263 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLR 97 (220)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHH
Confidence 44556666788899999999999999999999998777776665443210 1111111100 0111
Q ss_pred -------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 123 -------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
..++.++++.+++... .-.....||+|+++++.+++++..+++++|+|.|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 160 (220)
T cd03263 98 FYARLKGLPKSEIKEEVELLLRVLGLTDK--ANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160 (220)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHH--HhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 1124566778887532 1222346899999999999999999999999999
No 385
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.74 E-value=9e-08 Score=92.11 Aligned_cols=115 Identities=12% Similarity=0.038 Sum_probs=78.5
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-----cccccccc-------c---ccch--h
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-----AVMTLPFA-------A---NIDI--R 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-----~v~~~~~~-------t---~i~~--r 121 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+...++. + ++.. .
T Consensus 28 l~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 107 (257)
T PRK11247 28 LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLK 107 (257)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhccc
Confidence 4556666778889999999999999999999999877766665422110 01111111 1 1110 0
Q ss_pred --hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 122 --DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 122 --~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
...++.++++.+++.... -.....||+|+++++.+++++..+++++|+|.|-
T Consensus 108 ~~~~~~~~~~l~~~gl~~~~--~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt 161 (257)
T PRK11247 108 GQWRDAALQALAAVGLADRA--NEWPAALSGGQKQRVALARALIHRPGLLLLDEPL 161 (257)
T ss_pred chHHHHHHHHHHHcCChhHh--cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 112345678888876421 1223468999999999999999999999999993
No 386
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.74 E-value=6.8e-08 Score=91.31 Aligned_cols=115 Identities=14% Similarity=0.094 Sum_probs=79.2
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccccc----chh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAANI----DIR 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~i----~~r 121 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++...+ .+.
T Consensus 21 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 100 (233)
T cd03258 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVF 100 (233)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHH
Confidence 44556667788899999999999999999999998887777766544311 1111111100 011
Q ss_pred h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+ ...+.++++.+++... .-.....+|+|+++++.+++++..+++++|+|.|-
T Consensus 101 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (233)
T cd03258 101 ENVALPLEIAGVPKAEIEERVLELLELVGLEDK--ADAYPAQLSGGQKQRVGIARALANNPKVLLCDEAT 168 (233)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh--hhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 1 1123456778877542 12233468999999999999999999999999993
No 387
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.74 E-value=1.3e-07 Score=90.53 Aligned_cols=106 Identities=18% Similarity=0.148 Sum_probs=71.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccc----cchhhh------------HHHHHH
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN----IDIRDT------------IRYKEV 129 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~----i~~r~~------------~~~~~~ 129 (426)
..++.+++|+|++|||||||++.|+|...+..+.+.+.+.. +...++... ..+.+. ....++
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~--i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 99 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDT--VSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEI 99 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCce--EEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHH
Confidence 34678999999999999999999999987776666543321 111111110 001111 123556
Q ss_pred HHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 130 MKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 130 ~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
++.+++... .-.....||+|+++++.++.++..+++++|+|.|=
T Consensus 100 l~~l~l~~~--~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt 143 (246)
T cd03237 100 AKPLQIEQI--LDREVPELSGGELQRVAIAACLSKDADIYLLDEPS 143 (246)
T ss_pred HHHcCCHHH--hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 777776532 11223458999999999999999999999999993
No 388
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.74 E-value=7.3e-07 Score=89.64 Aligned_cols=157 Identities=23% Similarity=0.261 Sum_probs=92.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
.+++.+|.++|--||||||..-.|.......++++.++..|.. .| ++ .-.++.+-++.+..-.+- -..
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~---Rp-AA------~eQL~~La~q~~v~~f~~-~~~- 164 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTY---RP-AA------IEQLKQLAEQVGVPFFGS-GTE- 164 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccC---Ch-HH------HHHHHHHHHHcCCceecC-CCC-
Confidence 5577899999999999999999999998888999999877731 11 10 011122233333221110 000
Q ss_pred ccccccHH-HHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 146 NLFTTKFD-EVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 146 ~~ls~~~~-~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
.+-.+ -...+..+....++++||||+|-... ...+-..+.+......+|-+++|+|+.-|-+..... -
T Consensus 165 ---~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~i--de~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A------~ 233 (451)
T COG0541 165 ---KDPVEIAKAALEKAKEEGYDVVIVDTAGRLHI--DEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTA------K 233 (451)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccc--cHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHH------H
Confidence 00000 01123334466789999999997553 233333444444556799999999998776543211 1
Q ss_pred HHHhhccCCe-EEEEecCCCCChH
Q 014354 225 SILYKTRLPL-VLAFNKTDVAQHE 247 (426)
Q Consensus 225 ~~l~~~~~P~-IlVlNKiDl~~~~ 247 (426)
.+-. .+|+ =+|++|.|-....
T Consensus 234 aF~e--~l~itGvIlTKlDGdaRG 255 (451)
T COG0541 234 AFNE--ALGITGVILTKLDGDARG 255 (451)
T ss_pred HHhh--hcCCceEEEEcccCCCcc
Confidence 1111 2232 4789999977653
No 389
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.74 E-value=7.9e-08 Score=85.73 Aligned_cols=132 Identities=14% Similarity=0.144 Sum_probs=93.1
Q ss_pred hhhhHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccccccc
Q 014354 35 DKEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPF 114 (426)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~ 114 (426)
..+.++|.++++...+ ...+++..+.+-+|.|||.+||||||||++|--...+..+.+.+-+-...+-.-..
T Consensus 6 ~l~v~dlHK~~G~~eV--------LKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~ 77 (256)
T COG4598 6 ALEVEDLHKRYGEHEV--------LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKD 77 (256)
T ss_pred ceehhHHHhhcccchh--------hcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCC
Confidence 3457889999999888 77788888899999999999999999999998888787776665433211000000
Q ss_pred ccc--cc------hhh------------------------------------hHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 115 AAN--ID------IRD------------------------------------TIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 115 ~t~--i~------~r~------------------------------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+.. .+ +|. .-+.+..+.++|+......... .+|+
T Consensus 78 G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~--~LSG 155 (256)
T COG4598 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPA--HLSG 155 (256)
T ss_pred CCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCcc--ccCc
Confidence 000 00 000 0022345667777765553332 5899
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCc
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQ 176 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi 176 (426)
|+++++.+++++.-.+++.++|.|-.
T Consensus 156 GQQQR~aIARaLameP~vmLFDEPTS 181 (256)
T COG4598 156 GQQQRVAIARALAMEPEVMLFDEPTS 181 (256)
T ss_pred hHHHHHHHHHHHhcCCceEeecCCcc
Confidence 99999999999999999999999964
No 390
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.73 E-value=1.3e-07 Score=89.64 Aligned_cols=115 Identities=13% Similarity=0.138 Sum_probs=78.4
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc---------ccccccccccc----chhh---
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP---------AVMTLPFAANI----DIRD--- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~---------~v~~~~~~t~i----~~r~--- 122 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+...++...+ .+.+
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~ 96 (236)
T TIGR03864 17 LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLR 96 (236)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHH
Confidence 4455566678889999999999999999999999877777776644321 11111211111 0011
Q ss_pred -------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 123 -------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
...+.++++.+++.... -.....+|+|+++++.+++++..+++++|+|.|-
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 160 (236)
T TIGR03864 97 YHAALHGLSRAEARERIAALLARLGLAERA--DDKVRELNGGHRRRVEIARALLHRPALLLLDEPT 160 (236)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCChhhh--cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 11234567778775421 1223458999999999999999999999999993
No 391
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.73 E-value=6.8e-08 Score=102.40 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=82.8
Q ss_pred CCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc---------ccccccccccc---chhhhHH
Q 014354 58 AGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP---------AVMTLPFAANI---DIRDTIR 125 (426)
Q Consensus 58 ~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~---------~v~~~~~~t~i---~~r~~~~ 125 (426)
...+.+...+++.+|+|+|++|||||||++.|+|...+..+.+.+.+.+. .+...|+.+.+ .+++.+.
T Consensus 350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~ 429 (529)
T TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLR 429 (529)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHh
Confidence 36677777889999999999999999999999999999888887766442 23333444321 1333332
Q ss_pred ----------HHHHHHHcCCCCC-----CCccc----ccccccccHHHHHHHHHHHhcCCCEEEEcCCCc
Q 014354 126 ----------YKEVMKQFNLGPN-----GGILT----SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (426)
Q Consensus 126 ----------~~~~~~~~~l~~n-----g~i~~----~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi 176 (426)
+.++++..++... .|.-+ .-.-||+|++|++.+|+++.++++++++|.|--
T Consensus 430 ~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TS 499 (529)
T TIGR02868 430 LGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTE 499 (529)
T ss_pred ccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 2334554443210 11111 113489999999999999999999999999953
No 392
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.73 E-value=1.6e-07 Score=88.58 Aligned_cols=172 Identities=15% Similarity=0.169 Sum_probs=85.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+++|+.||||||..+.+.+...+.. ...+..|..+.. . .+..
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-----------T~~L~~T~~ve~-~-----------------~v~~------- 44 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-----------TLRLEPTIDVEK-S-----------------HVRF------- 44 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-----------GGG-----SEEE-E-----------------EEEC-------
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-----------ccccCCcCCceE-E-----------------EEec-------
Confidence 589999999999999999998764421 111111111110 0 0000
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-- 228 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-- 228 (426)
.....+.+||.||+..+.... ........+ ..+.++|||+|+.... ...-+......+..+.
T Consensus 45 ------------~~~~~l~iwD~pGq~~~~~~~-~~~~~~~if--~~v~~LIyV~D~qs~~-~~~~l~~~~~~i~~l~~~ 108 (232)
T PF04670_consen 45 ------------LSFLPLNIWDCPGQDDFMENY-FNSQREEIF--SNVGVLIYVFDAQSDD-YDEDLAYLSDCIEALRQY 108 (232)
T ss_dssp ------------TTSCEEEEEEE-SSCSTTHTT-HTCCHHHHH--CTESEEEEEEETT-ST-CHHHHHHHHHHHHHHHHH
T ss_pred ------------CCCcEEEEEEcCCcccccccc-ccccHHHHH--hccCEEEEEEEccccc-HHHHHHHHHHHHHHHHHh
Confidence 234688999999998764221 001111222 3468999999997321 2111111112222222
Q ss_pred hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhh-cCCceEEeecccCCCHHHHHHH
Q 014354 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
..+..+.+.++|+|+..........+...... ...+.... ....++.+|... ..+.+-+-.
T Consensus 109 sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i-----------------~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~ 170 (232)
T PF04670_consen 109 SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRI-----------------RDELEDLGIEDITFFLTSIWD-ESLYEAWSK 170 (232)
T ss_dssp STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHH-----------------HHHHHHTT-TSEEEEEE-TTS-THHHHHHHH
T ss_pred CCCCeEEEEEeecccCCHHHHHHHHHHHHHHH-----------------HHHhhhccccceEEEeccCcC-cHHHHHHHH
Confidence 34667888999999998876555544443211 11111111 125577777655 556666555
Q ss_pred HHHHH
Q 014354 308 VEESA 312 (426)
Q Consensus 308 l~~~~ 312 (426)
+...+
T Consensus 171 Ivq~L 175 (232)
T PF04670_consen 171 IVQKL 175 (232)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 55443
No 393
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.72 E-value=1.5e-07 Score=88.55 Aligned_cols=115 Identities=16% Similarity=0.065 Sum_probs=79.4
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----cccccccc---ccchh-------h-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----VMTLPFAA---NIDIR-------D- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----v~~~~~~t---~i~~r-------~- 122 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. ....+..+ ++... .
T Consensus 38 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~ 117 (224)
T cd03220 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRK 117 (224)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHH
Confidence 55666777788999999999999999999999998777777766543311 11111111 11100 0
Q ss_pred --hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 123 --TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 123 --~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
...+.++++.+++.+.. -.....||+|+++++.+++++..+++++|+|.|=
T Consensus 118 ~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrv~laral~~~p~llllDEP~ 170 (224)
T cd03220 118 EIDEKIDEIIEFSELGDFI--DLPVKTYSSGMKARLAFAIATALEPDILLIDEVL 170 (224)
T ss_pred HHHHHHHHHHHHcCChhhh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 01234566677765422 2233568999999999999999999999999993
No 394
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=1e-07 Score=95.51 Aligned_cols=115 Identities=16% Similarity=0.132 Sum_probs=80.3
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccccc----chh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAANI----DIR 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~i----~~r 121 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++...+ .++
T Consensus 21 l~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~ 100 (343)
T PRK11153 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVF 100 (343)
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHH
Confidence 44556667788999999999999999999999998888777776554321 1111111110 011
Q ss_pred h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+ ..++.++++.+++.... -.....||+|+++++.+++++..+++++|+|.|-
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~--~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPt 168 (343)
T PRK11153 101 DNVALPLELAGTPKAEIKARVTELLELVGLSDKA--DRYPAQLSGGQKQRVAIARALASNPKVLLCDEAT 168 (343)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh--hCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 1 11345577888876432 1223458999999999999999999999999993
No 395
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=9.6e-08 Score=96.16 Aligned_cols=114 Identities=13% Similarity=0.082 Sum_probs=80.2
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------ccccccc-------c---ccc-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFA-------A---NID- 119 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~-------t---~i~- 119 (426)
..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+.. +...++. + ++.
T Consensus 20 l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~ 99 (356)
T PRK11650 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAY 99 (356)
T ss_pred EeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHh
Confidence 44556667788899999999999999999999998888777766543210 1111111 1 111
Q ss_pred -hh--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 120 -IR--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 120 -~r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
.+ ...++.++++.+++.....- ....||+|++|++.+++++..+++++|+|.|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~--~~~~LSgGq~QRvalARAL~~~P~llLLDEP 161 (356)
T PRK11650 100 GLKIRGMPKAEIEERVAEAARILELEPLLDR--KPRELSGGQRQRVAMGRAIVREPAVFLFDEP 161 (356)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHcCChhHhhC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 11 01234567888888653322 2246899999999999999999999999999
No 396
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.72 E-value=6.2e-08 Score=90.53 Aligned_cols=110 Identities=11% Similarity=0.055 Sum_probs=80.3
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchh-----------------
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIR----------------- 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r----------------- 121 (426)
..+.+-...++...+|+|++||||||||+.+++...+..+.+.+.+...+-... +.++|
T Consensus 47 L~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~----~~elrk~IG~vS~~L~~~~~~~ 122 (257)
T COG1119 47 LGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGET----IFELRKRIGLVSSELHERFRVR 122 (257)
T ss_pred ccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcc----hHHHHHHhCccCHHHHhhcccc
Confidence 566666677888999999999999999999999998887777776654322111 01111
Q ss_pred -------------------------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 122 -------------------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 122 -------------------------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
+.-++..+++.+++..-.... ...+|.|.++++-+++|+.++++++|+|.|
T Consensus 123 ~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~--~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP 198 (257)
T COG1119 123 ETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRP--FGSLSQGEQRRVLIARALVKDPELLILDEP 198 (257)
T ss_pred cccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCc--hhhcCHhHHHHHHHHHHHhcCCCEEEecCc
Confidence 111334567777766543322 225899999999999999999999999999
No 397
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.72 E-value=9.6e-08 Score=86.71 Aligned_cols=79 Identities=18% Similarity=0.178 Sum_probs=62.2
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (426)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~ 144 (426)
...++.+++|+|++|||||||++.|+|...+..+.+.+.+... ...++.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i--~~~~q~----------------------------- 69 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP--VYKPQY----------------------------- 69 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEE--EEEccc-----------------------------
Confidence 4467789999999999999999999999888777766543221 111110
Q ss_pred cccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
..+|+++++++.+++++..+++++++|.|=
T Consensus 70 -~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 70 -IDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 017999999999999999999999999993
No 398
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.71 E-value=6.1e-08 Score=89.71 Aligned_cols=115 Identities=16% Similarity=0.090 Sum_probs=80.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------ccccccccc----cchh----
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAAN----IDIR---- 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~----i~~r---- 121 (426)
..+.+....++.+++|+|++|+|||||++.|.|...+..+.+.+.+.+.. +..+++... ..++
T Consensus 16 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 95 (201)
T cd03231 16 FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLR 95 (201)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHH
Confidence 44556667788999999999999999999999998777777766543321 111111110 0111
Q ss_pred ------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 122 ------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 122 ------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
...++.++++.+++.... -.....||+|+++++.+++++..+++++|+|.|-
T Consensus 96 ~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 153 (201)
T cd03231 96 FWHADHSDEQVEEALARVGLNGFE--DRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT 153 (201)
T ss_pred hhcccccHHHHHHHHHHcCChhhh--cCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 122345678888876421 1223458999999999999999999999999994
No 399
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.71 E-value=8.5e-08 Score=101.02 Aligned_cols=128 Identities=13% Similarity=0.171 Sum_probs=70.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccccc-ccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTL-PFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~-~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
..+|+|+|.+|+|||||+|.|++..... +... +.++.+. .+..
