Query 014354
Match_columns 426
No_of_seqs 379 out of 3352
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 10:03:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iev_A GTP-binding protein ERA 100.0 1.2E-29 4.3E-34 248.6 10.3 218 66-361 7-229 (308)
2 1wf3_A GTP-binding protein; GT 99.9 5.1E-28 1.7E-32 236.4 7.3 211 68-361 6-221 (301)
3 1ega_A Protein (GTP-binding pr 99.9 8.8E-27 3E-31 227.6 8.9 212 68-361 7-222 (301)
4 1yrb_A ATP(GTP)binding protein 99.9 2E-23 7E-28 198.4 16.1 243 66-316 11-259 (262)
5 2aka_B Dynamin-1; fusion prote 99.9 3E-21 1E-25 186.9 17.3 158 165-353 124-292 (299)
6 2www_A Methylmalonic aciduria 99.9 1E-20 3.6E-25 188.3 20.5 234 67-352 72-317 (349)
7 3p32_A Probable GTPase RV1496/ 99.9 2.2E-20 7.4E-25 186.4 22.2 232 67-348 77-318 (355)
8 2p67_A LAO/AO transport system 99.9 4E-20 1.4E-24 183.5 21.7 239 66-349 53-296 (341)
9 3pqc_A Probable GTP-binding pr 99.8 4E-19 1.4E-23 159.8 18.7 170 66-314 20-194 (195)
10 4dhe_A Probable GTP-binding pr 99.8 1.4E-19 4.9E-24 167.2 15.9 180 67-315 27-212 (223)
11 2x2e_A Dynamin-1; nitration, h 99.8 4.1E-20 1.4E-24 184.3 12.3 157 165-351 129-295 (353)
12 2qm8_A GTPase/ATPase; G protei 99.8 2.7E-18 9.2E-23 170.1 20.7 239 63-351 49-298 (337)
13 1jwy_B Dynamin A GTPase domain 99.8 1.7E-19 5.8E-24 176.1 11.9 157 165-352 130-297 (315)
14 1svi_A GTP-binding protein YSX 99.8 1.6E-18 5.4E-23 156.5 16.5 170 66-313 20-194 (195)
15 3zvr_A Dynamin-1; hydrolase, D 99.8 6.8E-19 2.3E-23 189.4 16.3 157 165-351 149-315 (772)
16 2xtp_A GTPase IMAP family memb 99.8 3E-19 1E-23 169.9 10.2 211 67-349 20-243 (260)
17 2wji_A Ferrous iron transport 99.8 5.4E-19 1.9E-23 156.2 10.9 160 69-312 3-163 (165)
18 3iby_A Ferrous iron transport 99.8 1.7E-19 5.7E-24 172.0 7.4 159 70-311 2-164 (256)
19 3b1v_A Ferrous iron uptake tra 99.8 9.6E-19 3.3E-23 168.2 11.8 160 69-313 3-163 (272)
20 3a1s_A Iron(II) transport prot 99.8 4.2E-19 1.4E-23 169.4 9.1 162 68-313 4-166 (258)
21 2lkc_A Translation initiation 99.8 2.6E-18 8.9E-23 152.4 13.5 167 66-314 5-171 (178)
22 2qu8_A Putative nucleolar GTP- 99.8 9.5E-18 3.3E-22 156.2 17.6 177 66-317 26-208 (228)
23 4dsu_A GTPase KRAS, isoform 2B 99.8 1E-18 3.5E-23 156.4 10.5 170 68-320 3-172 (189)
24 4bas_A ADP-ribosylation factor 99.8 2.4E-18 8.2E-23 155.6 12.9 168 65-315 13-190 (199)
25 2hjg_A GTP-binding protein ENG 99.8 1.7E-18 5.9E-23 177.3 12.8 179 67-321 173-356 (436)
26 1zj6_A ADP-ribosylation factor 99.8 5.1E-18 1.7E-22 152.6 13.9 167 67-320 14-184 (187)
27 4dcu_A GTP-binding protein ENG 99.8 7.2E-18 2.5E-22 173.6 17.0 180 67-322 193-377 (456)
28 1mky_A Probable GTP-binding pr 99.8 2.9E-18 1E-22 175.7 13.9 164 70-315 2-167 (439)
29 3i8s_A Ferrous iron transport 99.8 3.9E-19 1.3E-23 171.1 6.8 163 69-314 3-169 (274)
30 1upt_A ARL1, ADP-ribosylation 99.8 4.2E-18 1.4E-22 149.9 12.9 161 67-313 5-168 (171)
31 1c1y_A RAS-related protein RAP 99.8 2.1E-18 7.1E-23 151.0 10.8 163 69-312 3-165 (167)
32 3bwd_D RAC-like GTP-binding pr 99.7 7.4E-18 2.5E-22 150.0 12.7 172 67-312 6-179 (182)
33 2gj8_A MNME, tRNA modification 99.7 2E-18 6.9E-23 153.9 8.9 158 68-313 3-165 (172)
34 2a9k_A RAS-related protein RAL 99.7 4.2E-18 1.4E-22 151.9 10.6 166 67-315 16-182 (187)
35 1zd9_A ADP-ribosylation factor 99.7 1.4E-18 4.8E-23 156.6 7.6 164 65-313 18-184 (188)
36 1kao_A RAP2A; GTP-binding prot 99.7 2E-18 6.8E-23 150.8 8.2 163 69-313 3-165 (167)
37 1xzp_A Probable tRNA modificat 99.7 7.6E-18 2.6E-22 174.1 13.8 161 68-314 242-405 (482)
38 3q72_A GTP-binding protein RAD 99.7 3.8E-18 1.3E-22 149.6 9.9 158 69-314 2-164 (166)
39 1mh1_A RAC1; GTP-binding, GTPa 99.7 2.9E-18 9.9E-23 153.0 9.2 175 68-314 4-180 (186)
40 3gee_A MNME, tRNA modification 99.7 3E-18 1E-22 177.0 10.5 164 68-313 232-397 (476)
41 3k53_A Ferrous iron transport 99.7 3.4E-18 1.2E-22 163.9 10.2 164 68-314 2-166 (271)
42 2fn4_A P23, RAS-related protei 99.7 3.6E-18 1.2E-22 151.5 9.5 167 67-315 7-173 (181)
43 1vg8_A RAS-related protein RAB 99.7 9.8E-18 3.4E-22 152.7 12.6 167 67-315 6-176 (207)
44 2dyk_A GTP-binding protein; GT 99.7 8E-18 2.7E-22 146.6 11.5 157 70-312 2-160 (161)
45 2wjg_A FEOB, ferrous iron tran 99.7 2E-18 7E-23 154.8 7.9 166 68-316 6-171 (188)
46 4gzl_A RAS-related C3 botulinu 99.7 2.4E-18 8.2E-23 157.5 8.4 173 67-311 28-202 (204)
47 1wb1_A Translation elongation 99.7 2.3E-17 8E-22 170.9 16.7 116 165-313 72-188 (482)
48 2h17_A ADP-ribosylation factor 99.7 1.2E-17 4.2E-22 149.3 12.4 161 64-310 16-179 (181)
49 2h57_A ADP-ribosylation factor 99.7 7.2E-18 2.5E-22 152.0 10.8 165 64-313 16-186 (190)
50 2gco_A H9, RHO-related GTP-bin 99.7 1.4E-17 4.8E-22 151.8 12.9 174 67-312 23-198 (201)
51 1mky_A Probable GTP-binding pr 99.7 1.6E-17 5.4E-22 170.3 14.5 176 68-321 179-362 (439)
52 3kkq_A RAS-related protein M-R 99.7 1.4E-17 4.8E-22 148.7 12.2 167 66-314 15-182 (183)
53 3oes_A GTPase rhebl1; small GT 99.7 1.9E-18 6.4E-23 157.5 6.6 167 65-317 20-190 (201)
54 1r8s_A ADP-ribosylation factor 99.7 1.5E-17 5.2E-22 145.4 12.1 157 71-313 2-161 (164)
55 3sjy_A Translation initiation 99.7 4.4E-17 1.5E-21 165.1 17.3 116 166-314 75-192 (403)
56 2bov_A RAla, RAS-related prote 99.7 9.9E-18 3.4E-22 152.4 11.2 166 67-315 12-178 (206)
57 1ksh_A ARF-like protein 2; sma 99.7 7.9E-18 2.7E-22 150.9 10.4 163 67-315 16-181 (186)
58 2q3h_A RAS homolog gene family 99.7 7.7E-18 2.6E-22 153.0 10.5 178 66-315 17-196 (201)
59 3t5g_A GTP-binding protein RHE 99.7 2E-18 6.8E-23 153.9 6.3 167 68-316 5-171 (181)
60 2fv8_A H6, RHO-related GTP-bin 99.7 1.4E-17 4.9E-22 152.5 12.2 176 66-313 22-199 (207)
61 1f6b_A SAR1; gtpases, N-termin 99.7 1E-17 3.5E-22 152.7 11.1 169 67-311 23-196 (198)
62 1x3s_A RAS-related protein RAB 99.7 3.8E-18 1.3E-22 153.6 7.7 168 68-321 14-185 (195)
63 1moz_A ARL1, ADP-ribosylation 99.7 8.8E-18 3E-22 149.8 10.0 162 67-314 16-180 (183)
64 1fzq_A ADP-ribosylation factor 99.7 5.2E-18 1.8E-22 152.2 8.3 162 67-314 14-178 (181)
65 1u8z_A RAS-related protein RAL 99.7 1.1E-17 3.7E-22 146.2 10.1 163 68-313 3-166 (168)
66 2g6b_A RAS-related protein RAB 99.7 1.1E-17 3.7E-22 148.6 10.3 168 67-315 8-175 (180)
67 1m2o_B GTP-binding protein SAR 99.7 1.1E-17 3.6E-22 151.5 10.3 165 67-310 21-188 (190)
68 2atx_A Small GTP binding prote 99.7 1.3E-17 4.4E-22 150.6 10.9 174 68-313 17-192 (194)
69 1g16_A RAS-related protein SEC 99.7 2.9E-17 9.8E-22 144.1 12.7 163 69-314 3-165 (170)
70 3t1o_A Gliding protein MGLA; G 99.7 7.9E-17 2.7E-21 144.9 15.9 117 165-315 73-193 (198)
71 1ky3_A GTP-binding protein YPT 99.7 3.3E-17 1.1E-21 145.4 13.2 170 67-315 6-179 (182)
72 2e87_A Hypothetical protein PH 99.7 1.1E-16 3.6E-21 159.7 18.3 169 67-317 165-339 (357)
73 2ce2_X GTPase HRAS; signaling 99.7 1.2E-17 4.2E-22 145.3 10.1 157 70-313 4-164 (166)
74 3clv_A RAB5 protein, putative; 99.7 3.3E-17 1.1E-21 147.7 13.2 111 166-314 93-204 (208)
75 3bc1_A RAS-related protein RAB 99.7 8.6E-17 2.9E-21 144.1 15.8 113 166-315 70-186 (195)
76 2a5j_A RAS-related protein RAB 99.7 3.3E-17 1.1E-21 147.8 13.1 165 66-315 18-185 (191)
77 2hjg_A GTP-binding protein ENG 99.7 1.1E-17 3.9E-22 171.1 11.2 158 70-314 4-165 (436)
78 2nzj_A GTP-binding protein REM 99.7 1.1E-17 3.7E-22 147.8 9.5 164 68-315 3-170 (175)
79 1lnz_A SPO0B-associated GTP-bi 99.7 5.9E-18 2E-22 167.7 8.7 167 70-317 159-333 (342)
80 3tkl_A RAS-related protein RAB 99.7 3.1E-17 1.1E-21 147.8 12.6 167 67-315 14-180 (196)
81 2gf9_A RAS-related protein RAB 99.7 2.6E-17 9E-22 148.1 12.1 164 67-315 20-186 (189)
82 3q85_A GTP-binding protein REM 99.7 1.6E-17 5.6E-22 146.0 10.4 114 165-314 50-167 (169)
83 1g7s_A Translation initiation 99.7 4.1E-17 1.4E-21 172.6 15.3 132 166-315 70-219 (594)
84 1z08_A RAS-related protein RAB 99.7 1E-17 3.5E-22 147.2 8.9 164 68-313 5-168 (170)
85 1wxq_A GTP-binding protein; st 99.7 4.3E-19 1.5E-23 179.4 -0.0 87 229-344 212-299 (397)
86 2x77_A ADP-ribosylation factor 99.7 1.8E-17 6.2E-22 149.0 10.6 162 67-314 20-184 (189)
87 1wms_A RAB-9, RAB9, RAS-relate 99.7 4E-17 1.4E-21 144.5 12.6 165 68-314 6-174 (177)
88 3reg_A RHO-like small GTPase; 99.7 1.2E-17 3.9E-22 151.1 9.3 166 67-314 21-188 (194)
89 2j1l_A RHO-related GTP-binding 99.7 1.2E-17 4E-22 154.1 9.3 176 68-315 33-210 (214)
90 2il1_A RAB12; G-protein, GDP, 99.7 2.2E-17 7.7E-22 149.3 10.5 167 66-313 23-189 (192)
91 2efe_B Small GTP-binding prote 99.7 5.8E-17 2E-21 144.0 13.0 162 68-314 11-175 (181)
92 1z2a_A RAS-related protein RAB 99.7 5.4E-17 1.9E-21 142.1 12.6 161 68-313 4-166 (168)
93 3con_A GTPase NRAS; structural 99.7 2.7E-17 9.1E-22 147.9 10.7 161 68-315 20-184 (190)
94 3cph_A RAS-related protein SEC 99.7 6.2E-17 2.1E-21 148.0 13.3 166 67-315 18-183 (213)
95 3tw8_B RAS-related protein RAB 99.7 4.5E-17 1.5E-21 144.4 12.0 164 68-316 8-173 (181)
96 2j0v_A RAC-like GTP-binding pr 99.7 3.2E-17 1.1E-21 150.3 11.0 167 67-315 7-181 (212)
97 3dz8_A RAS-related protein RAB 99.7 8.7E-17 3E-21 145.1 13.7 164 67-315 21-187 (191)
98 3ihw_A Centg3; RAS, centaurin, 99.7 2.8E-17 9.6E-22 148.0 10.2 160 66-314 17-180 (184)
99 1z0f_A RAB14, member RAS oncog 99.7 5.9E-17 2E-21 143.4 12.0 165 67-313 13-177 (179)
100 2b6h_A ADP-ribosylation factor 99.7 3.2E-17 1.1E-21 148.6 10.5 161 66-312 26-189 (192)
101 2fh5_B SR-beta, signal recogni 99.7 6.2E-17 2.1E-21 148.6 12.4 185 68-311 6-213 (214)
102 3geh_A MNME, tRNA modification 99.7 1.7E-17 5.7E-22 170.8 9.5 161 68-315 223-385 (462)
103 2iwr_A Centaurin gamma 1; ANK 99.7 7.2E-17 2.5E-21 143.3 12.5 160 68-315 6-170 (178)
104 3cbq_A GTP-binding protein REM 99.7 2.6E-17 8.9E-22 149.7 9.8 166 65-314 19-188 (195)
105 2f7s_A C25KG, RAS-related prot 99.7 1E-16 3.4E-21 147.5 13.5 174 67-315 23-200 (217)
106 2erx_A GTP-binding protein DI- 99.7 5.4E-17 1.8E-21 142.5 11.1 158 69-312 3-165 (172)
107 3izy_P Translation initiation 99.7 6.9E-18 2.4E-22 176.0 6.2 165 68-313 3-167 (537)
108 4djt_A GTP-binding nuclear pro 99.7 1.1E-17 3.7E-22 154.1 6.8 169 68-317 10-178 (218)
109 2bcg_Y Protein YP2, GTP-bindin 99.7 9.5E-17 3.2E-21 146.4 13.0 166 68-315 7-172 (206)
110 2cxx_A Probable GTP-binding pr 99.7 2.5E-16 8.6E-21 141.0 15.4 170 70-314 2-184 (190)
111 2oil_A CATX-8, RAS-related pro 99.7 1.1E-16 3.7E-21 144.4 13.0 163 67-314 23-188 (193)
112 2gf0_A GTP-binding protein DI- 99.7 6.4E-17 2.2E-21 146.1 11.5 164 68-315 7-172 (199)
113 2fg5_A RAB-22B, RAS-related pr 99.7 2.4E-17 8.1E-22 149.1 8.5 165 67-316 21-188 (192)
114 2wsm_A Hydrogenase expression/ 99.7 2.3E-17 8E-22 152.3 8.6 180 68-314 29-214 (221)
115 3q3j_B RHO-related GTP-binding 99.7 5.6E-17 1.9E-21 149.7 11.1 180 66-317 24-206 (214)
116 1zbd_A Rabphilin-3A; G protein 99.7 7.2E-17 2.5E-21 146.8 11.7 163 68-315 7-172 (203)
117 1z06_A RAS-related protein RAB 99.7 4.5E-17 1.6E-21 146.5 10.3 168 66-313 17-187 (189)
118 3llu_A RAS-related GTP-binding 99.7 2.5E-16 8.4E-21 142.9 15.2 178 64-311 15-194 (196)
119 2hup_A RAS-related protein RAB 99.7 9.5E-17 3.2E-21 146.5 12.3 165 67-315 27-194 (201)
120 2atv_A RERG, RAS-like estrogen 99.7 1.1E-16 3.9E-21 144.9 12.6 165 67-315 26-192 (196)
121 1z0j_A RAB-22, RAS-related pro 99.7 1E-16 3.6E-21 140.5 11.9 163 68-312 5-167 (170)
122 4dcu_A GTP-binding protein ENG 99.7 3.1E-17 1E-21 168.9 9.8 160 67-313 21-184 (456)
123 3j2k_7 ERF3, eukaryotic polype 99.7 1.5E-16 5.3E-21 162.9 15.0 118 164-306 93-217 (439)
124 3lxw_A GTPase IMAP family memb 99.7 1.6E-16 5.4E-21 150.5 13.7 183 67-328 19-223 (247)
125 2bme_A RAB4A, RAS-related prot 99.7 9.9E-17 3.4E-21 143.3 11.6 167 68-316 9-175 (186)
126 2qtf_A Protein HFLX, GTP-bindi 99.7 2.3E-16 7.9E-21 157.6 15.4 178 69-319 179-359 (364)
127 2p5s_A RAS and EF-hand domain 99.7 1.3E-16 4.4E-21 145.0 12.2 172 66-313 25-196 (199)
128 4dkx_A RAS-related protein RAB 99.7 2.6E-16 8.8E-21 146.2 14.2 166 68-315 12-177 (216)
129 2y8e_A RAB-protein 6, GH09086P 99.7 6.7E-17 2.3E-21 143.0 9.6 163 69-313 14-176 (179)
130 3gj0_A GTP-binding nuclear pro 99.7 1.6E-18 5.5E-23 160.3 -1.1 115 165-318 63-179 (221)
131 1ek0_A Protein (GTP-binding pr 99.7 1E-16 3.5E-21 140.4 10.5 161 69-312 3-167 (170)
132 3o47_A ADP-ribosylation factor 99.7 7.2E-17 2.5E-21 159.3 10.6 162 66-313 162-326 (329)
133 2hxs_A RAB-26, RAS-related pro 99.7 4.1E-16 1.4E-20 138.1 14.4 163 68-314 5-173 (178)
134 1r2q_A RAS-related protein RAB 99.7 1.5E-16 5E-21 139.4 11.2 160 68-312 5-167 (170)
135 1kk1_A EIF2gamma; initiation o 99.7 2.3E-16 8E-21 160.1 14.2 115 166-314 83-200 (410)
136 2o52_A RAS-related protein RAB 99.7 1.3E-16 4.5E-21 145.3 11.1 167 67-315 23-189 (200)
137 1s0u_A EIF-2-gamma, translatio 99.7 1.3E-16 4.3E-21 162.0 11.8 114 166-313 81-197 (408)
138 2ew1_A RAS-related protein RAB 99.7 1.5E-16 5.3E-21 145.6 11.2 165 68-314 25-189 (201)
139 3t5d_A Septin-7; GTP-binding p 99.7 1.2E-16 4E-21 153.5 10.8 119 166-313 65-203 (274)
140 2fu5_C RAS-related protein RAB 99.7 9.2E-17 3.2E-21 143.3 9.0 163 68-315 7-172 (183)
141 3th5_A RAS-related C3 botulinu 99.5 4E-18 1.4E-22 155.5 0.0 173 67-311 28-202 (204)
142 2elf_A Protein translation elo 99.7 3.7E-16 1.3E-20 156.5 14.3 116 164-314 58-180 (370)
143 1m7b_A RND3/RHOE small GTP-bin 99.7 7E-17 2.4E-21 144.8 8.0 174 68-313 6-182 (184)
144 1zo1_I IF2, translation initia 99.7 6.2E-17 2.1E-21 167.5 8.1 162 67-310 2-163 (501)
145 3p26_A Elongation factor 1 alp 99.7 5.5E-16 1.9E-20 160.7 14.7 115 164-304 109-228 (483)
146 3c5c_A RAS-like protein 12; GD 99.7 2.4E-16 8.1E-21 142.1 10.3 161 66-313 18-185 (187)
147 2yc2_C IFT27, small RAB-relate 99.7 1.1E-16 3.7E-21 145.5 7.6 114 165-315 72-193 (208)
148 3lvq_E ARF-GAP with SH3 domain 99.7 1.1E-16 3.7E-21 166.4 8.5 166 67-318 320-488 (497)
149 2c78_A Elongation factor TU-A; 99.7 4.4E-16 1.5E-20 157.8 12.7 106 164-301 73-181 (405)
150 1gwn_A RHO-related GTP-binding 99.7 1.5E-16 5.2E-21 146.0 8.3 175 67-313 26-203 (205)
151 2g3y_A GTP-binding protein GEM 99.7 4.1E-16 1.4E-20 144.2 11.1 164 67-313 35-202 (211)
152 3cpj_B GTP-binding protein YPT 99.6 2.9E-16 9.8E-21 145.5 10.0 162 68-314 12-176 (223)
153 3tr5_A RF-3, peptide chain rel 99.6 3.4E-16 1.2E-20 163.6 11.7 71 164-247 80-150 (528)
154 1d2e_A Elongation factor TU (E 99.6 7.5E-16 2.6E-20 155.8 13.7 118 164-313 64-194 (397)
155 4a9a_A Ribosome-interacting GT 99.6 5E-16 1.7E-20 155.2 11.0 159 33-244 30-195 (376)
156 1zun_B Sulfate adenylate trans 99.6 7.7E-16 2.6E-20 157.5 12.7 111 165-306 103-216 (434)
157 2wkq_A NPH1-1, RAS-related C3 99.6 3.2E-16 1.1E-20 153.2 9.2 175 67-313 153-329 (332)
158 3izq_1 HBS1P, elongation facto 99.6 1.2E-15 4.2E-20 162.0 13.5 110 164-304 243-362 (611)
159 3mca_A HBS1, elongation factor 99.6 1.7E-16 5.8E-21 168.2 6.5 108 164-302 253-371 (592)
160 2ywe_A GTP-binding protein LEP 99.6 1.4E-15 4.8E-20 160.6 12.7 112 166-314 73-184 (600)
161 1nrj_B SR-beta, signal recogni 99.6 7.4E-15 2.5E-19 135.0 15.3 184 67-311 10-217 (218)
162 1pui_A ENGB, probable GTP-bind 99.6 9.6E-15 3.3E-19 133.3 15.5 175 64-315 21-200 (210)
163 2j69_A Bacterial dynamin-like 99.6 4.3E-14 1.5E-18 152.4 23.0 123 166-314 174-325 (695)
164 2cjw_A GTP-binding protein GEM 99.6 3.1E-15 1E-19 135.6 11.8 114 166-315 56-173 (192)
165 3cb4_D GTP-binding protein LEP 99.6 2.2E-15 7.6E-20 159.3 12.4 113 165-314 70-182 (599)
166 2qpt_A EH domain-containing pr 99.6 3.5E-16 1.2E-20 164.3 6.3 163 67-254 63-241 (550)
167 3qq5_A Small GTP-binding prote 99.6 4.3E-16 1.5E-20 158.4 6.6 165 67-315 32-197 (423)
168 3r7w_A Gtpase1, GTP-binding pr 99.6 5.3E-15 1.8E-19 144.5 13.5 169 68-312 2-179 (307)
169 3l0i_B RAS-related protein RAB 99.6 3.6E-17 1.2E-21 148.7 -2.3 161 67-312 31-194 (199)
170 3vqt_A RF-3, peptide chain rel 99.6 3.6E-15 1.2E-19 156.6 12.4 139 68-247 30-168 (548)
171 3j25_A Tetracycline resistance 99.6 2.4E-15 8.2E-20 160.8 10.7 134 69-247 2-135 (638)
172 2zej_A Dardarin, leucine-rich 99.6 4.4E-15 1.5E-19 133.3 10.6 118 165-314 55-178 (184)
173 2h5e_A Peptide chain release f 99.6 1.1E-14 3.8E-19 152.2 15.2 139 68-247 12-150 (529)
174 3dpu_A RAB family protein; roc 99.6 5.6E-15 1.9E-19 154.9 12.6 171 67-317 39-211 (535)
175 1jny_A EF-1-alpha, elongation 99.6 1.1E-14 3.9E-19 148.9 14.5 110 164-305 82-204 (435)
176 3c5h_A Glucocorticoid receptor 99.6 1.9E-14 6.6E-19 136.6 14.9 88 198-312 163-253 (255)
177 1f60_A Elongation factor EEF1A 99.6 6.5E-15 2.2E-19 151.6 11.7 114 164-304 83-202 (458)
178 3lxx_A GTPase IMAP family memb 99.6 4E-14 1.4E-18 132.7 15.6 179 67-314 27-214 (239)
179 2hf9_A Probable hydrogenase ni 99.6 1.3E-14 4.6E-19 134.2 12.0 182 68-314 37-224 (226)
180 3avx_A Elongation factor TS, e 99.6 1.9E-14 6.5E-19 159.4 15.1 118 164-313 357-485 (1289)
181 2xex_A Elongation factor G; GT 99.6 3.3E-14 1.1E-18 153.3 16.3 70 164-246 73-142 (693)
182 1udx_A The GTP-binding protein 99.6 3.6E-14 1.2E-18 143.9 15.3 170 67-316 155-327 (416)
183 1r5b_A Eukaryotic peptide chai 99.6 4.7E-15 1.6E-19 153.0 8.5 111 165-305 120-243 (467)
184 3t34_A Dynamin-related protein 99.5 4.8E-14 1.6E-18 140.5 15.3 159 165-351 135-301 (360)
185 1dar_A EF-G, elongation factor 99.5 3.1E-14 1E-18 153.5 14.6 71 164-247 75-145 (691)
186 2dy1_A Elongation factor G; tr 99.5 2.5E-14 8.5E-19 153.6 13.0 133 67-244 7-139 (665)
187 2f9l_A RAB11B, member RAS onco 99.5 5.5E-14 1.9E-18 127.6 12.6 162 69-315 5-169 (199)
188 2rdo_7 EF-G, elongation factor 99.5 1.4E-13 4.7E-18 148.7 17.2 70 165-247 81-150 (704)
189 2ged_A SR-beta, signal recogni 99.5 3E-13 1E-17 121.5 14.0 130 67-256 46-181 (193)
190 4fn5_A EF-G 1, elongation fact 99.5 1.9E-13 6.6E-18 147.8 14.7 70 165-247 84-153 (709)
191 2qag_A Septin-2, protein NEDD5 99.5 7.4E-14 2.5E-18 139.4 9.5 119 166-314 95-233 (361)
192 1oix_A RAS-related protein RAB 99.5 2.5E-13 8.7E-18 122.7 11.0 160 68-312 28-190 (191)
193 3def_A T7I23.11 protein; chlor 99.4 1.5E-12 5E-17 124.0 15.6 128 68-246 35-166 (262)
194 1h65_A Chloroplast outer envel 99.4 2.3E-12 7.9E-17 123.1 13.8 126 68-247 38-170 (270)
195 3r7w_B Gtpase2, GTP-binding pr 99.4 8.1E-13 2.8E-17 129.4 10.6 124 166-313 46-173 (331)
196 2qnr_A Septin-2, protein NEDD5 99.4 1.1E-12 3.6E-17 127.8 11.3 87 198-314 127-214 (301)
197 2j37_W Signal recognition part 99.4 1.4E-12 4.6E-17 135.2 12.6 209 67-311 99-310 (504)
198 1tq4_A IIGP1, interferon-induc 99.4 7.6E-12 2.6E-16 126.6 15.9 199 68-339 68-284 (413)
199 2qag_C Septin-7; cell cycle, c 99.4 3.8E-12 1.3E-16 129.1 13.5 85 198-311 139-224 (418)
200 2v3c_C SRP54, signal recogniti 99.3 2.4E-13 8.4E-18 138.5 2.6 240 68-352 98-353 (432)
201 1jal_A YCHF protein; nucleotid 99.3 1.3E-11 4.6E-16 122.6 14.5 103 70-209 3-108 (363)
202 2dby_A GTP-binding protein; GD 99.3 1.4E-11 4.7E-16 123.0 13.8 103 70-209 2-111 (368)
203 3dm5_A SRP54, signal recogniti 99.3 4E-11 1.4E-15 121.9 16.2 156 68-247 99-255 (443)
204 3kl4_A SRP54, signal recogniti 99.2 1.3E-10 4.4E-15 118.1 16.1 157 68-246 96-253 (433)
205 1n0u_A EF-2, elongation factor 99.2 1.2E-11 4.2E-16 135.9 9.0 67 165-244 97-163 (842)
206 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 7.4E-10 2.5E-14 111.2 15.7 109 66-209 17-127 (392)
207 3sop_A Neuronal-specific septi 99.1 2.9E-10 1E-14 108.8 12.2 143 70-257 3-166 (270)
208 3e70_C DPA, signal recognition 99.1 2.9E-09 9.9E-14 104.6 17.3 156 67-245 127-282 (328)
209 2xxa_A Signal recognition part 99.1 4.6E-09 1.6E-13 107.0 18.5 155 67-246 98-255 (433)
210 1nij_A Hypothetical protein YJ 99.0 3.1E-09 1.1E-13 104.0 15.3 156 68-246 3-165 (318)
211 1j8m_F SRP54, signal recogniti 99.0 7.4E-09 2.5E-13 100.4 16.7 154 69-246 98-254 (297)
212 2ohf_A Protein OLA1, GTP-bindi 99.0 1E-10 3.5E-15 117.4 3.6 106 67-209 20-128 (396)
213 3ec1_A YQEH GTPase; atnos1, at 99.0 2.7E-11 9.3E-16 121.1 -0.7 132 69-252 162-295 (369)
214 3gfo_A Cobalt import ATP-bindi 99.0 1.1E-09 3.8E-14 105.0 9.8 114 59-174 24-170 (275)
215 3tui_C Methionine import ATP-b 99.0 1.9E-09 6.6E-14 107.0 11.7 115 59-175 44-191 (366)
216 3fvq_A Fe(3+) IONS import ATP- 99.0 1.9E-09 6.6E-14 106.9 11.2 114 59-174 20-165 (359)
217 2yhs_A FTSY, cell division pro 99.0 3.5E-09 1.2E-13 108.7 13.4 160 61-245 285-452 (503)
218 2onk_A Molybdate/tungstate ABC 99.0 3.5E-09 1.2E-13 99.5 12.1 112 60-174 16-153 (240)
219 3tif_A Uncharacterized ABC tra 99.0 3.1E-09 1E-13 99.6 11.3 116 59-175 21-173 (235)
220 1vma_A Cell division protein F 99.0 1.6E-08 5.4E-13 98.4 16.6 155 66-246 101-264 (306)
221 4g1u_C Hemin import ATP-bindin 99.0 2.7E-09 9.2E-14 101.9 10.9 115 59-175 27-175 (266)
222 3h2y_A GTPase family protein; 98.9 1.8E-10 6E-15 115.2 2.4 136 69-255 160-297 (368)
223 2qag_B Septin-6, protein NEDD5 98.9 7.3E-10 2.5E-14 112.2 6.9 52 200-257 151-202 (427)
224 2pcj_A ABC transporter, lipopr 98.9 3E-09 1E-13 98.9 10.5 115 59-175 20-168 (224)
225 1sgw_A Putative ABC transporte 98.9 2.2E-09 7.4E-14 99.2 8.0 114 59-175 25-161 (214)
226 1vpl_A ABC transporter, ATP-bi 98.9 6.9E-09 2.3E-13 98.4 11.4 115 59-175 31-174 (256)
227 2olj_A Amino acid ABC transpor 98.9 6.7E-09 2.3E-13 98.9 11.3 114 59-174 40-186 (263)
228 2nq2_C Hypothetical ABC transp 98.9 8.4E-09 2.9E-13 97.7 11.6 115 59-175 21-156 (253)
229 1b0u_A Histidine permease; ABC 98.9 5.3E-09 1.8E-13 99.6 10.3 115 59-175 22-181 (262)
230 3rlf_A Maltose/maltodextrin im 98.9 5.9E-09 2E-13 104.2 10.9 115 59-175 19-161 (381)
231 2it1_A 362AA long hypothetical 98.9 1E-08 3.6E-13 101.9 12.5 114 59-174 19-160 (362)
232 2yyz_A Sugar ABC transporter, 98.9 9.8E-09 3.4E-13 101.9 11.8 114 59-174 19-160 (359)
233 2ihy_A ABC transporter, ATP-bi 98.9 6.4E-09 2.2E-13 99.9 10.0 114 59-174 37-188 (279)
234 1g6h_A High-affinity branched- 98.9 1.3E-08 4.5E-13 96.5 11.9 115 59-175 23-181 (257)
235 1z47_A CYSA, putative ABC-tran 98.9 9.1E-09 3.1E-13 102.0 10.9 114 59-174 31-172 (355)
236 3d31_A Sulfate/molybdate ABC t 98.8 1.2E-08 4E-13 101.0 11.5 114 59-174 16-154 (348)
237 1v43_A Sugar-binding transport 98.8 1.1E-08 3.7E-13 102.1 11.2 114 59-174 27-168 (372)
238 2pjz_A Hypothetical protein ST 98.8 1.9E-08 6.5E-13 95.7 12.3 113 59-175 21-156 (263)
239 1zu4_A FTSY; GTPase, signal re 98.8 4.6E-08 1.6E-12 95.7 15.0 164 62-246 98-269 (320)
240 1ji0_A ABC transporter; ATP bi 98.8 1.1E-08 3.9E-13 96.0 10.2 115 59-175 22-167 (240)
241 1oxx_K GLCV, glucose, ABC tran 98.8 1.3E-08 4.5E-13 100.9 10.6 114 59-174 21-167 (353)
242 2yz2_A Putative ABC transporte 98.8 1.6E-08 5.5E-13 96.4 10.8 115 59-175 23-166 (266)
243 1g29_1 MALK, maltose transport 98.8 1.9E-08 6.3E-13 100.5 11.2 114 59-174 19-166 (372)
244 2ffh_A Protein (FFH); SRP54, s 98.8 8.6E-08 2.9E-12 97.1 16.0 153 68-246 97-252 (425)
245 2qi9_C Vitamin B12 import ATP- 98.8 1.4E-08 4.8E-13 95.9 9.2 113 60-175 17-161 (249)
246 2cbz_A Multidrug resistance-as 98.8 5.8E-09 2E-13 97.8 6.3 117 59-175 21-155 (237)
247 1mv5_A LMRA, multidrug resista 98.8 1.7E-08 5.9E-13 94.8 9.5 116 59-174 18-166 (243)
248 1ls1_A Signal recognition part 98.8 1.4E-07 4.9E-12 91.1 16.1 155 68-246 97-252 (295)
249 3nh6_A ATP-binding cassette SU 98.8 7.1E-09 2.4E-13 100.8 6.7 117 59-175 70-218 (306)
250 1rj9_A FTSY, signal recognitio 98.7 2E-07 6.9E-12 90.5 16.3 155 68-246 101-262 (304)
251 2pze_A Cystic fibrosis transme 98.7 1E-08 3.4E-13 95.6 6.8 115 59-175 24-158 (229)
252 2ixe_A Antigen peptide transpo 98.7 2.9E-08 9.8E-13 94.9 9.3 115 59-175 35-184 (271)
253 2zu0_C Probable ATP-dependent 98.7 3.1E-08 1E-12 94.5 9.1 115 59-175 36-192 (267)
254 2ff7_A Alpha-hemolysin translo 98.7 2.1E-08 7.2E-13 94.6 7.8 117 59-175 25-173 (247)
255 2px0_A Flagellar biosynthesis 98.7 8E-08 2.7E-12 93.0 11.8 151 67-246 103-254 (296)
256 2d2e_A SUFC protein; ABC-ATPas 98.7 2.3E-08 7.9E-13 94.4 7.6 114 59-174 19-170 (250)
257 3b9q_A Chloroplast SRP recepto 98.7 5.8E-07 2E-11 87.1 17.1 160 62-245 93-260 (302)
258 2ghi_A Transport protein; mult 98.6 5.4E-08 1.8E-12 92.4 8.3 116 59-175 36-183 (260)
259 3szr_A Interferon-induced GTP- 98.6 6E-08 2.1E-12 103.0 8.9 79 165-247 146-230 (608)
260 2og2_A Putative signal recogni 98.6 9.7E-07 3.3E-11 87.5 16.8 161 62-246 150-318 (359)
261 3ozx_A RNAse L inhibitor; ATP 98.6 8.8E-08 3E-12 100.2 9.7 106 66-175 291-413 (538)
262 3bk7_A ABC transporter ATP-bin 98.6 1.5E-07 5.2E-12 99.7 11.0 106 67-175 380-499 (607)
263 2bbs_A Cystic fibrosis transme 98.6 4.6E-08 1.6E-12 94.4 6.0 115 59-175 54-187 (290)
264 3b5x_A Lipid A export ATP-bind 98.6 3.3E-07 1.1E-11 96.8 13.0 117 59-175 359-508 (582)
265 3gd7_A Fusion complex of cysti 98.5 4.3E-08 1.5E-12 98.4 4.7 115 59-174 37-182 (390)
266 3j16_B RLI1P; ribosome recycli 98.5 5.9E-07 2E-11 95.1 12.8 103 70-175 379-495 (608)
267 3qf4_A ABC transporter, ATP-bi 98.5 3.3E-07 1.1E-11 96.9 10.9 117 59-175 359-507 (587)
268 4a82_A Cystic fibrosis transme 98.5 2.6E-07 8.9E-12 97.5 9.9 117 59-175 357-505 (578)
269 3ozx_A RNAse L inhibitor; ATP 98.5 3.6E-07 1.2E-11 95.6 10.2 108 66-175 22-166 (538)
270 4dzz_A Plasmid partitioning pr 98.5 8.5E-07 2.9E-11 79.9 11.4 136 71-245 3-144 (206)
271 1yqt_A RNAse L inhibitor; ATP- 98.5 2.6E-07 9E-12 96.6 8.6 106 67-175 310-429 (538)
272 3qf4_B Uncharacterized ABC tra 98.4 3E-07 1E-11 97.4 8.8 116 59-175 371-519 (598)
273 1yqt_A RNAse L inhibitor; ATP- 98.4 1.5E-06 5E-11 90.9 13.5 113 60-175 39-186 (538)
274 2yl4_A ATP-binding cassette SU 98.4 3.3E-07 1.1E-11 97.1 8.1 117 59-175 360-511 (595)
275 3b60_A Lipid A export ATP-bind 98.4 2.9E-07 9.9E-12 97.2 7.5 117 59-175 359-508 (582)
276 3bk7_A ABC transporter ATP-bin 98.4 1.3E-06 4.3E-11 92.6 12.1 112 61-175 110-256 (607)
277 1u0l_A Probable GTPase ENGC; p 98.4 1E-06 3.5E-11 85.3 10.4 104 167-309 64-168 (301)
278 1puj_A YLQF, conserved hypothe 98.4 1.3E-07 4.5E-12 90.9 4.1 29 67-95 118-146 (282)
279 4f4c_A Multidrug resistance pr 98.4 7.5E-07 2.6E-11 102.4 10.1 142 59-205 1095-1272(1321)
280 1f5n_A Interferon-induced guan 98.4 2.9E-07 9.8E-12 96.9 6.0 26 68-93 37-62 (592)
281 4gp7_A Metallophosphoesterase; 98.4 3.1E-07 1.1E-11 81.3 5.4 99 66-174 6-110 (171)
282 3j16_B RLI1P; ribosome recycli 98.3 8.7E-07 3E-11 93.8 7.8 108 66-175 100-249 (608)
283 1puj_A YLQF, conserved hypothe 98.3 4.2E-06 1.4E-10 80.2 11.4 85 196-314 22-106 (282)
284 3cio_A ETK, tyrosine-protein k 98.2 1.1E-05 3.7E-10 78.0 13.5 161 68-245 103-280 (299)
285 1cip_A Protein (guanine nucleo 98.2 1.3E-06 4.4E-11 86.5 7.0 138 165-314 192-344 (353)
286 3end_A Light-independent proto 98.2 1.2E-05 4E-10 77.6 13.1 43 66-108 38-80 (307)
287 3la6_A Tyrosine-protein kinase 98.2 1E-05 3.5E-10 77.7 12.4 160 68-246 91-269 (286)
288 2npi_A Protein CLP1; CLP1-PCF1 98.2 3.5E-07 1.2E-11 93.8 2.0 122 36-176 119-270 (460)
289 3bfv_A CAPA1, CAPB2, membrane 98.2 1.9E-05 6.6E-10 75.1 13.8 161 68-245 81-258 (271)
290 4f4c_A Multidrug resistance pr 98.2 3.9E-06 1.3E-10 96.5 10.5 117 59-175 434-582 (1321)
291 3kjh_A CO dehydrogenase/acetyl 98.2 1E-05 3.5E-10 74.8 11.6 38 71-108 2-39 (254)
292 3cnl_A YLQF, putative uncharac 98.2 9.9E-07 3.4E-11 83.8 4.6 25 70-94 100-124 (262)
293 3g5u_A MCG1178, multidrug resi 98.2 3E-06 1E-10 97.1 8.9 116 59-175 1049-1199(1284)
294 3g5u_A MCG1178, multidrug resi 98.1 2.9E-06 9.8E-11 97.3 8.2 117 59-175 406-554 (1284)
295 2yv5_A YJEQ protein; hydrolase 98.1 7.2E-06 2.5E-10 79.4 9.8 84 196-309 78-164 (302)
296 1zcb_A G alpha I/13; GTP-bindi 98.1 1.1E-06 3.7E-11 87.4 3.4 135 165-314 200-353 (362)
297 3b85_A Phosphate starvation-in 98.1 1.4E-06 4.9E-11 79.8 3.3 93 68-177 21-134 (208)
298 2xtz_A Guanine nucleotide-bind 98.1 5.6E-06 1.9E-10 81.9 7.3 72 165-245 182-264 (354)
299 1ye8_A Protein THEP1, hypothet 98.0 7.4E-06 2.5E-10 73.0 7.3 30 147-176 76-110 (178)
300 2iw3_A Elongation factor 3A; a 98.0 4.7E-06 1.6E-10 92.1 7.1 112 62-175 454-576 (986)
301 2iw3_A Elongation factor 3A; a 98.0 2.1E-06 7.1E-11 94.9 4.2 44 60-103 690-733 (986)
302 3q9l_A Septum site-determining 98.0 3.2E-05 1.1E-09 72.2 11.5 39 70-108 3-42 (260)
303 3ea0_A ATPase, para family; al 98.0 8.2E-05 2.8E-09 68.7 14.1 164 68-246 3-187 (245)
304 3aez_A Pantothenate kinase; tr 98.0 8.4E-07 2.9E-11 86.4 0.2 107 66-177 87-206 (312)
305 3k9g_A PF-32 protein; ssgcid, 98.0 0.00016 5.4E-09 68.0 15.2 42 66-108 24-66 (267)
306 2eyu_A Twitching motility prot 97.9 1.3E-05 4.4E-10 75.9 7.4 85 67-175 23-108 (261)
307 2ph1_A Nucleotide-binding prot 97.9 7.1E-05 2.4E-09 70.4 12.3 40 70-109 19-59 (262)
308 2pt7_A CAG-ALFA; ATPase, prote 97.9 4.2E-05 1.4E-09 75.0 10.7 82 68-176 170-251 (330)
309 3q5d_A Atlastin-1; G protein, 97.9 1.7E-05 5.7E-10 80.8 7.9 26 67-92 65-90 (447)
310 3cwq_A Para family chromosome 97.9 9.3E-05 3.2E-09 67.4 12.1 129 72-245 3-134 (209)
311 3cnl_A YLQF, putative uncharac 97.9 1.6E-05 5.4E-10 75.4 6.9 79 196-311 20-98 (262)
312 3ux8_A Excinuclease ABC, A sub 97.9 6.3E-05 2.2E-09 80.6 12.1 45 130-175 186-232 (670)
313 2oze_A ORF delta'; para, walke 97.9 7E-05 2.4E-09 71.6 11.1 39 71-109 36-77 (298)
314 3ux8_A Excinuclease ABC, A sub 97.8 6.6E-05 2.3E-09 80.5 11.5 47 127-174 524-573 (670)
315 1cp2_A CP2, nitrogenase iron p 97.8 0.00016 5.3E-09 68.0 12.7 40 70-109 2-41 (269)
316 1wcv_1 SOJ, segregation protei 97.8 9.2E-05 3.1E-09 69.4 10.9 41 68-108 5-46 (257)
317 1hyq_A MIND, cell division inh 97.8 0.0002 7E-09 66.9 13.2 38 71-108 4-42 (263)
318 3ohm_A Guanine nucleotide-bind 97.8 2.1E-05 7.1E-10 76.9 6.4 135 165-314 166-318 (327)
319 1azs_C GS-alpha; complex (lyas 97.8 1.6E-05 5.5E-10 79.9 5.6 71 165-244 216-297 (402)
320 3jvv_A Twitching mobility prot 97.8 2.9E-05 9.8E-10 76.9 7.2 85 67-175 121-206 (356)
321 1g3q_A MIND ATPase, cell divis 97.8 0.00025 8.6E-09 65.1 13.1 39 70-108 3-42 (237)
322 4fid_A G protein alpha subunit 97.7 5.4E-05 1.8E-09 74.4 7.6 27 288-314 302-328 (340)
323 3ec1_A YQEH GTPase; atnos1, at 97.7 8.9E-05 3E-09 73.7 9.1 85 198-312 72-160 (369)
324 2afh_E Nitrogenase iron protei 97.7 0.00034 1.2E-08 66.6 12.6 40 70-109 3-42 (289)
325 1htw_A HI0065; nucleotide-bind 97.7 1E-05 3.5E-10 70.8 1.7 36 64-100 28-63 (158)
326 4a74_A DNA repair and recombin 97.7 6.5E-05 2.2E-09 68.5 6.8 29 66-94 22-50 (231)
327 3h2y_A GTPase family protein; 97.7 8E-05 2.7E-09 74.0 7.9 86 197-312 69-158 (368)
328 3zq6_A Putative arsenical pump 97.6 0.012 4.3E-07 56.9 22.6 40 69-108 14-53 (324)
329 1knq_A Gluconate kinase; ALFA/ 97.6 0.0004 1.4E-08 60.7 10.3 27 67-93 6-32 (175)
330 2xj4_A MIPZ; replication, cell 97.6 0.00041 1.4E-08 66.1 11.1 38 70-107 5-43 (286)
331 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.00051 1.8E-08 62.3 11.2 40 67-106 21-60 (235)
332 1t9h_A YLOQ, probable GTPase E 97.5 6.6E-05 2.2E-09 72.8 5.2 84 195-308 84-171 (307)
333 1nlf_A Regulatory protein REPA 97.5 0.00036 1.2E-08 66.1 10.3 29 66-94 27-55 (279)
334 1t9h_A YLOQ, probable GTPase E 97.5 2.8E-05 9.5E-10 75.4 2.4 30 67-96 171-200 (307)
335 2v9p_A Replication protein E1; 97.5 1.2E-05 4.3E-10 77.8 -0.1 33 61-93 118-150 (305)
336 2kjq_A DNAA-related protein; s 97.5 0.00039 1.3E-08 59.8 9.5 30 68-97 35-64 (149)
337 4aby_A DNA repair protein RECN 97.5 0.00014 4.8E-09 72.9 7.6 28 148-175 296-325 (415)
338 1cr0_A DNA primase/helicase; R 97.5 0.0007 2.4E-08 64.6 12.0 43 64-106 30-73 (296)
339 2cvh_A DNA repair and recombin 97.5 0.00014 4.9E-09 65.7 6.6 38 66-106 17-54 (220)
340 2ewv_A Twitching motility prot 97.5 0.00013 4.3E-09 72.7 6.5 39 67-105 134-173 (372)
341 1z6g_A Guanylate kinase; struc 97.5 4.9E-05 1.7E-09 69.8 3.0 36 58-93 12-47 (218)
342 1ihu_A Arsenical pump-driving 97.4 0.01 3.5E-07 62.4 20.6 41 68-108 7-47 (589)
343 3l82_B F-box only protein 4; T 97.4 0.00052 1.8E-08 62.6 8.7 90 198-312 126-221 (227)
344 3io3_A DEHA2D07832P; chaperone 97.4 0.0088 3E-07 58.8 18.3 41 68-108 17-59 (348)
345 3c8u_A Fructokinase; YP_612366 97.4 0.00011 3.9E-09 66.5 4.4 30 67-96 20-49 (208)
346 3ug7_A Arsenical pump-driving 97.4 0.013 4.6E-07 57.4 19.6 41 68-108 25-65 (349)
347 1tf7_A KAIC; homohexamer, hexa 97.4 0.00092 3.1E-08 69.4 11.6 101 66-174 278-379 (525)
348 1xjc_A MOBB protein homolog; s 97.3 0.00013 4.5E-09 64.4 4.3 41 68-108 3-43 (169)
349 1np6_A Molybdopterin-guanine d 97.3 0.00014 4.9E-09 64.4 4.4 40 68-107 5-44 (174)
350 3thx_A DNA mismatch repair pro 97.3 0.00047 1.6E-08 76.3 9.3 24 66-89 659-682 (934)
351 1zp6_A Hypothetical protein AT 97.3 0.00017 6E-09 63.9 4.9 26 67-92 7-32 (191)
352 2rcn_A Probable GTPase ENGC; Y 97.3 0.00093 3.2E-08 66.0 10.1 82 196-308 129-213 (358)
353 3bh0_A DNAB-like replicative h 97.3 0.0013 4.4E-08 63.7 10.9 40 66-105 65-104 (315)
354 3tr0_A Guanylate kinase, GMP k 97.3 0.00014 4.7E-09 65.2 3.7 26 68-93 6-31 (205)
355 1znw_A Guanylate kinase, GMP k 97.3 0.00013 4.6E-09 66.0 3.6 29 65-93 16-44 (207)
356 4a1f_A DNAB helicase, replicat 97.3 0.0024 8.2E-08 62.6 12.7 41 66-106 43-83 (338)
357 3iqw_A Tail-anchored protein t 97.3 0.014 4.9E-07 56.9 18.3 40 69-108 16-55 (334)
358 3thx_B DNA mismatch repair pro 97.3 0.00059 2E-08 75.3 9.0 97 64-177 668-764 (918)
359 2woj_A ATPase GET3; tail-ancho 97.2 0.0034 1.2E-07 61.8 13.7 40 69-108 18-59 (354)
360 1byi_A Dethiobiotin synthase; 97.2 0.0082 2.8E-07 54.3 15.3 33 71-103 3-36 (224)
361 1sq5_A Pantothenate kinase; P- 97.2 0.00025 8.6E-09 68.6 5.0 40 67-106 78-119 (308)
362 1kgd_A CASK, peripheral plasma 97.2 0.00018 6E-09 63.8 3.5 26 68-93 4-29 (180)
363 1lvg_A Guanylate kinase, GMP k 97.2 0.00013 4.4E-09 65.8 2.7 26 68-93 3-28 (198)
364 1pzn_A RAD51, DNA repair and r 97.1 0.00065 2.2E-08 66.9 7.3 28 66-93 128-155 (349)
365 2r8r_A Sensor protein; KDPD, P 97.1 0.0029 9.8E-08 58.3 11.1 39 69-107 6-44 (228)
366 1s96_A Guanylate kinase, GMP k 97.1 0.00022 7.7E-09 65.5 3.6 28 67-94 14-41 (219)
367 1rz3_A Hypothetical protein rb 97.1 0.0003 1E-08 63.4 4.3 40 67-106 20-59 (201)
368 3lnc_A Guanylate kinase, GMP k 97.1 0.00014 4.9E-09 66.9 2.1 35 59-93 17-52 (231)
369 2jeo_A Uridine-cytidine kinase 97.1 0.00026 9E-09 65.8 3.8 35 59-93 15-49 (245)
370 3a00_A Guanylate kinase, GMP k 97.1 0.0002 6.7E-09 63.7 2.8 25 70-94 2-26 (186)
371 3ez9_A Para; DNA binding, wing 97.1 0.00059 2E-08 68.3 6.6 42 67-108 109-157 (403)
372 1n0w_A DNA repair protein RAD5 97.1 0.0028 9.7E-08 57.9 10.4 26 67-92 22-47 (243)
373 3asz_A Uridine kinase; cytidin 97.1 0.00029 9.8E-09 63.6 3.5 38 67-107 4-41 (211)
374 2woo_A ATPase GET3; tail-ancho 97.1 0.0027 9.4E-08 61.8 10.7 40 69-108 19-58 (329)
375 2j41_A Guanylate kinase; GMP, 97.0 0.00034 1.2E-08 62.6 3.8 27 67-93 4-30 (207)
376 3l2o_B F-box only protein 4; s 97.0 0.0016 5.3E-08 62.3 8.4 90 198-312 211-306 (312)
377 3tau_A Guanylate kinase, GMP k 97.0 0.00036 1.2E-08 63.3 3.9 28 67-94 6-33 (208)
378 2rcn_A Probable GTPase ENGC; Y 97.0 0.00036 1.2E-08 69.0 4.0 32 68-99 214-246 (358)
379 3tqc_A Pantothenate kinase; bi 97.0 0.00053 1.8E-08 66.8 5.2 41 66-106 89-131 (321)
380 3ney_A 55 kDa erythrocyte memb 97.0 0.00037 1.3E-08 63.1 3.7 28 66-93 16-43 (197)
381 4eun_A Thermoresistant glucoki 97.0 0.00036 1.2E-08 62.7 3.6 27 67-93 27-53 (200)
382 2ehv_A Hypothetical protein PH 97.0 0.00044 1.5E-08 63.7 4.3 26 66-91 27-52 (251)
383 2yvu_A Probable adenylyl-sulfa 97.0 0.00048 1.6E-08 61.0 4.2 37 67-103 11-47 (186)
384 2zr9_A Protein RECA, recombina 97.0 0.0017 5.7E-08 64.0 8.5 92 67-178 59-152 (349)
385 1p9r_A General secretion pathw 97.0 0.00058 2E-08 68.9 5.2 40 67-106 165-204 (418)
386 3zvl_A Bifunctional polynucleo 97.0 0.0046 1.6E-07 62.2 11.9 28 66-93 255-282 (416)
387 3uie_A Adenylyl-sulfate kinase 97.0 0.00046 1.6E-08 62.0 3.9 30 66-95 22-51 (200)
388 1u0l_A Probable GTPase ENGC; p 96.9 0.00039 1.3E-08 67.0 3.5 33 68-100 168-200 (301)
389 3ez2_A Plasmid partition prote 96.9 0.0026 8.9E-08 63.4 9.4 42 67-108 106-154 (398)
390 2q6t_A DNAB replication FORK h 96.9 0.024 8.3E-07 57.3 16.7 40 66-105 197-237 (444)
391 3of5_A Dethiobiotin synthetase 96.9 0.011 3.8E-07 54.4 12.7 160 70-244 5-182 (228)
392 3pih_A Uvrabc system protein A 96.9 0.0069 2.4E-07 66.8 13.0 49 126-175 785-836 (916)
393 2vp4_A Deoxynucleoside kinase; 96.9 0.00085 2.9E-08 61.8 5.0 28 65-92 16-43 (230)
394 3bgw_A DNAB-like replicative h 96.9 0.0063 2.2E-07 61.8 11.7 41 66-106 194-234 (444)
395 2gza_A Type IV secretion syste 96.8 0.00071 2.4E-08 66.9 4.5 38 67-104 173-210 (361)
396 3hr8_A Protein RECA; alpha and 96.8 0.0016 5.6E-08 64.2 6.8 40 67-106 59-98 (356)
397 3vaa_A Shikimate kinase, SK; s 96.8 0.00066 2.3E-08 60.9 3.6 35 59-93 15-49 (199)
398 2vf7_A UVRA2, excinuclease ABC 96.8 0.0021 7.1E-08 70.3 8.1 48 126-174 710-760 (842)
399 2bdt_A BH3686; alpha-beta prot 96.8 0.00057 1.9E-08 60.6 3.0 22 70-91 3-24 (189)
400 2bbw_A Adenylate kinase 4, AK4 96.8 0.00068 2.3E-08 62.9 3.6 24 68-91 26-49 (246)
401 1kag_A SKI, shikimate kinase I 96.8 0.0006 2E-08 59.3 3.0 24 70-93 5-28 (173)
402 2r6f_A Excinuclease ABC subuni 96.8 0.0042 1.4E-07 68.4 10.3 48 126-175 825-876 (972)
403 2yv5_A YJEQ protein; hydrolase 96.8 0.00071 2.4E-08 65.2 3.7 30 68-98 164-193 (302)
404 3fkq_A NTRC-like two-domain pr 96.8 0.011 3.7E-07 58.5 12.4 41 66-106 140-181 (373)
405 1ewq_A DNA mismatch repair pro 96.7 0.0019 6.4E-08 70.0 7.1 87 69-176 576-666 (765)
406 1y63_A LMAJ004144AAA protein; 96.7 0.00092 3.1E-08 59.2 3.7 29 64-92 5-33 (184)
407 2i3b_A HCR-ntpase, human cance 96.7 0.0007 2.4E-08 60.7 2.9 25 70-94 2-26 (189)
408 2ygr_A Uvrabc system protein A 96.7 0.0058 2E-07 67.5 10.5 47 127-175 844-894 (993)
409 2o8b_B DNA mismatch repair pro 96.7 0.002 6.9E-08 72.0 7.1 91 69-177 789-880 (1022)
410 2obl_A ESCN; ATPase, hydrolase 96.7 0.00098 3.3E-08 65.6 4.0 40 64-103 66-105 (347)
411 2f1r_A Molybdopterin-guanine d 96.7 0.00051 1.7E-08 60.7 1.7 34 70-103 3-36 (171)
412 1u94_A RECA protein, recombina 96.6 0.012 3.9E-07 58.1 11.4 92 67-178 61-154 (356)
413 2qor_A Guanylate kinase; phosp 96.6 0.00089 3.1E-08 60.3 3.0 26 68-93 11-36 (204)
414 1xp8_A RECA protein, recombina 96.6 0.014 4.7E-07 57.8 11.8 92 67-178 72-165 (366)
415 2r6a_A DNAB helicase, replicat 96.6 0.021 7.2E-07 58.0 13.5 41 66-106 200-241 (454)
416 3ec2_A DNA replication protein 96.6 0.00092 3.1E-08 58.8 2.9 26 69-94 38-63 (180)
417 2oap_1 GSPE-2, type II secreti 96.6 0.0015 5E-08 67.7 4.8 37 68-104 259-295 (511)
418 3euj_A Chromosome partition pr 96.5 0.00063 2.2E-08 69.8 1.7 44 61-105 22-65 (483)
419 2dpy_A FLII, flagellum-specifi 96.5 0.0015 5.3E-08 66.2 4.6 41 64-104 152-192 (438)
420 2qt1_A Nicotinamide riboside k 96.5 0.0018 6.2E-08 58.2 4.3 28 66-93 18-45 (207)
421 3t61_A Gluconokinase; PSI-biol 96.5 0.0013 4.3E-08 59.0 3.2 26 68-93 17-42 (202)
422 1ukz_A Uridylate kinase; trans 96.5 0.0019 6.6E-08 57.7 4.4 29 65-93 11-39 (203)
423 3qxc_A Dethiobiotin synthetase 96.5 0.041 1.4E-06 51.1 13.6 164 66-245 18-203 (242)
424 1wb9_A DNA mismatch repair pro 96.5 0.01 3.5E-07 64.7 10.6 27 67-93 605-631 (800)
425 4eaq_A DTMP kinase, thymidylat 96.5 0.0025 8.6E-08 58.7 5.0 33 67-100 24-56 (229)
426 3lw7_A Adenylate kinase relate 96.5 0.0015 5E-08 56.3 3.2 20 70-89 2-21 (179)
427 1fnn_A CDC6P, cell division co 96.4 0.026 8.9E-07 55.1 12.6 51 33-96 21-71 (389)
428 1cke_A CK, MSSA, protein (cyti 96.4 0.0017 5.7E-08 59.1 3.6 25 69-93 5-29 (227)
429 1ly1_A Polynucleotide kinase; 96.4 0.0017 5.9E-08 56.4 3.5 22 70-91 3-24 (181)
430 2pez_A Bifunctional 3'-phospho 96.4 0.0019 6.4E-08 56.7 3.8 28 68-95 4-31 (179)
431 1jjv_A Dephospho-COA kinase; P 96.4 0.0018 6.3E-08 58.0 3.7 22 70-91 3-24 (206)
432 2rhm_A Putative kinase; P-loop 96.4 0.0019 6.4E-08 57.0 3.6 26 68-93 4-29 (193)
433 3kb2_A SPBC2 prophage-derived 96.4 0.0016 5.4E-08 56.2 3.1 24 70-93 2-25 (173)
434 1qhx_A CPT, protein (chloramph 96.4 0.0019 6.4E-08 56.3 3.5 25 69-93 3-27 (178)
435 3fgn_A Dethiobiotin synthetase 96.4 0.057 2E-06 50.4 13.9 157 68-242 25-197 (251)
436 3cm0_A Adenylate kinase; ATP-b 96.3 0.0019 6.4E-08 56.8 3.2 26 68-93 3-28 (186)
437 4e22_A Cytidylate kinase; P-lo 96.3 0.0022 7.4E-08 60.0 3.7 26 67-92 25-50 (252)
438 1lw7_A Transcriptional regulat 96.3 0.0017 5.8E-08 64.1 3.0 35 62-96 161-197 (365)
439 1nks_A Adenylate kinase; therm 96.3 0.0029 9.8E-08 55.6 4.2 26 70-95 2-27 (194)
440 1ixz_A ATP-dependent metallopr 96.3 0.0016 5.5E-08 60.5 2.6 22 72-93 52-73 (254)
441 1kht_A Adenylate kinase; phosp 96.3 0.0022 7.6E-08 56.3 3.4 25 69-93 3-27 (192)
442 2if2_A Dephospho-COA kinase; a 96.3 0.002 6.8E-08 57.6 3.1 22 70-91 2-23 (204)
443 1nn5_A Similar to deoxythymidy 96.3 0.0029 9.8E-08 56.8 4.1 28 67-94 7-34 (215)
444 2cdn_A Adenylate kinase; phosp 96.2 0.0028 9.7E-08 56.6 3.8 28 66-93 17-44 (201)
445 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.0029 9.8E-08 59.4 4.0 26 68-93 3-28 (260)
446 2plr_A DTMP kinase, probable t 96.2 0.0026 9E-08 56.8 3.6 28 68-95 3-30 (213)
447 2v54_A DTMP kinase, thymidylat 96.2 0.0028 9.6E-08 56.4 3.7 26 68-93 3-28 (204)
448 1m7g_A Adenylylsulfate kinase; 96.2 0.0027 9.2E-08 57.4 3.5 27 68-94 24-50 (211)
449 1odf_A YGR205W, hypothetical 3 96.1 0.0031 1E-07 60.4 3.9 29 67-95 29-57 (290)
450 1ex7_A Guanylate kinase; subst 96.1 0.0024 8.1E-08 57.2 2.9 22 72-93 4-25 (186)
451 1v5w_A DMC1, meiotic recombina 96.1 0.014 4.9E-07 57.0 8.7 27 66-92 119-145 (343)
452 1iy2_A ATP-dependent metallopr 96.1 0.0022 7.4E-08 60.6 2.7 22 72-93 76-97 (278)
453 2c95_A Adenylate kinase 1; tra 96.1 0.003 1E-07 55.8 3.4 26 68-93 8-33 (196)
454 3iij_A Coilin-interacting nucl 96.1 0.0031 1.1E-07 55.2 3.5 26 68-93 10-35 (180)
455 1tev_A UMP-CMP kinase; ploop, 96.1 0.0031 1.1E-07 55.5 3.5 26 68-93 2-27 (196)
456 2dr3_A UPF0273 protein PH0284; 96.1 0.0033 1.1E-07 57.6 3.7 40 67-106 21-60 (247)
457 2wwf_A Thymidilate kinase, put 96.1 0.0033 1.1E-07 56.3 3.6 27 68-94 9-35 (212)
458 3umf_A Adenylate kinase; rossm 96.1 0.0037 1.3E-07 57.3 4.0 28 66-93 26-53 (217)
459 1gtv_A TMK, thymidylate kinase 96.1 0.0014 4.7E-08 59.0 1.0 31 71-101 2-32 (214)
460 1aky_A Adenylate kinase; ATP:A 96.1 0.0031 1.1E-07 57.2 3.4 26 68-93 3-28 (220)
461 3lda_A DNA repair protein RAD5 96.1 0.022 7.4E-07 57.0 9.8 25 66-90 175-199 (400)
462 3trf_A Shikimate kinase, SK; a 96.1 0.0033 1.1E-07 55.1 3.4 25 69-93 5-29 (185)
463 2x8a_A Nuclear valosin-contain 96.0 0.0032 1.1E-07 59.6 3.5 23 72-94 47-69 (274)
464 3pg5_A Uncharacterized protein 96.0 0.0057 2E-07 60.3 5.4 38 71-108 3-41 (361)
465 1qf9_A UMP/CMP kinase, protein 96.0 0.0042 1.4E-07 54.5 4.0 26 68-93 5-30 (194)
466 3kta_A Chromosome segregation 96.0 0.0031 1.1E-07 55.2 3.0 24 71-94 28-51 (182)
467 1uf9_A TT1252 protein; P-loop, 96.0 0.0039 1.3E-07 55.4 3.7 26 67-92 6-31 (203)
468 2jaq_A Deoxyguanosine kinase; 96.0 0.0034 1.2E-07 55.7 3.3 23 71-93 2-24 (205)
469 1ihu_A Arsenical pump-driving 96.0 0.055 1.9E-06 56.7 13.0 40 69-108 327-366 (589)
470 1gvn_B Zeta; postsegregational 96.0 0.004 1.4E-07 59.4 3.9 27 67-93 31-57 (287)
471 1bif_A 6-phosphofructo-2-kinas 96.0 0.0047 1.6E-07 63.1 4.6 27 67-93 37-63 (469)
472 2vli_A Antibiotic resistance p 96.0 0.0026 9E-08 55.6 2.3 26 68-93 4-29 (183)
473 2z43_A DNA repair and recombin 95.9 0.018 6.3E-07 55.7 8.4 28 66-93 104-131 (324)
474 1zd8_A GTP:AMP phosphotransfer 95.9 0.0036 1.2E-07 57.2 3.1 26 68-93 6-31 (227)
475 3tlx_A Adenylate kinase 2; str 95.9 0.0047 1.6E-07 57.3 3.7 26 68-93 28-53 (243)
476 1vht_A Dephospho-COA kinase; s 95.9 0.0053 1.8E-07 55.5 3.9 24 68-91 3-26 (218)
477 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.0051 1.7E-07 52.7 3.5 25 69-93 23-47 (149)
478 1zak_A Adenylate kinase; ATP:A 95.8 0.0038 1.3E-07 56.7 2.8 26 68-93 4-29 (222)
479 2p5t_B PEZT; postsegregational 95.8 0.0039 1.3E-07 58.2 2.8 28 66-93 29-56 (253)
480 4ido_A Atlastin-1; GTPase, GTP 95.8 0.0098 3.4E-07 60.3 5.9 25 67-91 65-89 (457)
481 1tf7_A KAIC; homohexamer, hexa 95.8 0.0051 1.7E-07 63.8 4.0 42 65-106 35-78 (525)
482 3cr8_A Sulfate adenylyltranfer 95.8 0.0037 1.3E-07 65.2 2.9 38 67-104 367-405 (552)
483 1q57_A DNA primase/helicase; d 95.8 0.12 4.3E-06 52.8 14.4 40 66-105 239-279 (503)
484 2bwj_A Adenylate kinase 5; pho 95.8 0.0048 1.6E-07 54.6 3.2 25 69-93 12-36 (199)
485 3io5_A Recombination and repai 95.7 0.02 6.7E-07 55.5 7.5 36 68-104 28-65 (333)
486 3bos_A Putative DNA replicatio 95.7 0.0074 2.5E-07 54.7 4.3 34 69-102 52-85 (242)
487 3b9p_A CG5977-PA, isoform A; A 95.7 0.023 7.8E-07 53.8 7.9 26 68-93 53-78 (297)
488 3h4m_A Proteasome-activating n 95.7 0.02 7E-07 53.7 7.4 26 68-93 50-75 (285)
489 1svm_A Large T antigen; AAA+ f 95.7 0.0063 2.1E-07 60.5 3.9 29 65-93 165-193 (377)
490 1qhl_A Protein (cell division 95.7 0.00082 2.8E-08 62.1 -2.4 33 70-102 28-60 (227)
491 3fb4_A Adenylate kinase; psych 95.7 0.0054 1.8E-07 55.3 3.1 23 71-93 2-24 (216)
492 2w58_A DNAI, primosome compone 95.6 0.0087 3E-07 53.2 4.4 31 70-100 55-85 (202)
493 1in4_A RUVB, holliday junction 95.6 0.0053 1.8E-07 59.7 3.1 24 70-93 52-75 (334)
494 2z0h_A DTMP kinase, thymidylat 95.6 0.0075 2.6E-07 53.2 3.9 28 71-98 2-29 (197)
495 3nwj_A ATSK2; P loop, shikimat 95.6 0.0054 1.8E-07 57.4 3.0 25 69-93 48-72 (250)
496 1ak2_A Adenylate kinase isoenz 95.6 0.0067 2.3E-07 55.7 3.6 27 67-93 14-40 (233)
497 3dl0_A Adenylate kinase; phosp 95.6 0.0059 2E-07 55.1 3.1 23 71-93 2-24 (216)
498 1via_A Shikimate kinase; struc 95.6 0.0056 1.9E-07 53.3 2.7 23 71-93 6-28 (175)
499 1a7j_A Phosphoribulokinase; tr 95.5 0.0045 1.5E-07 59.2 2.2 39 68-106 4-42 (290)
500 2pbr_A DTMP kinase, thymidylat 95.5 0.0071 2.4E-07 53.1 3.3 23 71-93 2-24 (195)
No 1
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.96 E-value=1.2e-29 Score=248.64 Aligned_cols=218 Identities=16% Similarity=0.184 Sum_probs=164.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..+..+|+|+|.||||||||+|+|++..+.. ++..++++ +..+ .+++.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i------------~s~~~~tT----~~~~--------------~~~~~-- 54 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI------------ISPKAGTT----RMRV--------------LGVKN-- 54 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC------------CCSSSCCC----CSCE--------------EEEEE--
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccc------------cCCCCCce----eeEE--------------EEEEe--
Confidence 3456799999999999999999999987553 45555555 2111 12222
Q ss_pred ccccccHHHHHHHHHHHhc-CCCEEEEcCCCcccccchhchHHHHHHHHHh--cCCcEEEEEEeCCCCCCchhhhhhHHH
Q 014354 146 NLFTTKFDEVISLIERRAD-HLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLY 222 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~-~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~--~~~d~vl~VVDa~~~~~~~~~~~~~l~ 222 (426)
.. +.+++||||||+.++..+..++..+...... ..+|++++|+|+..+.+..+ ..
T Consensus 55 -----------------~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~-----~~ 112 (308)
T 3iev_A 55 -----------------IPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRD-----EE 112 (308)
T ss_dssp -----------------ETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHH-----HH
T ss_pred -----------------cCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchh-----HH
Confidence 13 5789999999998864334455544444332 34899999999988776544 22
Q ss_pred H-HHHHhhccCCeEEEEecCCCC-ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC
Q 014354 223 A-CSILYKTRLPLVLAFNKTDVA-QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300 (426)
Q Consensus 223 ~-~~~l~~~~~P~IlVlNKiDl~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g 300 (426)
. +..+...++|+|+|+||+|+. ...........+.. .+..+.+++++||++|.|
T Consensus 113 ~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~------------------------~~~~~~~i~~vSA~~g~g 168 (308)
T 3iev_A 113 IYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHK------------------------KHPELTEIVPISALKGAN 168 (308)
T ss_dssp HHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHH------------------------HCTTCCCEEECBTTTTBS
T ss_pred HHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHH------------------------hccCCCeEEEEeCCCCCC
Confidence 2 455667789999999999998 55544444333321 112457899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeecc
Q 014354 301 IEAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNT 361 (426)
Q Consensus 301 v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~~~~~~~~~~~ 361 (426)
+.+++++|...+++.+++||.+..++.+.++.+.+++|+++++.+.+|+||+....+-.+.
T Consensus 169 v~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~ 229 (308)
T 3iev_A 169 LDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIK 229 (308)
T ss_dssp HHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEE
T ss_pred HHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEE
Confidence 9999999999999999999999999999999999999999999999999999877766554
No 2
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.94 E-value=5.1e-28 Score=236.43 Aligned_cols=211 Identities=20% Similarity=0.245 Sum_probs=155.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|+||||||||+|+|++..++. ++..|++| ++.+ .+++.
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~i------------vs~~~~tT----r~~i--------------~~i~~---- 51 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAP------------ISPRPQTT----RKRL--------------RGILT---- 51 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSC------------CCSSSCCC----CSCE--------------EEEEE----
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceee------------ecCCCCce----eEEE--------------EEEEE----
Confidence 45689999999999999999999987543 44555555 2211 12222
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh--cCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~--~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
..+.+++||||||+.++ ...++..+...... ..+|++++|+|+.++.+..+ ..++.
T Consensus 52 ---------------~~~~~l~l~DTpG~~~~--~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~-----~~i~~ 109 (301)
T 1wf3_A 52 ---------------EGRRQIVFVDTPGLHKP--MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-----ELVAR 109 (301)
T ss_dssp ---------------ETTEEEEEEECCCCCCC--CSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH-----HHHHH
T ss_pred ---------------eCCcEEEEecCccccch--hhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHH-----HHHHH
Confidence 24578999999999875 23333333333322 45899999999988766543 22334
Q ss_pred HHhhc--cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 226 ILYKT--RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 226 ~l~~~--~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
.+... ++|+|+|+||+|+...... +...+. .+..+.+++++||++|.|+.+
T Consensus 110 ~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~-------------------------~~~~~~~~~~iSA~~g~gv~~ 162 (301)
T 1wf3_A 110 ALKPLVGKVPILLVGNKLDAAKYPEE--AMKAYH-------------------------ELLPEAEPRMLSALDERQVAE 162 (301)
T ss_dssp HHGGGTTTSCEEEEEECGGGCSSHHH--HHHHHH-------------------------HTSTTSEEEECCTTCHHHHHH
T ss_pred HHHhhcCCCCEEEEEECcccCCchHH--HHHHHH-------------------------HhcCcCcEEEEeCCCCCCHHH
Confidence 45555 8999999999999876530 111111 123456799999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhHHH-hHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeecc
Q 014354 304 YFKAVEESAQEFMETYKADLD-KRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNT 361 (426)
Q Consensus 304 l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~re~~~~~l~~e~~~~~~~~~~~~~ 361 (426)
+++.|...+++.+++||.+.. ++.+.++.+.+.+|+++++.+.+++||+....+-.+.
T Consensus 163 l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~ 221 (301)
T 1wf3_A 163 LKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVA 221 (301)
T ss_dssp HHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEE
T ss_pred HHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEEEEEEEEE
Confidence 999999999888888988877 7888888999999999999999999999887776665
No 3
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.93 E-value=8.8e-27 Score=227.64 Aligned_cols=212 Identities=23% Similarity=0.230 Sum_probs=151.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
++.+|+|+|+||||||||+|+|++..++. ++..++++ ++.+ .|++.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i------------~s~~~~tT----r~~~--------------~gi~~---- 52 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISI------------TSRKAQTT----RHRI--------------VGIHT---- 52 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEE------------CCCCSSCC----SSCE--------------EEEEE----
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccc------------cCCCCCcc----eeeE--------------EEEEE----
Confidence 55689999999999999999999986431 33344444 2111 12222
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcc-cccchhchHHHHHHHHHh--cCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~-e~~~~~~~~~~l~~~~~~--~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
..+.++.||||||+. .+. ..+...+...... ..+|++++|+|+.. ++..+. .++
T Consensus 53 ---------------~~~~~i~~iDTpG~~~~~~--~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~-----~i~ 109 (301)
T 1ega_A 53 ---------------EGAYQAIYVDTPGLHMEEK--RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDE-----MVL 109 (301)
T ss_dssp ---------------ETTEEEEEESSSSCCHHHH--HHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHH-----HHH
T ss_pred ---------------ECCeeEEEEECcCCCccch--hhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH-----HHH
Confidence 244689999999997 431 2222222111111 34799999999977 665442 334
Q ss_pred HHHhhccCCeEEEEecCCCCC-hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 225 SILYKTRLPLVLAFNKTDVAQ-HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
..+...+.|.|+|+||+|+.. .....+....+. ..+++..++++||++|.|+.+
T Consensus 110 ~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~-------------------------~~~~~~~~i~iSA~~g~~v~~ 164 (301)
T 1ega_A 110 NKLREGKAPVILAVNKVDNVQEKADLLPHLQFLA-------------------------SQMNFLDIVPISAETGLNVDT 164 (301)
T ss_dssp HHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHH-------------------------TTSCCSEEEECCTTTTTTHHH
T ss_pred HHHHhcCCCEEEEEECcccCccHHHHHHHHHHHH-------------------------HhcCcCceEEEECCCCCCHHH
Confidence 445566899999999999987 332222222111 123345799999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeecc
Q 014354 304 YFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNT 361 (426)
Q Consensus 304 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~~~~~~~~~~~ 361 (426)
+++.|...+++.+++||.+..++.+.++.+.+.+|+++++.+.+++||+....+-.+.
T Consensus 165 l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~~~~ 222 (301)
T 1ega_A 165 IAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFV 222 (301)
T ss_dssp HHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEE
T ss_pred HHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEEEE
Confidence 9999999999888899888888888999999999999999999999999777766554
No 4
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.90 E-value=2e-23 Score=198.42 Aligned_cols=243 Identities=27% Similarity=0.413 Sum_probs=158.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..+..+++++|.+|||||||+++|+.... .+.++.+++.||.....++....++++...+++++.. ++.+|++++++.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 88 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVESY 88 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT-TCCHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhc-cCCCCCcEEecH
Confidence 45678999999999999999999998887 8889999999998766554444455555555555555 667777777654
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
.++.....++...+.....+++++||||||+.++.....++..+.+.+ .. +++|+|+|+....+...++........
T Consensus 89 ~~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~--~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~ 165 (262)
T 1yrb_A 89 DRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL--PY-PLVVYISDPEILKKPNDYCFVRFFALL 165 (262)
T ss_dssp HHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTS--SS-CEEEEEECGGGCCSHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHH--hh-ceEEeccchhhhcCHHHHHHHHHHHHH
Confidence 333333444444444444568999999999988644333344444433 44 899999999877666555433322223
Q ss_pred HHhhccCCeEEEEecCCCCChHhHHHHHH---HHHHHHHHhccc---cchhhhHHHHhhhhHhhhhcCCceEEeecccCC
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQ---DFEVFQAAISSD---HSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA 299 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~---~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~ 299 (426)
.....++|.++|+||+|+..........+ .+..+...+... ..|.. + +++..+..+....+++++||++|.
T Consensus 166 ~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~-~--~l~~~~~~~~~~~~~~~~SA~~~~ 242 (262)
T 1yrb_A 166 IDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMA-Y--KMCSMMTEVLPPVRVLYLSAKTRE 242 (262)
T ss_dssp HHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHH-H--HHHHHHHHHSCCCCCEECCTTTCT
T ss_pred HhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhH-h--HHHHHHHHhcCcccceEEEecCcc
Confidence 34456899999999999987653322222 222222111000 00100 1 222233444444589999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 014354 300 GIEAYFKAVEESAQEFM 316 (426)
Q Consensus 300 gv~~l~~~l~~~~~~~~ 316 (426)
|+++|+++|.+.++..+
T Consensus 243 gi~~l~~~i~~~~~~~~ 259 (262)
T 1yrb_A 243 GFEDLETLAYEHYCTCG 259 (262)
T ss_dssp THHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHhcccc
Confidence 99999999998877643
No 5
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.86 E-value=3e-21 Score=186.95 Aligned_cols=158 Identities=14% Similarity=0.063 Sum_probs=106.4
Q ss_pred CCCEEEEcCCCcccccc----hh---chHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEE
Q 014354 165 HLDYVLVDTPGQIEIFT----WS---ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLA 237 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~----~~---~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlV 237 (426)
..++.||||||+..... .. .....+..++. ...+++++|+|+...+...+. ..++..+...+.|+|+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~v~d~~~~~~~~~~----~~~~~~~~~~~~~~i~V 198 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDLANSDA----LKIAKEVDPQGQRTIGV 198 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHT-STTEEEEEEEESSSCGGGCHH----HHHHHHHCTTCSSEEEE
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHc-CCCeEEEEEecCCcchhhhHH----HHHHHHhCCCCCeEEEE
Confidence 37899999999875311 11 11122222222 223466689999876554432 12344455568999999
Q ss_pred EecCCCCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHHH
Q 014354 238 FNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFM 316 (426)
Q Consensus 238 lNKiDl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~ 316 (426)
+||+|+..... ...+ +. .. +. . -..++.+++++||++|.|+.+++++|.. +.+
T Consensus 199 ~NK~Dl~~~~~~~~~~---~~---~~--------------~~-~--~~~~~~~v~~~SA~~~~gi~~l~~~l~~---~~~ 252 (299)
T 2aka_B 199 ITKLDLMDEGTDARDV---LE---NK--------------LL-P--LRRGYIGVVNRSQKDIDGKKDITAALAA---ERK 252 (299)
T ss_dssp EECGGGSCTTCCCHHH---HT---TC--------------SS-C--CTTCEEECCCCCCBCTTSCBCHHHHHHH---HHH
T ss_pred EEccccCCCCchHHHH---Hh---CC--------------cC-c--CCCCcEEEECCChhhccccccHHHHHHH---HHH
Confidence 99999987542 1111 11 00 00 0 0012357899999999999999999987 677
Q ss_pred hhhhhHHHhHHHHH---HHHHHHHHHHHHHHHHhhhcccc
Q 014354 317 ETYKADLDKRRAEK---QRLEEERQKENINKLRKDMEKSK 353 (426)
Q Consensus 317 ~~~~~~~~~~~~~~---~~~~e~~re~~~~~l~~e~~~~~ 353 (426)
++|+...++....+ +.+.+.+|++++.++.+++||..
T Consensus 253 ~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~ 292 (299)
T 2aka_B 253 FFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLR 292 (299)
T ss_dssp HHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 88888888887777 99999999999999999999864
No 6
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.86 E-value=1e-20 Score=188.30 Aligned_cols=234 Identities=18% Similarity=0.181 Sum_probs=135.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCC--------CC
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLG--------PN 138 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~--------~n 138 (426)
+.+++|+|+|+||||||||+|+|++.....+++++|+..||...... +..+ .+ ...|..++.. +.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~-g~~l--~d----~~rm~~~~~~~~~~v~~~~~ 144 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSG-GSLL--GD----KTRMTELSRDMNAYIRPSPT 144 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-----------------------CCSTTCTTEEEECC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcC-cchh--ch----HHHHHHhcCCCCEEEEecCC
Confidence 35789999999999999999999999888889999999988653211 0001 01 1112333321 22
Q ss_pred CCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhh
Q 014354 139 GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMS 218 (426)
Q Consensus 139 g~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~ 218 (426)
+|.++. ......+.+..+. ..+++++|+||||+... . ..+ ...+|++++|+|+..+......
T Consensus 145 ~~~lgg---~tr~~~~~~~~~~--~~~~~~iliDT~Gi~~~--~----~~l-----~~~~d~vl~V~d~~~~~~~~~i-- 206 (349)
T 2www_A 145 RGTLGG---VTRTTNEAILLCE--GAGYDIILIETVGVGQS--E----FAV-----ADMVDMFVLLLPPAGGDELQGI-- 206 (349)
T ss_dssp ----------CTTHHHHHHHHH--HTTCSEEEEECCCC--C--H----HHH-----HTTCSEEEEEECCC----------
T ss_pred cccccc---chHHHHHHHHhhc--cCCCCEEEEECCCcchh--h----hhH-----HhhCCEEEEEEcCCcchhHHHh--
Confidence 333321 1122222222222 46789999999998543 1 111 2467999999999765322111
Q ss_pred hHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHh-hhhcCCceEEeeccc
Q 014354 219 NMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALD-EFYKNLKSVGVSSVS 297 (426)
Q Consensus 219 ~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~vv~vSA~~ 297 (426)
.. ...+.|.++|+||+|+............+. ..+ ..... ......+++++||++
T Consensus 207 --~~-----~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~---~~l--------------~~~~~~a~~~~~~vi~iSA~~ 262 (349)
T 2www_A 207 --KR-----GIIEMADLVAVTKSDGDLIVPARRIQAEYV---SAL--------------KLLRKRSQVWKPKVIRISARS 262 (349)
T ss_dssp -----------CCSCSEEEECCCSGGGHHHHHHHHHHHH---HHH--------------TTCC-----CCCEEEECCTTT
T ss_pred --HH-----HHHhcCCEEEEeeecCCCchhHHHHHHHHH---HHH--------------HhcCccccCCCceEEEEecCC
Confidence 00 113579999999999976432221121121 110 00000 001135789999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhHHHhHH---HHHHHHHHHHHHHHHHHHHhhhccc
Q 014354 298 GAGIEAYFKAVEESAQEFMETYKADLDKRR---AEKQRLEEERQKENINKLRKDMEKS 352 (426)
Q Consensus 298 g~gv~~l~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~re~~~~~l~~e~~~~ 352 (426)
|.|+.+|+++|.+.++. .++....+.. ...+++.+.++++++.++.+++|+.
T Consensus 263 g~Gi~~L~~~I~~~~~~---~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (349)
T 2www_A 263 GEGISEMWDKMKDFQDL---MLASGELTAKRRKQQKVWMWNLIQESVLEHFRTHPTVR 317 (349)
T ss_dssp CTTHHHHHHHHHHHHHH---HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred CCCHHHHHHHHHHHHHH---HhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh
Confidence 99999999999998765 3444444443 6789999999999999999988753
No 7
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.86 E-value=2.2e-20 Score=186.43 Aligned_cols=232 Identities=19% Similarity=0.227 Sum_probs=140.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCC--------CCC
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNL--------GPN 138 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l--------~~n 138 (426)
.+.++|+|+|+||||||||+++|+......+.++.++..||........ .. .+.++ +..++. .+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~-~l--~d~~~----~~~~~~~~~~~i~~~~~ 149 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGS-IL--GDKTR----MARLAVHPNAYIRPSPT 149 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----------------------CHHHHTCTTEEEECCC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccch-hc--cchhh----HHhhccCCCeeEEECCC
Confidence 4568999999999999999999999887888999999999765421111 00 11111 111111 112
Q ss_pred CCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhh
Q 014354 139 GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMS 218 (426)
Q Consensus 139 g~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~ 218 (426)
+|.++ .++......+..+. ..+++++||||||+.... ..+ ...+|++|+|+|+..+.....+..
T Consensus 150 ~~~~~---~~~~~t~d~i~~~~--~~~~~~iiiDTpGi~~~~------~~~-----~~~aD~vl~V~d~~~~~~~~~l~~ 213 (355)
T 3p32_A 150 SGTLG---GVTRATRETVVLLE--AAGFDVILIETVGVGQSE------VAV-----ANMVDTFVLLTLARTGDQLQGIKK 213 (355)
T ss_dssp -CCHH---HHHHHHHHHHHHHH--HTTCCEEEEEECSCSSHH------HHH-----HTTCSEEEEEEESSTTCTTTTCCT
T ss_pred Ccccc---chhHHHHHHHHHHh--hCCCCEEEEeCCCCCcHH------HHH-----HHhCCEEEEEECCCCCccHHHHHH
Confidence 22222 12333334343332 467999999999975521 111 256899999999866543322111
Q ss_pred hHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccC
Q 014354 219 NMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG 298 (426)
Q Consensus 219 ~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g 298 (426)
...++|+++|+||+|+............+......+.. .......+++++||++|
T Consensus 214 ---------~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~----------------~~~~~~~~vi~iSA~~g 268 (355)
T 3p32_A 214 ---------GVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYP----------------REALWRPPVLTMSAVEG 268 (355)
T ss_dssp ---------TSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHST----------------TCCSCCCCEEEEBGGGT
T ss_pred ---------hHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccc----------------cccCCCCceEEEEcCCC
Confidence 12356999999999998665443333333321111000 00011368999999999
Q ss_pred CCHHHHHHHHHHHHHHH--HhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 014354 299 AGIEAYFKAVEESAQEF--METYKADLDKRRAEKQRLEEERQKENINKLRKD 348 (426)
Q Consensus 299 ~gv~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e 348 (426)
.|+++|+++|.+.++.. ..+|+. .......+++.+.+|++++..+.+.
T Consensus 269 ~Gi~~L~~~i~~~~~~~~~~~~~~~--~r~~~~~~~~~e~i~e~l~~~~~~~ 318 (355)
T 3p32_A 269 RGLAELWDTVERHRQVLTGAGEFDA--RRRDQQVDWTWQLVRDAVLDRVWSN 318 (355)
T ss_dssp BSHHHHHHHHHHHHHHHHHTTHHHH--HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHhhcCchHHH--HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999988773 333443 2334478889999999999988754
No 8
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.85 E-value=4e-20 Score=183.51 Aligned_cols=239 Identities=15% Similarity=0.127 Sum_probs=143.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..++.+|+|+|+||+|||||+|+|++.....++++.+++.||......+.. + .+. ..+..+...+++++++..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~i-l--~d~----~~~~~~~~~~~~~i~~~~ 125 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSI-L--GDK----TRMNDLARAEAAFIRPVP 125 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----------------------CTTTTCTTEEEEEEC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcce-e--ccc----chHHhhccCCCceeecCc
Confidence 457789999999999999999999998887888999999888654322111 1 111 113344555666655421
Q ss_pred c--cccccHHHHHHHHH-HHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH
Q 014354 146 N--LFTTKFDEVISLIE-RRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY 222 (426)
Q Consensus 146 ~--~ls~~~~~~~~~~~-~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~ 222 (426)
. .+.+..+....... ....+++++||||||+.++. ..+ ...+|++++|+|+..+....... .
T Consensus 126 ~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~------~~~-----~~~aD~vl~Vvd~~~~~~~~~l~----~ 190 (341)
T 2p67_A 126 SSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSE------TEV-----ARMVDCFISLQIAGGGDDLQGIK----K 190 (341)
T ss_dssp C-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHH------HHH-----HTTCSEEEEEECC------CCCC----H
T ss_pred cccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchH------HHH-----HHhCCEEEEEEeCCccHHHHHHH----H
Confidence 1 11222222222221 12567999999999987641 111 25689999999996543211110 0
Q ss_pred HHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354 223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 223 ~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~ 302 (426)
...++|.++|+||+|+............+......+. ..... ...+++++||++|.|++
T Consensus 191 -----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~--------------~~~~~--~~~~vi~iSA~~g~gi~ 249 (341)
T 2p67_A 191 -----GLMEVADLIVINKDDGDNHTNVAIARHMYESALHILR--------------RKYDE--WQPRVLTCSALEKRGID 249 (341)
T ss_dssp -----HHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSC--------------CSBTT--BCCEEEECBGGGTBSHH
T ss_pred -----hhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhcc--------------ccccC--CCCcEEEeeCCCCCCHH
Confidence 1125799999999999876433333223321111100 00000 13578999999999999
Q ss_pred HHHHHHHHHHHHHH--hhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 014354 303 AYFKAVEESAQEFM--ETYKADLDKRRAEKQRLEEERQKENINKLRKDM 349 (426)
Q Consensus 303 ~l~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~ 349 (426)
+|+++|.+.++.+. ..+|.. . ....++++.+.+++++++++.+++
T Consensus 250 ~L~~~l~~~~~~~~~~~~~~~~-r-~~~~~~~~~e~i~e~l~~~~~~~~ 296 (341)
T 2p67_A 250 EIWHAIIDFKTALTASGRLQQV-R-QQQSVEWLRKQTEEEVLNHLFANE 296 (341)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHhCChHHHH-H-HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999998876431 245532 2 334788889999999999999875
No 9
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.82 E-value=4e-19 Score=159.82 Aligned_cols=170 Identities=16% Similarity=0.170 Sum_probs=107.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
....++|+|+|.+|||||||+|+|++..... ....+.++ .. ....
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------~~~~~~~t-~~--------------------~~~~-- 64 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAF------------VSKTPGKT-RS--------------------INFY-- 64 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC------------CCSSCCCC-CC--------------------EEEE--
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCcccc------------ccCCCCCc-cC--------------------eEEE--
Confidence 3456799999999999999999999876321 22222221 00 0000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh----chHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS----ASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNM 220 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~----~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~ 220 (426)
..+.++.||||||+....... .........+.. ..++++++|+|+........
T Consensus 65 -----------------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~----- 122 (195)
T 3pqc_A 65 -----------------LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSD----- 122 (195)
T ss_dssp -----------------EETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-----
T ss_pred -----------------EECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHH-----
Confidence 123578999999964421100 011112222332 34689999999977654433
Q ss_pred HHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC
Q 014354 221 LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300 (426)
Q Consensus 221 l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g 300 (426)
......+...++|+++|+||+|+..........+.+..+. ..+...+++++||++|.|
T Consensus 123 ~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~g 180 (195)
T 3pqc_A 123 LMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVF----------------------SKYGEYTIIPTSSVTGEG 180 (195)
T ss_dssp HHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHH----------------------HSSCCSCEEECCTTTCTT
T ss_pred HHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHH----------------------hhcCCCceEEEecCCCCC
Confidence 2233445566899999999999987665444443333221 112446899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 014354 301 IEAYFKAVEESAQE 314 (426)
Q Consensus 301 v~~l~~~l~~~~~~ 314 (426)
+.+++++|.+.+++
T Consensus 181 v~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 181 ISELLDLISTLLKE 194 (195)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999887653
No 10
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.82 E-value=1.4e-19 Score=167.20 Aligned_cols=180 Identities=15% Similarity=0.093 Sum_probs=111.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
...++|+|+|.+|||||||+|+|++..... .+...++++ +.. .....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~-----------~~~~~~~~t----~~~-----------------~~~~~- 73 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLA-----------FASKTPGRT----QHI-----------------NYFSV- 73 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSS-----------CTTCCCCSC----CCE-----------------EEEEE-
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcce-----------eecCCCCcc----cce-----------------EEEEe-
Confidence 456789999999999999999999875210 122333222 000 00000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhch----HHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSAS----GAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNML 221 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~----~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l 221 (426)
. ...+..+.||||||+......... ...+..++.. ..+|++++|+|+..++.... .
T Consensus 74 --~------------~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-----~ 134 (223)
T 4dhe_A 74 --G------------PAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD-----R 134 (223)
T ss_dssp --S------------CTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-----H
T ss_pred --c------------CCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-----H
Confidence 0 023478999999998653211111 1222233333 33689999999988665433 2
Q ss_pred HHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHh-hhhcCCceEEeecccCCC
Q 014354 222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALD-EFYKNLKSVGVSSVSGAG 300 (426)
Q Consensus 222 ~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~vv~vSA~~g~g 300 (426)
.++..+...++|+|+|+||+|+............+...... ... ......+++++||++|.|
T Consensus 135 ~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~-----------------~~~~~~~~~~~~~~~SA~~g~g 197 (223)
T 4dhe_A 135 RMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDA-----------------YRDAGYAGKLTVQLFSALKRTG 197 (223)
T ss_dssp HHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHH-----------------HHHHTCCSCEEEEEEBTTTTBS
T ss_pred HHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHh-----------------hhhcccCCCCeEEEeecCCCcC
Confidence 33455666789999999999999876544333333211110 000 002456899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 014354 301 IEAYFKAVEESAQEF 315 (426)
Q Consensus 301 v~~l~~~l~~~~~~~ 315 (426)
+.+++++|.+.++..
T Consensus 198 v~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 198 LDDAHALIESWLRPA 212 (223)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhcCcc
Confidence 999999999887654
No 11
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.82 E-value=4.1e-20 Score=184.26 Aligned_cols=157 Identities=15% Similarity=0.058 Sum_probs=105.3
Q ss_pred CCCEEEEcCCCcccccch---hc---hHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEE
Q 014354 165 HLDYVLVDTPGQIEIFTW---SA---SGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAF 238 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~---~~---~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVl 238 (426)
..+++||||||+...... .. .-..+...+.....+++++|+|+...+..... +.++..+...+.|+|+|+
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~----~~i~~~~~~~~~~~i~V~ 204 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA----LKVAKEVDPQGQRTIGVI 204 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH----HHHHHHHCTTCTTEEEEE
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH----HHHHHHhCcCCCceEEEe
Confidence 478999999998763210 00 11223333333456788888998765544332 223444556689999999
Q ss_pred ecCCCCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHHHh
Q 014354 239 NKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFME 317 (426)
Q Consensus 239 NKiDl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~~ 317 (426)
||+|+..... ...+. . . .......++.+++++||++|.|+.++++++.. +.++
T Consensus 205 NK~Dl~~~~~~~~~~~---~---~-----------------~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~---e~~~ 258 (353)
T 2x2e_A 205 TKLDLMDEGTDARDVL---E---N-----------------KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA---ERKF 258 (353)
T ss_dssp ECGGGSCTTCCCHHHH---T---T-----------------CSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH---HHHH
T ss_pred ccccccCcchhHHHHH---h---C-----------------CcccccCCceEEEeCCcccccccccHHHHHHH---HHHH
Confidence 9999986542 11111 0 0 00000012356899999999999999999976 6667
Q ss_pred hhhhHHHhHHHHH---HHHHHHHHHHHHHHHHhhhcc
Q 014354 318 TYKADLDKRRAEK---QRLEEERQKENINKLRKDMEK 351 (426)
Q Consensus 318 ~~~~~~~~~~~~~---~~~~e~~re~~~~~l~~e~~~ 351 (426)
+|+...++....+ +.+.+.+|+++++++.+++||
T Consensus 259 f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~ 295 (353)
T 2x2e_A 259 FLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPG 295 (353)
T ss_dssp HHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777767766666 899999999999999999998
No 12
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.80 E-value=2.7e-18 Score=170.05 Aligned_cols=239 Identities=14% Similarity=0.159 Sum_probs=139.6
Q ss_pred CCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCc-
Q 014354 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGI- 141 (426)
Q Consensus 63 ~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i- 141 (426)
+....++.+++|+|+||||||||+|+|++...+.++.+.+.+.+|...... ......+..+ ..+...++..+
T Consensus 49 ~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~-~~~~~~~~~i------~~v~q~~~~~~~ 121 (337)
T 2qm8_A 49 LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTG-GSILGDKTRM------ARLAIDRNAFIR 121 (337)
T ss_dssp GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSC-CCSSCCGGGS------TTGGGCTTEEEE
T ss_pred CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccc-cchHHHhhhh------eeeccCcccccc
Confidence 344567889999999999999999999999888889999999887532211 0001111111 01111222221
Q ss_pred ----ccccccccccHHHHHHH-HHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhh
Q 014354 142 ----LTSLNLFTTKFDEVISL-IERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTF 216 (426)
Q Consensus 142 ----~~~~~~ls~~~~~~~~~-~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~ 216 (426)
+|+ +.+..+..... ......+.+++||||||+.... ..+ ...+|++++|+|+..+.....+
T Consensus 122 ~~~~~~~---l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~------~~v-----~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 122 PSPSSGT---LGGVAAKTRETMLLCEAAGFDVILVETVGVGQSE------TAV-----ADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp CCCCCSS---HHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH------HHH-----HTTSSEEEEEECSCC------C
T ss_pred cCccccc---ccchHHHHHHHHHHHhcCCCCEEEEECCCCCcch------hhH-----HhhCCEEEEEEcCCCcccHHHH
Confidence 121 11111111111 1112467999999999997641 111 2467999999998643221111
Q ss_pred hhhHHHHHHHHhhccCCeEEEEecCCCCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh--hcCCceEEe
Q 014354 217 MSNMLYACSILYKTRLPLVLAFNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGV 293 (426)
Q Consensus 217 ~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~vv~v 293 (426)
... ..++|.++|+||+|+..... .....+.+.. . +..+ ... ..+.+++++
T Consensus 188 ~~~---------i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~---a--------------~~l~-~~~~~~~~~~vl~~ 240 (337)
T 2qm8_A 188 KKG---------IFELADMIAVNKADDGDGERRASAAASEYRA---A--------------LHIL-TPPSATWTPPVVTI 240 (337)
T ss_dssp CTT---------HHHHCSEEEEECCSTTCCHHHHHHHHHHHHH---H--------------HTTB-CCSBTTBCCCEEEE
T ss_pred HHH---------HhccccEEEEEchhccCchhHHHHHHHHHHH---H--------------HHhc-cccccCCCCCEEEE
Confidence 100 12457899999999865332 2222222211 0 0000 000 013579999
Q ss_pred ecccCCCHHHHHHHHHHHHHHHH--hhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014354 294 SSVSGAGIEAYFKAVEESAQEFM--ETYKADLDKRRAEKQRLEEERQKENINKLRKDMEK 351 (426)
Q Consensus 294 SA~~g~gv~~l~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~ 351 (426)
||++|.|+++|++.|.+..+... ..| .+..+ ....+++.+.+|+++++++.++.+.
T Consensus 241 Sal~g~gi~~L~~~I~~~~~~~~~~~~~-~~~r~-~~~~~~~~~~i~~~~~~~~~~~~~~ 298 (337)
T 2qm8_A 241 SGLHGKGLDSLWSRIEDHRSKLTATGEI-AGKRR-EQDVKWMWALVHERLHQRLVGSAEV 298 (337)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHHHTTHH-HHHHH-HHHHHHHHHHHHHHHHHHHTSSHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHhCcHH-HHHHH-HHHHHHHHHHHHHHHHHHHHhCcch
Confidence 99999999999999998776322 112 23333 3448899999999999999987654
No 13
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.80 E-value=1.7e-19 Score=176.12 Aligned_cols=157 Identities=13% Similarity=0.077 Sum_probs=100.1
Q ss_pred CCCEEEEcCCCcccccch---hchHHHHHHHHHh--cCCcEEEEEEeC-CCCCCchhhhhhHHHHHHHHhhccCCeEEEE
Q 014354 165 HLDYVLVDTPGQIEIFTW---SASGAIITEAFAS--TFPTVVTYVVDT-PRSANPMTFMSNMLYACSILYKTRLPLVLAF 238 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~---~~~~~~l~~~~~~--~~~d~vl~VVDa-~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVl 238 (426)
..+++||||||+.+.... ......+...... ..+|++++|+|+ ......... ..++..+...+.|+|+|+
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~----~~i~~~~~~~~~~~i~v~ 205 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA----LQLAKEVDPEGKRTIGVI 205 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH----HHHHHHHCSSCSSEEEEE
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH----HHHHHHhCCCCCcEEEEE
Confidence 478999999999752110 1112222222211 357999999997 444433221 234455566789999999
Q ss_pred ecCCCCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeeccc---CCCHHHHHHHHHHHHH
Q 014354 239 NKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVS---GAGIEAYFKAVEESAQ 313 (426)
Q Consensus 239 NKiDl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~---g~gv~~l~~~l~~~~~ 313 (426)
||+|+..... ..++.. .. +..+ ..+.+++.+||.+ |.|+.++++.+.+.++
T Consensus 206 NK~Dl~~~~~~~~~~~~------~~------------------~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 206 TKLDLMDKGTDAMEVLT------GR------------------VIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp ECTTSSCSSCCCHHHHT------TS------------------SSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred cCcccCCcchHHHHHHh------CC------------------CccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 9999987543 111111 00 0001 2334566777777 8999999999999999
Q ss_pred HHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 014354 314 EFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKS 352 (426)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~~ 352 (426)
..++ |+ +..++...++...+ +|+++++++.+++||.
T Consensus 262 ~~~~-~~-~~~~~~~~~~l~~~-lre~l~~~~~~elP~~ 297 (315)
T 1jwy_B 262 NHPI-YK-SIANRSGTAYLSKT-LNKLLMFHIRDTLPDL 297 (315)
T ss_dssp TCTT-GG-GSGGGCSHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCc-cc-cchhccCHHHHHHH-HHHHHHHHHHHHhHHH
Confidence 8777 54 45566666666664 9999999999999986
No 14
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.79 E-value=1.6e-18 Score=156.47 Aligned_cols=170 Identities=15% Similarity=0.110 Sum_probs=102.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..+.++|+|+|.+|||||||+|+|++..+.. .+...++++ .. ....
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------~~~~~~~~t-~~--------------------~~~~-- 65 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLA-----------RTSSKPGKT-QT--------------------LNFY-- 65 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------------------CC--------------------EEEE--
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCcc-----------ccCCCCCce-ee--------------------EEEE--
Confidence 3466899999999999999999999875221 011112111 00 0000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh----chHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS----ASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNM 220 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~----~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~ 220 (426)
.-+.++.||||||+....... .........+.. ..++++++|+|+........
T Consensus 66 -----------------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~----- 123 (195)
T 1svi_A 66 -----------------IINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDD----- 123 (195)
T ss_dssp -----------------EETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-----
T ss_pred -----------------EECCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHH-----
Confidence 012479999999975431110 011112222222 23489999999987665443
Q ss_pred HHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC
Q 014354 221 LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300 (426)
Q Consensus 221 l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g 300 (426)
...+..+...++|+++|+||+|+............+.. . ++ .....+++++||++|.|
T Consensus 124 ~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~---~--------------~~-----~~~~~~~~~~Sa~~~~g 181 (195)
T 1svi_A 124 VQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQ---T--------------LN-----IDPEDELILFSSETKKG 181 (195)
T ss_dssp HHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHH---H--------------HT-----CCTTSEEEECCTTTCTT
T ss_pred HHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHH---H--------------Hc-----ccCCCceEEEEccCCCC
Confidence 22234455678999999999999987654333322221 1 00 12346899999999999
Q ss_pred HHHHHHHHHHHHH
Q 014354 301 IEAYFKAVEESAQ 313 (426)
Q Consensus 301 v~~l~~~l~~~~~ 313 (426)
+.+++++|.+.++
T Consensus 182 v~~l~~~l~~~l~ 194 (195)
T 1svi_A 182 KDEAWGAIKKMIN 194 (195)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987653
No 15
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.79 E-value=6.8e-19 Score=189.40 Aligned_cols=157 Identities=13% Similarity=0.029 Sum_probs=110.6
Q ss_pred CCCEEEEcCCCcccccc----h---hchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEE
Q 014354 165 HLDYVLVDTPGQIEIFT----W---SASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLA 237 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~----~---~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlV 237 (426)
..+++||||||+..... . ..... ++..+....+|++++|+|+.......+. +.++..+...+.|+|+|
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~-lv~~yi~~~aDlIL~VVDAs~~~~~~d~----l~ll~~L~~~g~pvIlV 223 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRD-MLMQFVTKENCLILAVSPANSDLANSDA----LKIAKEVDPQGQRTIGV 223 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHH-HHHHHHTSTTEEEEEEEETTSCSSSCHH----HHHHHHHCTTCSSEEEE
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHH-HHHHHHhcCCcEEEEEEcCCCCcchhHH----HHHHHHHHhcCCCEEEE
Confidence 46899999999977311 0 12222 3333333668999999999987766542 23455566778999999
Q ss_pred EecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH---HHHH
Q 014354 238 FNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE---SAQE 314 (426)
Q Consensus 238 lNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~---~~~~ 314 (426)
+||+|++....... .+. . ...+.-..++.+++++||++|.|+++|++++.+ .+++
T Consensus 224 lNKiDlv~~~~~~~---~il---~----------------~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe 281 (772)
T 3zvr_A 224 ITKLDLMDEGTDAR---DVL---E----------------NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLS 281 (772)
T ss_dssp EECTTSSCTTCCSH---HHH---T----------------TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHH
T ss_pred EeCcccCCcchhhH---HHH---H----------------HHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccC
Confidence 99999997643211 010 0 000000124567999999999999999999987 4666
Q ss_pred HHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014354 315 FMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEK 351 (426)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~ 351 (426)
.+++ +..+++..++.+.+.+|++++.++++++||
T Consensus 282 ~P~y---d~ltDr~g~~~LaEiLrEkL~~hi~~ELP~ 315 (772)
T 3zvr_A 282 HPSY---RHLADRMGTPYLQKVLNQQLTNHIRDTLPG 315 (772)
T ss_dssp CTTT---GGGGGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Ccch---hhhhhcccHHHHHHHHHHHHHHHHHhhCcc
Confidence 5554 556788889999999999999999999999
No 16
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.78 E-value=3e-19 Score=169.88 Aligned_cols=211 Identities=15% Similarity=0.157 Sum_probs=113.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+|+|++|||||||+|+|++..... ....+.+++.. . ..+.+.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~------------~~~~~~~~t~~---~--------------~~~~~~--- 67 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFE------------SKLGSQTLTKT---C--------------SKSQGS--- 67 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSC------------CCTTSCCCCCS---C--------------EEEEEE---
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcc------------cCCCCCceeee---e--------------EEEEEE---
Confidence 456899999999999999999999876322 11111101000 0 001111
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHH---HHHHHHHh--cCCcEEEEEEeCCCCCCchhhhhhHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA---IITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNML 221 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~---~l~~~~~~--~~~d~vl~VVDa~~~~~~~~~~~~~l 221 (426)
..+.++.||||||+.++. ..... .+...+.. ..+|++|+|+|+.. +.... .
T Consensus 68 ----------------~~~~~i~iiDTpG~~~~~--~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~-----~ 123 (260)
T 2xtp_A 68 ----------------WGNREIVIIDTPDMFSWK--DHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQD-----Q 123 (260)
T ss_dssp ----------------ETTEEEEEEECCGGGGSS--CCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHH-----H
T ss_pred ----------------eCCCEEEEEECcCCCCCC--CCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHH-----H
Confidence 234689999999998753 22222 22332222 45899999999985 44332 1
Q ss_pred HHHHHHhhc-----cCCeEEEEe-cCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhc-CCceEEee
Q 014354 222 YACSILYKT-----RLPLVLAFN-KTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK-NLKSVGVS 294 (426)
Q Consensus 222 ~~~~~l~~~-----~~P~IlVlN-KiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~vv~vS 294 (426)
.++..+... ..|.|+|+| |+|+.... ...+..... ......+.+.++ ..+. +.+ +++|
T Consensus 124 ~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~---------~~~~~~~~~~~~----~~~~~~~~-~~~S 188 (260)
T 2xtp_A 124 QAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSD---------NKALSKLVAACG----GRICAFNN-RAEG 188 (260)
T ss_dssp HHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCC---------CHHHHHHHHHTT----TCEEECCT-TCCH
T ss_pred HHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcc---------hHHHHHHHHHhC----CeEEEecC-cccc
Confidence 222223322 678888888 99998542 222211000 000000111111 1111 223 8899
Q ss_pred cccCCCHHHHHHHHHHHHHHHH-hhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 014354 295 SVSGAGIEAYFKAVEESAQEFM-ETYKADLDKRRAEKQRLEEERQKENINKLRKDM 349 (426)
Q Consensus 295 A~~g~gv~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~ 349 (426)
|++|.|+.+++++|...++... ++|+.+..+..+. +...+..++++...+.+++
T Consensus 189 A~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 243 (260)
T 2xtp_A 189 SNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQR-SKCGPVGSDERVKEFKQSL 243 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC--------------CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHH-HHhhhhhHHHHHHHHHHHH
Confidence 9999999999999999998876 6788777766665 3333444444444444443
No 17
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.78 E-value=5.4e-19 Score=156.15 Aligned_cols=160 Identities=24% Similarity=0.279 Sum_probs=95.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..+|+|+|++|||||||+|+|++..... ...|..+ ++ ...+.+.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~-------------~~~~~~t-~~-----------------~~~~~~~----- 46 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYI-------------GNWPGVT-VE-----------------KKEGEFE----- 46 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSC-------------C-----C-CC-----------------CCEEEEE-----
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeec-------------cCCCCcc-ee-----------------eeEEEEE-----
Confidence 3689999999999999999999875321 2222211 00 0001010
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHH-HHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITE-AFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~-~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
..+..+.+|||||+.++.... ....+.. .+....++++++|+|+.... . ...++..+
T Consensus 47 --------------~~~~~l~i~Dt~G~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~----~~~~~~~~ 104 (165)
T 2wji_A 47 --------------YNGEKFKVVDLPGVYSLTANS-IDEIIARDYIINEKPDLVVNIVDATALE---R----NLYLTLQL 104 (165)
T ss_dssp --------------ETTEEEEEEECCCCSCSSSSS-HHHHHHHHHHHHHCCSEEEEEEETTCHH---H----HHHHHHHH
T ss_pred --------------ECCcEEEEEECCCcccCCCcc-hhHHHHHHHHhcCCCCEEEEEecCCchh---H----hHHHHHHH
Confidence 123578999999998753221 1222222 33334689999999986521 1 11223334
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...++|+|+|+||+|+........ ....+ .+. + ..+++++||++|.|+.+++++
T Consensus 105 ~~~~~p~ilv~nK~Dl~~~~~~~~---~~~~~--------------~~~--------~-~~~~~~~SA~~~~~v~~l~~~ 158 (165)
T 2wji_A 105 MEMGANLLLALNKMDLAKSLGIEI---DVDKL--------------EKI--------L-GVKVVPLSAAKKMGIEELKKA 158 (165)
T ss_dssp HHTTCCEEEEEECHHHHHHTTCCC---CHHHH--------------HHH--------H-TSCEEECBGGGTBSHHHHHHH
T ss_pred HhcCCCEEEEEEchHhccccChhh---HHHHH--------------HHH--------h-CCCEEEEEcCCCCCHHHHHHH
Confidence 456899999999999753321100 01111 111 1 257999999999999999999
Q ss_pred HHHHH
Q 014354 308 VEESA 312 (426)
Q Consensus 308 l~~~~ 312 (426)
|.+.+
T Consensus 159 l~~~~ 163 (165)
T 2wji_A 159 ISIAV 163 (165)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87653
No 18
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.78 E-value=1.7e-19 Score=172.02 Aligned_cols=159 Identities=19% Similarity=0.240 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
++|+|+|.||||||||+|+|++.... +.+.|+.+ ++ .. .+.+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~-------------v~~~pg~T-v~---~~--------------~~~~~------ 44 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQR-------------VGNWPGVT-VE---KK--------------TGEFL------ 44 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEE-------------EEECTTSS-SE---EE--------------EEEEE------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC-------------ccCCCCce-EE---EE--------------EEEEE------
Confidence 47999999999999999999987532 22333332 10 00 01111
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh---chHHHHHH-HHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS---ASGAIITE-AFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~---~~~~~l~~-~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
..+..+.||||||+..+.... .....+.. .+....+|++|+|+|++.. .. .++...
T Consensus 45 -------------~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~---~~----~~~l~~ 104 (256)
T 3iby_A 45 -------------LGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL---ER----HLYLTS 104 (256)
T ss_dssp -------------ETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH---HH----HHHHHH
T ss_pred -------------ECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc---hh----HHHHHH
Confidence 133588999999998764221 22223333 3334568999999999751 11 133445
Q ss_pred HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
.+...++|+|+|+||+|+......... ...+. ... ..++|++||++|.|+++++
T Consensus 105 ~l~~~~~pvilv~NK~Dl~~~~~~~~~---~~~l~----------------------~~l-g~~vi~~SA~~g~gi~el~ 158 (256)
T 3iby_A 105 QLFELGKPVVVALNMMDIAEHRGISID---TEKLE----------------------SLL-GCSVIPIQAHKNIGIPALQ 158 (256)
T ss_dssp HHTTSCSCEEEEEECHHHHHHTTCEEC---HHHHH----------------------HHH-CSCEEECBGGGTBSHHHHH
T ss_pred HHHHcCCCEEEEEEChhcCCcCCcHHH---HHHHH----------------------HHc-CCCEEEEECCCCCCHHHHH
Confidence 566779999999999997654321101 11111 111 3689999999999999999
Q ss_pred HHHHHH
Q 014354 306 KAVEES 311 (426)
Q Consensus 306 ~~l~~~ 311 (426)
++|.+.
T Consensus 159 ~~i~~~ 164 (256)
T 3iby_A 159 QSLLHC 164 (256)
T ss_dssp HHHHTC
T ss_pred HHHHhh
Confidence 999876
No 19
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.77 E-value=9.6e-19 Score=168.22 Aligned_cols=160 Identities=21% Similarity=0.323 Sum_probs=101.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..+|+|+|.||||||||+|+|++.... +.+.|+++ ++ .. .+.+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-------------v~~~pg~t-v~---~~--------------~~~~~----- 46 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-------------VGNWPGVT-VE---RK--------------SGLVK----- 46 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-------------CCSSSCCC-CS---CE--------------EEECT-----
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-------------ccCCCCCc-EE---EE--------------EEEEe-----
Confidence 468999999999999999999987532 33444333 11 00 01111
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHH-HHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITE-AFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~-~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
. +..+.||||||+..+.... ....+.. .+....+|++++|+|++... . .+.+...+
T Consensus 47 --------------~-~~~l~l~DtpG~~~~~~~~-~~e~v~~~~~~~~~~d~vi~V~D~t~~e---~----~~~~~~~l 103 (272)
T 3b1v_A 47 --------------K-NKDLEIQDLPGIYSMSPYS-PEAKVARDYLLSQRADSILNVVDATNLE---R----NLYLTTQL 103 (272)
T ss_dssp --------------T-CTTEEEEECCCCSCSSCSS-HHHHHHHHHHHTTCCSEEEEEEEGGGHH---H----HHHHHHHH
T ss_pred --------------c-CCeEEEEECCCcCccCCCC-hHHHHHHHHHhcCCCCEEEEEecCCchH---h----HHHHHHHH
Confidence 1 4689999999998763322 2223333 33334689999999996521 1 12233344
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...++|+|+|+||+|+....... .....+ .+. . ..+++++||++|.|+.+++++
T Consensus 104 ~~~~~p~ilv~NK~Dl~~~~~~~---~~~~~l--------------~~~--------l-g~~vi~~SA~~g~gi~el~~~ 157 (272)
T 3b1v_A 104 IETGIPVTIALNMIDVLDGQGKK---INVDKL--------------SYH--------L-GVPVVATSALKQTGVDQVVKK 157 (272)
T ss_dssp HHTCSCEEEEEECHHHHHHTTCC---CCHHHH--------------HHH--------H-TSCEEECBTTTTBSHHHHHHH
T ss_pred HhcCCCEEEEEEChhhCCcCCcH---HHHHHH--------------HHH--------c-CCCEEEEEccCCCCHHHHHHH
Confidence 55789999999999975432110 011111 111 1 257999999999999999999
Q ss_pred HHHHHH
Q 014354 308 VEESAQ 313 (426)
Q Consensus 308 l~~~~~ 313 (426)
|.+.+.
T Consensus 158 i~~~~~ 163 (272)
T 3b1v_A 158 AAHTTT 163 (272)
T ss_dssp HHHSCT
T ss_pred HHHHHh
Confidence 987653
No 20
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.77 E-value=4.2e-19 Score=169.41 Aligned_cols=162 Identities=23% Similarity=0.262 Sum_probs=103.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|.||||||||+|+|++.... +...|+.+ ++.. .+.+.
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~-------------~~~~pg~t-v~~~-----------------~~~~~---- 48 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY-------------VANWPGVT-VEKK-----------------EGVFT---- 48 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE-------------EEECTTSC-CEEE-----------------EEEEE----
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc-------------ccCCCCce-EEEE-----------------EEEEE----
Confidence 4478999999999999999999987643 22223222 1100 01111
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHH-HHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIIT-EAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~-~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
..+..+.||||||+..+..... ...+. ..+....+|++++|+|++... . .++....
T Consensus 49 ---------------~~~~~~~l~DtpG~~~~~~~~~-~e~v~~~~~~~~~~d~ii~V~D~t~~~---~----~~~~~~~ 105 (258)
T 3a1s_A 49 ---------------YKGYTINLIDLPGTYSLGYSSI-DEKIARDYLLKGDADLVILVADSVNPE---Q----SLYLLLE 105 (258)
T ss_dssp ---------------ETTEEEEEEECCCCSSCCSSSH-HHHHHHHHHHHSCCSEEEEEEETTSCH---H----HHHHHHH
T ss_pred ---------------ECCeEEEEEECCCcCccCCCCH-HHHHHHHHHhhcCCCEEEEEeCCCchh---h----HHHHHHH
Confidence 1346899999999987643222 22233 333345789999999997632 1 1233344
Q ss_pred HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
+...++|+|+|+||+|+....... .....+ .+ .+ ..+++++||++|.|+.++++
T Consensus 106 l~~~~~pvilv~NK~Dl~~~~~i~---~~~~~l--------------~~--------~l-g~~vi~~SA~~g~gi~el~~ 159 (258)
T 3a1s_A 106 ILEMEKKVILAMTAIDEAKKTGMK---IDRYEL--------------QK--------HL-GIPVVFTSSVTGEGLEELKE 159 (258)
T ss_dssp HHTTTCCEEEEEECHHHHHHTTCC---BCHHHH--------------HH--------HH-CSCEEECCTTTCTTHHHHHH
T ss_pred HHhcCCCEEEEEECcCCCCccchH---HHHHHH--------------HH--------Hc-CCCEEEEEeeCCcCHHHHHH
Confidence 556789999999999975432211 011111 11 11 26899999999999999999
Q ss_pred HHHHHHH
Q 014354 307 AVEESAQ 313 (426)
Q Consensus 307 ~l~~~~~ 313 (426)
+|.+.+.
T Consensus 160 ~i~~~~~ 166 (258)
T 3a1s_A 160 KIVEYAQ 166 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9988765
No 21
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.77 E-value=2.6e-18 Score=152.39 Aligned_cols=167 Identities=19% Similarity=0.253 Sum_probs=102.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..+.++|+|+|.+|||||||+++|++..+... ..+..+ .+. ....+.
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-------------~~~~~~-~~~-----------------~~~~~~-- 51 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQ-------------EAGGIT-QHI-----------------GAYQVT-- 51 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCS-------------SCCSSS-TTC-----------------CCCEEE--
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccC-------------CCCcee-Eee-----------------eEEEEE--
Confidence 34678999999999999999999998764421 111111 000 000000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
..+..+.||||||+.++..... .....+|++++|+|+........ +..+.
T Consensus 52 -----------------~~~~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~~~~~-----~~~l~ 101 (178)
T 2lkc_A 52 -----------------VNDKKITFLDTPGHEAFTTMRA--------RGAQVTDIVILVVAADDGVMPQT-----VEAIN 101 (178)
T ss_dssp -----------------ETTEEEEESCCCSSSSSSCSCC--------SSCCCCCEEEEEEETTCCCCHHH-----HHHHH
T ss_pred -----------------eCCceEEEEECCCCHHHHHHHH--------HHHhhCCEEEEEEECCCCCcHHH-----HHHHH
Confidence 1335788999999977532111 01134799999999877654433 22334
Q ss_pred HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
.+...++|+++|+||+|+..... ..+...+. . .......+....+++++||++|.|+.+++
T Consensus 102 ~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~----~--------------~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 162 (178)
T 2lkc_A 102 HAKAANVPIIVAINKMDKPEANP-DRVMQELM----E--------------YNLVPEEWGGDTIFCKLSAKTKEGLDHLL 162 (178)
T ss_dssp HHGGGSCCEEEEEETTTSSCSCH-HHHHHHHT----T--------------TTCCBTTTTSSEEEEECCSSSSHHHHHHH
T ss_pred HHHhCCCCEEEEEECccCCcCCH-HHHHHHHH----h--------------cCcChhHcCCcccEEEEecCCCCCHHHHH
Confidence 45566899999999999986421 11111111 0 00000111123579999999999999999
Q ss_pred HHHHHHHHH
Q 014354 306 KAVEESAQE 314 (426)
Q Consensus 306 ~~l~~~~~~ 314 (426)
++|.+.+..
T Consensus 163 ~~l~~~~~~ 171 (178)
T 2lkc_A 163 EMILLVSEM 171 (178)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhh
Confidence 999887654
No 22
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.77 E-value=9.5e-18 Score=156.20 Aligned_cols=177 Identities=16% Similarity=0.214 Sum_probs=103.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..+.++|+|+|.+|||||||+|+|++..+. +...++++ +.. .....
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~-------------~~~~~~~t----~~~-----------------~~~~~ 71 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVD-------------VQSYSFTT----KNL-----------------YVGHF 71 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTCEE-------------EECC---------CE-----------------EEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCc-------------cCCCCCcc----eee-----------------eeeee
Confidence 356789999999999999999999987542 11122222 000 00000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhc--h-HHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA--S-GAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY 222 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~--~-~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~ 222 (426)
. ..+..+.||||||+.+...... . ...+... ...+|++|+|+|+....+... .....
T Consensus 72 ~----------------~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~--~~~~~ 131 (228)
T 2qu8_A 72 D----------------HKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL--AHINGVILFIIDISEQCGLTI--KEQIN 131 (228)
T ss_dssp E----------------ETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH--HTSSEEEEEEEETTCTTSSCH--HHHHH
T ss_pred e----------------cCCCeEEEEECCCCcCcccchhhhHHHHHHHHh--hccccEEEEEEecccccCcch--HHHHH
Confidence 0 1235789999999965321111 0 1112211 245799999999987544321 11122
Q ss_pred HHHHHhhc--cCCeEEEEecCCCCChHhHHH-HHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC
Q 014354 223 ACSILYKT--RLPLVLAFNKTDVAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA 299 (426)
Q Consensus 223 ~~~~l~~~--~~P~IlVlNKiDl~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~ 299 (426)
++..+... ++|+++|+||+|+.....+.. ....+..+.. ......+++++||++|.
T Consensus 132 ~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~SA~~g~ 190 (228)
T 2qu8_A 132 LFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILD---------------------NVKNPIKFSSFSTLTGV 190 (228)
T ss_dssp HHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHH---------------------HCCSCEEEEECCTTTCT
T ss_pred HHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHH---------------------hcCCCceEEEEecccCC
Confidence 33334443 899999999999987543211 1111111110 11112579999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 014354 300 GIEAYFKAVEESAQEFME 317 (426)
Q Consensus 300 gv~~l~~~l~~~~~~~~~ 317 (426)
|+.+++++|.+.+....+
T Consensus 191 gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 191 GVEQAKITACELLKNDQA 208 (228)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999998876554
No 23
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.77 E-value=1e-18 Score=156.36 Aligned_cols=170 Identities=16% Similarity=0.170 Sum_probs=98.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|.+|||||||+|+|++...... .+.++...... .+..
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~-----------------~~~~---- 47 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDE--------------YDPTIEDSYRK-----------------QVVI---- 47 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCC--------------CCTTCCEEEEE-----------------EEEE----
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCC--------------CCCCchheEEE-----------------EEEE----
Confidence 346899999999999999999998764321 11111000000 0000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
......+.||||||+.++.. ... ..+ ..+|++++|+|+...........-...+....
T Consensus 48 --------------~~~~~~~~i~Dt~G~~~~~~---~~~---~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 105 (189)
T 4dsu_A 48 --------------DGETCLLDILDTAGQEEYSA---MRD---QYM--RTGEGFLCVFAINNTKSFEDIHHYREQIKRVK 105 (189)
T ss_dssp --------------TTEEEEEEEEECCCC---CT---THH---HHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT
T ss_pred --------------CCcEEEEEEEECCCcHHHHH---HHH---HHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 01234678999999877521 111 112 22689999999875322111110001111212
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...+.|+++|+||+|+............+. . .+ ..+++++||++|.|+.+++.+
T Consensus 106 ~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~---~----------------------~~-~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 106 DSEDVPMVLVGNKCDLPSRTVDTKQAQDLA---R----------------------SY-GIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp TCSCCCEEEEEECTTSSSCSSCHHHHHHHH---H----------------------HH-TCCEEECCTTTCTTHHHHHHH
T ss_pred CCCCCcEEEEEECccCcccccCHHHHHHHH---H----------------------Hc-CCeEEEEeCCCCCCHHHHHHH
Confidence 235799999999999985432211211111 1 11 257999999999999999999
Q ss_pred HHHHHHHHHhhhh
Q 014354 308 VEESAQEFMETYK 320 (426)
Q Consensus 308 l~~~~~~~~~~~~ 320 (426)
|.+.+......++
T Consensus 160 l~~~~~~~~~~~~ 172 (189)
T 4dsu_A 160 LVREIRKHKEKMS 172 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcc
Confidence 9998877655443
No 24
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.77 E-value=2.4e-18 Score=155.58 Aligned_cols=168 Identities=16% Similarity=0.222 Sum_probs=100.4
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (426)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~ 144 (426)
...+.++|+|+|.+|||||||+++|++..+.. +. +..+..+. ...
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~------------~~-~~~t~~~~----------------------~~~ 57 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSS------------KH-ITATVGYN----------------------VET 57 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----------------C-CCCCSSEE----------------------EEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcc------------cc-ccccccee----------------------EEE
Confidence 34566899999999999999999999876442 00 00011000 000
Q ss_pred cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
.. .....+.||||||+.++..... .. ...+|++|+|+|+....+. ......+.
T Consensus 58 ~~----------------~~~~~~~i~Dt~G~~~~~~~~~------~~--~~~~d~ii~v~D~~~~~s~---~~~~~~~~ 110 (199)
T 4bas_A 58 FE----------------KGRVAFTVFDMGGAKKFRGLWE------TY--YDNIDAVIFVVDSSDHLRL---CVVKSEIQ 110 (199)
T ss_dssp EE----------------ETTEEEEEEEECCSGGGGGGGG------GG--CTTCSEEEEEEETTCGGGH---HHHHHHHH
T ss_pred EE----------------eCCEEEEEEECCCCHhHHHHHH------HH--HhcCCEEEEEEECCcHHHH---HHHHHHHH
Confidence 00 2446899999999977521111 01 1347999999999764322 11111111
Q ss_pred HHHhh----------ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEee
Q 014354 225 SILYK----------TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVS 294 (426)
Q Consensus 225 ~~l~~----------~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vS 294 (426)
..+.. .++|+|||+||+|+.......++...+. +.. .. .....+++++|
T Consensus 111 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-~~~------------------~~--~~~~~~~~~~S 169 (199)
T 4bas_A 111 AMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILD-LTT------------------LM--GDHPFVIFASN 169 (199)
T ss_dssp HHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHT-HHH------------------HH--TTSCEEEEECB
T ss_pred HHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhc-chh------------------hc--cCCeeEEEEee
Confidence 11111 2899999999999987643323322221 000 00 01345799999
Q ss_pred cccCCCHHHHHHHHHHHHHHH
Q 014354 295 SVSGAGIEAYFKAVEESAQEF 315 (426)
Q Consensus 295 A~~g~gv~~l~~~l~~~~~~~ 315 (426)
|++|.||.+++++|.+.+...
T Consensus 170 a~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 170 GLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp TTTTBTHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHHH
Confidence 999999999999999887654
No 25
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.76 E-value=1.7e-18 Score=177.27 Aligned_cols=179 Identities=15% Similarity=0.206 Sum_probs=111.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
....+|+|+|.||||||||+|+|++..+.. ++..++++ ++.+ ...+.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~------------~~~~~gtT----~d~~--------------~~~~~--- 219 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI------------VSNVAGTT----RDAV--------------DTSFT--- 219 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEE------------EC-------------C--------------CEEEE---
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCcee------------ecCCCCce----eeee--------------EEEEE---
Confidence 356899999999999999999999876431 33344443 1111 00011
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh-c-hHHHHHHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-A-SGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~-~-~~~~l~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~ 223 (426)
..+..+.||||||+.+..... . ......... ....+|++++|+|+..+...++. .+
T Consensus 220 ----------------~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-----~~ 278 (436)
T 2hjg_A 220 ----------------YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-----RI 278 (436)
T ss_dssp ----------------ETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-----HH
T ss_pred ----------------ECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-----HH
Confidence 133569999999996542110 0 111112221 22347999999999988776552 34
Q ss_pred HHHHhhccCCeEEEEecCCCCChHhH--HHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354 224 CSILYKTRLPLVLAFNKTDVAQHEFA--LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (426)
Q Consensus 224 ~~~l~~~~~P~IlVlNKiDl~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv 301 (426)
+..+...++|+|+|+||+|+...... .++.+.+. +.+ .+..+.+++++||++|.|+
T Consensus 279 ~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~-----------------~~l-----~~~~~~~~~~~SA~tg~~v 336 (436)
T 2hjg_A 279 AGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIR-----------------DHF-----QFLDYAPILFMSALTKKRI 336 (436)
T ss_dssp HHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHH-----------------HHC-----GGGTTSCEEECCTTTCTTG
T ss_pred HHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHH-----------------Hhc-----ccCCCCCEEEEecccCCCH
Confidence 44455678999999999999875421 12222221 111 1234578999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 014354 302 EAYFKAVEESAQEFMETYKA 321 (426)
Q Consensus 302 ~~l~~~l~~~~~~~~~~~~~ 321 (426)
.++++.+.+.+......++.
T Consensus 337 ~~l~~~i~~~~~~~~~~~~t 356 (436)
T 2hjg_A 337 HTLMPAIIKASENHSLRVQT 356 (436)
T ss_dssp GGHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHHHHHHhhcCCCH
Confidence 99999999888765544443
No 26
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=5.1e-18 Score=152.56 Aligned_cols=167 Identities=17% Similarity=0.181 Sum_probs=96.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
++..+|+|+|.+|||||||+|+|++..+.. ..|.+. .. .....
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--------~~~t~~---~~--------------------------~~~~~ 56 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVH--------TSPTIG---SN--------------------------VEEIV 56 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEE--------EECCSC---SS--------------------------CEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc--------CcCCCc---cc--------------------------eEEEE
Confidence 356899999999999999999999765320 011110 00 00000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
..+..+.||||||+.++... . ...+ ..+|++++|+|+....+..... ..+...
T Consensus 57 ----------------~~~~~~~i~Dt~G~~~~~~~--~----~~~~--~~~d~ii~v~d~~~~~s~~~~~---~~~~~~ 109 (187)
T 1zj6_A 57 ----------------INNTRFLMWDIGGQESLRSS--W----NTYY--TNTEFVIVVVDSTDRERISVTR---EELYKM 109 (187)
T ss_dssp ----------------ETTEEEEEEECCC----CGG--G----HHHH--TTCCEEEEEEETTCTTTHHHHH---HHHHHH
T ss_pred ----------------ECCEEEEEEECCCCHhHHHH--H----HHHh--cCCCEEEEEEeCCCHHHHHHHH---HHHHHH
Confidence 13368899999999765211 1 1112 4579999999997754322211 111222
Q ss_pred Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCCCHH
Q 014354 227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~gv~ 302 (426)
+. ..++|+++|+||+|+.......++.+.+. .. .+ ....+++++||++|.|+.
T Consensus 110 ~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~---------------------~~--~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 110 LAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK---------------------LT--SIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp HTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHT---------------------GG--GCCSSCEEEEECBTTTTBTHH
T ss_pred HhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhC---------------------hh--hhcCCCcEEEEccCCCCcCHH
Confidence 22 25799999999999986432222221111 00 00 113479999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 014354 303 AYFKAVEESAQEFMETYK 320 (426)
Q Consensus 303 ~l~~~l~~~~~~~~~~~~ 320 (426)
+++++|.+.+...++.+|
T Consensus 167 ~l~~~l~~~~~~~~~~~~ 184 (187)
T 1zj6_A 167 QGLEWMMSRLKIRLEHHH 184 (187)
T ss_dssp HHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 999999998877665544
No 27
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.76 E-value=7.2e-18 Score=173.59 Aligned_cols=180 Identities=15% Similarity=0.198 Sum_probs=112.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
....+|+++|.+|+|||||+|+|++..... ++..++++ ++.+ ...+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~------------~~~~~gtt----~~~~--------------~~~~~--- 239 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI------------VSNVAGTT----RDAV--------------DTSFT--- 239 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEE------------ECC----------CTT--------------SEEEE---
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccc------------cCCCCCeE----EEEE--------------EEEEE---
Confidence 456899999999999999999999765321 33334333 1111 00011
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh--chHHHHHHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS--ASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~--~~~~~l~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~ 223 (426)
..+..+.||||||+.+..... .........+ ....+|++|+|+|+..++..++ ..+
T Consensus 240 ----------------~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~-----~~~ 298 (456)
T 4dcu_A 240 ----------------YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQD-----KRI 298 (456)
T ss_dssp ----------------ETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHH-----HHH
T ss_pred ----------------ECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHH-----HHH
Confidence 133579999999975532110 1111122222 2244799999999998877654 334
Q ss_pred HHHHhhccCCeEEEEecCCCCChHh--HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354 224 CSILYKTRLPLVLAFNKTDVAQHEF--ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (426)
Q Consensus 224 ~~~l~~~~~P~IlVlNKiDl~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv 301 (426)
+..+...++|+|||+||+|+..... ..+..+.+... + .+..+.+++++||++|.|+
T Consensus 299 ~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~-----------------~-----~~~~~~~~~~~SA~~g~gv 356 (456)
T 4dcu_A 299 AGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDH-----------------F-----QFLDYAPILFMSALTKKRI 356 (456)
T ss_dssp HHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHH-----------------C-----GGGTTSCEEECCTTTCTTG
T ss_pred HHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHh-----------------c-----ccCCCCCEEEEcCCCCcCH
Confidence 4556667899999999999986432 12222222110 0 2235678999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhH
Q 014354 302 EAYFKAVEESAQEFMETYKAD 322 (426)
Q Consensus 302 ~~l~~~l~~~~~~~~~~~~~~ 322 (426)
.+++.+|.+.+.......+..
T Consensus 357 ~~l~~~i~~~~~~~~~~~~t~ 377 (456)
T 4dcu_A 357 HTLMPAIIKASENHSLRVQTN 377 (456)
T ss_dssp GGHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHHHhcccCCHH
Confidence 999999999887765554433
No 28
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.76 E-value=2.9e-18 Score=175.72 Aligned_cols=164 Identities=18% Similarity=0.163 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
++|+|+|.||||||||+|+|++...+. +...|++| ++.. -+.+.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~------------v~~~~g~T----~d~~--------------~~~~~------ 45 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI------------VEDEEGVT----RDPV--------------QDTVE------ 45 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC------------------------------CCS--------------EEEEE------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce------------ecCCCCCc----ccee--------------eEEEE------
Confidence 579999999999999999999876432 33444443 2221 01111
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHH--HhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~--~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
..+..+.||||||+.... .......+.... ....+|++++|+|+..+.+..+. .+...+
T Consensus 46 -------------~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~-----~i~~~l 106 (439)
T 1mky_A 46 -------------WYGKTFKLVDTCGVFDNP-QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDE-----SLADFL 106 (439)
T ss_dssp -------------ETTEEEEEEECTTTTSSG-GGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHH-----HHHHHH
T ss_pred -------------ECCeEEEEEECCCccccc-cchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH-----HHHHHH
Confidence 234578999999997532 111112222211 12458999999999887765442 223345
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...++|++||+||+|+.... .......+ . . .+..+++++||++|.|+.+|+++
T Consensus 107 ~~~~~p~ilv~NK~D~~~~~----~~~~~~~~------------------~----~-lg~~~~~~iSA~~g~gv~~L~~~ 159 (439)
T 1mky_A 107 RKSTVDTILVANKAENLREF----EREVKPEL------------------Y----S-LGFGEPIPVSAEHNINLDTMLET 159 (439)
T ss_dssp HHHTCCEEEEEESCCSHHHH----HHHTHHHH------------------G----G-GSSCSCEECBTTTTBSHHHHHHH
T ss_pred HHcCCCEEEEEeCCCCcccc----HHHHHHHH------------------H----h-cCCCCEEEEeccCCCCHHHHHHH
Confidence 56789999999999975320 00000100 0 0 12336899999999999999999
Q ss_pred HHHHHHHH
Q 014354 308 VEESAQEF 315 (426)
Q Consensus 308 l~~~~~~~ 315 (426)
|...+++.
T Consensus 160 i~~~l~~~ 167 (439)
T 1mky_A 160 IIKKLEEK 167 (439)
T ss_dssp HHHHHHHT
T ss_pred HHHhcccc
Confidence 99888753
No 29
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.76 E-value=3.9e-19 Score=171.09 Aligned_cols=163 Identities=23% Similarity=0.282 Sum_probs=104.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
.++|+|+|.+|||||||+|+|++.... +...|+++ ++ .. .+.+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~-------------v~~~~g~t-~~---~~--------------~~~~~----- 46 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQR-------------VGNWAGVT-VE---RK--------------EGQFS----- 46 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEE-------------EEECTTSS-SE---EE--------------EEEEE-----
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcc-------------cCCCCCee-EE---EE--------------EEEEE-----
Confidence 478999999999999999999987532 23333332 10 00 01111
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccch---hchHHHHHHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW---SASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~---~~~~~~l~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
..+..+.||||||+.++... ......+...+ ....+|++|+|+|+.... ..++..
T Consensus 47 --------------~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~-------~~~~~~ 105 (274)
T 3i8s_A 47 --------------TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE-------RNLYLT 105 (274)
T ss_dssp --------------CSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHH-------HHHHHH
T ss_pred --------------eCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChH-------HHHHHH
Confidence 13467899999999886421 22333333333 345789999999997521 113344
Q ss_pred HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
..+...++|+|+|+||+|+......... ...+. ..+ ..+++++||++|.|+.++
T Consensus 106 ~~l~~~~~p~ivv~NK~Dl~~~~~~~~~---~~~l~----------------------~~l-g~~~i~~SA~~g~gi~el 159 (274)
T 3i8s_A 106 LQLLELGIPCIVALNMLDIAEKQNIRIE---IDALS----------------------ARL-GCPVIPLVSTRGRGIEAL 159 (274)
T ss_dssp HHHHHHTCCEEEEEECHHHHHHTTEEEC---HHHHH----------------------HHH-TSCEEECCCGGGHHHHHH
T ss_pred HHHHhcCCCEEEEEECccchhhhhHHHH---HHHHH----------------------Hhc-CCCEEEEEcCCCCCHHHH
Confidence 4556679999999999997654321100 11111 111 267999999999999999
Q ss_pred HHHHHHHHHH
Q 014354 305 FKAVEESAQE 314 (426)
Q Consensus 305 ~~~l~~~~~~ 314 (426)
+++|.+.++.
T Consensus 160 ~~~i~~~~~~ 169 (274)
T 3i8s_A 160 KLAIDRYKAN 169 (274)
T ss_dssp HHHHHTCCCC
T ss_pred HHHHHHHHhc
Confidence 9999876653
No 30
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.76 E-value=4.2e-18 Score=149.88 Aligned_cols=161 Identities=20% Similarity=0.245 Sum_probs=98.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
++..+|+|+|.+|||||||+|+|++..+.. ..|.+. +. .....
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--------~~~t~~-------~~----------------------~~~~~ 47 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT--------TIPTIG-------FN----------------------VETVT 47 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC--------CCCCSS-------EE----------------------EEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC--------cCCcCc-------cc----------------------eEEEE
Confidence 356889999999999999999998765421 001110 00 00000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
.....+.||||||+..+.... ... ...+|++++|+|+....+..... ..+...
T Consensus 48 ----------------~~~~~~~~~Dt~G~~~~~~~~------~~~--~~~~d~ii~v~d~~~~~s~~~~~---~~~~~~ 100 (171)
T 1upt_A 48 ----------------YKNLKFQVWDLGGLTSIRPYW------RCY--YSNTDAVIYVVDSCDRDRIGISK---SELVAM 100 (171)
T ss_dssp ----------------ETTEEEEEEEECCCGGGGGGG------GGG--CTTCSEEEEEEETTCCTTHHHHH---HHHHHH
T ss_pred ----------------ECCEEEEEEECCCChhhhHHH------HHH--hccCCEEEEEEECCCHHHHHHHH---HHHHHH
Confidence 124688999999997652110 001 13479999999997654322211 112222
Q ss_pred Hhh---ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 227 LYK---TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 227 l~~---~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
+.. .++|+++|+||+|+.......++...+. ..... ....+++++||++|.|+.+
T Consensus 101 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---------------------~~~~~-~~~~~~~~~Sa~~~~gi~~ 158 (171)
T 1upt_A 101 LEEEELRKAILVVFANKQDMEQAMTSSEMANSLG---------------------LPALK-DRKWQIFKTSATKGTGLDE 158 (171)
T ss_dssp HTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHT---------------------GGGCT-TSCEEEEECCTTTCTTHHH
T ss_pred HhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhC---------------------chhcc-CCceEEEECcCCCCcCHHH
Confidence 222 5799999999999987532222221111 00000 1234799999999999999
Q ss_pred HHHHHHHHHH
Q 014354 304 YFKAVEESAQ 313 (426)
Q Consensus 304 l~~~l~~~~~ 313 (426)
++++|.+.+.
T Consensus 159 l~~~l~~~i~ 168 (171)
T 1upt_A 159 AMEWLVETLK 168 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 31
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.76 E-value=2.1e-18 Score=151.04 Aligned_cols=163 Identities=12% Similarity=0.095 Sum_probs=94.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..+|+|+|.+|||||||+|+|++....... ..+........ +...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~--------------~~t~~~~~~~~-----------------~~~~---- 47 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY--------------DPTIEDSYRKQ-----------------VEVD---- 47 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSC--------------CCCSEEEEEEE-----------------EESS----
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCC--------------CCCccceEEEE-----------------EEEC----
Confidence 468999999999999999999986543211 11110000000 0000
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~ 228 (426)
.....+.||||||+.++.. .....+. .+|++++|+|+....+......-...+.....
T Consensus 48 --------------~~~~~~~l~D~~G~~~~~~------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 105 (167)
T 1c1y_A 48 --------------CQQCMLEILDTAGTEQFTA------MRDLYMK--NGQGFALVYSITAQSTFNDLQDLREQILRVKD 105 (167)
T ss_dssp --------------SCEEEEEEEEECSSCSSTT------HHHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC
T ss_pred --------------CEEEEEEEEECCChHHHHH------HHHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC
Confidence 1235789999999877521 1111222 36899999998753211111000011111112
Q ss_pred hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l 308 (426)
..++|+++|+||+|+....... ......+. ..+...+++++||++|.|+++++++|
T Consensus 106 ~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 106 TEDVPMILVGNKCDLEDERVVG--KEQGQNLA----------------------RQWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp CSCCCEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred cCCCcEEEEEECccccccccCC--HHHHHHHH----------------------HHccCCcEEEecCCCCCCHHHHHHHH
Confidence 3479999999999997643210 01111111 11235679999999999999999999
Q ss_pred HHHH
Q 014354 309 EESA 312 (426)
Q Consensus 309 ~~~~ 312 (426)
.+.+
T Consensus 162 ~~~i 165 (167)
T 1c1y_A 162 VRQI 165 (167)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 32
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.75 E-value=7.4e-18 Score=149.99 Aligned_cols=172 Identities=15% Similarity=0.094 Sum_probs=91.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+|+|.+|||||||++++++..+..... .+...... ..+..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~--------------~t~~~~~~-----------------~~~~~--- 51 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYV--------------PTVFDNFS-----------------ANVVV--- 51 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------------------CB-----------------CCCC----
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------------CeeeeeEE-----------------EEEEE---
Confidence 356789999999999999999999876432111 11100000 00000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
......+.||||||+.++..... . ....+|++++|+|+....+.... ...+...
T Consensus 52 ---------------~~~~~~~~i~Dt~G~~~~~~~~~------~--~~~~~d~~i~v~d~~~~~s~~~~---~~~~~~~ 105 (182)
T 3bwd_D 52 ---------------NGATVNLGLWDTAGQEDYNRLRP------L--SYRGADVFILAFSLISKASYENV---SKKWIPE 105 (182)
T ss_dssp ---------------------CEEECCCC-CTTTTTGG------G--GGTTCSEEEEEEETTCHHHHHHH---HHTHHHH
T ss_pred ---------------CCEEEEEEEEECCCChhhhhhHH------h--hccCCCEEEEEEECCCHHHHHHH---HHHHHHH
Confidence 02336788999999977521110 0 11347999999998653221111 0012222
Q ss_pred Hhh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 227 LYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 227 l~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
+.. .++|+++|+||+|+........... . ...+....+..+...++..+++++||++|.|+.++
T Consensus 106 ~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-----------~---~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (182)
T 3bwd_D 106 LKHYAPGVPIVLVGTKLDLRDDKQFFIDHP-----------G---AVPITTVQGEELKKLIGAPAYIECSSKSQENVKGV 171 (182)
T ss_dssp HHHHCTTCCEEEEEECHHHHTCHHHHHHC----------------CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHH
T ss_pred HHHhCCCCCEEEEEechhhhcCcccccccc-----------c---CCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHH
Confidence 222 3799999999999876542210000 0 00000000001111223357999999999999999
Q ss_pred HHHHHHHH
Q 014354 305 FKAVEESA 312 (426)
Q Consensus 305 ~~~l~~~~ 312 (426)
+++|.+.+
T Consensus 172 ~~~l~~~i 179 (182)
T 3bwd_D 172 FDAAIRVV 179 (182)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 33
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.75 E-value=2e-18 Score=153.86 Aligned_cols=158 Identities=18% Similarity=0.273 Sum_probs=95.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
++.+|+|+|++|||||||+|+|++...+. +...+.++ ++.. .+.+.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~------------~~~~~~~t----~~~~--------------~~~~~---- 48 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAI------------VTDIAGTT----RDVL--------------REHIH---- 48 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSC------------CCSSTTCC----CSCE--------------EEEEE----
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcce------------eeCCCCce----ecee--------------eEEEE----
Confidence 45789999999999999999999875331 23333332 0000 00010
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHH-HHHHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA-IITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~-~l~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
..+..+.+|||||+.+.. ..... .+...+ ....+|++++|+|++...+... ..++.
T Consensus 49 ---------------~~~~~~~l~Dt~G~~~~~--~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-----~~~~~ 106 (172)
T 2gj8_A 49 ---------------IDGMPLHIIDTAGLREAS--DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-----AEIWP 106 (172)
T ss_dssp ---------------ETTEEEEEEECCCCSCCS--SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-----HHHCH
T ss_pred ---------------ECCeEEEEEECCCcccch--hHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-----HHHHH
Confidence 123468899999997642 11111 111111 1245799999999987654322 11112
Q ss_pred HHh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354 226 ILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 226 ~l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~ 302 (426)
.+. ..++|+|+|+||+|+..... .+ + . ....+++++||++|.|+.
T Consensus 107 ~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~-------------------------~----~-~~~~~~~~~SA~~g~gv~ 154 (172)
T 2gj8_A 107 EFIARLPAKLPITVVRNKADITGETL--GM-------------------------S----E-VNGHALIRLSARTGEGVD 154 (172)
T ss_dssp HHHHHSCTTCCEEEEEECHHHHCCCC--EE-------------------------E----E-ETTEEEEECCTTTCTTHH
T ss_pred HHHHhcccCCCEEEEEECccCCcchh--hh-------------------------h----h-ccCCceEEEeCCCCCCHH
Confidence 222 23689999999999743210 00 0 0 123569999999999999
Q ss_pred HHHHHHHHHHH
Q 014354 303 AYFKAVEESAQ 313 (426)
Q Consensus 303 ~l~~~l~~~~~ 313 (426)
+++++|.+.+.
T Consensus 155 ~l~~~l~~~~~ 165 (172)
T 2gj8_A 155 VLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhh
Confidence 99999987654
No 34
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.74 E-value=4.2e-18 Score=151.89 Aligned_cols=166 Identities=15% Similarity=0.173 Sum_probs=97.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+|+|.+|||||||+|+|++..+... .+.++....... +..
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~-----------------~~~--- 61 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVED--------------YEPTKADSYRKK-----------------VVL--- 61 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCS--------------CCTTCCEEEEEE-----------------EEE---
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCc--------------CCCccceEEEEE-----------------EEE---
Confidence 3557999999999999999999998764321 111110000000 000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHH-HHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML-YACS 225 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l-~~~~ 225 (426)
....+.+.||||||+.++. ......+ ..+|++++|+|+......... ...+ .+..
T Consensus 62 ---------------~~~~~~~~l~Dt~G~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~ 117 (187)
T 2a9k_A 62 ---------------DGEEVQIDILDTAGQEDYA------AIRDNYF--RSGEGFLCVFSITEMESFAAT-ADFREQILR 117 (187)
T ss_dssp ---------------TTEEEEEEEEECCCTTCCH------HHHHHHH--HHCSEEEEEEETTCHHHHHHH-HHHHHHHHH
T ss_pred ---------------CCEEEEEEEEECCCCcccH------HHHHHHh--ccCCEEEEEEECcCHHHHHHH-HHHHHHHHH
Confidence 0123578999999987652 1111222 236899999999753221111 1111 1111
Q ss_pred HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
.....++|+++|+||+|+....... ......+.. . ...+++++||++|.|+.+++
T Consensus 118 ~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 118 VKEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAE---------------------Q--WNVNYVETSAKTRANVDKVF 172 (187)
T ss_dssp HHCCTTCCEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H--TTCEEEECCTTTCTTHHHHH
T ss_pred hcCCCCCCEEEEEECccccccCccC--HHHHHHHHH---------------------H--cCCeEEEeCCCCCCCHHHHH
Confidence 1123479999999999987543210 011111110 1 13579999999999999999
Q ss_pred HHHHHHHHHH
Q 014354 306 KAVEESAQEF 315 (426)
Q Consensus 306 ~~l~~~~~~~ 315 (426)
++|.+.+...
T Consensus 173 ~~l~~~i~~~ 182 (187)
T 2a9k_A 173 FDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887654
No 35
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.74 E-value=1.4e-18 Score=156.64 Aligned_cols=164 Identities=15% Similarity=0.215 Sum_probs=98.8
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (426)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~ 144 (426)
..++..+|+|+|.+|||||||+|+|++..+.... .| +..... ..
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-------------~~-t~~~~~----------------------~~ 61 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDM-------------IP-TVGFNM----------------------RK 61 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC-------------CC-CCSEEE----------------------EE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCcc-------------CC-CCceeE----------------------EE
Confidence 3455689999999999999999999987643211 00 110000 00
Q ss_pred cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
.. ..+..+.||||||+.++.. .....+ ..+|++++|+|+....+... ....+.
T Consensus 62 ~~----------------~~~~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~D~~~~~s~~~---~~~~~~ 114 (188)
T 1zd9_A 62 IT----------------KGNVTIKLWDIGGQPRFRS------MWERYC--RGVSAIVYMVDAADQEKIEA---SKNELH 114 (188)
T ss_dssp EE----------------ETTEEEEEEEECCSHHHHT------THHHHH--TTCSEEEEEEETTCGGGHHH---HHHHHH
T ss_pred EE----------------eCCEEEEEEECCCCHhHHH------HHHHHH--ccCCEEEEEEECCCHHHHHH---HHHHHH
Confidence 00 2346889999999876421 111112 45799999999975432211 111112
Q ss_pred HHHh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354 225 SILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (426)
Q Consensus 225 ~~l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv 301 (426)
..+. ..++|++||+||+|+.......++...+. ... ......+++++||++|.|+
T Consensus 115 ~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~~~~SA~~g~gv 172 (188)
T 1zd9_A 115 NLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMN---------------------LSA-IQDREICCYSISCKEKDNI 172 (188)
T ss_dssp HHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT---------------------GGG-CCSSCEEEEECCTTTCTTH
T ss_pred HHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhC---------------------hhh-hccCCeeEEEEECCCCCCH
Confidence 2222 25799999999999986532222221110 000 0012357899999999999
Q ss_pred HHHHHHHHHHHH
Q 014354 302 EAYFKAVEESAQ 313 (426)
Q Consensus 302 ~~l~~~l~~~~~ 313 (426)
.+++++|.+.+.
T Consensus 173 ~~l~~~l~~~~~ 184 (188)
T 1zd9_A 173 DITLQWLIQHSK 184 (188)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 36
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.74 E-value=2e-18 Score=150.77 Aligned_cols=163 Identities=13% Similarity=0.101 Sum_probs=94.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..+|+|+|++|||||||+|+|++..+.... ..+........ +..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~~~~~~~~~~-----------------~~~----- 46 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKY--------------DPTIEDFYRKE-----------------IEV----- 46 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCC--------------CTTCCEEEEEE-----------------EEE-----
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccC--------------CCCcceeEEEE-----------------EEE-----
Confidence 468999999999999999999987643211 00110000000 000
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~ 228 (426)
......+.||||||+.++. ......+ ..++++++|+|+....+..........+.....
T Consensus 47 -------------~~~~~~~~l~D~~G~~~~~------~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 105 (167)
T 1kao_A 47 -------------DSSPSVLEILDTAGTEQFA------SMRDLYI--KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR 105 (167)
T ss_dssp -------------TTEEEEEEEEECCCTTCCH------HHHHHHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT
T ss_pred -------------CCEEEEEEEEECCCchhhH------HHHHHHh--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC
Confidence 0123468999999987752 1111122 235899999999753321111111111222222
Q ss_pred hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l 308 (426)
..+.|+++|+||+|+....... ......+.. . + ..+++++||++|.|+.+++++|
T Consensus 106 ~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 106 YEKVPVILVGNKVDLESEREVS--SSEGRALAE---------------------E-W-GCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp TSCCCEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H-H-TSCEEEECTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCcccccccCC--HHHHHHHHH---------------------H-h-CCCEEEecCCCCcCHHHHHHHH
Confidence 3579999999999987543211 001111110 1 1 3579999999999999999999
Q ss_pred HHHHH
Q 014354 309 EESAQ 313 (426)
Q Consensus 309 ~~~~~ 313 (426)
.+.+.
T Consensus 161 ~~~~~ 165 (167)
T 1kao_A 161 VRQMN 165 (167)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
No 37
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.74 E-value=7.6e-18 Score=174.10 Aligned_cols=161 Identities=20% Similarity=0.293 Sum_probs=103.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
.+.+|+|+|.||||||||+|+|++..+.. ++.+|++| ++.+ .+.+.
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~------------vs~~~gTT----~d~~--------------~~~i~---- 287 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAI------------VTDIPGTT----RDVI--------------SEEIV---- 287 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCC------------CCCSSCCS----SCSC--------------CEEEE----
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCc------------cCCCCCee----eeeE--------------EEEEe----
Confidence 45789999999999999999999986442 55666665 2211 11111
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcc-cccch-hchH-HHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTW-SASG-AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~-e~~~~-~~~~-~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
..+..+.||||||+. ++... ...+ ......+ ..+|++|+|+|+........ ..++
T Consensus 288 ---------------~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~--~~aD~vl~VvD~s~~~s~~~-----~~il 345 (482)
T 1xzp_A 288 ---------------IRGILFRIVDTAGVRSETNDLVERLGIERTLQEI--EKADIVLFVLDASSPLDEED-----RKIL 345 (482)
T ss_dssp ---------------ETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH--HHCSEEEEEEETTSCCCHHH-----HHHH
T ss_pred ---------------cCCeEEEEEECCCccccchhhHHHHHHHHHHHHh--hcccEEEEEecCCCCCCHHH-----HHHH
Confidence 134679999999998 54210 0111 1112222 34699999999987655432 1222
Q ss_pred HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
..+ .++|+|+|+||+|+....... .+..+ +....+++++||++|.|+++|
T Consensus 346 ~~l--~~~piivV~NK~DL~~~~~~~----~~~~~------------------------~~~~~~~i~iSAktg~Gi~eL 395 (482)
T 1xzp_A 346 ERI--KNKRYLVVINKVDVVEKINEE----EIKNK------------------------LGTDRHMVKISALKGEGLEKL 395 (482)
T ss_dssp HHH--TTSSEEEEEEECSSCCCCCHH----HHHHH------------------------HTCSTTEEEEEGGGTCCHHHH
T ss_pred HHh--cCCCEEEEEECcccccccCHH----HHHHH------------------------hcCCCcEEEEECCCCCCHHHH
Confidence 323 378999999999997542111 11100 011257999999999999999
Q ss_pred HHHHHHHHHH
Q 014354 305 FKAVEESAQE 314 (426)
Q Consensus 305 ~~~l~~~~~~ 314 (426)
+++|.+.+..
T Consensus 396 ~~~l~~~~~~ 405 (482)
T 1xzp_A 396 EESIYRETQE 405 (482)
T ss_dssp HHHHHHHTHH
T ss_pred HHHHHHHHhh
Confidence 9999987653
No 38
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.74 E-value=3.8e-18 Score=149.57 Aligned_cols=158 Identities=13% Similarity=0.100 Sum_probs=86.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..+|+|+|.+|||||||+|+|++..... ....+.++ .. . .+..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~------------~~~~~~~~-~~---~----------------~~~~----- 44 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP------------EAEAAGHT-YD---R----------------SIVV----- 44 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------------------CE-EE---E----------------EEEE-----
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC------------CCCccccc-eE---E----------------EEEE-----
Confidence 4689999999999999999998765332 11111111 00 0 0000
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~ 228 (426)
......+.+|||||+..+. .+...+ ...++++++|+|..... .+.. ....+..+.
T Consensus 45 -------------~~~~~~~~i~D~~g~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~---s~~~-~~~~~~~~~ 99 (166)
T 3q72_A 45 -------------DGEEASLMVYDIWEQDGGR-------WLPGHC-MAMGDAYVIVYSVTDKG---SFEK-ASELRVQLR 99 (166)
T ss_dssp -------------TTEEEEEEEEECC-----------------------CCEEEEEEETTCHH---HHHH-HHHHHHHHH
T ss_pred -------------CCEEEEEEEEECCCCccch-------hhhhhh-hhhCCEEEEEEECCCHH---HHHH-HHHHHHHHH
Confidence 0233578999999987652 111111 13468999999987532 2111 111222222
Q ss_pred ----hccCCeEEEEecCCCCChHhHH-HHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 229 ----KTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 229 ----~~~~P~IlVlNKiDl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
..++|+++|+||+|+....... .....+ . . ....+++++||++|.|+.+
T Consensus 100 ~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~---~----------------------~-~~~~~~~~~Sa~~~~gi~~ 153 (166)
T 3q72_A 100 RARQTDDVPIILVGNKSDLVRSREVSVDEGRAC---A----------------------V-VFDCKFIETSAALHHNVQA 153 (166)
T ss_dssp HCC---CCCEEEEEECTTCCSSCCSCHHHHHHH---H----------------------H-HTTCEEEECBGGGTBSHHH
T ss_pred HhcCCCCCCEEEEEeccccccccccCHHHHHHH---H----------------------H-HhCCcEEEeccCCCCCHHH
Confidence 2478999999999998643221 111111 0 0 1236799999999999999
Q ss_pred HHHHHHHHHHH
Q 014354 304 YFKAVEESAQE 314 (426)
Q Consensus 304 l~~~l~~~~~~ 314 (426)
++++|.+.+..
T Consensus 154 l~~~l~~~~~~ 164 (166)
T 3q72_A 154 LFEGVVRQIRL 164 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 39
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.74 E-value=2.9e-18 Score=153.02 Aligned_cols=175 Identities=17% Similarity=0.194 Sum_probs=98.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|.+|||||||+++|++..+..... |.+.. .+... +..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~-------~t~~~-~~~~~-----------------------~~~---- 48 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI-------PTVFD-NYSAN-----------------------VMV---- 48 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCC-------CCSCC-EEEEE-----------------------EEE----
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcC-------Ccccc-eeEEE-----------------------EEE----
Confidence 34789999999999999999999876432110 00000 00000 000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
......+.||||||+.++...... ....+|++++|+|+....+... ....+...+
T Consensus 49 --------------~~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~---~~~~~~~~~ 103 (186)
T 1mh1_A 49 --------------DGKPVNLGLWDTAGQEDYDRLRPL--------SYPQTDVSLICFSLVSPASFEN---VRAKWYPEV 103 (186)
T ss_dssp --------------TTEEEEEEEECCCCSGGGTTTGGG--------GCTTCSEEEEEEETTCHHHHHH---HHHTHHHHH
T ss_pred --------------CCEEEEEEEEECCCCHhHHHHHHH--------hccCCcEEEEEEECCChhhHHH---HHHHHHHHH
Confidence 012357889999999775211100 1134799999999975332211 111122223
Q ss_pred hh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 228 YK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 228 ~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
.. .++|+++|+||+|+.............. ...+....+..+...++..+++++||++|.|+.+++
T Consensus 104 ~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 171 (186)
T 1mh1_A 104 RHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK------------LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171 (186)
T ss_dssp HHHSTTSCEEEEEECHHHHTCHHHHHHHHHTT------------CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHH
T ss_pred HHhCCCCCEEEEeEcccccccchhhhhhcccc------------cccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHH
Confidence 32 2899999999999876542211111000 000000001111112233479999999999999999
Q ss_pred HHHHHHHHH
Q 014354 306 KAVEESAQE 314 (426)
Q Consensus 306 ~~l~~~~~~ 314 (426)
++|.+.+.+
T Consensus 172 ~~l~~~~~~ 180 (186)
T 1mh1_A 172 DEAIRAVLC 180 (186)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHhc
Confidence 999887653
No 40
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.74 E-value=3e-18 Score=177.01 Aligned_cols=164 Identities=18% Similarity=0.216 Sum_probs=89.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
.+.+|+|+|.||||||||+|+|++..... ++..++++ ++.+ ...+.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------vs~~~gtT----~d~~--------------~~~i~---- 277 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAI------------VSHMPGTT----RDYI--------------EECFI---- 277 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------------------------------------CEEEE----
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc------------cCCCCCce----EEEE--------------EEEEE----
Confidence 46789999999999999999999875332 44445444 2211 00011
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHH-HHHHH-hcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII-TEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l-~~~~~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
..+..+.||||||+.++. ....... ..... ...+|++|+|+|++....... ......++.
T Consensus 278 ---------------~~g~~l~liDT~G~~~~~--~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~-~~~~~~~l~ 339 (476)
T 3gee_A 278 ---------------HDKTMFRLTDTAGLREAG--EEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDE-LTEIRELKA 339 (476)
T ss_dssp ---------------ETTEEEEEEC----------------------CCCSSCSEEEEEEETTTCSSGGG-HHHHHHHHH
T ss_pred ---------------ECCeEEEEEECCCCCcch--hHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhh-hHHHHHHHH
Confidence 134679999999997642 1111111 11111 144899999999988765532 111122333
Q ss_pred HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
.+. ++|+|+|+||+|+........ +.+. .. .+.+++++||++|.|+++|+
T Consensus 340 ~l~--~~piIvV~NK~Dl~~~~~~~~--~~l~-------------------------~~-~~~~~i~vSAktg~GI~eL~ 389 (476)
T 3gee_A 340 AHP--AAKFLTVANKLDRAANADALI--RAIA-------------------------DG-TGTEVIGISALNGDGIDTLK 389 (476)
T ss_dssp HCT--TSEEEEEEECTTSCTTTHHHH--HHHH-------------------------HH-HTSCEEECBTTTTBSHHHHH
T ss_pred hcC--CCCEEEEEECcCCCCccchhH--HHHH-------------------------hc-CCCceEEEEECCCCCHHHHH
Confidence 333 789999999999987653211 1111 11 12579999999999999999
Q ss_pred HHHHHHHH
Q 014354 306 KAVEESAQ 313 (426)
Q Consensus 306 ~~l~~~~~ 313 (426)
++|.+.+.
T Consensus 390 ~~i~~~~~ 397 (476)
T 3gee_A 390 QHMGDLVK 397 (476)
T ss_dssp HHHTHHHH
T ss_pred HHHHHHHh
Confidence 99998886
No 41
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.74 E-value=3.4e-18 Score=163.92 Aligned_cols=164 Identities=20% Similarity=0.257 Sum_probs=103.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+.++|+|+|++|||||||+|+|++.... +...|..+ ++.. .+.+.
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~-------------~~~~~~~t-~~~~-----------------~~~~~---- 46 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQH-------------VGNWPGVT-VEKK-----------------EGIME---- 46 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEE-------------EEECTTSS-CEEE-----------------EEEEE----
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcc-------------cCCCCCeE-EEee-----------------EEEEE----
Confidence 3578999999999999999999987642 12222221 1000 00111
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
..+..+.||||||+..+.............+....+|++++|+|+..... .++....+
T Consensus 47 ---------------~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~-------~~~~~~~~ 104 (271)
T 3k53_A 47 ---------------YREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMR-------NLFLTLEL 104 (271)
T ss_dssp ---------------ETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHH-------HHHHHHHH
T ss_pred ---------------ECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchh-------hHHHHHHH
Confidence 13356899999999886433322222333344466899999999976321 12233334
Q ss_pred hhcc-CCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 228 YKTR-LPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 228 ~~~~-~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
...+ +|+++|+||+|+......... ...+ .+ .. ..+++++||++|.|+.++++
T Consensus 105 ~~~~~~p~ilv~NK~Dl~~~~~~~~~---~~~l--------------~~--------~l-g~~~~~~Sa~~g~gi~~l~~ 158 (271)
T 3k53_A 105 FEMEVKNIILVLNKFDLLKKKGAKID---IKKM--------------RK--------EL-GVPVIPTNAKKGEGVEELKR 158 (271)
T ss_dssp HHTTCCSEEEEEECHHHHHHHTCCCC---HHHH--------------HH--------HH-SSCEEECBGGGTBTHHHHHH
T ss_pred HhcCCCCEEEEEEChhcCcccccHHH---HHHH--------------HH--------Hc-CCcEEEEEeCCCCCHHHHHH
Confidence 4556 999999999997653321100 1111 11 11 36799999999999999999
Q ss_pred HHHHHHHH
Q 014354 307 AVEESAQE 314 (426)
Q Consensus 307 ~l~~~~~~ 314 (426)
++...+..
T Consensus 159 ~i~~~~~~ 166 (271)
T 3k53_A 159 MIALMAEG 166 (271)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99988754
No 42
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.74 E-value=3.6e-18 Score=151.54 Aligned_cols=167 Identities=14% Similarity=0.121 Sum_probs=98.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+.++|+|+|.+|||||||+|+|++..+.. ..+.++..... ..+..
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~t~~~~~~------------------~~~~~-- 52 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVS--------------DYDPTIEDSYT------------------KICSV-- 52 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCS--------------SCCTTCCEEEE------------------EEEEE--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCcc--------------ccCCCcCceEE------------------EEEEE--
Confidence 356799999999999999999999875332 11112110000 00000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
. .....+.||||||+.++. .... ..+ ..+|++++|+|+...........-...++..
T Consensus 53 --~-------------~~~~~~~~~Dt~G~~~~~---~~~~---~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 109 (181)
T 2fn4_A 53 --D-------------GIPARLDILDTAGQEEFG---AMRE---QYM--RAGHGFLLVFAINDRQSFNEVGKLFTQILRV 109 (181)
T ss_dssp --T-------------TEEEEEEEEECCCTTTTS---CCHH---HHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred --C-------------CEEEEEEEEECCCchhhH---HHHH---HHH--hhCCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 0 122578899999987752 1111 112 2368999999987532211111000111122
Q ss_pred HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
....++|+++|+||+|+........ .....+. . ....+++++||++|.|+.++++
T Consensus 110 ~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~----------------------~-~~~~~~~~~Sa~~~~gv~~l~~ 164 (181)
T 2fn4_A 110 KDRDDFPVVLVGNKADLESQRQVPR--SEASAFG----------------------A-SHHVAYFEASAKLRLNVDEAFE 164 (181)
T ss_dssp HTSSCCCEEEEEECGGGGGGCCSCH--HHHHHHH----------------------H-HTTCEEEECBTTTTBSHHHHHH
T ss_pred cCCCCCCEEEEEECcccccccccCH--HHHHHHH----------------------H-HcCCeEEEecCCCCCCHHHHHH
Confidence 2345789999999999876432210 0111110 0 1235799999999999999999
Q ss_pred HHHHHHHHH
Q 014354 307 AVEESAQEF 315 (426)
Q Consensus 307 ~l~~~~~~~ 315 (426)
+|.+.+...
T Consensus 165 ~l~~~~~~~ 173 (181)
T 2fn4_A 165 QLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999887653
No 43
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.74 E-value=9.8e-18 Score=152.66 Aligned_cols=167 Identities=18% Similarity=0.223 Sum_probs=98.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+|+|++|||||||+|+|++..+..... |.+ ..+.... .+...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------~t~-------~~~~~~~----------------~~~~~-- 53 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK-------ATI-------GADFLTK----------------EVMVD-- 53 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCC-------CCC-------SEEEEEE----------------EEESS--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCC-------Ccc-------cceEEEE----------------EEEEC--
Confidence 356789999999999999999999876442110 000 0000000 00000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
.....+.||||||+..+...... . ...+|++|+|+|+......... ...+..+..
T Consensus 54 ----------------~~~~~~~l~Dt~G~~~~~~~~~~------~--~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~ 108 (207)
T 1vg8_A 54 ----------------DRLVTMQIWDTAGQERFQSLGVA------F--YRGADCCVLVFDVTAPNTFKTL-DSWRDEFLI 108 (207)
T ss_dssp ----------------SCEEEEEEEEECSSGGGSCSCCG------G--GTTCSEEEEEEETTCHHHHHTH-HHHHHHHHH
T ss_pred ----------------CEEEEEEEEeCCCcHHHHHhHHH------H--HhCCcEEEEEEECCCHHHHHHH-HHHHHHHHH
Confidence 12357899999998765221110 1 1347999999999754321111 000111111
Q ss_pred Hh----hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354 227 LY----KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 227 l~----~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~ 302 (426)
.. ..++|++||+||+|+............+ . ......+++++||++|.|+.
T Consensus 109 ~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~---~----------------------~~~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 109 QASPRDPENFPFVVLGNKIDLENRQVATKRAQAW---C----------------------YSKNNIPYFETSAKEAINVE 163 (207)
T ss_dssp HHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHH---H----------------------HHTTSCCEEECBTTTTBSHH
T ss_pred hcccccCCCCcEEEEEECCCCcccccCHHHHHHH---H----------------------HhcCCceEEEEeCCCCCCHH
Confidence 11 1478999999999998432211111111 0 11234679999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014354 303 AYFKAVEESAQEF 315 (426)
Q Consensus 303 ~l~~~l~~~~~~~ 315 (426)
+++++|.+.+...
T Consensus 164 ~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 164 QAFQTIARNALKQ 176 (207)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 44
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.74 E-value=8e-18 Score=146.57 Aligned_cols=157 Identities=22% Similarity=0.240 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
++|+++|.+|||||||+++|++..... ....+.++ .+ .......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~------------~~~~~~~~-~~--------------------~~~~~~~--- 45 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV------------VADVPGVT-RD--------------------LKEGVVE--- 45 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------------------C--------------------CEEEEEE---
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee------------ccCCCCce-ec--------------------ceEEEEE---
Confidence 579999999999999999999876321 11111111 00 0000000
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH--hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~--~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
..+..+.||||||+..... ....+..... ...+|++++|+|+......... .+...+
T Consensus 46 -------------~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-----~~~~~~ 104 (161)
T 2dyk_A 46 -------------TDRGRFLLVDTGGLWSGDK---WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADY-----EVAEYL 104 (161)
T ss_dssp -------------ETTEEEEEEECGGGCSSSS---CCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHH-----HHHHHH
T ss_pred -------------eCCceEEEEECCCCCCccc---hHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHH-----HHHHHH
Confidence 1235789999999976421 1111222211 1457999999999887554331 223334
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...+.|+++|+||+|+..... ... .+ . .++..+++++||++|.|+.+++++
T Consensus 105 ~~~~~p~ilv~nK~Dl~~~~~------~~~--------------~~----~-----~~~~~~~~~~Sa~~~~gv~~l~~~ 155 (161)
T 2dyk_A 105 RRKGKPVILVATKVDDPKHEL------YLG--------------PL----Y-----GLGFGDPIPTSSEHARGLEELLEA 155 (161)
T ss_dssp HHHTCCEEEEEECCCSGGGGG------GCG--------------GG----G-----GGSSCSCEECBTTTTBSHHHHHHH
T ss_pred HhcCCCEEEEEECcccccchH------hHH--------------HH----H-----hCCCCCeEEEecccCCChHHHHHH
Confidence 456899999999999876521 000 00 0 122337999999999999999999
Q ss_pred HHHHH
Q 014354 308 VEESA 312 (426)
Q Consensus 308 l~~~~ 312 (426)
|.+.+
T Consensus 156 l~~~l 160 (161)
T 2dyk_A 156 IWERL 160 (161)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 98754
No 45
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.74 E-value=2e-18 Score=154.80 Aligned_cols=166 Identities=23% Similarity=0.278 Sum_probs=100.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|++|||||||+|+|++.... +...|..+ ++.. .+.+.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~-------------~~~~~~~t-~~~~-----------------~~~~~---- 50 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVY-------------IGNWPGVT-VEKK-----------------EGEFE---- 50 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEE-------------EEECTTSC-CEEE-----------------EEEEE----
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc-------------ccCCCCee-ccce-----------------EEEEE----
Confidence 4578999999999999999999986422 11222211 0000 00010
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
..+..+.||||||+..+.............+....++++++|+|+... . ....+...+
T Consensus 51 ---------------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~------~-~~~~~~~~~ 108 (188)
T 2wjg_A 51 ---------------YNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL------E-RNLYLTLQL 108 (188)
T ss_dssp ---------------ETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH------H-HHHHHHHHH
T ss_pred ---------------eCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH------H-HHHHHHHHH
Confidence 133678999999998763221111122223333457999999998641 1 112233445
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...+.|+|+|+||+|+....... .....+ .+. + ..+++++||++|.|+.+++++
T Consensus 109 ~~~~~piilv~nK~Dl~~~~~~~---~~~~~~--------------~~~--------~-~~~~~~~Sa~~~~~v~~l~~~ 162 (188)
T 2wjg_A 109 MEMGANLLLALNKMDLAKSLGIE---IDVDKL--------------EKI--------L-GVKVVPLSAAKKMGIEELKKA 162 (188)
T ss_dssp HTTTCCEEEEEECHHHHHHTTCC---CCHHHH--------------HHH--------H-TSCEEECBGGGTBSHHHHHHH
T ss_pred HhcCCCEEEEEEhhhccccccch---HHHHHH--------------HHH--------h-CCCeEEEEecCCCCHHHHHHH
Confidence 55789999999999975432111 011111 111 1 257999999999999999999
Q ss_pred HHHHHHHHH
Q 014354 308 VEESAQEFM 316 (426)
Q Consensus 308 l~~~~~~~~ 316 (426)
|...+....
T Consensus 163 i~~~~~~~~ 171 (188)
T 2wjg_A 163 ISIAVKDKK 171 (188)
T ss_dssp HHHHHTTC-
T ss_pred HHHHHHhcc
Confidence 998876543
No 46
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.74 E-value=2.4e-18 Score=157.55 Aligned_cols=173 Identities=16% Similarity=0.191 Sum_probs=98.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+|+|.+|||||||++++++........ |.+. ..+... +...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~-------~t~~-~~~~~~-----------------------~~~~-- 74 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI-------PTVF-DNYSAN-----------------------VMVD-- 74 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CC-------CCSE-EEEEEE-----------------------EECC--
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcC-------Ceec-ceeEEE-----------------------EEEC--
Confidence 456899999999999999999999775432111 0000 000000 0000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
...+.+.||||||+.++...... ....+|++++|+|+....+... ....+...
T Consensus 75 ----------------~~~~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~---~~~~~~~~ 127 (204)
T 4gzl_A 75 ----------------GKPVNLGLWDTAGLEDYDRLRPL--------SYPQTDVFLICFSLVSPASFEN---VRAKWYPE 127 (204)
T ss_dssp -----------------CEEEEEEEEECCSGGGTTTGGG--------GCTTCSEEEEEEETTCHHHHHH---HHHTHHHH
T ss_pred ----------------CEEEEEEEEECCCchhhHHHHHH--------HhccCCEEEEEEECCCHHHHHH---HHHHHHHH
Confidence 12356779999999765211110 1134799999999975432211 11112223
Q ss_pred Hhh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 227 LYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 227 l~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
+.. .++|+|||+||+|+.......+...... ...+....+..+...++..+++++||++|.|+.++
T Consensus 128 ~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 195 (204)
T 4gzl_A 128 VRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK------------LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 195 (204)
T ss_dssp HHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTT------------CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred HHHhCCCCCEEEEEechhhccchhhhhhhhccc------------cccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHH
Confidence 333 3899999999999987653222211100 00011111111222344567999999999999999
Q ss_pred HHHHHHH
Q 014354 305 FKAVEES 311 (426)
Q Consensus 305 ~~~l~~~ 311 (426)
+++|.+.
T Consensus 196 ~~~l~~~ 202 (204)
T 4gzl_A 196 FDEAIRA 202 (204)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9998764
No 47
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.74 E-value=2.3e-17 Score=170.85 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=81.9
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
+..+.||||||+.++. ..+... ...+|++|+|||+..+..++++ ..+..+...++|.|+|+||+|+.
T Consensus 72 ~~~i~iiDtPGh~~~~------~~~~~~--~~~aD~~ilVvda~~g~~~qt~-----e~l~~~~~~~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 72 NYRITLVDAPGHADLI------RAVVSA--ADIIDLALIVVDAKEGPKTQTG-----EHMLILDHFNIPIIVVITKSDNA 138 (482)
T ss_dssp TEEEEECCCSSHHHHH------HHHHHH--TTSCCEEEEEEETTTCSCHHHH-----HHHHHHHHTTCCBCEEEECTTSS
T ss_pred CEEEEEEECCChHHHH------HHHHHH--HhhCCEEEEEEecCCCccHHHH-----HHHHHHHHcCCCEEEEEECCCcc
Confidence 4689999999986641 122222 2458999999999988776653 23344566789999999999999
Q ss_pred ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhh-hhcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDE-FYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (426)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~ 313 (426)
.........+.+..+... . .+...+++++||++|.|+.+|+++|...++
T Consensus 139 ~~~~~~~~~~~l~~~l~~--------------------~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 139 GTEEIKRTEMIMKSILQS--------------------THNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CHHHHHHHHHHHHHHHHH--------------------SSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhh--------------------hcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 865444444444322211 1 123578999999999999999999998776
No 48
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.74 E-value=1.2e-17 Score=149.35 Aligned_cols=161 Identities=17% Similarity=0.153 Sum_probs=94.7
Q ss_pred CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc
Q 014354 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT 143 (426)
Q Consensus 64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~ 143 (426)
....+..+|+|+|.+|||||||+|+|++..+.. ..|... .. ..
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------~~~t~~----~~-------------------------~~ 58 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVH--------TSPTIG----SN-------------------------VE 58 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSCEE--------EECCSS----SS-------------------------CE
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCc--------cCCcCc----ee-------------------------eE
Confidence 345567899999999999999999999876411 001110 00 00
Q ss_pred ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (426)
Q Consensus 144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~ 223 (426)
... ..+..+.||||||+.++.... ... ...+|++++|+|+....+..... ..+
T Consensus 59 ~~~----------------~~~~~~~i~Dt~G~~~~~~~~------~~~--~~~~d~ii~v~D~~~~~s~~~~~---~~~ 111 (181)
T 2h17_A 59 EIV----------------INNTRFLMWDIGGQESLRSSW------NTY--YTNTEFVIVVVDSTDRERISVTR---EEL 111 (181)
T ss_dssp EEE----------------ETTEEEEEEEESSSGGGTCGG------GGG--GTTCCEEEEEEETTCTTTHHHHH---HHH
T ss_pred EEE----------------ECCEEEEEEECCCCHhHHHHH------HHH--hccCCEEEEEEECCCHHHHHHHH---HHH
Confidence 000 133689999999997752111 011 13479999999998753322211 111
Q ss_pred HHHHh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC
Q 014354 224 CSILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300 (426)
Q Consensus 224 ~~~l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g 300 (426)
...+. ..++|+|+|+||+|+.......++.+.+. ... ......+++++||++|.|
T Consensus 112 ~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~---------------------~~~-~~~~~~~~~~~Sa~~g~g 169 (181)
T 2h17_A 112 YKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK---------------------LTS-IKDHQWHIQACCALTGEG 169 (181)
T ss_dssp HHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT---------------------GGG-CCSSCEEEEECBTTTTBT
T ss_pred HHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhC---------------------ccc-ccCCceEEEEccCCCCcC
Confidence 22222 36799999999999976422212211110 000 001124799999999999
Q ss_pred HHHHHHHHHH
Q 014354 301 IEAYFKAVEE 310 (426)
Q Consensus 301 v~~l~~~l~~ 310 (426)
+.+++++|.+
T Consensus 170 i~~l~~~l~~ 179 (181)
T 2h17_A 170 LCQGLEWMMS 179 (181)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 49
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.74 E-value=7.2e-18 Score=151.96 Aligned_cols=165 Identities=17% Similarity=0.255 Sum_probs=96.2
Q ss_pred CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc
Q 014354 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT 143 (426)
Q Consensus 64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~ 143 (426)
....+..+|+|+|.+|||||||+|+|++...... ....+..+.. ..+.