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~------------vss~~~~TTr~~--------------------ei~~---- 161 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFS------------TDAFGMGTTSVQ--------------------EIEG---- 161 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcccccc------------ccCCCCCceEEE--------------------EEEE----
Confidence 4589999999999999999999986432 1111 2232100 0000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHH----HHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI----ITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~----l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~ 223 (426)
...+..+.||||||+.+.......... +...+....+|++|||+..........-......+
T Consensus 162 --------------~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~I 227 (763)
T TIGR00993 162 --------------LVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTI 227 (763)
T ss_pred --------------EECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHH
Confidence 013468999999999875321111222 22233334578999988654322211111111111
Q ss_pred HHHHh-hccCCeEEEEecCCCCCh
Q 014354 224 CSILY-KTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 224 ~~~l~-~~~~P~IlVlNKiDl~~~ 246 (426)
...+. ..-.-+|||++..|...+
T Consensus 228 q~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 228 TDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHhCHHhHcCEEEEEeCCccCCC
Confidence 11111 233457999999999974
No 400
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.71 E-value=1.8e-07 Score=88.52 Aligned_cols=115 Identities=14% Similarity=0.096 Sum_probs=78.6
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----------cccccccccc----chhh-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------VMTLPFAANI----DIRD- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----------v~~~~~~t~i----~~r~- 122 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++...+ .+++
T Consensus 16 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~ 95 (236)
T cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLEN 95 (236)
T ss_pred ecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHH
Confidence 45556667788899999999999999999999987777676665443210 1111111100 0010
Q ss_pred -------------------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 123 -------------------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 123 -------------------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
...+.++++.+++... .-.....+|+|+++++.+++++..+++++|+|.|=
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 171 (236)
T cd03219 96 VMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL--ADRPAGELSYGQQRRLEIARALATDPKLLLLDEPA 171 (236)
T ss_pred HHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccch--hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1134566778887542 12233468999999999999999999999999993
No 401
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=1.6e-07 Score=87.39 Aligned_cols=113 Identities=17% Similarity=0.137 Sum_probs=76.4
Q ss_pred CCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------cccccccc----------ccch--
Q 014354 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFAA----------NIDI-- 120 (426)
Q Consensus 61 ~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~t----------~i~~-- 120 (426)
+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++.. ++..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 445556688899999999999999999999998777776655442210 11111111 1110
Q ss_pred h--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 121 R--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 121 r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
. ....+.++++.+++..... .....||+|+++++.+++++..+++++|+|.|-
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~ 156 (211)
T cd03298 96 SPGLKLTAEDRQAIEVALARVGLAGLEK--RLPGELSGGERQRVALARVLVRDKPVLLLDEPF 156 (211)
T ss_pred ccccCccHHHHHHHHHHHHHcCCHHHHh--CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 0 1113456788888754211 122358999999999999999999999999993
No 402
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.71 E-value=1.4e-07 Score=87.66 Aligned_cols=115 Identities=18% Similarity=0.121 Sum_probs=77.9
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------cccccccccc--c---chhh-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAAN--I---DIRD- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~--i---~~r~- 122 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+...++... + .+.+
T Consensus 17 l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~ 96 (211)
T cd03225 17 LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEE 96 (211)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHH
Confidence 4455666678889999999999999999999999877777666544321 0111111110 0 0111
Q ss_pred ---------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 123 ---------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 123 ---------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
...+.++++.+++... .-.....||+|+++++.+++++..+++++|+|.|-
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 162 (211)
T cd03225 97 VAFGLENLGLPEEEIEERVEEALELVGLEGL--RDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPT 162 (211)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCcHhh--hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1123456777887532 11223468999999999999999999999999993
No 403
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=1.4e-07 Score=89.56 Aligned_cols=114 Identities=16% Similarity=0.109 Sum_probs=76.9
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------cccccccc-------c---ccch
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------AVMTLPFA-------A---NIDI 120 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------~v~~~~~~-------t---~i~~ 120 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+...++. + ++..
T Consensus 18 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 97 (239)
T cd03296 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAF 97 (239)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhh
Confidence 4455666678889999999999999999999999877766665544221 01111111 1 1110
Q ss_pred ----h------h----hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 121 ----R------D----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 121 ----r------~----~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
+ . ...+.++++.+++..... .....+|+|+++++.+++++..+++++|+|.|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LS~G~~qrl~la~al~~~p~llllDEP 163 (239)
T cd03296 98 GLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD--RYPAQLSGGQRQRVALARALAVEPKVLLLDEP 163 (239)
T ss_pred hhhhccccccCCHHHHHHHHHHHHHHcCChhhhh--cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 0 0 112345677888753211 22235899999999999999999999999999
No 404
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.70 E-value=2.1e-07 Score=85.18 Aligned_cols=115 Identities=13% Similarity=0.109 Sum_probs=78.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc------------ccccccccc---c--chh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------------VMTLPFAAN---I--DIR 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~------------v~~~~~~t~---i--~~r 121 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++... . .++
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 87 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVD 87 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHH
Confidence 44556667788899999999999999999999988777776665443210 111121110 0 001
Q ss_pred h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+ ...+.++++.+++.... -.....||+|+++++.+++++..+++++|+|.|-
T Consensus 88 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 155 (190)
T TIGR01166 88 QDVAFGPLNLGLSEAEVERRVREALTAVGASGLR--ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1 11234567777775421 1223468999999999999999999999999994
No 405
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.70 E-value=1.3e-07 Score=95.79 Aligned_cols=115 Identities=12% Similarity=0.113 Sum_probs=79.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------ccccccc-------c---ccch
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFA-------A---NIDI 120 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~-------t---~i~~ 120 (426)
..+.+....++.+++|+|++||||||||+.|+|...+..+.+.+.+.+.. +...++. + ++..
T Consensus 19 l~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~ 98 (369)
T PRK11000 19 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSF 98 (369)
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHh
Confidence 44556666788899999999999999999999998877777665443210 1111111 1 1110
Q ss_pred --h------h--hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 121 --R------D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 121 --r------~--~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+ . ..++.++++.+++..... .....||+|+++++.+++++..+++++|+|.|-
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~--~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt 161 (369)
T PRK11000 99 GLKLAGAKKEEINQRVNQVAEVLQLAHLLD--RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (369)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHcCChhhhc--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0 0 123456788888764222 223468999999999999999999999999993
No 406
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.70 E-value=1.4e-07 Score=94.90 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=80.5
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------ccc-------ccccc---ccc-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMT-------LPFAA---NID- 119 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~-------~~~~t---~i~- 119 (426)
..+.+.....+.+++|+|++|+||||||+.|.|...+..+.+.+.+.+.. +.. +|..+ |+.
T Consensus 20 l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~ 99 (353)
T TIGR03265 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAY 99 (353)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHH
Confidence 34455566678899999999999999999999998888777766543210 110 11111 111
Q ss_pred -hh--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 120 -IR--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 120 -~r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.+ ...++.++++.+++.+... .....||+|+++++.+++++..+++++|+|.|=
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~--~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~ 162 (353)
T TIGR03265 100 GLKNRGMGRAEVAERVAELLDLVGLPGSER--KYPGQLSGGQQQRVALARALATSPGLLLLDEPL 162 (353)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCCchhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 11 0224567888888875322 223468999999999999999999999999993
No 407
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=1.7e-07 Score=89.23 Aligned_cols=116 Identities=16% Similarity=0.130 Sum_probs=78.4
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc----chhh--
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI----DIRD-- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i----~~r~-- 122 (426)
..+.+....++.+++|+|++|+|||||++.|.|...+..+.+.+.+.+. .+...++...+ .+.+
T Consensus 17 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 96 (242)
T cd03295 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENI 96 (242)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHH
Confidence 4455666778889999999999999999999999877777666544321 01111111100 0111
Q ss_pred --------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 123 --------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 123 --------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
...+.++++.+++.+..-.-.....||+|+++++.+++++..+++++|+|.|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 162 (242)
T cd03295 97 ALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEP 162 (242)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 1134566888887640011122345899999999999999999999999999
No 408
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=1.9e-07 Score=87.07 Aligned_cols=111 Identities=13% Similarity=0.094 Sum_probs=75.7
Q ss_pred CCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------cccccccccc----chhh
Q 014354 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFAANI----DIRD 122 (426)
Q Consensus 61 ~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~t~i----~~r~ 122 (426)
+.+....+ .+++|+|++|+|||||++.|+|...+..+.+.+.+.+.. +...++...+ .+.+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE 94 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence 45555667 899999999999999999999998777776665443210 1111111110 0111
Q ss_pred --------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 123 --------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 123 --------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
..++.++++.+++.... -.....+|+|+++++.+++++..+++++|+|.|
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 158 (214)
T cd03297 95 NLAFGLKRKRNREDRISVDELLDLLGLDHLL--NRYPAQLSGGEKQRVALARALAAQPELLLLDEP 158 (214)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHcCCHhHh--hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 11345577888875421 123346899999999999999999999999999
No 409
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.69 E-value=5.3e-07 Score=87.96 Aligned_cols=157 Identities=17% Similarity=0.176 Sum_probs=91.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..++.+++++|-+|+||||.+..|.......+.++.+...|.-- . ...-.++.+-+++|..- ...
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFR------A----aAiEQL~~w~er~gv~v----I~~- 200 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFR------A----AAIEQLEVWGERLGVPV----ISG- 200 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHH------H----HHHHHHHHHHHHhCCeE----Ecc-
Confidence 45689999999999999999999999999999999998777310 0 11112233344444221 110
Q ss_pred ccccccH-HHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcC------CcEEEEEEeCCCCCCchhhhh
Q 014354 146 NLFTTKF-DEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTF------PTVVTYVVDTPRSANPMTFMS 218 (426)
Q Consensus 146 ~~ls~~~-~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~------~d~vl~VVDa~~~~~~~~~~~ 218 (426)
..-++.- --.-.+-.+..++++++|+||+|-..- ...+...+....+-.. ++-+++|+|+..|-+.....
T Consensus 201 ~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhn--k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA- 277 (340)
T COG0552 201 KEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHN--KKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA- 277 (340)
T ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccC--chhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH-
Confidence 0001100 001223345678899999999996542 3334344433333222 44588888998876653321
Q ss_pred hHHHHHHHHhhccCCeEEEEecCCCCCh
Q 014354 219 NMLYACSILYKTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 219 ~~l~~~~~l~~~~~P~IlVlNKiDl~~~ 246 (426)
+.....--=.=+|++|+|-...
T Consensus 278 ------k~F~eav~l~GiIlTKlDgtAK 299 (340)
T COG0552 278 ------KIFNEAVGLDGIILTKLDGTAK 299 (340)
T ss_pred ------HHHHHhcCCceEEEEecccCCC
Confidence 1111111123588999995544
No 410
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.69 E-value=6.5e-08 Score=95.24 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=81.5
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccccc----chhh---
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----DIRD--- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i----~~r~--- 122 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...+....+ .+.+
T Consensus 18 l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~ 97 (301)
T TIGR03522 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQ 97 (301)
T ss_pred EEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHH
Confidence 45556667788999999999999999999999998888887776554321 1212221111 0111
Q ss_pred -------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 123 -------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
..++.++++.+++.+... .....+|+|+++++.++.++..+++++|+|.|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--~~~~~LS~G~~qrv~la~al~~~p~lliLDEP 160 (301)
T TIGR03522 98 FIAGIYGMKGQLLKQRVEEMIELVGLRPEQH--KKIGQLSKGYRQRVGLAQALIHDPKVLILDEP 160 (301)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCchHhc--CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 123456788888875322 22346899999999999999999999999999
No 411
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.69 E-value=8.9e-08 Score=86.84 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=71.0
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCC
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN 138 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~n 138 (426)
..+.+....++.+++|+|++|+||||||+.+++ ..+.+.+.+..+..... .+..... .++++.+++...
T Consensus 11 l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~----~~~~~~q---~~~l~~~~L~~~ 79 (176)
T cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRN----KLIFIDQ---LQFLIDVGLGYL 79 (176)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccc----cEEEEhH---HHHHHHcCCCcc
Confidence 556667778899999999999999999999874 23334433221111100 0110111 457788887642
Q ss_pred CCcccccccccccHHHHHHHHHHHhcC--CCEEEEcCCC
Q 014354 139 GGILTSLNLFTTKFDEVISLIERRADH--LDYVLVDTPG 175 (426)
Q Consensus 139 g~i~~~~~~ls~~~~~~~~~~~~~~~~--~~~~liDTPG 175 (426)
..-.....+|+++++++.+++++..+ ++++|+|.|-
T Consensus 80 -~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt 117 (176)
T cd03238 80 -TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPS 117 (176)
T ss_pred -ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCc
Confidence 11222345899999999999999999 9999999994
No 412
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.69 E-value=9.4e-08 Score=90.26 Aligned_cols=114 Identities=17% Similarity=0.220 Sum_probs=77.9
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-----------ccccccccccc----chhh-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-----------AVMTLPFAANI----DIRD- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-----------~v~~~~~~t~i----~~r~- 122 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+...++...+ .+++
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 95 (232)
T cd03218 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEEN 95 (232)
T ss_pred eccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHH
Confidence 4555666778889999999999999999999999877777666543321 01111111110 0111
Q ss_pred ---------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 123 ---------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 123 ---------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
..++.++++.+++.... -.....||+|+++++.+++++..+++++|+|.|
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 160 (232)
T cd03218 96 ILAVLEIRGLSKKEREEKLEELLEEFHITHLR--KSKASSLSGGERRRVEIARALATNPKFLLLDEP 160 (232)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 11234567777775421 222346899999999999999999999999999
No 413
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=1.2e-06 Score=85.77 Aligned_cols=160 Identities=19% Similarity=0.197 Sum_probs=86.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceE------EEeccC--ccccccccccc-cchhhhHHHHHHHHHcCCCCC
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG------YVMNLD--PAVMTLPFAAN-IDIRDTIRYKEVMKQFNLGPN 138 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~------~i~~~d--~~v~~~~~~t~-i~~r~~~~~~~~~~~~~l~~n 138 (426)
.-+.|.++|.=..||||+++.|+...++..+.+ +.+... +.-..+|+++. ++-..
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~---------------- 120 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKK---------------- 120 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCC----------------
Confidence 346799999999999999999999987743211 000000 11222333321 11000
Q ss_pred CCcccccccccccHHHHHHHHHHHhcC---CCEEEEcCCCcccccchh-chH---HHHHHHHHhcCCcEEEEEEeCCCCC
Q 014354 139 GGILTSLNLFTTKFDEVISLIERRADH---LDYVLVDTPGQIEIFTWS-ASG---AIITEAFASTFPTVVTYVVDTPRSA 211 (426)
Q Consensus 139 g~i~~~~~~ls~~~~~~~~~~~~~~~~---~~~~liDTPGi~e~~~~~-~~~---~~l~~~~~~~~~d~vl~VVDa~~~~ 211 (426)
.+..++.|...+..+..-++ ... -.+.||||||+.+....+ ..+ ..+.+.|+ ..+|.|+++.|+.. +
T Consensus 121 --pF~gL~~FG~aflnRf~csq--mp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFa-eR~D~IiLlfD~hK-L 194 (532)
T KOG1954|consen 121 --PFRGLNKFGNAFLNRFMCSQ--LPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFA-ERVDRIILLFDAHK-L 194 (532)
T ss_pred --chhhhhhhHHHHHHHHHHhc--CChhhhhheeeeccCcccccchhcccccCChHHHHHHHH-HhccEEEEEechhh-c
Confidence 01112223333322221111 000 267899999998753211 111 12222232 45899999999854 3
Q ss_pred CchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHH
Q 014354 212 NPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEW 252 (426)
Q Consensus 212 ~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~ 252 (426)
+..+.. ..++..++-.+-.+-||+||.|.++.+.+.++
T Consensus 195 DIsdEf---~~vi~aLkG~EdkiRVVLNKADqVdtqqLmRV 232 (532)
T KOG1954|consen 195 DISDEF---KRVIDALKGHEDKIRVVLNKADQVDTQQLMRV 232 (532)
T ss_pred cccHHH---HHHHHHhhCCcceeEEEeccccccCHHHHHHH
Confidence 333322 22345556566667899999999998865444
No 414
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.69 E-value=7.2e-08 Score=95.02 Aligned_cols=114 Identities=13% Similarity=0.165 Sum_probs=78.6
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccccc----chhhh--
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----DIRDT-- 123 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i----~~r~~-- 123 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++...+ .+++.
T Consensus 20 l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 99 (303)
T TIGR01288 20 VNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLL 99 (303)
T ss_pred EcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHH
Confidence 55666777888999999999999999999999988777777766543210 1111111110 01111
Q ss_pred --------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 124 --------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 124 --------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
..+.++++.+++.... -.....||+|+++++.+++++..+++++|+|.|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~--~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 162 (303)
T TIGR01288 100 VFGRYFGMSTREIEAVIPSLLEFARLESKA--DVRVALLSGGMKRRLTLARALINDPQLLILDEP 162 (303)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCChhHh--cCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1234567777775421 122345899999999999999999999999999
No 415
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.68 E-value=8e-08 Score=89.58 Aligned_cols=115 Identities=14% Similarity=0.130 Sum_probs=78.2
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccccc----chh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAANI----DIR 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~i----~~r 121 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++...+ .+.
T Consensus 18 l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 97 (214)
T TIGR02673 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVY 97 (214)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHH
Confidence 45556667788899999999999999999999998777777665443211 1111111100 011
Q ss_pred h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+ ...+.++++.+++.... -.....||+|+++++.+++++..+++++|+|.|-
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt 165 (214)
T TIGR02673 98 ENVALPLEVRGKKEREIQRRVGAALRQVGLEHKA--DAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPT 165 (214)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh--hCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 1 11234567777775421 1223468999999999999999999999999993
No 416
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.68 E-value=3.5e-07 Score=88.80 Aligned_cols=106 Identities=18% Similarity=0.254 Sum_probs=66.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+...++|+|.||+|||||+|+|+..... ..++|++| ++||-+.+..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-------------~~NfPF~T------------------IdPn~a~V~v--- 64 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-------------AANFPFCT------------------IDPNEARVEV--- 64 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-------------ccCCCcce------------------eccccceeec---
Confidence 4468999999999999999999998743 56788887 3333332211
Q ss_pred ccccHHHHHHHHHHH-hcCCCEEEEcCCCcccccc-hhchHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354 148 FTTKFDEVISLIERR-ADHLDYVLVDTPGQIEIFT-WSASGAIITEAFASTFPTVVTYVVDTPR 209 (426)
Q Consensus 148 ls~~~~~~~~~~~~~-~~~~~~~liDTPGi~e~~~-~~~~~~~l~~~~~~~~~d~vl~VVDa~~ 209 (426)
-..-+++...+.... .-...+.++|.+|...... -..+|......++ .+|.++.||+++.
T Consensus 65 ~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR--~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 65 PDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIR--HVDAIFHVVRAFE 126 (391)
T ss_pred CchHHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCchHHHHHhhh--hccceeEEEEecC
Confidence 122233333332210 1124678999999987532 2235554444443 3688999998764
No 417
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.68 E-value=2.6e-07 Score=87.39 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=75.2
Q ss_pred CCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----ccccccc-------c---ccchh------
Q 014354 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----VMTLPFA-------A---NIDIR------ 121 (426)
Q Consensus 63 ~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----v~~~~~~-------t---~i~~r------ 121 (426)
+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.. ....++. + ++...
T Consensus 5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~ 84 (230)
T TIGR01184 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLP 84 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhccc
Confidence 3445677899999999999999999999998877777766443210 0111111 1 11010
Q ss_pred ------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 122 ------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 122 ------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
....+.++++.+++... .-.....+|+|+++++.+++++..+++++|+|.|=
T Consensus 85 ~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 142 (230)
T TIGR01184 85 DLSKSERRAIVEEHIALVGLTEA--ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPF 142 (230)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHH--HcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 01124556777777532 12233468999999999999999999999999993
No 418
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.67 E-value=3.3e-07 Score=95.20 Aligned_cols=150 Identities=19% Similarity=0.218 Sum_probs=78.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccC--CceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR--NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~--~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~ 144 (426)
.++.+|+|+|++|+||||++.+|....... +.++.++..|+.-. +. . +.+..++- ..++...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi----gA----~------EQLk~ya~--iLgv~v~ 411 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV----GG----R------EQLHSYGR--QLGIAVH 411 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc----cH----H------HHHHHhhc--ccCceeE
Confidence 456799999999999999999999864333 35677776664211 00 0 11111110 0111110
Q ss_pred cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
....-..+...+.. ..+++++||||||..... ......+. .+........++||++..+..... .++
T Consensus 412 ---~a~d~~~L~~aL~~-l~~~DLVLIDTaG~s~~D--~~l~eeL~-~L~aa~~~a~lLVLpAtss~~Dl~------eii 478 (559)
T PRK12727 412 ---EADSAESLLDLLER-LRDYKLVLIDTAGMGQRD--RALAAQLN-WLRAARQVTSLLVLPANAHFSDLD------EVV 478 (559)
T ss_pred ---ecCcHHHHHHHHHH-hccCCEEEecCCCcchhh--HHHHHHHH-HHHHhhcCCcEEEEECCCChhHHH------HHH
Confidence 01111122222222 356899999999985431 11111121 222222345677888765432211 112
Q ss_pred HHHhhccCCeEEEEecCCCCCh
Q 014354 225 SILYKTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~~~ 246 (426)
..+.. ..+.-+|+||+|....
T Consensus 479 ~~f~~-~~~~gvILTKlDEt~~ 499 (559)
T PRK12727 479 RRFAH-AKPQGVVLTKLDETGR 499 (559)
T ss_pred HHHHh-hCCeEEEEecCcCccc
Confidence 22222 2577899999997543
No 419
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.67 E-value=2.2e-07 Score=87.47 Aligned_cols=115 Identities=15% Similarity=0.107 Sum_probs=77.3
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------------ccccccccccc----ch
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------------AVMTLPFAANI----DI 120 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------------~v~~~~~~t~i----~~ 120 (426)
..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+. .+...++...+ .+
T Consensus 26 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv 105 (228)
T PRK10584 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNA 105 (228)
T ss_pred EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCH
Confidence 4455566678899999999999999999999999877766665543221 01111111100 00
Q ss_pred hh----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 121 RD----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 121 r~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.+ ..++.++++.+++.... -.....+|+|+++++.+++++..+++++|+|.|-
T Consensus 106 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt 174 (228)
T PRK10584 106 LENVELPALLRGESSRQSRNGAKALLEQLGLGKRL--DHLPAQLSGGEQQRVALARAFNGRPDVLFADEPT 174 (228)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 11 12345567788775321 1223458999999999999999999999999993
No 420
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.67 E-value=1.9e-07 Score=86.69 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=78.3
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------cccccccccc----chhh----
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFAANI----DIRD---- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~t~i----~~r~---- 122 (426)
..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.. +...++...+ .+++
T Consensus 16 l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 95 (208)
T cd03268 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRL 95 (208)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHH
Confidence 44555666788899999999999999999999988777776665443210 1111111100 0111
Q ss_pred --------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 123 --------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 123 --------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
..++.++++.+++.... -.....+|+|+++++.++.++..+++++|+|.|-
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 154 (208)
T cd03268 96 LARLLGIRKKRIDEVLDVVGLKDSA--KKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT 154 (208)
T ss_pred HHHhcCCcHHHHHHHHHHcCCHHHH--hhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 12345667888775421 1223458999999999999999999999999994
No 421
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.67 E-value=1.5e-07 Score=94.77 Aligned_cols=114 Identities=15% Similarity=0.109 Sum_probs=79.4
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------ccccccc-------c---ccc-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFA-------A---NID- 119 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~-------t---~i~- 119 (426)
..+.+....++.+++|+|++||||||||+.|+|...+..+.+.+.+.+.. +...++. + ++.
T Consensus 18 l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~ 97 (353)
T PRK10851 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAF 97 (353)
T ss_pred EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHh
Confidence 44555666788899999999999999999999998887777766543310 1111111 1 111
Q ss_pred -hh------------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 120 -IR------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 120 -~r------------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
.+ ...++.++++.+++..... .....||+|+++++.+++++..+++++|+|.|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~--~~~~~LSgGq~QRvalArAL~~~P~llLLDEP 163 (353)
T PRK10851 98 GLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD--RYPAQLSGGQKQRVALARALAVEPQILLLDEP 163 (353)
T ss_pred hhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 00 0123456788888864322 12246899999999999999999999999999
No 422
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.67 E-value=2.8e-07 Score=92.67 Aligned_cols=156 Identities=13% Similarity=0.117 Sum_probs=80.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccC-C-ceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-N-IRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT 143 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~-~-~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~ 143 (426)
..++.+++|+|++||||||++.+|....... + .++.++..|..- .+. .+ .+...-+.+++... .+.
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R----~ga----~E--qL~~~a~~~gv~~~--~~~ 201 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR----IGG----HE--QLRIFGKILGVPVH--AVK 201 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc----ccH----HH--HHHHHHHHcCCceE--ecC
Confidence 4566799999999999999999999875433 3 467776655321 010 11 11111222332110 011
Q ss_pred ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (426)
Q Consensus 144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~ 223 (426)
+ ...+.. +.....+.+++||||||..... ......+........+.-.++|+++..+....... ...
T Consensus 202 ~----~~~l~~----~l~~l~~~DlVLIDTaG~~~~d--~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev---i~~ 268 (374)
T PRK14722 202 D----GGDLQL----ALAELRNKHMVLIDTIGMSQRD--RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV---VQA 268 (374)
T ss_pred C----cccHHH----HHHHhcCCCEEEEcCCCCCccc--HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH---HHH
Confidence 0 111111 1122456899999999976431 11222222221223356678999998766543311 111
Q ss_pred HHHHhh---cc--CCeEEEEecCCCCCh
Q 014354 224 CSILYK---TR--LPLVLAFNKTDVAQH 246 (426)
Q Consensus 224 ~~~l~~---~~--~P~IlVlNKiDl~~~ 246 (426)
...... .. -+.=+|++|.|-...
T Consensus 269 f~~~~~~p~~~~~~~~~~I~TKlDEt~~ 296 (374)
T PRK14722 269 YRSAAGQPKAALPDLAGCILTKLDEASN 296 (374)
T ss_pred HHHhhcccccccCCCCEEEEeccccCCC
Confidence 111100 00 134688999997664
No 423
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=2.1e-07 Score=90.65 Aligned_cols=114 Identities=14% Similarity=0.077 Sum_probs=80.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccc--cc---chhhh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAA--NI---DIRDT 123 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t--~i---~~r~~ 123 (426)
....+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.. +...++.. .+ .+.+.
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~en 102 (279)
T PRK13635 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDD 102 (279)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHH
Confidence 44555667788899999999999999999999998888777776554321 11111111 00 01111
Q ss_pred ----------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 124 ----------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 124 ----------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
.++.+++..+++.+. +-.....||+|+++++.+++++..+++++|+|.|
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 167 (279)
T PRK13635 103 VAFGLENIGVPREEMVERVDQALRQVGMEDF--LNREPHRLSGGQKQRVAIAGVLALQPDIIILDEA 167 (279)
T ss_pred HhhhHhhCCCCHHHHHHHHHHHHHHcCChhh--hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 124566778887643 2233346999999999999999999999999999
No 424
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.67 E-value=2.1e-07 Score=93.87 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=80.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCC--ceEEEeccCcc--------cc-------cccccc---cc
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN--IRGYVMNLDPA--------VM-------TLPFAA---NI 118 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~--~~~~i~~~d~~--------v~-------~~~~~t---~i 118 (426)
..+.+.....+.+++|+|++|+||||||+.|.|...+.. +.+.+.+.+.. +. -+|..+ ++
T Consensus 21 l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl 100 (362)
T TIGR03258 21 LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNV 100 (362)
T ss_pred EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHH
Confidence 455566667888999999999999999999999988877 77666443310 00 011111 11
Q ss_pred c--hh--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 119 D--IR--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 119 ~--~r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
. .+ ...++.++++.+++..... .....||+|+++++.+++++..+++++|+|.|
T Consensus 101 ~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~--~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP 164 (362)
T TIGR03258 101 AFGLRAQKMPKADIAERVADALKLVGLGDAAA--HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEP 164 (362)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCCchhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 1 11 0123566788888875432 22346999999999999999999999999999
No 425
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=2.4e-07 Score=90.13 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=79.3
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccc-----ccchhhh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAA-----NIDIRDT 123 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t-----~i~~r~~ 123 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++.. ...+.+.
T Consensus 20 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~ 99 (277)
T PRK13652 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQD 99 (277)
T ss_pred eeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHH
Confidence 44556667788999999999999999999999998888777766543211 11111110 0000111
Q ss_pred ----------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 124 ----------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 124 ----------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
..+.++++.+++.+. .-.....+|+|+++++.+++++..+++++|+|.|
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEP 164 (277)
T PRK13652 100 IAFGPINLGLDEETVAHRVSSALHMLGLEEL--RDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEP 164 (277)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHCCChhH--hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 124566788887643 2223346999999999999999999999999999
No 426
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.66 E-value=2.1e-07 Score=87.03 Aligned_cols=114 Identities=16% Similarity=0.175 Sum_probs=77.6
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------ccccccccc----cchhh---
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAAN----IDIRD--- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~----i~~r~--- 122 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++... ..+.+
T Consensus 21 l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 100 (218)
T cd03266 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLE 100 (218)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHH
Confidence 44555666788899999999999999999999998777777666443211 111111110 00111
Q ss_pred -------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 123 -------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
...+.++++.+++... .-.....+|+|+++++.+++++..+++++++|.|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~laral~~~p~illlDEP 163 (218)
T cd03266 101 YFAGLYGLKGDELTARLEELADRLGMEEL--LDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEP 163 (218)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHH--HhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1134557788887532 1123345899999999999999999999999999
No 427
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=2.1e-07 Score=93.46 Aligned_cols=115 Identities=15% Similarity=0.206 Sum_probs=79.6
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------ccc-------ccccc---ccc-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMT-------LPFAA---NID- 119 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~-------~~~~t---~i~- 119 (426)
..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+.. +.. +|..+ |+.