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-------------~~~~t~~~~~-------------------~~~~ 63 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQ-------------NILPTIGFSI-------------------EKFK 63 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCS-------------SCCCCSSEEE-------------------EEEE
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCC-------------CcCCccceeE-------------------EEEE
Confidence 3345678999999999999999999998762110 0000110000 0000
Q ss_pred ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (426)
Q Consensus 144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~ 223 (426)
..+..+.||||||+.++.... ...+ ..+|++++|+|+....+ +......+
T Consensus 64 -------------------~~~~~~~l~Dt~G~~~~~~~~------~~~~--~~~d~ii~v~d~~~~~s---~~~~~~~~ 113 (190)
T 2h57_A 64 -------------------SSSLSFTVFDMSGQGRYRNLW------EHYY--KEGQAIIFVIDSSDRLR---MVVAKEEL 113 (190)
T ss_dssp -------------------CSSCEEEEEEECCSTTTGGGG------GGGG--GGCSEEEEEEETTCHHH---HHHHHHHH
T ss_pred -------------------ECCEEEEEEECCCCHHHHHHH------HHHH--hcCCEEEEEEECCCHHH---HHHHHHHH
Confidence 134689999999987752111 0111 34799999999975321 11111111
Q ss_pred HHHHhh-----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeeccc
Q 014354 224 CSILYK-----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVS 297 (426)
Q Consensus 224 ~~~l~~-----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~ 297 (426)
...+.. .++|+++|+||+|+.......++.+.+. +..+ ....+++++||++
T Consensus 114 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 114 DTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLC-----------------------LENIKDKPWHICASDAIK 170 (190)
T ss_dssp HHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHT-----------------------GGGCCSSCEEEEECBTTT
T ss_pred HHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhC-----------------------hhhccCCceEEEEccCCC
Confidence 222222 5789999999999986532222221110 0011 1235799999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 014354 298 GAGIEAYFKAVEESAQ 313 (426)
Q Consensus 298 g~gv~~l~~~l~~~~~ 313 (426)
|.|+.+++++|.+.+.
T Consensus 171 ~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 171 GEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp TBTHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999987654
No 50
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.74 E-value=1.4e-17 Score=151.79 Aligned_cols=174 Identities=13% Similarity=0.146 Sum_probs=98.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
....+|+|+|.+|||||||+++|++..+.... .| +....... .+..
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-------------~~-t~~~~~~~-----------------~~~~--- 68 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-------------VP-TVFENYIA-----------------DIEV--- 68 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSC-------------CC-SSCCCCEE-----------------EEEE---
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCccc-------------CC-cccceEEE-----------------EEEE---
Confidence 44578999999999999999999987643211 01 11000000 0000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
......+.||||||+.++...... ....+|++++|+|+.... .+......+...
T Consensus 69 ---------------~~~~~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~ 122 (201)
T 2gco_A 69 ---------------DGKQVELALWDTAGQEDYDRLRPL--------SYPDTDVILMCFSIDSPD---SLENIPEKWTPE 122 (201)
T ss_dssp ---------------TTEEEEEEEECCCCSGGGTTTGGG--------GCTTCSEEEEEEETTCHH---HHHHHHHTHHHH
T ss_pred ---------------CCEEEEEEEEECCCchhHHHHHHH--------hcCCCCEEEEEEECCCHH---HHHHHHHHHHHH
Confidence 012357899999998765211110 113479999999986532 211110112222
Q ss_pred Hhh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 227 LYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 227 l~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
+.. .++|+++|+||+|+.......+...... . ..+....+..+...++..+++++||++|.|+.++
T Consensus 123 ~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-------~-----~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 190 (201)
T 2gco_A 123 VKHFCPNVPIILVGNKKDLRQDEHTRRELAKMK-------Q-----EPVRSEEGRDMANRISAFGYLECSAKTKEGVREV 190 (201)
T ss_dssp HHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTT-------C-----CCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred HHHhCCCCCEEEEEecHHhhcCccchhhhcccc-------c-----CcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHH
Confidence 333 2799999999999987643222111100 0 0000011111112223347999999999999999
Q ss_pred HHHHHHHH
Q 014354 305 FKAVEESA 312 (426)
Q Consensus 305 ~~~l~~~~ 312 (426)
+++|.+.+
T Consensus 191 ~~~i~~~~ 198 (201)
T 2gco_A 191 FEMATRAG 198 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 51
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.73 E-value=1.6e-17 Score=170.28 Aligned_cols=176 Identities=20% Similarity=0.261 Sum_probs=108.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
...+|+|+|+||||||||+|+|++..... ++..|++| ++.. .+.+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~------------v~~~~gtT----~d~~--------------~~~i~---- 224 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERAL------------VSPIPGTT----RDPV--------------DDEVF---- 224 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEE------------ECCCC----------C--------------CEEEE----
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccc------------cCCCCCCc----CCce--------------EEEEE----
Confidence 46899999999999999999999986431 34445444 2211 11111
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh-----c-hHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-----A-SGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML 221 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~-----~-~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l 221 (426)
..+.++.+|||||+....... . ........+ ..+|++++|+|+..+....+ .
T Consensus 225 ---------------~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i--~~ad~vllv~d~~~~~~~~~-----~ 282 (439)
T 1mky_A 225 ---------------IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI--EKADVVVIVLDATQGITRQD-----Q 282 (439)
T ss_dssp ---------------ETTEEEEESSCSCC-----------CCSCCHHHHHHH--HHCSEEEEEEETTTCCCHHH-----H
T ss_pred ---------------ECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH--hhCCEEEEEEeCCCCCCHHH-----H
Confidence 133578999999986532110 0 000111122 33699999999988765443 2
Q ss_pred HHHHHHhhccCCeEEEEecCCCCChHh--HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC
Q 014354 222 YACSILYKTRLPLVLAFNKTDVAQHEF--ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA 299 (426)
Q Consensus 222 ~~~~~l~~~~~P~IlVlNKiDl~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~ 299 (426)
.+...+...++|+|+|+||+|+..... ..++...+. +.+ .+..+.+++++||++|.
T Consensus 283 ~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~-----------------~~~-----~~~~~~~~~~~SA~~g~ 340 (439)
T 1mky_A 283 RMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFR-----------------EKL-----YFIDYSPLIFTSADKGW 340 (439)
T ss_dssp HHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHH-----------------HHC-----GGGTTSCEEECBTTTTB
T ss_pred HHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHH-----------------HHh-----ccCCCCcEEEEECCCCC
Confidence 234445667899999999999986542 222221111 111 12345789999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhh
Q 014354 300 GIEAYFKAVEESAQEFMETYKA 321 (426)
Q Consensus 300 gv~~l~~~l~~~~~~~~~~~~~ 321 (426)
|+.++++.+.+.+......++.
T Consensus 341 gv~~l~~~i~~~~~~~~~~i~t 362 (439)
T 1mky_A 341 NIDRMIDAMNLAYASYTTKVPS 362 (439)
T ss_dssp SHHHHHHHHHHHHHHHTCCCCH
T ss_pred CHHHHHHHHHHHHHhhcccCCH
Confidence 9999999999887766544443
No 52
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.73 E-value=1.4e-17 Score=148.66 Aligned_cols=167 Identities=13% Similarity=0.096 Sum_probs=97.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..+..+|+|+|.+|||||||+|+|++...... ...+....... .+..
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~--------------~~~t~~~~~~~-----------------~~~~-- 61 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDD--------------YDPTIEDSYLK-----------------HTEI-- 61 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSC--------------CCTTCCEEEEE-----------------EEEE--
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCC--------------CCCCccceeEE-----------------EEEe--
Confidence 44568999999999999999999997754321 11111000000 0000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
......+.||||||+.++.. ... ..+ ..+|++++|+|+....+......-...+..
T Consensus 62 ----------------~~~~~~l~i~Dt~G~~~~~~---~~~---~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 117 (183)
T 3kkq_A 62 ----------------DNQWAILDVLDTAGQEEFSA---MRE---QYM--RTGDGFLIVYSVTDKASFEHVDRFHQLILR 117 (183)
T ss_dssp ----------------TTEEEEEEEEECCSCGGGCS---SHH---HHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred ----------------CCcEEEEEEEECCCchhhHH---HHH---HHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 01224567899999877521 111 112 236999999999764221111100011122
Q ss_pred HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecc-cCCCHHHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV-SGAGIEAY 304 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~-~g~gv~~l 304 (426)
.....++|+|+|+||+|+....... ......+. ..+ ..+++++||+ +|.|++++
T Consensus 118 ~~~~~~~p~ilv~nK~Dl~~~~~v~--~~~~~~~~----------------------~~~-~~~~~~~Sa~~~~~~v~~l 172 (183)
T 3kkq_A 118 VKDRESFPMILVANKVDLMHLRKVT--RDQGKEMA----------------------TKY-NIPYIETSAKDPPLNVDKT 172 (183)
T ss_dssp HHTSSCCCEEEEEECTTCSTTCCSC--HHHHHHHH----------------------HHH-TCCEEEEBCSSSCBSHHHH
T ss_pred hcCCCCCcEEEEEECCCchhccCcC--HHHHHHHH----------------------HHh-CCeEEEeccCCCCCCHHHH
Confidence 2234678999999999997643211 01111111 111 2679999999 99999999
Q ss_pred HHHHHHHHHH
Q 014354 305 FKAVEESAQE 314 (426)
Q Consensus 305 ~~~l~~~~~~ 314 (426)
+++|.+.+.+
T Consensus 173 ~~~l~~~i~~ 182 (183)
T 3kkq_A 173 FHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999887653
No 53
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.73 E-value=1.9e-18 Score=157.52 Aligned_cols=167 Identities=20% Similarity=0.110 Sum_probs=97.5
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (426)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~ 144 (426)
...+..+|+|+|.+|||||||+|+|++..+.... +.+....... ....
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~------------------~~~~ 67 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY--------------DPTVENTYSK------------------IVTL 67 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC--------------CCCSEEEEEE------------------EEC-
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC--------------CCccceEEEE------------------EEEE
Confidence 3456789999999999999999999987654211 1111000000 0000
Q ss_pred cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
......+.||||||+.++...... ....+|++++|+|+........ ...++
T Consensus 68 -----------------~~~~~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~----~~~~~ 118 (201)
T 3oes_A 68 -----------------GKDEFHLHLVDTAGQDEYSILPYS--------FIIGVHGYVLVYSVTSLHSFQV----IESLY 118 (201)
T ss_dssp --------------------CEEEEEEEECCCCTTCCCCGG--------GTTTCCEEEEEEETTCHHHHHH----HHHHH
T ss_pred -----------------CCEEEEEEEEECCCccchHHHHHH--------HHhcCCEEEEEEeCCCHHHHHH----HHHHH
Confidence 023467899999998775211100 0134799999999975322111 11222
Q ss_pred HHHh----hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC
Q 014354 225 SILY----KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300 (426)
Q Consensus 225 ~~l~----~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g 300 (426)
..+. ..++|+|||+||+|+......... ....+. .. ...+++++||++|.|
T Consensus 119 ~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~--~~~~~~----------------------~~-~~~~~~~~Sa~~~~~ 173 (201)
T 3oes_A 119 QKLHEGHGKTRVPVVLVGNKADLSPEREVQAV--EGKKLA----------------------ES-WGATFMESSARENQL 173 (201)
T ss_dssp HHHHC-----CCCEEEEEECTTCGGGCCSCHH--HHHHHH----------------------HH-HTCEEEECCTTCHHH
T ss_pred HHHHHhcCCCCCCEEEEEECccCccccccCHH--HHHHHH----------------------HH-hCCeEEEEeCCCCCC
Confidence 2222 247899999999998754321100 011110 01 125799999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 014354 301 IEAYFKAVEESAQEFME 317 (426)
Q Consensus 301 v~~l~~~l~~~~~~~~~ 317 (426)
+.+++.+|.+.+.....
T Consensus 174 v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 174 TQGIFTKVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999988776543
No 54
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.73 E-value=1.5e-17 Score=145.43 Aligned_cols=157 Identities=18% Similarity=0.217 Sum_probs=94.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
+|+|+|.+|||||||+++|++..+.. ..| +..+. .....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~--------------~~~-t~~~~----------------------~~~~~---- 40 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT--------------TIP-TIGFN----------------------VETVE---- 40 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC--------------CCC-CSSCC----------------------EEEEE----
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc--------------ccC-cCcee----------------------EEEEE----
Confidence 68999999999999999999876431 111 11000 00000
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-- 228 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-- 228 (426)
..+..+.||||||+.++. .+...+ ...+|++++|+|+....+ +......+...+.
T Consensus 41 ------------~~~~~~~i~Dt~G~~~~~-------~~~~~~-~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~ 97 (164)
T 1r8s_A 41 ------------YKNISFTVWDVGGQDKIR-------PLWRHY-FQNTQGLIFVVDSNDRER---VNEAREELMRMLAED 97 (164)
T ss_dssp ------------CSSCEEEEEECCCCGGGH-------HHHHHH-TTTCSEEEEEEETTCGGG---HHHHHHHHHHHHTCG
T ss_pred ------------ECCEEEEEEEcCCChhhH-------HHHHHH-hccCCEEEEEEECCCHHH---HHHHHHHHHHHHhch
Confidence 134789999999997641 121111 145799999999976422 2111111112222
Q ss_pred -hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 229 -KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 229 -~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
..+.|+++|+||+|+........+...+ +..... ....+++++||++|.|+.+++++
T Consensus 98 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~---------------------~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~ 155 (164)
T 1r8s_A 98 ELRDAVLLVFANKQDLPNAMNAAEITDKL---------------------GLHSLR-HRNWYIQATCATSGDGLYEGLDW 155 (164)
T ss_dssp GGTTCEEEEEEECTTSTTCCCHHHHHHHT---------------------TGGGCS-SCCEEEEECBTTTTBTHHHHHHH
T ss_pred hhcCCeEEEEEECcCCcCCCCHHHHHHHh---------------------Cccccc-CccEEEEEcccCCCcCHHHHHHH
Confidence 2378999999999997653222221111 100000 01246999999999999999999
Q ss_pred HHHHHH
Q 014354 308 VEESAQ 313 (426)
Q Consensus 308 l~~~~~ 313 (426)
|.+.+.
T Consensus 156 l~~~i~ 161 (164)
T 1r8s_A 156 LSNQLR 161 (164)
T ss_dssp HHHHC-
T ss_pred HHHHHh
Confidence 987654
No 55
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.73 E-value=4.4e-17 Score=165.11 Aligned_cols=116 Identities=21% Similarity=0.258 Sum_probs=78.6
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCC-CchhhhhhHHHHHHHHhhcc-CCeEEEEecCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTR-LPLVLAFNKTDV 243 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~-~~~~~~~~~l~~~~~l~~~~-~P~IlVlNKiDl 243 (426)
..+.||||||+.++. ..+...+ ..+|++|+|+|+..+. ..++ ...+..+...+ .|+|+|+||+|+
T Consensus 75 ~~~~iiDtPGh~~~~------~~~~~~~--~~~D~~ilVvda~~~~~~~qt-----~~~~~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 75 RRISFIDAPGHEVLM------ATMLSGA--ALMDGAILVVAANEPFPQPQT-----REHFVALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEECCCCGGGH------HHHHHHH--TTCSEEEEEEETTSCSSCHHH-----HHHHHHHHHHTCCCEEEEEECGGG
T ss_pred ceEEEEECCCcHHHH------HHHHHHH--hhCCEEEEEEECCCCCCcHHH-----HHHHHHHHHcCCCCEEEEEECccc
Confidence 578999999987752 2222222 4589999999999876 3333 12223334444 489999999999
Q ss_pred CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
..........+.+..+... .+....+++++||++|.|+.+|+++|...++.
T Consensus 142 ~~~~~~~~~~~~i~~~l~~--------------------~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 142 VSKEEALSQYRQIKQFTKG--------------------TWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp SCHHHHHHHHHHHHHHHTT--------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cchHHHHHHHHHHHHHHHh--------------------hCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 9876544444444322111 12345789999999999999999999886643
No 56
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.73 E-value=9.9e-18 Score=152.35 Aligned_cols=166 Identities=15% Similarity=0.190 Sum_probs=97.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+.++|+|+|.+|||||||+|+|++..+... .+.++...... .+..
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~-----------------~~~~--- 57 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVED--------------YEPTKADSYRK-----------------KVVL--- 57 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTT--------------CCTTCCEEEEE-----------------EEEE---
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCC--------------CCCccceEEEE-----------------EEEE---
Confidence 3567999999999999999999998764321 11111000000 0000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHH-HHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML-YACS 225 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l-~~~~ 225 (426)
. ...+.+.||||||+.++. ......+ ..+|++++|+|+....+... ....+ .+..
T Consensus 58 --~-------------~~~~~~~l~Dt~G~~~~~------~~~~~~~--~~~~~~i~v~d~~~~~s~~~-~~~~~~~i~~ 113 (206)
T 2bov_A 58 --D-------------GEEVQIDILDTAGQEDYA------AIRDNYF--RSGEGFLCVFSITEMESFAA-TADFREQILR 113 (206)
T ss_dssp --T-------------TEEEEEEEEECCCTTCCH------HHHHHHH--HHCSEEEEEEETTCHHHHHH-HHHHHHHHHH
T ss_pred --C-------------CEEEEEEEEcCCChhhhH------HHHHHHH--hhCCEEEEEEECCCHHHHHH-HHHHHHHHHH
Confidence 0 123578999999987752 1111222 23689999999875322111 10101 1111
Q ss_pred HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
.....++|++||+||+|+....... ......+.. . + ..+++++||++|.|+.+++
T Consensus 114 ~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 114 VKEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAE---------------------Q-W-NVNYVETSAKTRANVDKVF 168 (206)
T ss_dssp HTTCSCCCEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H-H-TCEEEEECTTTCTTHHHHH
T ss_pred hcCCCCCCEEEEEeccCcccccccc--HHHHHHHHH---------------------H-h-CCeEEEEeCCCCCCHHHHH
Confidence 1112479999999999997643210 011111110 1 1 2579999999999999999
Q ss_pred HHHHHHHHHH
Q 014354 306 KAVEESAQEF 315 (426)
Q Consensus 306 ~~l~~~~~~~ 315 (426)
.+|.+.+.+.
T Consensus 169 ~~l~~~i~~~ 178 (206)
T 2bov_A 169 FDLMREIRAR 178 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999887664
No 57
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.73 E-value=7.9e-18 Score=150.86 Aligned_cols=163 Identities=16% Similarity=0.192 Sum_probs=98.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
++..+|+|+|++|||||||+|+|++.. .... .| +.... .....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~-------~~-------t~~~~----------------------~~~~~ 58 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTI-------SP-------TLGFN----------------------IKTLE 58 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSC-------CC-------CSSEE----------------------EEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcc-------cc-------cCccc----------------------eEEEE
Confidence 467899999999999999999999865 2110 01 11000 00000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
..+..+.||||||+.++... ... ....+|++++|+|+....+... ........
T Consensus 59 ----------------~~~~~~~~~Dt~G~~~~~~~-------~~~-~~~~~d~ii~v~d~~~~~s~~~---~~~~~~~~ 111 (186)
T 1ksh_A 59 ----------------HRGFKLNIWDVGGQKSLRSY-------WRN-YFESTDGLIWVVDSADRQRMQD---CQRELQSL 111 (186)
T ss_dssp ----------------ETTEEEEEEEECCSHHHHTT-------GGG-GCTTCSEEEEEEETTCGGGHHH---HHHHHHHH
T ss_pred ----------------ECCEEEEEEECCCCHhHHHH-------HHH-HhcCCCEEEEEEECcCHHHHHH---HHHHHHHH
Confidence 12468899999999664210 000 1134799999999976432211 11111222
Q ss_pred Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
+. ..++|+++|+||+|+.......++.+.+. ... ......+++++||++|.|+.+
T Consensus 112 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~~~~Sa~~~~gi~~ 169 (186)
T 1ksh_A 112 LVEERLAGATLLIFANKQDLPGALSCNAIQEALE---------------------LDS-IRSHHWRIQGCSAVTGEDLLP 169 (186)
T ss_dssp HTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT---------------------GGG-CCSSCEEEEECCTTTCTTHHH
T ss_pred HhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhC---------------------hhh-ccCCceEEEEeeCCCCCCHHH
Confidence 22 25799999999999987533222211110 000 001235799999999999999
Q ss_pred HHHHHHHHHHHH
Q 014354 304 YFKAVEESAQEF 315 (426)
Q Consensus 304 l~~~l~~~~~~~ 315 (426)
++++|.+.+.+.
T Consensus 170 l~~~l~~~i~~~ 181 (186)
T 1ksh_A 170 GIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc
Confidence 999999887653
No 58
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.73 E-value=7.7e-18 Score=152.99 Aligned_cols=178 Identities=13% Similarity=0.132 Sum_probs=96.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..+..+|+|+|.+|||||||+++|++..+... .+.++..... ..+.
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~--------------~~~t~~~~~~------------------~~~~-- 62 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTE--------------YIPTAFDNFS------------------AVVS-- 62 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC----------------------CCSSEEEE------------------EEEE--
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCC--------------CCCcccceeE------------------EEEE--
Confidence 45678999999999999999999998753321 1111100000 0000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
. ....+.+.||||||+.++..... . ....+|++++|+|+........ ....++.
T Consensus 63 ---~------------~~~~~~~~i~Dt~G~~~~~~~~~-------~-~~~~~~~~i~v~d~~~~~s~~~---~~~~~~~ 116 (201)
T 2q3h_A 63 ---V------------DGRPVRLQLCDTAGQDEFDKLRP-------L-CYTNTDIFLLCFSVVSPSSFQN---VSEKWVP 116 (201)
T ss_dssp ---E------------TTEEEEEEEEECCCSTTCSSSGG-------G-GGTTCSEEEEEEETTCHHHHHH---HHHTHHH
T ss_pred ---E------------CCEEEEEEEEECCCCHHHHHHhH-------h-hcCCCcEEEEEEECCCHHHHHH---HHHHHHH
Confidence 0 01225678999999977532111 0 1134799999999975332211 1001222
Q ss_pred HHhh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 226 ILYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 226 ~l~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
.+.. .++|++||+||+|+........... .. .. ..+....+..+...++..+++++||++|.|+.+
T Consensus 117 ~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~------~~---~~---~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 184 (201)
T 2q3h_A 117 EIRCHCPKAPIILVGTQSDLREDVKVLIELD------KC---KE---KPVPEEAAKLLAEEIKAASYIECSALTQKNLKE 184 (201)
T ss_dssp HHHHHCSSSCEEEEEECGGGGGCHHHHHHHH------TT---TC---CCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHH
T ss_pred HHHHhCCCCCEEEEEECHhhhhchhhhhhhc------cc---cc---ccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHH
Confidence 2222 3899999999999976432111100 00 00 000000011111223334799999999999999
Q ss_pred HHHHHHHHHHHH
Q 014354 304 YFKAVEESAQEF 315 (426)
Q Consensus 304 l~~~l~~~~~~~ 315 (426)
++++|.+.+.+.
T Consensus 185 l~~~l~~~~~~~ 196 (201)
T 2q3h_A 185 VFDAAIVAGIQY 196 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999887654
No 59
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.73 E-value=2e-18 Score=153.92 Aligned_cols=167 Identities=16% Similarity=0.115 Sum_probs=95.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+.++|+|+|.+|||||||+|+|++..+.. ..+.++..... ..+.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~------------------~~~~---- 48 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVD--------------SYDPTIENTFT------------------KLIT---- 48 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCS--------------CCCTTCCEEEE------------------EEEE----
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCC--------------CCCCCccccEE------------------EEEE----
Confidence 45789999999999999999999765332 11111100000 0000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
. ....+.+.||||||+.++...... ....+|++++|+|+...........-...+...+
T Consensus 49 -~------------~~~~~~~~l~Dt~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 107 (181)
T 3t5g_A 49 -V------------NGQEYHLQLVDTAGQDEYSIFPQT--------YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV 107 (181)
T ss_dssp -E------------TTEEEEEEEEECCCCCTTCCCCGG--------GTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC
T ss_pred -E------------CCEEEEEEEEeCCCchhhhHHHHH--------HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 0 012357899999999775211110 0134799999999975322111110001112222
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...++|++||+||+|+....... ......+. .. ...+++++||++|.|+.+++.+
T Consensus 108 ~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 108 GKVQIPIMLVGNKKDLHMERVIS--YEEGKALA----------------------ES-WNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp ----CCEEEEEECTTCTTTCCSC--HHHHHHHH----------------------HH-TTCEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECccchhcceec--HHHHHHHH----------------------HH-hCCcEEEEecCCCCCHHHHHHH
Confidence 24578999999999997543211 01111111 11 1357999999999999999999
Q ss_pred HHHHHHHHH
Q 014354 308 VEESAQEFM 316 (426)
Q Consensus 308 l~~~~~~~~ 316 (426)
|.+.+....
T Consensus 163 l~~~~~~~~ 171 (181)
T 3t5g_A 163 IILEAEKMD 171 (181)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHhc
Confidence 998876544
No 60
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=1.4e-17 Score=152.47 Aligned_cols=176 Identities=14% Similarity=0.141 Sum_probs=98.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
.....+|+|+|.+|||||||+|+|++..+..... | ++...... .+..
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-------~-------t~~~~~~~-----------------~~~~-- 68 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYV-------P-------TVFENYVA-----------------DIEV-- 68 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC---------------------CCEEEE-----------------EEEE--
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCC-------C-------cccceEEE-----------------EEEE--
Confidence 3445789999999999999999999876542111 0 10000000 0000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
......+.||||||+.++...... ....+|++++|+|+..... +......+..
T Consensus 69 ----------------~~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~ 121 (207)
T 2fv8_A 69 ----------------DGKQVELALWDTAGQEDYDRLRPL--------SYPDTDVILMCFSVDSPDS---LENIPEKWVP 121 (207)
T ss_dssp ----------------TTEEEEEEEEECTTCTTCTTTGGG--------GCTTCCEEEEEEETTCHHH---HHHHHHTHHH
T ss_pred ----------------CCEEEEEEEEECCCcHHHHHHHHh--------hcCCCCEEEEEEECCCHHH---HHHHHHHHHH
Confidence 012357899999999775211110 1134799999999865321 1111011222
Q ss_pred HHhh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 226 ILYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 226 ~l~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
.+.. .++|+|+|+||+|+.......+....+. .. .+....+..+...+...+++++||++|.|+++
T Consensus 122 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-------~~-----~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~e 189 (207)
T 2fv8_A 122 EVKHFCPNVPIILVANKKDLRSDEHVRTELARMK-------QE-----PVRTDDGRAMAVRIQAYDYLECSAKTKEGVRE 189 (207)
T ss_dssp HHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTT-------CC-----CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHH
T ss_pred HHHHhCCCCCEEEEEEchhhhccccchhhhhhcc-------cC-----CCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHH
Confidence 2332 3799999999999986543222211110 00 00011111111122334799999999999999
Q ss_pred HHHHHHHHHH
Q 014354 304 YFKAVEESAQ 313 (426)
Q Consensus 304 l~~~l~~~~~ 313 (426)
++++|.+.+.
T Consensus 190 l~~~l~~~i~ 199 (207)
T 2fv8_A 190 VFETATRAAL 199 (207)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 61
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.73 E-value=1e-17 Score=152.70 Aligned_cols=169 Identities=16% Similarity=0.171 Sum_probs=90.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+++|++|||||||+++|++..+.. ..|.+. . +.+.+.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~--------~~~t~~----~----------------------~~~~~~--- 65 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ--------HVPTLH----P----------------------TSEELT--- 65 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--------------CCCC----C----------------------SCEEEE---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc--------cCCCCC----c----------------------eeEEEE---
Confidence 355789999999999999999998765321 001110 0 001011
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
..+.++.+|||||+.++..... ..+ ..+|++++|+|+....+ +..........
T Consensus 66 ----------------~~~~~l~i~Dt~G~~~~~~~~~------~~~--~~~d~~i~v~D~~~~~s---~~~~~~~~~~~ 118 (198)
T 1f6b_A 66 ----------------IAGMTFTTFDLGGHIQARRVWK------NYL--PAINGIVFLVDCADHER---LLESKEELDSL 118 (198)
T ss_dssp ----------------ETTEEEEEEEECC----CCGGG------GGG--GGCSEEEEEEETTCGGG---HHHHHHHHHHH
T ss_pred ----------------ECCEEEEEEECCCcHhhHHHHH------HHH--hcCCEEEEEEECCCHHH---HHHHHHHHHHH
Confidence 1336889999999876521100 011 24799999999975432 21111111222
Q ss_pred Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhh--hHhhhhcCCceEEeecccCCCH
Q 014354 227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSL--ALDEFYKNLKSVGVSSVSGAGI 301 (426)
Q Consensus 227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~vv~vSA~~g~gv 301 (426)
+. ..++|+++|+||+|+.......+..+.+. ... .....+. +........+++++||++|.|+
T Consensus 119 ~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~----~~~--------~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 186 (198)
T 1f6b_A 119 MTDETIANVPILILGNKIDRPEAISEERLREMFG----LYG--------QTTGKGSVSLKELNARPLEVFMCSVLKRQGY 186 (198)
T ss_dssp HTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHT----CTT--------TCCCSSCCCTTTCCSCCEEEEECBTTTTBSH
T ss_pred HhCcccCCCcEEEEEECCCccccCCHHHHHHHhC----ccc--------ccccccccccccccCceEEEEEEECCCCCCH
Confidence 22 25799999999999976321111211110 000 0000000 0000112357999999999999
Q ss_pred HHHHHHHHHH
Q 014354 302 EAYFKAVEES 311 (426)
Q Consensus 302 ~~l~~~l~~~ 311 (426)
++++++|.+.
T Consensus 187 ~~l~~~l~~~ 196 (198)
T 1f6b_A 187 GEGFRWMAQY 196 (198)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999998753
No 62
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=3.8e-18 Score=153.62 Aligned_cols=168 Identities=17% Similarity=0.206 Sum_probs=101.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|.+|||||||+|+|++..+..... |.. +...... .+..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-------~t~-----~~~~~~~------------------~~~~---- 59 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELA-------ATI-----GVDFKVK------------------TISV---- 59 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC-------CCC-----SEEEEEE------------------EEEE----
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCC-------Ccc-----ceEEEEE------------------EEEE----
Confidence 45789999999999999999999876432110 000 0000000 0000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
......+.||||||+.++.. . ....+ ..+|++|+|+|+........ ...++..+
T Consensus 60 --------------~~~~~~~~i~Dt~G~~~~~~---~---~~~~~--~~~d~ii~v~d~~~~~s~~~----~~~~~~~i 113 (195)
T 1x3s_A 60 --------------DGNKAKLAIWDTAGQERFRT---L---TPSYY--RGAQGVILVYDVTRRDTFVK----LDNWLNEL 113 (195)
T ss_dssp --------------TTEEEEEEEEEECSSGGGCC---S---HHHHH--TTCCEEEEEEETTCHHHHHT----HHHHHHHH
T ss_pred --------------CCeEEEEEEEeCCCchhhhh---h---hHHHh--ccCCEEEEEEECcCHHHHHH----HHHHHHHH
Confidence 01236789999999876521 1 11112 35799999999975422111 11222223
Q ss_pred hh----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 228 YK----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 228 ~~----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
.. .++|++||+||+|+......... ...+.. . ...+++++||++|.|+.+
T Consensus 114 ~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~---~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 114 ETYCTRNDIVNMLVGNKIDKENREVDRNE---GLKFAR---------------------K--HSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp TTCCSCSCCEEEEEEECTTSSSCCSCHHH---HHHHHH---------------------H--TTCEEEECCTTTCTTHHH
T ss_pred HHhcCcCCCcEEEEEECCcCcccccCHHH---HHHHHH---------------------H--cCCEEEEecCCCCCCHHH
Confidence 32 46899999999999543211111 111100 1 135799999999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 014354 304 YFKAVEESAQEFMETYKA 321 (426)
Q Consensus 304 l~~~l~~~~~~~~~~~~~ 321 (426)
++++|.+.+...++.++.
T Consensus 168 l~~~l~~~~~~~~~~~~~ 185 (195)
T 1x3s_A 168 AFEELVEKIIQTPGLWES 185 (195)
T ss_dssp HHHHHHHHHHTSGGGTCC
T ss_pred HHHHHHHHHHhhhhhhcc
Confidence 999999988876665554
No 63
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=8.8e-18 Score=149.82 Aligned_cols=162 Identities=22% Similarity=0.231 Sum_probs=94.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
++..+|+|+|++|||||||+++|++..+.. ..|.+. +. .....
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------~~~t~~-------~~----------------------~~~~~ 58 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVT--------TKPTIG-------FN----------------------VETLS 58 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEE--------ECSSTT-------CC----------------------EEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCc--------cCCcCc-------cc----------------------eEEEE
Confidence 467899999999999999999999765311 011110 00 00000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
..+..+.+|||||+.++..... .. ...+|++++|+|+....+..... ......
T Consensus 59 ----------------~~~~~~~i~Dt~G~~~~~~~~~------~~--~~~~d~ii~v~d~~~~~s~~~~~---~~~~~~ 111 (183)
T 1moz_A 59 ----------------YKNLKLNVWDLGGQTSIRPYWR------CY--YADTAAVIFVVDSTDKDRMSTAS---KELHLM 111 (183)
T ss_dssp ----------------ETTEEEEEEEEC----CCTTGG------GT--TTTEEEEEEEEETTCTTTHHHHH---HHHHHH
T ss_pred ----------------ECCEEEEEEECCCCHhHHHHHH------HH--hccCCEEEEEEECCCHHHHHHHH---HHHHHH
Confidence 1236889999999976521110 01 13479999999997653322211 111122
Q ss_pred Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
+. ..+.|+++|+||+|+.......++.+.+. ... ......+++++||++|.|+.+
T Consensus 112 ~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~---------------------~~~-~~~~~~~~~~~Sa~~~~gi~~ 169 (183)
T 1moz_A 112 LQEEELQDAALLVFANKQDQPGALSASEVSKELN---------------------LVE-LKDRSWSIVASSAIKGEGITE 169 (183)
T ss_dssp TTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTT---------------------TTT-CCSSCEEEEEEBGGGTBTHHH
T ss_pred HcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhC---------------------ccc-ccCCceEEEEccCCCCcCHHH
Confidence 22 35789999999999976432222211110 000 001224799999999999999
Q ss_pred HHHHHHHHHHH
Q 014354 304 YFKAVEESAQE 314 (426)
Q Consensus 304 l~~~l~~~~~~ 314 (426)
++++|.+.+.+
T Consensus 170 l~~~l~~~~~~ 180 (183)
T 1moz_A 170 GLDWLIDVIKE 180 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 64
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.73 E-value=5.2e-18 Score=152.23 Aligned_cols=162 Identities=20% Similarity=0.287 Sum_probs=96.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+|+|++|||||||+++|++..+.. ..|... +. .....
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~--------~~~t~g-------~~----------------------~~~~~ 56 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH--------ITPTQG-------FN----------------------IKSVQ 56 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE--------EEEETT-------EE----------------------EEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc--------ccCcCC-------eE----------------------EEEEE
Confidence 356899999999999999999999874321 001000 00 00000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
..+..+.+|||||+..+. ......+ ..+|++++|+|+....+ +..........
T Consensus 57 ----------------~~~~~l~i~Dt~G~~~~~------~~~~~~~--~~~~~~i~v~d~~~~~s---~~~~~~~~~~~ 109 (181)
T 1fzq_A 57 ----------------SQGFKLNVWDIGGQRKIR------PYWRSYF--ENTDILIYVIDSADRKR---FEETGQELTEL 109 (181)
T ss_dssp ----------------ETTEEEEEEECSSCGGGH------HHHHHHH--TTCSEEEEEEETTCGGG---HHHHHHHHHHH
T ss_pred ----------------ECCEEEEEEECCCCHHHH------HHHHHHh--CCCCEEEEEEECcCHHH---HHHHHHHHHHH
Confidence 123678999999997651 1111222 35799999999875432 11111111122
Q ss_pred Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
+. ..++|+++|+||+|+.......++.+.+ +... ......+++++||++|.|+.+
T Consensus 110 ~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~---------------------~~~~-~~~~~~~~~~~Sa~~g~gi~~ 167 (181)
T 1fzq_A 110 LEEEKLSCVPVLIFANKQDLLTAAPASEIAEGL---------------------NLHT-IRDRVWQIQSCSALTGEGVQD 167 (181)
T ss_dssp TTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHT---------------------TGGG-CCSSCEEEEECCTTTCTTHHH
T ss_pred HhChhhcCCCEEEEEECcCcccCCCHHHHHHHh---------------------Cchh-ccCCceEEEEccCCCCCCHHH
Confidence 22 2578999999999998653222221111 0000 001234799999999999999
Q ss_pred HHHHHHHHHHH
Q 014354 304 YFKAVEESAQE 314 (426)
Q Consensus 304 l~~~l~~~~~~ 314 (426)
++++|.+.+.+
T Consensus 168 l~~~l~~~~~~ 178 (181)
T 1fzq_A 168 GMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHHHHh
Confidence 99999876543
No 65
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.73 E-value=1.1e-17 Score=146.23 Aligned_cols=163 Identities=15% Similarity=0.187 Sum_probs=92.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+++|.+|||||||+|+|++..+... .+.++....... +..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--------------~~~t~~~~~~~~-----------------~~~---- 47 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVED--------------YEPTKADSYRKK-----------------VVL---- 47 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSC--------------CCTTCCEEEEEE-----------------EEE----
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCC--------------CCCCcceEEEEE-----------------EEE----
Confidence 347899999999999999999998764321 111110000000 000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHH-HHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML-YACSI 226 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l-~~~~~ 226 (426)
......+.||||||+.++. ......+ ..+|++++|+|+......... ...+ .+...
T Consensus 48 --------------~~~~~~~~l~D~~G~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~ 104 (168)
T 1u8z_A 48 --------------DGEEVQIDILDTAGQEDYA------AIRDNYF--RSGEGFLCVFSITEMESFAAT-ADFREQILRV 104 (168)
T ss_dssp --------------TTEEEEEEEEECCC---CH------HHHHHHH--HHCSEEEEEEETTCHHHHHHH-HHHHHHHHHH
T ss_pred --------------CCEEEEEEEEECCCcchhH------HHHHHHh--hcCCEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence 0123578999999987652 1111222 236899999999753221111 1101 11111
Q ss_pred HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
....++|+++|+||+|+....... ......+.. . ...+++++||++|.|+.++++
T Consensus 105 ~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~~ 159 (168)
T 1u8z_A 105 KEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAD---------------------Q--WNVNYVETSAKTRANVDKVFF 159 (168)
T ss_dssp HCCTTSCEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H--HTCEEEECCTTTCTTHHHHHH
T ss_pred cCCCCCcEEEEEECccccccCccC--HHHHHHHHH---------------------H--cCCeEEEeCCCCCCCHHHHHH
Confidence 112478999999999987543210 011111100 1 125799999999999999999
Q ss_pred HHHHHHH
Q 014354 307 AVEESAQ 313 (426)
Q Consensus 307 ~l~~~~~ 313 (426)
+|.+.+.
T Consensus 160 ~l~~~i~ 166 (168)
T 1u8z_A 160 DLMREIR 166 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
No 66
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=1.1e-17 Score=148.63 Aligned_cols=168 Identities=19% Similarity=0.232 Sum_probs=94.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+|+|.+|||||||+|+|++..+... ...+ +..++... ..+..
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~------------~~~~-t~~~~~~~-----------------~~~~~-- 55 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG------------TFIS-TVGIDFRN-----------------KVLDV-- 55 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCC------------CCCC-CCSCEEEE-----------------EEEEE--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCC------------CcCC-ceeeEEEE-----------------EEEEE--
Confidence 3557899999999999999999998765321 0001 11110000 00000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
. .....+.||||||+.++.. .....+ ..+|++++|+|+....+... ....+..+..
T Consensus 56 --~-------------~~~~~~~~~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~~~-~~~~~~~i~~ 111 (180)
T 2g6b_A 56 --D-------------GVKVKLQMWDTAGQERFRS------VTHAYY--RDAHALLLLYDVTNKASFDN-IQAWLTEIHE 111 (180)
T ss_dssp --T-------------TEEEEEEEEECCCC--------------CCG--GGCSEEEEEEETTCHHHHHT-HHHHHHHHHH
T ss_pred --C-------------CEEEEEEEEeCCCcHHHHH------HHHHHc--cCCCEEEEEEECCCHHHHHH-HHHHHHHHHH
Confidence 0 1235789999999866421 111111 34799999999976432111 1111111111
Q ss_pred HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
....++|++||+||+|+....... ......+.. .+ ..+++++||++|.|+.++++
T Consensus 112 ~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~----------------------~~-~~~~~~~Sa~~~~gi~~l~~ 166 (180)
T 2g6b_A 112 YAQHDVALMLLGNKVDSAHERVVK--REDGEKLAK----------------------EY-GLPFMETSAKTGLNVDLAFT 166 (180)
T ss_dssp HSCTTCEEEEEEECCSTTSCCCSC--HHHHHHHHH----------------------HH-TCCEEECCTTTCTTHHHHHH
T ss_pred hCCCCCcEEEEEECcccCcccccC--HHHHHHHHH----------------------Hc-CCeEEEEeCCCCCCHHHHHH
Confidence 223578999999999998643211 001111110 11 25799999999999999999
Q ss_pred HHHHHHHHH
Q 014354 307 AVEESAQEF 315 (426)
Q Consensus 307 ~l~~~~~~~ 315 (426)
+|.+.+...
T Consensus 167 ~l~~~~~~~ 175 (180)
T 2g6b_A 167 AIAKELKRR 175 (180)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 998877543
No 67
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.72 E-value=1.1e-17 Score=151.51 Aligned_cols=165 Identities=17% Similarity=0.191 Sum_probs=93.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+++|++|||||||+++|++..+.. ..|.... . .+.+.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~--------~~~t~~~----~----------------------~~~~~--- 63 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT--------LQPTWHP----T----------------------SEELA--- 63 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC--------CCCCCSC----E----------------------EEEEE---
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc--------cccCCCC----C----------------------eEEEE---
Confidence 345689999999999999999999875431 0011100 0 00000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
..+..+.+|||||+.++..... ..+ ..+|++++|+|+....+... ........
T Consensus 64 ----------------~~~~~~~i~Dt~G~~~~~~~~~------~~~--~~~d~~i~v~d~~~~~s~~~---~~~~~~~~ 116 (190)
T 1m2o_B 64 ----------------IGNIKFTTFDLGGHIQARRLWK------DYF--PEVNGIVFLVDAADPERFDE---ARVELDAL 116 (190)
T ss_dssp ----------------ETTEEEEEEECCCSGGGTTSGG------GGC--TTCCEEEEEEETTCGGGHHH---HHHHHHHH
T ss_pred ----------------ECCEEEEEEECCCCHHHHHHHH------HHH--hcCCEEEEEEECCChHHHHH---HHHHHHHH
Confidence 1236889999999977521100 011 34799999999976432211 11111122
Q ss_pred Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
+. ..++|+++|+||+|+.......++.+.+. . .... ..+. + ......+++++||++|.|+.+
T Consensus 117 ~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~----~---~~~~------~~~~-~-~~~~~~~~~~~Sa~~g~gi~~ 181 (190)
T 1m2o_B 117 FNIAELKDVPFVILGNKIDAPNAVSEAELRSALG----L---LNTT------GSQR-I-EGQRPVEVFMCSVVMRNGYLE 181 (190)
T ss_dssp HTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT----C---SSCC------C----C-CSSCCEEEEECBTTTTBSHHH
T ss_pred HcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhC----C---cccc------cccc-c-cccceEEEEEeECCcCCCHHH
Confidence 21 35799999999999976321111211110 0 0000 0000 0 011345799999999999999
Q ss_pred HHHHHHH
Q 014354 304 YFKAVEE 310 (426)
Q Consensus 304 l~~~l~~ 310 (426)
++++|.+
T Consensus 182 l~~~l~~ 188 (190)
T 1m2o_B 182 AFQWLSQ 188 (190)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999865
No 68
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1.3e-17 Score=150.61 Aligned_cols=174 Identities=14% Similarity=0.099 Sum_probs=97.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|.+|||||||+++|++..+... ...+....... .+..
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~--------------~~~t~~~~~~~-----------------~~~~---- 61 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEE--------------YVPTVFDHYAV-----------------SVTV---- 61 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCS--------------CCCSSCCCEEE-----------------EEES----
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCCcccceeEE-----------------EEEE----
Confidence 457999999999999999999998754321 11111000000 0000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
......+.||||||+.++..... . ....+|++++|+|+....+ +......++..+
T Consensus 62 --------------~~~~~~~~i~D~~G~~~~~~~~~-------~-~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~ 116 (194)
T 2atx_A 62 --------------GGKQYLLGLYDTAGQEDYDRLRP-------L-SYPMTDVFLICFSVVNPAS---FQNVKEEWVPEL 116 (194)
T ss_dssp --------------SSCEEEEEEECCCCSSSSTTTGG-------G-GCTTCSEEEEEEETTCHHH---HHHHHHTHHHHH
T ss_pred --------------CCEEEEEEEEECCCCcchhHHHH-------H-hcCCCCEEEEEEECCCHHH---HHHHHHHHHHHH
Confidence 01235788999999977521110 0 1134799999999865322 111110122223
Q ss_pred hhc--cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 228 YKT--RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 228 ~~~--~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
... ++|++||+||+|+............. .. ..+....+..+...++..+++++||++|.|+.+++
T Consensus 117 ~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-------~~-----~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 184 (194)
T 2atx_A 117 KEYAPNVPFLLIGTQIDLRDDPKTLARLNDM-------KE-----KPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184 (194)
T ss_dssp HHHSTTCCEEEEEECTTSTTCHHHHHHHTTT-------TC-----CCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHH
T ss_pred HHhCCCCCEEEEEEChhhcccccchhhcccc-------cC-----cccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHH
Confidence 332 79999999999998754221111000 00 00000001111111233479999999999999999
Q ss_pred HHHHHHHH
Q 014354 306 KAVEESAQ 313 (426)
Q Consensus 306 ~~l~~~~~ 313 (426)
++|.+.+.
T Consensus 185 ~~l~~~i~ 192 (194)
T 2atx_A 185 DEAIIAIL 192 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99987653
No 69
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.72 E-value=2.9e-17 Score=144.14 Aligned_cols=163 Identities=17% Similarity=0.204 Sum_probs=94.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..+|+|+|++|||||||+|+|++..+..... |... ..... ..+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-------~~~~-----~~~~~-------------------~~~~~---- 47 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFI-------TTIG-----IDFKI-------------------KTVDI---- 47 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------------------CCEEE-------------------EEEES----
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCC-------Cccc-----eeEEE-------------------EEEEE----
Confidence 4689999999999999999999876432110 0000 00000 00000
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~ 228 (426)
. .....+.||||||+.++... . ...+ ..+|++++|+|+....+... ....+..+....
T Consensus 48 ~-------------~~~~~~~l~D~~G~~~~~~~--~----~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~ 105 (170)
T 1g16_A 48 N-------------GKKVKLQIWDTAGQERFRTI--T----TAYY--RGAMGIILVYDITDERTFTN-IKQWFKTVNEHA 105 (170)
T ss_dssp S-------------SCEEEEEEECCTTGGGTSCC--C----HHHH--TTEEEEEEEEETTCHHHHHT-HHHHHHHHHHHS
T ss_pred C-------------CEEEEEEEEeCCCChhhhhh--H----HHHh--ccCCEEEEEEECCCHHHHHH-HHHHHHHHHHhc
Confidence 0 12357899999998765211 1 1111 34699999999875332111 111111111112
Q ss_pred hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l 308 (426)
..++|+++|+||+|+.......+.. ..+.. . + ..+++++||++|.|+.+++.+|
T Consensus 106 ~~~~piilv~nK~Dl~~~~~~~~~~---~~~~~---------------------~-~-~~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 106 NDEAQLLLVGNKSDMETRVVTADQG---EALAK---------------------E-L-GIPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp CTTCEEEEEEECTTCTTCCSCHHHH---HHHHH---------------------H-H-TCCEEECBTTTTBSHHHHHHHH
T ss_pred CCCCcEEEEEECccCCcCccCHHHH---HHHHH---------------------H-c-CCeEEEEECCCCCCHHHHHHHH
Confidence 2478999999999995432111111 11110 1 1 2579999999999999999999
Q ss_pred HHHHHH
Q 014354 309 EESAQE 314 (426)
Q Consensus 309 ~~~~~~ 314 (426)
.+.+.+
T Consensus 160 ~~~~~~ 165 (170)
T 1g16_A 160 AKLIQE 165 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
No 70
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.72 E-value=7.9e-17 Score=144.88 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=72.3
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchh--hhhhHHHHHHHH--hhccCCeEEEEec
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT--FMSNMLYACSIL--YKTRLPLVLAFNK 240 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~--~~~~~l~~~~~l--~~~~~P~IlVlNK 240 (426)
...+.||||||+.++. .+...+ ...+|++|+|+|+........ .+.....++..+ ...++|+|||+||
T Consensus 73 ~~~~~i~Dt~G~~~~~-------~~~~~~-~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK 144 (198)
T 3t1o_A 73 KTRFHLYTVPGQVFYN-------ASRKLI-LRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNK 144 (198)
T ss_dssp EEEEEEEECCSCCSCS-------HHHHHH-TTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEEC
T ss_pred ceEEEEEeCCChHHHH-------HHHHHH-HhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEc
Confidence 3578999999997752 111111 145799999999974322211 111111122212 1257899999999
Q ss_pred CCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHH
Q 014354 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF 315 (426)
Q Consensus 241 iDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~ 315 (426)
+|+.......+..+.. ..++..+++++||++|.|+.+++++|.+.+...
T Consensus 145 ~Dl~~~~~~~~~~~~~--------------------------~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 145 RDLPDALPVEMVRAVV--------------------------DPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp TTSTTCCCHHHHHHHH--------------------------CTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred hhcccccCHHHHHHHH--------------------------HhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 9997652211111111 112323899999999999999999999877654
No 71
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.72 E-value=3.3e-17 Score=145.39 Aligned_cols=170 Identities=16% Similarity=0.169 Sum_probs=92.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+|+|++|||||||+++|++..+..... |......... .+..
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-------~~~~~~~~~~------------------------~~~~-- 52 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYK-------ATIGADFLTK------------------------EVTV-- 52 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC----------CCCSCEEE------------------------EECC--
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccC-------CccceEEEEE------------------------EEEE--
Confidence 356789999999999999999999876442211 0000000000 0000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
. ......+.||||||+..+. .+... ....+|++++|+|+......... ...+..+..
T Consensus 53 --~------------~~~~~~~~l~Dt~G~~~~~-------~~~~~-~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~ 109 (182)
T 1ky3_A 53 --D------------GDKVATMQVWDTAGQERFQ-------SLGVA-FYRGADCCVLVYDVTNASSFENI-KSWRDEFLV 109 (182)
T ss_dssp --S------------SSCCEEEEEECCC-----------------C-CSTTCCEEEEEEETTCHHHHHTH-HHHHHHHHH
T ss_pred --c------------CCcEEEEEEEECCCChHhh-------hhhHH-HhhcCCEEEEEEECCChHHHHHH-HHHHHHHHH
Confidence 0 0123578999999986642 11110 11347999999999764321111 011111111
Q ss_pred Hh----hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354 227 LY----KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 227 l~----~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~ 302 (426)
.. ..++|+++|+||+|+....... .......+. ......+++++||++|.|+.
T Consensus 110 ~~~~~~~~~~p~ilv~nK~Dl~~~~~~v-~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~gi~ 166 (182)
T 1ky3_A 110 HANVNSPETFPFVILGNKIDAEESKKIV-SEKSAQELA----------------------KSLGDIPLFLTSAKNAINVD 166 (182)
T ss_dssp HHCCSCTTTCCEEEEEECTTSCGGGCCS-CHHHHHHHH----------------------HHTTSCCEEEEBTTTTBSHH
T ss_pred HhcccCcCCCcEEEEEECCccccccccC-CHHHHHHHH----------------------HhcCCCeEEEEecCCCCCHH
Confidence 11 1578999999999996543110 001111111 11235679999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014354 303 AYFKAVEESAQEF 315 (426)
Q Consensus 303 ~l~~~l~~~~~~~ 315 (426)
+++++|.+.+.+.
T Consensus 167 ~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 167 TAFEEIARSALQQ 179 (182)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999998877543
No 72
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.72 E-value=1.1e-16 Score=159.72 Aligned_cols=169 Identities=18% Similarity=0.293 Sum_probs=103.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+.++|+++|++|||||||+|+|++.... +...++++. ... -+.+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~-------------~~~~~~~t~----~~~--------------~~~~~--- 210 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE-------------IASYPFTTR----GIN--------------VGQFE--- 210 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE-------------EECCTTCSS----CEE--------------EEEEE---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-------------cCCCCCeee----cee--------------EEEEE---
Confidence 45679999999999999999999987521 222333320 000 00000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchH--HHHHHHHHhcCCcEEEEEEeCCCCC--CchhhhhhHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG--AIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLY 222 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~--~~l~~~~~~~~~d~vl~VVDa~~~~--~~~~~~~~~l~ 222 (426)
..+..+.+|||||+.++..+.... ...... ....+|++++|+|+.... +.... ..
T Consensus 211 ----------------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~ad~illV~D~s~~~~~~~~~~----~~ 269 (357)
T 2e87_A 211 ----------------DGYFRYQIIDTPGLLDRPISERNEIEKQAILA-LRYLGNLIIYIFDPSEHCGFPLEEQ----IH 269 (357)
T ss_dssp ----------------ETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG-GGGTCSEEEEEECTTCTTSSCHHHH----HH
T ss_pred ----------------ecCceEEEEeCCCccccchhhhhHHHHHHHHH-HHhcCCEEEEEEeCCccccCCHHHH----HH
Confidence 123578999999997753222111 111111 123589999999987644 22211 11
Q ss_pred HHHHHhh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC
Q 014354 223 ACSILYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300 (426)
Q Consensus 223 ~~~~l~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g 300 (426)
++..+.. .++|+|+|+||+|+............+. ....+++++||++|+|
T Consensus 270 ~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~---------------------------~~~~~~~~iSA~~g~g 322 (357)
T 2e87_A 270 LFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVK---------------------------EKGLNPIKISALKGTG 322 (357)
T ss_dssp HHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHH---------------------------HTTCCCEECBTTTTBT
T ss_pred HHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHH---------------------------hcCCCeEEEeCCCCcC
Confidence 1222221 2799999999999988654322211110 1236799999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 014354 301 IEAYFKAVEESAQEFME 317 (426)
Q Consensus 301 v~~l~~~l~~~~~~~~~ 317 (426)
+++++++|.+.+.....
T Consensus 323 i~~l~~~i~~~l~~~~~ 339 (357)
T 2e87_A 323 IDLVKEEIIKTLRPLAE 339 (357)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999998866433
No 73
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.72 E-value=1.2e-17 Score=145.35 Aligned_cols=157 Identities=18% Similarity=0.215 Sum_probs=93.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|+++|.+|||||||+|+|++...... .+.+........ +..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~--------------~~~~~~~~~~~~-----------------~~~------ 46 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDE--------------CDPTIEDSYRKQ-----------------VVI------ 46 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSC--------------CCTTCCEEEEEE-----------------EEE------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccc--------------cCCccceEEEEE-----------------EEE------
Confidence 5799999999999999999998754321 011110000000 000
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY- 228 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~- 228 (426)
....+.+.||||||+.++.. .....+ ..+|++++|+|+........ ...+...+.
T Consensus 47 ------------~~~~~~~~~~D~~G~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~~~~~----~~~~~~~i~~ 102 (166)
T 2ce2_X 47 ------------DGETCLLDILDTAGQEEYSA------MRDQYM--RTGEGFLCVFAINNTKSFED----IHQYREQIKR 102 (166)
T ss_dssp ------------TTEEEEEEEEECCCCSSCCH------HHHHHH--HHCSEEEEEEETTCHHHHHH----HHHHHHHHHH
T ss_pred ------------CCEEEEEEEEECCCchhhhH------HHHHhh--ccCCEEEEEEECCCHHHHHH----HHHHHHHHHH
Confidence 01235789999999876521 111122 23689999999864321111 111122222
Q ss_pred ---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 229 ---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 229 ---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
..++|+++|+||+|+............+ .. . + ..+++++||++|.|+.+++
T Consensus 103 ~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~---~~---------------------~-~-~~~~~~~Sa~~~~gi~~l~ 156 (166)
T 2ce2_X 103 VKDSDDVPMVLVGNKSDLAARTVESRQAQDL---AR---------------------S-Y-GIPYIETSAKTRQGVEDAF 156 (166)
T ss_dssp HHTCSCCCEEEEEECTTCSCCCSCHHHHHHH---HH---------------------H-H-TCCEEEECTTTCTTHHHHH
T ss_pred hcCCCCCcEEEEEEchhhhhcccCHHHHHHH---HH---------------------H-c-CCeEEEecCCCCCCHHHHH
Confidence 2379999999999998632211111111 11 1 1 2579999999999999999
Q ss_pred HHHHHHHH
Q 014354 306 KAVEESAQ 313 (426)
Q Consensus 306 ~~l~~~~~ 313 (426)
++|.+.+.
T Consensus 157 ~~l~~~~~ 164 (166)
T 2ce2_X 157 YTLVREIR 164 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987764
No 74
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.72 E-value=3.3e-17 Score=147.71 Aligned_cols=111 Identities=18% Similarity=0.225 Sum_probs=68.3
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH-hhccCCeEEEEecCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL-YKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l-~~~~~P~IlVlNKiDl~ 244 (426)
..+.||||||+.++.. . ....+ ..+|++++|+|+........ ...++..+ ...+.|+++|+||+|+.
T Consensus 93 ~~~~i~Dt~G~~~~~~---~---~~~~~--~~~d~~i~v~D~~~~~s~~~----~~~~~~~i~~~~~~piilv~NK~D~~ 160 (208)
T 3clv_A 93 IKFDIWDTAGQERYAS---I---VPLYY--RGATCAIVVFDISNSNTLDR----AKTWVNQLKISSNYIIILVANKIDKN 160 (208)
T ss_dssp EEEEEEECTTGGGCTT---T---HHHHH--TTCSEEEEEEETTCHHHHHH----HHHHHHHHHHHSCCEEEEEEECTTCC
T ss_pred eEEEEEECCCcHHHHH---H---HHHHh--cCCCEEEEEEECCCHHHHHH----HHHHHHHHHhhCCCcEEEEEECCCcc
Confidence 6789999999877521 1 11112 35799999999976432211 11122222 23459999999999932
Q ss_pred ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
..... ...+..+.. . ...+++++||++|.|+.+++++|.+.+..
T Consensus 161 ~~~~~---~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 161 KFQVD---ILEVQKYAQ---------------------D--NNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp -CCSC---HHHHHHHHH---------------------H--TTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cccCC---HHHHHHHHH---------------------H--cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 21111 111111111 1 13579999999999999999999887754
No 75
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.72 E-value=8.6e-17 Score=144.10 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=70.8
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh----ccCCeEEEEecC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK----TRLPLVLAFNKT 241 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~----~~~P~IlVlNKi 241 (426)
..+.||||||+.++. ......+ ..+|++++|+|+........ ...++..+.. .++|+++|+||+
T Consensus 70 ~~~~l~Dt~G~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s~~~----~~~~~~~i~~~~~~~~~piilv~nK~ 137 (195)
T 3bc1_A 70 IHLQLWDTAGLERFR------SLTTAFF--RDAMGFLLLFDLTNEQSFLN----VRNWISQLQMHAYSENPDIVLCGNKS 137 (195)
T ss_dssp EEEEEEEECCSGGGH------HHHHHTT--TTCSEEEEEEETTCHHHHHT----HHHHHHHHHHHSSSSSCCEEEEEECT
T ss_pred EEEEEEeCCCcHHHH------HHHHHHH--cCCCEEEEEEECCCHHHHHH----HHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 588999999996641 1111111 35799999999976432211 1112222221 578999999999
Q ss_pred CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHH
Q 014354 242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF 315 (426)
Q Consensus 242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~ 315 (426)
|+....... ......+.. .+ ..+++++||++|.|+.+++++|.+.+.+.
T Consensus 138 Dl~~~~~~~--~~~~~~~~~----------------------~~-~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 138 DLEDQRAVK--EEEARELAE----------------------KY-GIPYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp TCGGGCCSC--HHHHHHHHH----------------------HH-TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccccccccC--HHHHHHHHH----------------------Hc-CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 997542210 011111110 11 25799999999999999999999887654
No 76
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.72 E-value=3.3e-17 Score=147.83 Aligned_cols=165 Identities=15% Similarity=0.129 Sum_probs=97.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..+..+|+|+|.+|||||||+++|++..+..... +.. +...... .+..
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------~t~-----~~~~~~~------------------~~~~-- 65 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-------LTI-----GVEFGAR------------------MVNI-- 65 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC------------C-----CSSEEEE------------------EEEE--
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-------Ccc-----cceeEEE------------------EEEE--
Confidence 3456799999999999999999999876442110 000 0000000 0000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
......+.||||||+.++... . ...+ ..+|++++|+|+........ ...++.
T Consensus 66 ----------------~~~~~~~~i~Dt~G~~~~~~~--~----~~~~--~~~d~ii~v~d~~~~~s~~~----~~~~l~ 117 (191)
T 2a5j_A 66 ----------------DGKQIKLQIWDTAGQESFRSI--T----RSYY--RGAAGALLVYDITRRETFNH----LTSWLE 117 (191)
T ss_dssp ----------------TTEEEEEEEECCTTGGGTSCC--C----HHHH--TTCSEEEEEEETTCHHHHHT----HHHHHH
T ss_pred ----------------CCEEEEEEEEECCCchhhhhh--H----HHHh--ccCCEEEEEEECCCHHHHHH----HHHHHH
Confidence 012357899999998765211 1 1111 34799999999975322111 111222
Q ss_pred HHh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354 226 ILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 226 ~l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~ 302 (426)
.+. ..++|++||+||+|+....... ......+.. . ...+++++||++|.|+.
T Consensus 118 ~i~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 118 DARQHSSSNMVIMLIGNKSDLESRRDVK--REEGEAFAR---------------------E--HGLIFMETSAKTACNVE 172 (191)
T ss_dssp HHHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H--HTCEEEEECTTTCTTHH
T ss_pred HHHHhcCCCCCEEEEEECcccCCccccC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHH
Confidence 222 3478999999999997543210 011111110 1 12579999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014354 303 AYFKAVEESAQEF 315 (426)
Q Consensus 303 ~l~~~l~~~~~~~ 315 (426)
+++++|.+.+.+.
T Consensus 173 ~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 173 EAFINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877653
No 77
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.72 E-value=1.1e-17 Score=171.15 Aligned_cols=158 Identities=25% Similarity=0.300 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
++|+|+|.||||||||+|+|++...+. +...|++| ++... +.+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~------------v~~~~g~T----~d~~~--------------~~~~------ 47 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISI------------VEDTPGVT----RDRIY--------------SSAE------ 47 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC---------------------------CEE--------------EECT------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee------------ecCCCCCc----cceEE--------------EEEE------
Confidence 689999999999999999999876542 33344443 22110 0011
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH--hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~--~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
..+..+.||||||+.... ......+..... ...+|++|+|+|+..+....+. .+...+
T Consensus 48 -------------~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~-----~~~~~l 107 (436)
T 2hjg_A 48 -------------WLNYDFNLIDTGGIDIGD--EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADE-----EVAKIL 107 (436)
T ss_dssp -------------TCSSCCEEEC-----------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHH-----HHHHHH
T ss_pred -------------ECCceEEEEECCCCCCcc--hhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-----HHHHHH
Confidence 244689999999996321 111122222111 1347999999999988776542 234456
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhh--cCCceEEeecccCCCHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY--KNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~vv~vSA~~g~gv~~l~ 305 (426)
...++|++||+||+|+..... ... +++ +..+++++||++|.|+.+|+
T Consensus 108 ~~~~~pvilv~NK~D~~~~~~------~~~-------------------------~~~~lg~~~~~~iSA~~g~gv~~L~ 156 (436)
T 2hjg_A 108 YRTKKPVVLAVNKLDNTEMRA------NIY-------------------------DFYSLGFGEPYPISGTHGLGLGDLL 156 (436)
T ss_dssp TTCCSCEEEEEECCCC-----------CCC-------------------------SSGGGSSCCCEECBTTTTBTHHHHH
T ss_pred HHcCCCEEEEEECccCccchh------hHH-------------------------HHHHcCCCCeEEEeCcCCCChHHHH
Confidence 678899999999999875421 000 111 22478999999999999999
Q ss_pred HHHHHHHHH
Q 014354 306 KAVEESAQE 314 (426)
Q Consensus 306 ~~l~~~~~~ 314 (426)
+++.+.+++
T Consensus 157 ~~i~~~l~~ 165 (436)
T 2hjg_A 157 DAVAEHFKN 165 (436)
T ss_dssp HHHHHTGGG
T ss_pred HHHHHhcCc
Confidence 999887763
No 78
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=147.78 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=89.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|++|||||||+|+|++...... ...++.+ ... ..+.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~------------~~~~~~~-~~~-------------------~~~~---- 46 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL------------HEQLGED-VYE-------------------RTLT---- 46 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----------------CCCSSSS-EEE-------------------EEEE----
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccc------------cCccccc-eeE-------------------EEEE----
Confidence 457899999999999999999998764321 1111110 000 0000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
+. .....+.+|||||+.... ...+...+ ...++++++|+|.....+ +.. ...+...+
T Consensus 47 ~~-------------~~~~~~~~~D~~g~~~~~-----~~~~~~~~-~~~~~~~i~v~d~~~~~s---~~~-~~~~~~~l 103 (175)
T 2nzj_A 47 VD-------------GEDTTLVVVDTWEAEKLD-----KSWSQESC-LQGGSAYVIVYSIADRGS---FES-ASELRIQL 103 (175)
T ss_dssp ET-------------TEEEEEEEECCC------------CHHHHHT-TTSCSEEEEEEETTCHHH---HHH-HHHHHHHH
T ss_pred EC-------------CEEEEEEEEecCCCCccc-----hhhhHHhh-cccCCEEEEEEECCCHHH---HHH-HHHHHHHH
Confidence 00 123578999999986631 01111111 134789999999865322 111 11122222
Q ss_pred hh----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 228 YK----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 228 ~~----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
.. .++|+|+|+||+|+....... ......+.. . + ..+++++||++|.|+.+
T Consensus 104 ~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~g~gi~~ 158 (175)
T 2nzj_A 104 RRTHQADHVPIILVGNKADLARCREVS--VEEGRACAV---------------------V-F-DCKFIETSATLQHNVAE 158 (175)
T ss_dssp HHCC----CCEEEEEECTTCTTTCCSC--HHHHHHHHH---------------------H-H-TSEEEECBTTTTBSHHH
T ss_pred HHhhccCCCCEEEEEEChhhccccccC--HHHHHHHHH---------------------H-c-CCeEEEEecCCCCCHHH
Confidence 22 379999999999998643211 001111000 1 1 25799999999999999
Q ss_pred HHHHHHHHHHHH
Q 014354 304 YFKAVEESAQEF 315 (426)
Q Consensus 304 l~~~l~~~~~~~ 315 (426)
++++|.+.+...
T Consensus 159 l~~~l~~~~~~~ 170 (175)
T 2nzj_A 159 LFEGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999998877543
No 79
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.72 E-value=5.9e-18 Score=167.74 Aligned_cols=167 Identities=22% Similarity=0.298 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
+.|+|+|+||||||||+|+|++... .+..+|++| +.++-+++..
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~-------------~i~~~~ftT------------------l~p~~g~v~~----- 202 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKP-------------KIADYHFTT------------------LVPNLGMVET----- 202 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECC-------------EESSTTSSC------------------CCCCEEEEEC-----
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCC-------------ccccCCccc------------------cCceEEEEEe-----
Confidence 4699999999999999999998652 244555555 1222222221
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCccccc-chhchHHHHHHHHHhcCCcEEEEEEeCCCCC--CchhhhhhHHHHHHH
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIF-TWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI 226 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~-~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~--~~~~~~~~~l~~~~~ 226 (426)
.....++||||||+.+.. .+..+.....+.+ ..++++|+|+|++... .+.... ..+...
T Consensus 203 -------------~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i--~~~d~ll~VvD~s~~~~~~~~~~~---~~~~~e 264 (342)
T 1lnz_A 203 -------------DDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI--ERTRVIVHVIDMSGLEGRDPYDDY---LTINQE 264 (342)
T ss_dssp -------------SSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH--HHCCEEEEEEESSCSSCCCHHHHH---HHHHHH
T ss_pred -------------CCCceEEEecCCCCcccccccchhHHHHHHHH--HhccEEEEEEECCcccccChHHHH---HHHHHH
Confidence 122679999999987632 1223333333333 2369999999997632 222211 112222
Q ss_pred Hhh-----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354 227 LYK-----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (426)
Q Consensus 227 l~~-----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv 301 (426)
+.. .++|.+||+||+|+..... . +..+... +....+++++||++|.|+
T Consensus 265 L~~~~~~l~~~p~ilV~NK~Dl~~~~e---~---~~~l~~~---------------------l~~~~~v~~iSA~tg~gi 317 (342)
T 1lnz_A 265 LSEYNLRLTERPQIIVANKMDMPEAAE---N---LEAFKEK---------------------LTDDYPVFPISAVTREGL 317 (342)
T ss_dssp HHHSCSSTTTSCBCBEEECTTSTTHHH---H---HHHHHHH---------------------CCSCCCBCCCSSCCSSTT
T ss_pred HHHhhhhhcCCCEEEEEECccCCCCHH---H---HHHHHHH---------------------hhcCCCEEEEECCCCcCH
Confidence 222 4799999999999987542 1 1111111 111157899999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 014354 302 EAYFKAVEESAQEFME 317 (426)
Q Consensus 302 ~~l~~~l~~~~~~~~~ 317 (426)
++|+.+|.+.+.+.++
T Consensus 318 ~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 318 RELLFEVANQLENTPE 333 (342)
T ss_dssp HHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHhhCcc
Confidence 9999999988876544
No 80
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=147.84 Aligned_cols=167 Identities=14% Similarity=0.164 Sum_probs=99.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
....+|+|+|.+|||||||+|+|++....... .+.. ..+... ..+..
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-------------~~~~-~~~~~~-----------------~~~~~-- 60 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY-------------ISTI-GVDFKI-----------------RTIEL-- 60 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCC-------------CCCS-SEEEEE-----------------EEEEE--
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCC-------------CCcc-cceEEE-----------------EEEEE--
Confidence 34578999999999999999999987643211 1101 000000 00000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
......+.||||||+..+.. . ....+ ..+|++++|+|+........ ....+..+..
T Consensus 61 ---------------~~~~~~~~i~Dt~G~~~~~~---~---~~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~ 116 (196)
T 3tkl_A 61 ---------------DGKTIKLQIWDTAGQERFRT---I---TSSYY--RGAHGIIVVYDVTDQESFNN-VKQWLQEIDR 116 (196)
T ss_dssp ---------------TTEEEEEEEEEECCSGGGCT---T---HHHHH--TTCSEEEEEEETTCHHHHHT-HHHHHHHHHH
T ss_pred ---------------CCEEEEEEEEECCCcHhhhh---h---HHHHH--hhCCEEEEEEECcCHHHHHH-HHHHHHHHHH
Confidence 01225789999999876521 1 11122 45799999999976322111 1111111222
Q ss_pred HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
....++|+|||+||+|+........ .....+. .. ...+++++||++|.|+.+++.
T Consensus 117 ~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~----------------------~~-~~~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 117 YASENVNKLLVGNKCDLTTKKVVDY--TTAKEFA----------------------DS-LGIPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp HSCTTCEEEEEEECTTCTTTCCSCH--HHHHHHH----------------------HH-TTCCEEEECTTTCTTHHHHHH
T ss_pred hcCCCCCEEEEEECcccccccccCH--HHHHHHH----------------------HH-cCCcEEEEeCCCCCCHHHHHH
Confidence 2234789999999999986542210 0111111 11 235799999999999999999
Q ss_pred HHHHHHHHH
Q 014354 307 AVEESAQEF 315 (426)
Q Consensus 307 ~l~~~~~~~ 315 (426)
+|.+.+...
T Consensus 172 ~l~~~i~~~ 180 (196)
T 3tkl_A 172 TMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887664
No 81
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.72 E-value=2.6e-17 Score=148.11 Aligned_cols=164 Identities=13% Similarity=0.178 Sum_probs=97.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
....+|+|+|.+|||||||+|+|++..+..... +.. +...... .+..
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-------~t~-----~~~~~~~------------------~~~~--- 66 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFV-------STV-----GIDFKVK------------------TVYR--- 66 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC-------CCC-----CCEEEEE------------------EEEE---
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcC-------Cce-----eEEEEEE------------------EEEE---
Confidence 345799999999999999999999876432110 000 0000000 0000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
......+.||||||+..+..... .. ...+|++++|+|+..... +. ....++..
T Consensus 67 ---------------~~~~~~~~l~Dt~G~~~~~~~~~------~~--~~~~d~ii~v~d~~~~~s---~~-~~~~~~~~ 119 (189)
T 2gf9_A 67 ---------------HDKRIKLQIWDTAGQERYRTITT------AY--YRGAMGFLLMYDIANQES---FA-AVQDWATQ 119 (189)
T ss_dssp ---------------TTEEEEEEEEECCSCCSSCCSGG------GG--GTTCSEEEEEEETTCHHH---HH-THHHHHHH
T ss_pred ---------------CCeEEEEEEEeCCCcHHHhhhHH------Hh--ccCCCEEEEEEECCCHHH---HH-HHHHHHHH
Confidence 01235789999999876521110 01 134799999999865322 11 11122222
Q ss_pred Hhh---ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 227 LYK---TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 227 l~~---~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
+.. .++|++||+||+|+....... ......+.. . + ..+++++||++|.|+.+
T Consensus 120 i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~g~gi~~ 174 (189)
T 2gf9_A 120 IKTYSWDNAQVILVGNKCDLEDERVVP--AEDGRRLAD---------------------D-L-GFEFFEASAKENINVKQ 174 (189)
T ss_dssp HHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H-H-TCEEEECBTTTTBSHHH
T ss_pred HHHhcCCCCCEEEEEECcccccccCCC--HHHHHHHHH---------------------H-c-CCeEEEEECCCCCCHHH
Confidence 332 478999999999997643210 011111111 1 1 24799999999999999
Q ss_pred HHHHHHHHHHHH
Q 014354 304 YFKAVEESAQEF 315 (426)
Q Consensus 304 l~~~l~~~~~~~ 315 (426)
++++|.+.+.+.
T Consensus 175 l~~~l~~~i~~~ 186 (189)
T 2gf9_A 175 VFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
No 82
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.72 E-value=1.6e-17 Score=145.96 Aligned_cols=114 Identities=13% Similarity=0.081 Sum_probs=65.8
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh----hccCCeEEEEec
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY----KTRLPLVLAFNK 240 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~----~~~~P~IlVlNK 240 (426)
...+.+|||||+.++.. .+...+ ...+|++++|+|+....+ +... ...+..+. ..++|+++|+||
T Consensus 50 ~~~~~i~D~~g~~~~~~------~~~~~~-~~~~d~~i~v~d~~~~~s---~~~~-~~~~~~~~~~~~~~~~p~ilv~nK 118 (169)
T 3q85_A 50 EVTLIVYDIWEQGDAGG------WLQDHC-LQTGDAFLIVFSVTDRRS---FSKV-PETLLRLRAGRPHHDLPVILVGNK 118 (169)
T ss_dssp EEEEEEECCCCC--------------CHH-HHHCSEEEEEEETTCHHH---HHTH-HHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred EEEEEEEECCCccccch------hhhhhh-hccCCEEEEEEECCChHH---HHHH-HHHHHHHHhcccCCCCCEEEEeeC
Confidence 36788999999976521 011111 122689999999875321 1111 11111222 237999999999
Q ss_pred CCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 241 iDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
+|+....... ......+. .. ...+++++||++|.|+.+++++|.+.+..
T Consensus 119 ~Dl~~~~~~~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 119 SDLARSREVS--LEEGRHLA----------------------GT-LSCKHIETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp TTCGGGCCSC--HHHHHHHH----------------------HH-TTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cchhhcccCC--HHHHHHHH----------------------HH-cCCcEEEecCccCCCHHHHHHHHHHHHHh
Confidence 9997543211 00111111 11 13579999999999999999999887653
No 83
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.72 E-value=4.1e-17 Score=172.60 Aligned_cols=132 Identities=22% Similarity=0.332 Sum_probs=80.3
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~ 245 (426)
+.+.||||||+.++......+ ...+|++|+|+|+..++.++++ ..+..+...++|+|+|+||+|+..
T Consensus 70 ~~i~liDTPGhe~F~~~~~r~--------~~~aD~aILVvDa~~Gv~~qT~-----e~l~~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLRKRG--------GALADLAILIVDINEGFKPQTQ-----EALNILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp CEEEEECCCTTSCCTTSBCSS--------SBSCSEEEEEEETTTCCCHHHH-----HHHHHHHHTTCCEEEEEECGGGST
T ss_pred CCEEEEECCCcHHHHHHHHHH--------HhhCCEEEEEEECCCCccHhHH-----HHHHHHHHcCCeEEEEeccccccc
Confidence 469999999998874322211 1347999999999998877663 344456678899999999999974
Q ss_pred hHh--------------HHHHHHHHH----HHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 246 HEF--------------ALEWMQDFE----VFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 246 ~~~--------------~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
... ...+...+. .+...+... .+..... ..+..+....+++++||++|.|+.+|+++
T Consensus 137 ~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~-gl~~e~~----~~l~~~~~~vpvv~vSA~tG~GI~eLl~~ 211 (594)
T 1g7s_A 137 GWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEE-GFESERF----DRVTDFASQVSIIPISAITGEGIPELLTM 211 (594)
T ss_dssp TCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHT-TCEEEEG----GGCSCTTTEEEEEECCTTTCTTHHHHHHH
T ss_pred ccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHc-CcchHHH----HHHHhccCcceEEEEeccCCCCchhHHHH
Confidence 210 011111111 111110000 0000000 00011223458999999999999999999
Q ss_pred HHHHHHHH
Q 014354 308 VEESAQEF 315 (426)
Q Consensus 308 l~~~~~~~ 315 (426)
|...++..
T Consensus 212 I~~~~~~~ 219 (594)
T 1g7s_A 212 LMGLAQQY 219 (594)
T ss_dssp HHHHHHHH
T ss_pred HHhhcccc
Confidence 99887653
No 84
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.72 E-value=1e-17 Score=147.23 Aligned_cols=164 Identities=15% Similarity=0.156 Sum_probs=93.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|.+|||||||+|+|++........ |.+....... .+.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-------~t~~~~~~~~------------------------~~~---- 49 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHI-------TTLGASFLTK------------------------KLN---- 49 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCC-------CCCSCEEEEE------------------------EEE----
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCC-------CccceEEEEE------------------------EEE----
Confidence 45789999999999999999999876432110 1110000000 000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
+. .....+.||||||+.++.. +... ....+|++++|+|+....+... ....+..+...
T Consensus 50 ~~-------------~~~~~l~i~Dt~G~~~~~~-------~~~~-~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~ 107 (170)
T 1z08_A 50 IG-------------GKRVNLAIWDTAGQERFHA-------LGPI-YYRDSNGAILVYDITDEDSFQK-VKNWVKELRKM 107 (170)
T ss_dssp SS-------------SCEEEEEEEECCCC--------------CC-SSTTCSEEEEEEETTCHHHHHH-HHHHHHHHHHH
T ss_pred EC-------------CEEEEEEEEECCCcHhhhh-------hHHH-HhccCCEEEEEEECcCHHHHHH-HHHHHHHHHHh
Confidence 00 1235789999999866421 1100 1134799999999875332111 11111112222
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...+.|+++|+||+|+....... ......+.. . ...+++++||++|.|+.+++++
T Consensus 108 ~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~----------------------~-~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 108 LGNEICLCIVGNKIDLEKERHVS--IQEAESYAE----------------------S-VGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp HGGGSEEEEEEECGGGGGGCCSC--HHHHHHHHH----------------------H-TTCEEEEEBTTTTBSHHHHHHH
T ss_pred cCCCCeEEEEEECcccccccccC--HHHHHHHHH----------------------H-cCCeEEEecCCCCCCHHHHHHH
Confidence 23578999999999997643211 011111110 1 1357999999999999999999
Q ss_pred HHHHHH
Q 014354 308 VEESAQ 313 (426)
Q Consensus 308 l~~~~~ 313 (426)
|.+.+.
T Consensus 163 l~~~~~ 168 (170)
T 1z08_A 163 LCKRMI 168 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988765
No 85
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.72 E-value=4.3e-19 Score=179.39 Aligned_cols=87 Identities=14% Similarity=0.111 Sum_probs=48.8
Q ss_pred hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH-H
Q 014354 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK-A 307 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~-~ 307 (426)
...+|+|+|+||+|+.... +...+..... . .+.++|++||+.+.|+.++++ .
T Consensus 212 ~~~kP~i~v~NK~D~~~~~----~l~~l~~~~~---------------------~--~~~~vv~iSA~~e~~l~~L~~~~ 264 (397)
T 1wxq_A 212 RVNKPMVIAANKADAASDE----QIKRLVREEE---------------------K--RGYIVIPTSAAAELTLRKAAKAG 264 (397)
T ss_dssp HHHSCEEEEEECGGGSCHH----HHHHHHHHHH---------------------H--TTCEEEEECHHHHHHHHSCSSSC
T ss_pred ccCCCEEEEEeCccccchH----HHHHHHHHHh---------------------h--cCCcEEEEeccchhhHHHHHhhh
Confidence 3569999999999988432 2222221000 0 135799999999999999887 8
Q ss_pred HHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHH
Q 014354 308 VEESAQEFMETYKADLDKRRAEKQRLEEERQKENINK 344 (426)
Q Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~ 344 (426)
+.+.+|..+++||.+..+....+ +.+.+|+++|..
T Consensus 265 l~~~~p~~~~~~~~~~l~~~~~~--~~e~ire~~l~~ 299 (397)
T 1wxq_A 265 FIEYIPGASEFKVLRDMSEKQKR--ALMVIKEKVLDR 299 (397)
T ss_dssp CCCSCC-------------------CTTHHHHHHTSS
T ss_pred hhhhcCCCccccccccCCHHHHH--HHHHHHHHHHHH
Confidence 88899999999999877765554 567777666553
No 86
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.72 E-value=1.8e-17 Score=149.03 Aligned_cols=162 Identities=19% Similarity=0.233 Sum_probs=98.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
++..+|+|+|.+|||||||+|+|++..... ..|.+. + ......
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------~~~t~~-------~----------------------~~~~~~ 62 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT--------TVPTVG-------V----------------------NLETLQ 62 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE--------ECSSTT-------C----------------------CEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC--------cCCCCc-------e----------------------EEEEEE
Confidence 467899999999999999999997654321 011110 0 000000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
..+..+.||||||+.++...... . ...+|++++|+|+....+..... ..+...
T Consensus 63 ----------------~~~~~~~~~Dt~G~~~~~~~~~~------~--~~~~d~ii~v~d~~~~~s~~~~~---~~~~~~ 115 (189)
T 2x77_A 63 ----------------YKNISFEVWDLGGQTGVRPYWRC------Y--FSDTDAVIYVVDSTDRDRMGVAK---HELYAL 115 (189)
T ss_dssp ----------------ETTEEEEEEEECCSSSSCCCCSS------S--STTCCEEEEEEETTCCTTHHHHH---HHHHHH
T ss_pred ----------------ECCEEEEEEECCCCHhHHHHHHH------H--hhcCCEEEEEEeCCCHHHHHHHH---HHHHHH
Confidence 12468899999999765211100 0 13479999999997653322111 111222
Q ss_pred Hhh---ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 227 LYK---TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 227 l~~---~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
+.. .++|+++|+||+|+.......++...+ +... ......+++++||++|.|+.+
T Consensus 116 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~---------------------~~~~-~~~~~~~~~~~Sa~~~~gi~~ 173 (189)
T 2x77_A 116 LDEDELRKSLLLIFANKQDLPDAASEAEIAEQL---------------------GVSS-IMNRTWTIVKSSSKTGDGLVE 173 (189)
T ss_dssp HTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHT---------------------TGGG-CCSSCEEEEECCTTTCTTHHH
T ss_pred HhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHh---------------------Chhh-ccCCceEEEEccCCCccCHHH
Confidence 222 478999999999998753222221111 0000 001124799999999999999
Q ss_pred HHHHHHHHHHH
Q 014354 304 YFKAVEESAQE 314 (426)
Q Consensus 304 l~~~l~~~~~~ 314 (426)
++++|.+.+.+
T Consensus 174 l~~~l~~~i~~ 184 (189)
T 2x77_A 174 GMDWLVERLRE 184 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887764
No 87
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.72 E-value=4e-17 Score=144.55 Aligned_cols=165 Identities=15% Similarity=0.180 Sum_probs=95.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|++|||||||+|+|++..+..... |.. ..+.. .....
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-------~~~-------~~~~~--------------------~~~~~- 50 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLF-------HTI-------GVEFL--------------------NKDLE- 50 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC-----------CC-------SEEEE--------------------EEEEE-
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCC-------Cce-------eeeEE--------------------EEEEE-
Confidence 45789999999999999999999876432110 000 00000 00000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
+. .....+.||||||+.++. .+... ....+|++++|+|+....+.... ...+..+...
T Consensus 51 ~~-------------~~~~~~~i~Dt~G~~~~~-------~~~~~-~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~ 108 (177)
T 1wms_A 51 VD-------------GHFVTMQIWDTAGQERFR-------SLRTP-FYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYY 108 (177)
T ss_dssp ET-------------TEEEEEEEEECCCCGGGH-------HHHGG-GGTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHH
T ss_pred EC-------------CEEEEEEEEeCCCchhhh-------hhHHH-HHhcCCEEEEEEECcCHHHHHHH-HHHHHHHHHH
Confidence 00 122578999999987651 11111 11347999999999764322111 1111111111
Q ss_pred hh----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 228 YK----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 228 ~~----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
.. .++|+++|+||+|+.......+. ...+. ......+++++||++|.|+.+
T Consensus 109 ~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~---~~~~~----------------------~~~~~~~~~~~Sa~~~~gi~~ 163 (177)
T 1wms_A 109 ADVKEPESFPFVILGNKIDISERQVSTEE---AQAWC----------------------RDNGDYPYFETSAKDATNVAA 163 (177)
T ss_dssp HTCSCTTTSCEEEEEECTTCSSCSSCHHH---HHHHH----------------------HHTTCCCEEECCTTTCTTHHH
T ss_pred ccccccCCCcEEEEEECCcccccccCHHH---HHHHH----------------------HhcCCceEEEEeCCCCCCHHH
Confidence 11 57899999999999743211111 11111 112346799999999999999
Q ss_pred HHHHHHHHHHH
Q 014354 304 YFKAVEESAQE 314 (426)
Q Consensus 304 l~~~l~~~~~~ 314 (426)
++++|.+.+..
T Consensus 164 l~~~l~~~~~~ 174 (177)
T 1wms_A 164 AFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999887653
No 88
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.72 E-value=1.2e-17 Score=151.10 Aligned_cols=166 Identities=16% Similarity=0.056 Sum_probs=97.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+|+|.+|||||||+|+|++..+.... ..+........+ ..
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~--------------~~t~~~~~~~~~-----------------~~--- 66 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAY--------------VPTVFENFSHVM-----------------KY--- 66 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC--------------CCCSEEEEEEEE-----------------EE---
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCcc--------------CCeeeeeeEEEE-----------------EE---
Confidence 35579999999999999999999987643211 111100000000 00
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
....+.+.||||||+.++...... ....+|++++|+|+....+..... ..+...
T Consensus 67 ---------------~~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~---~~~~~~ 120 (194)
T 3reg_A 67 ---------------KNEEFILHLWDTAGQEEYDRLRPL--------SYADSDVVLLCFAVNNRTSFDNIS---TKWEPE 120 (194)
T ss_dssp ---------------TTEEEEEEEEEECCSGGGTTTGGG--------GCTTCSEEEEEEETTCHHHHHHHH---HTHHHH
T ss_pred ---------------CCEEEEEEEEECCCcHHHHHHhHh--------hccCCcEEEEEEECCCHHHHHHHH---HHHHHH
Confidence 013356799999998775211110 113479999999997542211110 111222
Q ss_pred Hh--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 227 LY--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 227 l~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
+. ..++|+|||+||+|+...............+. ..++...++++||++|.|+.++
T Consensus 121 ~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~gi~~l 178 (194)
T 3reg_A 121 IKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC----------------------QKLGCVAYIEASSVAKIGLNEV 178 (194)
T ss_dssp HHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH----------------------HHHTCSCEEECBTTTTBSHHHH
T ss_pred HHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHH----------------------HhcCCCEEEEeecCCCCCHHHH
Confidence 22 23689999999999975321100011111111 1123334999999999999999
Q ss_pred HHHHHHHHHH
Q 014354 305 FKAVEESAQE 314 (426)
Q Consensus 305 ~~~l~~~~~~ 314 (426)
+++|.+.+..
T Consensus 179 ~~~l~~~i~~ 188 (194)
T 3reg_A 179 FEKSVDCIFS 188 (194)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999887654
No 89
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=154.06 Aligned_cols=176 Identities=16% Similarity=0.205 Sum_probs=91.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|.+|||||||+++|++..+.... .|... ..+... +..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~-------~~t~~-~~~~~~-----------------------~~~---- 77 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESY-------TPTVF-ERYMVN-----------------------LQV---- 77 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC--------------CCCCC-EEEEEE-----------------------EEE----
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCC-------CCccc-eeEEEE-----------------------EEE----
Confidence 4579999999999999999999986543210 01000 000000 000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
......+.||||||+.++. .+...+ ...+|++++|+|+.... .+......++..+
T Consensus 78 --------------~~~~~~l~l~Dt~G~~~~~-------~~~~~~-~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~ 132 (214)
T 2j1l_A 78 --------------KGKPVHLHIWDTAGQDDYD-------RLRPLF-YPDASVLLLCFDVTSPN---SFDNIFNRWYPEV 132 (214)
T ss_dssp --------------TTEEEEEEEEEC-----------------------CEEEEEEEEETTCHH---HHHHHHHTHHHHH
T ss_pred --------------CCEEEEEEEEECCCchhhh-------HHHHHH-hccCCEEEEEEECcCHH---HHHHHHHHHHHHH
Confidence 0123578999999987652 111111 13469999999987532 2211111122222
Q ss_pred hh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 228 YK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 228 ~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
.. .++|+|||+||+|+.............. ...+....+..+...++..+++++||++|.|+.+++
T Consensus 133 ~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~ 200 (214)
T 2j1l_A 133 NHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNG------------LEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200 (214)
T ss_dssp HHHCSSCCEEEEEECGGGGSCHHHHHHHHHTT------------CCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred HHhCCCCCEEEEEEChhhhccchhhhhhcccc------------cCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHH
Confidence 22 3789999999999987653322211000 000000001111112233479999999999999999
Q ss_pred HHHHHHHHHH
Q 014354 306 KAVEESAQEF 315 (426)
Q Consensus 306 ~~l~~~~~~~ 315 (426)
++|.+.+.+.
T Consensus 201 ~~l~~~~~~~ 210 (214)
T 2j1l_A 201 QEAAEVALSS 210 (214)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999877653
No 90
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.71 E-value=2.2e-17 Score=149.35 Aligned_cols=167 Identities=17% Similarity=0.215 Sum_probs=95.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
.....+|+|+|.+|||||||+|+|++..+.... .|.+ +...... .+..
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~-------~~t~-----~~~~~~~------------------~~~~-- 70 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEAC-------KSTV-----GVDFKIK------------------TVEL-- 70 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC---------------CCT-----TEEEEEE------------------EEEE--
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCC-------CCcc-----ceeEEEE------------------EEEE--
Confidence 344578999999999999999999987643210 0111 0000000 0000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
......+.||||||+.++. ......+ ..+|++|+|+|+....+.... ...+..+.
T Consensus 71 ----------------~~~~~~l~l~Dt~G~~~~~------~~~~~~~--~~~d~iilV~D~~~~~s~~~~-~~~~~~i~ 125 (192)
T 2il1_A 71 ----------------RGKKIRLQIWDTAGQERFN------SITSAYY--RSAKGIILVYDITKKETFDDL-PKWMKMID 125 (192)
T ss_dssp ----------------TTEEEEEEEEEECCSGGGH------HHHHHHH--HHCSEEEEEEETTCHHHHHTH-HHHHHHHH
T ss_pred ----------------CCeEEEEEEEeCCCcHHHH------HHHHHHh--cCCCEEEEEEECcCHHHHHHH-HHHHHHHH
Confidence 0123578999999987652 1122222 236999999999764322111 11111222
Q ss_pred HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
.....++|++||+||+|+....... ......+. ..+...+++++||++|.|+.+++
T Consensus 126 ~~~~~~~piilV~NK~Dl~~~~~v~--~~~~~~~~----------------------~~~~~~~~~~~SA~~g~gi~~l~ 181 (192)
T 2il1_A 126 KYASEDAELLLVGNKLDCETDREIT--RQQGEKFA----------------------QQITGMRFCEASAKDNFNVDEIF 181 (192)
T ss_dssp HHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHH----------------------HTSTTCEEEECBTTTTBSHHHHH
T ss_pred HhcCCCCcEEEEEECcccccccccC--HHHHHHHH----------------------HhcCCCeEEEEeCCCCCCHHHHH
Confidence 2223478999999999987543210 01111111 11234679999999999999999
Q ss_pred HHHHHHHH
Q 014354 306 KAVEESAQ 313 (426)
Q Consensus 306 ~~l~~~~~ 313 (426)
++|.+.+.