T Consensus 22 l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~ 101 (351)
T PRK11432 22 IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGY 101 (351)
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHH
Confidence 44556667788899999999999999999999998888777766543210 011 11111 111
Q ss_pred -hh------h--hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 120 -IR------D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 120 -~r------~--~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.+ . ..++.++++.+++.....- ....+|+|+++++.+++++..+++++|+|.|=
T Consensus 102 ~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r--~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~ 164 (351)
T PRK11432 102 GLKMLGVPKEERKQRVKEALELVDLAGFEDR--YVDQISGGQQQRVALARALILKPKVLLFDEPL 164 (351)
T ss_pred HHhHcCCCHHHHHHHHHHHHHHcCCchhhcC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 11 0 1234567788887643221 22468999999999999999999999999993
No 428
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.66 E-value=9.4e-08 Score=88.97 Aligned_cols=113 Identities=19% Similarity=0.229 Sum_probs=75.7
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccccc----chhh---
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----DIRD--- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i----~~r~--- 122 (426)
..+.+....++ +++|+|++|+|||||++.|.|...+..+.+.+.+.+.. +...++...+ .+.+
T Consensus 16 l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 94 (211)
T cd03264 16 LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLD 94 (211)
T ss_pred EcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHH
Confidence 34455555567 99999999999999999999988777777665443211 1111111100 0111
Q ss_pred -------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 123 -------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
...+.++++.+++... .-.....+|+|+++++.+++++..+++++|+|.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 157 (211)
T cd03264 95 YIAWLKGIPSKEVKARVDEVLELVNLGDR--AKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157 (211)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHCCCHHH--HhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1123456777777532 1123345899999999999999999999999999
No 429
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.66 E-value=9e-08 Score=88.73 Aligned_cols=114 Identities=14% Similarity=0.093 Sum_probs=79.5
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------ccccccc-------c---ccc
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFA-------A---NID 119 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~-------t---~i~ 119 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++. + ++.
T Consensus 17 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~ 96 (204)
T PRK13538 17 FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLR 96 (204)
T ss_pred EecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHH
Confidence 45666677788999999999999999999999998887777766443210 1111111 1 010
Q ss_pred h-------hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 120 I-------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 120 ~-------r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
. .....+.++++.+++.... -.....||+|+++++.+++++..+++++|+|.|
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 156 (204)
T PRK13538 97 FYQRLHGPGDDEALWEALAQVGLAGFE--DVPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156 (204)
T ss_pred HHHHhcCccHHHHHHHHHHHcCCHHHh--hCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 0 1112345678888875321 223346999999999999999999999999999
No 430
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.66 E-value=1.1e-07 Score=88.60 Aligned_cols=115 Identities=15% Similarity=0.144 Sum_probs=78.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc------------ccccccccc----cchhh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------------VMTLPFAAN----IDIRD 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~------------v~~~~~~t~----i~~r~ 122 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++... ..+.+
T Consensus 16 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 95 (213)
T cd03262 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLE 95 (213)
T ss_pred ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHH
Confidence 44556666788899999999999999999999998777777766543210 111111110 00111
Q ss_pred -----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 123 -----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 123 -----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
...+.++++.+++.+. .-.....+|+|+++++.+++++..+++++|+|.|=
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 163 (213)
T cd03262 96 NITLAPIKVKGMSKAEAEERALELLEKVGLADK--ADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPT 163 (213)
T ss_pred HHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhH--hhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0123456777777542 11222458999999999999999999999999993
No 431
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.66 E-value=8.7e-08 Score=89.13 Aligned_cols=115 Identities=15% Similarity=0.127 Sum_probs=77.2
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc------cccccccccc----cchhh------
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP------AVMTLPFAAN----IDIRD------ 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~------~v~~~~~~t~----i~~r~------ 122 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+...++... ..+++
T Consensus 16 l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 95 (210)
T cd03269 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLA 95 (210)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHH
Confidence 3445556678889999999999999999999998777777666544321 0111111110 00011
Q ss_pred ----------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 123 ----------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
...+.++++.+++... .-.....+|+|+++++.++.++..+++++++|.|-
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~ 156 (210)
T cd03269 96 QLKGLKKEEARRRIDEWLERLELSEY--ANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPF 156 (210)
T ss_pred HHcCCChHHHHHHHHHHHHHcCChHH--HhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1124556777777532 11223458999999999999999999999999994
No 432
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.65 E-value=2.4e-07 Score=93.27 Aligned_cols=111 Identities=13% Similarity=0.111 Sum_probs=76.6
Q ss_pred CCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------ccccccccc----cchhhh
Q 014354 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFAAN----IDIRDT 123 (426)
Q Consensus 62 ~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~t~----i~~r~~ 123 (426)
.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++... ..+++.
T Consensus 17 vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~en 96 (352)
T PRK11144 17 VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGN 96 (352)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHH
Confidence 44455677899999999999999999999998777777665442210 111111110 011111
Q ss_pred ----------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 124 ----------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 124 ----------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
.++.++++.+++.+.. -.....||+|+++++.+++++..+++++|+|.|
T Consensus 97 l~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LSgGq~qRvalaraL~~~p~llLLDEP 155 (352)
T PRK11144 97 LRYGMAKSMVAQFDKIVALLGIEPLL--DRYPGSLSGGEKQRVAIGRALLTAPELLLMDEP 155 (352)
T ss_pred HHhhhhhhhHHHHHHHHHHcCCchhh--hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 2345678888886422 122346899999999999999999999999999
No 433
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=1.6e-07 Score=91.27 Aligned_cols=115 Identities=15% Similarity=0.049 Sum_probs=79.3
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccc-----------c
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAA-----------N 117 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t-----------~ 117 (426)
..+.+....++.+++|+|++|+|||||++.|.|...+..+.+.+.+.+.. +...++.. +
T Consensus 21 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~ 100 (274)
T PRK13647 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDD 100 (274)
T ss_pred eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHH
Confidence 45556667788999999999999999999999998777776665443210 11111111 1
Q ss_pred cch--h--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 118 IDI--R--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 118 i~~--r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+.. + ...++.++++.+++.+.. -.....||+|+++++.+++++..+++++|+|.|-
T Consensus 101 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~--~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt 166 (274)
T PRK13647 101 VAFGPVNMGLDKDEVERRVEEALKAVRMWDFR--DKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPM 166 (274)
T ss_pred HHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh--cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 110 0 012345677888875422 2223468999999999999999999999999994
No 434
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.65 E-value=9.3e-08 Score=89.07 Aligned_cols=115 Identities=10% Similarity=0.082 Sum_probs=77.9
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccccc----chh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAANI----DIR 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~i----~~r 121 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++...+ .++
T Consensus 17 l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~ 96 (214)
T cd03292 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVY 96 (214)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHH
Confidence 44555666788899999999999999999999998777776665443211 1111111100 011
Q ss_pred h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+ ...+.++++.+++.... -.....+|+|+++++.+++++..+++++|+|.|-
T Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 164 (214)
T cd03292 97 ENVAFALEVTGVPPREIRKRVPAALELVGLSHKH--RALPAELSGGEQQRVAIARAIVNSPTILIADEPT 164 (214)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh--hCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 1 11234567777775421 1223458999999999999999999999999993
No 435
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.65 E-value=2.4e-07 Score=93.28 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=76.0
Q ss_pred CCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------ccccccccc----cchhhh
Q 014354 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFAAN----IDIRDT 123 (426)
Q Consensus 62 ~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~t~----i~~r~~ 123 (426)
.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++... ..+++.
T Consensus 16 isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~en 95 (354)
T TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGN 95 (354)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHH
Confidence 44455677899999999999999999999998777776665443210 111111110 011111
Q ss_pred --------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 124 --------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 124 --------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
.++.++++.+++..... .....||+|+++++.+++++..+++++|+|.|
T Consensus 96 l~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~--~~~~~LSgGqkqRvalAraL~~~p~lllLDEP 158 (354)
T TIGR02142 96 LRYGMKRARPSERRISFERVIELLGIGHLLG--RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEP 158 (354)
T ss_pred HHHHhhccChhHHHHHHHHHHHHcCChhHhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 12456788888764322 22235899999999999999999999999999
No 436
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.65 E-value=5.8e-08 Score=86.87 Aligned_cols=95 Identities=16% Similarity=0.161 Sum_probs=68.2
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCC
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN 138 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~n 138 (426)
....+....++.+++|+|++|+|||||++.|.|...+..+.+.+.+.+... .+ .++..+ . .
T Consensus 16 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~--~~------~~~~~~-----~------~ 76 (163)
T cd03216 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSF--AS------PRDARR-----A------G 76 (163)
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCc--CC------HHHHHh-----c------C
Confidence 445556677889999999999999999999999988877777665432211 00 000000 0 0
Q ss_pred CCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 139 GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 139 g~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
-+.+. .+|+++++++.+++++..+++++|+|.|-
T Consensus 77 i~~~~---qLS~G~~qrl~laral~~~p~illlDEP~ 110 (163)
T cd03216 77 IAMVY---QLSVGERQMVEIARALARNARLLILDEPT 110 (163)
T ss_pred eEEEE---ecCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 12221 28999999999999999999999999994
No 437
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.65 E-value=2.1e-07 Score=88.11 Aligned_cols=117 Identities=17% Similarity=0.083 Sum_probs=86.3
Q ss_pred CCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccccccccccc------------c--hhhh
Q 014354 58 AGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANI------------D--IRDT 123 (426)
Q Consensus 58 ~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i------------~--~r~~ 123 (426)
+..+.+...+++.+++++|++||||||+|+.|+|...+.++.+.|.+.+|--....|-..+ + +.+.
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds 118 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDS 118 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhh
Confidence 3556777788999999999999999999999999999999999999998853211111111 1 1111
Q ss_pred ----------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCc
Q 014354 124 ----------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (426)
Q Consensus 124 ----------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi 176 (426)
-+.+.+.+.+++.+ -+-..++-+|.|.+-++.++.++...++++|+|.|-+
T Consensus 119 ~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~--~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 119 LEVLKLIYEIPDDEFAERLDFLTEILDLEG--FLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhcchh--hhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 12334455555552 2334456689999999999999999999999999965
No 438
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.65 E-value=1.6e-07 Score=88.46 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=77.9
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------ccccccc------c---ccc
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFA------A---NID 119 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~------t---~i~ 119 (426)
..+.+....++.+++|+|++|+|||||++.|.|...+..+.+.+.+.+.. +...++. + ++.
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~ 102 (225)
T PRK10247 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLI 102 (225)
T ss_pred eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHH
Confidence 45566777788999999999999999999999987777776665443210 1111111 0 111
Q ss_pred h----h----hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 120 I----R----DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 120 ~----r----~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
. + ....+.++++.+++... -.-.....+|+|+++++.+++++..+++++|+|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (225)
T PRK10247 103 FPWQIRNQQPDPAIFLDDLERFALPDT-ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEI 164 (225)
T ss_pred hHHhhcCCChHHHHHHHHHHHcCCChH-HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 0 0 11234567778887421 01122345899999999999999999999999999
No 439
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.64 E-value=3e-07 Score=89.07 Aligned_cols=115 Identities=13% Similarity=0.051 Sum_probs=77.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccccc----chh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAANI----DIR 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~i----~~r 121 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++...+ .+.
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 102 (269)
T PRK11831 23 FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVF 102 (269)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHH
Confidence 44556667788899999999999999999999998776666655432210 1111111100 011
Q ss_pred hh-----------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 122 DT-----------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 122 ~~-----------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+. ..+.++++.+++... .-.....||+|+++++.+++++..+++++|+|.|-
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt 171 (269)
T PRK11831 103 DNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGA--AKLMPSELSGGMARRAALARAIALEPDLIMFDEPF 171 (269)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhh--hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11 123345777777532 12223468999999999999999999999999993
No 440
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.64 E-value=1.1e-07 Score=87.75 Aligned_cols=115 Identities=11% Similarity=0.032 Sum_probs=78.5
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc---------cccccccccc----cchhh---
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP---------AVMTLPFAAN----IDIRD--- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~---------~v~~~~~~t~----i~~r~--- 122 (426)
....+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+. .+...++... ..+.+
T Consensus 16 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 95 (198)
T TIGR01189 16 FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLH 95 (198)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHH
Confidence 4455666778889999999999999999999999877777665544321 0111111110 00111
Q ss_pred ---------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 123 ---------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 123 ---------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
...+.++++.+++.+.. -.....||+|+++++.+++++..+++++++|.|-
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 155 (198)
T TIGR01189 96 FWAAIHGGAQRTIEDALAAVGLTGFE--DLPAAQLSAGQQRRLALARLWLSRAPLWILDEPT 155 (198)
T ss_pred HHHHHcCCcHHHHHHHHHHcCCHHHh--cCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 11245667778776421 1223468999999999999999999999999993
No 441
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.64 E-value=3e-07 Score=86.65 Aligned_cols=117 Identities=11% Similarity=0.072 Sum_probs=72.8
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc---chhh---
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI---DIRD--- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i---~~r~--- 122 (426)
..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.. +...++...+ .+.+
T Consensus 19 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~ 98 (229)
T cd03254 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIR 98 (229)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHh
Confidence 44555666788899999999999999999999998777777666443210 1111111110 0000
Q ss_pred -------hHHHHHHHHHcCCCC---------CCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 123 -------TIRYKEVMKQFNLGP---------NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 123 -------~~~~~~~~~~~~l~~---------ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
...+.+.++.+++.. ..-.......+|+|+++++.+++++..+++++|+|.|=
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~ 167 (229)
T cd03254 99 LGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEAT 167 (229)
T ss_pred ccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 011122222222210 00011123468999999999999999999999999993
No 442
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.64 E-value=3.1e-07 Score=85.04 Aligned_cols=115 Identities=14% Similarity=0.133 Sum_probs=78.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------cccccccccc----ch
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFAANI----DI 120 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~t~i----~~ 120 (426)
..+.+....++.+++|+|++|+|||||++.|.|...+..+.+.+.+.+.. +...++...+ .+
T Consensus 14 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 93 (206)
T TIGR03608 14 LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETV 93 (206)
T ss_pred EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcH
Confidence 44556666788899999999999999999999998777777666543310 1111111100 01
Q ss_pred hh----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 121 RD----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 121 r~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
++ ..++.++++.+++.... -.....+|+|+++++.+++++..+++++|+|.|-
T Consensus 94 ~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~lS~G~~qr~~laral~~~p~llllDEPt 162 (206)
T TIGR03608 94 EENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL--KQKIYELSGGEQQRVALARAILKDPPLILADEPT 162 (206)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh--cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 11 11234567888875321 1223458999999999999999999999999994
No 443
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.64 E-value=2.6e-07 Score=93.64 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=78.8
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------cc-------cccccc---ccc-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VM-------TLPFAA---NID- 119 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~-------~~~~~t---~i~- 119 (426)
..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+.. +. -+|..+ |+.
T Consensus 30 l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~ 109 (375)
T PRK09452 30 ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAF 109 (375)
T ss_pred EeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHH
Confidence 34455666788899999999999999999999998887777665543310 00 011111 111
Q ss_pred -hh------h--hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 120 -IR------D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 120 -~r------~--~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.+ . ..++.++++.+++..... .....||+|+++++.+++++..+++++|+|.|=
T Consensus 110 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~ 172 (375)
T PRK09452 110 GLRMQKTPAAEITPRVMEALRMVQLEEFAQ--RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESL 172 (375)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHcCCchhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 11 0 113456777888764322 222458999999999999999999999999993
No 444
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.64 E-value=3.1e-08 Score=87.88 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~ 95 (426)
+...|+++|.||+|||||+|+|++....
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~ 128 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVC 128 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCce
Confidence 3467889999999999999999987643
No 445
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=1.3e-07 Score=89.89 Aligned_cols=115 Identities=12% Similarity=0.093 Sum_probs=78.3
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------------ccccccccccc----
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------------AVMTLPFAANI---- 118 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------------~v~~~~~~t~i---- 118 (426)
..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+. .+...++...+
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (242)
T PRK11124 18 LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHL 97 (242)
T ss_pred EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCC
Confidence 4455566678889999999999999999999999877777766644321 01111211100
Q ss_pred chhh-----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 119 DIRD-----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 119 ~~r~-----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.+.+ ...+.++++.+++.... -.....||+|+++++.+++++..+++++|+|.|=
T Consensus 98 tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LS~G~~qrv~laral~~~p~llilDEPt 169 (242)
T PRK11124 98 TVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYA--DRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPT 169 (242)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 0111 11234567778775422 2223468999999999999999999999999993
No 446
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=2.8e-07 Score=90.31 Aligned_cols=115 Identities=14% Similarity=0.050 Sum_probs=79.0
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------cccccccc--------
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFAA-------- 116 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~t-------- 116 (426)
..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.. +...++.+
T Consensus 23 L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~t 102 (290)
T PRK13634 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEET 102 (290)
T ss_pred eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhh
Confidence 55566677788999999999999999999999998777776665443210 11111111
Q ss_pred ---ccch--h--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 117 ---NIDI--R--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 117 ---~i~~--r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
++.. + ....+.++++.+++.+.- .-.....||+|+++++.+++++..+++++|+|.|
T Consensus 103 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEP 172 (290)
T PRK13634 103 VEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL-LARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEP 172 (290)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh-hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 1100 0 011345678888875211 1122345899999999999999999999999999
No 447
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=2.6e-07 Score=89.99 Aligned_cols=115 Identities=9% Similarity=0.033 Sum_probs=80.0
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------ccccccc--------c---c
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFA--------A---N 117 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~--------t---~ 117 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++. + +
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en 102 (279)
T PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDD 102 (279)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHH
Confidence 45556667788999999999999999999999998888777766554321 1111111 1 1
Q ss_pred cch--h--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 118 IDI--R--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 118 i~~--r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+.. + ...++.++++.+++..... .....||+|+++++.+++++..+++++|+|.|-
T Consensus 103 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~--~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt 168 (279)
T PRK13650 103 VAFGLENKGIPHEEMKERVNEALELVGMQDFKE--REPARLSGGQKQRVAIAGAVAMRPKIIILDEAT 168 (279)
T ss_pred HHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh--CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 110 0 0123456788888864211 122358999999999999999999999999993
No 448
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.63 E-value=2.8e-07 Score=96.77 Aligned_cols=115 Identities=14% Similarity=0.020 Sum_probs=80.0
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccc------------
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAA------------ 116 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t------------ 116 (426)
..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+.+.. +...++..
T Consensus 19 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 98 (490)
T PRK10938 19 LQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDT 98 (490)
T ss_pred cccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhc
Confidence 55666677788999999999999999999999987777666655332210 11111110
Q ss_pred ccchhh--------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 117 NIDIRD--------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 117 ~i~~r~--------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.....+ ..++.++++.+++.... -.....||+|+++++.++.++..+++++|+|.|-
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 163 (490)
T PRK10938 99 GRTTAEIIQDEVKDPARCEQLAQQFGITALL--DRRFKYLSTGETRKTLLCQALMSEPDLLILDEPF 163 (490)
T ss_pred cccHHHhcccchhHHHHHHHHHHHcCCHhhh--hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 011111 22456778888886432 2233469999999999999999999999999993
No 449
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.63 E-value=2.2e-07 Score=87.97 Aligned_cols=116 Identities=18% Similarity=0.159 Sum_probs=81.7
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----------cccc---c----ccccc--
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------VMTL---P----FAANI-- 118 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----------v~~~---~----~~t~i-- 118 (426)
..+.+....++..++|+|++|||||||++.|.|-..+..+.+.+.+.+.. +... | +.+++
T Consensus 20 l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~ 99 (235)
T COG1122 20 LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVED 99 (235)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHH
Confidence 44556667788899999999999999999999999999888765544311 0000 0 00000
Q ss_pred ---------ch---hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCc
Q 014354 119 ---------DI---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (426)
Q Consensus 119 ---------~~---r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi 176 (426)
.+ .-..++.++++.+++..... .....||+|.++++.+|.++..+++++++|.|.-
T Consensus 100 evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~--r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta 167 (235)
T COG1122 100 EVAFGLENLGLPREEIEERVAEALELVGLEELLD--RPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTA 167 (235)
T ss_pred HHhhchhhcCCCHHHHHHHHHHHHHHcCchhhcc--CCccccCCcceeeHHhhHHHHcCCCEEEEcCCCC
Confidence 00 11234567788888765422 2223589999999999999999999999999954
No 450
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=3.4e-07 Score=87.15 Aligned_cols=115 Identities=13% Similarity=0.143 Sum_probs=78.2
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc---chhh---
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI---DIRD--- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i---~~r~--- 122 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++...+ .+++
T Consensus 19 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~ 98 (241)
T PRK14250 19 LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIE 98 (241)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHh
Confidence 44556666788899999999999999999999998777777766543310 1111111100 0011
Q ss_pred ---------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 123 ---------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 123 ---------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
..++.++++.+++... -.-.....+|+|+++++.+++++..+++++|+|.|
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 158 (241)
T PRK14250 99 YGPMLKGEKNVDVEYYLSIVGLNKE-YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEP 158 (241)
T ss_pred cchhhcCcHHHHHHHHHHHcCCCHH-HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1234567788887521 01122345899999999999999999999999999
No 451
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=3e-07 Score=86.92 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=75.7
Q ss_pred CCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------ccccccccc----------ccch--
Q 014354 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------AVMTLPFAA----------NIDI-- 120 (426)
Q Consensus 61 ~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------~v~~~~~~t----------~i~~-- 120 (426)
+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+. .+...++.. ++..
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 96 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL 96 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccc
Confidence 34455667889999999999999999999999877776665544321 011111111 1110
Q ss_pred --------hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 121 --------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 121 --------r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
....++.++++.+++.+. +-.....||+|+++++.+++++..+++++|+|.|
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 156 (232)
T PRK10771 97 NPGLKLNAAQREKLHAIARQMGIEDL--LARLPGQLSGGQRQRVALARCLVREQPILLLDEP 156 (232)
T ss_pred ccccCCCHHHHHHHHHHHHHcCcHHH--HhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 011234556777877532 1222345899999999999999999999999999
No 452
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.63 E-value=4.1e-07 Score=86.37 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=77.3
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc---------cccccc-ccccc----chhhh-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP---------AVMTLP-FAANI----DIRDT- 123 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~---------~v~~~~-~~t~i----~~r~~- 123 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+...+ ....+ ..++.
T Consensus 37 l~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l 116 (236)
T cd03267 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSF 116 (236)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHH
Confidence 5566677778899999999999999999999998777766666543321 011111 10000 00110
Q ss_pred ---------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 124 ---------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 124 ---------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
..+..+++.+++.+. .-.....+|+|+++++.++.++..+++++|+|.|-
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 117 YLLAAIYDLPPARFKKRLDELSELLDLEEL--LDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhH--hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 123445677776532 12233458999999999999999999999999993
No 453
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.63 E-value=1.6e-07 Score=89.32 Aligned_cols=115 Identities=15% Similarity=0.143 Sum_probs=79.2
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----------ccccccccc----cchh--
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------VMTLPFAAN----IDIR-- 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----------v~~~~~~t~----i~~r-- 121 (426)
..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.. +...++... ..+.
T Consensus 18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~n 97 (242)
T TIGR03411 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFEN 97 (242)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHH
Confidence 45566667788899999999999999999999998777777666553311 111111100 0011
Q ss_pred ----------------------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 122 ----------------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 122 ----------------------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
....+.++++.+++.+.. -.....+|+|+++++.+++++..+++++++|.|=
T Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt 171 (242)
T TIGR03411 98 LELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA--DRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPV 171 (242)
T ss_pred HHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhh--cCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 112345567788876421 2233468999999999999999999999999993
No 454
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.2e-07 Score=96.30 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=89.8
Q ss_pred hhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccc
Q 014354 45 MDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPF 114 (426)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~ 114 (426)
..++...++.......+.+...+++..++|+|++|+|||||++.|+|...+..+.+.+-+.+- .++.+++
T Consensus 323 ~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q 402 (559)
T COG4988 323 LENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402 (559)
T ss_pred ecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCC
Confidence 445555444433446677788889999999999999999999999999988888877765541 1333333
Q ss_pred cccc---chhhhH----------HHHHHHHHcCCCC----CCCccc----ccccccccHHHHHHHHHHHhcCCCEEEEcC
Q 014354 115 AANI---DIRDTI----------RYKEVMKQFNLGP----NGGILT----SLNLFTTKFDEVISLIERRADHLDYVLVDT 173 (426)
Q Consensus 115 ~t~i---~~r~~~----------~~~~~~~~~~l~~----ng~i~~----~~~~ls~~~~~~~~~~~~~~~~~~~~liDT 173 (426)
.+.+ .+|+++ .+.+++++.++.+ +.|.-+ .-+-+|+|+.+++.+++++..+.++++.|.
T Consensus 403 ~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDE 482 (559)
T COG4988 403 NPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDE 482 (559)
T ss_pred CCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 3322 244443 2344455444332 123222 223489999999999999999999999999
Q ss_pred CC
Q 014354 174 PG 175 (426)
Q Consensus 174 PG 175 (426)
|-
T Consensus 483 pT 484 (559)
T COG4988 483 PT 484 (559)
T ss_pred Cc
Confidence 94
No 455
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.63 E-value=2.4e-07 Score=87.20 Aligned_cols=106 Identities=16% Similarity=0.241 Sum_probs=73.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-----cccccccccc------cch---------------
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-----AVMTLPFAAN------IDI--------------- 120 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-----~v~~~~~~t~------i~~--------------- 120 (426)
.++.+++|+|++|||||||++.|.|...+..+.+.+.+.++ .+...++... ..+
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~ 83 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWL 83 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccc
Confidence 46778999999999999999999998777776665544321 1111111100 000
Q ss_pred -----hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 121 -----RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 121 -----r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
.....+.++++.+++.+... .....+|+|+++++.+++++..+++++|+|.|
T Consensus 84 ~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LS~G~~qrv~laral~~~p~llilDEP 140 (223)
T TIGR03771 84 RRPCVADFAAVRDALRRVGLTELAD--RPVGELSGGQRQRVLVARALATRPSVLLLDEP 140 (223)
T ss_pred cCCcHHHHHHHHHHHHHhCCchhhc--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 01123456678888764322 22345899999999999999999999999999
No 456
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=3e-07 Score=89.76 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=80.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc------------ccccccccc--c---chh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------------VMTLPFAAN--I---DIR 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~------------v~~~~~~t~--i---~~r 121 (426)
....+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.. +...++... + .++
T Consensus 22 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~ 101 (283)
T PRK13636 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVY 101 (283)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHH
Confidence 45566667788999999999999999999999998777777766554321 111111110 0 001
Q ss_pred h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
+ ...+.++++.+++.... -.....+|+|+++++.+++++..+++++|+|.|
T Consensus 102 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~--~~~~~~LS~G~~qrl~laraL~~~p~lLilDEP 168 (283)
T PRK13636 102 QDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK--DKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEP 168 (283)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh--hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1 12345668888876422 223446899999999999999999999999999
No 457
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=2.8e-07 Score=93.49 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=79.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------ccc-------ccccc---ccc-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMT-------LPFAA---NID- 119 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~-------~~~~t---~i~- 119 (426)
..+.+....++.+++|+|++|+||||||+.|.|...+..+.+.+.+.+.. +.. +|+.+ |+.
T Consensus 35 l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~ 114 (377)
T PRK11607 35 VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAF 114 (377)
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHH
Confidence 44556666788899999999999999999999998887777665443210 111 11111 111
Q ss_pred -hhh--------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 120 -IRD--------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 120 -~r~--------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
.+. ..++.++++.+++..... .....||+|+++++.+++++..+++++|+|.|
T Consensus 115 ~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~--~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP 176 (377)
T PRK11607 115 GLKQDKLPKAEIASRVNEMLGLVHMQEFAK--RKPHQLSGGQRQRVALARSLAKRPKLLLLDEP 176 (377)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhc--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 110 113456788888764322 22346899999999999999999999999999
No 458
>PRK10908 cell division protein FtsE; Provisional
Probab=98.62 E-value=1.5e-07 Score=88.30 Aligned_cols=115 Identities=11% Similarity=0.139 Sum_probs=78.4
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccccc----chh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAANI----DIR 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~i----~~r 121 (426)
..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+.+.. +...++...+ .++
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 97 (222)
T PRK10908 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVY 97 (222)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHH
Confidence 44556667788999999999999999999999998777777665443210 1111111110 011
Q ss_pred hhH----------------HHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 122 DTI----------------RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 122 ~~~----------------~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+.+ .+.++++.+++.+.. -.....||+|+++++.+++++..+++++|+|.|-
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (222)
T PRK10908 98 DNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKA--KNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPT 165 (222)
T ss_pred HHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhh--hCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 111 234567778775421 1223468999999999999999999999999994
No 459
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.62 E-value=4.2e-07 Score=87.01 Aligned_cols=115 Identities=14% Similarity=0.112 Sum_probs=78.0
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC-----c--------------ccccccccc---
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD-----P--------------AVMTLPFAA--- 116 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d-----~--------------~v~~~~~~t--- 116 (426)
..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+ . .+...++..
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 98 (253)
T TIGR02323 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDG 98 (253)
T ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccc
Confidence 445566677888999999999999999999999987777776664422 0 011111111
Q ss_pred ---------ccch-----------hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 117 ---------NIDI-----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 117 ---------~i~~-----------r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
++.. .....+.++++.+++... -.-.....||+|+++++.+++++..+++++|+|.|
T Consensus 99 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP 175 (253)
T TIGR02323 99 LRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPT-RIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEP 175 (253)
T ss_pred cCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChh-hhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1100 001234556788887421 12223346899999999999999999999999999
No 460
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.62 E-value=3.6e-07 Score=84.83 Aligned_cols=110 Identities=14% Similarity=0.160 Sum_probs=71.8
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhhH-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDTI- 124 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~~- 124 (426)
..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+. .+...++...+ .+.+.+
T Consensus 24 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~ 103 (207)
T cd03369 24 LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLD 103 (207)
T ss_pred ccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhc
Confidence 4455666678889999999999999999999998877777666544321 01111111100 011111
Q ss_pred -----HHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 125 -----RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 125 -----~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
...++...+.+ -.....||+++++++.+++++..+++++|+|.|
T Consensus 104 ~~~~~~~~~~~~~l~~------~~~~~~LS~G~~qrv~laral~~~p~llllDEP 152 (207)
T cd03369 104 PFDEYSDEEIYGALRV------SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEA 152 (207)
T ss_pred ccCCCCHHHHHHHhhc------cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 11222333332 123346899999999999999999999999999
No 461
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.62 E-value=5.1e-07 Score=83.42 Aligned_cols=115 Identities=14% Similarity=0.137 Sum_probs=79.7
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccc----ccchhhh--
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAA----NIDIRDT-- 123 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t----~i~~r~~-- 123 (426)
..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.. +...+... ...+++.