T Consensus 182 ~~l~~~i~ 189 (192)
T 2il1_A 182 LKLVDDIL 189 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987764
No 91
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.71 E-value=5.8e-17 Score=144.00 Aligned_cols=162 Identities=17% Similarity=0.212 Sum_probs=96.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|.+|||||||+|+|++........ +.+ +..... ..+.
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------~~~-----~~~~~~-------------------~~~~---- 55 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQE-------STI-----GAAFFS-------------------QTLA---- 55 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSC-------CCS-----CCSEEE-------------------EEEE----
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCC-------CCc-----eeEEEE-------------------EEEE----
Confidence 45789999999999999999999876432110 000 000000 0000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
+ ......+.||||||+.++... ....+ ..+|++++|+|+..... +.. ...++..+
T Consensus 56 ~-------------~~~~~~~~i~Dt~G~~~~~~~------~~~~~--~~~d~~i~v~d~~~~~s---~~~-~~~~~~~~ 110 (181)
T 2efe_B 56 V-------------NDATVKFEIWDTAGQERYHSL------APMYY--RGAAAAIIVFDVTNQAS---FER-AKKWVQEL 110 (181)
T ss_dssp E-------------TTEEEEEEEEECCCSGGGGGG------THHHH--TTCSEEEEEEETTCHHH---HHH-HHHHHHHH
T ss_pred E-------------CCEEEEEEEEeCCCChhhhhh------hHHHh--ccCCEEEEEEECCCHHH---HHH-HHHHHHHH
Confidence 0 012357899999998765211 11111 34799999999865332 111 11222222
Q ss_pred h---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 228 ~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
. ..++|+++|+||+|+....... ......+.. . ...+++++||++|.|+.++
T Consensus 111 ~~~~~~~~p~i~v~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~g~gi~~l 165 (181)
T 2efe_B 111 QAQGNPNMVMALAGNKSDLLDARKVT--AEDAQTYAQ---------------------E--NGLFFMETSAKTATNVKEI 165 (181)
T ss_dssp HHHSCTTCEEEEEEECTTCTTTCCSC--HHHHHHHHH---------------------H--TTCEEEECCSSSCTTHHHH
T ss_pred HHhcCCCCcEEEEEECCcccccccCC--HHHHHHHHH---------------------H--cCCEEEEEECCCCCCHHHH
Confidence 2 2378999999999997643210 011111110 0 1357999999999999999
Q ss_pred HHHHHHHHHH
Q 014354 305 FKAVEESAQE 314 (426)
Q Consensus 305 ~~~l~~~~~~ 314 (426)
+.+|.+.+..
T Consensus 166 ~~~l~~~~~~ 175 (181)
T 2efe_B 166 FYEIARRLPR 175 (181)
T ss_dssp HHHHHHTCC-
T ss_pred HHHHHHHHHh
Confidence 9999886654
No 92
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.71 E-value=5.4e-17 Score=142.08 Aligned_cols=161 Identities=17% Similarity=0.203 Sum_probs=95.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|++|||||||+|+|++........ | +...+.... .+..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-------~-------t~~~~~~~~----------------~~~~---- 49 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYK-------K-------TIGVDFLER----------------QIQV---- 49 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSS-------C-------CCSSSEEEE----------------EEEE----
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCC-------C-------ceEEEEEEE----------------EEEE----
Confidence 45789999999999999999999875432100 0 100000000 0000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
......+.||||||+.++... . . ..+ ..+|++++|+|+....+... ...++..+
T Consensus 50 --------------~~~~~~~~l~Dt~G~~~~~~~--~-~---~~~--~~~d~~i~v~d~~~~~s~~~----~~~~~~~i 103 (168)
T 1z2a_A 50 --------------NDEDVRLMLWDTAGQEEFDAI--T-K---AYY--RGAQACVLVFSTTDRESFEA----ISSWREKV 103 (168)
T ss_dssp --------------TTEEEEEEEECCTTGGGTTCC--C-H---HHH--TTCCEEEEEEETTCHHHHHT----HHHHHHHH
T ss_pred --------------CCEEEEEEEEcCCCcHhHHHH--H-H---HHh--cCCCEEEEEEECcCHHHHHH----HHHHHHHH
Confidence 012358899999998765211 1 1 111 35799999999976322111 11112222
Q ss_pred h--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 228 Y--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 228 ~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
. ..+.|+++|+||+|+....... ......+.. . + ..+++++||++|.|+.+++
T Consensus 104 ~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~~~~i~~l~ 158 (168)
T 1z2a_A 104 VAEVGDIPTALVQNKIDLLDDSCIK--NEEAEGLAK---------------------R-L-KLRFYRTSVKEDLNVSEVF 158 (168)
T ss_dssp HHHHCSCCEEEEEECGGGGGGCSSC--HHHHHHHHH---------------------H-H-TCEEEECBTTTTBSSHHHH
T ss_pred HHhCCCCCEEEEEECcccCcccccC--HHHHHHHHH---------------------H-c-CCeEEEEecCCCCCHHHHH
Confidence 2 1478999999999987643210 011111111 1 1 2479999999999999999
Q ss_pred HHHHHHHH
Q 014354 306 KAVEESAQ 313 (426)
Q Consensus 306 ~~l~~~~~ 313 (426)
++|.+.+.
T Consensus 159 ~~l~~~~~ 166 (168)
T 1z2a_A 159 KYLAEKHL 166 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99987654
No 93
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.71 E-value=2.7e-17 Score=147.89 Aligned_cols=161 Identities=16% Similarity=0.212 Sum_probs=92.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|.+|||||||+|+|++...... ...++....... +..
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~-----------------~~~---- 64 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDE--------------YDPTIEDSYRKQ-----------------VVI---- 64 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSC--------------CCTTCCEEEEEE-----------------EEE----
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccc--------------cCCccceEEEEE-----------------EEE----
Confidence 457999999999999999999998754321 111110000000 000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
....+.+.||||||+.++. .+...+ ...+|++++|+|+......... ..++..+
T Consensus 65 --------------~~~~~~~~l~Dt~G~~~~~-------~~~~~~-~~~~d~~i~v~d~~~~~s~~~~----~~~~~~i 118 (190)
T 3con_A 65 --------------DGETCLLDILDTAGQEEYS-------AMRDQY-MRTGEGFLCVFAINNSKSFADI----NLYREQI 118 (190)
T ss_dssp --------------TTEEEEEEEEECCC-------------------CTTCSEEEEEEETTCHHHHHHH----HHHHHHH
T ss_pred --------------CCEEEEEEEEECCChHHHH-------HHHHHh-hCcCCEEEEEEECcCHHHHHHH----HHHHHHH
Confidence 0123578999999987642 111111 1347999999998754321111 1111112
Q ss_pred h----hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 228 Y----KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 228 ~----~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
. ..++|+++|+||+|+......... ...+.. . + ..+++++||++|.|+.+
T Consensus 119 ~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~---~~~~~~---------------------~-~-~~~~~~~Sa~~~~gi~~ 172 (190)
T 3con_A 119 KRVKDSDDVPMVLVGNKCDLPTRTVDTKQ---AHELAK---------------------S-Y-GIPFIETSAKTRQGVED 172 (190)
T ss_dssp HHHHTCSCCCEEEEEECTTCSCCCSCHHH---HHHHHH---------------------H-H-TCCEEECCTTTCTTHHH
T ss_pred HHHhCCCCCeEEEEEECCcCCcccCCHHH---HHHHHH---------------------H-c-CCeEEEEeCCCCCCHHH
Confidence 2 247899999999999763211111 111111 1 1 24799999999999999
Q ss_pred HHHHHHHHHHHH
Q 014354 304 YFKAVEESAQEF 315 (426)
Q Consensus 304 l~~~l~~~~~~~ 315 (426)
++++|.+.+...
T Consensus 173 l~~~l~~~~~~~ 184 (190)
T 3con_A 173 AFYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999877653
No 94
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=6.2e-17 Score=147.99 Aligned_cols=166 Identities=16% Similarity=0.214 Sum_probs=96.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+.++|+|+|.+|||||||+|+|++..+... ..+ +...+.. .....
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-------------~~~-~~~~~~~--------------------~~~~~ 63 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPS-------------FIT-TIGIDFK--------------------IKTVD 63 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCS-------------SSC-CCSCCEE--------------------EEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcc-------------cCC-cccceEE--------------------EEEEE
Confidence 4568999999999999999999998764321 011 0000000 00000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
+. .....+.||||||+..+... . ...+ ..+|++++|+|+........ ....+..+..
T Consensus 64 -~~-------------~~~~~~~l~Dt~G~~~~~~~--~----~~~~--~~~d~ii~v~d~~~~~s~~~-~~~~~~~i~~ 120 (213)
T 3cph_A 64 -IN-------------GKKVKLQLWDTAGQERFRTI--T----TAYY--RGAMGIILVYDVTDERTFTN-IKQWFKTVNE 120 (213)
T ss_dssp -ET-------------TEEEEEEEECCTTGGGGTCC--C----HHHH--TTCSEEEEEEETTCHHHHHT-HHHHHHHHHH
T ss_pred -EC-------------CEEEEEEEEeCCCcHHHHHH--H----HHHh--ccCCEEEEEEECCCHHHHHH-HHHHHHHHHH
Confidence 00 12257899999998765211 1 1111 35799999999875332111 1111111111
Q ss_pred HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
....++|++||+||+|+............+ .. .+ ..+++++||++|.|+.+++.
T Consensus 121 ~~~~~~piilv~nK~Dl~~~~~~~~~~~~~---~~----------------------~~-~~~~~~~Sa~~~~gi~~l~~ 174 (213)
T 3cph_A 121 HANDEAQLLLVGNKSDMETRVVTADQGEAL---AK----------------------EL-GIPFIESSAKNDDNVNEIFF 174 (213)
T ss_dssp HTTTCSEEEEEEECTTCSSCCSCHHHHHHH---HH----------------------HH-TCCEEECBTTTTBSSHHHHH
T ss_pred hcCCCCCEEEEEECCCCcccccCHHHHHHH---HH----------------------Hc-CCEEEEEeCCCCCCHHHHHH
Confidence 223478999999999995332111111111 10 11 24799999999999999999
Q ss_pred HHHHHHHHH
Q 014354 307 AVEESAQEF 315 (426)
Q Consensus 307 ~l~~~~~~~ 315 (426)
+|.+.+.+.
T Consensus 175 ~l~~~~~~~ 183 (213)
T 3cph_A 175 TLAKLIQEK 183 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887664
No 95
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.71 E-value=4.5e-17 Score=144.37 Aligned_cols=164 Identities=16% Similarity=0.169 Sum_probs=96.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+.++|+|+|.+|||||||+|+|++..+... ..+.. ..+... ..+..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-------------~~~~~-~~~~~~-----------------~~~~~--- 53 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGS-------------YITTI-GVDFKI-----------------RTVEI--- 53 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---C-------------CTTTB-SEEEEE-----------------EEEEE---
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCc-------------cCCCc-eeEEEE-----------------EEEEE---
Confidence 457899999999999999999998764321 11100 000000 00000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
......+.||||||+..+...... . ...+|++++|+|+........ ...++..+
T Consensus 54 --------------~~~~~~~~i~Dt~G~~~~~~~~~~------~--~~~~d~~i~v~d~~~~~s~~~----~~~~~~~~ 107 (181)
T 3tw8_B 54 --------------NGEKVKLQIWDTAGQERFRTITST------Y--YRGTHGVIVVYDVTSAESFVN----VKRWLHEI 107 (181)
T ss_dssp --------------TTEEEEEEEEEETTGGGCSSCCGG------G--GTTCSEEEEEEETTCHHHHHH----HHHHHHHH
T ss_pred --------------CCEEEEEEEEcCCCchhhhhhHHH------H--hccCCEEEEEEECCCHHHHHH----HHHHHHHH
Confidence 012257899999998765211110 0 134799999999976322111 11122222
Q ss_pred h--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 228 Y--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 228 ~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
. ..+.|+|+|+||+|+........ .....+. . ....+++++||++|.|+.+++
T Consensus 108 ~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~----------------------~-~~~~~~~~~Sa~~~~gi~~l~ 162 (181)
T 3tw8_B 108 NQNCDDVCRILVGNKNDDPERKVVET--EDAYKFA----------------------G-QMGIQLFETSAKENVNVEEMF 162 (181)
T ss_dssp HHHCTTSEEEEEEECTTCGGGCCSCH--HHHHHHH----------------------H-HHTCCEEECBTTTTBSHHHHH
T ss_pred HHhCCCCCEEEEEECCCCchhcccCH--HHHHHHH----------------------H-HcCCeEEEEECCCCCCHHHHH
Confidence 2 23689999999999876432110 0111010 0 113579999999999999999
Q ss_pred HHHHHHHHHHH
Q 014354 306 KAVEESAQEFM 316 (426)
Q Consensus 306 ~~l~~~~~~~~ 316 (426)
++|.+.+....
T Consensus 163 ~~l~~~~~~~~ 173 (181)
T 3tw8_B 163 NCITELVLRAK 173 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99998876643
No 96
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.71 E-value=3.2e-17 Score=150.31 Aligned_cols=167 Identities=14% Similarity=0.092 Sum_probs=98.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+|+|.+|||||||+++|++..+.... ..+....... .+..
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~--------------~~t~~~~~~~-----------------~~~~--- 52 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY--------------IPTVFDNFSA-----------------NVAV--- 52 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSC--------------CCSSCCCEEE-----------------EEEC---
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccC--------------CCccceeEEE-----------------EEEE---
Confidence 35679999999999999999999987643211 1111000000 0000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
......+.||||||+.++..... . ....+|++|+|+|+....+ +......++..
T Consensus 53 ---------------~~~~~~~~i~Dt~G~~~~~~~~~-------~-~~~~~d~~ilv~d~~~~~s---~~~~~~~~~~~ 106 (212)
T 2j0v_A 53 ---------------DGQIVNLGLWDTAGQEDYSRLRP-------L-SYRGADIFVLAFSLISKAS---YENVLKKWMPE 106 (212)
T ss_dssp ---------------SSCEEEEEEECCCCCCCCCC--C-------G-GGTTCSEEEEEEETTCHHH---HHHHHHTHHHH
T ss_pred ---------------CCEEEEEEEEECCCcHHHHHHHH-------h-hccCCCEEEEEEECCCHHH---HHHHHHHHHHH
Confidence 01235789999999977532111 0 1134799999999865322 21111112222
Q ss_pred Hhh--ccCCeEEEEecCCCCChHhHHH------HHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccC
Q 014354 227 LYK--TRLPLVLAFNKTDVAQHEFALE------WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG 298 (426)
Q Consensus 227 l~~--~~~P~IlVlNKiDl~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g 298 (426)
+.. .++|+|||+||+|+........ .......+ ...++..+++++||++|
T Consensus 107 ~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~----------------------~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 107 LRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEEL----------------------RKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp HHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHH----------------------HHHHTCSEEEECCTTTC
T ss_pred HHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHH----------------------HHHcCCceEEEccCCCC
Confidence 332 2799999999999876432100 00111111 11123357999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 014354 299 AGIEAYFKAVEESAQEF 315 (426)
Q Consensus 299 ~gv~~l~~~l~~~~~~~ 315 (426)
.|+.+++++|.+.+...
T Consensus 165 ~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp TTHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhhh
Confidence 99999999999887653
No 97
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=8.7e-17 Score=145.07 Aligned_cols=164 Identities=15% Similarity=0.206 Sum_probs=98.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
....+|+|+|.+|||||||+|+|++..+.......+ +.+ .... .+..
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~-----------~~~~------------------~~~~--- 67 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTV-GID-----------FKVK------------------TVYR--- 67 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEE-TTT-----------EEEE------------------EEEE---
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCe-eeE-----------EEEE------------------EEEE---
Confidence 356799999999999999999999876543221111 000 0000 0000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
......+.||||||+..+. ......+ ..+|++++|+|+..... +. ....++..
T Consensus 68 ---------------~~~~~~~~i~Dt~G~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s---~~-~~~~~~~~ 120 (191)
T 3dz8_A 68 ---------------HEKRVKLQIWDTAGQERYR------TITTAYY--RGAMGFILMYDITNEES---FN-AVQDWATQ 120 (191)
T ss_dssp ---------------TTTTEEEEEECHHHHHHCH------HHHHHHH--TTCCEEEEEEETTCHHH---HH-THHHHHHH
T ss_pred ---------------CCEEEEEEEEeCCChHHHH------HHHHHHH--ccCCEEEEEEECcCHHH---HH-HHHHHHHH
Confidence 0234678999999986641 1111122 35799999999975321 11 11122222
Q ss_pred Hhh---ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 227 LYK---TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 227 l~~---~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
+.. .++|+|||+||+|+....... ......+. ..+ ..+++++||++|.|+.+
T Consensus 121 i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~~-~~~~~~~Sa~~~~gi~~ 175 (191)
T 3dz8_A 121 IKTYSWDNAQVILVGNKCDMEEERVVP--TEKGQLLA----------------------EQL-GFDFFEASAKENISVRQ 175 (191)
T ss_dssp HHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HHH-TCEEEECBTTTTBSHHH
T ss_pred HHHhcCCCCCEEEEEECCCCccccccC--HHHHHHHH----------------------HHc-CCeEEEEECCCCCCHHH
Confidence 332 578999999999986543211 00111111 111 35799999999999999
Q ss_pred HHHHHHHHHHHH
Q 014354 304 YFKAVEESAQEF 315 (426)
Q Consensus 304 l~~~l~~~~~~~ 315 (426)
++++|.+.+.+.
T Consensus 176 l~~~l~~~i~~~ 187 (191)
T 3dz8_A 176 AFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999877553
No 98
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.70 E-value=2.8e-17 Score=148.05 Aligned_cols=160 Identities=16% Similarity=0.200 Sum_probs=96.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..+..+|+|+|.+|||||||++++++..+..... |.... +...+ ..
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~-------~t~~~--~~~~~-----------------------~~-- 62 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEES-------PEGGR--FKKEI-----------------------VV-- 62 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCC-------TTCEE--EEEEE-----------------------EE--
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC-------CCcce--EEEEE-----------------------EE--
Confidence 4456899999999999999999999876542110 11000 00000 00
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
. .....+.||||||+..+. .+ ..+|++++|+|+.... .|.. ...++.
T Consensus 63 ---~-------------~~~~~l~i~Dt~G~~~~~-----------~~--~~~~~~i~v~d~~~~~---s~~~-~~~~~~ 109 (184)
T 3ihw_A 63 ---D-------------GQSYLLLIRDEGGPPELQ-----------FA--AWVDAVVFVFSLEDEI---SFQT-VYNYFL 109 (184)
T ss_dssp ---T-------------TEEEEEEEEECSSSCCHH-----------HH--HHCSEEEEEEETTCHH---HHHH-HHHHHH
T ss_pred ---C-------------CEEEEEEEEECCCChhhh-----------ee--cCCCEEEEEEECcCHH---HHHH-HHHHHH
Confidence 0 123577899999997751 22 2269999999997532 2211 112222
Q ss_pred HHhh----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354 226 ILYK----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (426)
Q Consensus 226 ~l~~----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv 301 (426)
.+.. .++|++||+||+|+.......-.......+. ..++..+++++||++|.|+
T Consensus 110 ~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~----------------------~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 110 RLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLS----------------------TDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp HHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH----------------------HHTTTCEEEEEBTTTTBTH
T ss_pred HHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHH----------------------HHcCCCeEEEecCCCCCCH
Confidence 2332 4789999999999952110000001111111 1123467999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014354 302 EAYFKAVEESAQE 314 (426)
Q Consensus 302 ~~l~~~l~~~~~~ 314 (426)
.+++.+|.+.+..
T Consensus 168 ~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 168 ERVFQDVAQKVVA 180 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 99
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.70 E-value=5.9e-17 Score=143.38 Aligned_cols=165 Identities=18% Similarity=0.245 Sum_probs=97.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+|+|.+|||||||+|+|++..+... .+.+...+... ..+.
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~-----------------~~~~--- 58 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMAD--------------CPHTIGVEFGT-----------------RIIE--- 58 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSS--------------CTTSCCCCEEE-----------------EEEE---
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceEEEE-----------------EEEE---
Confidence 3457999999999999999999998764321 11111000000 0000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
+ ......+.||||||+.++. ......+ ..+|++++|+|+........ ....+..+..
T Consensus 59 -~-------------~~~~~~~~l~Dt~G~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~ 115 (179)
T 1z0f_A 59 -V-------------SGQKIKLQIWDTAGQERFR------AVTRSYY--RGAAGALMVYDITRRSTYNH-LSSWLTDARN 115 (179)
T ss_dssp -E-------------TTEEEEEEEEECTTGGGTC------HHHHHHH--HTCSEEEEEEETTCHHHHHT-HHHHHHHHHH
T ss_pred -E-------------CCeEEEEEEEECCCChHhh------hhHHHHh--ccCCEEEEEEeCcCHHHHHH-HHHHHHHHHH
Confidence 0 0123578999999987642 1112222 34699999999976432211 1111111222
Q ss_pred HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
....++|+++|+||+|+....... ......+.. . ...+++++||++|.|+.++++
T Consensus 116 ~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 116 LTNPNTVIILIGNKADLEAQRDVT--YEEAKQFAE---------------------E--NGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp HSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H--TTCEEEECCTTTCTTHHHHHH
T ss_pred hcCCCCcEEEEEECcccccccccC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHHH
Confidence 233578999999999996543210 011111110 1 135799999999999999999
Q ss_pred HHHHHHH
Q 014354 307 AVEESAQ 313 (426)
Q Consensus 307 ~l~~~~~ 313 (426)
+|.+.+.
T Consensus 171 ~l~~~i~ 177 (179)
T 1z0f_A 171 EAAKKIY 177 (179)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9987653
No 100
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.70 E-value=3.2e-17 Score=148.57 Aligned_cols=161 Identities=17% Similarity=0.179 Sum_probs=93.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..+..+|+|+|.+|||||||+++|++..+.. ..|.+. +.. ..+.
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~--------~~~t~~---~~~-----------------------~~~~-- 69 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT--------TIPTIG---FNV-----------------------ETVE-- 69 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE--------EEEETT---EEE-----------------------EEEE--
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc--------cCCcCc---eeE-----------------------EEEE--
Confidence 4567899999999999999999998765321 011110 000 0000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
..+..+.||||||+.++.. . ....+ ..+|++++|+|+....+ +......+..
T Consensus 70 -----------------~~~~~~~i~Dt~G~~~~~~---~---~~~~~--~~~d~iilv~D~~~~~s---~~~~~~~l~~ 121 (192)
T 2b6h_A 70 -----------------YKNICFTVWDVGGQDKIRP---L---WRHYF--QNTQGLIFVVDSNDRER---VQESADELQK 121 (192)
T ss_dssp -----------------ETTEEEEEEECC-----CT---T---HHHHH--HTCCEEEEEEETTCGGG---HHHHHHHHHH
T ss_pred -----------------ECCEEEEEEECCCCHhHHH---H---HHHHh--ccCCEEEEEEECCCHHH---HHHHHHHHHH
Confidence 1346889999999976521 1 11122 35799999999976432 2111111112
Q ss_pred HHh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354 226 ILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 226 ~l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~ 302 (426)
.+. ..++|++||+||+|+.......++...+ +... ......+++++||++|.|++
T Consensus 122 ~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~---------------------~~~~-~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 122 MLQEDELRDAVLLVFANKQDMPNAMPVSELTDKL---------------------GLQH-LRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp HHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT---------------------TGGG-CSSCCEEEEECBTTTTBTHH
T ss_pred HhcccccCCCeEEEEEECCCCCCCCCHHHHHHHh---------------------Cccc-ccCCceEEEECcCCCcCCHH
Confidence 222 2478999999999997653222222111 1000 00112468999999999999
Q ss_pred HHHHHHHHHH
Q 014354 303 AYFKAVEESA 312 (426)
Q Consensus 303 ~l~~~l~~~~ 312 (426)
+++++|.+.+
T Consensus 180 ~l~~~l~~~i 189 (192)
T 2b6h_A 180 DGLDWLSHEL 189 (192)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.70 E-value=6.2e-17 Score=148.56 Aligned_cols=185 Identities=19% Similarity=0.219 Sum_probs=96.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+.++|+|+|.+|||||||+++|++..+.... +.+. .+.. .+..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~--------------~~~~-~~~~-------------------~~~~--- 48 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ--------------TSIT-DSSA-------------------IYKV--- 48 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBC--------------CCCS-CEEE-------------------EEEC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccc--------------CCcc-eeeE-------------------EEEe---
Confidence 4578999999999999999999987643211 1010 0000 0000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
. ......+.||||||+.++. ..+...+ ...++++|+|+|+........... ..+...+
T Consensus 49 -~------------~~~~~~~~i~Dt~G~~~~~------~~~~~~~-~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~ 106 (214)
T 2fh5_B 49 -N------------NNRGNSLTLIDLPGHESLR------FQLLDRF-KSSARAVVFVVDSAAFQREVKDVA--EFLYQVL 106 (214)
T ss_dssp -S------------STTCCEEEEEECCCCHHHH------HHHHHHH-GGGEEEEEEEEETTTHHHHHHHHH--HHHHHHH
T ss_pred -c------------CCCccEEEEEECCCChhHH------HHHHHHH-HhhCCEEEEEEECCCcCHHHHHHH--HHHHHHH
Confidence 0 0114689999999997641 1122222 234699999999975211111111 1111111
Q ss_pred -----hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhcccc-ch-----hhh----HHHHhhhhH--hhhhcCCce
Q 014354 228 -----YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDH-SY-----TST----LTNSLSLAL--DEFYKNLKS 290 (426)
Q Consensus 228 -----~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~-~~-----~~~----~~~~~~~~l--~~~~~~~~v 290 (426)
...++|++||+||+|+........+...+......+.... .. ... +....+..+ ..+...+++
T Consensus 107 ~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (214)
T 2fh5_B 107 IDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEF 186 (214)
T ss_dssp HHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEE
T ss_pred hhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEE
Confidence 1346899999999999876444334444433222110000 00 000 000000000 001115679
Q ss_pred EEeecccC------CCHHHHHHHHHHH
Q 014354 291 VGVSSVSG------AGIEAYFKAVEES 311 (426)
Q Consensus 291 v~vSA~~g------~gv~~l~~~l~~~ 311 (426)
+++||++| .||++++++|.+.
T Consensus 187 ~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 187 LECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp EECBCC-------CCBCHHHHHHHHHH
T ss_pred EEeeccCCCccccccChHHHHHHHHHh
Confidence 99999999 9999999999764
No 102
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.70 E-value=1.7e-17 Score=170.76 Aligned_cols=161 Identities=18% Similarity=0.222 Sum_probs=98.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
.+.+|+|+|+||||||||+|+|++..... ++..++++ ++.... .+.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------v~~~~gtT----~d~~~~--------------~i~---- 268 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAI------------VTDLPGTT----RDVVES--------------QLV---- 268 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSC------------CSCCTTCC----HHHHHH--------------EEE----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCccc------------ccCCCCee----EEEEEE--------------EEE----
Confidence 46789999999999999999999986542 45555555 333210 000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHH-HHHHHH-hcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI-ITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~-l~~~~~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
..+..+.||||||+.++. ...... +..... ...+|++|+|+|+........ ..++.
T Consensus 269 ---------------~~g~~v~liDT~G~~~~~--~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-----~~i~~ 326 (462)
T 3geh_A 269 ---------------VGGIPVQVLDTAGIRETS--DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-----QEIYE 326 (462)
T ss_dssp ---------------ETTEEEEECC----------------------CCCCSCSEEEEEEETTTCSCHHH-----HHHHH
T ss_pred ---------------ECCEEEEEEECCccccch--hHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-----HHHHH
Confidence 134678999999997641 111111 111111 134899999999988665433 12222
Q ss_pred HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
.+. ..|+|+|+||+|+....... .+ ..+....+++++||++|.|+++|+
T Consensus 327 ~l~--~~piivV~NK~Dl~~~~~~~----~~-------------------------~~~~~~~~~i~iSAktg~Gi~eL~ 375 (462)
T 3geh_A 327 QVK--HRPLILVMNKIDLVEKQLIT----SL-------------------------EYPENITQIVHTAAAQKQGIDSLE 375 (462)
T ss_dssp HHT--TSCEEEEEECTTSSCGGGST----TC-------------------------CCCTTCCCEEEEBTTTTBSHHHHH
T ss_pred hcc--CCcEEEEEECCCCCcchhhH----HH-------------------------HHhccCCcEEEEECCCCCCHHHHH
Confidence 232 37999999999998765321 00 112234679999999999999999
Q ss_pred HHHHHHHHHH
Q 014354 306 KAVEESAQEF 315 (426)
Q Consensus 306 ~~l~~~~~~~ 315 (426)
++|.+.+...
T Consensus 376 ~~i~~~~~~~ 385 (462)
T 3geh_A 376 TAILEIVQTG 385 (462)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHhcc
Confidence 9999887654
No 103
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.70 E-value=7.2e-17 Score=143.35 Aligned_cols=160 Identities=14% Similarity=0.176 Sum_probs=94.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|.+|||||||++++++..+.. . .|.+.. .+...+ ..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~-------~~t~~~-~~~~~~-----------------------~~---- 49 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-L-------EKTESE-QYKKEM-----------------------LV---- 49 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-C-------SSCSSS-EEEEEE-----------------------EE----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-c-------CCCcce-eEEEEE-----------------------EE----
Confidence 55789999999999999999999876432 0 011100 000000 00
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
. .....+.||||||+.++ ..+ ..+|++++|+|+....+... ....+..+..+
T Consensus 50 -~-------------~~~~~l~i~Dt~G~~~~-----------~~~--~~~d~~ilv~D~~~~~s~~~-~~~~~~~i~~~ 101 (178)
T 2iwr_A 50 -D-------------GQTHLVLIREEAGAPDA-----------KFS--GWADAVIFVFSLEDENSFQA-VSRLHGQLSSL 101 (178)
T ss_dssp -T-------------TEEEEEEEEECSSSCCH-----------HHH--HHCSEEEEEEETTCHHHHHH-HHHHHHHHHHH
T ss_pred -C-------------CEEEEEEEEECCCCchh-----------HHH--HhCCEEEEEEECcCHHHHHH-HHHHHHHHHHH
Confidence 0 12357899999998662 111 22699999999875332111 11111112222
Q ss_pred hh---ccCCeEEEEecCCCCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354 228 YK---TRLPLVLAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 228 ~~---~~~P~IlVlNKiDl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~ 302 (426)
.. .++|+|||+||+|+... ... .......+. ..+...+++++||++|.|++
T Consensus 102 ~~~~~~~~piilv~nK~Dl~~~~~~~v--~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 102 RGEGRGGLALALVGTQDRISASSPRVV--GDARARALX----------------------ADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp HCSSSCCCEEEEEEECTTCBTTBCCCS--CHHHHHHHH----------------------HHHSSEEEEEEBTTTTBTHH
T ss_pred HhcCCCCCCEEEEEECccccccccCcC--CHHHHHHHH----------------------HhhcCCeEEEEeccccCCHH
Confidence 22 47899999999999421 110 001111111 11224579999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014354 303 AYFKAVEESAQEF 315 (426)
Q Consensus 303 ~l~~~l~~~~~~~ 315 (426)
+++++|.+.+...
T Consensus 158 ~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 158 RVFQEVAQKVVTL 170 (178)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877654
No 104
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.70 E-value=2.6e-17 Score=149.74 Aligned_cols=166 Identities=15% Similarity=0.127 Sum_probs=95.6
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (426)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~ 144 (426)
......+|+|+|.+|||||||+++|++..... ...+.++ .+... ..+.
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-------------~~~~~~~-~~~~~-----------------~~~~- 66 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDS-------------AHEPENP-EDTYE-----------------RRIM- 66 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCG-------------GGTTTSC-TTEEE-----------------EEEE-
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCc-------------cCCCCcc-cceEE-----------------EEEE-
Confidence 34456899999999999999999998754321 1111111 00000 0000
Q ss_pred cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
+. .....+.||||||+..+. ..+...+- ..++++++|+|+....+ |.. ...++
T Consensus 67 ---~~-------------~~~~~l~i~Dt~g~~~~~------~~~~~~~~-~~~d~~ilv~d~~~~~s---~~~-~~~~~ 119 (195)
T 3cbq_A 67 ---VD-------------KEEVTLVVYDIWEQGDAG------GWLRDHCL-QTGDAFLIVFSVTDRRS---FSK-VPETL 119 (195)
T ss_dssp ---ET-------------TEEEEEEEECCCCCSGGG------HHHHHHHH-HHCSEEEEEEETTCHHH---HHT-HHHHH
T ss_pred ---EC-------------CEEEEEEEEecCCCccch------hhhHHHhh-ccCCEEEEEEECCCHHH---HHH-HHHHH
Confidence 00 123578899999997642 11222111 23689999999865321 111 11112
Q ss_pred HHHhh----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC
Q 014354 225 SILYK----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300 (426)
Q Consensus 225 ~~l~~----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g 300 (426)
..+.. .++|+|||+||+|+....... ......+. ..+ ..+++++||++|.|
T Consensus 120 ~~i~~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~a----------------------~~~-~~~~~e~Sa~~~~~ 174 (195)
T 3cbq_A 120 LRLRAGRPHHDLPVILVGNKSDLARSREVS--LEEGRHLA----------------------GTL-SCKHIETSAALHHN 174 (195)
T ss_dssp HHHHHHSTTSCCCEEEEEECTTCTTTCCSC--HHHHHHHH----------------------HHT-TCEEEEEBTTTTBS
T ss_pred HHHHHhcCCCCCCEEEEeechhccccCCcC--HHHHHHHH----------------------HHh-CCEEEEEcCCCCCC
Confidence 22221 479999999999997643210 01111111 111 25799999999999
Q ss_pred HHHHHHHHHHHHHH
Q 014354 301 IEAYFKAVEESAQE 314 (426)
Q Consensus 301 v~~l~~~l~~~~~~ 314 (426)
+.+++.+|.+.+..
T Consensus 175 v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 175 TRELFEGAVRQIRL 188 (195)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 105
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.70 E-value=1e-16 Score=147.47 Aligned_cols=174 Identities=20% Similarity=0.205 Sum_probs=98.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+|+|.+|||||||+|+|++..+....... ++.+.......+.. ..++++...
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~------------------~~~~~~~~~--- 80 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITT-VGIDFREKRVVYNA------------------QGPNGSSGK--- 80 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEE-EEEEEEEEEEEEEC-------------------------CC---
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCc-eeEEEEEEEEEECC------------------ccccccccC---
Confidence 34578999999999999999999987654321111 11110000000000 000011000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
.....+.||||||+.++. ......+ ..+|++|+|+|+..... +. ....++..
T Consensus 81 ----------------~~~~~l~l~Dt~G~~~~~------~~~~~~~--~~~d~iilV~D~~~~~s---~~-~~~~~l~~ 132 (217)
T 2f7s_A 81 ----------------AFKVHLQLWDTAGQERFR------SLTTAFF--RDAMGFLLMFDLTSQQS---FL-NVRNWMSQ 132 (217)
T ss_dssp ----------------EEEEEEEEEEEESHHHHH------HHHHHHH--TTCCEEEEEEETTCHHH---HH-HHHHHHHT
T ss_pred ----------------ceeEEEEEEECCCcHhHH------hHHHHHh--cCCCEEEEEEECcCHHH---HH-HHHHHHHH
Confidence 113678999999986541 1111222 45799999999965322 11 11122222
Q ss_pred Hhh----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354 227 LYK----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 227 l~~----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~ 302 (426)
+.. .++|+|||+||+|+....... ......+.. . ...+++++||++|.|+.
T Consensus 133 i~~~~~~~~~piilV~NK~Dl~~~~~v~--~~~~~~~~~----------------------~-~~~~~~~~Sa~~g~gi~ 187 (217)
T 2f7s_A 133 LQANAYCENPDIVLIGNKADLPDQREVN--ERQARELAD----------------------K-YGIPYFETSAATGQNVE 187 (217)
T ss_dssp CCCCCTTTCCEEEEEEECTTCGGGCCSC--HHHHHHHHH----------------------H-TTCCEEEEBTTTTBTHH
T ss_pred HHHhcCcCCCCEEEEEECCccccccccC--HHHHHHHHH----------------------H-CCCcEEEEECCCCCCHH
Confidence 222 578999999999997543210 011111110 1 13579999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014354 303 AYFKAVEESAQEF 315 (426)
Q Consensus 303 ~l~~~l~~~~~~~ 315 (426)
+++++|.+.+.+.
T Consensus 188 ~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 188 KAVETLLDLIMKR 200 (217)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877654
No 106
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=5.4e-17 Score=142.47 Aligned_cols=158 Identities=15% Similarity=0.165 Sum_probs=92.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..+|+|+|.+|||||||+|+|++....... ......+. +.. +..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~----------~~t~~~~~----~~~-----------------~~~----- 46 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESY----------IPTVEDTY----RQV-----------------ISC----- 46 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSC----------CCCSCEEE----EEE-----------------EEE-----
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC----------CCCccccE----EEE-----------------EEE-----
Confidence 468999999999999999999986543211 00000000 000 000
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~ 228 (426)
......+.||||||+.++. ......+ ..+|++++|+|+..... +.. ...++..+.
T Consensus 47 -------------~~~~~~~~~~Dt~G~~~~~------~~~~~~~--~~~~~~i~v~d~~~~~~---~~~-~~~~~~~i~ 101 (172)
T 2erx_A 47 -------------DKSICTLQITDTTGSHQFP------AMQRLSI--SKGHAFILVYSITSRQS---LEE-LKPIYEQIC 101 (172)
T ss_dssp -------------TTEEEEEEEEECCSCSSCH------HHHHHHH--HHCSEEEEEEETTCHHH---HHT-THHHHHHHH
T ss_pred -------------CCEEEEEEEEECCCchhhH------HHHHHhc--ccCCEEEEEEECcCHHH---HHH-HHHHHHHHH
Confidence 0123578999999987752 1111122 23689999999975321 111 111122222
Q ss_pred h-----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 229 K-----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 229 ~-----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
. .++|+++|+||+|+......... ....+. ..+ ..+++++||++|.|+.+
T Consensus 102 ~~~~~~~~~pii~v~nK~Dl~~~~~v~~~--~~~~~~----------------------~~~-~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 102 EIKGDVESIPIMLVGNKCDESPSREVQSS--EAEALA----------------------RTW-KCAFMETSAKLNHNVKE 156 (172)
T ss_dssp HHHC---CCCEEEEEECGGGGGGCCSCHH--HHHHHH----------------------HHH-TCEEEECBTTTTBSHHH
T ss_pred HHhCCCCCCCEEEEEEccccccccccCHH--HHHHHH----------------------HHh-CCeEEEecCCCCcCHHH
Confidence 1 37899999999998764322100 011000 011 25799999999999999
Q ss_pred HHHHHHHHH
Q 014354 304 YFKAVEESA 312 (426)
Q Consensus 304 l~~~l~~~~ 312 (426)
++++|.+.+
T Consensus 157 l~~~l~~~~ 165 (172)
T 2erx_A 157 LFQELLNLE 165 (172)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHH
Confidence 999998654
No 107
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.70 E-value=6.9e-18 Score=176.04 Aligned_cols=165 Identities=19% Similarity=0.275 Sum_probs=106.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
++++|+|+|++|+|||||+++|++..+... ..+..+ .++. ...+..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~-------------~~~giT-~~i~-----------------~~~v~~--- 48 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM-------------EAGGIT-QHIG-----------------AFLVSL--- 48 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHS-------------SSCCBC-CCTT-----------------SCCBCS---
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc-------------cCCcee-EEEe-----------------EEEEEe---
Confidence 567899999999999999999998875421 111111 1100 000110
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
..+..+.||||||+..+......+. ..+|++|+|+|+..+..+++ ...+..+
T Consensus 49 ---------------~~g~~i~~iDTPGhe~f~~~~~~~~--------~~aD~vILVVDa~dg~~~qt-----~e~l~~~ 100 (537)
T 3izy_P 49 ---------------PSGEKITFLDTPGHAAFSAMRARGT--------QVTDIVILVVAADDGVMKQT-----VESIQHA 100 (537)
T ss_dssp ---------------SCSSCCBCEECSSSCCTTTSBBSSS--------BSBSSCEEECBSSSCCCHHH-----HHHHHHH
T ss_pred ---------------CCCCEEEEEECCChHHHHHHHHHHH--------ccCCEEEEEEECCCCccHHH-----HHHHHHH
Confidence 1335789999999987632222111 34799999999998877655 3445556
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...++|+|+|+||+|+...... .....+. ......+.|....+++++||++|.|+.+|+++
T Consensus 101 ~~~~vPiIVViNKiDl~~~~~~-~v~~~l~------------------~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~ 161 (537)
T 3izy_P 101 KDAHVPIVLAINKCDKAEADPE-KVKKELL------------------AYDVVCEDYGGDVQAVHVSALTGENMMALAEA 161 (537)
T ss_dssp HTTTCCEEECCBSGGGTTTSCC-SSSSHHH------------------HTTSCCCCSSSSEEECCCCSSSSCSSHHHHHH
T ss_pred HHcCCcEEEEEecccccccchH-HHHHHHH------------------hhhhhHHhcCCCceEEEEECCCCCCchhHHHH
Confidence 6788999999999998753210 0000010 00111123334568999999999999999999
Q ss_pred HHHHHH
Q 014354 308 VEESAQ 313 (426)
Q Consensus 308 l~~~~~ 313 (426)
|...++
T Consensus 162 I~~l~~ 167 (537)
T 3izy_P 162 TIALAE 167 (537)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 987654
No 108
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.70 E-value=1.1e-17 Score=154.11 Aligned_cols=169 Identities=14% Similarity=0.105 Sum_probs=98.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
...+|+|+|.+|||||||+|+|++..+.... ..+...... .....
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~------------------~~~~~--- 54 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNY--------------NATVGAVNH------------------PVTFL--- 54 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEE--------------ETTTTEEEE------------------EEEEE---
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC--------------CCccceeeE------------------EEEEE---
Confidence 4579999999999999999999976543210 000000000 00000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
.. ......+.||||||+..+.... .. . ...+|++|+|+|+....+..... ..+..+...
T Consensus 55 -~~-----------~~~~~~~~l~Dt~G~~~~~~~~--~~----~--~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~ 113 (218)
T 4djt_A 55 -DD-----------QGNVIKFNVWDTAGQEKKAVLK--DV----Y--YIGASGAILFFDVTSRITCQNLA-RWVKEFQAV 113 (218)
T ss_dssp -BT-----------TSCEEEEEEEEECSGGGTSCCC--HH----H--HTTCSEEEEEEETTCHHHHHTHH-HHHHHHHHH
T ss_pred -eC-----------CCcEEEEEEEecCCchhhchHH--HH----H--hhcCCEEEEEEeCCCHHHHHHHH-HHHHHHHHh
Confidence 00 0111568999999987752111 11 1 13479999999997654322211 111222222
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...++|+|||+||+|+........ .....+ + .....+++++||++|.|+.+++.+
T Consensus 114 ~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~------------------~-----~~~~~~~~~~Sa~~g~gv~~l~~~ 168 (218)
T 4djt_A 114 VGNEAPIVVCANKIDIKNRQKISK--KLVMEV------------------L-----KGKNYEYFEISAKTAHNFGLPFLH 168 (218)
T ss_dssp HCSSSCEEEEEECTTCC----CCH--HHHHHH------------------T-----TTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred cCCCCCEEEEEECCCCccccccCH--HHHHHH------------------H-----HHcCCcEEEEecCCCCCHHHHHHH
Confidence 334689999999999986532111 001100 0 113467999999999999999999
Q ss_pred HHHHHHHHHh
Q 014354 308 VEESAQEFME 317 (426)
Q Consensus 308 l~~~~~~~~~ 317 (426)
|.+.+.....
T Consensus 169 l~~~~~~~~~ 178 (218)
T 4djt_A 169 LARIFTGRPD 178 (218)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHhcccc
Confidence 9998876543
No 109
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.70 E-value=9.5e-17 Score=146.44 Aligned_cols=166 Identities=14% Similarity=0.178 Sum_probs=97.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|++|||||||+++|++..+.... .+ +..++... ..+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-------------~~-t~~~~~~~-----------------~~~~---- 51 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDY-------------IS-TIGVDFKI-----------------KTVE---- 51 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTC-------------CC-SSCCCEEE-----------------EEEE----
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCC-------------CC-cccceeEE-----------------EEEE----
Confidence 4578999999999999999999987643211 01 10000000 0000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
+ ......+.||||||+.++..... .. ...+|++|+|+|+....+... ....+..+...
T Consensus 52 ~-------------~~~~~~~~l~Dt~G~~~~~~~~~------~~--~~~~d~vilv~d~~~~~s~~~-~~~~~~~i~~~ 109 (206)
T 2bcg_Y 52 L-------------DGKTVKLQIWDTAGQERFRTITS------SY--YRGSHGIIIVYDVTDQESFNG-VKMWLQEIDRY 109 (206)
T ss_dssp E-------------TTEEEEEEEECCTTTTTTTCCCG------GG--GTTCSEEEEEEETTCHHHHHH-HHHHHHHHHHH
T ss_pred E-------------CCEEEEEEEEeCCChHHHHHHHH------Hh--ccCCCEEEEEEECcCHHHHHH-HHHHHHHHHHh
Confidence 0 01235789999999877521110 01 134799999999976432111 11111111112
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...+.|++||+||+|+....... ......+. .. ...+++++||++|.|+.+++.+
T Consensus 110 ~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~g~gi~~l~~~ 164 (206)
T 2bcg_Y 110 ATSTVLKLLVGNKCDLKDKRVVE--YDVAKEFA----------------------DA-NKMPFLETSALDSTNVEDAFLT 164 (206)
T ss_dssp SCTTCEEEEEEECTTCTTTCCSC--HHHHHHHH----------------------HH-TTCCEEECCTTTCTTHHHHHHH
T ss_pred cCCCCCEEEEEECCCCccccccC--HHHHHHHH----------------------HH-cCCeEEEEeCCCCCCHHHHHHH
Confidence 23468999999999998643210 01111110 01 1357999999999999999999
Q ss_pred HHHHHHHH
Q 014354 308 VEESAQEF 315 (426)
Q Consensus 308 l~~~~~~~ 315 (426)
|.+.+.+.
T Consensus 165 l~~~i~~~ 172 (206)
T 2bcg_Y 165 MARQIKES 172 (206)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887653
No 110
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.70 E-value=2.5e-16 Score=140.99 Aligned_cols=170 Identities=20% Similarity=0.204 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
++|+|+|.+|||||||+|+|++..+.. ...|..+ .. ....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-------------~~~~~~t-~~--------------------~~~~------ 41 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRR-------------GKRPGVT-RK--------------------IIEI------ 41 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSS-------------SSSTTCT-TS--------------------CEEE------
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCcc-------------CCCCCcc-ce--------------------eEEE------
Confidence 479999999999999999999876432 2222221 00 0000
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhch-----HHHHHHHHH--hcCCcEEEEEEeCCCCCCchhhhhh---
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSAS-----GAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSN--- 219 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~-----~~~l~~~~~--~~~~d~vl~VVDa~~~~~~~~~~~~--- 219 (426)
.-..+.+|||||+.....+... .......+. ...++++++|+|+.........|..
T Consensus 42 --------------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~ 107 (190)
T 2cxx_A 42 --------------EWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGE 107 (190)
T ss_dssp --------------EETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTC
T ss_pred --------------ecCCEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCc
Confidence 0027899999997543222111 122222333 2346789999997532211111211
Q ss_pred ---HHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecc
Q 014354 220 ---MLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV 296 (426)
Q Consensus 220 ---~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~ 296 (426)
.......+...++|+++|+||+|+.... ....+.+ . +.++.....+ ..+++++||+
T Consensus 108 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~---~--------------~~~~~~~~~~--~~~~~~~Sa~ 166 (190)
T 2cxx_A 108 IPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEVINFL---A--------------EKFEVPLSEI--DKVFIPISAK 166 (190)
T ss_dssp CCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHHHHHH---H--------------HHHTCCGGGH--HHHEEECCTT
T ss_pred cHHHHHHHHHHHhcCCceEEEeehHhccCcH--HHHHHHH---H--------------HHhhhhhhcc--CCcEEEEecC
Confidence 0122333445689999999999998754 1111111 1 1111100000 1358999999
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 014354 297 SGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 297 ~g~gv~~l~~~l~~~~~~ 314 (426)
+|.|+.+++++|.+.+.+
T Consensus 167 ~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 167 FGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcch
Confidence 999999999999887765
No 111
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=144.43 Aligned_cols=163 Identities=18% Similarity=0.251 Sum_probs=97.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+|+|.+|||||||+|+|++..+..... +.+. ..+.+ +. +..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~-------~t~~-~~~~~----~~------------------~~~--- 69 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSR-------TTIG-VEFST----RT------------------VML--- 69 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCC-------CCSS-EEEEE----EE------------------EEE---
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-------Cccc-eeEEE----EE------------------EEE---
Confidence 345799999999999999999999876542110 0000 00000 00 000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
......+.||||||+.++. .. ....+ ..+|++|+|+|+..... +. ....++..
T Consensus 70 ---------------~~~~~~~~i~Dt~G~~~~~---~~---~~~~~--~~~d~vi~v~D~~~~~s---~~-~~~~~l~~ 122 (193)
T 2oil_A 70 ---------------GTAAVKAQIWDTAGLERYR---AI---TSAYY--RGAVGALLVFDLTKHQT---YA-VVERWLKE 122 (193)
T ss_dssp ---------------TTEEEEEEEEEESCCCTTC---TT---HHHHH--TTCCEEEEEEETTCHHH---HH-THHHHHHH
T ss_pred ---------------CCEEEEEEEEeCCCchhhh---hh---hHHHh--ccCCEEEEEEECCCHHH---HH-HHHHHHHH
Confidence 0133678999999997752 11 11112 35799999999975332 11 11112222
Q ss_pred Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
+. ..++|++||+||+|+....... ......+. .. ...+++++||++|.|+.+
T Consensus 123 i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 123 LYDHAEATIVVMLVGNKSDLSQAREVP--TEEARMFA----------------------EN-NGLLFLETSALDSTNVEL 177 (193)
T ss_dssp HHTTSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHH----------------------HH-TTCEEEEECTTTCTTHHH
T ss_pred HHHhcCCCCeEEEEEECCCcccccccC--HHHHHHHH----------------------HH-cCCEEEEEeCCCCCCHHH
Confidence 22 3478999999999997643210 01111111 01 235799999999999999
Q ss_pred HHHHHHHHHHH
Q 014354 304 YFKAVEESAQE 314 (426)
Q Consensus 304 l~~~l~~~~~~ 314 (426)
++.+|.+.+.+
T Consensus 178 l~~~l~~~i~~ 188 (193)
T 2oil_A 178 AFETVLKEIFA 188 (193)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887754
No 112
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=6.4e-17 Score=146.14 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=95.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+...|+|+|.+|||||||+|+|++..+..... |.. ..+. +.. +..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-------~t~---~~~~----~~~-----------------~~~---- 51 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYI-------PTI---EDTY----RQV-----------------ISC---- 51 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTS-------CCC---CEEE----EEE-----------------EEE----
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCccc-------Ccc---ccce----eEE-----------------EEE----
Confidence 55799999999999999999999865432110 000 0000 000 000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
......+.||||||+.++. ......+ ..+|++++|+|+......... ...+..+..+
T Consensus 52 --------------~~~~~~~~l~Dt~G~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~ 108 (199)
T 2gf0_A 52 --------------DKSVCTLQITDTTGSHQFP------AMQRLSI--SKGHAFILVFSVTSKQSLEEL-GPIYKLIVQI 108 (199)
T ss_dssp --------------TTEEEEEEEEECCGGGSCH------HHHHHHH--HHCSEEEEEEETTCHHHHHTT-HHHHHHHHHH
T ss_pred --------------CCEEEEEEEEeCCChHHhH------HHHHHhh--ccCCEEEEEEECcCHHHHHHH-HHHHHHHHHH
Confidence 0123578999999987652 1111122 236899999998753221110 0011111112
Q ss_pred h--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 228 Y--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 228 ~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
. ..++|+|+|+||+|+............+ .. . + ..+++++||++|.|+.+++
T Consensus 109 ~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~---~~---------------------~-~-~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 109 KGSVEDIPVMLVGNKCDETQREVDTREAQAV---AQ---------------------E-W-KCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp HSCGGGSCEEEEEECTTCSSCSSCHHHHHHH---HH---------------------H-H-TCEEEECBTTTTBSHHHHH
T ss_pred hcCCCCCCEEEEEECccCCccccCHHHHHHH---HH---------------------H-h-CCeEEEEecCCCCCHHHHH
Confidence 2 2478999999999997632111111111 00 1 1 2479999999999999999
Q ss_pred HHHHHHHHHH
Q 014354 306 KAVEESAQEF 315 (426)
Q Consensus 306 ~~l~~~~~~~ 315 (426)
++|.+.+...
T Consensus 163 ~~l~~~~~~~ 172 (199)
T 2gf0_A 163 QELLTLETRR 172 (199)
T ss_dssp HHHHHHCSSS
T ss_pred HHHHHHHhhh
Confidence 9998876543
No 113
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=2.4e-17 Score=149.07 Aligned_cols=165 Identities=16% Similarity=0.193 Sum_probs=97.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+|+|.+|||||||+|+|++..+... .....+.+ .... .+...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------~~~~~~~~-~~~~------------------~~~~~-- 68 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHN-----------ISPTIGAS-FMTK------------------TVPCG-- 68 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTT-----------CCCCSSEE-EEEE------------------EEECS--
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCC-----------cCCCccee-EEEE------------------EEEeC--
Confidence 3457999999999999999999998764321 11111000 0000 00000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
.....+.||||||+.++... ....+ ..+|++++|+|+........ ...++..
T Consensus 69 ----------------~~~~~~~i~Dt~G~~~~~~~------~~~~~--~~~d~iilV~d~~~~~s~~~----~~~~~~~ 120 (192)
T 2fg5_A 69 ----------------NELHKFLIWDTAGQERFHSL------APMYY--RGSAAAVIVYDITKQDSFYT----LKKWVKE 120 (192)
T ss_dssp ----------------SSEEEEEEEEECCSGGGGGG------THHHH--TTCSEEEEEEETTCTHHHHH----HHHHHHH
T ss_pred ----------------CEEEEEEEEcCCCchhhHhh------hHHhh--ccCCEEEEEEeCCCHHHHHH----HHHHHHH
Confidence 13357899999998765211 11112 34799999999875432111 1122222
Q ss_pred Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
+. ..++|++||+||+|+....... .+....+.. . ...+++++||++|.|+.+
T Consensus 121 i~~~~~~~~piiiv~NK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~ 175 (192)
T 2fg5_A 121 LKEHGPENIVMAIAGNKCDLSDIREVP--LKDAKEYAE---------------------S--IGAIVVETSAKNAINIEE 175 (192)
T ss_dssp HHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------T--TTCEEEECBTTTTBSHHH
T ss_pred HHHhCCCCCcEEEEEECcccccccccC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCcCHHH
Confidence 22 2378999999999997532210 111111110 1 135799999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014354 304 YFKAVEESAQEFM 316 (426)
Q Consensus 304 l~~~l~~~~~~~~ 316 (426)
++++|.+.+++.+
T Consensus 176 l~~~l~~~i~~~~ 188 (192)
T 2fg5_A 176 LFQGISRQIPPLD 188 (192)
T ss_dssp HHHHHHHTCC---
T ss_pred HHHHHHHHHHhhC
Confidence 9999988766543
No 114
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.70 E-value=2.3e-17 Score=152.32 Aligned_cols=180 Identities=15% Similarity=0.123 Sum_probs=107.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcC----CCCCCCccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFN----LGPNGGILT 143 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~----l~~ng~i~~ 143 (426)
+.++|+|+|++|||||||+++|++..... .++.++..++... .+... +...+ ..+++|+|+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~----------~d~~~----~~~~~~~~~~~~~~~~~~ 93 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSK----------ADYER----VRRFGIKAEAISTGKECH 93 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCH----------HHHHH----HHTTTCEEEECCCTTCSS
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCc----------hhHHH----HHhCCCcEEEecCCceee
Confidence 45789999999999999999999886444 5667776666421 11111 11111 123455543
Q ss_pred ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (426)
Q Consensus 144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~ 223 (426)
. ....+.+ ... ...+++++||||||+....... ....+.+++|+|+..+.... +
T Consensus 94 ~---~~~~~~~---~~~-~~~~~d~iiidt~G~~~~~~~~-----------~~~~~~~i~vvd~~~~~~~~--~------ 147 (221)
T 2wsm_A 94 L---DAHMIYH---RLK-KFSDCDLLLIENVGNLICPVDF-----------DLGENYRVVMVSVTEGDDVV--E------ 147 (221)
T ss_dssp C---CHHHHHT---TGG-GGTTCSEEEEEEEEBSSGGGGC-----------CCSCSEEEEEEEGGGCTTHH--H------
T ss_pred c---ccHHHHH---HHH-hcCCCCEEEEeCCCCCCCCchh-----------ccccCcEEEEEeCCCcchhh--h------
Confidence 2 1111111 111 2456899999999962210000 01247899999997754211 1
Q ss_pred HHHHhhccCCeEEEEecCCCCChH--hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354 224 CSILYKTRLPLVLAFNKTDVAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (426)
Q Consensus 224 ~~~l~~~~~P~IlVlNKiDl~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv 301 (426)
......++|.++|+||+|+.... ........+. .+....+++++||++|.|+
T Consensus 148 -~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~-------------------------~~~~~~~i~~~Sa~~g~gi 201 (221)
T 2wsm_A 148 -KHPEIFRVADLIVINKVALAEAVGADVEKMKADAK-------------------------LINPRAKIIEMDLKTGKGF 201 (221)
T ss_dssp -HCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHHH-------------------------HHCTTSEEEECBTTTTBTH
T ss_pred -hhhhhhhcCCEEEEecccCCcchhhHHHHHHHHHH-------------------------HhCCCCeEEEeecCCCCCH
Confidence 11123468999999999986432 1112222111 1223468999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014354 302 EAYFKAVEESAQE 314 (426)
Q Consensus 302 ~~l~~~l~~~~~~ 314 (426)
.+++++|.+.+..
T Consensus 202 ~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 202 EEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877644
No 115
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.70 E-value=5.6e-17 Score=149.73 Aligned_cols=180 Identities=14% Similarity=0.082 Sum_probs=98.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..+..+|+|+|.+|||||||+++|++..+..... | +........ +..
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~-------~-------t~~~~~~~~-----------------~~~-- 70 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYV-------P-------TVFENYTAC-----------------LET-- 70 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCC-------C-------CSEEEEEEE-----------------EEC--
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcC-------C-------eeeeeEEEE-----------------EEE--
Confidence 3456899999999999999999999876442111 1 110000000 000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
......+.||||||+.++..... .. ...+|++|+|+|+....+ +......++.
T Consensus 71 ----------------~~~~~~l~i~Dt~G~~~~~~~~~------~~--~~~~d~~i~v~d~~~~~s---~~~~~~~~~~ 123 (214)
T 3q3j_B 71 ----------------EEQRVELSLWDTSGSPYYDNVRP------LC--YSDSDAVLLCFDISRPET---VDSALKKWRT 123 (214)
T ss_dssp ------------------CEEEEEEEEECCSGGGTTTGG------GG--CTTCSEEEEEEETTCTHH---HHHHHTHHHH
T ss_pred ----------------CCEEEEEEEEECCCCHhHHHHHH------HH--cCCCeEEEEEEECcCHHH---HHHHHHHHHH
Confidence 02336789999999977521110 01 134799999999976332 2211112222
Q ss_pred HHhh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC-HH
Q 014354 226 ILYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-IE 302 (426)
Q Consensus 226 ~l~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g-v~ 302 (426)
.+.. .++|+|||+||+|+......... +. .. . ...+....+..+...++..+++++||++|.| |.
T Consensus 124 ~i~~~~~~~piilv~nK~Dl~~~~~~~~~---~~---~~-~-----~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~ 191 (214)
T 3q3j_B 124 EILDYCPSTRVLLIGCKTDLRTDLSTLME---LS---HQ-K-----QAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIH 191 (214)
T ss_dssp HHHHHCTTSEEEEEEECGGGGGCHHHHHH---HH---HT-T-----CCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHH
T ss_pred HHHHhCCCCCEEEEEEChhhccchhhhhh---hc---cc-c-----cCccCHHHHHHHHHHcCCCEEEEeccCCCcccHH
Confidence 2332 37899999999999764211000 00 00 0 0000000011111122333799999999998 99
Q ss_pred HHHHHHHHHHHHHHh
Q 014354 303 AYFKAVEESAQEFME 317 (426)
Q Consensus 303 ~l~~~l~~~~~~~~~ 317 (426)
+++.+|...+.....
T Consensus 192 ~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 192 SIFRTASMLCLNKPS 206 (214)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhccCc
Confidence 999999988765443
No 116
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.70 E-value=7.2e-17 Score=146.76 Aligned_cols=163 Identities=15% Similarity=0.173 Sum_probs=97.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
...+|+|+|.+|||||||+++|++..+..... |.+ +...... .+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------~t~-----~~~~~~~------------------~~~~---- 52 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFV-------STV-----GIDFKVK------------------TIYR---- 52 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCC-------CCC-----SEEEEEE------------------EEEE----
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC-------Ccc-----ceeEEEE------------------EEEE----
Confidence 45789999999999999999999876432110 000 0000000 0000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
......+.||||||+.++. .+...+ ...+|++|+|+|+..... +. ....++..+
T Consensus 53 --------------~~~~~~~~l~Dt~G~~~~~-------~~~~~~-~~~~d~ii~v~d~~~~~s---~~-~~~~~~~~i 106 (203)
T 1zbd_A 53 --------------NDKRIKLQIWDTAGLERYR-------TITTAY-YRGAMGFILMYDITNEES---FN-AVQDWSTQI 106 (203)
T ss_dssp --------------TTEEEEEEEEEECCSGGGH-------HHHHTT-GGGCSEEEEEEETTCHHH---HH-HHHHHHHHH
T ss_pred --------------CCeEEEEEEEECCCchhhc-------chHHHh-hcCCCEEEEEEECcCHHH---HH-HHHHHHHHH
Confidence 0123588999999997641 111111 134799999999875322 11 111122222
Q ss_pred h---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 228 ~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
. ..++|++||+||+|+....... ......+.. .+ ..+++++||++|.|+.++
T Consensus 107 ~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~----------------------~~-~~~~~~~Sa~~~~gi~~l 161 (203)
T 1zbd_A 107 KTYSWDNAQVLLVGNKCDMEDERVVS--SERGRQLAD----------------------HL-GFEFFEASAKDNINVKQT 161 (203)
T ss_dssp HHHSCSSCEEEEEEECTTCTTSCCSC--HHHHHHHHH----------------------HH-TCEEEECBTTTTBSSHHH
T ss_pred HHhcCCCCCEEEEEECcccCcccccC--HHHHHHHHH----------------------HC-CCeEEEEECCCCCCHHHH
Confidence 2 2478999999999997643210 011111110 11 247999999999999999
Q ss_pred HHHHHHHHHHH
Q 014354 305 FKAVEESAQEF 315 (426)
Q Consensus 305 ~~~l~~~~~~~ 315 (426)
+++|.+.+.+.
T Consensus 162 ~~~l~~~i~~~ 172 (203)
T 1zbd_A 162 FERLVDVICEK 172 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998877654
No 117
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.70 E-value=4.5e-17 Score=146.55 Aligned_cols=168 Identities=18% Similarity=0.223 Sum_probs=93.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..+..+|+|+|.+|||||||+|+|++..+..... |.+ .++... ..+..
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------~t~-------~~~~~~-----------------~~~~~- 64 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTE-------ATI-------GVDFRE-----------------RAVDI- 64 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCC-------CCC-------SCCEEE-----------------EEEEE-
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCC-------CCc-------ceEEEE-----------------EEEEE-
Confidence 3456899999999999999999999876442110 000 000000 00000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
......+.||||||+.++. ... ....+ ..+|++|+|+|+....+......-...+..
T Consensus 65 ----------------~~~~~~~~l~Dt~G~~~~~--~~~---~~~~~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~ 121 (189)
T 1z06_A 65 ----------------DGERIKIQLWDTAGQERFR--KSM---VQHYY--RNVHAVVFVYDMTNMASFHSLPAWIEECKQ 121 (189)
T ss_dssp ----------------TTEEEEEEEEECCCSHHHH--TTT---HHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred ----------------CCEEEEEEEEECCCchhhh--hhh---hHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 0123578999999986641 011 11112 357999999999753221111100011112
Q ss_pred HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccC---CCHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG---AGIE 302 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g---~gv~ 302 (426)
.+...++|++||+||+|+....... ......+. .. ...+++++||++| .|+.
T Consensus 122 ~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~~~~~i~ 176 (189)
T 1z06_A 122 HLLANDIPRILVGNKCDLRSAIQVP--TDLAQKFA----------------------DT-HSMPLFETSAKNPNDNDHVE 176 (189)
T ss_dssp HCCCSCCCEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HH-TTCCEEECCSSSGGGGSCHH
T ss_pred hcCCCCCCEEEEEECccccccceeC--HHHHHHHH----------------------HH-cCCEEEEEeCCcCCcccCHH
Confidence 2224579999999999996543211 01111111 01 1357999999999 9999
Q ss_pred HHHHHHHHHHH
Q 014354 303 AYFKAVEESAQ 313 (426)
Q Consensus 303 ~l~~~l~~~~~ 313 (426)
+++.+|.+.++
T Consensus 177 ~l~~~l~~~i~ 187 (189)
T 1z06_A 177 AIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHHHh
Confidence 99999987664
No 118
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.70 E-value=2.5e-16 Score=142.93 Aligned_cols=178 Identities=17% Similarity=0.209 Sum_probs=96.9
Q ss_pred CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc
Q 014354 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT 143 (426)
Q Consensus 64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~ 143 (426)
....+..+|+|+|.+|||||||++++.+..... +.. ...++. ....
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~----------~~~-~~~~~~-----------------------~~~~ 60 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN----------ETL-FLESTN-----------------------KIYK 60 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGG----------GGG-GCCCCC-----------------------SCEE
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCc----------cee-eecccc-----------------------ceee
Confidence 334566899999999999999999998854221 000 000000 0000
Q ss_pred ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (426)
Q Consensus 144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~ 223 (426)
. . +. ......+.||||||+..+....-.. ...+ ..++++|+|+|+...... . .......
T Consensus 61 ~-~-~~------------~~~~~~l~i~Dt~G~~~~~~~~~~~---~~~~--~~~~~~i~v~d~~~~~~~-~-~~~~~~~ 119 (196)
T 3llu_A 61 D-D-IS------------NSSFVNFQIWDFPGQMDFFDPTFDY---EMIF--RGTGALIYVIDAQDDYME-A-LTRLHIT 119 (196)
T ss_dssp E-E-EC------------CTTSCCEEEEECCSSCCTTCTTCCH---HHHH--HTCSEEEEEEETTSCCHH-H-HHHHHHH
T ss_pred e-e-cc------------CCCeeEEEEEECCCCHHHHhhhhhc---cccc--ccCCEEEEEEECCCchHH-H-HHHHHHH
Confidence 0 0 00 0234789999999998752111000 1122 247999999999875211 1 1111122
Q ss_pred HHHH--hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354 224 CSIL--YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (426)
Q Consensus 224 ~~~l--~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv 301 (426)
+..+ ...++|++||+||+|+............+.... .+.++..... ....+++++||++ .||
T Consensus 120 l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~-------------~~~~~~~~~~-~~~~~~~e~Sa~~-~~v 184 (196)
T 3llu_A 120 VSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRA-------------NDDLADAGLE-KLHLSFYLTSIYD-HSI 184 (196)
T ss_dssp HHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHH-------------HHHHHHTTCT-TSCEEEEEECTTS-THH
T ss_pred HHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHH-------------HHHHHHhhhh-cCCcceEEEEech-hhH
Confidence 2222 234789999999999988653322222221100 0111110000 1235799999999 999
Q ss_pred HHHHHHHHHH
Q 014354 302 EAYFKAVEES 311 (426)
Q Consensus 302 ~~l~~~l~~~ 311 (426)
.++|..|.+.
T Consensus 185 ~~~f~~l~~~ 194 (196)
T 3llu_A 185 FEAFSKVVQK 194 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 119
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.69 E-value=9.5e-17 Score=146.50 Aligned_cols=165 Identities=17% Similarity=0.200 Sum_probs=96.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+|+|.+|||||||+++|++..+..... |.+. ..+.. ..+.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~-------~t~~-~~~~~-----------------------~~~~--- 72 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQG-------STIG-VDFTM-----------------------KTLE--- 72 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC------------------CEEE-----------------------EEEE---
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCC-------CCcc-eEEEE-----------------------EEEE---
Confidence 345789999999999999999999876432110 0000 00000 0000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
+ ......+.||||||+.++. ......+ ..+|++|+|+|+....+ +. ....++..
T Consensus 73 -~-------------~~~~~~l~i~Dt~G~~~~~------~~~~~~~--~~~d~iilv~D~~~~~s---~~-~~~~~~~~ 126 (201)
T 2hup_A 73 -I-------------QGKRVKLQIWDTAGQERFR------TITQSYY--RSANGAILAYDITKRSS---FL-SVPHWIED 126 (201)
T ss_dssp -E-------------TTEEEEEEEECCTTCGGGH------HHHHHHH--TTCSEEEEEEETTBHHH---HH-THHHHHHH
T ss_pred -E-------------CCEEEEEEEEECCCcHhHH------HHHHHHH--hhCCEEEEEEECCCHHH---HH-HHHHHHHH
Confidence 0 0122588999999997652 1111222 35799999999865322 11 11122222
Q ss_pred Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
+. ..++|+|||+||+|+....... .+....+. ..++..+++++||++|.|+.+
T Consensus 127 i~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~----------------------~~~~~~~~~~~SA~~g~gi~~ 182 (201)
T 2hup_A 127 VRKYAGSNIVQLLIGNKSDLSELREVS--LAEAQSLA----------------------EHYDILCAIETSAKDSSNVEE 182 (201)
T ss_dssp HHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HHTTCSEEEECBTTTTBSHHH
T ss_pred HHHhcCCCCCEEEEEECCccccccccC--HHHHHHHH----------------------HHcCCCEEEEEeCCCCCCHHH
Confidence 22 2568999999999997532210 11111111 112223799999999999999
Q ss_pred HHHHHHHHHHHH
Q 014354 304 YFKAVEESAQEF 315 (426)
Q Consensus 304 l~~~l~~~~~~~ 315 (426)
++.+|.+.+.+.
T Consensus 183 l~~~l~~~i~~~ 194 (201)
T 2hup_A 183 AFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
No 120
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.1e-16 Score=144.89 Aligned_cols=165 Identities=17% Similarity=0.185 Sum_probs=96.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+|+|.+|||||||+++|++..+.... .| +....... .+...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-------~~-------t~~~~~~~-----------------~~~~~-- 72 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY-------DP-------TLESTYRH-----------------QATID-- 72 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC-------CT-------TCCEEEEE-----------------EEEET--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCccc-------CC-------CCCceEEE-----------------EEEEC--
Confidence 45689999999999999999999987643211 01 11000000 00000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH-HHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACS 225 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~-~~~ 225 (426)
.....+.||||||+.+. ......+ ..+|++++|+|+....+.... ...+. +..
T Consensus 73 ----------------~~~~~~~l~Dt~G~~~~-------~~~~~~~--~~~d~iilv~D~~~~~s~~~~-~~~~~~i~~ 126 (196)
T 2atv_A 73 ----------------DEVVSMEILDTAGQEDT-------IQREGHM--RWGEGFVLVYDITDRGSFEEV-LPLKNILDE 126 (196)
T ss_dssp ----------------TEEEEEEEEECCCCCCC-------HHHHHHH--HHCSEEEEEEETTCHHHHHTH-HHHHHHHHH
T ss_pred ----------------CEEEEEEEEECCCCCcc-------cchhhhh--ccCCEEEEEEECcCHHHHHHH-HHHHHHHHH
Confidence 12357899999998761 1111222 236899999998753211111 01111 111
Q ss_pred HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC-CHHHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA-GIEAY 304 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~-gv~~l 304 (426)
.....++|+|||+||+|+....... ......+.. . + ..+++++||++|. |+.++
T Consensus 127 ~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~g~~gi~~l 181 (196)
T 2atv_A 127 IKKPKNVTLILVGNKADLDHSRQVS--TEEGEKLAT---------------------E-L-ACAFYECSACTGEGNITEI 181 (196)
T ss_dssp HHTTSCCCEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H-H-TSEEEECCTTTCTTCHHHH
T ss_pred hhCCCCCcEEEEEECcccccccccC--HHHHHHHHH---------------------H-h-CCeEEEECCCcCCcCHHHH
Confidence 1123588999999999987642210 011111100 1 1 3579999999999 99999
Q ss_pred HHHHHHHHHHH
Q 014354 305 FKAVEESAQEF 315 (426)
Q Consensus 305 ~~~l~~~~~~~ 315 (426)
+++|.+.+.+.
T Consensus 182 ~~~l~~~i~~~ 192 (196)
T 2atv_A 182 FYELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999877653
No 121
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.69 E-value=1e-16 Score=140.55 Aligned_cols=163 Identities=16% Similarity=0.171 Sum_probs=94.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|++|||||||+|+|++....... ....+.+ ..... +..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------~~~~~~~-~~~~~------------------~~~---- 50 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNI-----------NPTIGAS-FMTKT------------------VQY---- 50 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----------CCCCSEE-EEEEE------------------EEE----
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCC-----------CCceeEE-EEEEE------------------EEE----
Confidence 3478999999999999999999987643210 0000000 00000 000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
......+.||||||+.++.. . ....+ ..+|++++|+|+........ ....+..+...
T Consensus 51 --------------~~~~~~~~~~Dt~G~~~~~~---~---~~~~~--~~~~~~i~v~d~~~~~s~~~-~~~~~~~l~~~ 107 (170)
T 1z0j_A 51 --------------QNELHKFLIWDTAGLERFRA---L---APMYY--RGSAAAIIVYDITKEETFST-LKNWVRELRQH 107 (170)
T ss_dssp --------------TTEEEEEEEEEECCSGGGGG---G---THHHH--TTCSEEEEEEETTCHHHHHH-HHHHHHHHHHH
T ss_pred --------------CCeEEEEEEEcCCCchhhhc---c---cHhhC--cCCCEEEEEEECcCHHHHHH-HHHHHHHHHHh
Confidence 01235789999999976521 1 11111 34699999999975432111 11111112212
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
....+|+++|+||+|+....... .+....+. .. ...+++++||++|.|+.+++++
T Consensus 108 ~~~~~~iilv~nK~Dl~~~~~v~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 108 GPPSIVVAIAGNKCDLTDVREVM--ERDAKDYA----------------------DS-IHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp SCTTSEEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HH-TTCEEEECBTTTTBSHHHHHHH
T ss_pred CCCCCcEEEEEECCccccccccC--HHHHHHHH----------------------HH-cCCEEEEEeCCCCcCHHHHHHH
Confidence 23468899999999997643211 01111111 01 1357999999999999999999
Q ss_pred HHHHH
Q 014354 308 VEESA 312 (426)
Q Consensus 308 l~~~~ 312 (426)
|.+.+
T Consensus 163 i~~~i 167 (170)
T 1z0j_A 163 ISRRI 167 (170)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98764
No 122
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.69 E-value=3.1e-17 Score=168.91 Aligned_cols=160 Identities=24% Similarity=0.260 Sum_probs=94.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+.++|+|+|.||||||||+|+|++..... +...|+.+ ++.. -+.+.
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~------------v~~~~g~t----~~~~--------------~~~~~--- 67 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISI------------VEDTPGVT----RDRI--------------YSSAE--- 67 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC---------------------------CE--------------EEECT---
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcc------------cCCCCCcc----eeEE--------------EEEEE---
Confidence 346799999999999999999999976432 23333333 1111 00011
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH--hcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~--~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
..+..+.||||||+... .......+..... ...+|++|+|+|+..++...+. .+.
T Consensus 68 ----------------~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~-----~l~ 124 (456)
T 4dcu_A 68 ----------------WLNYDFNLIDTGGIDIG--DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADE-----EVA 124 (456)
T ss_dssp ----------------TCSSCCEEECCCC--------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHH-----HHH
T ss_pred ----------------ECCceEEEEECCCCCCc--chHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHH-----HHH
Confidence 24568999999997632 1111222222221 1347999999999888776552 344
Q ss_pred HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh--hcCCceEEeecccCCCHH
Q 014354 225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~vv~vSA~~g~gv~ 302 (426)
..+...++|+|||+||+|+...... +. ++ .++..++++||++|.|+.
T Consensus 125 ~~l~~~~~pvilV~NK~D~~~~~~~--~~-----------------------------e~~~lg~~~~~~iSA~~g~gv~ 173 (456)
T 4dcu_A 125 KILYRTKKPVVLAVNKLDNTEMRAN--IY-----------------------------DFYSLGFGEPYPISGTHGLGLG 173 (456)
T ss_dssp HHHTTCCSCEEEEEECC-----------C-----------------------------CSGGGSSSSEEECCTTTCTTHH
T ss_pred HHHHHcCCCEEEEEECccchhhhhh--HH-----------------------------HHHHcCCCceEEeecccccchH
Confidence 5567789999999999998643210 00 11 123467899999999999
Q ss_pred HHHHHHHHHHH
Q 014354 303 AYFKAVEESAQ 313 (426)
Q Consensus 303 ~l~~~l~~~~~ 313 (426)
+|++++...++
T Consensus 174 ~L~~~i~~~l~ 184 (456)
T 4dcu_A 174 DLLDAVAEHFK 184 (456)
T ss_dssp HHHHHHHTTGG
T ss_pred HHHHHHHhhcc
Confidence 99999987654
No 123
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.69 E-value=1.5e-16 Score=162.88 Aligned_cols=118 Identities=13% Similarity=0.189 Sum_probs=71.2
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhh--hhHHHHHHHHhhccCC-eEEEEec
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFM--SNMLYACSILYKTRLP-LVLAFNK 240 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~--~~~l~~~~~l~~~~~P-~IlVlNK 240 (426)
.+.++.||||||+.++. ..+...+ ..+|++|+|||+..+.....|. ......+..+...++| +|+|+||
T Consensus 93 ~~~~~~iiDTPGh~~f~------~~~~~~~--~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK 164 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFV------PNMIGGA--SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINK 164 (439)
T ss_pred CCeEEEEEECCChHHHH------HHHHhhH--hhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeec
Confidence 44689999999997752 2222222 3479999999999876421100 0113344455667888 8999999
Q ss_pred CCCCChH----hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 241 TDVAQHE----FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 241 iDl~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
+|+.... ....+...+..+... ++.. .....++|++||++|.|+.++.+
T Consensus 165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~--------------~g~~---~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 165 MDDPTVNWSNERYEECKEKLVPFLKK--------------VGFN---PKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHH--------------hccc---ccCCeeEEEeeccCCcccccccc
Confidence 9997532 122222223222111 1100 00246899999999999999765
No 124
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.69 E-value=1.6e-16 Score=150.48 Aligned_cols=183 Identities=14% Similarity=0.106 Sum_probs=105.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccccccc-ccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPF-AANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~-~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
.+..+|+|+|.+|||||||+|+|++........ .+. +| . .+.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~------------~~~~~T-~--------------------~~~~~~~ 65 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRL------------GATSVT-R--------------------ACTTGSR 65 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------------------C-C--------------------SCEEEEE
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccC------------CCCCcc-c--------------------cEEEEEE
Confidence 456799999999999999999999987543110 010 11 0 0000000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccch--hchHHHHHHHH--HhcCCcEEEEEEeCCCCCCchhhhhhHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW--SASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNML 221 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~--~~~~~~l~~~~--~~~~~d~vl~VVDa~~~~~~~~~~~~~l 221 (426)
. ..+.++.||||||+.+.... ......+...+ ....+|++|+|+|+.+ +...+.
T Consensus 66 ~----------------~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~----- 123 (247)
T 3lxw_A 66 R----------------WDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQ----- 123 (247)
T ss_dssp E----------------ETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHH-----
T ss_pred E----------------ECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHH-----
Confidence 0 23468999999999654211 01112222222 2255899999999975 433221
Q ss_pred HHHHHHhh------ccCCeEEEEecCCCCChHhHHHHHH-----HHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCce
Q 014354 222 YACSILYK------TRLPLVLAFNKTDVAQHEFALEWMQ-----DFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKS 290 (426)
Q Consensus 222 ~~~~~l~~------~~~P~IlVlNKiDl~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v 290 (426)
.++..+.. .+.|+|||+||+|+.... ..+... .++.+. ..+ ..++
T Consensus 124 ~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~-~~~~l~~~~~~~l~~l~---------------------~~~--g~~~ 179 (247)
T 3lxw_A 124 QAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGS-LHDYVSNTENRALRELV---------------------AEC--GGRV 179 (247)
T ss_dssp HHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHH---------------------HHT--TTCE
T ss_pred HHHHHHHHHhChhhhccEEEEEEchHhcCCCC-HHHHHhhcccHHHHHHH---------------------HHc--CCeE
Confidence 12222222 278999999999997642 111211 112111 111 1234
Q ss_pred EEeeccc-----CCCHHHHHHHHHHHHHH-HHhhhhhHHHhHHH
Q 014354 291 VGVSSVS-----GAGIEAYFKAVEESAQE-FMETYKADLDKRRA 328 (426)
Q Consensus 291 v~vSA~~-----g~gv~~l~~~l~~~~~~-~~~~~~~~~~~~~~ 328 (426)
+.+++.. +.|+.+|++.|.+.+++ ...+|+.++++...
T Consensus 180 ~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~~~~~ 223 (247)
T 3lxw_A 180 CAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELAQ 223 (247)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred EEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 4454433 68999999999999987 56678877766543
No 125
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.69 E-value=9.9e-17 Score=143.33 Aligned_cols=167 Identities=17% Similarity=0.230 Sum_probs=98.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|++|||||||+|+|++..+..... |.+ +..+.. ..+..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------~~~-----~~~~~~-------------------~~~~~--- 54 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSN-------HTI-----GVEFGS-------------------KIINV--- 54 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCC-------CCS-----EEEEEE-------------------EEEEE---
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-------Ccc-----ceEEEE-------------------EEEEE---
Confidence 45789999999999999999999876542110 000 000000 00000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
. .....+.||||||+.++. .+... ....+|++++|+|+....+... ....+..+...
T Consensus 55 -~-------------~~~~~~~l~Dt~G~~~~~-------~~~~~-~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~ 111 (186)
T 2bme_A 55 -G-------------GKYVKLQIWDTAGQERFR-------SVTRS-YYRGAAGALLVYDITSRETYNA-LTNWLTDARML 111 (186)
T ss_dssp -T-------------TEEEEEEEEEECCSGGGH-------HHHHT-TSTTCSEEEEEEETTCHHHHHT-HHHHHHHHHHH
T ss_pred -C-------------CEEEEEEEEeCCCcHHHH-------HHHHH-HHhcCCEEEEEEECcCHHHHHH-HHHHHHHHHHh
Confidence 0 122578999999987641 11111 1134799999999976332111 11111112223
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...++|+++|+||+|+....... . .....+. . ....+++++||++|.|+.+++++
T Consensus 112 ~~~~~piilv~nK~Dl~~~~~~~-~-~~~~~~~----------------------~-~~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 112 ASQNIVIILCGNKKDLDADREVT-F-LEASRFA----------------------Q-ENELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp SCTTCEEEEEEECGGGGGGCCSC-H-HHHHHHH----------------------H-HTTCEEEECCTTTCTTHHHHHHH
T ss_pred cCCCCcEEEEEECcccccccccC-H-HHHHHHH----------------------H-HcCCEEEEecCCCCCCHHHHHHH
Confidence 34578999999999996532211 0 0111110 0 12357999999999999999999
Q ss_pred HHHHHHHHH
Q 014354 308 VEESAQEFM 316 (426)
Q Consensus 308 l~~~~~~~~ 316 (426)
|.+.+....
T Consensus 167 l~~~~~~~~ 175 (186)
T 2bme_A 167 CARKILNKI 175 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 998876643
No 126
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.69 E-value=2.3e-16 Score=157.64 Aligned_cols=178 Identities=19% Similarity=0.208 Sum_probs=98.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
.++|+|+|++|||||||+|+|++.... +...+++| ++. ..+.+.
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~-------------~~~~~~~T----~d~--------------~~~~i~----- 222 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQK-------------VDTKLFTT----MSP--------------KRYAIP----- 222 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC----------------------------CCS--------------CEEEEE-----
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCcc-------------ccCCcccc----cCC--------------EEEEEE-----
Confidence 446999999999999999999987532 22233333 100 001111
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCCCC-chhhhhhHHHHHHH
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSAN-PMTFMSNMLYACSI 226 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~~~-~~~~~~~~l~~~~~ 226 (426)
..+..+.++||||+....++..... +...+. ...+|++++|+|+++... ...........+..
T Consensus 223 --------------~~g~~v~l~DT~G~i~~lp~~lve~-f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~ 287 (364)
T 2qtf_A 223 --------------INNRKIMLVDTVGFIRGIPPQIVDA-FFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILRE 287 (364)
T ss_dssp --------------ETTEEEEEEECCCBCSSCCGGGHHH-HHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred --------------ECCEEEEEEeCCCchhcCCHHHHHH-HHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH
Confidence 1235688999999855322221111 222222 245799999999876431 11111111222233
Q ss_pred HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCCCHHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~gv~~l~ 305 (426)
+...++|+|+|+||+|+.+... .........+.. .+ ....+++++||++|.|+++|+
T Consensus 288 l~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~l~~---------------------~l~~~~~~~~~~SA~~g~gi~~L~ 345 (364)
T 2qtf_A 288 IGVSGKPILVTLNKIDKINGDL-YKKLDLVEKLSK---------------------ELYSPIFDVIPISALKRTNLELLR 345 (364)
T ss_dssp HTCCSCCEEEEEECGGGCCSCH-HHHHHHHHHHHH---------------------HHCSCEEEEEECBTTTTBSHHHHH
T ss_pred hCcCCCCEEEEEECCCCCCchH-HHHHHHHHHHHH---------------------HhcCCCCcEEEEECCCCcCHHHHH
Confidence 3335789999999999987531 111111111111 11 122358999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 014354 306 KAVEESAQEFMETY 319 (426)
Q Consensus 306 ~~l~~~~~~~~~~~ 319 (426)
++|.+.+....+++
T Consensus 346 ~~I~~~l~~~~~~~ 359 (364)
T 2qtf_A 346 DKIYQLATQLSLEH 359 (364)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHhcccCCCC
Confidence 99999877655443
No 127
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=145.04 Aligned_cols=172 Identities=19% Similarity=0.205 Sum_probs=92.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..+..+|+|+|.+|||||||+|+|++..+..... +... ..+.. ..+.
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------~t~~-~~~~~-----------------------~~~~-- 71 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENIS-------ATLG-VDFQM-----------------------KTLI-- 71 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC------------------CEE-----------------------EEEE--
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCC-------CCcc-ceeEE-----------------------EEEE--
Confidence 4567899999999999999999999876432110 0000 00000 0000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
+ ......+.||||||+.++. ......+. .+|++|+|+|+......... ...+..+.
T Consensus 72 --~-------------~~~~~~l~i~Dt~G~~~~~------~~~~~~~~--~~d~iilv~d~~~~~s~~~~-~~~~~~i~ 127 (199)
T 2p5s_A 72 --V-------------DGERTVLQLWDTAGQERFR------SIAKSYFR--KADGVLLLYDVTCEKSFLNI-REWVDMIE 127 (199)
T ss_dssp --E-------------TTEEEEEEEEECTTCTTCH------HHHHHHHH--HCSEEEEEEETTCHHHHHTH-HHHHHHHH
T ss_pred --E-------------CCEEEEEEEEECCCCcchh------hhHHHHHh--hCCEEEEEEECCChHHHHHH-HHHHHHHH
Confidence 0 0123578999999987652 11222222 36999999998754322111 11111112
Q ss_pred HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
.....++|+|||+||+|+.......... .+ .....+.++. .+ ..+++++||++|.|+.+++
T Consensus 128 ~~~~~~~piilv~NK~Dl~~~~~~~~~~-~v-------------~~~~~~~~~~----~~-~~~~~~~SA~~g~gv~el~ 188 (199)
T 2p5s_A 128 DAAHETVPIMLVGNKADIRDTAATEGQK-CV-------------PGHFGEKLAM----TY-GALFCETSAKDGSNIVEAV 188 (199)
T ss_dssp HHC---CCEEEEEECGGGHHHHHHTTCC-CC-------------CHHHHHHHHH----HH-TCEEEECCTTTCTTHHHHH
T ss_pred HhcCCCCCEEEEEECccccccccccccc-cc-------------CHHHHHHHHH----Hc-CCeEEEeeCCCCCCHHHHH
Confidence 2223478999999999986321100000 00 0000001111 11 3579999999999999999
Q ss_pred HHHHHHHH
Q 014354 306 KAVEESAQ 313 (426)
Q Consensus 306 ~~l~~~~~ 313 (426)
.+|.+.+.
T Consensus 189 ~~l~~~i~ 196 (199)
T 2p5s_A 189 LHLAREVK 196 (199)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99987653
No 128
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.68 E-value=2.6e-16 Score=146.16 Aligned_cols=166 Identities=15% Similarity=0.208 Sum_probs=94.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+.++|+|+|.+|||||||+++++...+....... + .++.... ...
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~T-------i-------g~d~~~k-----------------~~~---- 56 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQAT-------I-------GIDFLSK-----------------TMY---- 56 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC------------------------CEEE-----------------EEE----
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCc-------c-------ceEEEEE-----------------EEE----
Confidence 4579999999999999999999987654322111 1 0000000 000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
. ....+.+.||||+|+.++.. +...+- ..++++++|.|.....+-.. ....+..+...
T Consensus 57 -~------------~~~~v~l~iwDtaGqe~~~~-------l~~~~~-~~a~~~ilv~di~~~~Sf~~-i~~~~~~i~~~ 114 (216)
T 4dkx_A 57 -L------------EDRTIRLQLWDTAGLERFRS-------LIPSYI-RDSAAAVVVYDITNVNSFQQ-TTKWIDDVRTE 114 (216)
T ss_dssp -C------------SSCEEEEEEECCSCTTTCGG-------GHHHHH-TTCSEEEEEEETTCHHHHHT-HHHHHHHHHHH
T ss_pred -e------------cceEEEEEEEECCCchhhhh-------HHHHHh-ccccEEEEEeecchhHHHHH-HHHHHHHHHHh
Confidence 0 02336788999999988631 111111 34688899998864322111 00011111222
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...++|+|||.||+|+...+.+. .+....+ ++ .+ .++++.+||++|.||+++|..
T Consensus 115 ~~~~~piilVgNK~Dl~~~r~V~--~~e~~~~--------------a~--------~~-~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 115 RGSDVIIMLVGNKTDLADKRQVS--IEEGERK--------------AK--------EL-NVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp HTTSSEEEEEEECTTCGGGCCSC--HHHHHHH--------------HH--------HH-TCEEEEEBTTTTBSHHHHHHH
T ss_pred cCCCCeEEEEeeccchHhcCccc--HHHHhhH--------------HH--------Hh-CCeeEEEeCCCCcCHHHHHHH
Confidence 34578999999999987643211 0111111 11 11 256899999999999999999
Q ss_pred HHHHHHHH
Q 014354 308 VEESAQEF 315 (426)
Q Consensus 308 l~~~~~~~ 315 (426)
|.+.++..
T Consensus 170 i~~~i~~~ 177 (216)
T 4dkx_A 170 VAAALPGM 177 (216)
T ss_dssp HHHHC---
T ss_pred HHHHHHhh
Confidence 98876543
No 129
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.68 E-value=6.7e-17 Score=143.01 Aligned_cols=163 Identities=18% Similarity=0.198 Sum_probs=94.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..+|+|+|++|||||||+|+|++..+.... .+ +..++... ..+. +
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~-------------~~-~~~~~~~~-----------------~~~~----~ 58 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTY-------------QA-TIGIDFLS-----------------KTMY----L 58 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSC-------------CC-CCSEEEEE-----------------EEEE----E
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC-------------CC-ceeeEEEE-----------------EEEE----E
Confidence 478999999999999999999977543211 01 00000000 0000 0
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~ 228 (426)
. .....+.||||||+.++.. .. ...+ ..+|++++|+|+....+... ....+..+....