T Consensus 17 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~ 96 (200)
T PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCL 96 (200)
T ss_pred EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHH
Confidence 45556667788999999999999999999999998887777776543211 11111110 0111111
Q ss_pred ---------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 124 ---------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 124 ---------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
..+.++++.+++... .-.....+|+|+++++.+++++..+++++|+|.|-
T Consensus 97 ~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~ 155 (200)
T PRK13540 97 YDIHFSPGAVGITELCRLFSLEHL--IDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPL 155 (200)
T ss_pred HHHhcCcchHHHHHHHHHcCCchh--hhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 134667788777532 11223458999999999999999999999999993
No 462
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.62 E-value=3.4e-07 Score=85.08 Aligned_cols=115 Identities=14% Similarity=0.121 Sum_probs=79.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------ccccccc-------c---ccchh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------VMTLPFA-------A---NIDIR 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------v~~~~~~-------t---~i~~r 121 (426)
..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.. +...++. + ++...
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~ 97 (207)
T PRK13539 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFW 97 (207)
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHH
Confidence 45566667788999999999999999999999998777777665443210 1111111 1 11000
Q ss_pred ------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 122 ------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 122 ------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
....+.++++.+++.... -.....+|+|+++++.+++++..+++++|+|.|-
T Consensus 98 ~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 155 (207)
T PRK13539 98 AAFLGGEELDIAAALEAVGLAPLA--HLPFGYLSAGQKRRVALARLLVSNRPIWILDEPT 155 (207)
T ss_pred HHhcCCcHHHHHHHHHHcCCHHHH--cCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 011246678888875421 1223468999999999999999999999999994
No 463
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=3.7e-07 Score=88.46 Aligned_cols=115 Identities=10% Similarity=0.038 Sum_probs=77.5
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccc-----ccchhhh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAA-----NIDIRDT 123 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t-----~i~~r~~ 123 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++.. ...+++.
T Consensus 25 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en 104 (271)
T PRK13632 25 LKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDD 104 (271)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHH
Confidence 44555666788899999999999999999999998777666655443210 11111111 0001111
Q ss_pred ----------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 124 ----------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 124 ----------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
..+.++++.+++.+.. -.....||+|+++++.+++++..+++++|+|.|-
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~ 170 (271)
T PRK13632 105 IAFGLENKKVPPKKMKDIIDDLAKKVGMEDYL--DKEPQNLSGGQKQRVAIASVLALNPEIIIFDEST 170 (271)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHh--hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 1234567777775321 1222468999999999999999999999999993
No 464
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.61 E-value=3.8e-07 Score=87.30 Aligned_cols=114 Identities=13% Similarity=0.033 Sum_probs=76.9
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-----------------------cccccccc
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-----------------------AVMTLPFA 115 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-----------------------~v~~~~~~ 115 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+...++.
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 95 (252)
T TIGR03005 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQS 95 (252)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecC
Confidence 4455666778889999999999999999999998877766665543211 01111111
Q ss_pred c----------ccchh-----------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 116 A----------NIDIR-----------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 116 t----------~i~~r-----------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
. ++... ....+.++++.+++... .-.....+|+|+++++.+++++..+++++|+|.|
T Consensus 96 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 173 (252)
T TIGR03005 96 FNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADK--ADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV 173 (252)
T ss_pred cccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH--hhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1 01010 01124566778877532 1122345899999999999999999999999999
No 465
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.61 E-value=6.5e-07 Score=84.15 Aligned_cols=116 Identities=13% Similarity=0.079 Sum_probs=76.6
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccc------ccc
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAA------NID 119 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t------~i~ 119 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++.. ...
T Consensus 21 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 100 (228)
T cd03257 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMT 100 (228)
T ss_pred ecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCC
Confidence 45566677788999999999999999999999998777777666443211 11111111 000
Q ss_pred hhhhH----------------H--HHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 120 IRDTI----------------R--YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 120 ~r~~~----------------~--~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+++.+ . ..++++.+++... -.-.....||+|+++++.+++++..+++++|+|.|=
T Consensus 101 v~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 173 (228)
T cd03257 101 IGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEE-VLNRYPHELSGGQRQRVAIARALALNPKLLIADEPT 173 (228)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChh-HhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 01100 1 1245667776321 011222458999999999999999999999999993
No 466
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.61 E-value=3.6e-07 Score=87.59 Aligned_cols=115 Identities=15% Similarity=0.133 Sum_probs=75.6
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEec--------cCccccc-ccccc--ccchh---hhH
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN--------LDPAVMT-LPFAA--NIDIR---DTI 124 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~--------~d~~v~~-~~~~t--~i~~r---~~~ 124 (426)
..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+ .++.... .+.+. .+... ...
T Consensus 20 l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~ 99 (251)
T PRK09544 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKE 99 (251)
T ss_pred EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHH
Confidence 3445566678889999999999999999999998776666544322 1221100 00000 00000 012
Q ss_pred HHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 125 RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 125 ~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.+.++++.+++... +-.....||+|+++++.++.++..+++++|+|.|=
T Consensus 100 ~~~~~l~~~gl~~~--~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt 148 (251)
T PRK09544 100 DILPALKRVQAGHL--IDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPT 148 (251)
T ss_pred HHHHHHHHcCChHH--HhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 34566778876532 11233468999999999999999999999999993
No 467
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.61 E-value=2.5e-07 Score=97.17 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=79.3
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccc----hhh------------
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANID----IRD------------ 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~----~r~------------ 122 (426)
....+....++-+|+|||.+|+||||||+.|.|...+..+.+.....- .+...++.+..+ +.+
T Consensus 19 ~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~-~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~ 97 (530)
T COG0488 19 LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGL-RVGYLSQEPPLDPEKTVLDYVIEGFGELREL 97 (530)
T ss_pred ecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCc-eEEEeCCCCCcCCCccHHHHHHhhhHHHHHH
Confidence 455666777888999999999999999999999998877665554321 111112111110 000
Q ss_pred ----------------------------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCE
Q 014354 123 ----------------------------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDY 168 (426)
Q Consensus 123 ----------------------------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~ 168 (426)
..++..++..+|+.+. -..+..||+|.+-++.+|+++...+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~---~~~~~~LSGG~r~Rv~LA~aL~~~pDl 174 (530)
T COG0488 98 LAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE---DRPVSSLSGGWRRRVALARALLEEPDL 174 (530)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc---cCchhhcCHHHHHHHHHHHHHhcCCCE
Confidence 1233445556666654 334456999999999999999999999
Q ss_pred EEEcCCC-ccc
Q 014354 169 VLVDTPG-QIE 178 (426)
Q Consensus 169 ~liDTPG-i~e 178 (426)
+++|.|- +.+
T Consensus 175 LLLDEPTNHLD 185 (530)
T COG0488 175 LLLDEPTNHLD 185 (530)
T ss_pred EEEcCCCcccC
Confidence 9999994 444
No 468
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=4.2e-07 Score=87.08 Aligned_cols=114 Identities=12% Similarity=0.096 Sum_probs=76.8
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----------cccccccccc----chhhh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------VMTLPFAANI----DIRDT 123 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----------v~~~~~~t~i----~~r~~ 123 (426)
..+.+....++.+++|+|++|+|||||++.|.|...+..+.+.+.+.+.. +...++...+ .+.+.
T Consensus 21 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~en 100 (255)
T PRK11300 21 VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIEN 100 (255)
T ss_pred EEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHH
Confidence 44555666788999999999999999999999998777776665443210 1101111100 01110
Q ss_pred -------------------------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEc
Q 014354 124 -------------------------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVD 172 (426)
Q Consensus 124 -------------------------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liD 172 (426)
..+.++++.+++... .-.....+|+|+++++.++.++..+++++|+|
T Consensus 101 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~~LS~G~~qrv~la~al~~~p~llllD 178 (255)
T PRK11300 101 LLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH--ANRQAGNLAYGQQRRLEIARCMVTQPEILMLD 178 (255)
T ss_pred HHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhh--hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 123445667776432 12233458999999999999999999999999
Q ss_pred CC
Q 014354 173 TP 174 (426)
Q Consensus 173 TP 174 (426)
.|
T Consensus 179 EP 180 (255)
T PRK11300 179 EP 180 (255)
T ss_pred CC
Confidence 99
No 469
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.61 E-value=2.4e-07 Score=82.22 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=56.7
Q ss_pred cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhH
Q 014354 196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTL 273 (426)
Q Consensus 196 ~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 273 (426)
..+|++++|+|+........ ..+...+. ..++|.|+|+||+|+..+.....|...+.
T Consensus 7 ~~aD~il~VvD~~~p~~~~~-----~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~---------------- 65 (157)
T cd01858 7 DSSDVVIQVLDARDPMGTRC-----KHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILS---------------- 65 (157)
T ss_pred hhCCEEEEEEECCCCccccC-----HHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHh----------------
Confidence 34799999999987654322 11222232 23589999999999987654433433332
Q ss_pred HHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354 274 TNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (426)
Q Consensus 274 ~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~ 311 (426)
+.+.+ .++++||+.|.|+..|+++|...
T Consensus 66 ---------~~~~~-~~~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 66 ---------KEYPT-IAFHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred ---------cCCcE-EEEEeeccccccHHHHHHHHHHH
Confidence 11222 26899999999999999988664
No 470
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.61 E-value=4.8e-08 Score=83.25 Aligned_cols=161 Identities=17% Similarity=0.196 Sum_probs=94.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
++..+++++|--||||||||..|.+....+ + ..+..+. ..++.
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~h------------l---tpT~GFn----------------------~k~v~ 57 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRH------------L---TPTNGFN----------------------TKKVE 57 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhh------------c---cccCCcc----------------------eEEEe
Confidence 567899999999999999999999876432 1 1111110 00000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhH-HHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNM-LYACS 225 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~-l~~~~ 225 (426)
..+.+.+.+||..|+.... .....++ +..|.++||||+...-. .+..+.. ...+.
T Consensus 58 ---------------~~g~f~LnvwDiGGqr~IR------pyWsNYy--envd~lIyVIDS~D~kr-feE~~~el~ELle 113 (185)
T KOG0074|consen 58 ---------------YDGTFHLNVWDIGGQRGIR------PYWSNYY--ENVDGLIYVIDSTDEKR-FEEISEELVELLE 113 (185)
T ss_pred ---------------ecCcEEEEEEecCCccccc------hhhhhhh--hccceEEEEEeCCchHh-HHHHHHHHHHHhh
Confidence 0244789999999985541 1111222 33689999999643211 1111111 12222
Q ss_pred HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
..+-..+|+.|..||-|+........+...+. -+ +.-.+ ...+-.+||++++|+.+-.
T Consensus 114 eeKl~~vpvlIfankQdlltaa~~eeia~kln---l~---------------~lrdR----swhIq~csals~eg~~dg~ 171 (185)
T KOG0074|consen 114 EEKLAEVPVLIFANKQDLLTAAKVEEIALKLN---LA---------------GLRDR----SWHIQECSALSLEGSTDGS 171 (185)
T ss_pred hhhhhccceeehhhhhHHHhhcchHHHHHhcc---hh---------------hhhhc----eEEeeeCccccccCccCcc
Confidence 23356789999999999887654433322111 00 00001 1347788999999998877
Q ss_pred HHHHH
Q 014354 306 KAVEE 310 (426)
Q Consensus 306 ~~l~~ 310 (426)
+++..
T Consensus 172 ~wv~s 176 (185)
T KOG0074|consen 172 DWVQS 176 (185)
T ss_pred hhhhc
Confidence 77764
No 471
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=3.3e-07 Score=92.31 Aligned_cols=163 Identities=18% Similarity=0.273 Sum_probs=100.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
.+++.+|+++|-+|+||||=|-.|+-+....+-++.|.++|+--+ ++ |. .-++.++.+ ..++ | +..
T Consensus 375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRs----GA-vE-QLrtHv~rl-~~l~-----~--~~v 440 (587)
T KOG0781|consen 375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRS----GA-VE-QLRTHVERL-SALH-----G--TMV 440 (587)
T ss_pred cCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhh----hH-HH-HHHHHHHHH-HHhc-----c--chh
Confidence 457899999999999999999999999999999999999885321 11 10 001111111 1110 0 000
Q ss_pred ccccc------cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhh
Q 014354 146 NLFTT------KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSN 219 (426)
Q Consensus 146 ~~ls~------~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~ 219 (426)
.+|.. ..--+.++..+...++++++|||+|-..- ...+...+........+|.|+||=-|--|-+..+....
T Consensus 441 ~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~--~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~ 518 (587)
T KOG0781|consen 441 ELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHN--NAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKK 518 (587)
T ss_pred HHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccC--ChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHH
Confidence 01100 11122345566788999999999996442 33344555555566789999999888666555443322
Q ss_pred HHHHHHHHhhcc---CCeEEEEecCCCCChH
Q 014354 220 MLYACSILYKTR---LPLVLAFNKTDVAQHE 247 (426)
Q Consensus 220 ~l~~~~~l~~~~---~P~IlVlNKiDl~~~~ 247 (426)
.- ..+.... .-.-|+++|+|.+...
T Consensus 519 fn---~al~~~~~~r~id~~~ltk~dtv~d~ 546 (587)
T KOG0781|consen 519 FN---RALADHSTPRLIDGILLTKFDTVDDK 546 (587)
T ss_pred HH---HHHhcCCCccccceEEEEeccchhhH
Confidence 22 2233333 3356899999988764
No 472
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.61 E-value=5.8e-07 Score=86.24 Aligned_cols=117 Identities=10% Similarity=0.040 Sum_probs=77.9
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHccccc----CCceEEEeccCc--------ccccccccc----------
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS----RNIRGYVMNLDP--------AVMTLPFAA---------- 116 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~----~~~~~~i~~~d~--------~v~~~~~~t---------- 116 (426)
..+.+....++.+++|+|++|||||||++.|.|...+ ..+.+.+.+.+. .+...++..
T Consensus 19 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~ 98 (254)
T PRK10418 19 VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTM 98 (254)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccH
Confidence 4456666778889999999999999999999998766 555555433221 011111110
Q ss_pred --ccch--------hhhHHHHHHHHHcCCCCCCC-cccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 117 --NIDI--------RDTIRYKEVMKQFNLGPNGG-ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 117 --~i~~--------r~~~~~~~~~~~~~l~~ng~-i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
++.. .....+.++++.+++.+... +-.....+|+|+++++.+++++..+++++|+|.|-
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt 168 (254)
T PRK10418 99 HTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPT 168 (254)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0000 01123456788888765211 11223458999999999999999999999999994
No 473
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.60 E-value=1.4e-07 Score=94.43 Aligned_cols=105 Identities=17% Similarity=0.221 Sum_probs=64.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
..++|+|.||+|||||+|+|++.... .+.++|++| +.||.|++.- -.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~------------~~a~ypftT------------------i~p~~g~v~v---~d 49 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGN------------EAANPPFTT------------------IEPNAGVVNP---SD 49 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCcc------------ccCCCCCCC------------------CCCceeEEEe---ch
Confidence 57899999999999999999998741 145667775 2334444331 01
Q ss_pred ccHHHHHHHHHHH-hcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354 150 TKFDEVISLIERR-ADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPR 209 (426)
Q Consensus 150 ~~~~~~~~~~~~~-~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~ 209 (426)
.-++++..+.... .....+.++|.||+......+ .++..+...++ .+|++++||+++.
T Consensus 50 ~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir--~~d~l~hVvr~f~ 109 (368)
T TIGR00092 50 PRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIR--EVDIIQHVVRCFE 109 (368)
T ss_pred hHHHHHHHHhCCcCcCCceEEEEeccccccchhcccCcchHHHHHHH--hCCEEEEEEeCCC
Confidence 1122222221111 122478999999998753222 24555555443 4699999999974
No 474
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.60 E-value=1.8e-07 Score=85.76 Aligned_cols=114 Identities=16% Similarity=0.247 Sum_probs=80.1
Q ss_pred CCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------------cccccc---ccc
Q 014354 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------------VMTLPF---AAN 117 (426)
Q Consensus 60 ~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------------v~~~~~---~t~ 117 (426)
...+.....+-+|.|+|.+|||||||+|.|.|.....++.+.|.+.|-. ....|. ..|
T Consensus 23 ~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieEN 102 (263)
T COG1101 23 NGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEEN 102 (263)
T ss_pred hcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHH
Confidence 3444555677899999999999999999999999999999999887611 100000 001
Q ss_pred cchh----------------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcC
Q 014354 118 IDIR----------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDT 173 (426)
Q Consensus 118 i~~r----------------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDT 173 (426)
+.+. .+-.+.+.+..++++-..-.-..+.+||+|++|.+.++.+....++++|+|.
T Consensus 103 l~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE 174 (263)
T COG1101 103 LALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE 174 (263)
T ss_pred HHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc
Confidence 1110 0111233455666554444556667899999999999999999999999996
No 475
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.60 E-value=1.8e-07 Score=88.93 Aligned_cols=114 Identities=12% Similarity=0.088 Sum_probs=78.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc------------ccccccccc---------
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------------VMTLPFAAN--------- 117 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~------------v~~~~~~t~--------- 117 (426)
..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.. +...++...
T Consensus 17 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 96 (240)
T PRK09493 17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALE 96 (240)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHH
Confidence 44556666788899999999999999999999998777777666543211 111111110
Q ss_pred -cchh-----------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 118 -IDIR-----------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 118 -i~~r-----------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
+... ....+.++++.+++.+.. -.....||+|+++++.+++++..+++++|+|.|
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 163 (240)
T PRK09493 97 NVMFGPLRVRGASKEEAEKQARELLAKVGLAERA--HHYPSELSGGQQQRVAIARALAVKPKLMLFDEP 163 (240)
T ss_pred HHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHH--hcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1000 011235677888875421 122345899999999999999999999999999
No 476
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=4.3e-07 Score=87.73 Aligned_cols=115 Identities=17% Similarity=0.115 Sum_probs=77.7
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------cccccccc-------c---cc
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFA-------A---NI 118 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~-------t---~i 118 (426)
..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+. .+...++. + ++
T Consensus 27 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 106 (265)
T PRK10575 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELV 106 (265)
T ss_pred EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHH
Confidence 4556666778899999999999999999999999777766665544221 01111111 0 01
Q ss_pred ch--------------hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 119 DI--------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 119 ~~--------------r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.. .....+.++++.+++... +-.....||+|+++++.+++++..+++++|+|.|-
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt 175 (265)
T PRK10575 107 AIGRYPWHGALGRFGAADREKVEEAISLVGLKPL--AHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPT 175 (265)
T ss_pred HhCcccccccccCCCHHHHHHHHHHHHHcCCHHH--hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 00 001134556777777532 12223458999999999999999999999999993
No 477
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.60 E-value=1.7e-07 Score=84.07 Aligned_cols=100 Identities=11% Similarity=0.094 Sum_probs=69.4
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccccccccccc---chhhhHHHHHHHHHcCC
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANI---DIRDTIRYKEVMKQFNL 135 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i---~~r~~~~~~~~~~~~~l 135 (426)
..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+. ..+...++...+ .+.+.+ .+
T Consensus 17 l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-~~i~~~~q~~~~~~~tv~~nl---------~~ 86 (166)
T cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-EDLLFLPQRPYLPLGTLREQL---------IY 86 (166)
T ss_pred eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-ceEEEECCCCccccccHHHHh---------hc
Confidence 44556667788899999999999999999999998777776655321 112222222111 112211 11
Q ss_pred CCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 136 GPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 136 ~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
. ....||+++++++.+++++..+++++++|.|=
T Consensus 87 ~-------~~~~LS~G~~~rv~laral~~~p~~lllDEPt 119 (166)
T cd03223 87 P-------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT 119 (166)
T ss_pred c-------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 0 12458999999999999999999999999993
No 478
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.60 E-value=6.3e-07 Score=83.72 Aligned_cols=115 Identities=13% Similarity=0.038 Sum_probs=77.8
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------ccccccccc----cchhhh----
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------VMTLPFAAN----IDIRDT---- 123 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------v~~~~~~t~----i~~r~~---- 123 (426)
..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.. +..+++... ..+.+.
T Consensus 27 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~ 106 (214)
T PRK13543 27 FGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFL 106 (214)
T ss_pred eecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHH
Confidence 45566667788899999999999999999999987777666655432210 111111110 011111
Q ss_pred ---------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 124 ---------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 124 ---------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
....+++..+++... .-.....||+|+++++.+++++..+++++|+|.|-
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (214)
T PRK13543 107 CGLHGRRAKQMPGSALAIVGLAGY--EDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPY 165 (214)
T ss_pred HHhcCCcHHHHHHHHHHHcCChhh--ccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 122456777776532 22233468999999999999999999999999994
No 479
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=4.2e-07 Score=88.96 Aligned_cols=116 Identities=16% Similarity=0.094 Sum_probs=76.9
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc---------------cccccccccc---c--
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP---------------AVMTLPFAAN---I-- 118 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~---------------~v~~~~~~t~---i-- 118 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+...++... +
T Consensus 27 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 106 (289)
T PRK13645 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQE 106 (289)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhh
Confidence 4455666778889999999999999999999999877777666543221 0111121110 0
Q ss_pred chhhh----------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 119 DIRDT----------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 119 ~~r~~----------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.+++. ..+.++++.+++.. +-.-.....||+|+++++.+++++..+++++|+|.|-
T Consensus 107 tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt 178 (289)
T PRK13645 107 TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE-DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPT 178 (289)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 01110 12335677777631 1111233469999999999999999999999999993
No 480
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=4.3e-07 Score=88.05 Aligned_cols=114 Identities=16% Similarity=0.104 Sum_probs=77.6
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc------------cccccccc-------cc-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------------VMTLPFAA-------NI- 118 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~------------v~~~~~~t-------~i- 118 (426)
..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.. +...++.. .+
T Consensus 17 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~ 96 (271)
T PRK13638 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDID 96 (271)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHH
Confidence 45556667788899999999999999999999998777777665443310 11112111 01
Q ss_pred ---ch--h----h----hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 119 ---DI--R----D----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 119 ---~~--r----~----~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
.. + . ...+.++++.+++.... -.....||+|+++++.+++++..+++++|+|.|
T Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrl~laraL~~~p~lllLDEP 163 (271)
T PRK13638 97 SDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR--HQPIQCLSHGQKKRVAIAGALVLQARYLLLDEP 163 (271)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh--cCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 00 0 0 01234567777765321 122346899999999999999999999999999
No 481
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.60 E-value=4.6e-07 Score=87.51 Aligned_cols=115 Identities=12% Similarity=0.070 Sum_probs=78.7
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------ccccccc-------c---cc
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFA-------A---NI 118 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~-------t---~i 118 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++. + ++
T Consensus 23 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~ 102 (265)
T PRK10253 23 AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELV 102 (265)
T ss_pred eeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHH
Confidence 55666777788999999999999999999999998777776665443210 1111111 0 01
Q ss_pred ch--------------hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 119 DI--------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 119 ~~--------------r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.. .....+.++++.+++... .-.....||+|+++++.+++++..+++++|+|.|-
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 171 (265)
T PRK10253 103 ARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL--ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPT 171 (265)
T ss_pred HhCcccccccccCCCHHHHHHHHHHHHHcCCHHH--hcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 00 011134566777777532 12233469999999999999999999999999993
No 482
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.60 E-value=1.3e-06 Score=77.56 Aligned_cols=128 Identities=15% Similarity=0.124 Sum_probs=87.1
Q ss_pred hHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC-----------
Q 014354 38 KEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD----------- 106 (426)
Q Consensus 38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d----------- 106 (426)
+..+++.++...- ..++++...++.+.+|+|.+||||||||++|.+...+..+.+.....+
T Consensus 9 V~~lsk~Yg~~~g--------c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msE 80 (258)
T COG4107 9 VSGLSKLYGPGKG--------CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSE 80 (258)
T ss_pred ehhhhhhhCCCcC--------ccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhch
Confidence 3455666655443 556777788899999999999999999999999988876665443322
Q ss_pred -----------------ccc---cccccccccch-------hh--hH--HHHHHHHHcCCCCCCCcccccccccccHHHH
Q 014354 107 -----------------PAV---MTLPFAANIDI-------RD--TI--RYKEVMKQFNLGPNGGILTSLNLFTTKFDEV 155 (426)
Q Consensus 107 -----------------~~v---~~~~~~t~i~~-------r~--~~--~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~ 155 (426)
|.- .....+.||+. |+ .+ ...+|++++.+.+..- ----+.||++|+++
T Consensus 81 aeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~Ri-DD~PrtFSGGMqQR 159 (258)
T COG4107 81 AERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRI-DDLPRTFSGGMQQR 159 (258)
T ss_pred HHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccc-cCcccccchHHHHH
Confidence 110 01111223321 11 11 2346788888776522 11123589999999
Q ss_pred HHHHHHHhcCCCEEEEcCC
Q 014354 156 ISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 156 ~~~~~~~~~~~~~~liDTP 174 (426)
..+++.+-..+.++|+|.|
T Consensus 160 LQiARnLVt~PrLvfMDEP 178 (258)
T COG4107 160 LQIARNLVTRPRLVFMDEP 178 (258)
T ss_pred HHHHHHhccCCceEEecCC
Confidence 9999999999999999999
No 483
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.59 E-value=5.3e-08 Score=88.03 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~ 95 (426)
....++++|.||+|||||+|+|++....
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~ 143 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRAC 143 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccc
Confidence 4578999999999999999999987643
No 484
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.59 E-value=6.5e-07 Score=85.52 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=77.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc------------------ccccccccccc--
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP------------------AVMTLPFAANI-- 118 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~------------------~v~~~~~~t~i-- 118 (426)
..+.+....++.+++|+|++|+|||||++.|.|...+..+.+.+.+.+. .+...++...+
T Consensus 19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 98 (250)
T PRK11264 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFP 98 (250)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCC
Confidence 4556666778889999999999999999999998777666665433210 01111111100
Q ss_pred --chhh-----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 119 --DIRD-----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 119 --~~r~-----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.+.+ ...+.++++.+++.... -.....||+|+++++.+++++..+++++|+|.|-
T Consensus 99 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt 172 (250)
T PRK11264 99 HRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE--TSYPRRLSGGQQQRVAIARALAMRPEVILFDEPT 172 (250)
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh--hCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0111 01234567777775421 1223468999999999999999999999999993
No 485
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=4e-07 Score=89.02 Aligned_cols=114 Identities=12% Similarity=0.074 Sum_probs=78.7
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------cccccccc---cc--c
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFAA---NI--D 119 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~t---~i--~ 119 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++.. .+ .
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~t 102 (286)
T PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDT 102 (286)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhh
Confidence 55566667788999999999999999999999998887777766543310 11112111 00 0
Q ss_pred hhh----------------hHHHHHHHHHcCCC-CCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 120 IRD----------------TIRYKEVMKQFNLG-PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 120 ~r~----------------~~~~~~~~~~~~l~-~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
+.+ ..++.++++.+++. .... .....||+|+++++.+++++..+++++|+|.|
T Consensus 103 v~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~--~~~~~LSgGq~qrv~laraL~~~p~illlDEP 172 (286)
T PRK13646 103 VEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMS--QSPFQMSGGQMRKIAIVSILAMNPDIIVLDEP 172 (286)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh--CCcccCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 011 11234667788875 2111 22335899999999999999999999999999
No 486
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=5.9e-08 Score=92.62 Aligned_cols=119 Identities=17% Similarity=0.200 Sum_probs=80.8
Q ss_pred CEEEEcCCCcccccchhchHHHHHHH-HHh-cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354 167 DYVLVDTPGQIEIFTWSASGAIITEA-FAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 167 ~~~liDTPGi~e~~~~~~~~~~l~~~-~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
.+-|+|.||+. +++.. +.. +--|.++++|-+.+.+ ++...+..+.+..+|.- +-++|+-||+|++
T Consensus 126 HVSfVDCPGHD----------iLMaTMLnGaAvmDaalLlIA~NEsC-PQPQTsEHLaaveiM~L--khiiilQNKiDli 192 (466)
T KOG0466|consen 126 HVSFVDCPGHD----------ILMATMLNGAAVMDAALLLIAGNESC-PQPQTSEHLAAVEIMKL--KHIIILQNKIDLI 192 (466)
T ss_pred EEEeccCCchH----------HHHHHHhcchHHhhhhhhhhhcCCCC-CCCchhhHHHHHHHhhh--ceEEEEechhhhh
Confidence 56799999983 23222 221 2247788888776654 33333444544444432 2457889999999
Q ss_pred ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHHHhh
Q 014354 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMET 318 (426)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~~~ 318 (426)
+.....+..+.+..|... .....+|+||+||--+.+++.+.++|.+.+|.....
T Consensus 193 ~e~~A~eq~e~I~kFi~~--------------------t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRd 246 (466)
T KOG0466|consen 193 KESQALEQHEQIQKFIQG--------------------TVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRD 246 (466)
T ss_pred hHHHHHHHHHHHHHHHhc--------------------cccCCCceeeehhhhccChHHHHHHHHhcCCCCccc
Confidence 988777777766655432 334668999999999999999999999988775443
No 487
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.59 E-value=3.4e-07 Score=83.01 Aligned_cols=112 Identities=21% Similarity=0.227 Sum_probs=68.7
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCC
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN 138 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~n 138 (426)
....+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.. ..+... ...+..+.+ +.....+-++
T Consensus 16 l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~--~~~~~~-~~~~~~i~~--~~q~~~~~~~ 90 (178)
T cd03229 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLT--DLEDEL-PPLRRRIGM--VFQDFALFPH 90 (178)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc--ccchhH-HHHhhcEEE--EecCCccCCC
Confidence 34445566788899999999999999999999998777777776543321 110000 000000000 0000001111
Q ss_pred CCccccccc-ccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 139 GGILTSLNL-FTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 139 g~i~~~~~~-ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
..+.-.+.+ +|+|+++++.+++++..+++++++|.|=
T Consensus 91 ~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 91 LTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred CCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 111111112 8999999999999999999999999993
No 488
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.59 E-value=6.7e-07 Score=96.86 Aligned_cols=151 Identities=15% Similarity=0.088 Sum_probs=81.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccccc-CC-ceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS-RN-IRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~-~~-~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
++.+|+|+|++||||||++.+|.+.... .+ .++.++..|+.- + .-.-......+.+++... ++.
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R--------i--gA~eQL~~~a~~~gvpv~--~~~-- 249 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR--------I--GALEQLRIYGRILGVPVH--AVK-- 249 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc--------h--HHHHHHHHHHHhCCCCcc--ccC--
Confidence 4679999999999999999999998743 33 477787766311 0 000111122233332111 011
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
.-......+. ...+++++||||||.... ...+...+........++-+++|+|+..... .+ ..+..
T Consensus 250 -----~~~~l~~al~-~~~~~D~VLIDTAGRs~~--d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~--~l----~~i~~ 315 (767)
T PRK14723 250 -----DAADLRFALA-ALGDKHLVLIDTVGMSQR--DRNVSEQIAMLCGVGRPVRRLLLLNAASHGD--TL----NEVVH 315 (767)
T ss_pred -----CHHHHHHHHH-HhcCCCEEEEeCCCCCcc--CHHHHHHHHHHhccCCCCeEEEEECCCCcHH--HH----HHHHH
Confidence 1122222222 245689999999997543 1222222222222344678899999975322 11 11111
Q ss_pred HHhhc-c-CCeEEEEecCCCCCh
Q 014354 226 ILYKT-R-LPLVLAFNKTDVAQH 246 (426)
Q Consensus 226 ~l~~~-~-~P~IlVlNKiDl~~~ 246 (426)
..... . -+.=+|++|.|-...