T Consensus 59 ~-------------~~~~~~~~~Dt~G~~~~~~--~~----~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~ 116 (179)
T 2y8e_A 59 E-------------DRTVRLQLWDTAGQERFRS--LI----PSYI--RDSTVAVVVYDITNTNSFHQ-TSKWIDDVRTER 116 (179)
T ss_dssp T-------------TEEEEEEEEEECCSGGGGG--GS----HHHH--HTCSEEEEEEETTCHHHHHT-HHHHHHHHHHHH
T ss_pred C-------------CeEEEEEEEECCCcHHHHH--HH----HHHh--cCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhc
Confidence 0 1225789999999877521 11 1112 34799999999875321111 111111111122
Q ss_pred hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354 229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l 308 (426)
..++|+++|+||+|+........ .....+.. . ...+++++||++|.|+.+++++|
T Consensus 117 ~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~i~~l~~~l 171 (179)
T 2y8e_A 117 GSDVIIMLVGNKTDLSDKRQVST--EEGERKAK---------------------E--LNVMFIETSAKAGYNVKQLFRRV 171 (179)
T ss_dssp TTSSEEEEEEECGGGGGGCCSCH--HHHHHHHH---------------------H--HTCEEEEEBTTTTBSHHHHHHHH
T ss_pred CCCCcEEEEEECCcccccCcCCH--HHHHHHHH---------------------H--cCCeEEEEeCCCCCCHHHHHHHH
Confidence 35789999999999875432110 01110000 0 13579999999999999999999
Q ss_pred HHHHH
Q 014354 309 EESAQ 313 (426)
Q Consensus 309 ~~~~~ 313 (426)
.+.++
T Consensus 172 ~~~~~ 176 (179)
T 2y8e_A 172 AAALP 176 (179)
T ss_dssp HHTCC
T ss_pred HHHHh
Confidence 87553
No 130
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.68 E-value=1.6e-18 Score=160.33 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=72.8
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh--ccCCeEEEEecCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTD 242 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~--~~~P~IlVlNKiD 242 (426)
...+.||||||+..+.... .. .+ ..++++++|+|+....+... ...++..+.. .++|+|||+||+|
T Consensus 63 ~~~~~i~Dt~G~~~~~~~~--~~----~~--~~~~~~i~v~d~~~~~s~~~----~~~~~~~~~~~~~~~p~ilv~nK~D 130 (221)
T 3gj0_A 63 PIKFNVWDTAGQEKFGGLR--DG----YY--IQAQCAIIMFDVTSRVTYKN----VPNWHRDLVRVCENIPIVLCGNKVD 130 (221)
T ss_dssp EEEEEEEEECSGGGTSCCC--HH----HH--TTCCEEEEEEETTCHHHHHT----HHHHHHHHHHHSTTCCEEEEEECTT
T ss_pred EEEEEEEeCCChHHHhHHH--HH----HH--hcCCEEEEEEECCCHHHHHH----HHHHHHHHHHhCCCCCEEEEEECCc
Confidence 3678999999987652111 11 11 35799999999976432211 1112222222 3789999999999
Q ss_pred CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHHHhh
Q 014354 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMET 318 (426)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~~~ 318 (426)
+.......... .+.+ ....+++++||++|.|+.+++.+|.+.+...++.
T Consensus 131 l~~~~~~~~~~------------------~~~~---------~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~~~ 179 (221)
T 3gj0_A 131 IKDRKVKAKSI------------------VFHR---------KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179 (221)
T ss_dssp SSSCSSCGGGC------------------CHHH---------HHTCEEEECBGGGTBTTTHHHHHHHHHHHTCTTC
T ss_pred cccccccHHHH------------------HHHH---------HcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCccc
Confidence 97643211000 0000 1135799999999999999999999988775543
No 131
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.68 E-value=1e-16 Score=140.38 Aligned_cols=161 Identities=17% Similarity=0.209 Sum_probs=93.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..+|+|+|++|||||||+|+|++........ |.......... +..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-------~~~~~~~~~~~-----------------------~~~----- 47 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKE-------PTIGAAFLTQR-----------------------VTI----- 47 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCC-------CCSSEEEEEEE-----------------------EEE-----
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCC-------CccceeEEEEE-----------------------EEE-----
Confidence 3679999999999999999999876432110 10000000000 000
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~ 228 (426)
. .....+.||||||+.++.. . ....+ ..+|++++|+|+....+... ...++..+.
T Consensus 48 ~-------------~~~~~~~~~D~~G~~~~~~---~---~~~~~--~~~d~~i~v~d~~~~~s~~~----~~~~~~~~~ 102 (170)
T 1ek0_A 48 N-------------EHTVKFEIWDTAGQERFAS---L---APXYY--RNAQAALVVYDVTKPQSFIK----ARHWVKELH 102 (170)
T ss_dssp T-------------TEEEEEEEEEECCSGGGGG---G---HHHHH--TTCSEEEEEEETTCHHHHHH----HHHHHHHHH
T ss_pred C-------------CEEEEEEEEECCCChhhhh---h---hhhhh--ccCcEEEEEEecCChHHHHH----HHHHHHHHH
Confidence 0 1235789999999876521 1 11122 35799999999975322111 111122222
Q ss_pred ---hccCCeEEEEecCCCCChHhHHHH-HHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 229 ---KTRLPLVLAFNKTDVAQHEFALEW-MQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 229 ---~~~~P~IlVlNKiDl~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
..+.|+++|+||+|+........+ ......+ + .. ...+++++||++|.|+.++
T Consensus 103 ~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~------------------~----~~-~~~~~~~~Sa~~~~gi~~l 159 (170)
T 1ek0_A 103 EQASKDIIIALVGNKIDXLQEGGERKVAREEGEKL------------------A----EE-KGLLFFETSAKTGENVNDV 159 (170)
T ss_dssp HHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHH------------------H----HH-HTCEEEECCTTTCTTHHHH
T ss_pred HhcCCCCcEEEEEECCCccccccccCCCHHHHHHH------------------H----HH-cCCEEEEEeCCCCCCHHHH
Confidence 347899999999998754110000 0001100 0 00 1357999999999999999
Q ss_pred HHHHHHHH
Q 014354 305 FKAVEESA 312 (426)
Q Consensus 305 ~~~l~~~~ 312 (426)
+++|.+.+
T Consensus 160 ~~~l~~~i 167 (170)
T 1ek0_A 160 FLGIGEKI 167 (170)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHHH
Confidence 99987643
No 132
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.68 E-value=7.2e-17 Score=159.27 Aligned_cols=162 Identities=19% Similarity=0.219 Sum_probs=95.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
.++..+|+|+|.+|||||||+++|++..+.. ..| +..+. ....
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~--------------~~p-T~~~~----------------------~~~~ 204 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVT--------------TIP-TIGFN----------------------VETV 204 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEE--------------EEE-ETTEE----------------------EEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCC--------------ccc-ccceE----------------------EEEE
Confidence 3456799999999999999999998865321 111 11000 0000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
. ..+..+.||||||+..+.. . ....+ ..+|++|+|+|+.......... ..+..
T Consensus 205 ~----------------~~~~~l~i~Dt~G~~~~~~---~---~~~~~--~~ad~vilV~D~~~~~s~~~~~---~~~~~ 257 (329)
T 3o47_A 205 E----------------YKNISFTVWDVGGQDKIRP---L---WRHYF--QNTQGLIFVVDSNDRERVNEAR---EELMR 257 (329)
T ss_dssp E----------------ETTEEEEEEECC-----CC---S---HHHHH--TTEEEEEEEEETTCSSSHHHHH---HHHHH
T ss_pred e----------------cCcEEEEEEECCCCHhHHH---H---HHHHh--ccCCEEEEEEECCchHHHHHHH---HHHHH
Confidence 0 2346899999999876521 1 11112 3469999999997543322211 12222
Q ss_pred HHhh---ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354 226 ILYK---TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 226 ~l~~---~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~ 302 (426)
.+.. .++|+|||+||+|+........+...+. ... ......+++++||++|.||+
T Consensus 258 ~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~---------------------~~~-~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 258 MLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---------------------LHS-LRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp HHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHT---------------------CTT-CCSSCEEEEECBTTTTBTHH
T ss_pred HHhhhccCCCeEEEEEECccCCcccCHHHHHHHhc---------------------hhh-hhcCCCEEEEEECCCCcCHH
Confidence 2332 3789999999999987543322322211 000 00123579999999999999
Q ss_pred HHHHHHHHHHH
Q 014354 303 AYFKAVEESAQ 313 (426)
Q Consensus 303 ~l~~~l~~~~~ 313 (426)
+++++|.+.+.
T Consensus 316 el~~~l~~~l~ 326 (329)
T 3o47_A 316 EGLDWLSNQLR 326 (329)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999988664
No 133
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.68 E-value=4.1e-16 Score=138.08 Aligned_cols=163 Identities=18% Similarity=0.143 Sum_probs=94.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|.+|||||||+++|++..+.... .|.+ .++.. ...+.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~-------~~t~-------~~~~~-----------------~~~~~---- 49 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQY-------KQTI-------GLDFF-----------------LRRIT---- 49 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHH-------HHTT-------TSSEE-----------------EEEEE----
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCC-------CCce-------eEEEE-----------------EEEEE----
Confidence 4578999999999999999999987643100 0000 00000 00000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
+.+ .....+.||||||+..+.. . ....+ ..+|++++|+|+....+... ...++..+
T Consensus 50 ~~~------------~~~~~~~~~Dt~G~~~~~~---~---~~~~~--~~~d~~i~v~d~~~~~s~~~----~~~~~~~i 105 (178)
T 2hxs_A 50 LPG------------NLNVTLQIWDIGGQTIGGK---M---LDKYI--YGAQGVLLVYDITNYQSFEN----LEDWYTVV 105 (178)
T ss_dssp ETT------------TEEEEEEEEECTTCCTTCT---T---HHHHH--TTCSEEEEEEETTCHHHHHT----HHHHHHHH
T ss_pred eCC------------CCEEEEEEEECCCCccccc---h---hhHHH--hhCCEEEEEEECCCHHHHHH----HHHHHHHH
Confidence 000 0126889999999977521 1 11112 35799999999975332111 11112222
Q ss_pred hh-----ccCC-eEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354 228 YK-----TRLP-LVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (426)
Q Consensus 228 ~~-----~~~P-~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv 301 (426)
.. ...| ++||+||+|+....... .+....+.. . + ..+++++||++|.|+
T Consensus 106 ~~~~~~~~~~~~iilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~~~gi 160 (178)
T 2hxs_A 106 KKVSEESETQPLVALVGNKIDLEHMRTIK--PEKHLRFCQ---------------------E-N-GFSSHFVSAKTGDSV 160 (178)
T ss_dssp HHHHHHHTCCCEEEEEEECGGGGGGCSSC--HHHHHHHHH---------------------H-H-TCEEEEECTTTCTTH
T ss_pred HHHhcccCCCCeEEEEEEccccccccccC--HHHHHHHHH---------------------H-c-CCcEEEEeCCCCCCH
Confidence 22 2566 78999999987532110 011111110 1 1 257999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014354 302 EAYFKAVEESAQE 314 (426)
Q Consensus 302 ~~l~~~l~~~~~~ 314 (426)
.+++.+|.+.+..
T Consensus 161 ~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 161 FLCFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 134
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.68 E-value=1.5e-16 Score=139.40 Aligned_cols=160 Identities=15% Similarity=0.183 Sum_probs=94.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|.+|||||||+|+|++........ +.. +...... .+..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-------~~~-----~~~~~~~------------------~~~~---- 50 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQE-------STI-----GAAFLTQ------------------TVCL---- 50 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC-------CCS-----SEEEEEE------------------EEEE----
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCC-------Ccc-----ceEEEEE------------------EEEE----
Confidence 45789999999999999999999875432100 000 0000000 0000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
......+.||||||+.++.. . ....+ ..+|++++|+|+....+ +.. ...++..+
T Consensus 51 --------------~~~~~~~~~~D~~G~~~~~~---~---~~~~~--~~~d~~i~v~d~~~~~s---~~~-~~~~~~~~ 104 (170)
T 1r2q_A 51 --------------DDTTVKFEIWDTAGQERYHS---L---APMYY--RGAQAAIVVYDITNEES---FAR-AKNWVKEL 104 (170)
T ss_dssp --------------TTEEEEEEEEEECCSGGGGG---G---HHHHH--TTCSEEEEEEETTCHHH---HHH-HHHHHHHH
T ss_pred --------------CCEEEEEEEEeCCCcHHhhh---h---hHHhc--cCCCEEEEEEECCCHHH---HHH-HHHHHHHH
Confidence 01236789999999876521 1 11111 45799999999975422 111 11122222
Q ss_pred h---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 228 ~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
. ..++|+++|+||+|+....... ......+.. ....+++++||++|.|+.++
T Consensus 105 ~~~~~~~~~iilv~nK~Dl~~~~~~~--~~~~~~~~~-----------------------~~~~~~~~~Sa~~g~gi~~l 159 (170)
T 1r2q_A 105 QRQASPNIVIALSGNKADLANKRAVD--FQEAQSYAD-----------------------DNSLLFMETSAKTSMNVNEI 159 (170)
T ss_dssp HHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHH-----------------------HTTCEEEECCTTTCTTHHHH
T ss_pred HHhcCCCCcEEEEEECccCccccccC--HHHHHHHHH-----------------------HcCCeEEEEeCCCCCCHHHH
Confidence 2 3478999999999986542210 011111100 12357999999999999999
Q ss_pred HHHHHHHH
Q 014354 305 FKAVEESA 312 (426)
Q Consensus 305 ~~~l~~~~ 312 (426)
+++|.+.+
T Consensus 160 ~~~i~~~~ 167 (170)
T 1r2q_A 160 FMAIAKKL 167 (170)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHHH
Confidence 99998654
No 135
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.68 E-value=2.3e-16 Score=160.12 Aligned_cols=115 Identities=21% Similarity=0.291 Sum_probs=75.8
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCCC-CchhhhhhHHHHHHHHhhcc-CCeEEEEecCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTR-LPLVLAFNKTD 242 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~~-~~~~~~~~~l~~~~~l~~~~-~P~IlVlNKiD 242 (426)
..+.||||||+.++. . .+.. ...+|++|+|||+..+. .++++. .+..+...+ .|+|+|+||+|
T Consensus 83 ~~i~iiDtPGh~~f~------~---~~~~~~~~~D~~ilVvda~~g~~~~qt~e-----~l~~~~~~~~~~iivviNK~D 148 (410)
T 1kk1_A 83 RRVSFIDAPGHEALM------T---TMLAGASLMDGAILVIAANEPCPRPQTRE-----HLMALQIIGQKNIIIAQNKIE 148 (410)
T ss_dssp EEEEEEECSSHHHHH------H---HHHHCGGGCSEEEEEEETTSCSSCHHHHH-----HHHHHHHHTCCCEEEEEECGG
T ss_pred cEEEEEECCChHHHH------H---HHHhhhhhCCEEEEEEECCCCCCChhHHH-----HHHHHHHcCCCcEEEEEECcc
Confidence 578999999986641 1 1222 13579999999999876 454432 222233334 47899999999
Q ss_pred CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
+..........+.+..+... .+....+++++||++|.|+.+|+++|...++.
T Consensus 149 l~~~~~~~~~~~~i~~~l~~--------------------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 149 LVDKEKALENYRQIKEFIEG--------------------TVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp GSCHHHHHHHHHHHHHHHTT--------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHHh--------------------cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 99876433333333221110 11235789999999999999999999876653
No 136
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=145.33 Aligned_cols=167 Identities=15% Similarity=0.201 Sum_probs=94.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+|+|.+|||||||+|+|++..+..... |.+.... .. ..+.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~-------~t~~~~~-~~-----------------------~~~~--- 68 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSN-------HTIGVEF-GS-----------------------RVVN--- 68 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------------CCE-EE-----------------------EEEE---
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCC-------Cccccee-EE-----------------------EEEE---
Confidence 345799999999999999999999876432110 1000000 00 0000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
+. .....+.||||||+.++... ....+ ..+|++|+|+|+........ ....+..+..
T Consensus 69 -~~-------------~~~~~l~l~Dt~G~~~~~~~------~~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~ 125 (200)
T 2o52_A 69 -VG-------------GKTVKLQIWDTAGQERFRSV------TRSYY--RGAAGALLVYDITSRETYNS-LAAWLTDART 125 (200)
T ss_dssp -ET-------------TEEEEEEEECCTTHHHHSCC------CHHHH--TTCSEEEEEEETTCHHHHHT-HHHHHHHHHH
T ss_pred -EC-------------CeeeEEEEEcCCCcHhHHHH------HHHHh--ccCCEEEEEEECcCHHHHHH-HHHHHHHHHH
Confidence 00 12257899999998664211 11111 34799999999976332111 1111111111
Q ss_pred HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
....++|++||+||+|+....... . .....+. . ....+++++||++|.|+.+++.
T Consensus 126 ~~~~~~piilv~nK~Dl~~~~~v~-~-~~~~~~~----------------------~-~~~~~~~~~SA~~g~gi~~l~~ 180 (200)
T 2o52_A 126 LASPNIVVILCGNKKDLDPEREVT-F-LEASRFA----------------------Q-ENELMFLETSALTGENVEEAFL 180 (200)
T ss_dssp HTCTTCEEEEEEECGGGGGGCCSC-H-HHHHHHH----------------------H-HTTCEEEEECTTTCTTHHHHHH
T ss_pred hcCCCCcEEEEEECCCcccccccC-H-HHHHHHH----------------------H-HcCCEEEEEeCCCCCCHHHHHH
Confidence 223578999999999986543210 0 0111110 0 1235799999999999999999
Q ss_pred HHHHHHHHH
Q 014354 307 AVEESAQEF 315 (426)
Q Consensus 307 ~l~~~~~~~ 315 (426)
+|.+.+...
T Consensus 181 ~l~~~i~~~ 189 (200)
T 2o52_A 181 KCARTILNK 189 (200)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887654
No 137
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.68 E-value=1.3e-16 Score=162.03 Aligned_cols=114 Identities=18% Similarity=0.229 Sum_probs=68.6
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCCC-CchhhhhhHHHHHHHHhhcc-CCeEEEEecCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTR-LPLVLAFNKTD 242 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~~-~~~~~~~~~l~~~~~l~~~~-~P~IlVlNKiD 242 (426)
..+.||||||+.++. ..+.. ...+|++|+|+|+..+. .++++. .+..+...+ .|+|+|+||+|
T Consensus 81 ~~i~iiDtPGh~~f~---------~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-----~l~~~~~l~~~~iivv~NK~D 146 (408)
T 1s0u_A 81 RRVSFVDSPGHETLM---------ATMLSGASLMDGAILVIAANEPCPQPQTKE-----HLMALEILGIDKIIIVQNKID 146 (408)
T ss_dssp EEEEEEECSSHHHHH---------HHHHTTCSCCSEEEEEEETTSCSSCHHHHH-----HHHHHHHTTCCCEEEEEECTT
T ss_pred cEEEEEECCCHHHHH---------HHHHHhHhhCCEEEEEEECCCCCCCchhHH-----HHHHHHHcCCCeEEEEEEccC
Confidence 578999999986641 11222 24579999999999876 454432 222233334 47999999999
Q ss_pred CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (426)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~ 313 (426)
+..........+.+..+... .+....++|++||++|.|+.+|+++|...++
T Consensus 147 l~~~~~~~~~~~~i~~~l~~--------------------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 147 LVDEKQAEENYEQIKEFVKG--------------------TIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp SSCTTTTTTHHHHHHHHHTT--------------------STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHhh--------------------cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 98764322222222221110 1123578999999999999999999987654
No 138
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=1.5e-16 Score=145.57 Aligned_cols=165 Identities=18% Similarity=0.179 Sum_probs=96.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|.+|||||||+++|++..+..... |.+ .++... ..+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~-------~t~-------~~~~~~-----------------~~~~---- 69 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQG-------ATI-------GVDFMI-----------------KTVE---- 69 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCC-------CCC-------SEEEEE-----------------EEEE----
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCC-------Ccc-------ceeEEE-----------------EEEE----
Confidence 45799999999999999999999876432110 000 000000 0000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
+ ......+.||||||+..+. .+... ....+|++++|+|+....+... ....+..+...
T Consensus 70 ~-------------~~~~~~l~l~Dt~G~~~~~-------~~~~~-~~~~~d~~i~v~D~~~~~s~~~-~~~~~~~i~~~ 127 (201)
T 2ew1_A 70 I-------------NGEKVKLQIWDTAGQERFR-------SITQS-YYRSANALILTYDITCEESFRC-LPEWLREIEQY 127 (201)
T ss_dssp E-------------TTEEEEEEEEEECCSGGGH-------HHHGG-GSTTCSEEEEEEETTCHHHHHT-HHHHHHHHHHH
T ss_pred E-------------CCEEEEEEEEECCCcHHHH-------HHHHH-HHhcCCEEEEEEECCCHHHHHH-HHHHHHHHHHh
Confidence 0 0123578999999986641 11111 1134799999999875332111 11111112222
Q ss_pred hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354 228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~ 307 (426)
...++|+|||+||+|+.....+. ......+.. ....+++++||++|.|+.+++.+
T Consensus 128 ~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~-----------------------~~~~~~~~~Sa~~g~gv~~l~~~ 182 (201)
T 2ew1_A 128 ASNKVITVLVGNKIDLAERREVS--QQRAEEFSE-----------------------AQDMYYLETSAKESDNVEKLFLD 182 (201)
T ss_dssp SCTTCEEEEEEECGGGGGGCSSC--HHHHHHHHH-----------------------HHTCCEEECCTTTCTTHHHHHHH
T ss_pred cCCCCCEEEEEECCCCccccccC--HHHHHHHHH-----------------------HcCCEEEEEeCCCCCCHHHHHHH
Confidence 23478999999999987543210 011111100 01357999999999999999999
Q ss_pred HHHHHHH
Q 014354 308 VEESAQE 314 (426)
Q Consensus 308 l~~~~~~ 314 (426)
|...+..
T Consensus 183 l~~~i~~ 189 (201)
T 2ew1_A 183 LACRLIS 189 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887765
No 139
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.67 E-value=1.2e-16 Score=153.52 Aligned_cols=119 Identities=13% Similarity=0.190 Sum_probs=62.8
Q ss_pred CCEEEEcCCCcccccc----hhchHHHH----HHHHHh-----------cCCcEEEEEEeCCC-CCCchhhhhhHHHHHH
Q 014354 166 LDYVLVDTPGQIEIFT----WSASGAII----TEAFAS-----------TFPTVVTYVVDTPR-SANPMTFMSNMLYACS 225 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~----~~~~~~~l----~~~~~~-----------~~~d~vl~VVDa~~-~~~~~~~~~~~l~~~~ 225 (426)
..+.||||||+.+... +......+ ..++.. ..+|+++|+|+... ++...+ ...+.
T Consensus 65 ~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d-----~~~l~ 139 (274)
T 3t5d_A 65 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-----IEFMK 139 (274)
T ss_dssp EEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHH-----HHHHH
T ss_pred EEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHH-----HHHHH
Confidence 4789999999854311 22221111 122221 22568888886654 555444 22344
Q ss_pred HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
.+.. ++|+|+|+||+|+............+..... ....+++++||.+|.|+.+++
T Consensus 140 ~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~-----------------------~~~i~v~~~sa~~~~~~~~l~ 195 (274)
T 3t5d_A 140 RLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQ-----------------------EHKIKIYEFPETDDEEENKLV 195 (274)
T ss_dssp HHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHH-----------------------HTTCCCCCC-----------C
T ss_pred HHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHH-----------------------HcCCeEEcCCCCCChhHHHHH
Confidence 4444 8999999999999987655444333321111 134678899999999999999
Q ss_pred HHHHHHHH
Q 014354 306 KAVEESAQ 313 (426)
Q Consensus 306 ~~l~~~~~ 313 (426)
++|.+.+|
T Consensus 196 ~~l~~~~p 203 (274)
T 3t5d_A 196 KKIKDRLP 203 (274)
T ss_dssp HHHHHTCS
T ss_pred HHHhcCCC
Confidence 88876543
No 140
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.67 E-value=9.2e-17 Score=143.30 Aligned_cols=163 Identities=18% Similarity=0.223 Sum_probs=73.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
...+|+|+|.+|||||||+++|++..+... ..| +...+.. .....
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~-------------~~~-t~~~~~~--------------------~~~~~- 51 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNST-------------FIS-TIGIDFK--------------------IRTIE- 51 (183)
T ss_dssp EEEEEEEECCCCC----------------C-------------HHH-HHCEEEE--------------------EEEEE-
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCC-------------CCC-cccceeE--------------------EEEEE-
Confidence 457899999999999999999997653211 001 0000000 00000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
+. .....+.||||||+.++.. +... ....+|++++|+|+.... .+.. ...++..+
T Consensus 52 ~~-------------~~~~~~~l~Dt~G~~~~~~-------~~~~-~~~~~d~~i~v~d~~~~~---s~~~-~~~~~~~i 106 (183)
T 2fu5_C 52 LD-------------GKRIKLQIWDTAGQERFRT-------ITTA-YYRGAMGIMLVYDITNEK---SFDN-IRNWIRNI 106 (183)
T ss_dssp ET-------------TEEEEEEEEEC----------------CCT-TTTTCSEEEEEEETTCHH---HHHH-HHHHHHHH
T ss_pred EC-------------CEEEEEEEEcCCCChhhhh-------hHHH-HHhcCCEEEEEEECcCHH---HHHH-HHHHHHHH
Confidence 00 1236789999999866421 1000 013479999999997632 2111 11122222
Q ss_pred h---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 228 ~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
. ..++|++||+||+|+....... ......+.. . + ..+++++||++|.|+.++
T Consensus 107 ~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~~~~i~~l 161 (183)
T 2fu5_C 107 EEHASADVEKMILGNKCDVNDKRQVS--KERGEKLAL---------------------D-Y-GIKFMETSAKANINVENA 161 (183)
T ss_dssp HHHSCTTCEEEEEEEC--CCSCCCSC--HHHHHHHHH---------------------H-H-TCEEEECCC---CCHHHH
T ss_pred HHhcCCCCCEEEEEECccCCccCcCC--HHHHHHHHH---------------------H-c-CCeEEEEeCCCCCCHHHH
Confidence 2 2478999999999997643210 011111110 1 1 257999999999999999
Q ss_pred HHHHHHHHHHH
Q 014354 305 FKAVEESAQEF 315 (426)
Q Consensus 305 ~~~l~~~~~~~ 315 (426)
+.+|.+.+...
T Consensus 162 ~~~l~~~i~~~ 172 (183)
T 2fu5_C 162 FFTLARDIKAK 172 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998877653
No 141
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.49 E-value=4e-18 Score=155.51 Aligned_cols=173 Identities=15% Similarity=0.160 Sum_probs=95.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+|+|.+|||||||+++|++..+.... ..++ .+... ..+.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~----~~~~~--------------~~~~--- 72 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY--------------IPTV----FDNYS--------------ANVM--- 72 (204)
Confidence 46688999999999999999999876543211 0011 00000 0000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
.......+.||||||+.++.. .....+ ..+|++++|+|+....+..... ..+...
T Consensus 73 --------------~~~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~~d~iilv~D~~~~~s~~~~~---~~~~~~ 127 (204)
T 3th5_A 73 --------------VDGKPVNLGLWDTAGQEDYDR------LRPLSY--PQTDVFLICFSLVSPASFENVR---AKWYPE 127 (204)
Confidence 002335778999999876521 111111 3468999999987644322211 011122
Q ss_pred Hhhc--cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 227 LYKT--RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 227 l~~~--~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
+... ++|+|+|+||+|+............... ..+....+..+...++..+++++||++|.|++++
T Consensus 128 l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l 195 (204)
T 3th5_A 128 VRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL------------TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 195 (204)
Confidence 2222 7899999999999865422111111000 0000000111111122237899999999999999
Q ss_pred HHHHHHH
Q 014354 305 FKAVEES 311 (426)
Q Consensus 305 ~~~l~~~ 311 (426)
+++|.+.
T Consensus 196 ~~~l~~~ 202 (204)
T 3th5_A 196 FDEAIRA 202 (204)
Confidence 9998764
No 142
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.67 E-value=3.7e-16 Score=156.53 Aligned_cols=116 Identities=11% Similarity=0.176 Sum_probs=78.3
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCe-EEEEe-cC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPL-VLAFN-KT 241 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~-IlVlN-Ki 241 (426)
.+..+.||||||+.++. ..+...+ ..+|++|+||| ..+..+++ ...+..+...++|. |+|+| |+
T Consensus 58 ~~~~i~iiDtPGh~~f~------~~~~~~~--~~aD~ailVvd-~~g~~~qt-----~e~~~~~~~~~i~~~ivvvNNK~ 123 (370)
T 2elf_A 58 EGRNMVFVDAHSYPKTL------KSLITAL--NISDIAVLCIP-PQGLDAHT-----GECIIALDLLGFKHGIIALTRSD 123 (370)
T ss_dssp SSSEEEEEECTTTTTCH------HHHHHHH--HTCSEEEEEEC-TTCCCHHH-----HHHHHHHHHTTCCEEEEEECCGG
T ss_pred CCeEEEEEECCChHHHH------HHHHHHH--HHCCEEEEEEc-CCCCcHHH-----HHHHHHHHHcCCCeEEEEEEecc
Confidence 34679999999998762 2222222 45799999999 77766544 23344456678898 99999 99
Q ss_pred CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEE--eeccc---CCCHHHHHHHHHHHHHH
Q 014354 242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVG--VSSVS---GAGIEAYFKAVEESAQE 314 (426)
Q Consensus 242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~--vSA~~---g~gv~~l~~~l~~~~~~ 314 (426)
|+ .........+.+..+... . .+...++++ +||++ |.|+++|++.|.+.++.
T Consensus 124 Dl-~~~~~~~~~~~i~~~l~~--------------~------~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 124 ST-HMHAIDELKAKLKVITSG--------------T------VLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp GS-CHHHHHHHHHHHHHHTTT--------------S------TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHHHHh--------------c------CCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 99 654333232333221110 0 113468999 99999 99999999999887765
No 143
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.67 E-value=7e-17 Score=144.81 Aligned_cols=174 Identities=16% Similarity=0.160 Sum_probs=95.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|.+|||||||+++|++..+..... |.+. ..++. .+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-------~t~~-~~~~~-----------------------~~~~~--- 51 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYV-------PTVF-ENYTA-----------------------SFEID--- 51 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC-------CCSE-EEEEE-----------------------EEECS---
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCC-------Cccc-eeEEE-----------------------EEEEC---
Confidence 45789999999999999999999876432110 1100 00000 00000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
.....+.||||||+..+...... ....++++++|+|+....+ +......+...+
T Consensus 52 ---------------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~~i 105 (184)
T 1m7b_A 52 ---------------TQRIELSLWDTSGSPYYDNVRPL--------SYPDSDAVLICFDISRPET---LDSVLKKWKGEI 105 (184)
T ss_dssp ---------------SCEEEEEEEEECCSGGGTTTGGG--------GCTTCSEEEEEEETTCHHH---HHHHHHTHHHHH
T ss_pred ---------------CEEEEEEEEECCCChhhhhhHHh--------hcCCCcEEEEEEECCCHHH---HHHHHHHHHHHH
Confidence 12357899999998765211110 1134799999999975322 211101111222
Q ss_pred hh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecc-cCCCHHHH
Q 014354 228 YK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV-SGAGIEAY 304 (426)
Q Consensus 228 ~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~-~g~gv~~l 304 (426)
.. .+.|+|||+||+|+....... ..+. .. . ...+....+..+...++..+++++||+ +|.|+.++
T Consensus 106 ~~~~~~~piilv~nK~Dl~~~~~~~---~~~~---~~---~---~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l 173 (184)
T 1m7b_A 106 QEFCPNTKMLLVGCKSDLRTDVSTL---VELS---NH---R---QTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 173 (184)
T ss_dssp HHHCTTCEEEEEEECGGGGGCHHHH---HHHH---TT---T---CCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHH
T ss_pred HHHCCCCCEEEEEEcchhhcchhhH---hhhh---hc---c---cCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHH
Confidence 22 478999999999997542110 0000 00 0 000000001111111234679999999 68999999
Q ss_pred HHHHHHHHH
Q 014354 305 FKAVEESAQ 313 (426)
Q Consensus 305 ~~~l~~~~~ 313 (426)
++.|.+.+.
T Consensus 174 ~~~i~~~~l 182 (184)
T 1m7b_A 174 FHVATLACV 182 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987653
No 144
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.66 E-value=6.2e-17 Score=167.55 Aligned_cols=162 Identities=19% Similarity=0.276 Sum_probs=103.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
+++++|+|+|++|+|||||+++|++..+..+.. ++.| ++ -+... ..
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~-------------~GIT-~~-------------------i~~~~-v~ 47 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEA-------------GGIT-QH-------------------IGAYH-VE 47 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTB-------------CCCC-CC-------------------SSCCC-CC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccC-------------CCee-Ee-------------------EEEEE-EE
Confidence 367889999999999999999999875442211 1111 00 00000 00
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
..+..+.||||||+.++......+ ...+|++++|+|+..+..++++ ..+..
T Consensus 48 ----------------~~~~~i~~iDTPGhe~f~~~~~~~--------~~~aD~aILVVda~~g~~~qT~-----e~l~~ 98 (501)
T 1zo1_I 48 ----------------TENGMITFLDTPGHAAFTSMRARG--------AQATDIVVLVVAADDGVMPQTI-----EAIQH 98 (501)
T ss_dssp ----------------TTSSCCCEECCCTTTCCTTSBCSS--------SBSCSSEEEEEETTTBSCTTTH-----HHHHH
T ss_pred ----------------ECCEEEEEEECCCcHHHHHHHHHH--------HhhCCEEEEEeecccCccHHHH-----HHHHH
Confidence 134578999999998874322111 1457999999999998877653 33445
Q ss_pred HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
+...++|+|+|+||+|+...... ++...+. ......+.|....+++++||++|.|+.+|++
T Consensus 99 ~~~~~vPiIVviNKiDl~~~~~~-~v~~~l~------------------~~~~~~~~~~~~~~~v~vSAktG~gI~eLle 159 (501)
T 1zo1_I 99 AKAAQVPVVVAVNKIDKPEADPD-RVKNELS------------------QYGILPEEWGGESQFVHVSAKAGTGIDELLD 159 (501)
T ss_dssp HHHTTCCEEEEEECSSSSTTCCC-CTTCCCC------------------CCCCCTTCCSSSCEEEECCTTTCTTCTTHHH
T ss_pred HHhcCceEEEEEEeccccccCHH-HHHHHHH------------------HhhhhHHHhCCCccEEEEeeeeccCcchhhh
Confidence 56678999999999999753200 0100000 0001111233347899999999999999999
Q ss_pred HHHH
Q 014354 307 AVEE 310 (426)
Q Consensus 307 ~l~~ 310 (426)
+|..
T Consensus 160 ~I~~ 163 (501)
T 1zo1_I 160 AILL 163 (501)
T ss_dssp HTTT
T ss_pred hhhh
Confidence 9864
No 145
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.66 E-value=5.5e-16 Score=160.66 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=66.9
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchh--hhhhHHHHHHHHhhccC-CeEEEEec
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT--FMSNMLYACSILYKTRL-PLVLAFNK 240 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~--~~~~~l~~~~~l~~~~~-P~IlVlNK 240 (426)
.+..+.||||||+.++. ..+...+ ..+|++|+|||+..+..... ........+..+...+. |+|+|+||
T Consensus 109 ~~~~~~iiDTPG~~~f~------~~~~~~~--~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK 180 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFV------PNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNK 180 (483)
T ss_dssp SSCEEEEECCCCCGGGH------HHHHHHH--TTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred CCceEEEEECCCcHHHH------HHHHHhh--hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEEC
Confidence 45789999999997752 2222222 45899999999988632211 11111233344445554 59999999
Q ss_pred CCCCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 241 TDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 241 iDl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
+|+... ....++...+..+... ++. .....++|++||++|.|+.++
T Consensus 181 ~Dl~~~~~~~~~~i~~~~~~~l~~--------------~g~----~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 181 MDNVDWSQQRFEEIKSKLLPYLVD--------------IGF----FEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHH--------------HTC----CGGGEEEEECCSSSCTTSSSS
T ss_pred cCcccchHHHHHHHHHHHHHHHHH--------------cCC----CcccceEEEEeeecCCCcccc
Confidence 999873 2222333333322211 110 012467999999999999864
No 146
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=142.07 Aligned_cols=161 Identities=14% Similarity=0.110 Sum_probs=92.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..+..+|+|+|.+|||||||+++|++..+... +..+........ +..
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~--------------~~~t~~~~~~~~-----------------~~~-- 64 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISE--------------YDPNLEDTYSSE-----------------ETV-- 64 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSC--------------CCTTCCEEEEEE-----------------EEE--
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcc--------------cCCCccceeeEE-----------------EEE--
Confidence 34567999999999999999999998764321 111110000000 000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
......+.||||||+..+.. . ...+ ..++++++|+|..... .+... ..++.
T Consensus 65 ----------------~~~~~~l~i~Dt~G~~~~~~---~----~~~~--~~~~~~ilv~d~~~~~---s~~~~-~~~~~ 115 (187)
T 3c5c_A 65 ----------------DHQPVHLRVMDTADLDTPRN---C----ERYL--NWAHAFLVVYSVDSRQ---SFDSS-SSYLE 115 (187)
T ss_dssp ----------------TTEEEEEEEEECCC---CCC---T----HHHH--TTCSEEEEEEETTCHH---HHHHH-HHHHH
T ss_pred ----------------CCEEEEEEEEECCCCCcchh---H----HHHH--hhCCEEEEEEECCCHH---HHHHH-HHHHH
Confidence 01335788999999977532 1 1222 3479999999987432 22111 11222
Q ss_pred HHhh------ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeec-ccC
Q 014354 226 ILYK------TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSS-VSG 298 (426)
Q Consensus 226 ~l~~------~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA-~~g 298 (426)
.+.. .++|+|||+||+|+....... ......+. + . + ..+++++|| ++|
T Consensus 116 ~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~--------------~-------~-~-~~~~~e~Sa~~~g 170 (187)
T 3c5c_A 116 LLALHAKETQRSIPALLLGNKLDMAQYRQVT--KAEGVALA--------------G-------R-F-GCLFFEVSACLDF 170 (187)
T ss_dssp HHHHHHHHHCCCCCEEEEEECGGGGGGCSSC--HHHHHHHH--------------H-------H-H-TCEEEECCSSSCS
T ss_pred HHHHHhhccCCCCCEEEEEECcchhhcCccC--HHHHHHHH--------------H-------H-c-CCcEEEEeecCcc
Confidence 2221 489999999999986532210 01111111 0 1 1 247999999 899
Q ss_pred CCHHHHHHHHHHHHH
Q 014354 299 AGIEAYFKAVEESAQ 313 (426)
Q Consensus 299 ~gv~~l~~~l~~~~~ 313 (426)
.|+.++++.|.+.+.
T Consensus 171 ~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 171 EHVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHh
Confidence 999999999987653
No 147
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.65 E-value=1.1e-16 Score=145.46 Aligned_cols=114 Identities=19% Similarity=0.120 Sum_probs=60.5
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh------ccCCeEEEE
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK------TRLPLVLAF 238 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~------~~~P~IlVl 238 (426)
...+.||||||+.++. .+... ....+|++++|+|+....+ +.. ...++..+.. .++|++||+
T Consensus 72 ~~~~~l~Dt~G~~~~~-------~~~~~-~~~~~d~~i~v~d~~~~~s---~~~-~~~~~~~i~~~~~~~~~~~piilv~ 139 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYK-------EQISQ-YWNGVYYAILVFDVSSMES---FES-CKAWFELLKSARPDRERPLRAVLVA 139 (208)
T ss_dssp EEEEEEEETTTTHHHH-------HHHST-TCCCCCEEEEEEETTCHHH---HHH-HHHHHHHHHHHCSCTTSCCEEEEEE
T ss_pred EEEEEEEECCCcHHHH-------HHHHH-HHhhCcEEEEEEECCCHHH---HHH-HHHHHHHHHHhhcccccCCcEEEEE
Confidence 3578999999996541 11110 1134799999999975432 111 1122222222 578999999
Q ss_pred ecCCCCC-hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeeccc-CCCHHHHHHHHHHHHHHH
Q 014354 239 NKTDVAQ-HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS-GAGIEAYFKAVEESAQEF 315 (426)
Q Consensus 239 NKiDl~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~-g~gv~~l~~~l~~~~~~~ 315 (426)
||+|+.. ..... ......+.. . + ..+++++||++ |.|+.+++++|.+.+.+.
T Consensus 140 nK~Dl~~~~~~v~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 140 NKTDLPPQRHQVR--LDMAQDWAT---------------------T-N-TLDFFDVSANPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp ECC-------CCC--HHHHHHHHH---------------------H-T-TCEEEECCC-------CHHHHHHHHHHHHH
T ss_pred ECcccchhhccCC--HHHHHHHHH---------------------H-c-CCEEEEeccCCCCcCHHHHHHHHHHHHHHH
Confidence 9999976 32210 011111110 1 1 25799999999 999999999999877653
No 148
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.65 E-value=1.1e-16 Score=166.39 Aligned_cols=166 Identities=17% Similarity=0.178 Sum_probs=99.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+|+|.+|||||||+|+|++..+.. ..| |..+.. +.+.
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~--------------~~~-T~~~~~-------------------~~~~--- 362 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT--------------TIP-TVGFNV-------------------ETVT--- 362 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC--------------CCC-CSSEEE-------------------EEEE---
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC--------------cCC-ccceeE-------------------EEEE---
Confidence 456799999999999999999999876321 111 110000 0000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
.++..+.||||||+..+.... ... ...+|++|+|+|+........ .......+
T Consensus 363 ----------------~~~~~~~l~Dt~G~~~~~~~~------~~~--~~~ad~~i~V~D~~~~~s~~~---~~~~~~~~ 415 (497)
T 3lvq_E 363 ----------------YKNVKFNVWDVGGQDKIRPLW------RHY--YTGTQGLIFVVDCADRDRIDE---ARQELHRI 415 (497)
T ss_dssp ----------------SSSCEEEEEEECCCGGGSGGG------GGG--GTTCCEEEEEEETTCGGGHHH---HHHHHHHH
T ss_pred ----------------eCCEEEEEEECCCcHHHHHHH------HHH--hccCCEEEEEEECcchhHHHH---HHHHHHHH
Confidence 244789999999987752110 011 134799999999976432211 11112222
Q ss_pred Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
+. ..++|+|||+||+|+........+...+ +... ......+++++||++|.||++
T Consensus 416 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~---------------------~~~~-~~~~~~~~~~~SA~~g~gi~~ 473 (497)
T 3lvq_E 416 INDREMRDAIILIFANKQDLPDAMKPHEIQEKL---------------------GLTR-IRDRNWYVQPSCATSGDGLYE 473 (497)
T ss_dssp HTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHT---------------------TCTT-CCSSCEEEEECBTTTTBTHHH
T ss_pred hhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHh---------------------chhh-hhcCCeEEEEEECCCCCCHHH
Confidence 22 2479999999999997643222221111 0000 011234699999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 014354 304 YFKAVEESAQEFMET 318 (426)
Q Consensus 304 l~~~l~~~~~~~~~~ 318 (426)
++++|.+.+......
T Consensus 474 l~~~l~~~~~~~~~~ 488 (497)
T 3lvq_E 474 GLTWLTSNYKSKLAA 488 (497)
T ss_dssp HHHHHHHHCC-----
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999876654443
No 149
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.65 E-value=4.4e-16 Score=157.85 Aligned_cols=106 Identities=16% Similarity=0.162 Sum_probs=67.3
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC-eEEEEecCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTD 242 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P-~IlVlNKiD 242 (426)
.+..+.||||||+.++. ..+...+ ..+|++|+|+|+..+...++ ...+..+...++| +|+|+||+|
T Consensus 73 ~~~~~~iiDtpG~~~f~------~~~~~~~--~~aD~~ilVvda~~g~~~qt-----~~~l~~~~~~~ip~iivviNK~D 139 (405)
T 2c78_A 73 AKRHYSHVDCPGHADYI------KNMITGA--AQMDGAILVVSAADGPMPQT-----REHILLARQVGVPYIVVFMNKVD 139 (405)
T ss_dssp SSCEEEEEECCCSGGGH------HHHHHHH--TTCSSEEEEEETTTCCCHHH-----HHHHHHHHHTTCCCEEEEEECGG
T ss_pred CCeEEEEEECCChHHHH------HHHHHHH--HHCCEEEEEEECCCCCcHHH-----HHHHHHHHHcCCCEEEEEEECcc
Confidence 34789999999998752 2222222 45799999999998776544 2334445567899 789999999
Q ss_pred CCCh-HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCCCH
Q 014354 243 VAQH-EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGI 301 (426)
Q Consensus 243 l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~gv 301 (426)
+... .....+...+..+... ++ + ....+++++||++|.|+
T Consensus 140 l~~~~~~~~~~~~~~~~~l~~--------------~~-----~~~~~~~~i~~SA~~g~~v 181 (405)
T 2c78_A 140 MVDDPELLDLVEMEVRDLLNQ--------------YE-----FPGDEVPVIRGSALLALEQ 181 (405)
T ss_dssp GCCCHHHHHHHHHHHHHHHHH--------------TT-----SCTTTSCEEECCHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHH--------------hc-----ccccCCCEEEccHHHhhhh
Confidence 9853 2222222223222211 00 0 02368999999999873
No 150
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.65 E-value=1.5e-16 Score=145.98 Aligned_cols=175 Identities=15% Similarity=0.160 Sum_probs=96.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
....+|+|+|.+|||||||+++|++..+..... |.+. ..++. .+...
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~-------~t~~-~~~~~-----------------------~~~~~-- 72 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYV-------PTVF-ENYTA-----------------------SFEID-- 72 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC-------CCSE-EEEEE-----------------------EEESS--
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC-------Cccc-eeEEE-----------------------EEEEC--
Confidence 355799999999999999999999876542111 1000 00000 00000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
.....+.||||||+..+..... . ....++++|+|+|+....+ +......+...
T Consensus 73 ----------------~~~~~l~i~Dt~G~~~~~~~~~-------~-~~~~~d~~ilv~D~~~~~s---~~~~~~~~~~~ 125 (205)
T 1gwn_A 73 ----------------TQRIELSLWDTSGSPYYDNVRP-------L-SYPDSDAVLICFDISRPET---LDSVLKKWKGE 125 (205)
T ss_dssp ----------------SSEEEEEEEEECCSGGGTTTGG-------G-GCTTCSEEEEEEETTCHHH---HHHHHHTHHHH
T ss_pred ----------------CEEEEEEEEeCCCcHhhhHHHH-------h-hccCCCEEEEEEECCCHHH---HHHHHHHHHHH
Confidence 1235789999999876521110 0 1134799999999975322 21110111122
Q ss_pred Hhh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecc-cCCCHHH
Q 014354 227 LYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV-SGAGIEA 303 (426)
Q Consensus 227 l~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~-~g~gv~~ 303 (426)
+.. .++|+|||+||+|+........ .+. .. . ...+....+..+...++..+++++||+ +|.|+.+
T Consensus 126 i~~~~~~~piilv~nK~Dl~~~~~~~~---~~~---~~---~---~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~ 193 (205)
T 1gwn_A 126 IQEFCPNTKMLLVGCKSDLRTDVSTLV---ELS---NH---R---QTPVSYDQGANMAKQIGAATYIECSALQSENSVRD 193 (205)
T ss_dssp HHHHCTTCEEEEEEECGGGGGCHHHHH---HHH---TT---T---CCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHH
T ss_pred HHHHCCCCCEEEEEechhhccchhhhh---hhc---cc---c---cCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHH
Confidence 222 4789999999999975321100 000 00 0 000000001111111234579999999 6899999
Q ss_pred HHHHHHHHHH
Q 014354 304 YFKAVEESAQ 313 (426)
Q Consensus 304 l~~~l~~~~~ 313 (426)
++..|.+.+.
T Consensus 194 lf~~l~~~~l 203 (205)
T 1gwn_A 194 IFHVATLACV 203 (205)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 151
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=4.1e-16 Score=144.20 Aligned_cols=164 Identities=12% Similarity=0.148 Sum_probs=91.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
....+|+|+|.+|||||||+|++++..... +...+. +..+.... .+..
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~------------~~~~~~-~g~d~~~~----------------~i~~--- 82 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSM------------DSDCEV-LGEDTYER----------------TLMV--- 82 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTT------------CCC----CCTTEEEE----------------EEEE---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC------------CCcCCc-cceeeEEE----------------EEEE---
Confidence 345789999999999999999999754321 111111 10000000 0000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
. .....+++|||+|+... ...+... ....++++|+|.|.... ..|... ..+...
T Consensus 83 --~-------------~~~~~l~~~Dt~g~~~~------~~~l~~~-~~~~a~~~ilVydvt~~---~sf~~~-~~~~~~ 136 (211)
T 2g3y_A 83 --D-------------GESATIILLDMWENKGE------NEWLHDH-CMQVGDAYLIVYSITDR---ASFEKA-SELRIQ 136 (211)
T ss_dssp --T-------------TEEEEEEEECCTTTTHH------HHHHHHC-CCCCCSEEEEEEETTCH---HHHHHH-HHHHHH
T ss_pred --C-------------CeeeEEEEeecCCCcch------hhhHHHH-HHhhCCEEEEEEECCCH---HHHHHH-HHHHHH
Confidence 0 12356789999998552 0112111 11346788888887542 122111 111122
Q ss_pred Hh----hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354 227 LY----KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 227 l~----~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~ 302 (426)
+. ..++|+|||+||+|+.....+.. .....+ + ..+ ..+++++||++|.||.
T Consensus 137 l~~~~~~~~~piilVgNK~DL~~~r~v~~--~e~~~~------------------a----~~~-~~~~~e~SAk~g~~v~ 191 (211)
T 2g3y_A 137 LRRARQTEDIPIILVGNKSDLVRCREVSV--SEGRAC------------------A----VVF-DCKFIETSAAVQHNVK 191 (211)
T ss_dssp HHTSGGGTTSCEEEEEECTTCGGGCCSCH--HHHHHH------------------H----HHH-TCEEEECBTTTTBSHH
T ss_pred HHHHhCCCCCcEEEEEEChHHhcCceEeH--HHHHHH------------------H----HHc-CCEEEEEeCCCCCCHH
Confidence 22 23789999999999975322110 000000 0 011 2579999999999999
Q ss_pred HHHHHHHHHHH
Q 014354 303 AYFKAVEESAQ 313 (426)
Q Consensus 303 ~l~~~l~~~~~ 313 (426)
++|++|.+.+.
T Consensus 192 elf~~l~~~i~ 202 (211)
T 2g3y_A 192 ELFEGIVRQVR 202 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 152
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.9e-16 Score=145.53 Aligned_cols=162 Identities=17% Similarity=0.192 Sum_probs=92.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
...+|+|+|.+|||||||+++|++..+..... |.+.. .+.. . .+..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-------~t~~~-~~~~----~------------------~~~~---- 57 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK-------STIGV-EFAT----R------------------TLEI---- 57 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC-------------CC-SEEE----E------------------EEEE----
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCC-------Ccccc-eeEE----E------------------EEEE----
Confidence 45789999999999999999999876542111 00000 0000 0 0000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
......+.||||||+.++..... .. ...+|++|+|+|+........ ...++..+
T Consensus 58 --------------~~~~~~~~i~Dt~G~~~~~~~~~------~~--~~~~d~vilV~D~~~~~s~~~----~~~~l~~i 111 (223)
T 3cpj_B 58 --------------EGKRIKAQIWDTAGQERYRAITS------AY--YRGAVGALIVYDISKSSSYEN----CNHWLSEL 111 (223)
T ss_dssp --------------TTEEEEEEEECCTTTTTTTCCCG------GG--TTTCCEEEEEEC-CCHHHHHH----HHHHHHHH
T ss_pred --------------CCEEEEEEEEECCCccchhhhHH------HH--hccCCEEEEEEeCCCHHHHHH----HHHHHHHH
Confidence 01225789999999876521110 00 134799999999875432211 11122222
Q ss_pred h---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 228 ~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
. ..++|++||+||+|+....... ......+.. . ...+++++||++|.||.++
T Consensus 112 ~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l 166 (223)
T 3cpj_B 112 RENADDNVAVGLIGNKSDLAHLRAVP--TEESKTFAQ---------------------E--NQLLFTETSALNSENVDKA 166 (223)
T ss_dssp HHHCC--CEEEEEECCGGGGGGCCSC--HHHHHHHHH---------------------H--TTCEEEECCCC-CCCHHHH
T ss_pred HHhCCCCCeEEEEEECcccccccccC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHH
Confidence 2 3478999999999987542210 001111100 1 1357999999999999999
Q ss_pred HHHHHHHHHH
Q 014354 305 FKAVEESAQE 314 (426)
Q Consensus 305 ~~~l~~~~~~ 314 (426)
+.+|.+.+..
T Consensus 167 ~~~l~~~i~~ 176 (223)
T 3cpj_B 167 FEELINTIYQ 176 (223)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 153
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.65 E-value=3.4e-16 Score=163.57 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=52.5
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl 243 (426)
.+..+.||||||+.++. ......+ ..+|++|+|+|+..+...++ ...+..+...++|+|+|+||+|+
T Consensus 80 ~~~~i~liDTPG~~df~------~~~~~~l--~~aD~allVvDa~~g~~~~t-----~~~~~~~~~~~iPiivviNK~Dl 146 (528)
T 3tr5_A 80 KDYLINLLDTPGHADFT------EDTYRTL--TAVDSALMVIDAAKGVEPRT-----IKLMEVCRLRHTPIMTFINKMDR 146 (528)
T ss_dssp TTEEEEEECCCCSTTCC------HHHHHGG--GGCSEEEEEEETTTCSCHHH-----HHHHHHHHTTTCCEEEEEECTTS
T ss_pred CCEEEEEEECCCchhHH------HHHHHHH--HhCCEEEEEEeCCCCCCHHH-----HHHHHHHHHcCCCEEEEEeCCCC
Confidence 45789999999998863 1122222 34799999999999877655 33445566778999999999999
Q ss_pred CChH
Q 014354 244 AQHE 247 (426)
Q Consensus 244 ~~~~ 247 (426)
....
T Consensus 147 ~~~~ 150 (528)
T 3tr5_A 147 DTRP 150 (528)
T ss_dssp CCSC
T ss_pred cccc
Confidence 7643
No 154
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.65 E-value=7.5e-16 Score=155.77 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=74.7
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC-eEEEEecCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTD 242 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P-~IlVlNKiD 242 (426)
.+..+.||||||+.++. ..+... ...+|++|+|+|+..+...++. ..+..+...++| +|+|+||+|
T Consensus 64 ~~~~~~iiDtpG~~~f~------~~~~~~--~~~aD~~ilVvda~~g~~~qt~-----e~l~~~~~~~vp~iivviNK~D 130 (397)
T 1d2e_A 64 AARHYAHTDCPGHADYV------KNMITG--TAPLDGCILVVAANDGPMPQTR-----EHLLLARQIGVEHVVVYVNKAD 130 (397)
T ss_dssp SSCEEEEEECSSHHHHH------HHHHHT--SSCCSEEEEEEETTTCSCHHHH-----HHHHHHHHTTCCCEEEEEECGG
T ss_pred CCeEEEEEECCChHHHH------HHHHhh--HhhCCEEEEEEECCCCCCHHHH-----HHHHHHHHcCCCeEEEEEECcc
Confidence 34789999999997641 111111 2458999999999988766542 233445567899 579999999
Q ss_pred CCChH-hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCCC----------HHHHHHHHHH
Q 014354 243 VAQHE-FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAG----------IEAYFKAVEE 310 (426)
Q Consensus 243 l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~g----------v~~l~~~l~~ 310 (426)
+.... ....+...+..+... + .+ ....+++++||++|.| +.+|+++|..
T Consensus 131 l~~~~~~~~~~~~~~~~~l~~--------------~-----~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~ 191 (397)
T 1d2e_A 131 AVQDSEMVELVELEIRELLTE--------------F-----GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT 191 (397)
T ss_dssp GCSCHHHHHHHHHHHHHHHHH--------------T-----TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHH--------------c-----CCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHH
Confidence 98532 222222233322211 0 01 0136899999999774 7777777766
Q ss_pred HHH
Q 014354 311 SAQ 313 (426)
Q Consensus 311 ~~~ 313 (426)
.++
T Consensus 192 ~~p 194 (397)
T 1d2e_A 192 YIP 194 (397)
T ss_dssp HSC
T ss_pred hCC
Confidence 554
No 155
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.64 E-value=5e-16 Score=155.25 Aligned_cols=159 Identities=15% Similarity=0.170 Sum_probs=94.6
Q ss_pred cChhhhHHHHHHhhhhccccc----ccCc--CCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354 33 ANDKEKEEITESMDKLHIEES----SSGL--AGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (426)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d 106 (426)
++.+....|+..+.+++.+-. .... ..............|+|+|+||||||||+|+|++...
T Consensus 30 ~Te~~~~~lk~kla~lr~el~~~~~~~~~~~~~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~------------ 97 (376)
T 4a9a_A 30 ATSFHLGQLKAKLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTES------------ 97 (376)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHCC-------CCSBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCC------------
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCceEeecCCCeEEEECCCCCCHHHHHHHHhCCCC------------
Confidence 344555667777776654311 1111 1112223344557899999999999999999999762
Q ss_pred ccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccch-hch
Q 014354 107 PAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SAS 185 (426)
Q Consensus 107 ~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~-~~~ 185 (426)
.+.++|++| ++ |+-|++. ..+.+++|+||||+.+.... ..+
T Consensus 98 -~v~~~pftT----~~--------------~~~g~~~-------------------~~~~~i~l~D~pGl~~~a~~~~~~ 139 (376)
T 4a9a_A 98 -EAAEYEFTT----LV--------------TVPGVIR-------------------YKGAKIQMLDLPGIIDGAKDGRGR 139 (376)
T ss_dssp -CGGGTCSSC----CC--------------EEEEEEE-------------------ETTEEEEEEECGGGCCC-----CH
T ss_pred -cccCCCCce----ee--------------eeeEEEE-------------------eCCcEEEEEeCCCccCCchhhhHH
Confidence 378889888 22 2345444 25578999999999875221 123
Q ss_pred HHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354 186 GAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 186 ~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
+..+.... ..+|++++|||++............+.... +.-...|.++++||+|..
T Consensus 140 g~~~l~~i--~~ad~il~vvD~~~p~~~~~~i~~EL~~~~-~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 140 GKQVIAVA--RTCNLLFIILDVNKPLHHKQIIEKELEGVG-IRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHHH--HHCSEEEEEEETTSHHHHHHHHHHHHHHTT-EEETCCCCCEEEEECSSS
T ss_pred HHHHHHHH--HhcCccccccccCccHHHHHHHHHHHHHhh-HhhccCChhhhhhHhhhh
Confidence 33333333 347999999999754332222211111110 112467899999999974
No 156
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.64 E-value=7.7e-16 Score=157.46 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC-eEEEEecCCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDV 243 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P-~IlVlNKiDl 243 (426)
+..+.||||||+.++. ..+...+ ..+|++|+|+|+..+...++. ..+..+...+.| +|+|+||+|+
T Consensus 103 ~~~~~iiDtpGh~~f~------~~~~~~~--~~aD~~ilVvDa~~g~~~qt~-----~~l~~~~~~~~~~iIvviNK~Dl 169 (434)
T 1zun_B 103 KRKFIIADTPGHEQYT------RNMATGA--STCDLAIILVDARYGVQTQTR-----RHSYIASLLGIKHIVVAINKMDL 169 (434)
T ss_dssp SEEEEEEECCCSGGGH------HHHHHHH--TTCSEEEEEEETTTCSCHHHH-----HHHHHHHHTTCCEEEEEEECTTT
T ss_pred CceEEEEECCChHHHH------HHHHHHH--hhCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCeEEEEEEcCcC
Confidence 4679999999998752 2222222 568999999999988765442 223334455664 8999999999
Q ss_pred CCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354 244 AQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 244 ~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
... +....+...+..+... ++. .....+++++||++|.|+.+++.
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~--------------~g~----~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 170 NGFDERVFESIKADYLKFAEG--------------IAF----KPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp TTSCHHHHHHHHHHHHHHHHT--------------TTC----CCSEEEEEECCTTTCTTTSSCCT
T ss_pred CcccHHHHHHHHHHHHHHHHH--------------hCC----CccCceEEEEeccCCCCcccccc
Confidence 863 2222233333322111 000 01236799999999999988643
No 157
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.64 E-value=3.2e-16 Score=153.22 Aligned_cols=175 Identities=14% Similarity=0.122 Sum_probs=98.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
....+|+++|.+|||||||++++++..+.... ..++..... ..+.
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~--------------~~t~~~~~~------------------~~~~--- 197 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEY--------------IPTVFDNYS------------------ANVM--- 197 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSC--------------CCCSEEEEE------------------EEEE---
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCccc--------------CCcccceeE------------------EEEE---
Confidence 35688999999999999999999987543211 111100000 0000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
. ....+.+.||||||+..+..... . ....+|++++|+|+....+..... ..+...
T Consensus 198 --~------------~~~~~~~~l~Dt~G~~~~~~~~~-------~-~~~~~d~~i~v~d~~~~~s~~~~~---~~~~~~ 252 (332)
T 2wkq_A 198 --V------------DGKPVNLGLWDTAGLEDYDRLRP-------L-SYPQTDVFLICFSLVSPASFHHVR---AKWYPE 252 (332)
T ss_dssp --E------------TTEEEEEEEEEECCCGGGTTTGG-------G-GCTTCSEEEEEEETTCHHHHHHHH---HTHHHH
T ss_pred --E------------CCEEEEEEEEeCCCchhhhHHHH-------H-hccCCCEEEEEEeCCCHHHHHHHH---HHHHHH
Confidence 0 01235677999999977521110 0 113479999999997643221111 011122
Q ss_pred Hhh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 227 LYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 227 l~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
+.. .++|+|+|+||+|+.............. ...+....+..+...++..+++++||++|.|+.++
T Consensus 253 ~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 320 (332)
T 2wkq_A 253 VRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK------------LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 320 (332)
T ss_dssp HHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTT------------CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred HHhhCCCCcEEEEEEchhcccccchhhhccccc------------cccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHH
Confidence 222 2899999999999876432211111000 00000011111112233347999999999999999
Q ss_pred HHHHHHHHH
Q 014354 305 FKAVEESAQ 313 (426)
Q Consensus 305 ~~~l~~~~~ 313 (426)
+++|.+.+.
T Consensus 321 ~~~l~~~~~ 329 (332)
T 2wkq_A 321 FDEAIRAVL 329 (332)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987654
No 158
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.2e-15 Score=162.03 Aligned_cols=110 Identities=19% Similarity=0.265 Sum_probs=67.3
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCC-------CchhhhhhHHHHHHHHhhccCC-eE
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-------NPMTFMSNMLYACSILYKTRLP-LV 235 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~-------~~~~~~~~~l~~~~~l~~~~~P-~I 235 (426)
.+.++.||||||+.++. ..+.. ....+|++|+|||+..+. ..++ ...+..+...++| +|
T Consensus 243 ~~~~~~iiDTPG~e~f~------~~~~~--~~~~aD~~llVVDa~~g~~e~~~~~~~qt-----~e~l~~~~~lgi~~iI 309 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFV------PNAIM--GISQADMAILCVDCSTNAFESGFDLDGQT-----KEHMLLASSLGIHNLI 309 (611)
T ss_dssp SSCEEEEEECCSSSCHH------HHHTT--TSSCCSEEEEEEECSHHHHHTTCCTTSHH-----HHHHHHHHTTTCCEEE
T ss_pred CCceEEEEECCCCcccH------HHHHH--HHhhcCceEEEEECCCCcccccchhhhHH-----HHHHHHHHHcCCCeEE
Confidence 45689999999997741 11111 124589999999998752 2222 2333445556655 89
Q ss_pred EEEecCCCCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 236 LAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 236 lVlNKiDl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
||+||+|+... .....+...+..+... ++. .....++|++||++|.|+.++
T Consensus 310 VVvNKiDl~~~~~~~~~ei~~~l~~~l~~--------------~g~----~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 310 IAMNKMDNVDWSQQRFEEIKSKLLPYLVD--------------IGF----FEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEEECTTTTTTCHHHHHHHHHHHHHHHHH--------------HTC----CGGGCEEEECCTTTCTTTSSC
T ss_pred EEEecccccchhHHHHHHHHHHHHHHHHh--------------hcc----cccCccEEeeecccCCCcccc
Confidence 99999999873 2222233333222211 110 012468999999999999866
No 159
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.63 E-value=1.7e-16 Score=168.16 Aligned_cols=108 Identities=22% Similarity=0.278 Sum_probs=60.4
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCC-------CchhhhhhHHHHHHHHhhccCC-eE
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-------NPMTFMSNMLYACSILYKTRLP-LV 235 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~-------~~~~~~~~~l~~~~~l~~~~~P-~I 235 (426)
.+..+.||||||+.++......+. ..+|++|+|||+..+. ..++ ...+..+...++| +|
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~--------~~aD~alLVVDa~~g~~e~gi~~~~qt-----~e~l~~~~~lgip~iI 319 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGA--------SSADFAVLVVDSSQNNFERGFLENGQT-----REHAYLLRALGISEIV 319 (592)
T ss_dssp ------CCEEESSSEEEEECCC---------------CCSEEEEEECCSSTTSCSCSSH-----HHHHHHHHHSSCCCEE
T ss_pred CCeEEEEEECCChHHHHHHHHHHH--------hhCCEEEEEEECCCCccccccccchHH-----HHHHHHHHHcCCCeEE
Confidence 346899999999988743222221 3469999999998754 3333 3344455667887 88
Q ss_pred EEEecCCCCC--hHhHHHHHHHHHHHH-HHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354 236 LAFNKTDVAQ--HEFALEWMQDFEVFQ-AAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302 (426)
Q Consensus 236 lVlNKiDl~~--~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~ 302 (426)
+|+||+|+.. ......+...+..+. .. ++. ....+++|++||++|.|+.
T Consensus 320 vviNKiDl~~~~~~~~~~i~~el~~~l~~~--------------~g~----~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 320 VSVNKLDLMSWSEDRFQEIKNIVSDFLIKM--------------VGF----KTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp EEEECGGGGTTCHHHHHHHHHHHHHHHTTT--------------SCC----CGGGEEEEEECSSSCSSSC
T ss_pred EEEeccccccccHHHHHHHHHHHHHHHHHh--------------hCC----CccceEEEEEecccCcccc
Confidence 8999999986 333333333333211 00 000 0123579999999999998
No 160
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.62 E-value=1.4e-15 Score=160.60 Aligned_cols=112 Identities=18% Similarity=0.248 Sum_probs=77.2
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~ 245 (426)
+.+.||||||+.++. ..+...+ ..+|.+|+|||+..+...++. ..+..+...++|.|+|+||+|+..
T Consensus 73 ~~inliDTPGh~dF~------~ev~r~l--~~aD~aILVVDa~~gv~~qt~-----~~~~~a~~~~ipiIvviNKiDl~~ 139 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFS------YEVSRAL--AACEGALLLIDASQGIEAQTV-----ANFWKAVEQDLVIIPVINKIDLPS 139 (600)
T ss_dssp EEEEEECCCCSGGGH------HHHHHHH--HTCSEEEEEEETTTBCCHHHH-----HHHHHHHHTTCEEEEEEECTTSTT
T ss_pred EEEEEEECCCcHhHH------HHHHHHH--HhCCEEEEEEECCCCccHHHH-----HHHHHHHHCCCCEEEEEeccCccc
Confidence 578899999998862 2222333 347999999999998876652 233344567899999999999986
Q ss_pred hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
.. ..+..+.+. .. ++ ....+++++||++|.|+.+|+++|.+.++.
T Consensus 140 a~-~~~v~~el~---~~--------------lg------~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 140 AD-VDRVKKQIE---EV--------------LG------LDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp CC-HHHHHHHHH---HT--------------SC------CCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cC-HHHHHHHHH---Hh--------------hC------CCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 43 112222221 11 00 111358999999999999999999887764
No 161
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.61 E-value=7.4e-15 Score=134.99 Aligned_cols=184 Identities=16% Similarity=0.199 Sum_probs=96.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+.++|+|+|++|||||||+++|++..+.. .+.....+. ...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~-----------~~~~~~~~~-------------------------~~~-- 51 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-----------TVVSQEPLS-------------------------AAD-- 51 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCC-----------BCCCSSCEE-------------------------ETT--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC-----------eeeecCceE-------------------------EEE--
Confidence 456789999999999999999999876431 011111011 000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh--cCCcEEEEEEeCC-CCCCchhhhhhHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTP-RSANPMTFMSNMLYA 223 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~--~~~d~vl~VVDa~-~~~~~~~~~~~~l~~ 223 (426)
.....+.||||||+..+. ..+...+.. ..++++|+|+|+. ..............+
T Consensus 52 ----------------~~~~~~~l~Dt~G~~~~~------~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~ 109 (218)
T 1nrj_B 52 ----------------YDGSGVTLVDFPGHVKLR------YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDI 109 (218)
T ss_dssp ----------------GGGSSCEEEECCCCGGGT------HHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHH
T ss_pred ----------------eeCceEEEEECCCcHHHH------HHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHH
Confidence 023689999999997752 112222222 2368999999998 222211111111111
Q ss_pred HHHH---hhccCCeEEEEecCCCCChHhHHHHHHHHH----HHHHH-----hc-----cc----cchhhhHHHHhhhhHh
Q 014354 224 CSIL---YKTRLPLVLAFNKTDVAQHEFALEWMQDFE----VFQAA-----IS-----SD----HSYTSTLTNSLSLALD 282 (426)
Q Consensus 224 ~~~l---~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~----~l~~~-----~~-----~~----~~~~~~~~~~~~~~l~ 282 (426)
+... ...++|++||+||+|+........+...+. .+... +. .. ..+...+.+.....+.
T Consensus 110 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~l~~~~~f~~~ 189 (218)
T 1nrj_B 110 LSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKFA 189 (218)
T ss_dssp HHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CTTC----CCCGG
T ss_pred HhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccchhhhcccccCCCCcccc
Confidence 1111 225899999999999987644332322222 11110 00 00 0011111122222222
Q ss_pred hhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354 283 EFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (426)
Q Consensus 283 ~~~~~~~vv~vSA~~g~gv~~l~~~l~~~ 311 (426)
.++..+.++..|+..+ ++.++++++.+.
T Consensus 190 ~~~~~v~~~~~s~~~~-~i~~~~~~~~~~ 217 (218)
T 1nrj_B 190 NLEASVVAFEGSINKR-KISQWREWIDEK 217 (218)
T ss_dssp GSSSCEEEEECBTTTT-BCHHHHHHHHHH
T ss_pred ccCCceEEEeccccCC-cHHHHHHHHHhh
Confidence 3344456777777776 588888887654
No 162
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.61 E-value=9.6e-15 Score=133.33 Aligned_cols=175 Identities=11% Similarity=0.070 Sum_probs=99.8
Q ss_pred CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc
Q 014354 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT 143 (426)
Q Consensus 64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~ 143 (426)
....++.+|+|+|++|||||||+|+|++..... .+...++++.. .+.+.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~-----------~~~~~~G~~~~--------------------~~~~~ 69 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLA-----------RTSKTPGRTQL--------------------INLFE 69 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC------------------------CC--------------------EEEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccc-----------cccCCCcccee--------------------eEEEE
Confidence 445677899999999999999999999875211 01111111100 00000
Q ss_pred ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccch----hchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhh
Q 014354 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW----SASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMS 218 (426)
Q Consensus 144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~----~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~ 218 (426)
.. ..+.+|||||+...... ......+...+.. ..++.+++|+|+........
T Consensus 70 -------------------~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--- 126 (210)
T 1pui_A 70 -------------------VA-DGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLD--- 126 (210)
T ss_dssp -------------------EE-TTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH---
T ss_pred -------------------ec-CCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhH---
Confidence 01 26789999998642100 0111222233322 34688999999987654322
Q ss_pred hHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccC
Q 014354 219 NMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG 298 (426)
Q Consensus 219 ~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g 298 (426)
..+...+...++|.++|+||+|+.+..........+..+. ........++++||+++
T Consensus 127 --~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~Sal~~ 183 (210)
T 1pui_A 127 --QQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAV---------------------LAFNGDVQVETFSSLKK 183 (210)
T ss_dssp --HHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHH---------------------GGGCSCEEEEECBTTTT
T ss_pred --HHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHH---------------------HhcCCCCceEEEeecCC
Confidence 1122334567899999999999988653322112222111 11112356899999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 014354 299 AGIEAYFKAVEESAQEF 315 (426)
Q Consensus 299 ~gv~~l~~~l~~~~~~~ 315 (426)
.|+.+++++|.+...+.
T Consensus 184 ~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 184 QGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp BSHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHhhc
Confidence 99999999998876553
No 163
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.61 E-value=4.3e-14 Score=152.39 Aligned_cols=123 Identities=12% Similarity=0.147 Sum_probs=75.1
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~ 245 (426)
..+.||||||+.+... .......++ ..+|++|||+|+.......+. ..+...+...+.|+++|+||+|+..
T Consensus 174 ~~l~LiDTPGl~~~~~---~~~~~~~~i--~~aD~vL~Vvda~~~~s~~e~----~~l~~~l~~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEA---RNELSLGYV--NNCHAILFVMRASQPCTLGER----RYLENYIKGRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHT---CHHHHTHHH--HSSSEEEEEEETTSTTCHHHH----HHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhh---HHHHHHHHH--HhCCEEEEEEeCCCccchhHH----HHHHHHHHhhCCCEEEEEECccccc
Confidence 4799999999876421 112222233 347999999999877655431 1112234456789999999999875
Q ss_pred hH--------hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhh-------cCCceEEeecc--------------
Q 014354 246 HE--------FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-------KNLKSVGVSSV-------------- 296 (426)
Q Consensus 246 ~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~vv~vSA~-------------- 296 (426)
.. .+......+.... ...+..+. ...++++|||+
T Consensus 245 ~~~~~~ee~e~l~~~~~~i~~~~-----------------~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~ 307 (695)
T 2j69_A 245 ESLIDPDDVEELQASENRLRQVF-----------------NANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADL 307 (695)
T ss_dssp GGCSSTTCHHHHHHHHHHHHHHH-----------------HHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCC
T ss_pred ccccChhhHHHHHHHHHHHHHHH-----------------HHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhh
Confidence 43 1111111111100 00011111 12479999999
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 014354 297 SGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 297 ~g~gv~~l~~~l~~~~~~ 314 (426)
+|.|+.+|+.+|...+..
T Consensus 308 ~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 308 DGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH
Confidence 999999999999887654
No 164
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.61 E-value=3.1e-15 Score=135.62 Aligned_cols=114 Identities=12% Similarity=0.074 Sum_probs=63.0
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh----hccCCeEEEEecC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY----KTRLPLVLAFNKT 241 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~----~~~~P~IlVlNKi 241 (426)
..+++|||+|+..... .+.. ..++ .++++++|.|..... .|... ..+...+. ..++|+|+|.||+
T Consensus 56 ~~l~~~Dt~~~~~~~~--~~~~---~~~~--~~~~~i~v~dv~~~~---s~~~~-~~~~~~l~~~~~~~~~piilV~NK~ 124 (192)
T 2cjw_A 56 ATIILLDMWENKGENE--WLHD---HCMQ--VGDAYLIVYSITDRA---SFEKA-SELRIQLRRARQTEDIPIILVGNKS 124 (192)
T ss_dssp EEEEEECCCCC----C--TTGG---GHHH--HCSEEEEEEETTCHH---HHHHH-HHHHHHHHHHTTTSCCCEEEEEECT
T ss_pred EEEEEEEeccCcchhh--hHHH---hhcc--cCCEEEEEEECCCHH---HHHHH-HHHHHHHHHhhCCCCCeEEEEEech
Confidence 5678999999865211 0100 0111 257777777775421 11111 11111121 2478999999999
Q ss_pred CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHH
Q 014354 242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF 315 (426)
Q Consensus 242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~ 315 (426)
|+....... ......+ + . ....+++++||++|.||.++|.+|.+.+...
T Consensus 125 Dl~~~r~v~--~~~~~~~------------------a----~-~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 125 DLVRXREVS--VSEGRAX------------------A----V-VFDXKFIETSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp TCGGGCCSC--HHHHHHH------------------H----H-HTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred hhhcccccc--HHHHHHH------------------H----H-HhCCceEEeccccCCCHHHHHHHHHHHHHhh
Confidence 986532210 0000000 0 0 1125789999999999999999999877543
No 165
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.61 E-value=2.2e-15 Score=159.30 Aligned_cols=113 Identities=18% Similarity=0.285 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
.+.+.||||||+.++. ..+...++ .+|.+|+|+|+..+...++. ..+..+...++|.|+|+||+|+.
T Consensus 70 ~~~l~liDTPGh~dF~------~ev~~~l~--~aD~aILVVDa~~gv~~qt~-----~~~~~~~~~~ipiIvViNKiDl~ 136 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFS------YEVSRSLA--ACEGALLVVDAGQGVEAQTL-----ANCYTAMEMDLEVVPVLNKIDLP 136 (599)
T ss_dssp EEEEEEEECCCCGGGH------HHHHHHHH--HCSEEEEEEETTTCCCTHHH-----HHHHHHHHTTCEEEEEEECTTST
T ss_pred eEEEEEEECCCchHHH------HHHHHHHH--HCCEEEEEEECCCCCCHHHH-----HHHHHHHHCCCCEEEeeeccCcc
Confidence 3678899999998862 22333332 36999999999998877653 23333456789999999999998
Q ss_pred ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
.... .+..+.+. .. ++ ....+++++||++|.|+.+|+++|.+.++.
T Consensus 137 ~a~~-~~v~~ei~---~~--------------lg------~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 137 AADP-ERVAEEIE---DI--------------VG------IDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp TCCH-HHHHHHHH---HH--------------TC------CCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred cccH-HHHHHHHH---HH--------------hC------CCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 6431 11222221 11 00 112368999999999999999999987764
No 166
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.61 E-value=3.5e-16 Score=164.35 Aligned_cols=163 Identities=16% Similarity=0.162 Sum_probs=84.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccC---C------ceEEEeccCccccccccccccchhhhHHHHHHHHHcCC-C
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR---N------IRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNL-G 136 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~---~------~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l-~ 136 (426)
...++|+|+|.+|||||||+|+|++..+.. + ....+...+... ..+..+.+ ......+.. +..++. -
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~-i~~g~~l~-~~~~~~~~~-L~~~g~~~ 139 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEG-TVPGNALV-VDPEKPFRK-LNPFGNTF 139 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSE-EECCC--------------------CC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCccc-ccCCceee-ecCcccHHH-Hhhhcccc
Confidence 356899999999999999999999987531 1 011111110000 00000000 000000000 111111 1
Q ss_pred CCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccch---hc--hHHHHHHHHHhcCCcEEEEEEeCCCC-
Q 014354 137 PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW---SA--SGAIITEAFASTFPTVVTYVVDTPRS- 210 (426)
Q Consensus 137 ~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~---~~--~~~~l~~~~~~~~~d~vl~VVDa~~~- 210 (426)
.++|+||++. ..+ . .+++||||||+.+.... .. ........+ ..+|++|+|+|+...
T Consensus 140 ~~~~~~~~~~---~~l------l------~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l--~~aD~il~VvDa~~~~ 202 (550)
T 2qpt_A 140 LNRFMCAQLP---NQV------L------ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFA--ERVDLIILLFDAHKLE 202 (550)
T ss_dssp CTTEEEEECC---CHH------H------HHCEEEECCCBCC-------CCSCHHHHHHHHH--HHCSEEEEEEETTSCC
T ss_pred cccceEEecc---ccc------c------CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHH--HhCCEEEEEEeCCcCC
Confidence 2466776532 110 0 26899999999763110 00 111122222 347999999999763
Q ss_pred CCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHH
Q 014354 211 ANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQ 254 (426)
Q Consensus 211 ~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~ 254 (426)
..... ..++..+...+.|+++|+||+|++....+.++..
T Consensus 203 ~~~~~-----~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~ 241 (550)
T 2qpt_A 203 ISDEF-----SEAIGALRGHEDKIRVVLNKADMVETQQLMRVYG 241 (550)
T ss_dssp CCHHH-----HHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHH
T ss_pred CCHHH-----HHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHH
Confidence 33322 2344556667889999999999998775544433
No 167
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.60 E-value=4.3e-16 Score=158.40 Aligned_cols=165 Identities=23% Similarity=0.251 Sum_probs=100.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
...++|+|+|++|+|||||+|+|++..+.. ++..++++ ++ . ....+.
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~------------~~~~~gtT-~d---~-----------------~~~~~~ 78 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSI------------VSDYAGTT-TD---P-----------------VYKSME 78 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC--------------------------CC---C-----------------CEEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCc------------cCCCCCee-ee---e-----------------EEEEEE
Confidence 456799999999999999999999876432 22222222 00 0 000000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhch-HHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSAS-GAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~-~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
. .....+.||||||+.++...... .......+ ..+|++|+|+|+ +..... ..++.
T Consensus 79 ~---------------~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l--~~aD~vllVvD~--~~~~~~-----~~~l~ 134 (423)
T 3qq5_A 79 L---------------HPIGPVTLVDTPGLDDVGELGRLRVEKARRVF--YRADCGILVTDS--APTPYE-----DDVVN 134 (423)
T ss_dssp E---------------TTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH--TSCSEEEEECSS--SCCHHH-----HHHHH
T ss_pred E---------------CCCCeEEEEECcCCCcccchhHHHHHHHHHHH--hcCCEEEEEEeC--CChHHH-----HHHHH
Confidence 0 11127899999999876322111 12222222 358999999998 333222 33445
Q ss_pred HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
.+...++|+|+|+||+|+...... +..+.+ ...+ ..+++++||++|.|+.+++
T Consensus 135 ~l~~~~~piIvV~NK~Dl~~~~~~-~~~~~l-------------------------~~~~-g~~v~~vSAktg~gI~eL~ 187 (423)
T 3qq5_A 135 LFKEMEIPFVVVVNKIDVLGEKAE-ELKGLY-------------------------ESRY-EAKVLLVSALQKKGFDDIG 187 (423)
T ss_dssp HHHHTTCCEEEECCCCTTTTCCCT-HHHHHS-------------------------SCCT-TCCCCCCSSCCTTSTTTHH
T ss_pred HHHhcCCCEEEEEeCcCCCCccHH-HHHHHH-------------------------HHHc-CCCEEEEECCCCCCHHHHH
Confidence 566779999999999999876532 111111 0112 3589999999999999999
Q ss_pred HHHHHHHHHH
Q 014354 306 KAVEESAQEF 315 (426)
Q Consensus 306 ~~l~~~~~~~ 315 (426)
++|.+.+++.
T Consensus 188 ~~L~~~l~~~ 197 (423)
T 3qq5_A 188 KTISEILPGD 197 (423)
T ss_dssp HHHHHHSCCC
T ss_pred HHHHHhhhhh
Confidence 9999988543
No 168
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.60 E-value=5.3e-15 Score=144.46 Aligned_cols=169 Identities=16% Similarity=0.117 Sum_probs=96.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
...+|+|+|.+|||||||+|++++..... ++..+.+| ++. ......
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~------------~~~~~~~T-i~~--------------------~~~~~~- 47 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAF------------DTRRLGAT-IDV--------------------EHSHLR- 47 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTG------------GGGGCCCC-CSE--------------------EEEEEE-
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc------------cccCcCCc-cce--------------------EEEEEE-
Confidence 34689999999999999999999874321 22223222 110 000000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHH-HHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII-TEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l-~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
..++..+.||||||+..+. ......+ ...+ ..+|++|+|+|+....+.... ......+..
T Consensus 48 --------------~~~~~~l~i~Dt~G~~~~~--~~~~~~~~~~~~--~~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~ 108 (307)
T 3r7w_A 48 --------------FLGNMTLNLWDCGGQDVFM--ENYFTKQKDHIF--QMVQVLIHVFDVESTEVLKDI-EIFAKALKQ 108 (307)
T ss_dssp --------------ETTTEEEEEEEECCSHHHH--HHHHTTTHHHHH--TTCSEEEEEEETTCSCHHHHH-HHHHHHHHH
T ss_pred --------------eCCceEEEEEECCCcHHHh--hhhhhhHHHHHh--ccCCEEEEEEECCChhhHHHH-HHHHHHHHH
Confidence 0134689999999997641 0000001 1111 357999999999765432211 011111222
Q ss_pred Hh--hccCCeEEEEecCCCCChHhHHHHH----HHHHHHHHHhccccchhhhHHHHhhhhHhhhhc--CCceEEeecccC
Q 014354 227 LY--KTRLPLVLAFNKTDVAQHEFALEWM----QDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK--NLKSVGVSSVSG 298 (426)
Q Consensus 227 l~--~~~~P~IlVlNKiDl~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~vv~vSA~~g 298 (426)
+. ..++|+++|+||+|+.......... .....+. ..++ ..+++++||++
T Consensus 109 l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~----------------------~~~g~~~~~~~~tSa~~- 165 (307)
T 3r7w_A 109 LRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETS----------------------SEFGFPNLIGFPTSIWD- 165 (307)
T ss_dssp HHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH----------------------HTTTCCSCEEEECCTTS-
T ss_pred HHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHH----------------------HHcCCCCeEEEEeeecC-
Confidence 22 2379999999999999854332111 1111111 1223 37899999999
Q ss_pred CCHHHHHHHHHHHH
Q 014354 299 AGIEAYFKAVEESA 312 (426)
Q Consensus 299 ~gv~~l~~~l~~~~ 312 (426)
.|+.+++..+...+
T Consensus 166 ~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 166 ESLYKAWSQIVCSL 179 (307)
T ss_dssp SHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHH
Confidence 78888887776643
No 169
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.59 E-value=3.6e-17 Score=148.75 Aligned_cols=161 Identities=14% Similarity=0.137 Sum_probs=87.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+|+|.+|||||||+|+|++..+... ..+..+ .+.. ...+..
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-------------~~~~~~-~~~~-----------------~~~~~~-- 77 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTES-------------YISTIG-VDFK-----------------IRTIEL-- 77 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCH-------------HHHHHC-CSEE-----------------EEEEEE--
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCC-------------cCCccc-ceEE-----------------EEEEEE--
Confidence 3467999999999999999999997654321 001000 0000 000000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
......+.||||||+.++...... . ...+|++++|+|+........ ...++..
T Consensus 78 ---------------~~~~~~~~i~Dt~G~~~~~~~~~~------~--~~~~d~~i~v~d~~~~~s~~~----~~~~~~~ 130 (199)
T 3l0i_B 78 ---------------DGKTIKLQIWDTAGQERFRTITSS------Y--YRGAHGIIVVYDVTDQESFNN----VKQWLQE 130 (199)
T ss_dssp ---------------TTEEEEEEEECCTTCTTCCCCSCC----------CCCSEEEECC-CCCSHHHHH----HHHHHHH
T ss_pred ---------------CCEEEEEEEEECCCcHhHHHHHHH------H--hhcCCEEEEEEECCCHHHHHH----HHHHHHH
Confidence 012257899999998775321111 0 134799999999976332111 1122222
Q ss_pred Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
+. ..++|+|||+||+|+........ ..... +. . ....+++++||++|.|+.+
T Consensus 131 i~~~~~~~~p~ilv~nK~Dl~~~~~v~~--~~~~~--------------~~--------~-~~~~~~~~vSA~~g~gv~~ 185 (199)
T 3l0i_B 131 IDRYASENVNKLLVGNKCDLTTKKVVDY--TTAKE--------------FA--------D-SLGIPFLETSAKNATNVEQ 185 (199)
T ss_dssp HHSCC-CCSEEEEC-CCSSCC--CCCCS--CC-CH--------------HH--------H-TTTCCBCCCCC---HHHHH
T ss_pred HHHhccCCCCEEEEEECccCCccccCCH--HHHHH--------------HH--------H-HcCCeEEEEECCCCCCHHH
Confidence 32 23789999999999975432100 00000 00 0 1135799999999999999
Q ss_pred HHHHHHHHH
Q 014354 304 YFKAVEESA 312 (426)
Q Consensus 304 l~~~l~~~~ 312 (426)
++++|.+.+
T Consensus 186 l~~~l~~~l 194 (199)
T 3l0i_B 186 SFMTMAAEI 194 (199)
T ss_dssp HHHHHTTTT
T ss_pred HHHHHHHHH
Confidence 999987654
No 170
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.59 E-value=3.6e-15 Score=156.55 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=85.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+.+.|+|+|+.++|||||..+|+.........+.|-..... . .+..| +.+.-++.|+.-....+.
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~----~-~~~~D------~~~~EreRGITI~s~~~~---- 94 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAA----R-HATSD------WMAMERERGISVTTSVMQ---- 94 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC-------------------------------CTTTEEE----
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccc----c-ccccC------ChHHHHHCCCcEeeceEE----
Confidence 45789999999999999999998654222110000000000 0 00000 000111222222222111
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
+ .++++.+.||||||+.+|. ..+.+.+ .-+|.+|+|||+..|+.+++ ...++.+
T Consensus 95 ----~---------~~~~~~iNlIDTPGHvDF~------~Ev~raL--~~~DgAvlVvda~~GV~~qT-----~~v~~~a 148 (548)
T 3vqt_A 95 ----F---------PYRDRVVNLLDTPGHQDFS------EDTYRVL--TAVDSALVVIDAAKGVEAQT-----RKLMDVC 148 (548)
T ss_dssp ----E---------EETTEEEEEECCCCGGGCS------HHHHHHH--HSCSEEEEEEETTTBSCHHH-----HHHHHHH
T ss_pred ----E---------EECCEEEEEEeCCCcHHHH------HHHHHHH--HhcCceEEEeecCCCccccc-----HHHHHHH
Confidence 1 1467899999999999983 2333334 34699999999999999988 4566778
Q ss_pred hhccCCeEEEEecCCCCChH
Q 014354 228 YKTRLPLVLAFNKTDVAQHE 247 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~ 247 (426)
...++|.|+++||+|+....
T Consensus 149 ~~~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 149 RMRATPVMTFVNKMDREALH 168 (548)
T ss_dssp HHTTCCEEEEEECTTSCCCC
T ss_pred HHhCCceEEEEecccchhcc
Confidence 88999999999999998754
No 171
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.59 E-value=2.4e-15 Score=160.77 Aligned_cols=134 Identities=19% Similarity=0.233 Sum_probs=88.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
.++|+|+|+.++|||||..+|+.........+.+.... +..|.... -++.|+.-....++ +
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~---------~~~D~~~~------EreRGITI~s~~~~-~--- 62 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGT---------TRTDNTLL------ERQRGITIQTGITS-F--- 62 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSC---------CSTTCSTT------HHHHSSCSSCCCCC-C---
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCC---------cccCCcHH------HHhCCCcEEeeeEE-E---
Confidence 45699999999999999999987654332221111111 11111100 01223332222221 1
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~ 228 (426)
.++++.+.|||||||.+|. ..+.+.+ ..+|.+|+|||+..|+.+++ ...++.+.
T Consensus 63 -------------~~~~~~iNlIDTPGH~DF~------~Ev~raL--~~~DgavlVVDa~~GV~~qT-----~~v~~~a~ 116 (638)
T 3j25_A 63 -------------QWENTKVNIIDTPGHMDFL------AEVYRSL--SVLDGAILLISAKDGVQAQT-----RILFHALR 116 (638)
T ss_dssp -------------BCSSCBCCCEECCCSSSTH------HHHHHHH--TTCSEEECCEESSCTTCSHH-----HHHHHHHH
T ss_pred -------------EECCEEEEEEECCCcHHHH------HHHHHHH--HHhCEEEEEEeCCCCCcHHH-----HHHHHHHH
Confidence 1467899999999999973 2333333 34799999999999999988 45677788
Q ss_pred hccCCeEEEEecCCCCChH
Q 014354 229 KTRLPLVLAFNKTDVAQHE 247 (426)
Q Consensus 229 ~~~~P~IlVlNKiDl~~~~ 247 (426)
..++|.|+++||+|+...+
T Consensus 117 ~~~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 117 KMGIPTIFFINKIDQNGID 135 (638)
T ss_dssp HHTCSCEECCEECCSSSCC
T ss_pred HcCCCeEEEEeccccccCC
Confidence 8899999999999987653
No 172
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.59 E-value=4.4e-15 Score=133.25 Aligned_cols=118 Identities=13% Similarity=0.053 Sum_probs=67.9
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTD 242 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKiD 242 (426)
...+.+|||||+.++.... . ..+. .++++++|+|.+..... +. ....++..+. ..+.|+|||+||+|
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~---~---~~~~--~~~~~i~v~d~~~~~~s--~~-~~~~~~~~~~~~~~~~piilv~nK~D 123 (184)
T 2zej_A 55 DLVLNVWDFAGREEFYSTH---P---HFMT--QRALYLAVYDLSKGQAE--VD-AMKPWLFNIKARASSSPVILVGTHLD 123 (184)
T ss_dssp -CEEEEEEECSHHHHHTTS---H---HHHH--HSEEEEEEEEGGGCHHH--HH-THHHHHHHHHHHCTTCEEEEEEECGG
T ss_pred ceEEEEEecCCCHHHHHhh---H---HHcc--CCcEEEEEEeCCcchhH--HH-HHHHHHHHHHhhCCCCcEEEEEECCC
Confidence 4688999999987652111 1 1111 25788899998654211 11 1111222222 13789999999999
Q ss_pred CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcC---CceEEeecccCC-CHHHHHHHHHHHHHH
Q 014354 243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKN---LKSVGVSSVSGA-GIEAYFKAVEESAQE 314 (426)
Q Consensus 243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~vv~vSA~~g~-gv~~l~~~l~~~~~~ 314 (426)
+.............. .. ++ ..++. .+++++||++|. |+.+|++.|.+.++.