T Consensus 316 ~f~~~~~~~i~glIlTKLDEt~~ 338 (767)
T PRK14723 316 AYRHGAGEDVDGCIITKLDEATH 338 (767)
T ss_pred HHhhcccCCCCEEEEeccCCCCC
Confidence 11111 1 245688999997764
No 489
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.59 E-value=4.4e-07 Score=84.06 Aligned_cols=108 Identities=13% Similarity=0.095 Sum_probs=70.3
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccc---cCCceEEEeccCccc---------cccccccc----cchhh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ---SRNIRGYVMNLDPAV---------MTLPFAAN----IDIRD 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~---~~~~~~~i~~~d~~v---------~~~~~~t~----i~~r~ 122 (426)
..+.+....++.+++|+|++|+|||||++.|+|... +..+.+.+.+.+... ...++... ..+++
T Consensus 23 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 102 (202)
T cd03233 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRE 102 (202)
T ss_pred eeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHH
Confidence 344555667888999999999999999999999976 566766665543211 11111110 01222
Q ss_pred hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 123 TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 123 ~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.+.+.. ... .-.....||+++++++.+++++..+++++|+|.|=
T Consensus 103 ~l~~~~---~~~------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt 146 (202)
T cd03233 103 TLDFAL---RCK------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNST 146 (202)
T ss_pred HHhhhh---hhc------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 221110 010 11222358999999999999999999999999993
No 490
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.59 E-value=1.2e-07 Score=83.20 Aligned_cols=82 Identities=15% Similarity=0.096 Sum_probs=63.2
Q ss_pred CCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCC
Q 014354 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNG 139 (426)
Q Consensus 60 ~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng 139 (426)
.+.+....++.+++|+|++|+|||||++.|.|...+..+.+.+.+. .. -
T Consensus 17 ~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~---------------------------i 65 (144)
T cd03221 17 KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VK---------------------------I 65 (144)
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EE---------------------------E
Confidence 3445556678899999999999999999999998776666554321 00 0
Q ss_pred CcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 140 GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 140 ~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+++. .+|.++++++.+++++..+++++++|.|=
T Consensus 66 ~~~~---~lS~G~~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 66 GYFE---QLSGGEKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred EEEc---cCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1111 17999999999999999999999999993
No 491
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.59 E-value=3.5e-07 Score=98.29 Aligned_cols=119 Identities=12% Similarity=0.079 Sum_probs=82.8
Q ss_pred CCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhhH
Q 014354 58 AGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDTI 124 (426)
Q Consensus 58 ~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~~ 124 (426)
...+.+...+++.+|+|+|++|+|||||++.|+|...+.++.+.+.+.+- .+...|+.+.+ .+++.+
T Consensus 356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI 435 (592)
T PRK10790 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANV 435 (592)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHH
Confidence 35666777889999999999999999999999999999888887766541 12233333321 133333
Q ss_pred ---------HHHHHHHHcCCC------CC---CCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCc
Q 014354 125 ---------RYKEVMKQFNLG------PN---GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (426)
Q Consensus 125 ---------~~~~~~~~~~l~------~n---g~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi 176 (426)
.+.++++..++. |+ .-+...-..||+|++|++.+++++.++++++++|.|--
T Consensus 436 ~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts 505 (592)
T PRK10790 436 TLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATA 505 (592)
T ss_pred HhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 233445555433 11 11111223489999999999999999999999999964
No 492
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.59 E-value=2.1e-06 Score=87.05 Aligned_cols=148 Identities=19% Similarity=0.213 Sum_probs=81.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccccc----CCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS----RNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT 143 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~----~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~ 143 (426)
++.+|+++|++|+||||.+..|...... .+..+.++..|+.- .++ ........+.+++. +..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R----~aa------~eQL~~~a~~lgvp----v~~ 238 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR----IGA------KKQIQTYGDIMGIP----VKA 238 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc----HHH------HHHHHHHhhcCCcc----eEe
Confidence 4579999999999999999999976542 46788888777421 011 01111112223321 111
Q ss_pred ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCC-cEEEEEEeCCCCCCchhhhhhHHH
Q 014354 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFP-TVVTYVVDTPRSANPMTFMSNMLY 222 (426)
Q Consensus 144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~-d~vl~VVDa~~~~~~~~~~~~~l~ 222 (426)
..........+. ...+++++||||||..... ...-..+.+.+....+ .-+++|+|++.+.....
T Consensus 239 -----~~~~~~l~~~L~-~~~~~DlVLIDTaGr~~~~--~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~------- 303 (388)
T PRK12723 239 -----IESFKDLKEEIT-QSKDFDLVLVDTIGKSPKD--FMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK------- 303 (388)
T ss_pred -----eCcHHHHHHHHH-HhCCCCEEEEcCCCCCccC--HHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-------
Confidence 111222222222 2367999999999975421 1011223333333333 36889999987643321
Q ss_pred HHHHHhhcc--CCeEEEEecCCCCCh
Q 014354 223 ACSILYKTR--LPLVLAFNKTDVAQH 246 (426)
Q Consensus 223 ~~~~l~~~~--~P~IlVlNKiDl~~~ 246 (426)
..+.+.. -+.=+|++|.|-...
T Consensus 304 --~~~~~~~~~~~~~~I~TKlDet~~ 327 (388)
T PRK12723 304 --EIFHQFSPFSYKTVIFTKLDETTC 327 (388)
T ss_pred --HHHHHhcCCCCCEEEEEeccCCCc
Confidence 1122221 256789999997664
No 493
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=5.3e-07 Score=87.31 Aligned_cols=114 Identities=14% Similarity=0.087 Sum_probs=78.7
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccc-------cc---
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAA-------NI--- 118 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t-------~i--- 118 (426)
..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.. +..+++.. ++
T Consensus 25 l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~ 104 (269)
T PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYD 104 (269)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHH
Confidence 44555666788899999999999999999999998777777766553310 11111111 00
Q ss_pred -c--hh--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 119 -D--IR--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 119 -~--~r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
. .. ....+.++++.+++.+... .....+|+|+++++.+++++..+++++|+|.|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LS~G~~qrl~laral~~~p~lllLDEP 169 (269)
T PRK13648 105 VAFGLENHAVPYDEMHRRVSEALKQVDMLERAD--YEPNALSGGQKQRVAIAGVLALNPSVIILDEA 169 (269)
T ss_pred HHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh--CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 0 00 0112456688888764322 22235899999999999999999999999999
No 494
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.59 E-value=5.1e-07 Score=84.60 Aligned_cols=114 Identities=16% Similarity=0.189 Sum_probs=75.3
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----------cccccccccc----chhhh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------VMTLPFAANI----DIRDT 123 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----------v~~~~~~t~i----~~r~~ 123 (426)
..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+.+.. +...++...+ .+++.
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 95 (222)
T cd03224 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEEN 95 (222)
T ss_pred eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHH
Confidence 44555667788999999999999999999999998777777766543210 1111211110 01111
Q ss_pred H--------------HHHHHHHHc-CCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 124 I--------------RYKEVMKQF-NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 124 ~--------------~~~~~~~~~-~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
+ .+.++++.+ ++.. ..-.....+|+|+++++.+++++..+++++|+|.|
T Consensus 96 l~~~~~~~~~~~~~~~~~~~l~~~~~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 159 (222)
T cd03224 96 LLLGAYARRRAKRKARLERVYELFPRLKE--RRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP 159 (222)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHhhhh--hhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 1 123345555 2322 12233346899999999999999999999999999
No 495
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=1.8e-07 Score=90.61 Aligned_cols=142 Identities=17% Similarity=0.180 Sum_probs=89.2
Q ss_pred CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc
Q 014354 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT 143 (426)
Q Consensus 64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~ 143 (426)
...++...|+-||+...|||||-.+|+.-.-..+...+. .|. .||.... -+..|+.-|.+.+-
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~----------kyd-eID~APE------EkaRGITIn~aHve 111 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFK----------KYD-EIDKAPE------EKARGITINAAHVE 111 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHHHHhccccccc----------cHh-hhhcChh------hhhccceEeeeeee
Confidence 345566799999999999999999999876554432211 111 0110000 11233333333221
Q ss_pred ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHHH
Q 014354 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLY 222 (426)
Q Consensus 144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l~ 222 (426)
. . -....|--+|.||+.++ +..++.. +.-|.+|+||.++.+.-+++ +.
T Consensus 112 Y----e-------------Ta~RhYaH~DCPGHADY---------IKNMItGaaqMDGaILVVaatDG~MPQT-----rE 160 (449)
T KOG0460|consen 112 Y----E-------------TAKRHYAHTDCPGHADY---------IKNMITGAAQMDGAILVVAATDGPMPQT-----RE 160 (449)
T ss_pred e----e-------------ccccccccCCCCchHHH---------HHHhhcCccccCceEEEEEcCCCCCcch-----HH
Confidence 1 1 12357788999999885 2222222 34589999999999999988 44
Q ss_pred HHHHHhhccCCeEE-EEecCCCCChHhHHHHH
Q 014354 223 ACSILYKTRLPLVL-AFNKTDVAQHEFALEWM 253 (426)
Q Consensus 223 ~~~~l~~~~~P~Il-VlNKiDl~~~~~~~~~~ 253 (426)
.+-+.+|.+++.|+ .+||.|++...+..++.
T Consensus 161 HlLLArQVGV~~ivvfiNKvD~V~d~e~leLV 192 (449)
T KOG0460|consen 161 HLLLARQVGVKHIVVFINKVDLVDDPEMLELV 192 (449)
T ss_pred HHHHHHHcCCceEEEEEecccccCCHHHHHHH
Confidence 45567889988665 59999999666544443
No 496
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.59 E-value=1.1e-06 Score=84.84 Aligned_cols=151 Identities=15% Similarity=0.204 Sum_probs=82.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
++.+++++|++|+|||||+..|.+.....+..+.++..|+.- ... .. ......+.+++. +..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r----i~~----~~--ql~~~~~~~~~~----~~~---- 135 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR----IGT----VQ--QLQDYVKTIGFE----VIA---- 135 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC----HHH----HH--HHHHHhhhcCce----EEe----
Confidence 567999999999999999999998876556677777665321 000 00 000111111111 000
Q ss_pred ccccHHHHHHHHHHH--hcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 148 FTTKFDEVISLIERR--ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 148 ls~~~~~~~~~~~~~--~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
......+...+..+ ..+++++||||||.... ....-..+.+.+....++.+++|+++....... ..++.
T Consensus 136 -~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~--~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~------~~~~~ 206 (270)
T PRK06731 136 -VRDEAAMTRALTYFKEEARVDYILIDTAGKNYR--ASETVEEMIETMGQVEPDYICLTLSASMKSKDM------IEIIT 206 (270)
T ss_pred -cCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcC--CHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHH------HHHHH
Confidence 01111111112111 24689999999998543 122223334444445578899999986543221 11222
Q ss_pred HHhhccCCeEEEEecCCCCCh
Q 014354 226 ILYKTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~ 246 (426)
.... --+.=+|++|.|-...
T Consensus 207 ~f~~-~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 207 NFKD-IHIDGIVFTKFDETAS 226 (270)
T ss_pred HhCC-CCCCEEEEEeecCCCC
Confidence 2222 2345789999998764
No 497
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.59 E-value=4.6e-07 Score=87.61 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=79.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccc------------
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAA------------ 116 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t------------ 116 (426)
..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.. +...++..
T Consensus 29 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~ 108 (267)
T PRK15112 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQ 108 (267)
T ss_pred eeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHH
Confidence 45566677788899999999999999999999998887777766543211 11111111
Q ss_pred ccc--hhh---------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 117 NID--IRD---------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 117 ~i~--~r~---------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
++. .+. ...+.++++.+++.+... -.....||+|+++++.+++++..+++++|+|.|=
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 177 (267)
T PRK15112 109 ILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-SYYPHMLAPGQKQRLGLARALILRPKVIIADEAL 177 (267)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH-hcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 010 000 112456788888743211 1122458999999999999999999999999993
No 498
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.58 E-value=4e-07 Score=80.54 Aligned_cols=86 Identities=20% Similarity=0.218 Sum_probs=58.4
Q ss_pred CCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHH
Q 014354 197 FPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNS 276 (426)
Q Consensus 197 ~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 276 (426)
.+|++++|+|+........ ..+...+...++|+++|+||+|+........+. .+.
T Consensus 12 ~aD~vl~V~D~~~~~~~~~-----~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~-~~~------------------- 66 (156)
T cd01859 12 ESDVVLEVLDARDPELTRS-----RKLERYVLELGKKLLIVLNKADLVPKEVLEKWK-SIK------------------- 66 (156)
T ss_pred hCCEEEEEeeCCCCcccCC-----HHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHH-HHH-------------------
Confidence 3699999999976544332 112223344579999999999997654322221 110
Q ss_pred hhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 277 LSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 277 ~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
.. .+.+++++||++|.|+.+|++.+.+.++.
T Consensus 67 ------~~-~~~~~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 67 ------ES-EGIPVVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred ------Hh-CCCcEEEEEccccccHHHHHHHHHHHHhh
Confidence 01 23568999999999999999999888764
No 499
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.58 E-value=2.7e-07 Score=84.89 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=76.0
Q ss_pred CCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc------ccccccccc----cchhhhH-------
Q 014354 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------VMTLPFAAN----IDIRDTI------- 124 (426)
Q Consensus 62 ~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~------v~~~~~~t~----i~~r~~~------- 124 (426)
.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.. +...++... ..+++.+
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~ 98 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIY 98 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhc
Confidence 44556678899999999999999999999998888777776554310 111111110 0111111
Q ss_pred ----HHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 125 ----RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 125 ----~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.+..+++.+++..- .-.....+|+|+++++.+++++..+++++|+|.|=
T Consensus 99 ~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~ 151 (195)
T PRK13541 99 NSAETLYAAIHYFKLHDL--LDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVE 151 (195)
T ss_pred ccHHHHHHHHHHcCCHhh--hccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 23455677776531 11223458999999999999999999999999993
No 500
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.58 E-value=4.8e-07 Score=90.65 Aligned_cols=150 Identities=19% Similarity=0.219 Sum_probs=84.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccc--cCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~--~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~ 144 (426)
.++.+|+++||.||||||.|-.|..... ....+++++..|.- .-++ ....-.|.++ +++. -+++.+
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtY----RIGA---~EQLk~Ya~i---m~vp--~~vv~~ 268 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTY----RIGA---VEQLKTYADI---MGVP--LEVVYS 268 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccc----hhhH---HHHHHHHHHH---hCCc--eEEecC
Confidence 3478999999999999999999999887 66788888876631 0011 0111112222 2211 122222
Q ss_pred cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
.+++..... ...+++++||||.|.... ....-..+.+.+......-+.+|++++..... +..+.
T Consensus 269 -------~~el~~ai~-~l~~~d~ILVDTaGrs~~--D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~d------lkei~ 332 (407)
T COG1419 269 -------PKELAEAIE-ALRDCDVILVDTAGRSQY--DKEKIEELKELIDVSHSIEVYLVLSATTKYED------LKEII 332 (407)
T ss_pred -------HHHHHHHHH-HhhcCCEEEEeCCCCCcc--CHHHHHHHHHHHhccccceEEEEEecCcchHH------HHHHH
Confidence 222222222 235689999999997553 22333445555544555667777887643322 12233
Q ss_pred HHHhhccCCeEEEEecCCCCC
Q 014354 225 SILYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~~ 245 (426)
......++ .=++++|.|-..
T Consensus 333 ~~f~~~~i-~~~I~TKlDET~ 352 (407)
T COG1419 333 KQFSLFPI-DGLIFTKLDETT 352 (407)
T ss_pred HHhccCCc-ceeEEEcccccC
Confidence 32222222 357899999665
Done!