T Consensus 124 l~~~~~~~~~~~~~~---~~--------------~~----~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 124 VSDEKQRKACMSKIT---KE--------------LL----NKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp GCCHHHHHHHHHHHH---HH--------------TT----TCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred cccchhhHHHHHHHH---HH--------------HH----HhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 987643221111110 00 00 11111 138999999997 999999999877654
No 173
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.58 E-value=1.1e-14 Score=152.18 Aligned_cols=139 Identities=19% Similarity=0.228 Sum_probs=76.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|++|||||||+++|++........+.+.+.++.. .+. .+.. ......|+......
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~-----~~~---~D~~---------~~E~~rGiTi~~~~ 74 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQ-----HAK---SDWM---------EMEKQRGISITTSV 74 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC------------------------------------------------CCTTE
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCcccc-----cee---eccc---------hhcccCCcceeeeE
Confidence 457899999999999999999997543322222221111100 000 0000 00001121110000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
. .+ ...+..+.||||||+.++. ..+...+ ..+|++|+|+|+..+...+. ...+..+
T Consensus 75 ~--~~---------~~~~~~i~liDTPG~~df~------~~~~~~l--~~aD~~IlVvDa~~g~~~~t-----~~~~~~~ 130 (529)
T 2h5e_A 75 M--QF---------PYHDCLVNLLDTPGHEDFS------EDTYRTL--TAVDCCLMVIDAAKGVEDRT-----RKLMEVT 130 (529)
T ss_dssp E--EE---------EETTEEEEEECCCCSTTCC------HHHHHGG--GGCSEEEEEEETTTCSCHHH-----HHHHHHH
T ss_pred E--EE---------EECCeEEEEEECCCChhHH------HHHHHHH--HHCCEEEEEEeCCccchHHH-----HHHHHHH
Confidence 0 00 0245789999999998762 1222222 34799999999998876543 3344555
Q ss_pred hhccCCeEEEEecCCCCChH
Q 014354 228 YKTRLPLVLAFNKTDVAQHE 247 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~~ 247 (426)
...++|+|+|+||+|+....
T Consensus 131 ~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 131 RLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp TTTTCCEEEEEECTTSCCSC
T ss_pred HHcCCCEEEEEcCcCCcccc
Confidence 66789999999999998754
No 174
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.58 E-value=5.6e-15 Score=154.94 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=92.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+..+|+|+|.+|||||||+|+|++..+...... .+.....+... ++.+.+..
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~-------t~g~~~~~~~~------------------~~~~~v~~-- 91 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQ-------THGLNVVTKQA------------------PNIKGLEN-- 91 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC------------------CCCEEEEEG------------------GGSGGGTT--
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-------ccceEEEEecc------------------ccccceee--
Confidence 3568999999999999999999998865422111 11000000000 00000000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
.. ......+.||||||+..+... ... .+ ..++++|+|+|++... .. ..++..
T Consensus 92 --~~-----------~~~~~~~~i~Dt~G~e~~~~~---~~~---~l--~~~d~ii~V~D~s~~~-~~------~~~~~~ 143 (535)
T 3dpu_A 92 --DD-----------ELKECLFHFWDFGGQEIMHAS---HQF---FM--TRSSVYMLLLDSRTDS-NK------HYWLRH 143 (535)
T ss_dssp --CS-----------TTTTCEEEEECCCSCCTTTTT---CHH---HH--HSSEEEEEEECGGGGG-GH------HHHHHH
T ss_pred --cC-----------CCceEEEEEEECCcHHHHHHH---HHH---Hc--cCCcEEEEEEeCCCch-hH------HHHHHH
Confidence 00 023578999999998775321 111 11 2479999999996541 11 223333
Q ss_pred Hhh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 227 LYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 227 l~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
+.. .+.|+|||+||+|+....... ...+..+. .. ...+++++||++|.|+.++
T Consensus 144 l~~~~~~~pvilV~NK~Dl~~~~~v~--~~~~~~~~----------------------~~-~~~~~~~vSA~~g~gi~eL 198 (535)
T 3dpu_A 144 IEKYGGKSPVIVVMNKIDENPSYNIE--QKKINERF----------------------PA-IENRFHRISCKNGDGVESI 198 (535)
T ss_dssp HHHHSSSCCEEEEECCTTTCTTCCCC--HHHHHHHC----------------------GG-GTTCEEECCC-----CTTH
T ss_pred HHHhCCCCCEEEEEECCCcccccccC--HHHHHHHH----------------------Hh-cCCceEEEecCcccCHHHH
Confidence 333 359999999999998653211 01111100 00 1246999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 014354 305 FKAVEESAQEFME 317 (426)
Q Consensus 305 ~~~l~~~~~~~~~ 317 (426)
+.+|.+.+...+.
T Consensus 199 ~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 199 AKSLKSAVLHPDS 211 (535)
T ss_dssp HHHHHHHHTCTTS
T ss_pred HHHHHHHHhcccc
Confidence 9999998776544
No 175
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.58 E-value=1.1e-14 Score=148.86 Aligned_cols=110 Identities=18% Similarity=0.252 Sum_probs=68.3
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCC-------CCchhhhhhHHHHHHHHhhccC-CeE
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS-------ANPMTFMSNMLYACSILYKTRL-PLV 235 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~-------~~~~~~~~~~l~~~~~l~~~~~-P~I 235 (426)
.+..+.||||||+.++. ..+... ...+|++|+|+|+..+ ...+. ...+..+...++ |+|
T Consensus 82 ~~~~~~iiDtpG~~~f~------~~~~~~--~~~aD~~ilVvDa~~gsfe~~~~~~~qt-----~~~~~~~~~~~~~~ii 148 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFV------KNMITG--ASQADAAILVVSAKKGEYEAGMSVEGQT-----REHIILAKTMGLDQLI 148 (435)
T ss_dssp SSCEEEECCCSSSTTHH------HHHHHT--SSCCSEEEEEEECSTTHHHHHHSTTCHH-----HHHHHHHHHTTCTTCE
T ss_pred CCeEEEEEECCCcHHHH------HHHHhh--hhhcCEEEEEEECCCCccccccccchHH-----HHHHHHHHHcCCCeEE
Confidence 45789999999998752 112111 2458999999999875 32222 333444455666 588
Q ss_pred EEEecCCCCCh----HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhh-cCCceEEeecccCCCHHHHH
Q 014354 236 LAFNKTDVAQH----EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 236 lVlNKiDl~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~vv~vSA~~g~gv~~l~ 305 (426)
+|+||+|+... .........+..+... ++ +. ...+++++||++|.|+.+++
T Consensus 149 vviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~--------------~~-----~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 149 VAVNKMDLTEPPYDEKRYKEIVDQVSKFMRS--------------YG-----FNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp EEEECGGGSSSTTCHHHHHHHHHHHHHHHHH--------------TT-----CCCTTCEEEECBTTTTBTTTBCC
T ss_pred EEEEcccCCCccccHHHHHHHHHHHHHHHHH--------------cC-----CCcCCceEEEeecccCccccccc
Confidence 99999999872 2222333333322211 00 00 13679999999999997554
No 176
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.9e-14 Score=136.60 Aligned_cols=88 Identities=22% Similarity=0.241 Sum_probs=55.2
Q ss_pred CcEEEEEEeCCCC--CCchhhhhhHHHHH-HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHH
Q 014354 198 PTVVTYVVDTPRS--ANPMTFMSNMLYAC-SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLT 274 (426)
Q Consensus 198 ~d~vl~VVDa~~~--~~~~~~~~~~l~~~-~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 274 (426)
+|++|+|+|++.. .+... ....+..+ ......++|+|||+||+|+.....+ .....+.
T Consensus 163 ad~vilV~D~t~~~~~s~~~-~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v----~~~~~~~-------------- 223 (255)
T 3c5h_A 163 VDGFLLGIDVSRGMNRNFDD-QLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI----RDAHTFA-------------- 223 (255)
T ss_dssp CCEEEEEEECBC----CHHH-HHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH----HHHHHHH--------------
T ss_pred CCEEEEEEECCCCchhhHHH-HHHHHHHHHHHhccCCCCEEEEEEcccccccHHH----HHHHHHH--------------
Confidence 7999999999764 22211 11111111 1112357999999999999765432 1221111
Q ss_pred HHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354 275 NSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA 312 (426)
Q Consensus 275 ~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~ 312 (426)
......+++++||++|.|+.+++++|.+.+
T Consensus 224 --------~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 224 --------LSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp --------HTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------HhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 011246799999999999999999998765
No 177
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.57 E-value=6.5e-15 Score=151.57 Aligned_cols=114 Identities=12% Similarity=0.188 Sum_probs=67.6
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhh--hhHHHHHHHHhhccCC-eEEEEec
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFM--SNMLYACSILYKTRLP-LVLAFNK 240 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~--~~~l~~~~~l~~~~~P-~IlVlNK 240 (426)
.+.++.||||||+.++. ..+... ...+|++|+|||+..+..+..|. ......+..+...++| +|+|+||
T Consensus 83 ~~~~~~iiDtPGh~~f~------~~~~~~--~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK 154 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFI------KNMITG--TSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNK 154 (458)
T ss_dssp SSEEEEEEECCCCTTHH------HHHHHS--SSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred CCceEEEEECCCcHHHH------HHHHhh--hhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEc
Confidence 34689999999997652 111111 24589999999998654221110 0012233344556777 8899999
Q ss_pred CCCCC--hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhh-cCCceEEeecccCCCHHHH
Q 014354 241 TDVAQ--HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 241 iDl~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~vv~vSA~~g~gv~~l 304 (426)
+|+.. ......+...+..+... ++ +. ...+++++||++|.|+.++
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~--------------~g-----~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKK--------------VG-----YNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHH--------------HT-----CCGGGCCEEECCTTTCBTTTBC
T ss_pred cccccCCHHHHHHHHHHHHHHHHH--------------cC-----CCccCceEEEeecccCcCcccc
Confidence 99984 33333333333322211 10 10 1368999999999999755
No 178
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.57 E-value=4e-14 Score=132.71 Aligned_cols=179 Identities=15% Similarity=0.142 Sum_probs=90.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+.++|+|+|++|||||||+|+|++.......... ...+ . .+......
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~-----------~~~t-~--------------------~~~~~~~~ 74 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAA-----------KSIT-K--------------------KCEKRSSS 74 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC------------------C-C--------------------SCEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCC-----------Ccee-e--------------------eEEEEEEE
Confidence 35579999999999999999999998754211100 0011 0 00000000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccch-hchHHHHHHHHHh--cCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~--~~~d~vl~VVDa~~~~~~~~~~~~~l~~ 223 (426)
..+..+.||||||+.+.... ......+...+.. ..++++|+|+|+.+.......+ ...+
T Consensus 75 ----------------~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~--l~~~ 136 (239)
T 3lxx_A 75 ----------------WKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKA--TEKI 136 (239)
T ss_dssp ----------------ETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHH--HHHH
T ss_pred ----------------eCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHH--HHHH
Confidence 23458899999998764211 1112233333332 2479999999987533221111 0111
Q ss_pred HHHHh-hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeeccc-----
Q 014354 224 CSILY-KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS----- 297 (426)
Q Consensus 224 ~~~l~-~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~----- 297 (426)
...+. ....|+|||+||+|+.....+.++...... .+...+..+ ...++.+++..
T Consensus 137 ~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~-----------------~l~~l~~~~--~~~~~~~~~~~~~~~~ 197 (239)
T 3lxx_A 137 LKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPE-----------------DIQDLMDIF--GDRYCALNNKATGAEQ 197 (239)
T ss_dssp HHHHHHHHGGGEEEEEECGGGC------------CH-----------------HHHHHHHHH--SSSEEECCTTCCHHHH
T ss_pred HHHhhhhccceEEEEEeCCccCCcccHHHHHHhchH-----------------HHHHHHHHc--CCEEEEEECCCCcccc
Confidence 11111 245699999999999876543333221100 001111122 23466666553
Q ss_pred CCCHHHHHHHHHHHHHH
Q 014354 298 GAGIEAYFKAVEESAQE 314 (426)
Q Consensus 298 g~gv~~l~~~l~~~~~~ 314 (426)
+.|+.+|+..+...+.+
T Consensus 198 ~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 198 EAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36889999888887765
No 179
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.56 E-value=1.3e-14 Score=134.15 Aligned_cols=182 Identities=17% Similarity=0.198 Sum_probs=102.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCC----CCCCCccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNL----GPNGGILT 143 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l----~~ng~i~~ 143 (426)
+.++|+|+|++|||||||+++|+...+.. ..+.++..++.. +++ ... +...+. ..++|+|+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~-------~~d---~~~----~~~~~~~~~~~~~~~~~~ 101 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIA-------KFD---AER----MEKHGAKVVPLNTGKECH 101 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTT-------HHH---HHH----HHTTTCEEEEEECTTCSS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCC-------Ccc---HHH----HHhcCCcEEEecCCceEe
Confidence 45789999999999999999999887654 555566555431 111 110 111110 01244433
Q ss_pred ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (426)
Q Consensus 144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~ 223 (426)
+. ...+.+....+. ..+++++++||+|...... .+. ...+.++.|+|+..+.......
T Consensus 102 -l~--~~~~~~~~~~l~--~~~~d~~~id~~g~i~~~~----------s~~-~~~~~~~~v~~~~~~~~~~~~~------ 159 (226)
T 2hf9_A 102 -LD--AHLVGHALEDLN--LDEIDLLFIENVGNLICPA----------DFD-LGTHKRIVVISTTEGDDTIEKH------ 159 (226)
T ss_dssp -CC--HHHHHHHHTTSC--GGGCSEEEEECCSCSSGGG----------GCC-CSCSEEEEEEEGGGCTTTTTTC------
T ss_pred -cc--HHHHHHHHHHHh--cCCCCEEEEeCCCCccCcc----------hhh-hccCcEEEEEecCcchhhHhhh------
Confidence 11 111112111111 2346999999999633210 000 2245678888865433221110
Q ss_pred HHHHhhccCCeEEEEecCCCCChH--hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354 224 CSILYKTRLPLVLAFNKTDVAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301 (426)
Q Consensus 224 ~~~l~~~~~P~IlVlNKiDl~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv 301 (426)
....+.|.++|+||+|+.... ........+. .+....+++++||++|.|+
T Consensus 160 ---~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~Sa~~g~gv 211 (226)
T 2hf9_A 160 ---PGIMKTADLIVINKIDLADAVGADIKKMENDAK-------------------------RINPDAEVVLLSLKTMEGF 211 (226)
T ss_dssp ---HHHHTTCSEEEEECGGGHHHHTCCHHHHHHHHH-------------------------HHCTTSEEEECCTTTCTTH
T ss_pred ---hhHhhcCCEEEEeccccCchhHHHHHHHHHHHH-------------------------HhCCCCeEEEEEecCCCCH
Confidence 112468999999999986532 1111111111 1223468999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014354 302 EAYFKAVEESAQE 314 (426)
Q Consensus 302 ~~l~~~l~~~~~~ 314 (426)
.+++++|.+.+..
T Consensus 212 ~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 212 DKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999876643
No 180
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.56 E-value=1.9e-14 Score=159.41 Aligned_cols=118 Identities=16% Similarity=0.140 Sum_probs=74.4
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC-eEEEEecCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTD 242 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P-~IlVlNKiD 242 (426)
.+..+.||||||+.++. ..+.. ....+|++|+|||+..+...++ ...+..+...++| +|+|+||+|
T Consensus 357 ~~~kI~IIDTPGHedF~------~~mi~--gas~AD~aILVVDAtdGv~~QT-----rEhL~ll~~lgIP~IIVVINKiD 423 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYV------KNMIT--GAAQMDGAILVVAATDGPMPQT-----REHILLGRQVGVPYIIVFLNKCD 423 (1289)
T ss_dssp SSCEEEEEECCCHHHHH------HHHHH--TSCCCSEEEEEEETTTCSCTTH-----HHHHHHHHHHTCSCEEEEEECCT
T ss_pred CCEEEEEEECCChHHHH------HHHHH--HHhhCCEEEEEEcCCccCcHHH-----HHHHHHHHHcCCCeEEEEEeecc
Confidence 45789999999997751 11111 1245899999999999876655 2233445567899 689999999
Q ss_pred CCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccC--------CCHHHHHHHHHHHH
Q 014354 243 VAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSG--------AGIEAYFKAVEESA 312 (426)
Q Consensus 243 l~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g--------~gv~~l~~~l~~~~ 312 (426)
+..... ...+...+..+... ++ + ....+++++||++| .|+.+|+++|...+
T Consensus 424 Lv~d~e~le~i~eEi~elLk~--------------~G-----~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 424 MVDDEELLELVEMEVRELLSQ--------------YD-----FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TCCCHHHHHHHHHHHHHHHHH--------------TT-----SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred cccchhhHHHHHHHHHHHHHh--------------cc-----ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 986332 22222333322211 00 1 12468999999999 45677777666544
Q ss_pred H
Q 014354 313 Q 313 (426)
Q Consensus 313 ~ 313 (426)
+
T Consensus 485 p 485 (1289)
T 3avx_A 485 P 485 (1289)
T ss_dssp C
T ss_pred C
Confidence 3
No 181
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.56 E-value=3.3e-14 Score=153.26 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=51.3
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl 243 (426)
.+.++.||||||+.++. ..+...+. .+|++|+|+|+..+...++ ...+..+...++|.|+|+||+|+
T Consensus 73 ~~~~i~liDTPG~~df~------~~~~~~l~--~aD~~llVvDa~~g~~~~~-----~~~~~~~~~~~~p~ilviNK~Dl 139 (693)
T 2xex_A 73 EGHRVNIIDTPGHVDFT------VEVERSLR--VLDGAVTVLDAQSGVEPQT-----ETVWRQATTYGVPRIVFVNKMDK 139 (693)
T ss_dssp TTEEEEEECCCCCSSCC------HHHHHHHH--HCSEEEEEEETTTBSCHHH-----HHHHHHHHHTTCCEEEEEECTTS
T ss_pred CCeeEEEEECcCCcchH------HHHHHHHH--HCCEEEEEECCCCCCcHHH-----HHHHHHHHHcCCCEEEEEECCCc
Confidence 35789999999998763 12223332 3799999999998876654 23344456678999999999999
Q ss_pred CCh
Q 014354 244 AQH 246 (426)
Q Consensus 244 ~~~ 246 (426)
...
T Consensus 140 ~~~ 142 (693)
T 2xex_A 140 LGA 142 (693)
T ss_dssp TTC
T ss_pred ccc
Confidence 874
No 182
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.56 E-value=3.6e-14 Score=143.86 Aligned_cols=170 Identities=22% Similarity=0.329 Sum_probs=101.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
+....|+|+|+|||||||||++|++... .+..+++++ +.++.|.+..
T Consensus 155 k~g~~VgLVG~~gAGKSTLL~~Lsg~~~-------------~i~~~~ftT------------------l~p~~G~V~~-- 201 (416)
T 1udx_A 155 MLIADVGLVGYPNAGKSSLLAAMTRAHP-------------KIAPYPFTT------------------LSPNLGVVEV-- 201 (416)
T ss_dssp CCSCSEEEECCGGGCHHHHHHHHCSSCC-------------EECCCTTCS------------------SCCEEEEEEC--
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcCCc-------------cccCcccce------------------ecceeeEEEe--
Confidence 4456799999999999999999998752 133344443 1111222221
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
.....+.++||||+.+.... ..+.....+. ...++.+++|+|+. ..+...++.....+.
T Consensus 202 ----------------~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~--~era~~lL~vvDls--~~~~~~ls~g~~el~ 261 (416)
T 1udx_A 202 ----------------SEEERFTLADIPGIIEGASEGKGLGLEFLRH--IARTRVLLYVLDAA--DEPLKTLETLRKEVG 261 (416)
T ss_dssp ----------------SSSCEEEEEECCCCCCCGGGSCCSCHHHHHH--HTSSSEEEEEEETT--SCHHHHHHHHHHHHH
T ss_pred ----------------cCcceEEEEeccccccchhhhhhhhHHHHHH--HHHHHhhhEEeCCc--cCCHHHHHHHHHHHH
Confidence 11257899999999763211 1122222221 24579999999996 222111111111111
Q ss_pred HHh--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354 226 ILY--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA 303 (426)
Q Consensus 226 ~l~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~ 303 (426)
.+. -...|.|||+||+|+..... ...+..... ....+++.+||+++.|+.+
T Consensus 262 ~la~aL~~~P~ILVlNKlDl~~~~~----~~~l~~~l~-----------------------~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 262 AYDPALLRRPSLVALNKVDLLEEEA----VKALADALA-----------------------REGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp HHCHHHHHSCEEEEEECCTTSCHHH----HHHHHHHHH-----------------------TTTSCEEECCTTTCTTHHH
T ss_pred HHhHHhhcCCEEEEEECCChhhHHH----HHHHHHHHH-----------------------hcCCeEEEEECCCccCHHH
Confidence 111 24689999999999987622 112211110 0135799999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014354 304 YFKAVEESAQEFM 316 (426)
Q Consensus 304 l~~~l~~~~~~~~ 316 (426)
|+++|.+.+.+.+
T Consensus 315 L~~~i~~~l~~~~ 327 (416)
T 1udx_A 315 LKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887643
No 183
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.55 E-value=4.7e-15 Score=153.01 Aligned_cols=111 Identities=19% Similarity=0.268 Sum_probs=63.6
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCC-------chhhhhhHHHHHHHHhhccCC-eEE
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN-------PMTFMSNMLYACSILYKTRLP-LVL 236 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~-------~~~~~~~~l~~~~~l~~~~~P-~Il 236 (426)
+..+.||||||+.++.. .+... ...+|++|+|||+..+.. .++ +..+..+...++| +|+
T Consensus 120 ~~~~~iiDtPGh~~f~~------~~~~~--~~~aD~~ilVvDa~~g~~e~sf~~~~qt-----~e~l~~~~~~~vp~iiv 186 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVT------NMING--ASQADIGVLVISARRGEFEAGFERGGQT-----REHAVLARTQGINHLVV 186 (467)
T ss_dssp SEEEEECCCCC-------------------TTSCSEEEEEEECSTTHHHHTTSTTCCH-----HHHHHHHHHTTCSSEEE
T ss_pred CeEEEEEECCCcHHHHH------HHHhh--cccCCEEEEEEeCCcCccccccCCCCcH-----HHHHHHHHHcCCCEEEE
Confidence 46799999999987521 11111 145899999999988741 222 2233445567888 899
Q ss_pred EEecCCCCC----hHhHHHHHHHHHHHHHHhccccchhhhHHHHh-hhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 237 AFNKTDVAQ----HEFALEWMQDFEVFQAAISSDHSYTSTLTNSL-SLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 237 VlNKiDl~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
|+||+|+.. .+....+...+..+... + +.. . ....+++++||++|.|+.+++
T Consensus 187 viNK~Dl~~~~~~~~~~~~i~~e~~~~l~~--------------~~g~~--~-~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 187 VINKMDEPSVQWSEERYKECVDKLSMFLRR--------------VAGYN--S-KTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp EEECTTSTTCSSCHHHHHHHHHHHHHHHHH--------------HHCCC--H-HHHEEEEECBTTTTBTTSSCC
T ss_pred EEECccCCCccccHHHHHHHHHHHHHHHHH--------------hcCCC--c-cCCceEEeccccccccccccc
Confidence 999999964 22222233333322211 0 000 0 013579999999999998765
No 184
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.55 E-value=4.8e-14 Score=140.55 Aligned_cols=159 Identities=12% Similarity=0.080 Sum_probs=87.3
Q ss_pred CCCEEEEcCCCcccccch---hchHHHHHHHHH--hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEe
Q 014354 165 HLDYVLVDTPGQIEIFTW---SASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFN 239 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~---~~~~~~l~~~~~--~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlN 239 (426)
..++.||||||+...... ......+..... ...++++|+|+|+........ ..+..+..+...+.|+|+|+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~---~~~~l~~~~~~~~~~~i~V~n 211 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPSGDRTFGVLT 211 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC---HHHHHHHHSCTTCTTEEEEEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH---HHHHHHHHhcccCCCEEEEEe
Confidence 468999999999875221 111222222221 145799999998754321111 123344445566889999999
Q ss_pred cCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHHHhhh
Q 014354 240 KTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETY 319 (426)
Q Consensus 240 KiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~~~~ 319 (426)
|+|+...... +...+.. . ......+++++|++++.|+.+.+..+.....+...+-
T Consensus 212 K~Dl~~~~~~--~~~~~~~--------------------~---~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~~e~~ff~ 266 (360)
T 3t34_A 212 KIDLMDKGTD--AVEILEG--------------------R---SFKLKYPWVGVVNRSQADINKNVDMIAARKREREYFS 266 (360)
T ss_dssp CGGGCCTTCC--SHHHHTT--------------------S---SSCCSSCCEEECCCCHHHHHTTCCHHHHHHHHHHHHT
T ss_pred CCccCCCccc--HHHHHcC--------------------c---cccccCCeEEEEECChHHhccCCCHHHHHHHHHHHhc
Confidence 9999875421 1111110 0 1122357899999999999887766655555433221
Q ss_pred hhHHHh---HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014354 320 KADLDK---RRAEKQRLEEERQKENINKLRKDMEK 351 (426)
Q Consensus 320 ~~~~~~---~~~~~~~~~e~~re~~~~~l~~e~~~ 351 (426)
....+. .+-....+.+.+.+.+.+++.+.+|.
T Consensus 267 ~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~ 301 (360)
T 3t34_A 267 NTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPG 301 (360)
T ss_dssp TCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTT
T ss_pred CCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHH
Confidence 111111 11112334445555566667766653
No 185
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.54 E-value=3.1e-14 Score=153.48 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=51.5
Q ss_pred cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (426)
Q Consensus 164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl 243 (426)
.+..+.||||||+.++. ......+. .+|++|+|+|+..+...++ ...+..+...++|.++|+||+|+
T Consensus 75 ~~~~i~liDTPG~~df~------~~~~~~l~--~aD~~ilVvDa~~g~~~~t-----~~~~~~~~~~~~p~ivviNKiD~ 141 (691)
T 1dar_A 75 KDHRINIIDTPGHVDFT------IEVERSMR--VLDGAIVVFDSSQGVEPQS-----ETVWRQAEKYKVPRIAFANKMDK 141 (691)
T ss_dssp TTEEEEEECCCSSTTCH------HHHHHHHH--HCSEEEEEEETTTCSCHHH-----HHHHHHHHHTTCCEEEEEECTTS
T ss_pred CCeEEEEEECcCccchH------HHHHHHHH--HCCEEEEEEECCCCcchhh-----HHHHHHHHHcCCCEEEEEECCCc
Confidence 35789999999998752 22223332 3699999999998876654 22334456679999999999999
Q ss_pred CChH
Q 014354 244 AQHE 247 (426)
Q Consensus 244 ~~~~ 247 (426)
....
T Consensus 142 ~~~~ 145 (691)
T 1dar_A 142 TGAD 145 (691)
T ss_dssp TTCC
T ss_pred ccCC
Confidence 8643
No 186
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.54 E-value=2.5e-14 Score=153.63 Aligned_cols=133 Identities=23% Similarity=0.225 Sum_probs=78.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.++.+|+|+|++|+|||||+++|++........+.|.+... +. +.. .. + ...++ ++.....
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~-~~--------d~~-~~---e--~~~gi----ti~~~~~ 67 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTT-TT--------DYT-PE---A--KLHRT----TVRTGVA 67 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCC-SS--------CCS-HH---H--HHTTS----CCSCEEE
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcc-cc--------cCC-HH---H--HhcCC----eEEecce
Confidence 46789999999999999999999976543211111110000 00 000 00 0 00111 1110000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
.+. .....+.||||||+.++. ..+...++ .+|.+++|+|+..+...+. ...+..
T Consensus 68 ~~~-------------~~~~~~nliDTpG~~~f~------~~~~~~l~--~ad~~ilVvD~~~g~~~qt-----~~~~~~ 121 (665)
T 2dy1_A 68 PLL-------------FRGHRVFLLDAPGYGDFV------GEIRGALE--AADAALVAVSAEAGVQVGT-----ERAWTV 121 (665)
T ss_dssp EEE-------------ETTEEEEEEECCCSGGGH------HHHHHHHH--HCSEEEEEEETTTCSCHHH-----HHHHHH
T ss_pred EEe-------------eCCEEEEEEeCCCccchH------HHHHHHHh--hcCcEEEEEcCCcccchhH-----HHHHHH
Confidence 000 234688999999998752 22333332 3699999999998887654 234455
Q ss_pred HhhccCCeEEEEecCCCC
Q 014354 227 LYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~ 244 (426)
+...++|.|+|+||+|+.
T Consensus 122 ~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 122 AERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHTTCCEEEEEECGGGC
T ss_pred HHHccCCEEEEecCCchh
Confidence 566789999999999997
No 187
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.53 E-value=5.5e-14 Score=127.65 Aligned_cols=162 Identities=16% Similarity=0.204 Sum_probs=94.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
..+|+|+|++|||||||+++|++..+..... |.+.. .+.. +.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~-------~t~~~-~~~~----------------------~~i~~~---- 50 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-------STIGV-EFAT----------------------RSIQVD---- 50 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----------CCCSC-EEEE----------------------EEEEET----
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCC-------Cccce-eEEE----------------------EEEEEC----
Confidence 4689999999999999999999986532110 11000 0000 000000
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~ 228 (426)
.....+.||||||+..+.. ... ..+ ..++++++|+|......... ...++..+.
T Consensus 51 --------------g~~~~~~i~Dt~g~~~~~~---~~~---~~~--~~~~~~i~v~d~~~~~s~~~----~~~~~~~~~ 104 (199)
T 2f9l_A 51 --------------GKTIKAQIWDTAGQERYRR---ITS---AYY--RGAVGALLVYDIAKHLTYEN----VERWLKELR 104 (199)
T ss_dssp --------------TEEEEEEEEECSSGGGTTC---CCH---HHH--TTCSEEEEEEETTCHHHHHT----HHHHHHHHH
T ss_pred --------------CEEEEEEEEECCCchhhhh---hhH---HHH--hcCCEEEEEEECcCHHHHHH----HHHHHHHHH
Confidence 1225678999999876421 111 111 24689999999865332111 111112222
Q ss_pred ---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 229 ---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 229 ---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
..+.|+++|+||+|+....... ......+.. .....++++||+++.|+.+++
T Consensus 105 ~~~~~~~~i~~v~nK~Dl~~~~~~~--~~~a~~l~~-----------------------~~~~~~~d~Sal~~~~i~~l~ 159 (199)
T 2f9l_A 105 DHADSNIVIMLVGNKSDLRHLRAVP--TDEARAFAE-----------------------KNNLSFIETSALDSTNVEEAF 159 (199)
T ss_dssp HHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHH-----------------------HTTCEEEECCTTTCTTHHHHH
T ss_pred HhcCCCCeEEEEEECcccccccCcC--HHHHHHHHH-----------------------HcCCeEEEEeCCCCCCHHHHH
Confidence 2468999999999997532210 001111110 123568999999999999999
Q ss_pred HHHHHHHHHH
Q 014354 306 KAVEESAQEF 315 (426)
Q Consensus 306 ~~l~~~~~~~ 315 (426)
++|.+.+...
T Consensus 160 ~~l~~~~~~~ 169 (199)
T 2f9l_A 160 KNILTEIYRI 169 (199)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 188
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.52 E-value=1.4e-13 Score=148.66 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=50.8
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
.+.+.||||||+.++. ..+...+ ..+|.+|+|+|+..+...++ ...+..+...++|.++|+||+|+.
T Consensus 81 ~~~i~liDTPG~~df~------~~~~~~l--~~aD~aIlVvDa~~gv~~qt-----~~~~~~~~~~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFT------IEVERSM--RVLDGAVMVYCAVGGVQPQS-----ETVWRQANKYKVPRIAFVNKMDRM 147 (704)
T ss_pred ceeEEEEeCCCccchH------HHHHHHH--HHCCEEEEEEeCCCCCcHHH-----HHHHHHHHHcCCCEEEEEeCCCcc
Confidence 4789999999998762 1222233 23699999999998876544 233444556789999999999998
Q ss_pred ChH
Q 014354 245 QHE 247 (426)
Q Consensus 245 ~~~ 247 (426)
...
T Consensus 148 ~~~ 150 (704)
T 2rdo_7 148 GAN 150 (704)
T ss_pred ccc
Confidence 653
No 189
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.49 E-value=3e-13 Score=121.53 Aligned_cols=130 Identities=21% Similarity=0.312 Sum_probs=74.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.+.++|+|+|++|||||||+|+|++..... .+ .+..+..+ ..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~----~~------~~~~~~~~--------------------------~~-- 87 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TV------VSQEPLSA--------------------------AD-- 87 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------------------------------------C--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc----cc------ccCCCcee--------------------------ee--
Confidence 356799999999999999999999876431 00 00001000 00
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
.....+.||||||+..+. ......+...+ ..+|++|+|+|+... ...+..........
T Consensus 88 ----------------~~~~~~~l~Dt~G~~~~~--~~~~~~~~~~~--~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~ 145 (193)
T 2ged_A 88 ----------------YDGSGVTLVDFPGHVKLR--YKLSDYLKTRA--KFVKGLIFMVDSTVD--PKKLTTTAEFLVDI 145 (193)
T ss_dssp ----------------CCCTTCSEEEETTCCBSS--CCHHHHHHHHG--GGEEEEEEEEETTCC--HHHHHHHHHHHHHH
T ss_pred ----------------ecCCeEEEEECCCCchHH--HHHHHHHHhhc--ccCCEEEEEEECCCC--chhHHHHHHHHHHH
Confidence 134688999999997752 11112121111 236899999999721 11211111111111
Q ss_pred H------hhccCCeEEEEecCCCCChHhHHHHHHHH
Q 014354 227 L------YKTRLPLVLAFNKTDVAQHEFALEWMQDF 256 (426)
Q Consensus 227 l------~~~~~P~IlVlNKiDl~~~~~~~~~~~~~ 256 (426)
+ ...++|+++|+||+|+........+.+.+
T Consensus 146 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 146 LSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp HHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred HhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 1 12479999999999998866544444444
No 190
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.48 E-value=1.9e-13 Score=147.80 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=56.4
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
++.+.|||||||.+|. ..+...++ .+|.+|+|||+..|+..++ ...++.+.+.++|.|+|+||+|+.
T Consensus 84 ~~~iNlIDTPGHvDF~------~Ev~~aLr--~~DgavlvVDaveGV~~qT-----~~v~~~a~~~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFT------IEVERSLR--VLDGAVVVFCGTSGVEPQS-----ETVWRQANKYGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CEEEEEECCCSCTTCH------HHHHHHHH--HCSEEEEEEETTTCSCHHH-----HHHHHHHHHHTCCEEEEEECSSST
T ss_pred CEEEEEEeCCCCcccH------HHHHHHHH--HhCeEEEEEECCCCCchhH-----HHHHHHHHHcCCCeEEEEcccccc
Confidence 4678999999999983 33444443 3699999999999999987 456777888899999999999997
Q ss_pred ChH
Q 014354 245 QHE 247 (426)
Q Consensus 245 ~~~ 247 (426)
..+
T Consensus 151 ~a~ 153 (709)
T 4fn5_A 151 GAN 153 (709)
T ss_dssp TCC
T ss_pred Ccc
Confidence 653
No 191
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.47 E-value=7.4e-14 Score=139.38 Aligned_cols=119 Identities=14% Similarity=0.152 Sum_probs=54.9
Q ss_pred CCEEEEcCCCccccc----chhchHHHHH----HHHHh-----------cCCcEEEEEEeC-CCCCCchhhhhhHHHHHH
Q 014354 166 LDYVLVDTPGQIEIF----TWSASGAIIT----EAFAS-----------TFPTVVTYVVDT-PRSANPMTFMSNMLYACS 225 (426)
Q Consensus 166 ~~~~liDTPGi~e~~----~~~~~~~~l~----~~~~~-----------~~~d~vl~VVDa-~~~~~~~~~~~~~l~~~~ 225 (426)
..+.||||||+.+.. .+......+. .++.. ...+++||+|+. .+++...+. .++.
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~-----~~~~ 169 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV-----AFMK 169 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHH-----HHHH
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHH-----HHHH
Confidence 468999999995431 1222222111 22222 124679999986 555554432 1222
Q ss_pred HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354 226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~ 305 (426)
.+ ..++|+|+|+||+|+.....+..+...+..+. . ...++++++||++|.| .+.+
T Consensus 170 ~l-~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~----------------------~-~~~i~~~~~Sa~~~~~-~e~~ 224 (361)
T 2qag_A 170 AI-HNKVNIVPVIAKADTLTLKERERLKKRILDEI----------------------E-EHNIKIYHLPDAESDE-DEDF 224 (361)
T ss_dssp HT-CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHT----------------------T-CC-CCSCCCC----------C
T ss_pred Hh-ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHH----------------------H-HCCCCEEeCCCcCCCc-chhH
Confidence 22 35789999999999998765433322222111 0 1236799999999998 6666
Q ss_pred HHHHHHHHH
Q 014354 306 KAVEESAQE 314 (426)
Q Consensus 306 ~~l~~~~~~ 314 (426)
..+...+..
T Consensus 225 ~~l~~~i~~ 233 (361)
T 2qag_A 225 KEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666655444
No 192
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.46 E-value=2.5e-13 Score=122.71 Aligned_cols=160 Identities=16% Similarity=0.231 Sum_probs=91.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
...+|+|+|++|||||||+++|++..+..... |.+.. .+.. +.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~-------~t~~~-~~~~----------------------~~i~~~--- 74 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-------STIGV-EFAT----------------------RSIQVD--- 74 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCC-------CCCSE-EEEE----------------------EEEEET---
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-------Cccce-EEEE----------------------EEEEEC---
Confidence 34789999999999999999999986542110 10000 0000 000000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
.....+.+|||||+.++.. .. ...+ ..++.+++|+|...... +. ....++..+
T Consensus 75 ---------------g~~~~~~i~Dt~g~~~~~~--~~----~~~~--~~~~~~i~v~d~~~~~s---~~-~~~~~~~~~ 127 (191)
T 1oix_A 75 ---------------GKTIKAQIWDTAGLERYRA--IT----SAYY--RGAVGALLVYDIAKHLT---YE-NVERWLKEL 127 (191)
T ss_dssp ---------------TEEEEEEEEEECSCCSSSC--CC----HHHH--TTCCEEEEEEETTCHHH---HH-THHHHHHHH
T ss_pred ---------------CEEEEEEEEECCCCcchhh--hh----HHHh--hcCCEEEEEEECcCHHH---HH-HHHHHHHHH
Confidence 1224567899999876421 11 1111 23578899999864321 11 111111212
Q ss_pred h---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354 228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY 304 (426)
Q Consensus 228 ~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l 304 (426)
. ..+.|+++|+||+|+....... ......+. . .....++++||+++.|+.++
T Consensus 128 ~~~~~~~~~i~~v~nK~Dl~~~~~~~--~~~a~~l~----------------------~-~~~~~~ld~Sald~~~v~~l 182 (191)
T 1oix_A 128 RDHADSNIVIMLVGNKSDLRHLRAVP--TDEARAFA----------------------E-KNGLSFIETSALDSTNVEAA 182 (191)
T ss_dssp HHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHH----------------------H-HTTCEEEECCTTTCTTHHHH
T ss_pred HHhcCCCCcEEEEEECcccccccccC--HHHHHHHH----------------------H-HcCCEEEEEeCCCCCCHHHH
Confidence 2 3468999999999986532110 00111111 0 12356889999999999999
Q ss_pred HHHHHHHH
Q 014354 305 FKAVEESA 312 (426)
Q Consensus 305 ~~~l~~~~ 312 (426)
++.|.+.+
T Consensus 183 ~~~l~~~i 190 (191)
T 1oix_A 183 FQTILTEI 190 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99987653
No 193
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.44 E-value=1.5e-12 Score=123.99 Aligned_cols=128 Identities=16% Similarity=0.236 Sum_probs=72.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+..+|+|+|.+|||||||+|+|++..... +...+.++. ....+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~------------~~~~~~~t~---------------------~~~~~~~~- 80 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVR------------VSPFQAEGL---------------------RPVMVSRT- 80 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSC------------CCSSCC-CC---------------------CCEEEEEE-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcc------------cCCCCCcce---------------------eeEEEEEE-
Confidence 45789999999999999999999976432 222222220 00000000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhch-HHHHHHHHHhcCCcEEEEEEeCCCC-CCchhhhhhHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSAS-GAIITEAFASTFPTVVTYVVDTPRS-ANPMTFMSNMLYACS 225 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~-~~~l~~~~~~~~~d~vl~VVDa~~~-~~~~~~~~~~l~~~~ 225 (426)
..+..+.||||||+.++...... ...+...+....+++++||++.... +.... ...+..+.
T Consensus 81 ---------------~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~--~~~~~~l~ 143 (262)
T 3def_A 81 ---------------MGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELD--KQVVIAIT 143 (262)
T ss_dssp ---------------ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHH--HHHHHHHH
T ss_pred ---------------ECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHH--HHHHHHHH
Confidence 23458999999999886322211 1222233333357899999776432 32221 11111111
Q ss_pred HHh--hccCCeEEEEecCCCCCh
Q 014354 226 ILY--KTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 226 ~l~--~~~~P~IlVlNKiDl~~~ 246 (426)
... ....|+++|+||+|+...
T Consensus 144 ~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 144 QTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHhchhhhcCEEEEEeCcccCCC
Confidence 111 123599999999999643
No 194
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.40 E-value=2.3e-12 Score=123.11 Aligned_cols=126 Identities=15% Similarity=0.220 Sum_probs=72.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+.++|+++|.+|+|||||+|+|++..+.. ++..+.++ +. .......
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~------------~~~~~~~t----~~-----------------~~~~~~~- 83 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVS------------ISPFQSEG----PR-----------------PVMVSRS- 83 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSC------------CCSSSCCC----SS-----------------CEEEEEE-
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccc------------ccCCCCcc----ee-----------------eEEEEEe-
Confidence 45789999999999999999999876432 22222222 00 0000000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhc-hHHHHHHHHHhcCCcEEEEEEeCCC-CCCchhhhhhHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-SGAIITEAFASTFPTVVTYVVDTPR-SANPMTFMSNMLYACS 225 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~-~~~~l~~~~~~~~~d~vl~VVDa~~-~~~~~~~~~~~l~~~~ 225 (426)
..+..+.||||||+.++..... ....+...+....+|++|||+|... .+.... ..++.
T Consensus 84 ---------------~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~-----~~~~~ 143 (270)
T 1h65_A 84 ---------------RAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLD-----KLVAK 143 (270)
T ss_dssp ---------------ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHH-----HHHHH
T ss_pred ---------------eCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHH-----HHHHH
Confidence 2346799999999987532111 1112222222234799999987643 232221 11222
Q ss_pred HHhh-----ccCCeEEEEecCCCCChH
Q 014354 226 ILYK-----TRLPLVLAFNKTDVAQHE 247 (426)
Q Consensus 226 ~l~~-----~~~P~IlVlNKiDl~~~~ 247 (426)
.+.. ...|+|+|+||+|+..+.
T Consensus 144 ~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 144 AITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHhCcccccCEEEEEECcccCCcC
Confidence 2221 226999999999998764
No 195
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.40 E-value=8.1e-13 Score=129.35 Aligned_cols=124 Identities=15% Similarity=0.173 Sum_probs=71.7
Q ss_pred CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCc-hhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP-MTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~-~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
..+.||||||+.++... .. ....++ ..++++|+|+|++..... ..++...+..+.. ...++|++||+||+|+.
T Consensus 46 v~LqIWDTAGQErf~~~-~l--~~~~yy--r~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~-~~~~ipillvgNK~DL~ 119 (331)
T 3r7w_B 46 IDLAVMELPGQLNYFEP-SY--DSERLF--KSVGALVYVIDSQDEYINAITNLAMIIEYAYK-VNPSINIEVLIHKVDGL 119 (331)
T ss_dssp SCEEEEECCSCSSSCCC-SH--HHHHHH--TTCSEEEEECCCSSCTTHHHHHHHHHHHHHHH-HCTTCEEEEECCCCCSS
T ss_pred EEEEEEECCCchhccch-hh--hhhhhc--cCCCEEEEEEECCchHHHHHHHHHHHHHHHhh-cCCCCcEEEEEECcccC
Confidence 68999999999987310 00 011223 347899999999875222 2233221211111 12478999999999998
Q ss_pred ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh---hcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354 245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF---YKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313 (426)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~vv~vSA~~g~gv~~l~~~l~~~~~ 313 (426)
.........+.+.. +.+.-+... ...++++.+||+. .+|.+.|..|...+.
T Consensus 120 ~~~~R~~~~R~V~~-----------------~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 120 SEDFKVDAQRDIMQ-----------------RTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp CSHHHHHHHHHHHH-----------------HHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSS
T ss_pred chhhhhhHHHHhhH-----------------HHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHH
Confidence 76543222222221 111111111 0246799999987 589999888876543
No 196
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.39 E-value=1.1e-12 Score=127.78 Aligned_cols=87 Identities=10% Similarity=0.059 Sum_probs=46.8
Q ss_pred CcEEEEEEeCCC-CCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHH
Q 014354 198 PTVVTYVVDTPR-SANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNS 276 (426)
Q Consensus 198 ~d~vl~VVDa~~-~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 276 (426)
++++||+++.+. ++++... ..+..+ ..+.|+++|+||+|+.....+....+.+..+..
T Consensus 127 a~~ll~ldePt~~~Ld~~~~-----~~l~~l-~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~--------------- 185 (301)
T 2qnr_A 127 VHCCFYFISPFGHGLKPLDV-----AFMKAI-HNKVNIVPVIAKADTLTLKERERLKKRILDEIE--------------- 185 (301)
T ss_dssp CCEEEEEECSSSSSCCHHHH-----HHHHHH-TTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHH---------------
T ss_pred hhheeeeecCcccCCCHHHH-----HHHHHH-HhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHH---------------
Confidence 455777777544 5776541 222222 235799999999999986543322222221111
Q ss_pred hhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 277 LSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 277 ~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
.+ .++++++||++| |+++++..+.+.+..
T Consensus 186 -------~~-~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 186 -------EH-NIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp -------HT-TCCCCCCC----------CHHHHHHHHT
T ss_pred -------Hc-CCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 12 367899999999 999999988877654
No 197
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.39 E-value=1.4e-12 Score=135.16 Aligned_cols=209 Identities=20% Similarity=0.218 Sum_probs=111.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.++.+|+|+|++|||||||+++|+......+.++.++..|+.- +.. .+.. .....+.++...+. .++..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r---~aa-----~~qL--~~~~~~~~i~v~~~-~~~~d 167 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR---AGA-----FDQL--KQNATKARIPFYGS-YTEMD 167 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS---SHH-----HHHH--HHHHHHHTCCEEEC-CCCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc---hhH-----HHHH--HHHhhccCceEEcc-CCCCC
Confidence 4567999999999999999999998876667888888887521 100 0000 01111222211000 00000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
...-... .+......+++++||||||..... ..+...+........+|.+++|||+..+..... .+..
T Consensus 168 -p~~i~~~--al~~~~~~~~DvvIIDTpG~~~~~--~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~-------~a~~ 235 (504)
T 2j37_W 168 -PVIIASE--GVEKFKNENFEIIIVDTSGRHKQE--DSLFEEMLQVANAIQPDNIVYVMDASIGQACEA-------QAKA 235 (504)
T ss_dssp -HHHHHHH--HHHHHHHTTCCEEEEEECCCCTTC--HHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH-------HHHH
T ss_pred -HHHHHHH--HHHHHHHCCCcEEEEeCCCCcccc--hhHHHHHHHHHhhhcCceEEEEEeccccccHHH-------HHHH
Confidence 0000011 112222367999999999986531 111122222222236899999999988754211 1222
Q ss_pred HhhccCCe-EEEEecCCCCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC-HHH
Q 014354 227 LYKTRLPL-VLAFNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-IEA 303 (426)
Q Consensus 227 l~~~~~P~-IlVlNKiDl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g-v~~ 303 (426)
+.. .+|+ ++|+||+|...... ...+...+. ..-.|.. . +.-+..+..+.+.+++|++.|.| +..
T Consensus 236 ~~~-~~~i~gvVlNK~D~~~~~g~~l~~~~~~g-------~PI~fig-~----ge~~~dl~~f~~~~~vsal~G~Gdi~~ 302 (504)
T 2j37_W 236 FKD-KVDVASVIVTKLDGHAKGGGALSAVAATK-------SPIIFIG-T----GEHIDDFEPFKTQPFISKLLGMGDIEG 302 (504)
T ss_dssp HHH-HHCCCCEEEECTTSCCCCTHHHHHHHHHC-------CCEEEEE-C----SSSTTCEECCTHHHHHHCCCTTTTTTT
T ss_pred HHh-hcCceEEEEeCCccccchHHHHHHHHHhC-------CCeEEec-c----ccchhhhhccCcceeeehhcCCCcHHH
Confidence 222 2674 89999999886432 112211110 0000000 0 00011223455677899999999 999
Q ss_pred HHHHHHHH
Q 014354 304 YFKAVEES 311 (426)
Q Consensus 304 l~~~l~~~ 311 (426)
|++++.+.
T Consensus 303 Lie~i~e~ 310 (504)
T 2j37_W 303 LIDKVNEL 310 (504)
T ss_dssp THHHHTTT
T ss_pred HHHHHHHH
Confidence 99998766
No 198
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.36 E-value=7.6e-12 Score=126.56 Aligned_cols=199 Identities=12% Similarity=0.004 Sum_probs=111.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
.+.+++|+|++|||||||+|.|+|...+..+.+.+.+.+ ++ + .+++...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~--------~t----~-----------------~~~v~q~-- 116 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVE--------VT----M-----------------ERHPYKH-- 116 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----------------C-----------------CCEEEEC--
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCee--------cc----e-----------------eEEeccc--
Confidence 456899999999999999999999766554432211100 00 0 0111110
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
....++.++|+||+... . ..-..+.+.+.....+..++ ++..+ ...+ ++.+...+
T Consensus 117 ---------------~~~~~ltv~D~~g~~~~--~-~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kq-----rv~la~aL 171 (413)
T 1tq4_A 117 ---------------PNIPNVVFWDLPGIGST--N-FPPDTYLEKMKFYEYDFFII-ISATR-FKKN-----DIDIAKAI 171 (413)
T ss_dssp ---------------SSCTTEEEEECCCGGGS--S-CCHHHHHHHTTGGGCSEEEE-EESSC-CCHH-----HHHHHHHH
T ss_pred ---------------cccCCeeehHhhcccch--H-HHHHHHHHHcCCCccCCeEE-eCCCC-ccHH-----HHHHHHHH
Confidence 01247899999998542 1 11122233322222345444 66644 1222 24455556
Q ss_pred hhccCCeEEEEecCCCCCh---------HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeec--
Q 014354 228 YKTRLPLVLAFNKTDVAQH---------EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSS-- 295 (426)
Q Consensus 228 ~~~~~P~IlVlNKiDl~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA-- 295 (426)
...+.|+++|+||.|+.-- .....+.+.+..+.. ..+.+. ..+..+|++|+
T Consensus 172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~-----------------~~l~~~g~~~~~iiliSsh~ 234 (413)
T 1tq4_A 172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCV-----------------NTFRENGIAEPPIFLLSNKN 234 (413)
T ss_dssp HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHH-----------------HHHHHTTCSSCCEEECCTTC
T ss_pred HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHH-----------------HHHHhcCCCCCcEEEEecCc
Confidence 6778999999999986521 111222222222110 000111 23457899999
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhhhhhHH------HhHHHHHHHHHHHHHH
Q 014354 296 VSGAGIEAYFKAVEESAQEFMETYKADL------DKRRAEKQRLEEERQK 339 (426)
Q Consensus 296 ~~g~gv~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~e~~re 339 (426)
+.+.|++.|.+.+.+.+|+.+++|+-.. .+....+...++.+|+
T Consensus 235 l~~~~~e~L~d~I~~~Lpeg~~~~~~~~l~~~~~~~~e~k~~~~~~~i~~ 284 (413)
T 1tq4_A 235 VCHYDFPVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWL 284 (413)
T ss_dssp TTSTTHHHHHHHHHHHSCGGGHHHHHHHSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHhCccchhhHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 6777899999999999999988885222 2233444445555554
No 199
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.36 E-value=3.8e-12 Score=129.07 Aligned_cols=85 Identities=9% Similarity=0.126 Sum_probs=42.4
Q ss_pred CcEEEEEEeCC-CCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHH
Q 014354 198 PTVVTYVVDTP-RSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNS 276 (426)
Q Consensus 198 ~d~vl~VVDa~-~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 276 (426)
++++||+++++ +++.+.+. .++..+. .++|+|+|+||+|+.....+..+...+.....
T Consensus 139 ~~vlL~ldePt~~~L~~~d~-----~~lk~L~-~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~--------------- 197 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDI-----EFMKRLH-EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQ--------------- 197 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHH-----HHHHHHT-TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHH---------------
T ss_pred eeEEEEEecCcccCCCHHHH-----HHHHHHh-ccCcEEEEEEcccCccHHHHHHHHHHHHHHHH---------------
Confidence 45688888776 67776551 2233333 37899999999999987655444333332211
Q ss_pred hhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354 277 LSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (426)
Q Consensus 277 ~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~ 311 (426)
..+++++.+||.++.++..++..+...
T Consensus 198 --------~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 198 --------EHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp --------HHTCCCCCCC-----------------
T ss_pred --------HcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 124678889999999999887777553
No 200
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.33 E-value=2.4e-13 Score=138.54 Aligned_cols=240 Identities=16% Similarity=0.171 Sum_probs=125.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
++.+|+|+|++||||||++++|.+.....+.++.++..|+.-.. .+ +. +..+....++....+..++.+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~-----a~---~q--L~~~~~~~gv~v~~~~~~~~d- 166 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPA-----AY---EQ--LKQLAEKIHVPIYGDETRTKS- 166 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTT-----GG---GS--SHHHHHHSSCCEECCSSSCCS-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCch-----HH---HH--HHHhhhccCcceEecCCCCCC-
Confidence 45689999999999999999999988777889999988863210 01 00 111222333221110001000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
-..-... .+.. ..+++++||||||.... ...+...+........+|.+++|+|+..+.+. ...+..+
T Consensus 167 p~~i~~~---~l~~-~~~~D~vIIDT~G~~~~--~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~-------~~~~~~~ 233 (432)
T 2v3c_C 167 PVDIVKE---GMEK-FKKADVLIIDTAGRHKE--EKGLLEEMKQIKEITNPDEIILVIDGTIGQQA-------GIQAKAF 233 (432)
T ss_dssp SSTTHHH---HHHT-TSSCSEEEEECCCSCSS--HHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGH-------HHHHHHH
T ss_pred HHHHHHH---HHHH-hhCCCEEEEcCCCCccc--cHHHHHHHHHHHHHhcCcceeEEeeccccHHH-------HHHHHHH
Confidence 0001111 1111 26799999999998653 11111222221122358999999999765421 1122222
Q ss_pred hhccC-C-eEEEEecCCCCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC-HHH
Q 014354 228 YKTRL-P-LVLAFNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-IEA 303 (426)
Q Consensus 228 ~~~~~-P-~IlVlNKiDl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g-v~~ 303 (426)
. ..+ | ..+|+||+|...... ...+.. .+...-.|.. .+..+.....+.+.+++|++.|.| +..
T Consensus 234 ~-~~~~~i~gvVlnK~D~~~~~g~~l~~~~-------~~~~pi~~ig-----~Ge~~~dl~~f~~~~~~s~l~g~gdi~~ 300 (432)
T 2v3c_C 234 K-EAVGEIGSIIVTKLDGSAKGGGALSAVA-------ETKAPIKFIG-----IGEGIDDLEPFDPKKFISRLLGMGDLES 300 (432)
T ss_dssp H-TTSCSCEEEEEECSSSCSTTHHHHHHHH-------HSSCCEEEEC-----CSSSSSSCCBCCHHHHHHHHTCSSCSST
T ss_pred h-hcccCCeEEEEeCCCCccchHHHHHHHH-------HHCCCEEEee-----cCccccccccCCHHHHHHHHcCCCcHHH
Confidence 2 235 6 889999999875432 111111 1000000000 000011223455677889999999 888
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHh------------hhccc
Q 014354 304 YFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRK------------DMEKS 352 (426)
Q Consensus 304 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~------------e~~~~ 352 (426)
|++.+.+.+++ +. +....++...+..+++++..+.+ +|||.
T Consensus 301 L~e~~~~~~~e-------~~-~~~~~k~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~ 353 (432)
T 2v3c_C 301 LLEKAEDMVDE-------KT-EESIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGF 353 (432)
T ss_dssp TSSTTTSCSCS-------SS-STTHHHHCCSCCHHHHHHHHTTTTSCC-------------
T ss_pred HHHHHHHHHHh-------hh-HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHcccc
Confidence 88777665432 21 33344444455667777877776 88884
No 201
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.32 E-value=1.3e-11 Score=122.57 Aligned_cols=103 Identities=18% Similarity=0.275 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|+|+|.||||||||+|+|++... .+.++|++| +.|+.|.+.. .
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~-------------~v~~~p~tT------------------i~p~~g~v~~----~ 47 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI-------------EAANYPFCT------------------IEPNTGVVPM----P 47 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------------------CCCC------------------CCCCSSEEEC----C
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-------------cccCCCCce------------------ECceEEEEec----C
Confidence 5799999999999999999998752 144555554 2223333221 1
Q ss_pred c-cHHHHHHHHHH-HhcCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354 150 T-KFDEVISLIER-RADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPR 209 (426)
Q Consensus 150 ~-~~~~~~~~~~~-~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~ 209 (426)
+ .+.++...... ......+.||||||+.+.... ..++..+...+ ..+|++++|+|++.
T Consensus 48 ~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~i--r~ad~il~VvD~~~ 108 (363)
T 1jal_A 48 DPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANI--RETDAIGHVVRCFE 108 (363)
T ss_dssp CHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHH--HTCSEEEEEEECSC
T ss_pred CcccceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHH--HhcCeEEEEEecCC
Confidence 1 11111111100 001257999999999875211 11222222222 35799999999986
No 202
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.31 E-value=1.4e-11 Score=123.03 Aligned_cols=103 Identities=16% Similarity=0.227 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
.+|+|+|+||||||||+|+|++... .+..+|++| +.||-|++. +.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~-------------~v~~~p~~T------------------i~pn~g~~~----v~ 46 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANA-------------LAANYPFAT------------------IDKNVGVVP----LE 46 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHT-------------TCSSCCGGG------------------GSTTEEEEE----CC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-------------cccCCCCce------------------eccceeeEe----cC
Confidence 3589999999999999999998752 144555544 111222211 01
Q ss_pred c-cHHHHHHHHHHHh-----cCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354 150 T-KFDEVISLIERRA-----DHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPR 209 (426)
Q Consensus 150 ~-~~~~~~~~~~~~~-----~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~ 209 (426)
+ .+.+....+.... ....+.||||||+.+.... ..++..+...+ ..+|++++|+|++.
T Consensus 47 ~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~i--r~ad~ii~VvD~~~ 111 (368)
T 2dby_A 47 DERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHI--REVAAIAHVLRCFP 111 (368)
T ss_dssp CHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHH--HTCSEEEEEEECCC
T ss_pred hHHHHHHHHHhcccccccccCCceEEEEECCCccccccccchHHHHHHHHH--HhCCEEEEEEECCC
Confidence 1 1111111111000 2357999999999875321 12333333333 35799999999986
No 203
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.29 E-value=4e-11 Score=121.91 Aligned_cols=156 Identities=19% Similarity=0.180 Sum_probs=90.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
++.+|+++|++||||||++.+|+......+.++.++..|+.-. +. . .....+-...++. +.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~----aa----~--eqL~~~~~~~gvp-----v~~~~~ 163 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP----GA----Y--HQLRQLLDRYHIE-----VFGNPQ 163 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST----HH----H--HHHHHHHGGGTCE-----EECCTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch----hH----H--HHHHHHHHhcCCc-----EEecCC
Confidence 5789999999999999999999998888889999988875321 00 0 0011111122211 111000
Q ss_pred ccccHHHH-HHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 148 FTTKFDEV-ISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 148 ls~~~~~~-~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
..+...-. ..+..+...+++++||||||.... ...+...+........+|.+++|+|+..+.+.. .....
T Consensus 164 ~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~--d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~-------~~a~~ 234 (443)
T 3dm5_A 164 EKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKE--DKALIEEMKQISNVIHPHEVILVIDGTIGQQAY-------NQALA 234 (443)
T ss_dssp CCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSC--CHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH-------HHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEECCCcccc--hHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH-------HHHHH
Confidence 01111110 112233345799999999997543 122223333334445689999999998653221 12222
Q ss_pred HhhccCCeEEEEecCCCCChH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHE 247 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~ 247 (426)
+...-.+..+|+||+|.....
T Consensus 235 f~~~~~i~gVIlTKlD~~~~g 255 (443)
T 3dm5_A 235 FKEATPIGSIIVTKLDGSAKG 255 (443)
T ss_dssp HHHSCTTEEEEEECCSSCSSH
T ss_pred HHhhCCCeEEEEECCCCcccc
Confidence 333334567999999998754
No 204
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.23 E-value=1.3e-10 Score=118.14 Aligned_cols=157 Identities=20% Similarity=0.181 Sum_probs=91.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
++.+|+++|++||||||++..|.......++++.++..|+.- + +. .+ ....+....++.. ... ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r---~-~a----~e--qL~~~~~~~gv~~----~~~-~~ 160 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR---P-AA----YD--QLLQLGNQIGVQV----YGE-PN 160 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC---H-HH----HH--HHHHHHHTTTCCE----ECC-TT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc---h-hH----HH--HHHHHHHhcCCce----eec-cc
Confidence 578999999999999999999999988889999998887421 1 00 00 1111122222211 100 00
Q ss_pred ccccHHH-HHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 148 FTTKFDE-VISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 148 ls~~~~~-~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
......- ...+..+...+++++||||||...+.....+...+........++.+++|+|+..+.+.. ..+..
T Consensus 161 ~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~-------~~a~~ 233 (433)
T 3kl4_A 161 NQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY-------DLASR 233 (433)
T ss_dssp CSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH-------HHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH-------HHHHH
Confidence 0111100 012223334589999999999744111222233344444445678999999998653321 22233
Q ss_pred HhhccCCeEEEEecCCCCCh
Q 014354 227 LYKTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~ 246 (426)
+...-.+..+|+||+|....
T Consensus 234 f~~~~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 234 FHQASPIGSVIITKMDGTAK 253 (433)
T ss_dssp HHHHCSSEEEEEECGGGCSC
T ss_pred HhcccCCcEEEEeccccccc
Confidence 33334568899999998754
No 205
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.23 E-value=1.2e-11 Score=135.89 Aligned_cols=67 Identities=25% Similarity=0.260 Sum_probs=49.7
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~ 244 (426)
++.+.||||||+.++. ..+...+ ..+|.+|+|+|+..+...++. ..+..+...++|.|+|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~------~~~~~~l--~~aD~ailVvDa~~g~~~qt~-----~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFS------SEVTAAL--RVTDGALVVVDTIEGVCVQTE-----TVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSC------HHHHHHH--HTCSEEEEEEETTTBSCHHHH-----HHHHHHHHTTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhH------HHHHHHH--HhCCEEEEEEeCCCCCCHHHH-----HHHHHHHHcCCCeEEEEECCCcc
Confidence 4688999999998863 1222233 347999999999998876652 23344456789999999999986
No 206
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.13 E-value=7.4e-10 Score=111.24 Aligned_cols=109 Identities=16% Similarity=0.180 Sum_probs=63.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..++.+|+|+|+||||||||+|+|++...+. ++++|+++ +.|+.|.+..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~------------~~~~p~tT------------------i~p~~G~v~v- 65 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGN------------PANYPYAT------------------IDPEEAKVAV- 65 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTS------------TTCCSSCC------------------CCTTEEEEEE-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccc------------ccCCCcee------------------ecceeeeeee-
Confidence 4467899999999999999999999976422 56666665 2223333221
Q ss_pred ccccccHHHHHHHHHHH-hcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354 146 NLFTTKFDEVISLIERR-ADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPR 209 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~-~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~ 209 (426)
....+..+....... .-...+.+|||||+....+.. .++..+...+ ..+|.+++|+|++.
T Consensus 66 --~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~i--r~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 66 --PDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHV--RAVDAIYQVVRAFD 127 (392)
T ss_dssp --CCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHH--TTCSEEEEEEECCC
T ss_pred --CCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHH--HHHHHHHHHHhccc
Confidence 011122221111000 001357999999987653221 1333333333 34799999999865
No 207
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.13 E-value=2.9e-10 Score=108.77 Aligned_cols=143 Identities=23% Similarity=0.322 Sum_probs=76.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
++++|+|++|||||||+|.|+|...+..+.+.+.+.+. +.+.. +..+ +.+..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i-----~~~~~---~~~i---------------~~v~q----- 54 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKI-----PKTVE---IKAI---------------GHVIE----- 54 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------C-----CCCCS---CCEE---------------EESCC-----
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCccc-----Cccee---eeee---------------EEEee-----
Confidence 57999999999999999999999877766555443221 10100 0000 00000
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccc----hhchHHHHH----HHHHh------------cCCcEEEEEEeCC-
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFT----WSASGAIIT----EAFAS------------TFPTVVTYVVDTP- 208 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~----~~~~~~~l~----~~~~~------------~~~d~vl~VVDa~- 208 (426)
. ..-...+.++|+||+..... +......+. ..... +.+.++++++|.+
T Consensus 55 ----~-------~~~~~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~ 123 (270)
T 3sop_A 55 ----E-------GGVKMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG 123 (270)
T ss_dssp ---------------CCEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS
T ss_pred ----c-------CCCcCCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC
Confidence 0 01124788999999865321 111111111 11111 2357889999965
Q ss_pred CCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHH
Q 014354 209 RSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFE 257 (426)
Q Consensus 209 ~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~ 257 (426)
+++++.+ ...+..+... .++|+|+||+|..+..++......+.
T Consensus 124 ~gL~~lD-----~~~l~~L~~~-~~vI~Vi~K~D~lt~~e~~~~k~~i~ 166 (270)
T 3sop_A 124 HSLRPLD-----LEFMKHLSKV-VNIIPVIAKADTMTLEEKSEFKQRVR 166 (270)
T ss_dssp SSCCHHH-----HHHHHHHHTT-SEEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred CcCCHHH-----HHHHHHHHhc-CcEEEEEeccccCCHHHHHHHHHHHH
Confidence 7777765 3344445555 89999999999999876655544443
No 208
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.08 E-value=2.9e-09 Score=104.63 Aligned_cols=156 Identities=20% Similarity=0.215 Sum_probs=88.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
.++.+++|+|++|||||||++.|.+...+.++.+.+.+.|..-. .. .+ ....+-++.++. ++....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~----~a----~e--ql~~~~~~~gv~----~v~q~~ 192 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRA----GA----IE--QLEEHAKRIGVK----VIKHSY 192 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSST----TH----HH--HHHHHHHHTTCE----EECCCT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccccc----ch----HH--HHHHHHHHcCce----EEeccc
Confidence 56789999999999999999999999988899999887764210 00 00 111112233311 000000
Q ss_pred cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
.+.....-.-.+..+...+++++++||+|.... .......+....+...+|-.++++|+..+. . .+..+..
T Consensus 193 ~~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~--~~~l~~eL~~i~ral~~de~llvLDa~t~~---~----~~~~~~~ 263 (328)
T 3e70_C 193 GADPAAVAYDAIQHAKARGIDVVLIDTAGRSET--NRNLMDEMKKIARVTKPNLVIFVGDALAGN---A----IVEQARQ 263 (328)
T ss_dssp TCCHHHHHHHHHHHHHHHTCSEEEEEECCSCCT--TTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---H----HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccchhhHHhhccchhH--HHHHHHHHHHHHHHhcCCCCEEEEecHHHH---H----HHHHHHH
Confidence 000011111122223345689999999998653 122223333333334578999999987653 1 1222232
Q ss_pred HhhccCCeEEEEecCCCCC
Q 014354 227 LYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~ 245 (426)
+.+.--..+|++||.|...
T Consensus 264 ~~~~~~it~iilTKlD~~a 282 (328)
T 3e70_C 264 FNEAVKIDGIILTKLDADA 282 (328)
T ss_dssp HHHHSCCCEEEEECGGGCS
T ss_pred HHHhcCCCEEEEeCcCCcc
Confidence 3333345689999999754
No 209
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.06 E-value=4.6e-09 Score=106.99 Aligned_cols=155 Identities=21% Similarity=0.272 Sum_probs=86.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccC-CceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~-~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
.++.+|+++|.+|+||||+...|....... +.++.++..|+.-.. . .+. ...+....++..-.+-. .
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~-----a---~~q--l~~~~~~~~l~v~~~~~-~- 165 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPA-----A---IKQ--LETLAEQVGVDFFPSDV-G- 165 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTT-----H---HHH--HHHHHHHHTCEECCCCS-S-
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCcc-----H---HHH--HHhhcccCCeeEEeCCC-C-
Confidence 456799999999999999999999888777 899999999864211 0 010 01112222321100000 0
Q ss_pred ccccccHHHHHHHH-HHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354 146 NLFTTKFDEVISLI-ERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (426)
Q Consensus 146 ~~ls~~~~~~~~~~-~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~ 224 (426)
.+...-....+ .....+++++||||||..... ......+........++.+++|+|+..+.+. + ..+
T Consensus 166 ---~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~--~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~----~~~ 233 (433)
T 2xxa_A 166 ---QKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVD--EAMMDEIKQVHASINPVETLFVVDAMTGQDA---A----NTA 233 (433)
T ss_dssp ---SCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTC--HHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---H----HHH
T ss_pred ---CCHHHHHHHHHHHHHhCCCCEEEEECCCccccc--HHHHHHHHHHHHhhcCcceeEEeecchhHHH---H----HHH
Confidence 00111101112 222367999999999975531 1122222222223468999999999765322 1 111
Q ss_pred HHHhhccCC-eEEEEecCCCCCh
Q 014354 225 SILYKTRLP-LVLAFNKTDVAQH 246 (426)
Q Consensus 225 ~~l~~~~~P-~IlVlNKiDl~~~ 246 (426)
..+. ..+| .-+|+||+|....
T Consensus 234 ~~f~-~~l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 234 KAFN-EALPLTGVVLTKVDGDAR 255 (433)
T ss_dssp HHHH-HHSCCCCEEEECTTSSSC
T ss_pred HHHh-ccCCCeEEEEecCCCCcc
Confidence 2122 2345 3479999998654
No 210
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.04 E-value=3.1e-09 Score=103.98 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=87.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+.++++|+|++|||||||+|+|++.. .+.+++|+..+.+...+.... +.... ..+-...|||+||+.+
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~G~i~idg~~---l~~~~------~~~~el~~gCicc~~~- 70 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEFGEVSVDDQL---IGDRA------TQIKTLTNGCICCSRS- 70 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSCCSCCEEEEE---ECTTS------CEEEEETTSCEEECTT-
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEecCcccCccHHH---HhCCC------CCEEEECCCceEEccc-
Confidence 45789999999999999999999975 455666666554322221110 00000 0001114799999854
Q ss_pred ccccHHHHHH-HH---HHHhcCCCEEEEcCCCcccccchhchHHHH---HHHHHhcCCcEEEEEEeCCCCCCchhhhhhH
Q 014354 148 FTTKFDEVIS-LI---ERRADHLDYVLVDTPGQIEIFTWSASGAII---TEAFASTFPTVVTYVVDTPRSANPMTFMSNM 220 (426)
Q Consensus 148 ls~~~~~~~~-~~---~~~~~~~~~~liDTPGi~e~~~~~~~~~~l---~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~ 220 (426)
. .+...+. ++ +...-.++++++++.|+.++.. ....+ .........+.++.++|+.+.....
T Consensus 71 -~-~~~~~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~---~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------ 139 (318)
T 1nij_A 71 -N-ELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGP---IIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------ 139 (318)
T ss_dssp -S-CHHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHH---HHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------
T ss_pred -H-HHHHHHHHHHhHHhcCCCCCCEEEEeCCCCCCHHH---HHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------
Confidence 2 3333332 32 2111134999999999876521 00011 0111123356788899986432211
Q ss_pred HHHHHHHhhccCCeEEEEecCCCCCh
Q 014354 221 LYACSILYKTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 221 l~~~~~l~~~~~P~IlVlNKiDl~~~ 246 (426)
........|...+.++++||.|+...
T Consensus 140 ~~ls~g~~Q~~~ad~ill~k~dl~de 165 (318)
T 1nij_A 140 NQFTIAQSQVGYADRILLTKTDVAGE 165 (318)
T ss_dssp HHCHHHHHHHHTCSEEEEECTTTCSC
T ss_pred hhchHHHHHHHhCCEEEEECcccCCH
Confidence 11112234566788999999999965
No 211
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.01 E-value=7.4e-09 Score=100.36 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=86.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
+.+++++|++|+||||++..|.+.....++++.+++.|+.-. .. .. ....+.+..++.--.+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~---~a-----~~--ql~~~~~~~~v~v~~~~~------ 161 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP---AA-----LE--QLQQLGQQIGVPVYGEPG------ 161 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS---HH-----HH--HHHHHHHHHTCCEECCTT------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH---HH-----HH--HHHHHhccCCeEEEecCC------
Confidence 789999999999999999999999888888999988885321 00 00 011122333332100000
Q ss_pred cccHHHHH-HHHHH-HhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 149 TTKFDEVI-SLIER-RADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 149 s~~~~~~~-~~~~~-~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
...-..++ ..... ...+++++||||||.........+...+........+|.+++|+|+..+. .. ...+..
T Consensus 162 ~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~----~~~~~~ 234 (297)
T 1j8m_F 162 EKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KA----YDLASK 234 (297)
T ss_dssp CCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GH----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HH----HHHHHH
Confidence 00111111 11222 23679999999999865100111111222222334589999999996431 11 222222
Q ss_pred HhhccCC-eEEEEecCCCCCh
Q 014354 227 LYKTRLP-LVLAFNKTDVAQH 246 (426)
Q Consensus 227 l~~~~~P-~IlVlNKiDl~~~ 246 (426)
+.. .+| ..+|+||+|....
T Consensus 235 ~~~-~~~i~gvVlnk~D~~~~ 254 (297)
T 1j8m_F 235 FNQ-ASKIGTIIITKMDGTAK 254 (297)
T ss_dssp HHH-TCTTEEEEEECGGGCTT
T ss_pred HHh-hCCCCEEEEeCCCCCcc
Confidence 222 466 6789999997653
No 212
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.01 E-value=1e-10 Score=117.36 Aligned_cols=106 Identities=18% Similarity=0.215 Sum_probs=48.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
..+.+|+|+|.||||||||+|+|++.... ++++|++| +.|+.|.+..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~-------------~~~~p~tT------------------i~p~~g~v~v-- 66 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQAS-------------AENFPFCT------------------IDPNESRVPV-- 66 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------------------------------------CCSEEEEEC--
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcc-------------ccCCCccc------------------cCceeEEEEE--
Confidence 35578999999999999999999987532 44455554 1222222210
Q ss_pred cccc-cHHHHHHHHH-HHhcCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354 147 LFTT-KFDEVISLIE-RRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPR 209 (426)
Q Consensus 147 ~ls~-~~~~~~~~~~-~~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~ 209 (426)
.+ .+.++..... ...-..++.||||||+...... ..++......+ ..+|++++|+|++.
T Consensus 67 --~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~i--r~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 67 --PDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHI--SACDGIFHLTRAFE 128 (396)
T ss_dssp --CCHHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHH--HTSSSEEEEEEC--
T ss_pred --CCccceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHH--HhcCeEEEEEecCC
Confidence 11 1111111000 0001346999999999875321 01111222222 35799999999964
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.01 E-value=2.7e-11 Score=121.13 Aligned_cols=132 Identities=15% Similarity=0.072 Sum_probs=76.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
...|+++|.+|+|||||+|+|++........ +.++..|++| ++.. ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~-------~~~~~~~gtT----~~~~-----------------~~----- 208 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNV-------ITTSYFPGTT----LDMI-----------------EI----- 208 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCC-------CEEEECTTSS----CEEE-----------------EE-----
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccc-------eeecCCCCeE----EeeE-----------------EE-----
Confidence 3579999999999999999999973211111 1245555554 1111 00
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccc--hhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFT--WSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~--~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
.-+..+.|+||||+..... .......+...+.....+.++|++++........+ ..+..
T Consensus 209 --------------~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l-----~~l~~ 269 (369)
T 3ec1_A 209 --------------PLESGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGL-----ARLDY 269 (369)
T ss_dssp --------------ECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTT-----EEEEE
T ss_pred --------------EeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCE-----EEEEE
Confidence 0113589999999976531 11111223333333557899999998432111110 00122
Q ss_pred HhhccCCeEEEEecCCCCChHhHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHEFALEW 252 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~~~~~~ 252 (426)
+...+.|+++++||+|.+........
T Consensus 270 l~~~~~~~~~v~~k~d~~~~~~~~~~ 295 (369)
T 3ec1_A 270 IKGGRRSFVCYMANELTVHRTKLEKA 295 (369)
T ss_dssp EESSSEEEEEEECTTSCEEEEEGGGH
T ss_pred ccCCCceEEEEecCCcccccccHHHH
Confidence 34457899999999999876544333
No 214
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.99 E-value=1.1e-09 Score=104.99 Aligned_cols=114 Identities=10% Similarity=0.068 Sum_probs=82.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc------------ccccccccc-----ccchh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP------------AVMTLPFAA-----NIDIR 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~------------~v~~~~~~t-----~i~~r 121 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+..+++.+ ...+.
T Consensus 24 L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~ 103 (275)
T 3gfo_A 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVY 103 (275)
T ss_dssp EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHH
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHH
Confidence 4555666778899999999999999999999999888877777765432 112222211 00111
Q ss_pred h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
+ ..++.++++.+++..... .....||+|++|++.+|+++..+++++|+|.|
T Consensus 104 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~--~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEP 170 (275)
T 3gfo_A 104 QDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD--KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEP 170 (275)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT--SBGGGSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc--CCcccCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 1 124567888998865322 22345899999999999999999999999999
No 215
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.99 E-value=1.9e-09 Score=107.03 Aligned_cols=115 Identities=14% Similarity=0.110 Sum_probs=84.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccccc----chh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAANI----DIR 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~i----~~r 121 (426)
..+.++...++.+++|+|++|||||||++.|.|...+..+.+.+.+.+.. +..+++..++ .++
T Consensus 44 L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~ 123 (366)
T 3tui_C 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVF 123 (366)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHH
T ss_pred EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHH
Confidence 55667778889999999999999999999999998888887777654421 1222222111 011
Q ss_pred h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+ ..++.++++.+++.....-. ...||+|++|++.+|+++..+++++|+|.|-
T Consensus 124 env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~--~~~LSGGqkQRVaIArAL~~~P~lLLlDEPT 191 (366)
T 3tui_C 124 GNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY--PSNLSGGQKQRVAIARALASNPKVLLCDQAT 191 (366)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCC--TTTSCHHHHHHHHHHHHTTTCCSEEEEESTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 1 12456789999987543322 2369999999999999999999999999993
No 216
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.97 E-value=1.9e-09 Score=106.90 Aligned_cols=114 Identities=15% Similarity=0.143 Sum_probs=82.5
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc------------ccccccccccc----chh-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP------------AVMTLPFAANI----DIR- 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~------------~v~~~~~~t~i----~~r- 121 (426)
..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+. .+..+++...+ .++
T Consensus 20 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~e 99 (359)
T 3fvq_A 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYR 99 (359)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHH
T ss_pred EEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHH
Confidence 4556667778899999999999999999999999888877777655431 01111111110 011
Q ss_pred ---------------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 122 ---------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 122 ---------------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
...++.++++.+++....... ...||+|++|++.+++++..+++++|+|.|
T Consensus 100 ni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~--~~~LSGGq~QRValArAL~~~P~lLLLDEP 165 (359)
T 3fvq_A 100 NIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRY--PHELSGGQQQRAALARALAPDPELILLDEP 165 (359)
T ss_dssp HHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSC--GGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 122467789999987543322 236999999999999999999999999999
No 217
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.97 E-value=3.5e-09 Score=108.72 Aligned_cols=160 Identities=17% Similarity=0.200 Sum_probs=87.0
Q ss_pred CCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCC
Q 014354 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGG 140 (426)
Q Consensus 61 ~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~ 140 (426)
..+....++.+|+|+|++|||||||++.|.+.....++.+.+.+.|..-. .. ... +..+-.+.++ +
T Consensus 285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~----aa----~eQ--L~~~~~r~~I----~ 350 (503)
T 2yhs_A 285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRA----AA----VEQ--LQVWGQRNNI----P 350 (503)
T ss_dssp CCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCH----HH----HHH--HHHHHHHHTC----C
T ss_pred CceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccch----hh----HHH--HHHHHHhcCc----e
Confidence 44555678889999999999999999999999888888888876653210 00 000 0001011111 1
Q ss_pred cccc-cccc-cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHH---HHHHHh---cCCcEEEEEEeCCCCCC
Q 014354 141 ILTS-LNLF-TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII---TEAFAS---TFPTVVTYVVDTPRSAN 212 (426)
Q Consensus 141 i~~~-~~~l-s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l---~~~~~~---~~~d~vl~VVDa~~~~~ 212 (426)
++.. ...+ .......+ ..+...+++++||||+|..... ..+...+ ....+. ..++-+++|+|+..+.+
T Consensus 351 vV~Q~~~~~p~~tV~e~l--~~a~~~~~DvVLIDTaGrl~~~--~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~ 426 (503)
T 2yhs_A 351 VIAQHTGADSASVIFDAI--QAAKARNIDVLIADTAGRLQNK--SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN 426 (503)
T ss_dssp EECCSTTCCHHHHHHHHH--HHHHHTTCSEEEECCCCSCCCH--HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH
T ss_pred EEecccCcCHHHHHHHHH--HHHHhcCCCEEEEeCCCccchh--hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH
Confidence 1111 0001 11122222 2233567899999999985431 1111222 222221 23678899999876532
Q ss_pred chhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354 213 PMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 213 ~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~ 245 (426)
... .+..+...--...+|+||.|...
T Consensus 427 al~-------~ak~f~~~~~itgvIlTKLD~ta 452 (503)
T 2yhs_A 427 AVS-------QAKLFHEAVGLTGITLTKLDGTA 452 (503)
T ss_dssp HHH-------HHHHHHHHTCCSEEEEECGGGCS
T ss_pred HHH-------HHHHHHhhcCCCEEEEEcCCCcc
Confidence 221 12222222123568999999653
No 218
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.97 E-value=3.5e-09 Score=99.53 Aligned_cols=112 Identities=12% Similarity=0.113 Sum_probs=79.6
Q ss_pred CCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------ccccccccccc----chh------
Q 014354 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------AVMTLPFAANI----DIR------ 121 (426)
Q Consensus 60 ~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------~v~~~~~~t~i----~~r------ 121 (426)
.+.+....+ .+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+...++...+ .++
T Consensus 16 ~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~ 94 (240)
T 2onk_A 16 LNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYG 94 (240)
T ss_dssp EEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTT
T ss_pred eeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHH
Confidence 344555567 89999999999999999999999888888877755331 12222222111 011
Q ss_pred --------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 122 --------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 122 --------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
...++.++++.+++...... ....||+|+++++.+++++..+++++|+|.|
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LSgGqkqRv~lAral~~~p~lllLDEP 153 (240)
T 2onk_A 95 LRNVERVERDRRVREMAEKLGIAHLLDR--KPARLSGGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp CTTSCHHHHHHHHHHHHHTTTCTTTTTC--CGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred HHHcCCchHHHHHHHHHHHcCCHHHhcC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 12235677888988653222 2346999999999999999999999999999
No 219
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.96 E-value=3.1e-09 Score=99.56 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=80.6
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------------ccccccccccc----ch
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------------AVMTLPFAANI----DI 120 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------------~v~~~~~~t~i----~~ 120 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+..+++...+ .+
T Consensus 21 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv 100 (235)
T 3tif_A 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTA 100 (235)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCH
T ss_pred EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcH
Confidence 4455666778899999999999999999999999888877776655321 02222222111 01
Q ss_pred hh-------------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 121 RD-------------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 121 r~-------------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
++ ..++.++++.+++.... .-.....||+|++|++.+|+++..+++++|+|.|-
T Consensus 101 ~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPt 173 (235)
T 3tif_A 101 LENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF-ANHKPNQLSGGQQQRVAIARALANNPPIILADQPT 173 (235)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG-TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh-hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 11 12345678888875421 01223458999999999999999999999999993
No 220
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.96 E-value=1.6e-08 Score=98.43 Aligned_cols=155 Identities=16% Similarity=0.148 Sum_probs=89.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
..++.+|+|+|++|+||||++..|.+.....++++.+++.|+.-. ...-....+.+..++.. +..
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~----------~a~eqL~~~~~~~gl~~----~~~- 165 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA----------AAIEQLKIWGERVGATV----ISH- 165 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH----------HHHHHHHHHHHHHTCEE----ECC-
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH----------HHHHHHHHHHHHcCCcE----Eec-
Confidence 456789999999999999999999999877888898888774210 00011223444444321 111
Q ss_pred ccccccHHHHH---HHHHHHhcCCCEEEEcCCCcccccchhchHHHHHH---HHH---hcCCcEEEEEEeCCCCCCchhh
Q 014354 146 NLFTTKFDEVI---SLIERRADHLDYVLVDTPGQIEIFTWSASGAIITE---AFA---STFPTVVTYVVDTPRSANPMTF 216 (426)
Q Consensus 146 ~~ls~~~~~~~---~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~---~~~---~~~~d~vl~VVDa~~~~~~~~~ 216 (426)
.+++..+.+ .++.+...+++++|+||||.... .......+.. .+. ...++.+++|+|+..+ ...
T Consensus 166 --~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~--~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~---~~~ 238 (306)
T 1vma_A 166 --SEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHT--KKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG---QNG 238 (306)
T ss_dssp --STTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSC--HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH---HHH
T ss_pred --CCccCHHHHHHHHHHHHHhcCCCEEEEECCCchhh--HHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC---HHH
Confidence 123333333 45556678899999999996332 1211122222 221 1247889999999632 111
Q ss_pred hhhHHHHHHHHhhccCCeEEEEecCCCCCh
Q 014354 217 MSNMLYACSILYKTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 217 ~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~ 246 (426)
. .....+.+.-...-+|+||.|....
T Consensus 239 l----~~a~~~~~~~~i~gvVlTk~D~~~~ 264 (306)
T 1vma_A 239 L----VQAKIFKEAVNVTGIILTKLDGTAK 264 (306)
T ss_dssp H----HHHHHHHHHSCCCEEEEECGGGCSC
T ss_pred H----HHHHHHHhcCCCCEEEEeCCCCccc
Confidence 1 1111122222234678999997654
No 221
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.95 E-value=2.7e-09 Score=101.85 Aligned_cols=115 Identities=12% Similarity=0.147 Sum_probs=82.6
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc----chh---
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI----DIR--- 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i----~~r--- 121 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +..+++...+ .++
T Consensus 27 L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 106 (266)
T 4g1u_C 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVI 106 (266)
T ss_dssp EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHH
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHH
Confidence 44566667788999999999999999999999998888888877654311 1111111100 011
Q ss_pred -----------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhc------CCCEEEEcCCC
Q 014354 122 -----------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRAD------HLDYVLVDTPG 175 (426)
Q Consensus 122 -----------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~------~~~~~liDTPG 175 (426)
...++.++++.+++...... ....||+|++|++.+|+++.. +++++|+|.|-
T Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPt 175 (266)
T 4g1u_C 107 QMGRAPYGGSQDRQALQQVMAQTDCLALAQR--DYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPT 175 (266)
T ss_dssp HGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS--BGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCC
T ss_pred HhhhhhcCcHHHHHHHHHHHHHcCChhHhcC--CcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCcc
Confidence 12346778999998654322 224699999999999999998 99999999993
No 222
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.95 E-value=1.8e-10 Score=115.19 Aligned_cols=136 Identities=14% Similarity=0.070 Sum_probs=77.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l 148 (426)
...|+++|.+|+|||||+|+|++....... ..+.++..|++| ++.. ..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~------~~~~~~~~~gtT----~~~~-----------------~~----- 207 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETE------NVITTSHFPGTT----LDLI-----------------DI----- 207 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCS------SCCEEECCC--------CEE-----------------EE-----
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccc------cceecCCCCCee----cceE-----------------EE-----
Confidence 357999999999999999999997532100 001245556555 1111 00
Q ss_pred cccHHHHHHHHHHHhcCCCEEEEcCCCcccccc--hhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFT--WSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (426)
Q Consensus 149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~--~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~ 226 (426)
.-...+.++||||+..... .......+...+.....+.++|++++........+ ..+..
T Consensus 208 --------------~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l-----~~~d~ 268 (368)
T 3h2y_A 208 --------------PLDEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGL-----ARFDY 268 (368)
T ss_dssp --------------ESSSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTT-----EEEEE
T ss_pred --------------EecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcce-----EEEEE
Confidence 0112489999999977531 11122333333334557889999998432111110 00122
Q ss_pred HhhccCCeEEEEecCCCCChHhHHHHHHH
Q 014354 227 LYKTRLPLVLAFNKTDVAQHEFALEWMQD 255 (426)
Q Consensus 227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~ 255 (426)
+...+.|+++|+||+|.+.........+.
T Consensus 269 l~~~~~~~~~v~nk~d~~~~~~~~~~~~~ 297 (368)
T 3h2y_A 269 VSGGRRAFTCHFSNRLTIHRTKLEKADEL 297 (368)
T ss_dssp EESSSEEEEEEECTTSCEEEEEHHHHHHH
T ss_pred ecCCCceEEEEecCccccccccHHHHHHH
Confidence 34457899999999999987654444333
No 223
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.94 E-value=7.3e-10 Score=112.15 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=35.1
Q ss_pred EEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHH
Q 014354 200 VVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFE 257 (426)
Q Consensus 200 ~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~ 257 (426)
+++|++|+.+++...+ ..++..+. .+.|+|+|+||+|..++.++..+...+.
T Consensus 151 ~v~fI~d~~~~l~~~D-----ieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~ 202 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLD-----LVTMKKLD-SKVNIIPIIAKADAISKSELTKFKIKIT 202 (427)
T ss_dssp EEEEECCCC---CHHH-----HHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCCHHH-----HHHHHHHh-hCCCEEEEEcchhccchHHHHHHHHHHH
Confidence 4777888888877665 33444444 6889999999999999876655554444
No 224
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.94 E-value=3e-09 Score=98.85 Aligned_cols=115 Identities=12% Similarity=0.092 Sum_probs=80.8
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------cccccccccc----ch
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFAANI----DI 120 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~t~i----~~ 120 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++...+ .+
T Consensus 20 l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 99 (224)
T 2pcj_A 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTA 99 (224)
T ss_dssp EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCH
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCH
Confidence 34455666788899999999999999999999998877777766543311 1112221111 01
Q ss_pred hh----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 121 RD----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 121 r~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
++ ..++.++++.+++...... ....||+|+++++.+++++..+++++|+|.|=
T Consensus 100 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LSgGq~qrv~laral~~~p~lllLDEPt 168 (224)
T 2pcj_A 100 LENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSR--KPYELSGGEQQRVAIARALANEPILLFADEPT 168 (224)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC--CGGGSCHHHHHHHHHHHHTTTCCSEEEEESTT
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 11 1234567889998654322 23469999999999999999999999999993
No 225
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.90 E-value=2.2e-09 Score=99.17 Aligned_cols=114 Identities=11% Similarity=0.055 Sum_probs=80.2
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-----ccccccccc----------ccchh--
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-----AVMTLPFAA----------NIDIR-- 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-----~v~~~~~~t----------~i~~r-- 121 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+..+++.. ++...
T Consensus 25 l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~ 104 (214)
T 1sgw_A 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVAS 104 (214)
T ss_dssp EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHH
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHH
Confidence 3344555667889999999999999999999999887777776644321 111111111 11110
Q ss_pred ------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 122 ------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 122 ------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
...++.++++.+++... . .....||+|+++++.+++++..+++++|+|.|-
T Consensus 105 ~~~~~~~~~~~~~~l~~~gl~~~-~--~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 105 LYGVKVNKNEIMDALESVEVLDL-K--KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp HTTCCCCHHHHHHHHHHTTCCCT-T--SBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred hcCCchHHHHHHHHHHHcCCCcC-C--CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 12245678899998754 2 223468999999999999999999999999993
No 226
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.90 E-value=6.9e-09 Score=98.45 Aligned_cols=115 Identities=13% Similarity=0.074 Sum_probs=80.7
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccccc----chhh---
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----DIRD--- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i----~~r~--- 122 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +..+++...+ .+++
T Consensus 31 l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~ 110 (256)
T 1vpl_A 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLR 110 (256)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHH
T ss_pred EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHH
Confidence 44555667788899999999999999999999998887777766543311 1112221111 1111
Q ss_pred -------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 123 -------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
..++.++++.+++..... .....||+|+++++.+++++..+++++|+|.|-
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~--~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt 174 (256)
T 1vpl_A 111 FVAGFYASSSSEIEEMVERATEIAGLGEKIK--DRVSTYSKGMVRKLLIARALMVNPRLAILDEPT 174 (256)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG--SBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred HHHHHcCCChHHHHHHHHHHHHHCCCchHhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 123456788888864322 223468999999999999999999999999993
No 227
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.90 E-value=6.7e-09 Score=98.92 Aligned_cols=114 Identities=16% Similarity=0.171 Sum_probs=80.7
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc------------cccccccccc----chhh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------------VMTLPFAANI----DIRD 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~------------v~~~~~~t~i----~~r~ 122 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +..+++...+ .+++
T Consensus 40 L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e 119 (263)
T 2olj_A 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLN 119 (263)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHH
T ss_pred EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHH
Confidence 44566667788999999999999999999999998887777776553321 1112221110 0111
Q ss_pred -----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 123 -----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 123 -----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
..++.++++.+++..... .....||+|+++++.+++++..+++++|+|.|
T Consensus 120 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~--~~~~~LSgGqkQRv~lAraL~~~p~lllLDEP 186 (263)
T 2olj_A 120 NITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH--AYPDSLSGGQAQRVAIARALAMEPKIMLFDEP 186 (263)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT--SCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc--CChhhCCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 123456788888864322 22345899999999999999999999999999
No 228
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.89 E-value=8.4e-09 Score=97.66 Aligned_cols=115 Identities=15% Similarity=0.084 Sum_probs=77.8
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEE------EeccCcccc-ccccccccch-----------
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGY------VMNLDPAVM-TLPFAANIDI----------- 120 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~------i~~~d~~v~-~~~~~t~i~~----------- 120 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+. ++..++... ......++..
T Consensus 21 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~ 100 (253)
T 2nq2_C 21 FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK 100 (253)
T ss_dssp EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCC
T ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccC
Confidence 3344555667889999999999999999999999877655542 222222211 0000011111
Q ss_pred ---hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 121 ---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 121 ---r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
....++.++++.+++..... .....||+|+++++.+++++..+++++|+|.|-
T Consensus 101 ~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt 156 (253)
T 2nq2_C 101 PKSHDYQVAMQALDYLNLTHLAK--REFTSLSGGQRQLILIARAIASECKLILLDEPT 156 (253)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGTT--SBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSS
T ss_pred CCHHHHHHHHHHHHHcCChHHhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 11234567888998864322 223469999999999999999999999999993
No 229
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.89 E-value=5.3e-09 Score=99.56 Aligned_cols=115 Identities=17% Similarity=0.125 Sum_probs=80.6
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----------------------ccccccc
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------------------VMTLPFA 115 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----------------------v~~~~~~ 115 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +..+++.
T Consensus 22 l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~ 101 (262)
T 1b0u_A 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQH 101 (262)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSS
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecC
Confidence 44556667788999999999999999999999998887777766543321 1111221
Q ss_pred cc----------cch-h----------hhHHHHHHHHHcCCCCC-CCcccccccccccHHHHHHHHHHHhcCCCEEEEcC
Q 014354 116 AN----------IDI-R----------DTIRYKEVMKQFNLGPN-GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDT 173 (426)
Q Consensus 116 t~----------i~~-r----------~~~~~~~~~~~~~l~~n-g~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDT 173 (426)
.. +.. . ...++.++++.+++... .. .....||+|+++++.+++++..+++++|+|.
T Consensus 102 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~--~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 179 (262)
T 1b0u_A 102 FNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG--KYPVHLSGGQQQRVSIARALAMEPDVLLFDE 179 (262)
T ss_dssp CCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT--SCGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred cccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhc--CCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 11 111 0 01234567888887643 22 2234599999999999999999999999999
Q ss_pred CC
Q 014354 174 PG 175 (426)
Q Consensus 174 PG 175 (426)
|-
T Consensus 180 Pt 181 (262)
T 1b0u_A 180 PT 181 (262)
T ss_dssp TT
T ss_pred CC
Confidence 93
No 230
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.89 E-value=5.9e-09 Score=104.16 Aligned_cols=115 Identities=12% Similarity=0.075 Sum_probs=82.4
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------cccccccc----------ccch
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFAA----------NIDI 120 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~t----------~i~~ 120 (426)
..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+.. +..+++.. ++..
T Consensus 19 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~ 98 (381)
T 3rlf_A 19 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSF 98 (381)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTH
T ss_pred EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHH
Confidence 44566677788999999999999999999999998888777776554311 11111111 1111
Q ss_pred --h--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 121 --R--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 121 --r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+ ...++.++++.+++.....- ....||+|++|++.+++++..+++++|+|.|=
T Consensus 99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r--~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPt 161 (381)
T 3rlf_A 99 GLKLAGAKKEVINQRVNQVAEVLQLAHLLDR--KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (381)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCGGGTTC--CGGGSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhcC--ChhHCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 0 11245678899998754332 23469999999999999999999999999993
No 231
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.88 E-value=1e-08 Score=101.87 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=81.2
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------ccccccccc----------ccch
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------AVMTLPFAA----------NIDI 120 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------~v~~~~~~t----------~i~~ 120 (426)
..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+. .+..+++.. ++..
T Consensus 19 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~ 98 (362)
T 2it1_A 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAF 98 (362)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHH
T ss_pred EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHH
Confidence 3455566778889999999999999999999999888877777654331 011111111 1111
Q ss_pred --h------h--hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 121 --R------D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 121 --r------~--~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
+ . ..++.++++.+++.....- ....||+|++|++.+++++..+++++|+|.|
T Consensus 99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r--~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 160 (362)
T 2it1_A 99 PLELRKAPREEIDKKVREVAKMLHIDKLLNR--YPWQLSGGQQQRVAIARALVKEPEVLLLDEP 160 (362)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC--CGGGSCHHHHHHHHHHHHHTTCCSEEEEESG
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchHhhC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 0 0 1235678899998754332 2346999999999999999999999999999
No 232
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.87 E-value=9.8e-09 Score=101.94 Aligned_cols=114 Identities=16% Similarity=0.100 Sum_probs=81.0
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------ccccccccc----------ccch
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------AVMTLPFAA----------NIDI 120 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------~v~~~~~~t----------~i~~ 120 (426)
..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+. .+..+++.. ++..
T Consensus 19 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~ 98 (359)
T 2yyz_A 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAF 98 (359)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHG
T ss_pred EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHH
Confidence 3455666778889999999999999999999999888877777654331 011111111 1110
Q ss_pred --h--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 121 --R--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 121 --r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
+ ...++.++++.+++.....- ....||+|++|++.+++++..+++++|+|.|
T Consensus 99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r--~~~~LSgGq~QRvalArAL~~~P~lLLLDEP 160 (359)
T 2yyz_A 99 PLRARRISKDEVEKRVVEIARKLLIDNLLDR--KPTQLSGGQQQRVALARALVKQPKVLLFDEP 160 (359)
T ss_dssp GGSSSCSHHHHTTHHHHHHHHHTTCGGGTTS--CGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchHhcC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 0 01245678999998653222 2246999999999999999999999999999
No 233
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.86 E-value=6.4e-09 Score=99.90 Aligned_cols=114 Identities=12% Similarity=0.110 Sum_probs=80.3
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc------------cccccccc----------
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------------VMTLPFAA---------- 116 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~------------v~~~~~~t---------- 116 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +..+++..
T Consensus 37 L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv 116 (279)
T 2ihy_A 37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERV 116 (279)
T ss_dssp EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBH
T ss_pred EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCH
Confidence 44556667788899999999999999999999998888777777553321 11111111
Q ss_pred --ccch--------------hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 117 --NIDI--------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 117 --~i~~--------------r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
++.. ....++.++++.+++..... .....||+|+++++.+++++..+++++|+|.|
T Consensus 117 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEP 188 (279)
T 2ihy_A 117 IDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ--QYIGYLSTGEKQRVMIARALMGQPQVLILDEP 188 (279)
T ss_dssp HHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTT--SBGGGSCHHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred HHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhc--CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 1100 00123456788888754322 22346999999999999999999999999999
No 234
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.86 E-value=1.3e-08 Score=96.47 Aligned_cols=115 Identities=13% Similarity=0.115 Sum_probs=80.7
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-----------cccccccccc----------
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-----------AVMTLPFAAN---------- 117 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-----------~v~~~~~~t~---------- 117 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+...++...
T Consensus 23 l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~en 102 (257)
T 1g6h_A 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLEN 102 (257)
T ss_dssp EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHH
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHH
Confidence 4456666778889999999999999999999999888777776654321 0111121111
Q ss_pred cch--h---------------------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 118 IDI--R---------------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 118 i~~--r---------------------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
+.. . ...++.++++.+++..... .....||+|++|++.+++++..+++++|+|.|
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgGqkQrv~iAraL~~~p~lllLDEP 180 (257)
T 1g6h_A 103 LLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD--RKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180 (257)
T ss_dssp HHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTT--SBGGGSCHHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred HHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhC--CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 100 0 0123566788888764322 22346899999999999999999999999999
Q ss_pred C
Q 014354 175 G 175 (426)
Q Consensus 175 G 175 (426)
-
T Consensus 181 t 181 (257)
T 1g6h_A 181 I 181 (257)
T ss_dssp T
T ss_pred c
Confidence 3
No 235
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.85 E-value=9.1e-09 Score=101.96 Aligned_cols=114 Identities=16% Similarity=0.148 Sum_probs=80.2
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------ccccccccc----cchhh----
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFAAN----IDIRD---- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~t~----i~~r~---- 122 (426)
..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+.. +..+++... ..+++
T Consensus 31 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~ 110 (355)
T 1z47_A 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSF 110 (355)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHH
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHH
Confidence 34455666788899999999999999999999998888777766543310 111111110 00111
Q ss_pred ------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 123 ------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 123 ------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
..++.++++.+++.....- ....||+|++|++.+++++..+++++|+|.|
T Consensus 111 ~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r--~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 172 (355)
T 1z47_A 111 GLREKRVPKDEMDARVRELLRFMRLESYANR--FPHELSGGQQQRVALARALAPRPQVLLFDEP 172 (355)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCGGGTTS--CGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhHhcC--CcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1245678889988643222 2346999999999999999999999999999
No 236
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.85 E-value=1.2e-08 Score=100.97 Aligned_cols=114 Identities=11% Similarity=0.115 Sum_probs=81.8
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------ccccccccc----ccchhhh---
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------AVMTLPFAA----NIDIRDT--- 123 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------~v~~~~~~t----~i~~r~~--- 123 (426)
..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+. .+..+++.. ...+++.
T Consensus 16 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~ 95 (348)
T 3d31_A 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEF 95 (348)
T ss_dssp EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHH
T ss_pred EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHH
Confidence 4455566778889999999999999999999999888878777655331 011111111 1111111
Q ss_pred ----------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 124 ----------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 124 ----------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
.++.++++.+++...... ....||+|++|++.+++++..+++++|+|.|
T Consensus 96 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~--~~~~LSgGq~QRvalAraL~~~P~lLLLDEP 154 (348)
T 3d31_A 96 GMRMKKIKDPKRVLDTARDLKIEHLLDR--NPLTLSGGEQQRVALARALVTNPKILLLDEP 154 (348)
T ss_dssp HHHHHCCCCHHHHHHHHHHTTCTTTTTS--CGGGSCHHHHHHHHHHHHTTSCCSEEEEESS
T ss_pred HHHHcCCCHHHHHHHHHHHcCCchHhcC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 345678899998754332 2246999999999999999999999999999
No 237
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.85 E-value=1.1e-08 Score=102.15 Aligned_cols=114 Identities=15% Similarity=0.135 Sum_probs=80.5
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------cccccccc----------ccch
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFAA----------NIDI 120 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~t----------~i~~ 120 (426)
..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+.. +..+++.. ++..
T Consensus 27 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~ 106 (372)
T 1v43_A 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAF 106 (372)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHT
T ss_pred EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHH
Confidence 44556667788899999999999999999999998888777776543310 11111111 1100
Q ss_pred ----h----h--hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 121 ----R----D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 121 ----r----~--~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
+ . ..++.++++.+++.....- ....||+|++|++.+++++..+++++|+|.|
T Consensus 107 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r--~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 168 (372)
T 1v43_A 107 PLKIKKFPKDEIDKRVRWAAELLQIEELLNR--YPAQLSGGQRQRVAVARAIVVEPDVLLMDEP 168 (372)
T ss_dssp TCC--CCCHHHHHHHHHHHHHHTTCGGGTTS--CTTTCCSSCHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCChhHhcC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 0 0 1245678899988643222 2235899999999999999999999999999
No 238
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.84 E-value=1.9e-08 Score=95.74 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=80.0
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-------ccc-cccccccc--chhh------
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-------AVM-TLPFAANI--DIRD------ 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-------~v~-~~~~~t~i--~~r~------ 122 (426)
..+.+.... +.+++|+|++|||||||++.|+|.. +..+.+.+.+.+. .+. ..++...+ .+++
T Consensus 21 l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~ 98 (263)
T 2pjz_A 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYE 98 (263)
T ss_dssp EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHH
T ss_pred EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhh
Confidence 344555667 8899999999999999999999998 8877777655321 122 33332211 1111
Q ss_pred ------hHHHHHHHHHcCCC-CCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 123 ------TIRYKEVMKQFNLG-PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 123 ------~~~~~~~~~~~~l~-~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
..++.++++.+++. .... .....||+|+++++.+++++..+++++|+|.|-
T Consensus 99 ~~~~~~~~~~~~~l~~~gl~~~~~~--~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 156 (263)
T 2pjz_A 99 ELKGLDRDLFLEMLKALKLGEEILR--RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPF 156 (263)
T ss_dssp HHTCCCHHHHHHHHHHTTCCGGGGG--SBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT
T ss_pred hhcchHHHHHHHHHHHcCCChhHhc--CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 12356778888886 3222 223468999999999999999999999999993
No 239
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.83 E-value=4.6e-08 Score=95.71 Aligned_cols=164 Identities=16% Similarity=0.167 Sum_probs=86.3
Q ss_pred CCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCc
Q 014354 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGI 141 (426)
Q Consensus 62 ~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i 141 (426)
.+....++.+|+|+|++|+||||++..|.+.....++++.+++.|+.-. .. .. ....+.+ .....+-++
T Consensus 98 l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~----~a----~~--ql~~~~~-~~~~~~l~v 166 (320)
T 1zu4_A 98 IDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRA----GA----TQ--QLEEWIK-TRLNNKVDL 166 (320)
T ss_dssp CCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCH----HH----HH--HHHHHHT-TTSCTTEEE
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch----hH----HH--HHHHHHh-ccccCCceE
Confidence 4444567789999999999999999999999888889999988875211 00 00 0001110 000111112
Q ss_pred c-ccc-ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHH---HHHH---hcCCcEEEEEEeCCCCCCc
Q 014354 142 L-TSL-NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIIT---EAFA---STFPTVVTYVVDTPRSANP 213 (426)
Q Consensus 142 ~-~~~-~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~---~~~~---~~~~d~vl~VVDa~~~~~~ 213 (426)
+ ... ..... ..-.-.+..+...+++++||||||..... ......+. ..+. ...+|.+++|+++..+
T Consensus 167 ip~~~~~~~p~-~~~~~~l~~~~~~~yD~VIIDTpg~l~~~--~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--- 240 (320)
T 1zu4_A 167 VKANKLNADPA-SVVFDAIKKAKEQNYDLLLIDTAGRLQNK--TNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--- 240 (320)
T ss_dssp ECCSSTTCCHH-HHHHHHHHHHHHTTCSEEEEECCCCGGGH--HHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT---
T ss_pred EeCCCCCCCHH-HHHHHHHHHHHhcCCCEEEEcCCCccccc--HHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc---
Confidence 2 100 00010 01111233334578999999999985531 11111111 1121 2347899999999743
Q ss_pred hhhhhhHHHHHHHHhhccCCeEEEEecCCCCCh
Q 014354 214 MTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 214 ~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~ 246 (426)
...+ .....+...-...=+|+||+|....
T Consensus 241 ~~~l----~~~~~~~~~~~i~GvVltk~d~~~~ 269 (320)
T 1zu4_A 241 QNGV----IQAEEFSKVADVSGIILTKMDSTSK 269 (320)
T ss_dssp HHHH----HHHHHHTTTSCCCEEEEECGGGCSC
T ss_pred HHHH----HHHHHHhhcCCCcEEEEeCCCCCCc
Confidence 1211 1111122111123488999997543
No 240
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.83 E-value=1.1e-08 Score=95.95 Aligned_cols=115 Identities=12% Similarity=0.129 Sum_probs=77.9
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----------cccccccccc----chhh-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------VMTLPFAANI----DIRD- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----------v~~~~~~t~i----~~r~- 122 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++...+ .+++
T Consensus 22 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 101 (240)
T 1ji0_A 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYEN 101 (240)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHH
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHH
Confidence 34455566788899999999999999999999998877777766543310 1122221110 0011
Q ss_pred --------------hHHHHHHHHHcC-CCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 123 --------------TIRYKEVMKQFN-LGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 123 --------------~~~~~~~~~~~~-l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
...+.++++.++ +..... .....||+|+++++.+++++..+++++|+|.|-
T Consensus 102 l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~--~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt 167 (240)
T 1ji0_A 102 LMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLK--QLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPS 167 (240)
T ss_dssp HHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTT--SBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTT
T ss_pred HHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 113455677773 543222 123358999999999999999999999999993
No 241
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.81 E-value=1.3e-08 Score=100.90 Aligned_cols=114 Identities=18% Similarity=0.087 Sum_probs=80.0
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccc---------
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAA--------- 116 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t--------- 116 (426)
..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+.. +..+++..
T Consensus 21 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~ 100 (353)
T 1oxx_K 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAF 100 (353)
T ss_dssp EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHH
T ss_pred EeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHH
Confidence 34556667788899999999999999999999998887777766442210 11111111
Q ss_pred -ccch--h--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 117 -NIDI--R--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 117 -~i~~--r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
++.. + ...++.++++.+++...... ....||+|++|++.+++++..+++++|+|.|
T Consensus 101 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~--~~~~LSGGq~QRvalAraL~~~P~lLLLDEP 167 (353)
T 1oxx_K 101 ENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH--FPRELSGAQQQRVALARALVKDPSLLLLDEP 167 (353)
T ss_dssp HHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTS--CGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcC--ChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 1110 0 01245678899988653222 2346999999999999999999999999999
No 242
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.81 E-value=1.6e-08 Score=96.41 Aligned_cols=115 Identities=12% Similarity=0.062 Sum_probs=80.0
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-------cccccccc--------c---ccch
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-------AVMTLPFA--------A---NIDI 120 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-------~v~~~~~~--------t---~i~~ 120 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+...++. + ++..
T Consensus 23 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~ 102 (266)
T 2yz2_A 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAF 102 (266)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHH
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHH
Confidence 3445566778889999999999999999999999877777776654321 01111111 0 1111
Q ss_pred ------hh---hHHHHHHHHHcCCC--CCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 121 ------RD---TIRYKEVMKQFNLG--PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 121 ------r~---~~~~~~~~~~~~l~--~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.. ..++.++++.+++. .... .....||+|+++++.+++++..+++++|+|.|-
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt 166 (266)
T 2yz2_A 103 AVKNFYPDRDPVPLVKKAMEFVGLDFDSFKD--RVPFFLSGGEKRRVAIASVIVHEPDILILDEPL 166 (266)
T ss_dssp TTTTTCTTSCSHHHHHHHHHHTTCCHHHHTT--CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred HHHhcCCHHHHHHHHHHHHHHcCcCCccccc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 00 12356788899886 3222 122358999999999999999999999999993
No 243
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.80 E-value=1.9e-08 Score=100.49 Aligned_cols=114 Identities=17% Similarity=0.130 Sum_probs=79.7
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------cccccccc--------
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFAA-------- 116 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~t-------- 116 (426)
..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+.. +..+++..
T Consensus 19 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv 98 (372)
T 1g29_1 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTV 98 (372)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCH
T ss_pred EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCH
Confidence 34455666788899999999999999999999998887777766443210 11111111
Q ss_pred --ccch--h------h--hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 117 --NIDI--R------D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 117 --~i~~--r------~--~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
++.. + . ..++.++++.+++.....- ....||+|++|++.+++++..+++++|+|.|
T Consensus 99 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r--~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 166 (372)
T 1g29_1 99 YDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR--KPRELSGGQRQRVALGRAIVRKPQVFLMDEP 166 (372)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC--CGGGSCHHHHHHHHHHHHHHTCCSEEEEECT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC--CcccCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 1110 0 0 1235677888988653322 2246999999999999999999999999999
No 244
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.79 E-value=8.6e-08 Score=97.15 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=85.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
++.+|+++|++|+||||++..|.+.....++++.+++.|+.-. .. .. ....+.+..++.. +....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~----aa----~~--qL~~~~~~~gv~v----~~~~~- 161 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP----AA----RE--QLRLLGEKVGVPV----LEVMD- 161 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCH----HH----HH--HHHHHHHHHTCCE----EECCT-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCc----hh----HH--HHHHhcccCCccE----EecCC-
Confidence 6778999999999999999999999888899999988875321 00 00 0111122333221 11000
Q ss_pred ccccHHHH-HHHH-HHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 148 FTTKFDEV-ISLI-ERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 148 ls~~~~~~-~~~~-~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
-... ..+ .... .+...+++++||||||..... ..+...+........++.+++|+|+..+. ... ..+.
T Consensus 162 ~~~p-~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d--~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av----~~a~ 231 (425)
T 2ffh_A 162 GESP-ESIRRRVEEKARLEARDLILVDTAGRLQID--EPLMGELARLKEVLGPDEVLLVLDAMTGQ---EAL----SVAR 231 (425)
T ss_dssp TCCH-HHHHHHHHHHHHHTTCSEEEEECCCCSSCC--HHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHH----HHHH
T ss_pred CCCH-HHHHHHHHHHHHHCCCCEEEEcCCCccccc--HHHHHHHHHhhhccCCceEEEEEeccchH---HHH----HHHH
Confidence 0000 111 1111 222467999999999975431 11122222233334588999999997542 211 1112
Q ss_pred HHhhccCC-eEEEEecCCCCCh
Q 014354 226 ILYKTRLP-LVLAFNKTDVAQH 246 (426)
Q Consensus 226 ~l~~~~~P-~IlVlNKiDl~~~ 246 (426)
.+.. ..+ .-+|+||+|....
T Consensus 232 ~f~~-~l~i~GVIlTKlD~~~~ 252 (425)
T 2ffh_A 232 AFDE-KVGVTGLVLTKLDGDAR 252 (425)
T ss_dssp HHHH-HTCCCEEEEESGGGCSS
T ss_pred HHHh-cCCceEEEEeCcCCccc
Confidence 1221 233 5679999997643
No 245
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.78 E-value=1.4e-08 Score=95.89 Aligned_cols=113 Identities=19% Similarity=0.124 Sum_probs=78.6
Q ss_pred CCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc----chhh---
Q 014354 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI----DIRD--- 122 (426)
Q Consensus 60 ~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i----~~r~--- 122 (426)
.+.+....++.+++|+|++|||||||++.|+|...+. +.+.+.+.+.. +...++...+ .+++
T Consensus 17 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 95 (249)
T 2qi9_C 17 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLT 95 (249)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHH
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHH
Confidence 3445556678899999999999999999999998777 77766543210 1111211110 1111
Q ss_pred --------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCC-------EEEEcCCC
Q 014354 123 --------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLD-------YVLVDTPG 175 (426)
Q Consensus 123 --------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~-------~~liDTPG 175 (426)
..++.++++.+++..... .....||+|+++++.+++++..+++ ++|+|.|-
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPt 161 (249)
T 2qi9_C 96 LHQHDKTRTELLNDVAGALALDDKLG--RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPM 161 (249)
T ss_dssp TTCSSTTCHHHHHHHHHHTTCGGGTT--SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTT
T ss_pred HhhccCCcHHHHHHHHHHcCChhHhc--CChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCc
Confidence 234567888888864322 2234699999999999999999999 99999993
No 246
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.78 E-value=5.8e-09 Score=97.80 Aligned_cols=117 Identities=17% Similarity=0.183 Sum_probs=72.5
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEec------cCccccccccccccchh---hhHHHHHH
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN------LDPAVMTLPFAANIDIR---DTIRYKEV 129 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~------~d~~v~~~~~~t~i~~r---~~~~~~~~ 129 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+ .+|.........++... ......++
T Consensus 21 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~ 100 (237)
T 2cbz_A 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSV 100 (237)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHH
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHH
Confidence 3445566778889999999999999999999999877766665432 22211000000011100 00112233
Q ss_pred HHHc------CCCCCCC---cccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 130 MKQF------NLGPNGG---ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 130 ~~~~------~l~~ng~---i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.+.+ ++.+.+- +-.....||+|+++++.+++++..+++++|+|.|-
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 155 (237)
T 2cbz_A 101 IQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 155 (237)
T ss_dssp HHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred HHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 3333 3222110 11223458999999999999999999999999993
No 247
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.77 E-value=1.7e-08 Score=94.84 Aligned_cols=116 Identities=9% Similarity=-0.036 Sum_probs=79.8
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------cccccccccc---------cc
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAAN---------ID 119 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~---------i~ 119 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+..+++... +.
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~ 97 (243)
T 1mv5_A 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLT 97 (243)
T ss_dssp EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTT
T ss_pred EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHh
Confidence 3445566778899999999999999999999999888888887755431 1122222211 11
Q ss_pred hh-----hhHHHHHHHHHcCCCCCCCcc---------cccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 120 IR-----DTIRYKEVMKQFNLGPNGGIL---------TSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 120 ~r-----~~~~~~~~~~~~~l~~ng~i~---------~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
.. ....+.++++.+++....... .....||+|+++++.+++++..+++++|+|.|
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEP 166 (243)
T 1mv5_A 98 YGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEA 166 (243)
T ss_dssp SCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred hhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 10 112345667777765432111 11235899999999999999999999999999
No 248
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.77 E-value=1.4e-07 Score=91.15 Aligned_cols=155 Identities=18% Similarity=0.140 Sum_probs=86.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
++.+++++|++|+||||++..|.+.....++++.+++.|+.-. .. . .....+.+..++..-.+ ....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~---~~-----~--~ql~~~~~~~~l~~~~~---~~~~ 163 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP---AA-----R--EQLRLLGEKVGVPVLEV---MDGE 163 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH---HH-----H--HHHHHHHHHHTCCEEEC---CTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH---hH-----H--HHHHHhcccCCeEEEEc---CCCC
Confidence 6779999999999999999999999888889999988875321 00 0 01112333444321100 0000
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l 227 (426)
-...+ .+..+..+...+++++|+||||..... ......+........++.+++|+|+..+ .... .....+
T Consensus 164 ~p~~l-~~~~l~~~~~~~~D~viiDtpp~~~~d--~~~~~~l~~~~~~~~~~~~~lv~~~~~~---~~~~----~~~~~~ 233 (295)
T 1ls1_A 164 SPESI-RRRVEEKARLEARDLILVDTAGRLQID--EPLMGELARLKEVLGPDEVLLVLDAMTG---QEAL----SVARAF 233 (295)
T ss_dssp CHHHH-HHHHHHHHHHHTCCEEEEECCCCSSCC--HHHHHHHHHHHHHHCCSEEEEEEEGGGT---HHHH----HHHHHH
T ss_pred CHHHH-HHHHHHHHHhCCCCEEEEeCCCCcccc--HHHHHHHHHHhhhcCCCEEEEEEeCCCc---HHHH----HHHHHH
Confidence 01111 122333333467999999999875431 1111222223333357888999998642 2211 111212
Q ss_pred hhccCC-eEEEEecCCCCCh
Q 014354 228 YKTRLP-LVLAFNKTDVAQH 246 (426)
Q Consensus 228 ~~~~~P-~IlVlNKiDl~~~ 246 (426)
.. ..+ .-+|+||+|....
T Consensus 234 ~~-~~~i~givlnk~d~~~~ 252 (295)
T 1ls1_A 234 DE-KVGVTGLVLTKLDGDAR 252 (295)
T ss_dssp HH-HTCCCEEEEECGGGCSS
T ss_pred hh-cCCCCEEEEECCCCCcc
Confidence 21 233 4589999997643
No 249
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.76 E-value=7.1e-09 Score=100.81 Aligned_cols=117 Identities=13% Similarity=0.071 Sum_probs=77.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhhH-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDTI- 124 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~~- 124 (426)
..+.+...+++.+++|+|++|||||||++.|++...+..+.+.+.+.+. .+..+++.+.+ .+++.+
T Consensus 70 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~ 149 (306)
T 3nh6_A 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIR 149 (306)
T ss_dssp EEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHH
T ss_pred eeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHH
Confidence 4455666788899999999999999999999999888877777765442 12222222211 122222
Q ss_pred ---------HHHHHHHHcCCCCC-----CCc----ccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 125 ---------RYKEVMKQFNLGPN-----GGI----LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 125 ---------~~~~~~~~~~l~~n-----g~i----~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.+.++++..++... .|. -.....||+|++|++.+|+++..+++++|+|.|-
T Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPt 218 (306)
T 3nh6_A 150 YGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEAT 218 (306)
T ss_dssp TTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred hhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 22333444333210 011 1111358999999999999999999999999993
No 250
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.75 E-value=2e-07 Score=90.50 Aligned_cols=155 Identities=19% Similarity=0.165 Sum_probs=83.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc-ccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT-SLN 146 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~-~~~ 146 (426)
++.+|+|+|++|||||||++.|.+...+.++.+.+.+.|..-. .. + . ....+..+.++ +++. ...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~----~a-~---~--ql~~~~~~~~i----~~v~q~~~ 166 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRA----AG-G---T--QLSEWGKRLSI----PVIQGPEG 166 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSST----TT-T---H--HHHHHHHHHTC----CEECCCTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCCh----hH-H---H--HHHHHHHhcCc----eEEEeCCC
Confidence 5679999999999999999999999988899999888774210 00 0 0 00011111111 1111 000
Q ss_pred cccc-cHHHHHHHHHHHhcCCCEEEEcCCCcccccch--hchHHHHHHHHHh---cCCcEEEEEEeCCCCCCchhhhhhH
Q 014354 147 LFTT-KFDEVISLIERRADHLDYVLVDTPGQIEIFTW--SASGAIITEAFAS---TFPTVVTYVVDTPRSANPMTFMSNM 220 (426)
Q Consensus 147 ~ls~-~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~--~~~~~~l~~~~~~---~~~d~vl~VVDa~~~~~~~~~~~~~ 220 (426)
.+.. ...+.+. .+...+++++++||+|....... ..+. .....++. ..++.+++++|+..+.....
T Consensus 167 ~~p~~~v~~~v~--~~~~~~~d~~llDt~G~~~~~~~~~~eLs-~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~----- 238 (304)
T 1rj9_A 167 TDSAALAYDAVQ--AMKARGYDLLFVDTAGRLHTKHNLMEELK-KVKRAIAKADPEEPKEVWLVLDAVTGQNGLE----- 238 (304)
T ss_dssp CCHHHHHHHHHH--HHHHHTCSEEEECCCCCCTTCHHHHHHHH-HHHHHHHHHCTTCCSEEEEEEETTBCTHHHH-----
T ss_pred CCHHHHHHHHHH--HHHhCCCCEEEecCCCCCCchHHHHHHHH-HHHHHHHHhhcCCCCeEEEEEcHHHHHHHHH-----
Confidence 0110 1111122 22234678999999998543211 1111 11122222 34788889999876543222
Q ss_pred HHHHHHHhhccCCeEEEEecCCCCCh
Q 014354 221 LYACSILYKTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 221 l~~~~~l~~~~~P~IlVlNKiDl~~~ 246 (426)
.+..+.+..-..+|++||.|....
T Consensus 239 --~~~~~~~~~~~t~iivTh~d~~a~ 262 (304)
T 1rj9_A 239 --QAKKFHEAVGLTGVIVTKLDGTAK 262 (304)
T ss_dssp --HHHHHHHHHCCSEEEEECTTSSCC
T ss_pred --HHHHHHHHcCCcEEEEECCccccc
Confidence 112222222346889999997643
No 251
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.74 E-value=1e-08 Score=95.64 Aligned_cols=115 Identities=19% Similarity=0.167 Sum_probs=72.4
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEec------cCcccccccccc--ccchh---hhHHHH
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN------LDPAVMTLPFAA--NIDIR---DTIRYK 127 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~------~d~~v~~~~~~t--~i~~r---~~~~~~ 127 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+ .+|.. ++.+. ++... ...++.
T Consensus 24 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~--~~~tv~enl~~~~~~~~~~~~ 101 (229)
T 2pze_A 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI--MPGTIKENIIFGVSYDEYRYR 101 (229)
T ss_dssp EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCC--CSBCHHHHHHTTSCCCHHHHH
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcc--cCCCHHHHhhccCCcChHHHH
Confidence 3345556678889999999999999999999999877766665432 22221 11110 11110 011223
Q ss_pred HHHHHcCCC------CCCC---cccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 128 EVMKQFNLG------PNGG---ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 128 ~~~~~~~l~------~ng~---i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
++++.+++. +.+. +-.....||+|+++++.+++++..+++++|+|.|-
T Consensus 102 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt 158 (229)
T 2pze_A 102 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 158 (229)
T ss_dssp HHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred HHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 333433332 1110 00112358999999999999999999999999994
No 252
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.72 E-value=2.9e-08 Score=94.92 Aligned_cols=115 Identities=15% Similarity=0.115 Sum_probs=75.4
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc---chhhhH-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI---DIRDTI- 124 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i---~~r~~~- 124 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +..+++...+ .+++.+
T Consensus 35 l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~ 114 (271)
T 2ixe_A 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIA 114 (271)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHH
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHh
Confidence 44556667788899999999999999999999998887777766543310 1112221110 011111
Q ss_pred -------------------HHHHHHHHc--CCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 125 -------------------RYKEVMKQF--NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 125 -------------------~~~~~~~~~--~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.+.++++.+ ++....+ .....||+|+++++.+++++..+++++|+|.|-
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~--~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt 184 (271)
T 2ixe_A 115 YGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVG--ETGNQLSGGQRQAVALARALIRKPRLLILDNAT 184 (271)
T ss_dssp TTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCC--GGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred hhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhc--CCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 112334444 3322111 122358999999999999999999999999993
No 253
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.71 E-value=3.1e-08 Score=94.51 Aligned_cols=115 Identities=12% Similarity=0.014 Sum_probs=76.2
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHccc--ccCCceEEEeccCcc-----------ccccccccc--------
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHT--QSRNIRGYVMNLDPA-----------VMTLPFAAN-------- 117 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~--~~~~~~~~i~~~d~~-----------v~~~~~~t~-------- 117 (426)
..+.+....++.+++|+|++|||||||++.|+|.. .+..+.+.+.+.+.. +...++...
T Consensus 36 l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~ 115 (267)
T 2zu0_C 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQ 115 (267)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHH
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHH
Confidence 44556667788899999999999999999999973 344555555443210 111111111
Q ss_pred --cch-h---------------h-hHHHHHHHHHcCCCC-CCCcccccc-cccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 118 --IDI-R---------------D-TIRYKEVMKQFNLGP-NGGILTSLN-LFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 118 --i~~-r---------------~-~~~~~~~~~~~~l~~-ng~i~~~~~-~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+.. . + ..++.++++.+++.. .... ... .||+|+++++.+++++..+++++|+|.|-
T Consensus 116 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPt 192 (267)
T 2zu0_C 116 FFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTR--SVNVGFSGGEKKRNDILQMAVLEPELCILDESD 192 (267)
T ss_dssp HHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTS--BTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred HHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcC--CcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 000 0 0 123556788888853 2111 112 38999999999999999999999999993
No 254
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.71 E-value=2.1e-08 Score=94.56 Aligned_cols=117 Identities=15% Similarity=0.044 Sum_probs=76.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc---chhhh--
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI---DIRDT-- 123 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i---~~r~~-- 123 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +..+++...+ .+++.
T Consensus 25 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~ 104 (247)
T 2ff7_A 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNIS 104 (247)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHT
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHh
Confidence 34455666788899999999999999999999998887777776553311 1112221111 01111
Q ss_pred --------HHHHHHHHHcCCCCCC-----C----cccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 124 --------IRYKEVMKQFNLGPNG-----G----ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 124 --------~~~~~~~~~~~l~~ng-----~----i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
..+.++++.+++.... | +-.....||+|+++++.+++++..+++++|+|.|-
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPt 173 (247)
T 2ff7_A 105 LANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEAT 173 (247)
T ss_dssp TTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred ccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1233445555543110 0 01112358999999999999999999999999993
No 255
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.70 E-value=8e-08 Score=92.99 Aligned_cols=151 Identities=18% Similarity=0.123 Sum_probs=82.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHccccc-CCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS-RNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~-~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
.++.+++|+|++||||||++..|.+.... .|.++.++..|+.- + +. .+. ...+.+.+++... ..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r---~-~a----~eq--L~~~~~~~gl~~~----~~- 167 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR---I-AA----VEQ--LKTYAELLQAPLE----VC- 167 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS---T-TH----HHH--HHHHHTTTTCCCC----BC-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc---c-hH----HHH--HHHHHHhcCCCeE----ec-
Confidence 35679999999999999999999998875 56788888887631 0 10 111 1111222222111 00
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~ 225 (426)
... .. +..+-+...+++++|+||||..... ......+...+....++-+++|+|+.++.... ..++.
T Consensus 168 ---~~~-~~-l~~al~~~~~~dlvIiDT~G~~~~~--~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~------~~~~~ 234 (296)
T 2px0_A 168 ---YTK-EE-FQQAKELFSEYDHVFVDTAGRNFKD--PQYIDELKETIPFESSIQSFLVLSATAKYEDM------KHIVK 234 (296)
T ss_dssp ---SSH-HH-HHHHHHHGGGSSEEEEECCCCCTTS--HHHHHHHHHHSCCCTTEEEEEEEETTBCHHHH------HHHTT
T ss_pred ---CCH-HH-HHHHHHHhcCCCEEEEeCCCCChhh--HHHHHHHHHHHhhcCCCeEEEEEECCCCHHHH------HHHHH
Confidence 011 11 1122223467999999999985431 11111222222222367789999987543211 11122
Q ss_pred HHhhccCCeEEEEecCCCCCh
Q 014354 226 ILYKTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 226 ~l~~~~~P~IlVlNKiDl~~~ 246 (426)
.+...+ ..-+|+||+|....
T Consensus 235 ~~~~l~-~~giVltk~D~~~~ 254 (296)
T 2px0_A 235 RFSSVP-VNQYIFTKIDETTS 254 (296)
T ss_dssp TTSSSC-CCEEEEECTTTCSC
T ss_pred HHhcCC-CCEEEEeCCCcccc
Confidence 222222 24577899997754
No 256
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.69 E-value=2.3e-08 Score=94.40 Aligned_cols=114 Identities=12% Similarity=0.033 Sum_probs=72.6
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcc--cccCCceEEEeccCcc-----------cccccccccc----chh
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCH--TQSRNIRGYVMNLDPA-----------VMTLPFAANI----DIR 121 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~--~~~~~~~~~i~~~d~~-----------v~~~~~~t~i----~~r 121 (426)
..+.+....++.+++|+|++|||||||++.|+|. ..+..+.+.+.+.+.. +...++...+ .++
T Consensus 19 l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 98 (250)
T 2d2e_A 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIA 98 (250)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHH
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHH
Confidence 3445556678889999999999999999999997 4556666666543310 1112222111 001
Q ss_pred h-------------------hHHHHHHHHHcCCC-CCCCccccccc-ccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 122 D-------------------TIRYKEVMKQFNLG-PNGGILTSLNL-FTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 122 ~-------------------~~~~~~~~~~~~l~-~ng~i~~~~~~-ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
+ ..++.++++.+++. .... ..... ||+|++|++.+++++..+++++|+|.|
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~--~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEP 170 (250)
T 2d2e_A 99 NFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS--RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDET 170 (250)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG--SBTTCC----HHHHHHHHHHHHHCCSEEEEECG
T ss_pred HHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhc--CCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1 11345678888874 2111 12234 899999999999999999999999999
No 257
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.67 E-value=5.8e-07 Score=87.15 Aligned_cols=160 Identities=21% Similarity=0.179 Sum_probs=85.3
Q ss_pred CCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCc
Q 014354 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGI 141 (426)
Q Consensus 62 ~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i 141 (426)
.+....++.+++|+|++|||||||++.|++...+.++.+.+.+.|..-. .. .+ ....+-.+.++ ++
T Consensus 93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~----~a----~~--ql~~~~~~~~i----~~ 158 (302)
T 3b9q_A 93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRA----AA----SD--QLEIWAERTGC----EI 158 (302)
T ss_dssp CCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCH----HH----HH--HHHHHHHHHTC----EE
T ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccch----hH----HH--HHHHHHHhcCc----eE
Confidence 3444567889999999999999999999999888888888887663210 00 00 00001011111 11
Q ss_pred cc-ccc-ccc-ccHHHHHHHHHHHhcCCCEEEEcCCCcccccch--hchHHHHHHHHHh---cCCcEEEEEEeCCCCCCc
Q 014354 142 LT-SLN-LFT-TKFDEVISLIERRADHLDYVLVDTPGQIEIFTW--SASGAIITEAFAS---TFPTVVTYVVDTPRSANP 213 (426)
Q Consensus 142 ~~-~~~-~ls-~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~--~~~~~~l~~~~~~---~~~d~vl~VVDa~~~~~~ 213 (426)
+. ... .+. ....+.+..+ ...+.+..++||+|....... ..+.. ....++. ..++-+++|+|++.+.+.
T Consensus 159 v~q~~~~~~~~~~v~e~l~~~--~~~~~d~~lldt~gl~~~~~~~~~eLSk-qr~~iaral~~~P~e~lLvLDptsglD~ 235 (302)
T 3b9q_A 159 VVAEGDKAKAATVLSKAVKRG--KEEGYDVVLCDTSGRLHTNYSLMEELIA-CKKAVGKIVSGAPNEILLVLDGNTGLNM 235 (302)
T ss_dssp ECCC--CCCHHHHHHHHHHHH--HHTTCSEEEECCCCCSSCCHHHHHHHHH-HHHHHHTTSTTCCSEEEEEEEGGGGGGG
T ss_pred EEecCCccCHHHHHHHHHHHH--HHcCCcchHHhcCCCCcchhHHHHHHHH-HHHHHHHhhccCCCeeEEEEeCCCCcCH
Confidence 11 000 011 0111222222 234578899999998653211 11111 1112222 236777889997777665
Q ss_pred hhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354 214 MTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 214 ~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~ 245 (426)
.... ..+.+..-..+|+++|.|-..
T Consensus 236 ~~~~-------~~~~~~~g~t~iiiThlD~~~ 260 (302)
T 3b9q_A 236 LPQA-------REFNEVVGITGLILTKLDGSA 260 (302)
T ss_dssp HHHH-------HHHHHHTCCCEEEEECCSSCS
T ss_pred HHHH-------HHHHHhcCCCEEEEeCCCCCC
Confidence 4321 222222223578899998764
No 258
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.63 E-value=5.4e-08 Score=92.43 Aligned_cols=116 Identities=15% Similarity=0.016 Sum_probs=74.0
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhh--
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDT-- 123 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~-- 123 (426)
..+.+....++.+++|+|++|||||||++.|+|...+ .+.+.+.+.+. .+..+++...+ .+++.
T Consensus 36 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~ 114 (260)
T 2ghi_A 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNIL 114 (260)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHH
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHh
Confidence 3445566778889999999999999999999998754 56665544321 11222222111 11111
Q ss_pred --------HHHHHHHHHcCCCCC-----CCc----ccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 124 --------IRYKEVMKQFNLGPN-----GGI----LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 124 --------~~~~~~~~~~~l~~n-----g~i----~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
..+.++++.+++... .+. -.....||+|+++++.+++++..+++++|+|.|-
T Consensus 115 ~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 183 (260)
T 2ghi_A 115 YGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEAT 183 (260)
T ss_dssp TTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCC
T ss_pred ccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 123344555554210 010 0112358999999999999999999999999993
No 259
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.62 E-value=6e-08 Score=102.96 Aligned_cols=79 Identities=16% Similarity=0.116 Sum_probs=44.0
Q ss_pred CCCEEEEcCCCcccccch--h-chHHHHHHHHHh---cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEE
Q 014354 165 HLDYVLVDTPGQIEIFTW--S-ASGAIITEAFAS---TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAF 238 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~--~-~~~~~l~~~~~~---~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVl 238 (426)
.++++|+|+||+....+. . .....+.+.+.. ....++++++++........ .+..+..+...+.+.|+|+
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~----~l~la~~v~~~g~rtI~Vl 221 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTE----ALSMAQEVDPEGDRTIGIL 221 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCH----HHHHHHHHCSSCCSEEEEE
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHH----HHHHHHHHhhcCCceEEEe
Confidence 478999999998663211 1 112333444333 23457777777543332211 2334444556678999999
Q ss_pred ecCCCCChH
Q 014354 239 NKTDVAQHE 247 (426)
Q Consensus 239 NKiDl~~~~ 247 (426)
||+|++...
T Consensus 222 TK~Dlv~~g 230 (608)
T 3szr_A 222 TKPDLVDKG 230 (608)
T ss_dssp ECGGGSSSS
T ss_pred cchhhcCcc
Confidence 999998754
No 260
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.61 E-value=9.7e-07 Score=87.55 Aligned_cols=161 Identities=20% Similarity=0.181 Sum_probs=86.1
Q ss_pred CCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCc
Q 014354 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGI 141 (426)
Q Consensus 62 ~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i 141 (426)
.+....++.+++|+|++|||||||++.|.+...+.++.+.+.+.|..-. .. .+ ....+-.+.++ ++
T Consensus 150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~----~a----~e--ql~~~~~r~~i----~~ 215 (359)
T 2og2_A 150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRA----AA----SD--QLEIWAERTGC----EI 215 (359)
T ss_dssp CCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCH----HH----HH--HHHHHHHHHTC----EE
T ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccccccc----ch----hH--HHHHHHHhcCe----EE
Confidence 3444567889999999999999999999999888888888887663210 00 00 00001111111 11
Q ss_pred ccc-cc-ccc-ccHHHHHHHHHHHhcCCCEEEEcCCCcccccch--hchHHHHHHHHHh---cCCcEEEEEEeCCCCCCc
Q 014354 142 LTS-LN-LFT-TKFDEVISLIERRADHLDYVLVDTPGQIEIFTW--SASGAIITEAFAS---TFPTVVTYVVDTPRSANP 213 (426)
Q Consensus 142 ~~~-~~-~ls-~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~--~~~~~~l~~~~~~---~~~d~vl~VVDa~~~~~~ 213 (426)
+.. .. .+. ....+.+..+ ...+.+++++||+|....... ..+.. ....+.. ..++-+++|+|++.+.+.
T Consensus 216 v~q~~~~~~p~~tv~e~l~~~--~~~~~d~~lldt~Gl~~~~~~~~~eLSk-qr~~iaral~~~P~e~lLvLDpttglD~ 292 (359)
T 2og2_A 216 VVAEGDKAKAATVLSKAVKRG--KEEGYDVVLCDTSGRLHTNYSLMEELIA-CKKAVGKIVSGAPNEILLVLDGNTGLNM 292 (359)
T ss_dssp ECCSSSSCCHHHHHHHHHHHH--HHTTCSEEEEECCCCSSCCHHHHHHHHH-HHHHHHHHSTTCCSEEEEEEEGGGGGGG
T ss_pred EEecccccChhhhHHHHHHHH--HhCCCHHHHHHhcCCChhhhhHHHHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCCH
Confidence 110 00 011 0111222222 234578899999998654211 11111 1111221 336778899997776665
Q ss_pred hhhhhhHHHHHHHHhhccCCeEEEEecCCCCCh
Q 014354 214 MTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 214 ~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~ 246 (426)
.... ..+.+..-..+|+++|.|....
T Consensus 293 ~~~~-------~~~~~~~g~t~iiiThlD~~~~ 318 (359)
T 2og2_A 293 LPQA-------REFNEVVGITGLILTKLDGSAR 318 (359)
T ss_dssp HHHH-------HHHHHHTCCCEEEEESCTTCSC
T ss_pred HHHH-------HHHHHhcCCeEEEEecCccccc
Confidence 4321 1222222235788999987643
No 261
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.61 E-value=8.8e-08 Score=100.15 Aligned_cols=106 Identities=21% Similarity=0.188 Sum_probs=71.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccccccccc----ccchhh-------------hHHHHH
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA----NIDIRD-------------TIRYKE 128 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t----~i~~r~-------------~~~~~~ 128 (426)
..++.+++|+|++|||||||++.|+|...+..+.+.+.+.. +...|+.. ...+++ ...+.+
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~ 368 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQI--LSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEE 368 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCC--EEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCee--eEeechhcccccCCCHHHHHHHhhhhccchhHHHHHH
Confidence 35778999999999999999999999988777666543222 11111110 000111 112345
Q ss_pred HHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 129 VMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 129 ~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+++.+++.... -.....||+|++|++.+|+++..+++++|+|.|-
T Consensus 369 ~l~~~~l~~~~--~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT 413 (538)
T 3ozx_A 369 VTKRLNLHRLL--ESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS 413 (538)
T ss_dssp TTTTTTGGGCT--TSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred HHHHcCCHHHh--cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 56666665332 2233469999999999999999999999999993
No 262
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.59 E-value=1.5e-07 Score=99.68 Aligned_cols=106 Identities=18% Similarity=0.128 Sum_probs=72.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceE------EEeccCcccccccccc--ccc-h-h----hhHHHHHHHHH
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG------YVMNLDPAVMTLPFAA--NID-I-R----DTIRYKEVMKQ 132 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~------~i~~~d~~v~~~~~~t--~i~-~-r----~~~~~~~~~~~ 132 (426)
.++.+++|+|++|||||||++.|+|...+..+.+ +++-.++... ...+. ++. . + ....+.++++.
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~-~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 458 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAE-YEGTVYELLSKIDSSKLNSNFYKTELLKP 458 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCC-CSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCC-CCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 5678999999999999999999999876654443 2222222110 00010 110 1 0 11234567889
Q ss_pred cCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 133 FNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 133 ~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+++.... -.....||+|+++++.+++++..+++++|+|.|-
T Consensus 459 ~~l~~~~--~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt 499 (607)
T 3bk7_A 459 LGIIDLY--DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS 499 (607)
T ss_dssp HTCTTTT--TSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred cCCchHh--cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 9986432 2334469999999999999999999999999993
No 263
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.58 E-value=4.6e-08 Score=94.43 Aligned_cols=115 Identities=19% Similarity=0.194 Sum_probs=71.4
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEe------ccCcccccccccc--ccc-hh-hhHHHHH
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM------NLDPAVMTLPFAA--NID-IR-DTIRYKE 128 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~------~~d~~v~~~~~~t--~i~-~r-~~~~~~~ 128 (426)
..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+. ..++.. ++.+. ++. .. ....+.+
T Consensus 54 l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l--~~~tv~enl~~~~~~~~~~~~ 131 (290)
T 2bbs_A 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWI--MPGTIKENIIGVSYDEYRYRS 131 (290)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCC--CSSBHHHHHHTTCCCHHHHHH
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCcc--CcccHHHHhhCcccchHHHHH
Confidence 445566677889999999999999999999999987765555432 222221 11110 110 00 0011223
Q ss_pred HHHHcCCCC------CCC---cccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 129 VMKQFNLGP------NGG---ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 129 ~~~~~~l~~------ng~---i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+++.+++.. .+. +-.....||+|+++++.+++++..+++++|+|.|-
T Consensus 132 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt 187 (290)
T 2bbs_A 132 VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (290)
T ss_dssp HHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred HHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence 334333321 000 00012358999999999999999999999999993
No 264
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.57 E-value=3.3e-07 Score=96.82 Aligned_cols=117 Identities=11% Similarity=0.054 Sum_probs=79.7
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhh--
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDT-- 123 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~-- 123 (426)
..+.+...+++.+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+...++.+.+ .+++.
T Consensus 359 l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~ 438 (582)
T 3b5x_A 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIA 438 (582)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHh
Confidence 5566777788999999999999999999999999888888887766431 12222322211 11111
Q ss_pred ---------HHHHHHHHHcCCCCC-----CCcc----cccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 124 ---------IRYKEVMKQFNLGPN-----GGIL----TSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 124 ---------~~~~~~~~~~~l~~n-----g~i~----~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
..+.++++..++... .|.- .....+|+|++|++.+++++..+++++++|.|-
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpt 508 (582)
T 3b5x_A 439 YAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEAT 508 (582)
T ss_pred ccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 123445555554311 0110 112358999999999999999999999999994
No 265
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.53 E-value=4.3e-08 Score=98.37 Aligned_cols=115 Identities=13% Similarity=0.097 Sum_probs=76.9
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc---chhh---
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI---DIRD--- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i---~~r~--- 122 (426)
..+.++...++.+++|+|++||||||||+.|+|... ..+.+.+.+.+.. +..+++...+ .+++
T Consensus 37 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~ 115 (390)
T 3gd7_A 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD 115 (390)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHC
T ss_pred eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhh
Confidence 455667778899999999999999999999999876 5666666554311 1111111100 0111
Q ss_pred ------hHHHHHHHHHcCCCCCCCcccc---------cccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 123 ------TIRYKEVMKQFNLGPNGGILTS---------LNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 123 ------~~~~~~~~~~~~l~~ng~i~~~---------~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
..++.++++.+++......... ...||+|++|++.+++++..+++++|+|.|
T Consensus 116 ~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEP 182 (390)
T 3gd7_A 116 PNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEP 182 (390)
T ss_dssp TTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESH
T ss_pred hccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1234567777776532111110 012899999999999999999999999999
No 266
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.51 E-value=5.9e-07 Score=95.12 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=68.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCce------EEEeccCcccccccccc--ccc------hhhhHHHHHHHHHcCC
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIR------GYVMNLDPAVMTLPFAA--NID------IRDTIRYKEVMKQFNL 135 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~------~~i~~~d~~v~~~~~~t--~i~------~r~~~~~~~~~~~~~l 135 (426)
.+++|+|++|||||||++.|.|...+..+. ++.+..++.. ..+.+. ++. ........++++.+++
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l 457 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAP-KFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRI 457 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCC-CCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccc-cCCccHHHHHHHHhhcccccHHHHHHHHHHcCC
Confidence 679999999999999999999987766542 2222111110 000000 000 0112234567888888
Q ss_pred CCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 136 GPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 136 ~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
..... .....||+|++|++.+|+++..+++++|+|.|-
T Consensus 458 ~~~~~--~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT 495 (608)
T 3j16_B 458 DDIID--QEVQHLSGGELQRVAIVLALGIPADIYLIDEPS 495 (608)
T ss_dssp TTTSS--SBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred hhhhc--CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 75432 233469999999999999999999999999993
No 267
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.51 E-value=3.3e-07 Score=96.94 Aligned_cols=117 Identities=19% Similarity=0.219 Sum_probs=76.5
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc---chhhhH-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI---DIRDTI- 124 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i---~~r~~~- 124 (426)
..+.+...+++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++.+.+ .+++.+
T Consensus 359 l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~ 438 (587)
T 3qf4_A 359 LSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLK 438 (587)
T ss_dssp EEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHT
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHh
Confidence 34455667788999999999999999999999999888888877665421 2222222211 122222
Q ss_pred ---------HHHHHHHHcCCC------CCC---CcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 125 ---------RYKEVMKQFNLG------PNG---GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 125 ---------~~~~~~~~~~l~------~ng---~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.+.+.++..++. |+| -+-.....||+|++|++.+|+++..+++++++|.|-
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpt 507 (587)
T 3qf4_A 439 WGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCT 507 (587)
T ss_dssp TTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCC
T ss_pred ccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 122233333321 110 011112358999999999999999999999999993
No 268
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.50 E-value=2.6e-07 Score=97.53 Aligned_cols=117 Identities=14% Similarity=0.110 Sum_probs=77.2
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhhH-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDTI- 124 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~~- 124 (426)
..+.+...+++.+++|+|++|||||||++.|.|...+..+.+.+.+.+. .+...++.+.+ .+++.+
T Consensus 357 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~ 436 (578)
T 4a82_A 357 LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENIL 436 (578)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHG
T ss_pred eeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHh
Confidence 4455566778899999999999999999999999888888777765441 12222222211 122222
Q ss_pred ---------HHHHHHHHcCCC------CCC---CcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 125 ---------RYKEVMKQFNLG------PNG---GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 125 ---------~~~~~~~~~~l~------~ng---~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.+.+.++..++. |+| -+-.....+|+|++|++.+|+++..+++++++|.|-
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpt 505 (578)
T 4a82_A 437 LGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEAT 505 (578)
T ss_dssp GGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred cCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 223334443321 111 011112358999999999999999999999999993
No 269
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.48 E-value=3.6e-07 Score=95.56 Aligned_cols=108 Identities=16% Similarity=0.160 Sum_probs=70.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEE-----------EeccCc------------c----cccccccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGY-----------VMNLDP------------A----VMTLPFAANI 118 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~-----------i~~~d~------------~----v~~~~~~t~i 118 (426)
..++.+++|+|++|||||||++.|+|...+..+.+. +.+.+. . .....+....
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 446789999999999999999999998766554330 000000 0 0000000000
Q ss_pred ---chhh-------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 119 ---DIRD-------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 119 ---~~r~-------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
..+. ..++.++++.+++.... -.....||+|++|++.+|+++..+++++|+|.|-
T Consensus 102 ~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~--~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPt 166 (538)
T 3ozx_A 102 LKGTVNEILTKIDERGKKDEVKELLNMTNLW--NKDANILSGGGLQRLLVAASLLREADVYIFDQPS 166 (538)
T ss_dssp CCSBHHHHHHHHCCSSCHHHHHHHTTCGGGT--TSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred ccCcHHHHhhcchhHHHHHHHHHHcCCchhh--cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 0011 11356788888876432 2334569999999999999999999999999993
No 270
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.48 E-value=8.5e-07 Score=79.95 Aligned_cols=136 Identities=16% Similarity=0.218 Sum_probs=81.9
Q ss_pred EEEEE-cCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354 71 IIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (426)
Q Consensus 71 ~v~ii-G~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls 149 (426)
+|+|+ +..|+||||+.-.|.......+.++.+++.||.-+.. . .++..+. + +..+.
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~---------~---------~~~~~~~-~----~~~~~ 59 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLT---------N---------WSKAGKA-A----FDVFT 59 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH---------H---------HHTTSCC-S----SEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHH---------H---------HHhcCCC-C----CcEEe
Confidence 56666 6799999999999998887788899999988642110 0 0111111 1 11122
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~ 229 (426)
..-..+...+..+...++++||||||.... .....+ ..+|.+++++...... ... ...+..+..
T Consensus 60 ~~~~~l~~~l~~l~~~yD~viiD~~~~~~~--------~~~~~l--~~ad~viiv~~~~~~~-~~~-----~~~~~~l~~ 123 (206)
T 4dzz_A 60 AASEKDVYGIRKDLADYDFAIVDGAGSLSV--------ITSAAV--MVSDLVIIPVTPSPLD-FSA-----AGSVVTVLE 123 (206)
T ss_dssp CCSHHHHHTHHHHTTTSSEEEEECCSSSSH--------HHHHHH--HHCSEEEEEECSCTTT-HHH-----HHHHHHHHT
T ss_pred cCcHHHHHHHHHhcCCCCEEEEECCCCCCH--------HHHHHH--HHCCEEEEEecCCHHH-HHH-----HHHHHHHHH
Confidence 222444445555567799999999987542 122222 2268999999876543 211 122233332
Q ss_pred -----ccCCeEEEEecCCCCC
Q 014354 230 -----TRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 230 -----~~~P~IlVlNKiDl~~ 245 (426)
.+.++.+|+||++...
T Consensus 124 ~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 124 AQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TSCGGGCCEEEEEECSBCTTE
T ss_pred HHHhCCCCcEEEEEeccCCCc
Confidence 2467789999999543
No 271
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.46 E-value=2.6e-07 Score=96.61 Aligned_cols=106 Identities=18% Similarity=0.135 Sum_probs=69.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceE------EEeccCcccccccccc--ccc-h-h----hhHHHHHHHHH
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG------YVMNLDPAVMTLPFAA--NID-I-R----DTIRYKEVMKQ 132 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~------~i~~~d~~v~~~~~~t--~i~-~-r----~~~~~~~~~~~ 132 (426)
.++.+++|+|++|||||||++.|+|...+..+.+ +++-.++... ...+. .+. . + ....+.++++.
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~-~~~tv~~~~~~~~~~~~~~~~~~~~~l~~ 388 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKAD-YEGTVYELLSKIDASKLNSNFYKTELLKP 388 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCC-CSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCC-CCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 5678999999999999999999999877654433 2332222110 00010 000 0 0 01123455667
Q ss_pred cCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 133 FNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 133 ~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+++.+. .-.....||+|+++++.+++++..+++++|+|.|-
T Consensus 389 ~~l~~~--~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt 429 (538)
T 1yqt_A 389 LGIIDL--YDREVNELSGGELQRVAIAATLLRDADIYLLDEPS 429 (538)
T ss_dssp TTCGGG--TTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred cCChhh--hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 776432 22334569999999999999999999999999993
No 272
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.45 E-value=3e-07 Score=97.44 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=76.5
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc---chhhhHH
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI---DIRDTIR 125 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i---~~r~~~~ 125 (426)
..+.+...+++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.. +...++.+.+ .+++.+.
T Consensus 371 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~ 450 (598)
T 3qf4_B 371 LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLK 450 (598)
T ss_dssp CCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHH
T ss_pred ccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHh
Confidence 55666777889999999999999999999999999888887777654421 2222222211 1222221
Q ss_pred ----------HHHHHHHcCCC------CCCCccc----ccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 126 ----------YKEVMKQFNLG------PNGGILT----SLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 126 ----------~~~~~~~~~l~------~ng~i~~----~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+.++++..++. |+ |.-+ ....||+|++|++.+|+++..+++++++|.|-
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpt 519 (598)
T 3qf4_B 451 YGNPGATDEEIKEAAKLTHSDHFIKHLPE-GYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEAT 519 (598)
T ss_dssp SSSTTCCTTHHHHHTTTTTCHHHHHTSTT-GGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCC
T ss_pred cCCCCCCHHHHHHHHHHhCCHHHHHhccc-cccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 22222222211 11 1111 11348999999999999999999999999994
No 273
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.43 E-value=1.5e-06 Score=90.95 Aligned_cols=113 Identities=14% Similarity=0.157 Sum_probs=73.5
Q ss_pred CCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceE---------EEeccCc------------cccc-------
Q 014354 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG---------YVMNLDP------------AVMT------- 111 (426)
Q Consensus 60 ~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~---------~i~~~d~------------~v~~------- 111 (426)
.+.+ ...++.+++|+|++|||||||++.|.|...+..+.+ .+.+.+. .+..
T Consensus 39 ~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~ 117 (538)
T 1yqt_A 39 YRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDL 117 (538)
T ss_dssp ECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGG
T ss_pred cCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 3444 457888999999999999999999999876654431 0000000 0000
Q ss_pred cccccccchhh-------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 112 LPFAANIDIRD-------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 112 ~~~~t~i~~r~-------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.+........+ ..++.++++.+++..... .....||+|+++++.+|+++..+++++|+|.|-
T Consensus 118 ~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~--~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPT 186 (538)
T 1yqt_A 118 IPKAVKGKVIELLKKADETGKLEEVVKALELENVLE--REIQHLSGGELQRVAIAAALLRNATFYFFDEPS 186 (538)
T ss_dssp SGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTT--SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred cchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 00000000111 124567899999865332 233469999999999999999999999999993
No 274
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.42 E-value=3.3e-07 Score=97.11 Aligned_cols=117 Identities=16% Similarity=0.072 Sum_probs=79.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhh---
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRD--- 122 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~--- 122 (426)
..+.+...+++.+++|+|++|||||||++.|+|...+..+.+.+.+.+. .+...++.+.+ .+++
T Consensus 360 l~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~ 439 (595)
T 2yl4_A 360 FQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIA 439 (595)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHH
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHh
Confidence 4455666788899999999999999999999999888877777765431 12222222111 0111
Q ss_pred ----------hHHHHHHHHHcCCCCC-----CCcccc----cccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 123 ----------TIRYKEVMKQFNLGPN-----GGILTS----LNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 123 ----------~~~~~~~~~~~~l~~n-----g~i~~~----~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
...+.++++..++... .|.-+. ...||+|++|++.+++++..+++++++|.|=
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpt 511 (595)
T 2yl4_A 440 YGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEAT 511 (595)
T ss_dssp TTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCC
T ss_pred hcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 1234556666664210 111111 1458999999999999999999999999993
No 275
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.41 E-value=2.9e-07 Score=97.24 Aligned_cols=117 Identities=12% Similarity=0.045 Sum_probs=77.4
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhh--
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDT-- 123 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~-- 123 (426)
..+.+...+++.+++|+|++|||||||++.|.|...+..+.+.+.+.+. .+...++.+.+ .+++.
T Consensus 359 l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~ 438 (582)
T 3b60_A 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIA 438 (582)
T ss_dssp EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHH
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHh
Confidence 4445566778899999999999999999999999888877777765431 12222222111 11111
Q ss_pred ---------HHHHHHHHHcCCCCC-----CCc----ccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 124 ---------IRYKEVMKQFNLGPN-----GGI----LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 124 ---------~~~~~~~~~~~l~~n-----g~i----~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.++.++++..++... .|. -.....+|+|++|++.+++++..+++++++|.|-
T Consensus 439 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpt 508 (582)
T 3b60_A 439 YARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 508 (582)
T ss_dssp TTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTT
T ss_pred ccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 123444555544210 011 0112358999999999999999999999999994
No 276
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.40 E-value=1.3e-06 Score=92.63 Aligned_cols=112 Identities=15% Similarity=0.211 Sum_probs=73.1
Q ss_pred CCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceE---------EEeccCc------------cccccccc----
Q 014354 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG---------YVMNLDP------------AVMTLPFA---- 115 (426)
Q Consensus 61 ~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~---------~i~~~d~------------~v~~~~~~---- 115 (426)
+.+ ...++.+++|+|++|||||||++.|.|...+..+.+ .+.+.+. .+...++.
T Consensus 110 ~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~ 188 (607)
T 3bk7_A 110 RLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLL 188 (607)
T ss_dssp CCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGG
T ss_pred CCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhc
Confidence 344 456888999999999999999999999876654431 0001000 00000000
Q ss_pred cc-c--chhh-------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 116 AN-I--DIRD-------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 116 t~-i--~~r~-------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.. + .+.+ ..++.++++.+++..... .....||+|+++++.+|+++..+++++|+|.|-
T Consensus 189 ~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~--~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPT 256 (607)
T 3bk7_A 189 PKAVKGKVRELLKKVDEVGKFEEVVKELELENVLD--RELHQLSGGELQRVAIAAALLRKAHFYFFDEPS 256 (607)
T ss_dssp GGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGG--SBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTT
T ss_pred hhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhC--CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 00 0 0111 124567899999865322 233469999999999999999999999999993
No 277
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.40 E-value=1e-06 Score=85.33 Aligned_cols=104 Identities=16% Similarity=0.123 Sum_probs=64.6
Q ss_pred CEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCCh
Q 014354 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246 (426)
Q Consensus 167 ~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~ 246 (426)
.+++||| +.++.... . .....+|++|+|+|+.......... ..++..+...++|.|||+||+|+...
T Consensus 64 ~~~iwD~--qer~~~l~---~-----~~~~~ad~vilV~D~~~~~~s~~~l---~~~l~~~~~~~~piilv~NK~DL~~~ 130 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLT---K-----PHVANVDQVILVVTVKMPETSTYII---DKFLVLAEKNELETVMVINKMDLYDE 130 (301)
T ss_dssp SEEEEEE--CCCSCEET---T-----TTEESCCEEEEEECSSTTCCCHHHH---HHHHHHHHHTTCEEEEEECCGGGCCH
T ss_pred eEEEEEE--ccccceee---c-----cccccCCEEEEEEeCCCCCCCHHHH---HHHHHHHHHCCCCEEEEEeHHHcCCc
Confidence 7899999 55542111 1 0124579999999998643221211 11222334468999999999999876
Q ss_pred HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcC-CceEEeecccCCCHHHHHHHHH
Q 014354 247 EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKN-LKSVGVSSVSGAGIEAYFKAVE 309 (426)
Q Consensus 247 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~vv~vSA~~g~gv~~l~~~l~ 309 (426)
... .....+.. .+.. .+++++||++|.|+++++..+.
T Consensus 131 ~~v----~~~~~~~~----------------------~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 131 DDL----RKVRELEE----------------------IYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHH----HHHHHHHH----------------------HHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred hhH----HHHHHHHH----------------------HHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 532 11111111 1111 5799999999999999998874
No 278
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.40 E-value=1.3e-07 Score=90.86 Aligned_cols=29 Identities=21% Similarity=0.525 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~ 95 (426)
.+...|+++|.||+|||||+|+|++....
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~ 146 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIA 146 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCcee
Confidence 35678999999999999999999987643
No 279
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.37 E-value=7.5e-07 Score=102.40 Aligned_cols=142 Identities=15% Similarity=0.178 Sum_probs=95.0
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhhH-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDTI- 124 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~~- 124 (426)
..+.+...+++.+|+|+|++|||||||++.|.+-..+..+.+.|.+.|. .++.+|+.+.+ .+|+++
T Consensus 1095 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~ 1174 (1321)
T 4f4c_A 1095 LKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENII 1174 (1321)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHS
T ss_pred ccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHh
Confidence 3445566778899999999999999999999999999999998877762 23334444322 134432
Q ss_pred -----------HHHHHHHHcCCC------CCCCcccc----cccccccHHHHHHHHHHHhcCCCEEEEcCCCc-ccccch
Q 014354 125 -----------RYKEVMKQFNLG------PNGGILTS----LNLFTTKFDEVISLIERRADHLDYVLVDTPGQ-IEIFTW 182 (426)
Q Consensus 125 -----------~~~~~~~~~~l~------~ng~i~~~----~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi-~e~~~~ 182 (426)
.+.++++..++. |+ |.-+. -.-||+|++|++.+|+++.++++++++|.|-- .+
T Consensus 1175 ~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~-GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD---- 1249 (1321)
T 4f4c_A 1175 YGLDPSSVTMAQVEEAARLANIHNFIAELPE-GFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD---- 1249 (1321)
T ss_dssp SSSCTTTSCHHHHHHHHHHTTCHHHHHTSTT-TTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTT----
T ss_pred ccCCCCCCCHHHHHHHHHHhCChHHHHcCcC-CCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCC----
Confidence 233445544432 21 21111 13489999999999999999999999999843 22
Q ss_pred hchHHHHHHHHHhcCCcEEEEEE
Q 014354 183 SASGAIITEAFASTFPTVVTYVV 205 (426)
Q Consensus 183 ~~~~~~l~~~~~~~~~d~vl~VV 205 (426)
......+.+.+.....+..+++|
T Consensus 1250 ~~tE~~Iq~~l~~~~~~~TvI~I 1272 (1321)
T 4f4c_A 1250 TESEKVVQEALDRAREGRTCIVI 1272 (1321)
T ss_dssp SHHHHHHHHHHTTTSSSSEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEe
Confidence 22345566666655556555555
No 280
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.36 E-value=2.9e-07 Score=96.88 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
+..+|+|+|.||+|||||+|+|+|..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 45789999999999999999999975
No 281
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.36 E-value=3.1e-07 Score=81.26 Aligned_cols=99 Identities=15% Similarity=0.157 Sum_probs=53.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---ccccccccccch--hhhH-HHHHHHHHcCCCCCC
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---VMTLPFAANIDI--RDTI-RYKEVMKQFNLGPNG 139 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---v~~~~~~t~i~~--r~~~-~~~~~~~~~~l~~ng 139 (426)
..++.+++|+|++|||||||++.+.+.... +..+.. +...++...+.- .+.. .........+..
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~~~~~~~~-------~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--- 75 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKKHFKPTEV-------ISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKL--- 75 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHHHSCGGGE-------EEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHccCCeE-------EccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCe---
Confidence 457789999999999999999965432110 111100 000011110100 0000 011111122221
Q ss_pred CcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 140 GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 140 ~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
-+.......+++.++++.+++++..++.++++|.|
T Consensus 76 ~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEP 110 (171)
T 4gp7_A 76 TVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLP 110 (171)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCC
Confidence 11222234588899999999999999999999999
No 282
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.30 E-value=8.7e-07 Score=93.85 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=72.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEE-----------EeccCc-------------------cccccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGY-----------VMNLDP-------------------AVMTLPFA 115 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~-----------i~~~d~-------------------~v~~~~~~ 115 (426)
..++.+++|+|++||||||||+.|.|...+..+.+. +.+... .+...+..
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRA 179 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHH
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhh
Confidence 457889999999999999999999998877665431 000000 00000000
Q ss_pred c-----cc----ch---hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 116 A-----NI----DI---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 116 t-----~i----~~---r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
. .+ .. +...++.++++.+++..... .....||+|++|++.+++++..+++++|+|.|-
T Consensus 180 ~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~--~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPt 249 (608)
T 3j16_B 180 IKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLK--RDIEKLSGGELQRFAIGMSCVQEADVYMFDEPS 249 (608)
T ss_dssp CSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGG--SCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTT
T ss_pred hcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhC--CChHHCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 0 00 00 11134677889999864322 233469999999999999999999999999984
No 283
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.27 E-value=4.2e-06 Score=80.25 Aligned_cols=85 Identities=26% Similarity=0.420 Sum_probs=60.1
Q ss_pred cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHH
Q 014354 196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN 275 (426)
Q Consensus 196 ~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 275 (426)
..+|+++.|+|+......... .+...+ .++|.++|+||+|++.......|.+.++
T Consensus 22 ~~aDvVl~VvDAr~p~~~~~~-----~l~~~l--~~kp~ilVlNK~DL~~~~~~~~~~~~~~------------------ 76 (282)
T 1puj_A 22 KLIDIVYELVDARIPMSSRNP-----MIEDIL--KNKPRIMLLNKADKADAAVTQQWKEHFE------------------ 76 (282)
T ss_dssp GGCSEEEEEEETTSTTTTSCH-----HHHHHC--SSSCEEEEEECGGGSCHHHHHHHHHHHH------------------
T ss_pred hhCCEEEEEEeCCCCCccCCH-----HHHHHH--CCCCEEEEEECcccCCHHHHHHHHHHHH------------------
Confidence 457999999999876554321 111112 5799999999999998654444443321
Q ss_pred HhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 276 ~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
. ...+++.+||.+|.|+.+|++.+.+.+..
T Consensus 77 -------~--~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 77 -------N--QGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp -------T--TTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred -------h--cCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 0 12479999999999999999988877664
No 284
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=98.24 E-value=1.1e-05 Score=77.98 Aligned_cols=161 Identities=16% Similarity=0.186 Sum_probs=86.3
Q ss_pred CCeEEEEEcC-CCCCHHHHHHHHHcccccCCceEEEeccCccccccccc----cccchhhh----HHHHHHHHHc-----
Q 014354 68 KPVIIIVVGM-AGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFA----ANIDIRDT----IRYKEVMKQF----- 133 (426)
Q Consensus 68 ~~~~v~iiG~-~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~----t~i~~r~~----~~~~~~~~~~----- 133 (426)
+..+|+|+|. +|+||||+.-.|.......+.++.+++.|+.-...... ...++.+. ...++++...
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 182 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGF 182 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTTE
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCCE
Confidence 4467888886 89999999999998877778899999998632111100 00011111 1111211111
Q ss_pred CCCCCCCccccc-ccc-cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCC
Q 014354 134 NLGPNGGILTSL-NLF-TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA 211 (426)
Q Consensus 134 ~l~~ng~i~~~~-~~l-s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~ 211 (426)
.+.+.+...... .++ +..+.+.+ ..+...++++|||||+..... .. ......+|.+|+|+......
T Consensus 183 ~vl~~g~~~~~~~ell~~~~l~~ll---~~l~~~yD~VIIDtpp~~~~~-----d~----~~l~~~ad~vilV~~~~~~~ 250 (299)
T 3cio_A 183 DVITRGQVPPNPSELLMRDRMRQLL---EWANDHYDLVIVDTPPMLAVS-----DA----AVVGRSVGTSLLVARFGLNT 250 (299)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHH---HHHHHHCSEEEEECCCTTTCT-----HH----HHHGGGCSEEEEEEETTTSC
T ss_pred EEEECCCCCCCHHHHhCHHHHHHHH---HHHHhCCCEEEEcCCCCchhH-----HH----HHHHHHCCEEEEEEcCCCCh
Confidence 111111111100 001 22333333 333466999999999975420 11 11224579999999875433
Q ss_pred CchhhhhhHHHHHHHHhhccCCeE-EEEecCCCCC
Q 014354 212 NPMTFMSNMLYACSILYKTRLPLV-LAFNKTDVAQ 245 (426)
Q Consensus 212 ~~~~~~~~~l~~~~~l~~~~~P~I-lVlNKiDl~~ 245 (426)
-... ......+.+.+.+++ +|+|++|...
T Consensus 251 ~~~~-----~~~~~~l~~~~~~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 251 AKEV-----SLSMQRLEQAGVNIKGAILNGVIKRA 280 (299)
T ss_dssp TTHH-----HHHHHHHHHTTCCCCCEEEEECCCCC
T ss_pred HHHH-----HHHHHHHHhCCCCeEEEEEeCCccCC
Confidence 2211 233444555666655 8899998654
No 285
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.23 E-value=1.3e-06 Score=86.53 Aligned_cols=138 Identities=12% Similarity=0.099 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCC-------chhhhhhHHHHHHHHh----hccCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN-------PMTFMSNMLYACSILY----KTRLP 233 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~-------~~~~~~~~l~~~~~l~----~~~~P 233 (426)
+..+.||||+|+..+..... ..+ ..++++|||+|.+..-. ...+. .....+..+. ..+.|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~------~yf--~~a~~iIfV~dls~~d~~l~ed~~~nr~~-e~~~~~~~i~~~~~~~~~p 262 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWI------HCF--EGVTAIIFCVALSDYDLVLAEDEEMNRMH-ESMKLFDSICNNKWFTDTS 262 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGG------GGC--TTCSEEEEEEEGGGGGCEETTEEEEEHHH-HHHHHHHHHHTCGGGTTSE
T ss_pred CeeEEEEeCCCchhhhHHHH------HHH--hcCCEEEEEEECccccccccccchhhhHH-HHHHHHHHHHcCccccCCc
Confidence 45688999999977521111 111 34789999999976422 11111 1122222222 24789
Q ss_pred eEEEEecCCCCChHhHHHHHHHHHHHHHHhcc--ccchhhhHHHHhhhhHhh--hhcCCceEEeecccCCCHHHHHHHHH
Q 014354 234 LVLAFNKTDVAQHEFALEWMQDFEVFQAAISS--DHSYTSTLTNSLSLALDE--FYKNLKSVGVSSVSGAGIEAYFKAVE 309 (426)
Q Consensus 234 ~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~--~~~~~~vv~vSA~~g~gv~~l~~~l~ 309 (426)
+|||+||+|+....... ..+....+.... .......+.+....-+.. ......++.+||++|.||.++|.++.
T Consensus 263 iiLv~NK~DL~~~ki~~---~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~ 339 (353)
T 1cip_A 263 IILFLNKKDLFEEKIKK---SPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVT 339 (353)
T ss_dssp EEEEEECHHHHHHHHTT---SCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred EEEEEECcCchhhhccc---cchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHH
Confidence 99999999974321000 000000000000 000000011100000000 01235688999999999999999998
Q ss_pred HHHHH
Q 014354 310 ESAQE 314 (426)
Q Consensus 310 ~~~~~ 314 (426)
..+..
T Consensus 340 ~~i~~ 344 (353)
T 1cip_A 340 DVIIK 344 (353)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77643
No 286
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=98.21 E-value=1.2e-05 Score=77.58 Aligned_cols=43 Identities=23% Similarity=0.233 Sum_probs=36.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~ 108 (426)
.+++.+|+|+|..|+||||+.-.|.......+.++.+++.||.
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3456788888999999999999999888778899999999974
No 287
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=98.20 E-value=1e-05 Score=77.74 Aligned_cols=160 Identities=14% Similarity=0.172 Sum_probs=85.3
Q ss_pred CCeEEEEEc-CCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHc-CCC--------C
Q 014354 68 KPVIIIVVG-MAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQF-NLG--------P 137 (426)
Q Consensus 68 ~~~~v~iiG-~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~-~l~--------~ 137 (426)
+..+|+|+| .+|+||||+.-.|.......+.++.+++.|+.-...... +++.....+.+++..- .+. +
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~--~~~~~~~gl~~~l~~~~~~~~~i~~~~~~ 168 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHEL--LGTNNVNGLSEILIGQGDITTAAKPTSIA 168 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHH--HTCCCTTCHHHHHHTSSCTTTTCEECSST
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHH--hCCCCCCCHHHHccCCCCHHHheeccCCC
Confidence 345666666 589999999999998887778899999998642211100 0000111111111110 000 0
Q ss_pred CCCccccc-------cc-ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354 138 NGGILTSL-------NL-FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR 209 (426)
Q Consensus 138 ng~i~~~~-------~~-ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~ 209 (426)
+-.++..- .+ -+..+. .++..+...++++|||||+..... .. ......+|.+|+|+.+..
T Consensus 169 ~l~vl~~g~~~~~~~ell~~~~l~---~ll~~l~~~yD~VIIDtpp~~~~~-----da----~~l~~~aD~vllVv~~~~ 236 (286)
T 3la6_A 169 KFDLIPRGQVPPNPSELLMSERFA---ELVNWASKNYDLVLIDTPPILAVT-----DA----AIVGRHVGTTLMVARYAV 236 (286)
T ss_dssp TEEEECCCSCCSCHHHHHTSHHHH---HHHHHHHHHCSEEEEECCCTTTCT-----HH----HHHTTTCSEEEEEEETTT
T ss_pred CEEEEeCCCCCCCHHHHhchHHHH---HHHHHHHhCCCEEEEcCCCCcchH-----HH----HHHHHHCCeEEEEEeCCC
Confidence 10011100 00 112233 333444566999999999875421 01 112245899999998754
Q ss_pred CCCchhhhhhHHHHHHHHhhccCCe-EEEEecCCCCCh
Q 014354 210 SANPMTFMSNMLYACSILYKTRLPL-VLAFNKTDVAQH 246 (426)
Q Consensus 210 ~~~~~~~~~~~l~~~~~l~~~~~P~-IlVlNKiDl~~~ 246 (426)
..- . ........+.+.+.++ -+|+||++....
T Consensus 237 ~~~--~---~~~~~~~~l~~~g~~~~GvVlN~v~~~~~ 269 (286)
T 3la6_A 237 NTL--K---EVETSLSRFEQNGIPVKGVILNSIFRRAS 269 (286)
T ss_dssp SBH--H---HHHHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred CcH--H---HHHHHHHHHHhCCCCEEEEEEcCcccccc
Confidence 221 1 1123345556666664 489999986553
No 288
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.20 E-value=3.5e-07 Score=93.77 Aligned_cols=122 Identities=18% Similarity=0.209 Sum_probs=76.3
Q ss_pred hhhHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCc-e-EEEeccCcc--ccc
Q 014354 36 KEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI-R-GYVMNLDPA--VMT 111 (426)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~-~-~~i~~~d~~--v~~ 111 (426)
.+..+++..++.++. ...++.+++|+|++|||||||++.|+|...+.++ . +.+.+ ++. +..
T Consensus 119 i~~~nl~~~y~~vsl--------------~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~~~~i~~ 183 (460)
T 2npi_A 119 KYIYNLHFMLEKIRM--------------SNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DPQQPIFT 183 (460)
T ss_dssp HHHHHHHHHHHHHHH--------------HSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CTTSCSSS
T ss_pred hhhhhhhehhhcCce--------------EeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-CccCCeee
Confidence 456777777765443 2346778999999999999999999999877767 6 55543 321 222
Q ss_pred cccccc-------cchhhhH-------------HHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHH--HhcCCCE-
Q 014354 112 LPFAAN-------IDIRDTI-------------RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIER--RADHLDY- 168 (426)
Q Consensus 112 ~~~~t~-------i~~r~~~-------------~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~--~~~~~~~- 168 (426)
.|+... +.+++.+ ++.++++.+|+.... . ...||+++++++.++.+ +..++++
T Consensus 184 vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~---~-~~~LSgGq~qrlalAra~rL~~~p~i~ 259 (460)
T 2npi_A 184 VPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERIN---E-NKDLYLECISQLGQVVGQRLHLDPQVR 259 (460)
T ss_dssp CSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGG---G-CHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred eccchhhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCccc---c-hhhhhHHHHHHHHHHHHHHhccCcccC
Confidence 222210 0111100 011122223322211 1 23589999999999999 9999999
Q ss_pred ---EEEcCCCc
Q 014354 169 ---VLVDTPGQ 176 (426)
Q Consensus 169 ---~liDTPGi 176 (426)
+|+|+|+.
T Consensus 260 ~sGLlLDEpPt 270 (460)
T 2npi_A 260 RSGCIVDTPSI 270 (460)
T ss_dssp HSCEEEECCCG
T ss_pred cceEEEeCCcc
Confidence 99999543
No 289
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=98.19 E-value=1.9e-05 Score=75.10 Aligned_cols=161 Identities=16% Similarity=0.272 Sum_probs=84.7
Q ss_pred CCeEEEEEcC-CCCCHHHHHHHHHcccccCCceEEEeccCcccccccc----ccccchhhh----HHHHHHHHHc-----
Q 014354 68 KPVIIIVVGM-AGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPF----AANIDIRDT----IRYKEVMKQF----- 133 (426)
Q Consensus 68 ~~~~v~iiG~-~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~----~t~i~~r~~----~~~~~~~~~~----- 133 (426)
+..+|+|+|. +|+||||+.-.|.......+.++.+++.|+.-..... ....++.+. ...++++...
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 160 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDL 160 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCCE
Confidence 4467888875 8999999999999887778889999999853211110 000011111 1111111111
Q ss_pred CCCCCCCccccc-ccc-cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCC
Q 014354 134 NLGPNGGILTSL-NLF-TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA 211 (426)
Q Consensus 134 ~l~~ng~i~~~~-~~l-s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~ 211 (426)
.+.+.|...... .++ +..+.+.+ ..+...++++|||||+..... ....+. ..+|.+|+|+.+....
T Consensus 161 ~vl~~g~~~~~~~ell~~~~l~~ll---~~l~~~yD~VIIDtpp~~~~~----d~~~l~-----~~aD~vilVv~~~~~~ 228 (271)
T 3bfv_A 161 DVLTSGPIPPNPSELITSRAFANLY---DTLLMNYNFVIIDTPPVNTVT----DAQLFS-----KFTGNVVYVVNSENNN 228 (271)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHH---HHHHHHCSEEEEECCCTTTCS----HHHHHH-----HHHCEEEEEEETTSCC
T ss_pred EEEECCCCCCCHHHHhChHHHHHHH---HHHHhCCCEEEEeCCCCchHH----HHHHHH-----HHCCEEEEEEeCCCCc
Confidence 111111111100 001 22333333 333456999999999875421 011111 2248899999875422
Q ss_pred CchhhhhhHHHHHHHHhhccCCeE-EEEecCCCCC
Q 014354 212 NPMTFMSNMLYACSILYKTRLPLV-LAFNKTDVAQ 245 (426)
Q Consensus 212 ~~~~~~~~~l~~~~~l~~~~~P~I-lVlNKiDl~~ 245 (426)
.. ........+.+.+.+++ +|+|++|...
T Consensus 229 --~~---~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 229 --KD---EVKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp --HH---HHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred --HH---HHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 11 11233445566677776 8999998643
No 290
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.18 E-value=3.9e-06 Score=96.49 Aligned_cols=117 Identities=16% Similarity=0.133 Sum_probs=79.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhhHH
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDTIR 125 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~~~ 125 (426)
..+.+...+++..++|+|++|||||||++.|++...+..+.+.+.+.+. .+...++.+-+ .+++++.
T Consensus 434 L~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~ 513 (1321)
T 4f4c_A 434 LRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENIS 513 (1321)
T ss_dssp EEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHH
T ss_pred eeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHh
Confidence 3455566788899999999999999999999999999888887766541 12333333311 2344432
Q ss_pred ----------HHHHHHHcCCC------CCCC---cccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 126 ----------YKEVMKQFNLG------PNGG---ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 126 ----------~~~~~~~~~l~------~ng~---i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+.++++..++. |+|- +--.-..||+|++|++.+|+++..+++++|+|.|=
T Consensus 514 ~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~t 582 (1321)
T 4f4c_A 514 LGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEAT 582 (1321)
T ss_dssp TTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred hhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEeccc
Confidence 23333333321 2211 11111248999999999999999999999999983
No 291
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=98.18 E-value=1e-05 Score=74.83 Aligned_cols=38 Identities=32% Similarity=0.375 Sum_probs=34.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~ 108 (426)
+|+|.|..|+||||+.-.|.......+.++.+++.||.
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 46779999999999999999988888899999999984
No 292
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.18 E-value=9.9e-07 Score=83.77 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQ 94 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~ 94 (426)
.+++++|.||+|||||+|+|++...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5899999999999999999998764
No 293
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.16 E-value=3e-06 Score=97.14 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=77.1
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhhH-
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDTI- 124 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~~- 124 (426)
..+.+...+++.+++|+|++|||||||++.|.|...+..+.+.+.+.+. .+..+|+.+.+ .+++.+
T Consensus 1049 l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~ 1128 (1284)
T 3g5u_A 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIA 1128 (1284)
T ss_dssp BSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHT
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHh
Confidence 5667777889999999999999999999999999888877777766542 12222322211 112211
Q ss_pred -----------HHHHHHHHcCCC------CCCCcc----cccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 125 -----------RYKEVMKQFNLG------PNGGIL----TSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 125 -----------~~~~~~~~~~l~------~ng~i~----~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
.+.+.++..++. |. |.- .....||+|++|++.+|+++..+++++|+|.|-
T Consensus 1129 ~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~-gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpT 1199 (1284)
T 3g5u_A 1129 YGDNSRVVSYEEIVRAAKEANIHQFIDSLPD-KYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEAT 1199 (1284)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTCHHHHSSTTT-GGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCS
T ss_pred ccCCCCCCCHHHHHHHHHHhCcHHHHHhCcc-ccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 122223332221 11 111 111358999999999999999999999999994
No 294
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.14 E-value=2.9e-06 Score=97.35 Aligned_cols=117 Identities=14% Similarity=0.084 Sum_probs=75.8
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc---chhhhHH
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI---DIRDTIR 125 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i---~~r~~~~ 125 (426)
..+.+...+++.+++|+|++|||||||++.|.|...+..+.+.+.+.+.. +..+++.+.+ .+++.+.
T Consensus 406 L~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~ 485 (1284)
T 3g5u_A 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIR 485 (1284)
T ss_dssp EEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHH
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHh
Confidence 44556667888999999999999999999999998888887777654311 2222222211 1232221
Q ss_pred ----------HHHHHHHcCCC------CC---CCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 126 ----------YKEVMKQFNLG------PN---GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 126 ----------~~~~~~~~~l~------~n---g~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+.+.++..++. |. .-+-.....||+|++|++.+|+++..+++++|+|.|=
T Consensus 486 ~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpt 554 (1284)
T 3g5u_A 486 YGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 554 (1284)
T ss_dssp HHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred cCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 12222222211 11 0011112248999999999999999999999999993
No 295
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.13 E-value=7.2e-06 Score=79.36 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=55.5
Q ss_pred cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHh---HHHHHHHHHHHHHHhccccchhhh
Q 014354 196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF---ALEWMQDFEVFQAAISSDHSYTST 272 (426)
Q Consensus 196 ~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~ 272 (426)
+.+|++++|+|+.+......... .++..+...++|.|||+||+|+..... ...+...+.
T Consensus 78 ~naD~vliV~d~~~p~~s~~~l~---~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~--------------- 139 (302)
T 2yv5_A 78 ANVDRVIIVETLKMPEFNNYLLD---NMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYR--------------- 139 (302)
T ss_dssp ESCCEEEEEECSTTTTCCHHHHH---HHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHH---------------
T ss_pred HhcCEEEEEEECCCCCCCHHHHH---HHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHH---------------
Confidence 55899999999986532222221 122234457899999999999987642 111211111
Q ss_pred HHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354 273 LTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE 309 (426)
Q Consensus 273 ~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~ 309 (426)
. ...+++++||++|.|+++|+..+.
T Consensus 140 ----------~--~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 140 ----------D--AGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp ----------H--TTCEEEECCTTTCTTHHHHHHHTT
T ss_pred ----------H--CCCeEEEEECCCCCCHHHHHhhcc
Confidence 1 124799999999999999988764
No 296
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.10 E-value=1.1e-06 Score=87.36 Aligned_cols=135 Identities=15% Similarity=0.177 Sum_probs=64.9
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCC-------chhhhhhHHHHHHHHh----hccCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN-------PMTFMSNMLYACSILY----KTRLP 233 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~-------~~~~~~~~l~~~~~l~----~~~~P 233 (426)
+..+.||||+|+..+... ....+ ..++++|||+|.+..-. ...+.. ....+..+. ..+.|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~------w~~~f--~~~~~iIfv~dls~~dq~l~ed~~~n~~~e-s~~~~~~i~~~~~~~~~p 270 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKR------WFECF--DSVTSILFLVSSSEFDQVLMEDRQTNRLTE-SLNIFETIVNNRVFSNVS 270 (362)
T ss_dssp TEEEEEEEECC-------------CTTSC--TTCCEEEEEEETTCTTCEETTEEEEEHHHH-HHHHHHHHHTCGGGTTSE
T ss_pred CeEEEEEeccchhhhhhh------HHHHh--CCCCEEEEEEECccccccccccccccHHHH-HHHHHHHHhcchhhCCCC
Confidence 457899999999664210 00111 24789999999987321 112211 122222222 24789
Q ss_pred eEEEEecCCCCChHhHHHHHHHHHHHHHHhcc---c-cc--hhhhHHHHhhhhHhhh--hcCCceEEeecccCCCHHHHH
Q 014354 234 LVLAFNKTDVAQHEFALEWMQDFEVFQAAISS---D-HS--YTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEAYF 305 (426)
Q Consensus 234 ~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~---~-~~--~~~~~~~~~~~~l~~~--~~~~~vv~vSA~~g~gv~~l~ 305 (426)
+|||+||+|+....... ..+...+.. . .. ....+....-..+... .....++.+||++|.||..+|
T Consensus 271 iILv~NK~DL~~~ki~~------~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF 344 (362)
T 1zcb_A 271 IILFLNKTDLLEEKVQV------VSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVF 344 (362)
T ss_dssp EEEEEECHHHHHHHTTT------CCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHH
T ss_pred EEEEEEChhhhhhhccc------cchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHH
Confidence 99999999975321000 000000000 0 00 0000000000000000 123568899999999999999
Q ss_pred HHHHHHHHH
Q 014354 306 KAVEESAQE 314 (426)
Q Consensus 306 ~~l~~~~~~ 314 (426)
.++...+..
T Consensus 345 ~~v~~~i~~ 353 (362)
T 1zcb_A 345 RDVKDTILH 353 (362)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999877643
No 297
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.08 E-value=1.4e-06 Score=79.79 Aligned_cols=93 Identities=16% Similarity=0.131 Sum_probs=55.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEe--ccC-----cccccccccc--cc-chhh-----------hHHH
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM--NLD-----PAVMTLPFAA--NI-DIRD-----------TIRY 126 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~--~~d-----~~v~~~~~~t--~i-~~r~-----------~~~~ 126 (426)
++.+++|+|++|||||||++.|+|. .+..+.+... ... ..+..+++.. ++ .... ...+
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~~~~ 99 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEPEVI 99 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTSCTTHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 4568999999999999999999998 6655444221 111 0122222221 11 1000 0011
Q ss_pred HHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcc
Q 014354 127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI 177 (426)
Q Consensus 127 ~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~ 177 (426)
.++++. .-|+++++.+++++..+++++|+|.|--.
T Consensus 100 ~~~l~~----------------glGq~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 100 PKLMEA----------------GIVEVAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp HHHHHT----------------TSEEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred HHHHHh----------------CCchHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 112221 11788888899999999999999999543
No 298
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.05 E-value=5.6e-06 Score=81.95 Aligned_cols=72 Identities=18% Similarity=0.122 Sum_probs=41.0
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCC-------CCCchhhhhhHHHHHHHHh----hccCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR-------SANPMTFMSNMLYACSILY----KTRLP 233 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~-------~~~~~~~~~~~l~~~~~l~----~~~~P 233 (426)
...+.||||+|+..+..... ..+ ..++++|+|+|.+. ..+...+... ......+. ..+.|
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~------~y~--~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~p 252 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWI------HLF--EGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTS 252 (354)
T ss_dssp --EEEEEEECCSTTGGGGTG------GGC--TTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCE
T ss_pred ceeeEEEECCCchhhhHHHH------HHh--CCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCe
Confidence 46789999999987632111 011 23689999999862 1112222211 12222222 24789
Q ss_pred eEEEEecCCCCC
Q 014354 234 LVLAFNKTDVAQ 245 (426)
Q Consensus 234 ~IlVlNKiDl~~ 245 (426)
+|||+||+|+..
T Consensus 253 iiLvgNK~DL~~ 264 (354)
T 2xtz_A 253 FMLFLNKFDIFE 264 (354)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEEECcchhh
Confidence 999999999743
No 299
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.04 E-value=7.4e-06 Score=73.05 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=26.6
Q ss_pred cccccHHHHHHHHHH-----HhcCCCEEEEcCCCc
Q 014354 147 LFTTKFDEVISLIER-----RADHLDYVLVDTPGQ 176 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~-----~~~~~~~~liDTPGi 176 (426)
.+|+++++++.++.+ +..+++++|+|.+|-
T Consensus 76 ~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp 110 (178)
T 1ye8_A 76 NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGK 110 (178)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCST
T ss_pred CcCHHHHHHHHHHhhccccccccCCCEEEEeCCCC
Confidence 478999999999996 889999999999663
No 300
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.04 E-value=4.7e-06 Score=92.09 Aligned_cols=112 Identities=15% Similarity=0.151 Sum_probs=69.0
Q ss_pred CCCcCCCCeEEEEEcCCCCCHHHHHHHHHccccc-----CCceEEEeccCcccccccccc---ccch--h-hhHHHHHHH
Q 014354 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDPAVMTLPFAA---NIDI--R-DTIRYKEVM 130 (426)
Q Consensus 62 ~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~-----~~~~~~i~~~d~~v~~~~~~t---~i~~--r-~~~~~~~~~ 130 (426)
.+....++.+++|+|++|||||||++.|.+.... ...+...+..++.. ..+..+ ++.. . ...++.+++
T Consensus 454 vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~-~~~~ltv~e~l~~~~~~~~~~v~~~L 532 (986)
T 2iw3_A 454 TQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDG-THSDTSVLDFVFESGVGTKEAIKDKL 532 (986)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCC-CCTTSBHHHHHHTTCSSCHHHHHHHH
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccc-cccCCcHHHHHHHhhcCHHHHHHHHH
Confidence 3444567789999999999999999999953221 01112222111100 001111 0100 0 023456788
Q ss_pred HHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 131 KQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 131 ~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
+.+|+... -.-.....||+|+++++.+++++..+++++|+|.|-
T Consensus 533 ~~lgL~~~-~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPT 576 (986)
T 2iw3_A 533 IEFGFTDE-MIAMPISALSGGWKMKLALARAVLRNADILLLDEPT 576 (986)
T ss_dssp HHTTCCHH-HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred HHcCCChh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 89987421 011223458999999999999999999999999994
No 301
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.04 E-value=2.1e-06 Score=94.93 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=36.4
Q ss_pred CCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEe
Q 014354 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM 103 (426)
Q Consensus 60 ~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~ 103 (426)
.+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.
T Consensus 690 ~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~ 733 (986)
T 2iw3_A 690 TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH 733 (986)
T ss_dssp EEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEEC
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEc
Confidence 34455567788999999999999999999999988777777653
No 302
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=98.02 E-value=3.2e-05 Score=72.21 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=32.5
Q ss_pred eEEEEE-cCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354 70 VIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (426)
Q Consensus 70 ~~v~ii-G~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~ 108 (426)
.+|+|+ +..|+||||+.-.|.......+.++.+++.||.
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIG 42 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 355664 569999999999999988778899999999974
No 303
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=98.01 E-value=8.2e-05 Score=68.69 Aligned_cols=164 Identities=13% Similarity=0.183 Sum_probs=82.9
Q ss_pred CCeEEEEE-cCCCCCHHHHHHHHHcccccC-CceEEEeccCcccccccccc-----ccchhhhHH----HHH-HHHHcC-
Q 014354 68 KPVIIIVV-GMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAA-----NIDIRDTIR----YKE-VMKQFN- 134 (426)
Q Consensus 68 ~~~~v~ii-G~~gaGKSTLln~L~~~~~~~-~~~~~i~~~d~~v~~~~~~t-----~i~~r~~~~----~~~-~~~~~~- 134 (426)
++.+|+|+ +..|+||||+.-.|....... +.++.+++.||........- ...+.+... .+. ......
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 82 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMVQ 82 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHSE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHhE
Confidence 34556666 569999999999999988777 89999999997522221110 001111110 000 000000
Q ss_pred -CCCCCCccccccccc----ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354 135 -LGPNGGILTSLNLFT----TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR 209 (426)
Q Consensus 135 -l~~ng~i~~~~~~ls----~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~ 209 (426)
..++-.++.....+. -....+..++..+...++++|||||+..... ....+ ..+|.+++|+....
T Consensus 83 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD~p~~~~~~--------~~~~l--~~ad~viiv~~~~~ 152 (245)
T 3ea0_A 83 HISPSLDLIPSPATFEKIVNIEPERVSDLIHIAASFYDYIIVDFGASIDHV--------GVWVL--EHLDELCIVTTPSL 152 (245)
T ss_dssp EEETTEEEECCCSSHHHHHHCCHHHHHHHHHHHHHHCSEEEEEEESSCCTT--------HHHHG--GGCSEEEEEECSSH
T ss_pred ecCCCeEEEcCCCChHhhhcCCHHHHHHHHHHHHhhCCEEEEeCCCCCchH--------HHHHH--HHCCEEEEEecCcH
Confidence 001111111100000 0012223333344457999999999865421 11111 34799999988742
Q ss_pred CCCchhhhhhHHHHHHHHhhcc---CCeEEEEecCCCCCh
Q 014354 210 SANPMTFMSNMLYACSILYKTR---LPLVLAFNKTDVAQH 246 (426)
Q Consensus 210 ~~~~~~~~~~~l~~~~~l~~~~---~P~IlVlNKiDl~~~ 246 (426)
.. .......+..+...+ ...-+|+||++....
T Consensus 153 ----~~-~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~ 187 (245)
T 3ea0_A 153 ----QS-LRRAGQLLKLCKEFEKPISRIEIILNRADTNSR 187 (245)
T ss_dssp ----HH-HHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT
T ss_pred ----HH-HHHHHHHHHHHHHhCCCccceEEEEecCCCCCC
Confidence 11 111122334444444 336789999986543
No 304
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.00 E-value=8.4e-07 Score=86.44 Aligned_cols=107 Identities=17% Similarity=0.182 Sum_probs=68.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCC--ceEEEeccCccccccccc--ccc------c---hhhhHHHHHHHHH
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN--IRGYVMNLDPAVMTLPFA--ANI------D---IRDTIRYKEVMKQ 132 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~--~~~~i~~~d~~v~~~~~~--t~i------~---~r~~~~~~~~~~~ 132 (426)
..++.+|+|+|++|||||||++.|.+...+.. ..+.++..++..- +.+ .++ + ..+...+.+.++.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~--~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~ 164 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLY--PNAELQRRNLMHRKGFPESYNRRALMRFVTS 164 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBC--CHHHHHHTTCTTCTTSGGGBCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCC--cccHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 45788999999999999999999999876542 3455555553221 110 000 0 0112334566666
Q ss_pred cCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcc
Q 014354 133 FNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI 177 (426)
Q Consensus 133 ~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~ 177 (426)
++.+ ..-.....||+++++++.++.++..+++++|+|.|-..
T Consensus 165 l~~~---~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~ 206 (312)
T 3aez_A 165 VKSG---SDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVL 206 (312)
T ss_dssp HHTT---CSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTT
T ss_pred hCCC---cccCCcccCChhhhhhhhhHHHhccCCCEEEECCcccc
Confidence 6611 11122345888888888777777788899999998654
No 305
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.96 E-value=0.00016 Score=67.99 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=33.6
Q ss_pred CCCCeEEEEE-cCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354 66 KRKPVIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (426)
Q Consensus 66 ~~~~~~v~ii-G~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~ 108 (426)
.+++.+|+|+ |..|+||||+.-.|..... .+.++.+++.||.
T Consensus 24 ~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 24 NKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp --CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 3455667664 5699999999999998887 8899999999975
No 306
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.95 E-value=1.3e-05 Score=75.94 Aligned_cols=85 Identities=18% Similarity=0.129 Sum_probs=54.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccC-CceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~-~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
.++.+++|+|++|||||||++.|++...+. .+.+.+.+.+... .+... +.+... ..+++.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~--~~~~~-~~~v~q-------~~~gl~--------- 83 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY--VFKHK-KSIVNQ-------REVGED--------- 83 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCS--CCCCS-SSEEEE-------EEBTTT---------
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCccee--ecCCc-ceeeeH-------HHhCCC---------
Confidence 466789999999999999999999987665 6777776654321 11110 000000 001110
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
. ...++.++.++..+++++++|.|-
T Consensus 84 ---~--~~l~~~la~aL~~~p~illlDEp~ 108 (261)
T 2eyu_A 84 ---T--KSFADALRAALREDPDVIFVGEMR 108 (261)
T ss_dssp ---B--SCHHHHHHHHHHHCCSEEEESCCC
T ss_pred ---H--HHHHHHHHHHHhhCCCEEEeCCCC
Confidence 0 112567788888899999999996
No 307
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.94 E-value=7.1e-05 Score=70.42 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=32.6
Q ss_pred eEEEE-EcCCCCCHHHHHHHHHcccccCCceEEEeccCccc
Q 014354 70 VIIIV-VGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV 109 (426)
Q Consensus 70 ~~v~i-iG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v 109 (426)
.+|+| .|..|+||||+.-.|.......+.++.+++.||..
T Consensus 19 ~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 19 SRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp CEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 34555 46789999999999998877778899999999754
No 308
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.92 E-value=4.2e-05 Score=74.96 Aligned_cols=82 Identities=13% Similarity=0.151 Sum_probs=58.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
++..++|+|++|||||||++.|++...+..+.+.+-+.+ .. ..+.. ++.+ +++.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~-e~-~~~~~-----~~~i---------------~~~~---- 223 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE-EI-VFKHH-----KNYT---------------QLFF---- 223 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC-CC-CCSSC-----SSEE---------------EEEC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee-cc-ccccc-----hhEE---------------EEEe----
Confidence 456799999999999999999999987777777665432 11 01100 0000 1111
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCc
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi 176 (426)
.++++++..++.++..+++++++|.|--
T Consensus 224 -ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 224 -GGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp -BTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred -CCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 1678899999999999999999999864
No 309
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.91 E-value=1.7e-05 Score=80.81 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCH 92 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~ 92 (426)
.+..+|+|+|++++|||||||+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45679999999999999999999986
No 310
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.91 E-value=9.3e-05 Score=67.37 Aligned_cols=129 Identities=14% Similarity=0.102 Sum_probs=75.6
Q ss_pred EEE-EcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354 72 IIV-VGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (426)
Q Consensus 72 v~i-iG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~ 150 (426)
|+| .+..|+||||+.-.|.......+ ++.+++.||.-+. .. ++..-.+ |. ..++.
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~---------~~------~~~~~~l-~~-------~vi~~ 58 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSA---------TG------WGKRGSL-PF-------KVVDE 58 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHH---------HH------HHHHSCC-SS-------EEEEG
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCH---------HH------HhcCCCC-Cc-------ceeCH
Confidence 444 57899999999999998877777 9999998874210 11 1111000 00 11221
Q ss_pred cHHHHHHHHHHHhcCCCEEEEcCCCc-ccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354 151 KFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~liDTPGi-~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~ 229 (426)
. .+..+...++++|||||+. ... .....+ ..+|.+|+++.... .... .....+..+..
T Consensus 59 ~------~l~~l~~~yD~viiD~p~~~~~~--------~~~~~l--~~aD~viiv~~~~~----~~~~-~~~~~~~~l~~ 117 (209)
T 3cwq_A 59 R------QAAKYAPKYQNIVIDTQARPEDE--------DLEALA--DGCDLLVIPSTPDA----LALD-ALMLTIETLQK 117 (209)
T ss_dssp G------GHHHHGGGCSEEEEEEECCCSSS--------HHHHHH--HTSSEEEEEECSSH----HHHH-HHHHHHHHHHH
T ss_pred H------HHHHhhhcCCEEEEeCCCCcCcH--------HHHHHH--HHCCEEEEEecCCc----hhHH-HHHHHHHHHHh
Confidence 1 1222356799999999987 443 111222 34689999888742 1111 11222333333
Q ss_pred -ccCCeEEEEecCCCCC
Q 014354 230 -TRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 230 -~~~P~IlVlNKiDl~~ 245 (426)
.+.+..+|+|+++...
T Consensus 118 ~~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 118 LGNNRFRILLTIIPPYP 134 (209)
T ss_dssp TCSSSEEEEECSBCCTT
T ss_pred ccCCCEEEEEEecCCcc
Confidence 2678889999999765
No 311
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.89 E-value=1.6e-05 Score=75.42 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=54.9
Q ss_pred cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHH
Q 014354 196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN 275 (426)
Q Consensus 196 ~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 275 (426)
..+|+++.|+|+.......... + . +. ++|.|+|+||+|++.......|.+.++.
T Consensus 20 ~~~D~vl~VvDar~P~~~~~~~---l---~-ll--~k~~iivlNK~DL~~~~~~~~~~~~~~~----------------- 73 (262)
T 3cnl_A 20 RLVNTVVEVRDARAPFATSAYG---V---D-FS--RKETIILLNKVDIADEKTTKKWVEFFKK----------------- 73 (262)
T ss_dssp TTCSEEEEEEETTSTTTTSCTT---S---C-CT--TSEEEEEEECGGGSCHHHHHHHHHHHHH-----------------
T ss_pred hhCCEEEEEeeCCCCCcCcChH---H---H-hc--CCCcEEEEECccCCCHHHHHHHHHHHHH-----------------
Confidence 4579999999998765543211 1 1 11 8999999999999987654445443320
Q ss_pred HhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354 276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES 311 (426)
Q Consensus 276 ~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~ 311 (426)
...++ .+||.+|.|+..|++.+...
T Consensus 74 ----------~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 ----------QGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp ----------TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred ----------cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 12356 89999999999998877543
No 312
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.88 E-value=6.3e-05 Score=80.60 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=33.8
Q ss_pred HHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCC--EEEEcCCC
Q 014354 130 MKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLD--YVLVDTPG 175 (426)
Q Consensus 130 ~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~--~~liDTPG 175 (426)
++.+++.... .-.....||+|+++++.+|+++..+++ ++|+|.|-
T Consensus 186 l~~~gL~~~~-~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPt 232 (670)
T 3ux8_A 186 LQNVGLDYLT-LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPS 232 (670)
T ss_dssp HHHTTCTTCC-TTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTT
T ss_pred HHHcCCchhh-hcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCc
Confidence 6667765321 112234599999999999999999888 99999993
No 313
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.87 E-value=7e-05 Score=71.65 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=32.4
Q ss_pred EEEEE---cCCCCCHHHHHHHHHcccccCCceEEEeccCccc
Q 014354 71 IIIVV---GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV 109 (426)
Q Consensus 71 ~v~ii---G~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v 109 (426)
+|+|+ +..|+||||+.-.|.......+.++.+++.||.-
T Consensus 36 ~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 36 AIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp CEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 45555 4899999999999998877778899999999753
No 314
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.84 E-value=6.6e-05 Score=80.47 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=34.1
Q ss_pred HHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCC---CEEEEcCC
Q 014354 127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHL---DYVLVDTP 174 (426)
Q Consensus 127 ~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~---~~~liDTP 174 (426)
.+.+..+++... ..-.....||+|++|++.+|+++..++ +++|+|.|
T Consensus 524 ~~~l~~~~l~~~-~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEP 573 (670)
T 3ux8_A 524 LETLYDVGLGYM-KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEP 573 (670)
T ss_dssp HHHHHHTTCTTS-BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEEST
T ss_pred HHHHHHcCCchh-hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCC
Confidence 455667776532 111223469999999999999998766 59999999
No 315
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=97.83 E-value=0.00016 Score=68.00 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV 109 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v 109 (426)
.+|+|.|..|+||||+.-.|.......+.++.+++.||..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 3677789999999999999998887788899999999754
No 316
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=97.82 E-value=9.2e-05 Score=69.40 Aligned_cols=41 Identities=29% Similarity=0.292 Sum_probs=34.2
Q ss_pred CCeEEEEE-cCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354 68 KPVIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (426)
Q Consensus 68 ~~~~v~ii-G~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~ 108 (426)
+..+|+|+ +..|+||||+.-.|.......+.++.+++.||.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 44567776 578999999999999887777889999999974
No 317
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=97.82 E-value=0.0002 Score=66.93 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=31.7
Q ss_pred EEEE-EcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354 71 IIIV-VGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (426)
Q Consensus 71 ~v~i-iG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~ 108 (426)
+|+| .|..|+||||+.-.|.......+.++.+++.|+.
T Consensus 4 ~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (263)
T 1hyq_A 4 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT 42 (263)
T ss_dssp EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4444 5789999999999999887777889999999874
No 318
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.81 E-value=2.1e-05 Score=76.93 Aligned_cols=135 Identities=16% Similarity=0.130 Sum_probs=67.0
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCC-------CCCCchhhhhhHHHHHHHHh----hccCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTP-------RSANPMTFMSNMLYACSILY----KTRLP 233 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~-------~~~~~~~~~~~~l~~~~~l~----~~~~P 233 (426)
+..+.+|||+|+..+.... ...+ ..++++|+|+|.+ ...+...+... +..+..+. ..++|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w------~~yf--~~~~~iIfV~dls~ydq~l~d~~~~nr~~es-~~~~~~i~~~~~~~~~~ 236 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKW------IHCF--ENVTSIMFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSS 236 (327)
T ss_dssp TEEEEEEEECCSHHHHTTG------GGGC--SSCSEEEEEEEGGGGGCBCSSCTTSBHHHHH-HHHHHHHHTSGGGTTCE
T ss_pred ceeeEEEEcCCchhHHHHH------HHHh--CCCCEEEEEEECccccccccccccHhHHHHH-HHHHHHHhhhhccCCce
Confidence 3567899999997642100 0111 2378999999775 22222222211 12222222 24789
Q ss_pred eEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-------hcCCceEEeecccCCCHHHHHH
Q 014354 234 LVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-------YKNLKSVGVSSVSGAGIEAYFK 306 (426)
Q Consensus 234 ~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~vv~vSA~~g~gv~~l~~ 306 (426)
+||++||+|+....... . .+...+..-.+...........+...| ...+.++.+||+.+.||..+|.
T Consensus 237 iiL~~NK~DL~~~ki~~---~---~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 237 VILFLNKKDLLEEKIMY---S---HLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 310 (327)
T ss_dssp EEEEEECHHHHHHHTTT---S---CGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred EEEEEECchhhhhhhcc---c---hHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence 99999999975432000 0 000000000000000000000000000 1224578899999999999999
Q ss_pred HHHHHHHH
Q 014354 307 AVEESAQE 314 (426)
Q Consensus 307 ~l~~~~~~ 314 (426)
.+...+..
T Consensus 311 ~v~~~Il~ 318 (327)
T 3ohm_A 311 AVKDTILQ 318 (327)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99876654
No 319
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.81 E-value=1.6e-05 Score=79.85 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=42.3
Q ss_pred CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCC-------chhhhhhHHHHHHHHh----hccCC
Q 014354 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN-------PMTFMSNMLYACSILY----KTRLP 233 (426)
Q Consensus 165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~-------~~~~~~~~l~~~~~l~----~~~~P 233 (426)
+..+.||||+|+..+.... ...+ ..++++|||+|.+..-. ...+.. ...++..+. ..++|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w------~~yf--~~a~~iIfV~dis~ydq~l~ed~~~ns~~e-~~~~~~~i~~~~~~~~~p 286 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKW------IQCF--NDVTAIIFVVASSSYNMVIREDNQTNRLQE-ALNLFKSIWNNRWLRTIS 286 (402)
T ss_dssp TEEEEEEEECCSGGGGGGG------GGGT--TTCCEEEEEEETTGGGCBCTTTSCSBHHHH-HHHHHHHHHTCTTCSSCC
T ss_pred Cccceecccchhhhhhhhh------Hhhc--cCCCEEEEEEECcccccccccccccchHHH-HHHHHHHHHhcccCCCCe
Confidence 3568899999997752111 1111 24789999999976210 112221 122222222 24689
Q ss_pred eEEEEecCCCC
Q 014354 234 LVLAFNKTDVA 244 (426)
Q Consensus 234 ~IlVlNKiDl~ 244 (426)
+|||+||+|+.
T Consensus 287 iiLvgNK~DL~ 297 (402)
T 1azs_C 287 VILFLNKQDLL 297 (402)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEEEChhhh
Confidence 99999999974
No 320
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.80 E-value=2.9e-05 Score=76.91 Aligned_cols=85 Identities=13% Similarity=0.091 Sum_probs=50.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccC-CceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~-~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~ 145 (426)
.+...|+|+|++|||||||++.|++...+. ++.+..+...... ..+.. .+.+...
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~-~~~~~-----------------------~~~v~q~ 176 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF-VHESK-----------------------KCLVNQR 176 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS-CCCCS-----------------------SSEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh-hhhcc-----------------------ccceeee
Confidence 355699999999999999999999987665 4555444332211 11100 0111000
Q ss_pred ccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354 146 NLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (426)
Q Consensus 146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPG 175 (426)
............++.++..+++++++|.|-
T Consensus 177 ~~~~~~~~~~~~La~aL~~~PdvillDEp~ 206 (356)
T 3jvv_A 177 EVHRDTLGFSEALRSALREDPDIILVGEMR 206 (356)
T ss_dssp EBTTTBSCHHHHHHHHTTSCCSEEEESCCC
T ss_pred eeccccCCHHHHHHHHhhhCcCEEecCCCC
Confidence 000111222336777888999999999996
No 321
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=97.79 E-value=0.00025 Score=65.08 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=32.1
Q ss_pred eEEEEE-cCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354 70 VIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (426)
Q Consensus 70 ~~v~ii-G~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~ 108 (426)
.+|+|+ +..|+||||+.-.|.......+.++.+++.|+.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT 42 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 355555 568999999999999887777889999999874
No 322
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.71 E-value=5.4e-05 Score=74.35 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=23.1
Q ss_pred CceEEeecccCCCHHHHHHHHHHHHHH
Q 014354 288 LKSVGVSSVSGAGIEAYFKAVEESAQE 314 (426)
Q Consensus 288 ~~vv~vSA~~g~gv~~l~~~l~~~~~~ 314 (426)
+.+..+||+.+.+|..+|..+...+..
T Consensus 302 iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 302 VYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 457899999999999999998877654
No 323
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.71 E-value=8.9e-05 Score=73.71 Aligned_cols=85 Identities=21% Similarity=0.336 Sum_probs=53.8
Q ss_pred CcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHh----HHHHHHHHHHHHHHhccccchhhhH
Q 014354 198 PTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF----ALEWMQDFEVFQAAISSDHSYTSTL 273 (426)
Q Consensus 198 ~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~ 273 (426)
++++++|+|++.... .+..... ..+ .++|.++|+||+|+..... ..+|.... ..
T Consensus 72 ~~lil~VvD~~d~~~--s~~~~l~---~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~---~~------------ 129 (369)
T 3ec1_A 72 KALVVNIVDIFDFNG--SFIPGLP---RFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRM---AE------------ 129 (369)
T ss_dssp CCEEEEEEETTCSGG--GCCSSHH---HHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHH---HH------------
T ss_pred CcEEEEEEECCCCCC--chhhHHH---HHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHH---HH------------
Confidence 579999999986542 2222111 111 2789999999999987532 22222111 00
Q ss_pred HHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354 274 TNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA 312 (426)
Q Consensus 274 ~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~ 312 (426)
.. -+...+++.+||++|.|+.+|++.+.+..
T Consensus 130 --~~------g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 --EL------GLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp --TT------TCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred --Hc------CCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 00 01113689999999999999999987654
No 324
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=97.68 E-value=0.00034 Score=66.61 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV 109 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v 109 (426)
.+|+|.|..|+||||+.-.|.......+.++.+++.||..
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~ 42 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA 42 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4677889999999999999998887778899999999753
No 325
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.68 E-value=1e-05 Score=70.75 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=29.6
Q ss_pred CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceE
Q 014354 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG 100 (426)
Q Consensus 64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~ 100 (426)
...+++.+++|+|++|||||||++.|++.. +..+.+
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V 63 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNV 63 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeE
Confidence 334677899999999999999999999987 654443
No 326
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.66 E-value=6.5e-05 Score=68.47 Aligned_cols=29 Identities=38% Similarity=0.444 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~ 94 (426)
.+++.+++|+|++|||||||++.|++...
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34677999999999999999999998543
No 327
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.65 E-value=8e-05 Score=74.05 Aligned_cols=86 Identities=21% Similarity=0.213 Sum_probs=53.0
Q ss_pred CCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHh----HHHHHHHHHHHHHHhccccchhhh
Q 014354 197 FPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF----ALEWMQDFEVFQAAISSDHSYTST 272 (426)
Q Consensus 197 ~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~ 272 (426)
.++++++|+|++... ..+... + ..+ ..++|.++|+||+|+..... ..+|..... .
T Consensus 69 ~~~~il~VvD~~d~~--~~~~~~-l---~~~-~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~---~----------- 127 (368)
T 3h2y_A 69 SDALVVKIVDIFDFN--GSWLPG-L---HRF-VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSA---K----------- 127 (368)
T ss_dssp SCCEEEEEEETTSHH--HHCCTT-H---HHH-SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHH---H-----------
T ss_pred cCcEEEEEEECCCCc--ccHHHH-H---HHH-hCCCcEEEEEEChhcCCcccCHHHHHHHHHHHH---H-----------
Confidence 357999999997521 111111 1 111 13789999999999986542 222221110 0
Q ss_pred HHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354 273 LTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA 312 (426)
Q Consensus 273 ~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~ 312 (426)
.. -+...+++.+||++|.|+.+|++.|.+..
T Consensus 128 ---~~------g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 ---QL------GLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp ---HT------TCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---Hc------CCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 00 01123689999999999999999987654
No 328
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.60 E-value=0.012 Score=56.91 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=35.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~ 108 (426)
..++++.|.+|+||||+.-.|.......+.++.++..||+
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 53 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPA 53 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 3678888999999999999999887778999999999974
No 329
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.57 E-value=0.0004 Score=60.72 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
.++.+|+|+|++|||||||++.|.+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998764
No 330
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=97.56 E-value=0.00041 Score=66.13 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=32.2
Q ss_pred eEEEEE-cCCCCCHHHHHHHHHcccccCCceEEEeccCc
Q 014354 70 VIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (426)
Q Consensus 70 ~~v~ii-G~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~ 107 (426)
.+|+|+ +..|+||||+.-.|.......+.++.+++.||
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 356665 57999999999999988877888999999998
No 331
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.55 E-value=0.00051 Score=62.32 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=31.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d 106 (426)
+++.+++|+|+||+|||||++.|++.....++.+.+++.+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 3567899999999999999999998766666666665543
No 332
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.53 E-value=6.6e-05 Score=72.76 Aligned_cols=84 Identities=7% Similarity=0.080 Sum_probs=54.7
Q ss_pred hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHh----HHHHHHHHHHHHHHhccccchh
Q 014354 195 STFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF----ALEWMQDFEVFQAAISSDHSYT 270 (426)
Q Consensus 195 ~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~----~~~~~~~~~~l~~~~~~~~~~~ 270 (426)
.+.+|++++|+|+........++.. ++..+...++|.|||+||+|+..... +..|.+.+..
T Consensus 84 ~anvD~v~~V~~~~~p~~~~~~i~r---~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~------------ 148 (307)
T 1t9h_A 84 ICNVDQAVLVFSAVQPSFSTALLDR---FLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN------------ 148 (307)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHH---HHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH------------
T ss_pred HHhCCEEEEEEeCCCCCCCHHHHHH---HHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHh------------
Confidence 3568999999999865554443321 22223457899999999999998743 2334332221
Q ss_pred hhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354 271 STLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (426)
Q Consensus 271 ~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l 308 (426)
...+++.+||.+|.|+++|+..+
T Consensus 149 ---------------~g~~v~~~sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 149 ---------------IGYDVYLTSSKDQDSLADIIPHF 171 (307)
T ss_dssp ---------------HTCCEEECCHHHHTTCTTTGGGG
T ss_pred ---------------CCCeEEEEecCCCCCHHHHHhhc
Confidence 12468888888888887776544
No 333
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.53 E-value=0.00036 Score=66.14 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=24.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~ 94 (426)
..++.+++|+|+||+|||||+..|++...
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 34677999999999999999999998543
No 334
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.52 E-value=2.8e-05 Score=75.40 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccC
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR 96 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~ 96 (426)
.++.+++|+|++|||||||+|.|++.....
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~ 200 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISPELGLR 200 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC-----
T ss_pred cCCCEEEEECCCCCCHHHHHHHhccccccc
Confidence 356799999999999999999999976543
No 335
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.52 E-value=1.2e-05 Score=77.77 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=28.6
Q ss_pred CCCCcCCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 61 ~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
+.+...+++.+++|+|++|||||||++.|++..
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344556788899999999999999999999987
No 336
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.52 E-value=0.00039 Score=59.83 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCC
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRN 97 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~ 97 (426)
++..++|+|++|+|||||++.+.+.....+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g 64 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG 64 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 456799999999999999999999875543
No 337
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.52 E-value=0.00014 Score=72.93 Aligned_cols=28 Identities=11% Similarity=-0.128 Sum_probs=26.1
Q ss_pred ccccHHHHHHHHHHHhcCC--CEEEEcCCC
Q 014354 148 FTTKFDEVISLIERRADHL--DYVLVDTPG 175 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~--~~~liDTPG 175 (426)
+|+|.++++.++.++..++ +++|+|.|-
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt 325 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVD 325 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 6999999999999999999 999999983
No 338
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.50 E-value=0.0007 Score=64.63 Aligned_cols=43 Identities=21% Similarity=0.204 Sum_probs=33.6
Q ss_pred CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccC-CceEEEeccC
Q 014354 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLD 106 (426)
Q Consensus 64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~-~~~~~i~~~d 106 (426)
....++.+++|+|+||+|||||++.|++..... +..+.++...
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 445677899999999999999999999987665 4366555443
No 339
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.49 E-value=0.00014 Score=65.69 Aligned_cols=38 Identities=21% Similarity=0.103 Sum_probs=28.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d 106 (426)
.+++.+++|+|+||+|||||+..|++ ..+..+.++...
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~ 54 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTE 54 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESS
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECC
Confidence 34567899999999999999999998 334455555443
No 340
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.48 E-value=0.00013 Score=72.68 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccC-CceEEEecc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNL 105 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~-~~~~~i~~~ 105 (426)
.++..|+|+|++|||||||++.|++...+. .+.+.+++.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 456789999999999999999999987665 566666554
No 341
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.45 E-value=4.9e-05 Score=69.75 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=24.8
Q ss_pred CCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 58 AGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 58 ~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
...+.+....++.+++|+|++|||||||++.|++..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356677777788899999999999999999999976
No 342
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=97.41 E-value=0.01 Score=62.35 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=35.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~ 108 (426)
...++++.|.+|+||||+.-.|.......|.++.++..||.
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~ 47 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA 47 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 45678899999999999999999887778889999999963
No 343
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.38 E-value=0.00052 Score=62.58 Aligned_cols=90 Identities=8% Similarity=0.021 Sum_probs=53.6
Q ss_pred CcEEEEEEeCCCCCCchhhhhhHHHH-HHHHhh----ccCCeEEEEecC-CCCChHhHHHHHHHHHHHHHHhccccchhh
Q 014354 198 PTVVTYVVDTPRSANPMTFMSNMLYA-CSILYK----TRLPLVLAFNKT-DVAQHEFALEWMQDFEVFQAAISSDHSYTS 271 (426)
Q Consensus 198 ~d~vl~VVDa~~~~~~~~~~~~~l~~-~~~l~~----~~~P~IlVlNKi-Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 271 (426)
+|.+|||||+....... ....+.. ..++.. .+.|++|+.||. |+...-...++.+.+.
T Consensus 126 TdglIfVVDSsD~~R~e--ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~-------------- 189 (227)
T 3l82_B 126 VDGFIYVANAEAHKRHE--WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH-------------- 189 (227)
T ss_dssp CSEEEEEEECBTTCCCC--HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTT--------------
T ss_pred CCEEEEEeccccHhHHH--HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcC--------------
Confidence 59999999997543211 1111111 122221 467999999996 6755433333333221
Q ss_pred hHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354 272 TLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA 312 (426)
Q Consensus 272 ~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~ 312 (426)
+ ........+.++||++|+|+.+-++||...+
T Consensus 190 -------L--~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 190 -------L--NLLNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp -------G--GGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred -------C--cCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 0 0111234599999999999999999997654
No 344
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=97.38 E-value=0.0088 Score=58.76 Aligned_cols=41 Identities=29% Similarity=0.314 Sum_probs=35.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccc--cCCceEEEeccCcc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVMNLDPA 108 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~--~~~~~~~i~~~d~~ 108 (426)
...++++.|..|+||||+.-.|..... ..+.++.++..||.
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 346788999999999999999998877 78899999999864
No 345
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.37 E-value=0.00011 Score=66.51 Aligned_cols=30 Identities=23% Similarity=0.407 Sum_probs=26.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccC
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR 96 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~ 96 (426)
.++.+|+|+|++|||||||++.|.+...+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~ 49 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQ 49 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 467899999999999999999999987644
No 346
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=97.37 E-value=0.013 Score=57.37 Aligned_cols=41 Identities=24% Similarity=0.326 Sum_probs=35.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~ 108 (426)
...++++.|.+|+||||+.-.|.......+.++.++..||.
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 34567788999999999999999887778899999999974
No 347
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.36 E-value=0.00092 Score=69.43 Aligned_cols=101 Identities=20% Similarity=0.125 Sum_probs=59.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceE-EEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG-YVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~-~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~ 144 (426)
..++.+++|+|++|+|||||+..|++.....+.++ ++...++..........+. ....+ +...++..-. ...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g----~~~~~-~~~~g~~~~~--~~~ 350 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWG----MDFEE-MERQNLLKIV--CAY 350 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTS----CCHHH-HHHTTSEEEC--CCC
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcC----CCHHH-HHhCCCEEEE--Eec
Confidence 34677999999999999999999999876655443 4433322100000000000 00111 1111111000 011
Q ss_pred cccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354 145 LNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (426)
Q Consensus 145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTP 174 (426)
...+|.+..+++.++.+...+++++|+| |
T Consensus 351 p~~LS~g~~q~~~~a~~l~~~p~llilD-p 379 (525)
T 1tf7_A 351 PESAGLEDHLQIIKSEINDFKPARIAID-S 379 (525)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEE-C
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEc-C
Confidence 2347899999999999999999999999 7
No 348
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.35 E-value=0.00013 Score=64.42 Aligned_cols=41 Identities=27% Similarity=0.233 Sum_probs=34.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~ 108 (426)
+.++++|+|++|||||||+++|+......+.+++++..++.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 35689999999999999999999987777788888887764
No 349
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.33 E-value=0.00014 Score=64.44 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~ 107 (426)
..++++|+|++|||||||+++|++.....+.++.++..++
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 3568999999999999999999998666666777766654
No 350
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.33 E-value=0.00047 Score=76.26 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHH
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRL 89 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L 89 (426)
..++.+++|+|++|+||||||+.+
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHH
Confidence 345679999999999999999999
No 351
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.33 E-value=0.00017 Score=63.85 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCH 92 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~ 92 (426)
.++.+++|+|+||||||||++.|.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 45678999999999999999999987
No 352
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.29 E-value=0.00093 Score=65.98 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=49.9
Q ss_pred cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHh---HHHHHHHHHHHHHHhccccchhhh
Q 014354 196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF---ALEWMQDFEVFQAAISSDHSYTST 272 (426)
Q Consensus 196 ~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~ 272 (426)
+..|++++| ++........++. .++......++|.|||+||+|+..... ...|...+.
T Consensus 129 anvD~v~iv-~a~~P~~~~~~i~---r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~--------------- 189 (358)
T 2rcn_A 129 ANIDQIVIV-SAILPELSLNIID---RYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR--------------- 189 (358)
T ss_dssp ECCCEEEEE-EESTTTCCHHHHH---HHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHH---------------
T ss_pred hcCCEEEEE-EeCCCCCCHHHHH---HHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHH---------------
Confidence 557888865 5543222222211 112223356899999999999998753 222322221
Q ss_pred HHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354 273 LTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV 308 (426)
Q Consensus 273 ~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l 308 (426)
. ...+++.+||.+|.|+.+|...+
T Consensus 190 ----------~--~G~~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 190 ----------N--IGYRVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp ----------T--TTCCEEECBTTTTBTHHHHHHHH
T ss_pred ----------h--CCCcEEEEecCCCcCHHHHHHhc
Confidence 0 12469999999999999887654
No 353
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.28 E-value=0.0013 Score=63.70 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=30.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEecc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL 105 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~ 105 (426)
..++-.++|.|+||+|||||+..++......+..+.++..
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 4567799999999999999999998765444455555443
No 354
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.28 E-value=0.00014 Score=65.21 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
++.+++|+|++|||||||++.|.+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 46789999999999999999999874
No 355
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.27 E-value=0.00013 Score=65.99 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=24.3
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
...++.+++|+|++|||||||++.|++..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34567899999999999999999999976
No 356
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.27 E-value=0.0024 Score=62.56 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=32.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d 106 (426)
..++-.++|.|+||+|||||+..++......+..+.++...
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 45667899999999999999999988765566677666544
No 357
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=97.26 E-value=0.014 Score=56.90 Aligned_cols=40 Identities=30% Similarity=0.286 Sum_probs=35.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~ 108 (426)
..++++.|..|+||||+.-.|.......+.++.++..||.
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~ 55 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPA 55 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSS
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4578889999999999999999888778899999999964
No 358
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.25 E-value=0.00059 Score=75.27 Aligned_cols=97 Identities=22% Similarity=0.363 Sum_probs=52.0
Q ss_pred CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc
Q 014354 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT 143 (426)
Q Consensus 64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~ 143 (426)
.....+.+++|+|++|+||||||+.+.+..........+ |+-. ..+.+.+. ++..++... .+..
T Consensus 668 l~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~v----pa~~-----~~i~~~d~-----i~~~ig~~d--~l~~ 731 (918)
T 3thx_B 668 LSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYV----PAEE-----ATIGIVDG-----IFTRMGAAD--NIYK 731 (918)
T ss_dssp ECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCB----SSSE-----EEEECCSE-----EEEEC----------
T ss_pred ccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccc----cchh-----hhhhHHHH-----HHHhCChHH--HHHH
Confidence 444567899999999999999999986432110000000 0000 00000000 000111111 1122
Q ss_pred ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcc
Q 014354 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI 177 (426)
Q Consensus 144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~ 177 (426)
..+.|+.++.+++.++.+ ...+.++|+|.||-.
T Consensus 732 ~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~G 764 (918)
T 3thx_B 732 GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRG 764 (918)
T ss_dssp --CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTT
T ss_pred hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCC
Confidence 234578899999988876 678999999999853
No 359
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=97.25 E-value=0.0034 Score=61.84 Aligned_cols=40 Identities=30% Similarity=0.326 Sum_probs=35.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccc--cCCceEEEeccCcc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVMNLDPA 108 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~--~~~~~~~i~~~d~~ 108 (426)
..++++.|.+|+||||+.-.|..... ..|.++.++..||+
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 35678889999999999999998887 78899999999975
No 360
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=97.24 E-value=0.0082 Score=54.31 Aligned_cols=33 Identities=21% Similarity=0.135 Sum_probs=26.8
Q ss_pred EEEEEc-CCCCCHHHHHHHHHcccccCCceEEEe
Q 014354 71 IIIVVG-MAGSGKTTFMHRLVCHTQSRNIRGYVM 103 (426)
Q Consensus 71 ~v~iiG-~~gaGKSTLln~L~~~~~~~~~~~~i~ 103 (426)
+|+|+| .+|+||||+.-.|.......|.++.++
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 466666 489999999999998877778788774
No 361
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.21 E-value=0.00025 Score=68.56 Aligned_cols=40 Identities=28% Similarity=0.329 Sum_probs=32.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccc--cCCceEEEeccC
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVMNLD 106 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~--~~~~~~~i~~~d 106 (426)
.++.+|+|+|++|||||||++.|.+... +.++.+.++..|
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d 119 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD 119 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecC
Confidence 4678999999999999999999999765 566667665444
No 362
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.21 E-value=0.00018 Score=63.76 Aligned_cols=26 Identities=15% Similarity=0.410 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
++..++|+|++|||||||++.|.+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999865
No 363
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.20 E-value=0.00013 Score=65.84 Aligned_cols=26 Identities=27% Similarity=0.585 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
++..++|+|++|||||||++.|++..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34579999999999999999999875
No 364
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.15 E-value=0.00065 Score=66.89 Aligned_cols=28 Identities=36% Similarity=0.427 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
.+++.+++|+|+||+|||||+..|++..
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999999875
No 365
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.14 E-value=0.0029 Score=58.34 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=34.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~ 107 (426)
..+|.+.|+||+||||++-.+.......|.++.++..||
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 467999999999999999888888877888888888776
No 366
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.13 E-value=0.00022 Score=65.54 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~ 94 (426)
+++..++|+|++|||||||++.|++...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4667899999999999999999999864
No 367
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.12 E-value=0.0003 Score=63.35 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=32.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d 106 (426)
.++.+|+|+|++|||||||++.|.+.....++.+.+.+.|
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 3567999999999999999999998776566666666554
No 368
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.12 E-value=0.00014 Score=66.86 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=21.0
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHH-ccc
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLV-CHT 93 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~-~~~ 93 (426)
..+.++...++.+++|+|++|||||||++.|. +..
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 44556666778899999999999999999999 764
No 369
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.11 E-value=0.00026 Score=65.85 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=24.9
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
..+.+....++.+|+|+|++|||||||++.|.+..
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45566667788899999999999999999998854
No 370
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.10 E-value=0.0002 Score=63.72 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQ 94 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~ 94 (426)
.+++|+|++|||||||++.|++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999998764
No 371
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=97.10 E-value=0.00059 Score=68.33 Aligned_cols=42 Identities=31% Similarity=0.453 Sum_probs=25.5
Q ss_pred CCCeEEEEE-cCCCCCHHHHHHHHHcccc------cCCceEEEeccCcc
Q 014354 67 RKPVIIIVV-GMAGSGKTTFMHRLVCHTQ------SRNIRGYVMNLDPA 108 (426)
Q Consensus 67 ~~~~~v~ii-G~~gaGKSTLln~L~~~~~------~~~~~~~i~~~d~~ 108 (426)
.++.+|+|+ |..|+||||+.-.|..... ..+.++.+++.||.
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~ 157 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQ 157 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSS
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 345666666 7799999999999887764 35789999999974
No 372
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.06 E-value=0.0028 Score=57.92 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCH 92 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~ 92 (426)
+++.+++|+|+||+|||||+..|++.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35678999999999999999999985
No 373
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.06 E-value=0.00029 Score=63.61 Aligned_cols=38 Identities=32% Similarity=0.420 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~ 107 (426)
.++.+|+|+|++|||||||++.|.+...+ .+.++..++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~ 41 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDH 41 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCc
Confidence 35678999999999999999999997532 344554444
No 374
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=97.06 E-value=0.0027 Score=61.80 Aligned_cols=40 Identities=30% Similarity=0.300 Sum_probs=35.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~ 108 (426)
..++++.|.+|+||||+.-.|.......|.++.++..||.
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3567888999999999999999888788899999999875
No 375
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.04 E-value=0.00034 Score=62.64 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
.++.+|+|+|++|||||||++.|.+..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999999876
No 376
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.04 E-value=0.0016 Score=62.28 Aligned_cols=90 Identities=8% Similarity=0.017 Sum_probs=54.7
Q ss_pred CcEEEEEEeCCCCCCchhhhhhHHHHH-HHHh----hccCCeEEEEec-CCCCChHhHHHHHHHHHHHHHHhccccchhh
Q 014354 198 PTVVTYVVDTPRSANPMTFMSNMLYAC-SILY----KTRLPLVLAFNK-TDVAQHEFALEWMQDFEVFQAAISSDHSYTS 271 (426)
Q Consensus 198 ~d~vl~VVDa~~~~~~~~~~~~~l~~~-~~l~----~~~~P~IlVlNK-iDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 271 (426)
+|.+|||||+....... ....+..+ .++. ..+.|++|..|| -|+...-...++.+.+.
T Consensus 211 tdglIfVVDSsDreRle--ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~-------------- 274 (312)
T 3l2o_B 211 VDGFIYVANAEAHKRHE--WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH-------------- 274 (312)
T ss_dssp CSEEEECCBCBTTCCCC--HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTT--------------
T ss_pred CCEEEEEecCCcHhHHH--HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcC--------------
Confidence 59999999997654321 11111111 2221 247899999997 47765433333333221
Q ss_pred hHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354 272 TLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA 312 (426)
Q Consensus 272 ~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~ 312 (426)
+ ........+.++||++|+|+.+-++||...+
T Consensus 275 -------L--~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 275 -------L--NLLNHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp -------G--GGGCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred -------C--ccCCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 1 0111234599999999999999999998764
No 377
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.03 E-value=0.00036 Score=63.29 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~ 94 (426)
+++..|+|+|++|||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4567899999999999999999998753
No 378
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.02 E-value=0.00036 Score=68.96 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccc-cCCce
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ-SRNIR 99 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~-~~~~~ 99 (426)
++.+++|+|++|||||||+|.|++... ...+.
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~ 246 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTND 246 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccCC
Confidence 456899999999999999999999875 44333
No 379
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.02 E-value=0.00053 Score=66.79 Aligned_cols=41 Identities=24% Similarity=0.239 Sum_probs=31.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHccccc--CCceEEEeccC
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS--RNIRGYVMNLD 106 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~--~~~~~~i~~~d 106 (426)
..++.+|+|+|++|||||||++.|.+.... .++.+.++..|
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 346789999999999999999999887642 34566666555
No 380
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.02 E-value=0.00037 Score=63.09 Aligned_cols=28 Identities=14% Similarity=0.425 Sum_probs=24.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
..++..|+|+|++|||||||+++|++..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3466789999999999999999999875
No 381
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.00 E-value=0.00036 Score=62.69 Aligned_cols=27 Identities=37% Similarity=0.577 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
.++.+|+|+|++|||||||++.|.+..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998865
No 382
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.00 E-value=0.00044 Score=63.68 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=23.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVC 91 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~ 91 (426)
.+++.+++|+|++|||||||++.|++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45678999999999999999999994
No 383
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.99 E-value=0.00048 Score=60.96 Aligned_cols=37 Identities=35% Similarity=0.495 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEe
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM 103 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~ 103 (426)
.++.+|+|+|++||||||+.+.|.......++.+.++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 4678899999999999999999998876555554443
No 384
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.99 E-value=0.0017 Score=63.98 Aligned_cols=92 Identities=15% Similarity=0.226 Sum_probs=55.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
+++.++.|.|+||+|||||+.+++......++.+.++........ . ....+++....-.+.
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~------------~----~a~~lG~~~~~l~i~--- 119 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDP------------E----YAKKLGVDTDSLLVS--- 119 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH------------H----HHHHTTCCGGGCEEE---
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCH------------H----HHHHcCCCHHHeEEe---
Confidence 356789999999999999999998776555666666655432210 0 122344332111111
Q ss_pred cccccHHHHHHHHHHH--hcCCCEEEEcCCCccc
Q 014354 147 LFTTKFDEVISLIERR--ADHLDYVLVDTPGQIE 178 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~--~~~~~~~liDTPGi~e 178 (426)
-....++...++.++ ...++++|||.+...-
T Consensus 120 -~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 120 -QPDTGEQALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp -CCSSHHHHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred -cCCCHHHHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 022345555555544 3458999999998654
No 385
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.98 E-value=0.00058 Score=68.94 Aligned_cols=40 Identities=28% Similarity=0.235 Sum_probs=33.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d 106 (426)
.++..++|+|++||||||||+.|++...+..+.+.+++.+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 3567899999999999999999999887777777777654
No 386
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.97 E-value=0.0046 Score=62.21 Aligned_cols=28 Identities=29% Similarity=0.713 Sum_probs=24.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
...+..|+|+|+|||||||+.++|....
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 4456789999999999999999998754
No 387
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.96 E-value=0.00046 Score=61.98 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=26.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHccccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~ 95 (426)
..++.+|+|+|++|||||||++.|.+....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~ 51 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQ 51 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 346789999999999999999999988653
No 388
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.94 E-value=0.00039 Score=67.00 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceE
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG 100 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~ 100 (426)
.+.+++|+|++|||||||||.|.+...+..+.+
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i 200 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 200 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccccccccce
Confidence 456899999999999999999999876654443
No 389
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=96.92 E-value=0.0026 Score=63.44 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=32.9
Q ss_pred CCCeEEEEE-cCCCCCHHHHHHHHHcccc------cCCceEEEeccCcc
Q 014354 67 RKPVIIIVV-GMAGSGKTTFMHRLVCHTQ------SRNIRGYVMNLDPA 108 (426)
Q Consensus 67 ~~~~~v~ii-G~~gaGKSTLln~L~~~~~------~~~~~~~i~~~d~~ 108 (426)
.++.+|+|+ |..|+||||+.-.|..... ..+.++.+++.||.
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q 154 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ 154 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 345666666 7799999999999987764 35789999999974
No 390
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.91 E-value=0.024 Score=57.32 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=29.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHccccc-CCceEEEecc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-RNIRGYVMNL 105 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~-~~~~~~i~~~ 105 (426)
.+++-.++|.|+||+|||||+..++..... .+..+.++..
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 446678999999999999999999887543 3445555443
No 391
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=96.88 E-value=0.011 Score=54.36 Aligned_cols=160 Identities=13% Similarity=0.209 Sum_probs=80.3
Q ss_pred eEEEEEcC-CCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc-
Q 014354 70 VIIIVVGM-AGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL- 147 (426)
Q Consensus 70 ~~v~iiG~-~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~- 147 (426)
..+.|.|. +|+|||++.-.|+......+.++.... |..+...+... .++ ..+-.....++...-..++...+
T Consensus 5 k~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K--Pv~~g~~~~~~-~~~---~~D~~~~~~~~~~~~~~~~~~~~~ 78 (228)
T 3of5_A 5 KKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK--PVASGQSQFSE-LCE---DVESILNAYKHKFTAAEINLISFN 78 (228)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC--SEEESBCSSSS-SBH---HHHHHHHHTTTSSCHHHHCSEEES
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec--ceeecCccCCC-CCC---hHHHHHHhcCCCCChhhEEEEEEC
Confidence 56788887 999999999999988877777766542 21110000000 000 00001123333210000000000
Q ss_pred --c-----------cccHHHHHHHHHH-HhcCCCEEEEcCCCcc-cccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCC
Q 014354 148 --F-----------TTKFDEVISLIER-RADHLDYVLVDTPGQI-EIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN 212 (426)
Q Consensus 148 --l-----------s~~~~~~~~~~~~-~~~~~~~~liDTPGi~-e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~ 212 (426)
. .-..+.+...... +..+++++|||+||-. .+.........+...+ ..-+|+|+++..+.-
T Consensus 79 ~p~sp~~aa~~~~~~i~~~~i~~~~~~~l~~~~D~vlIEgaggl~~p~~~~~~~adla~~l----~~pviLV~~~~~~~i 154 (228)
T 3of5_A 79 QAVAPHIIAAKTKVDISIENLKQFIEDKYNQDLDILFIEGAGGLLTPYSDHTTQLDLIKAL----QIPVLLVSAIKVGCI 154 (228)
T ss_dssp SSSCHHHHHHHTTCCCCHHHHHHHHHGGGGSSCSEEEEEEEEETTCBSSSSCBHHHHHHHH----TCCEEEEEECSTTHH
T ss_pred CCCCHHHHHHHcCCCCCHHHHHHHHHHHHHccCCEEEEECCCccccccccchhHHHHHHHc----CCCEEEEEcCCcchH
Confidence 0 0133444555554 5678999999999643 2222222223333222 234788888864321
Q ss_pred chhhhhhHHHHHHHHhhccCCeE-EEEecCCCC
Q 014354 213 PMTFMSNMLYACSILYKTRLPLV-LAFNKTDVA 244 (426)
Q Consensus 213 ~~~~~~~~l~~~~~l~~~~~P~I-lVlNKiDl~ 244 (426)
. ........+...+.++. +|+||++-.
T Consensus 155 ~-----~~~~~~~~l~~~~~~i~GvIlN~~~~~ 182 (228)
T 3of5_A 155 N-----HTLLTINELNRHNIKLAGWIANCNDSN 182 (228)
T ss_dssp H-----HHHHHHHHHHHTTCCEEEEEEEECCTT
T ss_pred H-----HHHHHHHHHHhCCCcEEEEEEECcCCc
Confidence 1 11223344556677764 789999754
No 392
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.87 E-value=0.0069 Score=66.76 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=35.0
Q ss_pred HHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCC---CEEEEcCCC
Q 014354 126 YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHL---DYVLVDTPG 175 (426)
Q Consensus 126 ~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~---~~~liDTPG 175 (426)
..+++..+|++... +-.....||+|++|++.+|+++...+ .++|+|.|-
T Consensus 785 ~~~~L~~vGL~~~~-lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPT 836 (916)
T 3pih_A 785 TLQVLHDVGLGYVK-LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPT 836 (916)
T ss_dssp HHHHHHHTTGGGSB-TTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTT
T ss_pred HHHHHHHcCCchhh-ccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCC
Confidence 44567778875321 11122358999999999999997654 799999993
No 393
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.87 E-value=0.00085 Score=61.76 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=25.1
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCH 92 (426)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~ 92 (426)
...++.+|+|.|+.|||||||++.|.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457789999999999999999999987
No 394
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.85 E-value=0.0063 Score=61.80 Aligned_cols=41 Identities=12% Similarity=0.209 Sum_probs=32.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d 106 (426)
-.++-.++|.|+||+|||||+-.++......+..+.++...
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 45667899999999999999999887765456666666544
No 395
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.85 E-value=0.00071 Score=66.91 Aligned_cols=38 Identities=29% Similarity=0.338 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEec
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN 104 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~ 104 (426)
.++..++|+|++|||||||++.|++...+..+.+.+-+
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~ 210 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIED 210 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEES
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECC
Confidence 45668999999999999999999999877777776653
No 396
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.82 E-value=0.0016 Score=64.18 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d 106 (426)
+++.++.|+|+||+|||||+.+++......++.+..+...
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 4567999999999999999999998876666666555443
No 397
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.80 E-value=0.00066 Score=60.87 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=23.7
Q ss_pred CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
..+.+....++.+|+|+|++||||||+.+.|.+..
T Consensus 15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34445555567799999999999999999998764
No 398
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.80 E-value=0.0021 Score=70.26 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=37.1
Q ss_pred HHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcC---CCEEEEcCC
Q 014354 126 YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADH---LDYVLVDTP 174 (426)
Q Consensus 126 ~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~---~~~~liDTP 174 (426)
+.++++.+++.... .-.....||+|++|++.++.++..+ ++++|+|.|
T Consensus 710 ~~~~L~~~gL~~~~-l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEP 760 (842)
T 2vf7_A 710 ALDTLREVGLGYLR-LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEP 760 (842)
T ss_dssp HHHHHHHTTCTTSB-TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECT
T ss_pred HHHHHHHcCCCccc-ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECC
Confidence 45678888887631 1122345999999999999999885 699999999
No 399
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.80 E-value=0.00057 Score=60.56 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVC 91 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~ 91 (426)
.+++|+|++|||||||++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999986
No 400
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.79 E-value=0.00068 Score=62.93 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVC 91 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~ 91 (426)
++.+|+|+|++|||||||++.|..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999993
No 401
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.78 E-value=0.0006 Score=59.30 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
.+|+|+|++|||||||++.|.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999998864
No 402
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.78 E-value=0.0042 Score=68.43 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=36.4
Q ss_pred HHHHHHHcCCCC-CCCcccccccccccHHHHHHHHHHHhcC---CCEEEEcCCC
Q 014354 126 YKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADH---LDYVLVDTPG 175 (426)
Q Consensus 126 ~~~~~~~~~l~~-ng~i~~~~~~ls~~~~~~~~~~~~~~~~---~~~~liDTPG 175 (426)
..++++.+++.. ..+ .....||+|++|++.++.++..+ ++++|+|.|-
T Consensus 825 ~~~~L~~~gL~~~~l~--~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT 876 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLG--QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT 876 (972)
T ss_dssp HHHHHHHTTCSSSBTT--CCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTT
T ss_pred HHHHHHHcCCCccccc--CchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence 346788888875 222 22235899999999999999875 4999999993
No 403
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.77 E-value=0.00071 Score=65.22 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI 98 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~ 98 (426)
.+.+++|+|++|||||||+|.|+ ...+..+
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G 193 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEELRTQ 193 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCCCCS
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhCccc
Confidence 45689999999999999999999 6554433
No 404
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=96.76 E-value=0.011 Score=58.47 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=34.4
Q ss_pred CCCCeEEEEEc-CCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354 66 KRKPVIIIVVG-MAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (426)
Q Consensus 66 ~~~~~~v~iiG-~~gaGKSTLln~L~~~~~~~~~~~~i~~~d 106 (426)
.+++.+|+|+| ..|+||||+.-.|.......+.++.+++.|
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 45667788875 899999999999988876678899999988
No 405
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.74 E-value=0.0019 Score=70.05 Aligned_cols=87 Identities=20% Similarity=0.221 Sum_probs=49.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccc-cCCceEEEeccCccc-cccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQ-SRNIRGYVMNLDPAV-MTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~-~~~~~~~i~~~d~~v-~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
+.+++|+|++|+||||||+.+.+... +..+.. + |+. ..+++...+ +..++...+ +..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~--v---pa~~~~i~~v~~i-----------~~~~~~~d~--l~~--- 634 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSF--V---PAEEAHLPLFDGI-----------YTRIGASDD--LAG--- 634 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC--B---SSSEEEECCCSEE-----------EEECCC-----------
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCce--e---ehhccceeeHHHh-----------hccCCHHHH--HHh---
Confidence 56899999999999999999998653 222110 0 110 000000000 000111111 111
Q ss_pred cccccHHHHHHHHHHH--hcCCCEEEEcCCCc
Q 014354 147 LFTTKFDEVISLIERR--ADHLDYVLVDTPGQ 176 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~--~~~~~~~liDTPGi 176 (426)
.+++++.++..++..+ ..++.++|+|.||-
T Consensus 635 g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr 666 (765)
T 1ewq_A 635 GKSTFMVEMEEVALILKEATENSLVLLDEVGR 666 (765)
T ss_dssp CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred cccHHHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 1356677788887777 77899999999974
No 406
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.71 E-value=0.00092 Score=59.20 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=24.3
Q ss_pred CcCCCCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCH 92 (426)
Q Consensus 64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~ 92 (426)
+...++.+|+|+|++||||||+.+.|...
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 33446678999999999999999999876
No 407
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.70 E-value=0.0007 Score=60.74 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQ 94 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~ 94 (426)
.+++|+|++|||||||++.|++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999999875
No 408
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.69 E-value=0.0058 Score=67.55 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=35.4
Q ss_pred HHHHHHcCCCC-CCCcccccccccccHHHHHHHHHHHhcC---CCEEEEcCCC
Q 014354 127 KEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADH---LDYVLVDTPG 175 (426)
Q Consensus 127 ~~~~~~~~l~~-ng~i~~~~~~ls~~~~~~~~~~~~~~~~---~~~~liDTPG 175 (426)
.++++.+++.. ..+ .....||+|+++++.++.++..+ ++++|+|.|-
T Consensus 844 ~~~L~~lgL~~~~l~--~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT 894 (993)
T 2ygr_A 844 LRTLVDVGLGYVRLG--QPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPT 894 (993)
T ss_dssp HHHHHHTTGGGSBTT--CCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTT
T ss_pred HHHHHHcCCCccccc--CccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence 45678888764 112 22335899999999999999875 4999999993
No 409
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.68 E-value=0.002 Score=71.97 Aligned_cols=91 Identities=22% Similarity=0.246 Sum_probs=49.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceE-EEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG-YVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~-~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ 147 (426)
+.+++|+|++|+||||||+.+ |........+ +|..... .+.+.+.+ +..+|...+ +....+.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq~~~---------~l~v~d~I-----~~rig~~d~--~~~~~st 851 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPAEVC---------RLTPIDRV-----FTRLGASDR--IMSGEST 851 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEESSEE---------EECCCSBE-----EEECC-----------CH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEeccCcC---------CCCHHHHH-----HHHcCCHHH--Hhhchhh
Confidence 579999999999999999999 6543211111 1111100 00001110 001111111 1112234
Q ss_pred ccccHHHHHHHHHHHhcCCCEEEEcCCCcc
Q 014354 148 FTTKFDEVISLIERRADHLDYVLVDTPGQI 177 (426)
Q Consensus 148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~ 177 (426)
|+.++.+ +.++.+....+.++|+|.||-.
T Consensus 852 f~~em~~-~a~al~la~~~sLlLLDEp~~G 880 (1022)
T 2o8b_B 852 FFVELSE-TASILMHATAHSLVLVDELGRG 880 (1022)
T ss_dssp HHHHHHH-HHHHHHHCCTTCEEEEECTTTT
T ss_pred hHHHHHH-HHHHHHhCCCCcEEEEECCCCC
Confidence 6667776 5667777889999999999854
No 410
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.68 E-value=0.00098 Score=65.61 Aligned_cols=40 Identities=15% Similarity=0.031 Sum_probs=31.8
Q ss_pred CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEe
Q 014354 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM 103 (426)
Q Consensus 64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~ 103 (426)
....++.+++|+|++|||||||++.|++...+..+.+.++
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~ 105 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALI 105 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEE
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 3455788999999999999999999999976654444443
No 411
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.67 E-value=0.00051 Score=60.66 Aligned_cols=34 Identities=35% Similarity=0.569 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEe
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM 103 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~ 103 (426)
.+++|+|++|||||||++.|++...+.+.+...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I 36 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVV 36 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEE
Confidence 4799999999999999999999987764443333
No 412
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.63 E-value=0.012 Score=58.10 Aligned_cols=92 Identities=14% Similarity=0.243 Sum_probs=53.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
+++.++.|.|+||+|||||..+++......+..+.++........ . ....+++....-.+..
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~------------~----~a~~~g~~~~~l~i~~-- 122 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP------------I----YARKLGVDIDNLLCSQ-- 122 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH------------H----HHHHTTCCGGGCEEEC--
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccH------------H----HHHHcCCChhheeeeC--
Confidence 356789999999999999999998776555666666655422210 0 1223443321100100
Q ss_pred cccccHHHHHHHHHHH--hcCCCEEEEcCCCccc
Q 014354 147 LFTTKFDEVISLIERR--ADHLDYVLVDTPGQIE 178 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~--~~~~~~~liDTPGi~e 178 (426)
.....+...++..+ ...++++|||+++...
T Consensus 123 --~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 123 --PDTGEQALEICDALARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp --CSSHHHHHHHHHHHHHHTCCSEEEEECGGGCC
T ss_pred --CCCHHHHHHHHHHHHhccCCCEEEEcCHHHhc
Confidence 11233444444322 4578999999998765
No 413
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.62 E-value=0.00089 Score=60.26 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
++..|+|+|++|||||||.+.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45679999999999999999998765
No 414
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.61 E-value=0.014 Score=57.76 Aligned_cols=92 Identities=15% Similarity=0.252 Sum_probs=55.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~ 146 (426)
+++..+.|.|+||+|||||...++......++.+.++..+...... .+..+++....-.+..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~----------------~a~~~g~d~~~l~i~~-- 133 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV----------------YARALGVNTDELLVSQ-- 133 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH----------------HHHHTTCCGGGCEEEC--
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH----------------HHHHcCCCHHHceeec--
Confidence 3566899999999999999999887765556677776665432110 1233443321111110
Q ss_pred cccccHHHHHHHHHHH--hcCCCEEEEcCCCccc
Q 014354 147 LFTTKFDEVISLIERR--ADHLDYVLVDTPGQIE 178 (426)
Q Consensus 147 ~ls~~~~~~~~~~~~~--~~~~~~~liDTPGi~e 178 (426)
....++...++..+ ...++++|||..+...
T Consensus 134 --~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 134 --PDNGEQALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp --CSSHHHHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred --CCcHHHHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 12334444444433 2568999999998764
No 415
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.60 E-value=0.021 Score=57.98 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=31.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHccccc-CCceEEEeccC
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-RNIRGYVMNLD 106 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~-~~~~~~i~~~d 106 (426)
..++-.++|.|+||+|||||+..|+..... .+..+.++...
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 456779999999999999999999987654 34466665443
No 416
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.60 E-value=0.00092 Score=58.75 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~ 94 (426)
+..++|+|+||+|||||+++|.+...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56799999999999999999998864
No 417
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.59 E-value=0.0015 Score=67.74 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEec
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN 104 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~ 104 (426)
++..++|+|++|||||||+++|++...+..+.+.+-+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied 295 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED 295 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence 4556999999999999999999998866666665543
No 418
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.55 E-value=0.00063 Score=69.77 Aligned_cols=44 Identities=18% Similarity=0.076 Sum_probs=34.5
Q ss_pred CCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEecc
Q 014354 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL 105 (426)
Q Consensus 61 ~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~ 105 (426)
..+....+ .+++|+|++||||||||+.|.+...+..+.+.+.+.
T Consensus 22 ~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 65 (483)
T 3euj_A 22 ARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNT 65 (483)
T ss_dssp EEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCT
T ss_pred ceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCE
Confidence 34444556 899999999999999999999998777666555443
No 419
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.55 E-value=0.0015 Score=66.23 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=33.6
Q ss_pred CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEec
Q 014354 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN 104 (426)
Q Consensus 64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~ 104 (426)
....++.+++|+|++|||||||++.|++...+..+.+.+.+
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G 192 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIG 192 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEec
Confidence 44567889999999999999999999999877656555544
No 420
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.51 E-value=0.0018 Score=58.17 Aligned_cols=28 Identities=39% Similarity=0.483 Sum_probs=24.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
..++.+|+|+|++|||||||++.|.+..
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4456799999999999999999999864
No 421
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.50 E-value=0.0013 Score=59.00 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
.+.+|+|+|++|||||||.+.|.+..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998764
No 422
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.50 E-value=0.0019 Score=57.66 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=24.6
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
...++.+|+|+|++||||||+.+.|....
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34566789999999999999999998653
No 423
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=96.49 E-value=0.041 Score=51.09 Aligned_cols=164 Identities=12% Similarity=0.079 Sum_probs=85.5
Q ss_pred CCCCeEEEEEcC-CCCCHHHHHHHHHcccccCCceEEEeccCcccccccc--ccccchhhhHHHHHHHHHc--CCCCCCC
Q 014354 66 KRKPVIIIVVGM-AGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPF--AANIDIRDTIRYKEVMKQF--NLGPNGG 140 (426)
Q Consensus 66 ~~~~~~v~iiG~-~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~--~t~i~~r~~~~~~~~~~~~--~l~~ng~ 140 (426)
.+....+.|.|. +|+|||++.-.|+......+.++.... |..+.... .... +...+-+....+ ++.+.
T Consensus 18 ~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK--Pv~~g~~~~~~~~~---D~~~~~~~~~~~~~g~~~~-- 90 (242)
T 3qxc_A 18 YFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK--PIETGVNDAINHSS---DAHLFLQDNRLLDRSLTLK-- 90 (242)
T ss_dssp -CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC--CEECSCCTTTCCCS---HHHHHHHHHHTTCTTCCHH--
T ss_pred hhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe--eeecCCcccCCCCc---hHHHHHHHHHHHhCCCChH--
Confidence 445677888887 999999999999988877777776653 11110000 0011 111000000111 11110
Q ss_pred ccccccc---c-------------cccHHHHHHHHHHHhcCCCEEEEcCCCc-ccccchhchHHHHHHHHHhcCCcEEEE
Q 014354 141 ILTSLNL---F-------------TTKFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAIITEAFASTFPTVVTY 203 (426)
Q Consensus 141 i~~~~~~---l-------------s~~~~~~~~~~~~~~~~~~~~liDTPGi-~e~~~~~~~~~~l~~~~~~~~~d~vl~ 203 (426)
.++...+ . .-..+.+......+...++++|||.||- ..+.........+.+.+ ..-+|+
T Consensus 91 ~~~p~~~~~p~sp~~aa~~~g~~~~i~~~~I~~~~~~l~~~~D~vlIEGagGl~~pl~~~~~~adlA~~l----~~pVIL 166 (242)
T 3qxc_A 91 DISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKL----KAKMLL 166 (242)
T ss_dssp HHCCEECSSSSCHHHHHHHHCTTCCCCHHHHHHHHHHGGGTCSEEEEECCSCTTCBSSSSCBHHHHHHHH----TCEEEE
T ss_pred HeeeEEECCCCChHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCEEEEECCCCccccccccchHHHHHHHc----CCCEEE
Confidence 0000000 0 1134555666666678899999999964 33322222223333322 346888
Q ss_pred EEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354 204 VVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (426)
Q Consensus 204 VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~ 245 (426)
|+++..+.-.. .+.....+.+.+.+.=+|+|+++-..
T Consensus 167 V~~~~lg~i~~-----~~lt~~~l~~~g~~~GvIlN~v~~~~ 203 (242)
T 3qxc_A 167 ISHDNLGLIND-----CLLNDFLLKSHQLDYKIAINLKGNNT 203 (242)
T ss_dssp EECCSTTHHHH-----HHHHHHHHHTSSSCEEEEECCCTTCC
T ss_pred EEcCCCcHHHH-----HHHHHHHHHhCCCCEEEEEeCCCCcc
Confidence 89987652111 12233445566777668999998554
No 424
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.47 E-value=0.01 Score=64.66 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
.++.+++|+|++|+||||||+.|.+..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 456799999999999999999998864
No 425
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.46 E-value=0.0025 Score=58.73 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=27.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceE
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG 100 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~ 100 (426)
.++..|+|.|++||||||+++.|...... +..+
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~ 56 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV 56 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence 36789999999999999999999998765 4443
No 426
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.45 E-value=0.0015 Score=56.29 Aligned_cols=20 Identities=45% Similarity=0.853 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 014354 70 VIIIVVGMAGSGKTTFMHRL 89 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L 89 (426)
.+|+|+|+|||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 427
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.44 E-value=0.026 Score=55.10 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=34.5
Q ss_pred cChhhhHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccC
Q 014354 33 ANDKEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR 96 (426)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~ 96 (426)
+...+.+.+...+....... ....+.++|.|++|+|||||++.+.+.....
T Consensus 21 gr~~~~~~l~~~l~~~~~~~-------------~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 21 HREQQLQQLDILLGNWLRNP-------------GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TCHHHHHHHHHHHHHHHHST-------------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHHHHHcCC-------------CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 44556666666665543200 1122379999999999999999999876554
No 428
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.44 E-value=0.0017 Score=59.07 Aligned_cols=25 Identities=24% Similarity=0.378 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
..+|+|+|++||||||+.+.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998764
No 429
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.42 E-value=0.0017 Score=56.44 Aligned_cols=22 Identities=36% Similarity=0.762 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVC 91 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~ 91 (426)
.+|+|+|+|||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 430
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.42 E-value=0.0019 Score=56.66 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~ 95 (426)
++.+|+|+|++||||||+.+.|.+....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5678999999999999999999886533
No 431
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.41 E-value=0.0018 Score=58.03 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVC 91 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~ 91 (426)
.+|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 432
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.40 E-value=0.0019 Score=57.02 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
++..|+|+|+|||||||+.+.|....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998754
No 433
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.39 E-value=0.0016 Score=56.24 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
.+|+|+|++||||||+.+.|....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998764
No 434
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.38 E-value=0.0019 Score=56.33 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
+..|+|+|++||||||+.+.|....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999998764
No 435
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=96.37 E-value=0.057 Score=50.41 Aligned_cols=157 Identities=17% Similarity=0.130 Sum_probs=80.3
Q ss_pred CCeEEEEEcC-CCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCC-ccccc
Q 014354 68 KPVIIIVVGM-AGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGG-ILTSL 145 (426)
Q Consensus 68 ~~~~v~iiG~-~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~-i~~~~ 145 (426)
....+.|.|. +|+|||++.-.|+......+.++.... |..+.. .... .+.. .+....++.+.-. ++...
T Consensus 25 ~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK--Pv~~g~-~~~~---~D~~---~~~~~~g~~~~~~~~~~~~ 95 (251)
T 3fgn_A 25 HMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK--PVQTGT-ARGD---DDLA---EVGRLAGVTQLAGLARYPQ 95 (251)
T ss_dssp SCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE--EEECCG-GGTC---CHHH---HHHHHHCCCEEEEEEECSS
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe--eeecCC-CCCC---HHHH---HHHHHcCCCCCCCCeeECC
Confidence 4467888887 699999999999988877777765542 100000 0000 1111 1112233221000 00000
Q ss_pred ----------ccc-cccHHHHHHHHHHHhcCCCEEEEcCCCcc-cccchh-chHHHHHHHHHhcCCcEEEEEEeCCCCCC
Q 014354 146 ----------NLF-TTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSAN 212 (426)
Q Consensus 146 ----------~~l-s~~~~~~~~~~~~~~~~~~~~liDTPGi~-e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~~~~ 212 (426)
.-. .-.++.+......+..+++++|||.||-. .+.... .....+.+ ....-+|+|+++..+.-
T Consensus 96 p~sP~~aa~~~~~~~~~~~~i~~~~~~l~~~~D~vlIEGagGl~~pl~~~~~~~adla~----~l~~pVILV~~~~~g~i 171 (251)
T 3fgn_A 96 PMAPAAAAEHAGMALPARDQIVRLIADLDRPGRLTLVEGAGGLLVELAEPGVTLRDVAV----DVAAAALVVVTADLGTL 171 (251)
T ss_dssp SSCHHHHHHHTTCCCCCHHHHHHHHHTTCCTTCEEEEECSSSTTCEEETTTEEHHHHHH----HTTCEEEEEECSSTTHH
T ss_pred CCChHHHHHHcCCCCCCHHHHHHHHHHHHhcCCEEEEECCCCCcCCcCcccchHHHHHH----HcCCCEEEEEcCCCccH
Confidence 000 11344555555556678999999999643 221111 12222222 33457889999875421
Q ss_pred chhhhhhHHHHHHHHhhccCCeE-EEEecCC
Q 014354 213 PMTFMSNMLYACSILYKTRLPLV-LAFNKTD 242 (426)
Q Consensus 213 ~~~~~~~~l~~~~~l~~~~~P~I-lVlNKiD 242 (426)
... +.....+...+.++. +|+||+.
T Consensus 172 ~~~-----~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 172 NHT-----KLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp HHH-----HHHHHHHHHTTCCEEEEEEEEEC
T ss_pred HHH-----HHHHHHHHhCCCCEEEEEEECCC
Confidence 111 223334455677765 6899984
No 436
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.33 E-value=0.0019 Score=56.80 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
++.+|+|+|+|||||||+.+.|....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998653
No 437
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.31 E-value=0.0022 Score=59.97 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCH 92 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~ 92 (426)
.++.+|+|+|++|||||||++.|...
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45679999999999999999999943
No 438
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.29 E-value=0.0017 Score=64.11 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=28.3
Q ss_pred CCCcCCC--CeEEEEEcCCCCCHHHHHHHHHcccccC
Q 014354 62 SINFKRK--PVIIIVVGMAGSGKTTFMHRLVCHTQSR 96 (426)
Q Consensus 62 ~~~~~~~--~~~v~iiG~~gaGKSTLln~L~~~~~~~ 96 (426)
++....+ +.+++|+|++|||||||++.|.+...+.
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3344445 7799999999999999999999987553
No 439
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.29 E-value=0.0029 Score=55.60 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHccccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQS 95 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~ 95 (426)
.+|+|+|++||||||+.+.|......
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46999999999999999999887543
No 440
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.28 E-value=0.0016 Score=60.51 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHHHccc
Q 014354 72 IIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 72 v~iiG~~gaGKSTLln~L~~~~ 93 (426)
++|+|+||+|||||+++|.+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999875
No 441
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.28 E-value=0.0022 Score=56.28 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
+.+|+|+|++||||||+.+.|....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998765
No 442
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.26 E-value=0.002 Score=57.63 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVC 91 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~ 91 (426)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999998
No 443
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.26 E-value=0.0029 Score=56.81 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~ 94 (426)
.++..|+|+|++||||||+.+.|.....
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999987653
No 444
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.22 E-value=0.0028 Score=56.58 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=23.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
..++.+|+|+|+|||||||+.+.|....
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455689999999999999999998754
No 445
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.21 E-value=0.0029 Score=59.36 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
++..|+|+|+|||||||+.+.|....
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998763
No 446
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.20 E-value=0.0026 Score=56.81 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~ 95 (426)
++..|+|.|++||||||+.+.|......
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 3568999999999999999999886543
No 447
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.20 E-value=0.0028 Score=56.42 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
++..|+|+|++||||||+.+.|....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998865
No 448
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.18 E-value=0.0027 Score=57.36 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~ 94 (426)
++.+|+|+|++||||||+.+.|.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 567899999999999999999988764
No 449
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.15 E-value=0.0031 Score=60.44 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHccccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~ 95 (426)
.++.+|+|+|++|||||||++.|.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 36789999999999999999999887654
No 450
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.15 E-value=0.0024 Score=57.17 Aligned_cols=22 Identities=32% Similarity=0.721 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHHccc
Q 014354 72 IIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 72 v~iiG~~gaGKSTLln~L~~~~ 93 (426)
|+|+||+|||||||+++|+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998764
No 451
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.13 E-value=0.014 Score=57.02 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=24.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCH 92 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~ 92 (426)
.+++.++.|.|+||+|||||+..|+..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999876
No 452
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.12 E-value=0.0022 Score=60.62 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHHHccc
Q 014354 72 IIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 72 v~iiG~~gaGKSTLln~L~~~~ 93 (426)
++|+|+||+|||||+++|.+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 8999999999999999999875
No 453
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.12 E-value=0.003 Score=55.82 Aligned_cols=26 Identities=46% Similarity=0.544 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
++.+|+|+|++||||||+.+.|....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
No 454
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.12 E-value=0.0031 Score=55.21 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
++.+|+|+|++||||||+.+.|....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998653
No 455
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.12 E-value=0.0031 Score=55.46 Aligned_cols=26 Identities=38% Similarity=0.636 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
++.+|+|+|.|||||||+.+.|....
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998653
No 456
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.11 E-value=0.0033 Score=57.59 Aligned_cols=40 Identities=20% Similarity=0.399 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d 106 (426)
+++..++|+|+||+|||||+..++......+..+.++..+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3567899999999999999888876654455555555443
No 457
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.10 E-value=0.0033 Score=56.33 Aligned_cols=27 Identities=33% Similarity=0.336 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~ 94 (426)
++.+|+|+|.+||||||+.+.|.....
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999987643
No 458
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.10 E-value=0.0037 Score=57.31 Aligned_cols=28 Identities=39% Similarity=0.463 Sum_probs=24.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
.+++.+|+|+|+|||||+|....|....
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566789999999999999999998765
No 459
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.09 E-value=0.0014 Score=58.99 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCceEE
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGY 101 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~ 101 (426)
+|+|+|++||||||+++.|.......+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~ 32 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA 32 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 6899999999999999999987654444443
No 460
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.08 E-value=0.0031 Score=57.23 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
++.+|+|+|+|||||||+.+.|....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998764
No 461
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.07 E-value=0.022 Score=57.03 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHH
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLV 90 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~ 90 (426)
..++.+++|+|+||+|||||+..|+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 3456799999999999999999765
No 462
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.06 E-value=0.0033 Score=55.13 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
+..|+|+|++||||||+.+.|....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998754
No 463
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.05 E-value=0.0032 Score=59.64 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcccc
Q 014354 72 IIVVGMAGSGKTTFMHRLVCHTQ 94 (426)
Q Consensus 72 v~iiG~~gaGKSTLln~L~~~~~ 94 (426)
++|+|+||+|||||+++|.+...
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcC
Confidence 99999999999999999998753
No 464
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=96.05 E-value=0.0057 Score=60.28 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=32.2
Q ss_pred EEEEE-cCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354 71 IIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (426)
Q Consensus 71 ~v~ii-G~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~ 108 (426)
+|+|+ +..|+||||+.-.|.......+.++.+++.||.
T Consensus 3 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q 41 (361)
T 3pg5_A 3 TISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQ 41 (361)
T ss_dssp EEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCC
Confidence 45555 679999999999998887778899999999975
No 465
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.04 E-value=0.0042 Score=54.49 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
.+.+|+|+|++||||||+.+.|....
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998753
No 466
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.02 E-value=0.0031 Score=55.25 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQ 94 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~ 94 (426)
+++|+|++|||||||+.+|.....
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 789999999999999999987653
No 467
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.02 E-value=0.0039 Score=55.37 Aligned_cols=26 Identities=38% Similarity=0.571 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCH 92 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~ 92 (426)
.++.+|+|+|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999999875
No 468
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.01 E-value=0.0034 Score=55.69 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
+|+|+|++||||||+.+.|....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998864
No 469
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.00 E-value=0.055 Score=56.71 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=34.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~ 108 (426)
..++++.|.+|+||||+.-.|.......+.++.++..||.
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~ 366 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA 366 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 3567789999999999988888887777889999999875
No 470
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.00 E-value=0.004 Score=59.44 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
.++..|+|+|+||||||||.++|....
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998753
No 471
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.99 E-value=0.0047 Score=63.11 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
....+|+++|.|||||||+.++|....
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998765
No 472
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.97 E-value=0.0026 Score=55.58 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=18.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
++..|+|+|.|||||||+.+.|....
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999997653
No 473
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.95 E-value=0.018 Score=55.68 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
.+++.++.|.|+||+|||||+..++...
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 3456789999999999999999998763
No 474
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.93 E-value=0.0036 Score=57.17 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
++.+|+|+|++||||||+.+.|....
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998754
No 475
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.87 E-value=0.0047 Score=57.32 Aligned_cols=26 Identities=31% Similarity=0.230 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
++.+|+|+|+|||||||+.++|....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998654
No 476
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.85 E-value=0.0053 Score=55.53 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVC 91 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~ 91 (426)
++.+|+|+|.+||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999976
No 477
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.85 E-value=0.0051 Score=52.72 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
+...+|+|++|+|||||+.+|.-..
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999997543
No 478
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.82 E-value=0.0038 Score=56.74 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
++..|+|+|++||||||+.+.|....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998764
No 479
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.81 E-value=0.0039 Score=58.18 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=24.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
..++..|+|+|+|||||||+.+.|....
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456789999999999999999998764
No 480
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.81 E-value=0.0098 Score=60.29 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVC 91 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~ 91 (426)
.+..+|+|+|+.++|||+|+|.|++
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~ 89 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHHH
Confidence 3567899999999999999997764
No 481
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.80 E-value=0.0051 Score=63.79 Aligned_cols=42 Identities=19% Similarity=0.084 Sum_probs=32.4
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHH--HHcccccCCceEEEeccC
Q 014354 65 FKRKPVIIIVVGMAGSGKTTFMHR--LVCHTQSRNIRGYVMNLD 106 (426)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLln~--L~~~~~~~~~~~~i~~~d 106 (426)
..+++.+++|+|+||||||||++. +.+...+..+.+++.+.+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 455778999999999999999999 557665456666665544
No 482
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.79 E-value=0.0037 Score=65.23 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcccccCCc-eEEEec
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI-RGYVMN 104 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~-~~~i~~ 104 (426)
.++.+|+|+|++|||||||++.|.+...+.++ .+.+++
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lD 405 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLD 405 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEES
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEEC
Confidence 46789999999999999999999998765543 444333
No 483
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.79 E-value=0.12 Score=52.84 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=30.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcccccC-CceEEEecc
Q 014354 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNL 105 (426)
Q Consensus 66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~-~~~~~i~~~ 105 (426)
..++..++|.|+||+|||||+-.++...... +..+.++..
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 4566789999999999999999988776544 555655543
No 484
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.77 E-value=0.0048 Score=54.57 Aligned_cols=25 Identities=40% Similarity=0.487 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
+.+|+|+|++||||||+.+.|....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 485
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.75 E-value=0.02 Score=55.51 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccC--CceEEEec
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSR--NIRGYVMN 104 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~--~~~~~i~~ 104 (426)
++ ++.|.|+||+|||||+-+++...... ++.+..+.
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 44 69999999999999987777654332 44444443
No 486
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.72 E-value=0.0074 Score=54.66 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEE
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV 102 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i 102 (426)
+..++|.|+||+|||||++++.......+..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~ 85 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFY 85 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4578999999999999999999876544444433
No 487
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.72 E-value=0.023 Score=53.75 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
++..++|.|+||+|||||++++.+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998865
No 488
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.69 E-value=0.02 Score=53.69 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
.+..++|.|+||+|||+|++++.+..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34569999999999999999998764
No 489
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.68 E-value=0.0063 Score=60.48 Aligned_cols=29 Identities=28% Similarity=0.163 Sum_probs=25.0
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
..+++..++|+|+||+|||||++.|.+..
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34566789999999999999999999864
No 490
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.67 E-value=0.00082 Score=62.14 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceEEE
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV 102 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i 102 (426)
.+++|+|++|||||||+++|.+...+..+.+.+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~ 60 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHF 60 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEE
Confidence 357899999999999999999998776554433
No 491
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.67 E-value=0.0054 Score=55.27 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
+|+|+|+|||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997654
No 492
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.64 E-value=0.0087 Score=53.25 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcccccCCceE
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG 100 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~ 100 (426)
..+.|.|++|+|||+|+.+|.......+..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~ 85 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS 85 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 5689999999999999999998765544433
No 493
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.63 E-value=0.0053 Score=59.71 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHccc
Q 014354 70 VIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 70 ~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
..++|+|+||+|||||++.|.+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 458999999999999999999875
No 494
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.63 E-value=0.0075 Score=53.18 Aligned_cols=28 Identities=32% Similarity=0.428 Sum_probs=23.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcccccCCc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNI 98 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~ 98 (426)
.|+|.|.+||||||+.+.|.......+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~ 29 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGK 29 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 6899999999999999999887543333
No 495
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.62 E-value=0.0054 Score=57.43 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 69 PVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 69 ~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
+.+|+|+|++||||||+.+.|.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5679999999999999999998754
No 496
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.61 E-value=0.0067 Score=55.67 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 67 ~~~~~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
.++..|+|+|++||||||+.+.|....
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 355689999999999999999998764
No 497
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.61 E-value=0.0059 Score=55.07 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
+|+|+|+|||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997654
No 498
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.55 E-value=0.0056 Score=53.32 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
+|+|+|+|||||||+.+.|....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998764
No 499
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.54 E-value=0.0045 Score=59.23 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (426)
Q Consensus 68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d 106 (426)
++.+|+|.|++||||||+.+.|.......+..+.++..|
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D 42 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD 42 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecc
Confidence 456899999999999999999987543223334455444
No 500
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.53 E-value=0.0071 Score=53.12 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHccc
Q 014354 71 IIIVVGMAGSGKTTFMHRLVCHT 93 (426)
Q Consensus 71 ~v~iiG~~gaGKSTLln~L~~~~ 93 (426)
+|+|+|.+||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
Done!