Query 014355
Match_columns 426
No_of_seqs 193 out of 1921
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 04:19:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02286 arginine-tRNA ligase 100.0 7.7E-96 2E-100 777.3 45.3 386 34-421 22-408 (576)
2 COG0018 ArgS Arginyl-tRNA synt 100.0 6.1E-95 1.3E-99 762.6 42.9 398 10-420 2-412 (577)
3 PRK12451 arginyl-tRNA syntheta 100.0 1.3E-91 2.9E-96 744.1 44.7 396 10-422 2-402 (562)
4 KOG4426 Arginyl-tRNA synthetas 100.0 2.7E-88 5.9E-93 664.0 37.6 414 2-422 64-478 (656)
5 TIGR00456 argS arginyl-tRNA sy 100.0 2.3E-85 5E-90 698.2 45.6 392 12-421 2-402 (566)
6 PRK01611 argS arginyl-tRNA syn 100.0 1.9E-75 4.1E-80 615.3 40.8 342 8-420 2-351 (507)
7 PF00750 tRNA-synt_1d: tRNA sy 100.0 4E-74 8.7E-79 579.8 23.6 302 110-421 2-317 (354)
8 KOG1195 Arginyl-tRNA synthetas 100.0 1.1E-67 2.3E-72 528.9 28.0 363 34-419 25-395 (567)
9 cd00671 ArgRS_core catalytic c 100.0 3.8E-57 8.3E-62 426.1 24.2 209 129-397 1-212 (212)
10 COG0215 CysS Cysteinyl-tRNA sy 100.0 1.5E-28 3.2E-33 249.7 17.6 235 126-417 19-294 (464)
11 PLN02946 cysteine-tRNA ligase 100.0 1.7E-27 3.8E-32 249.8 18.8 230 126-413 77-345 (557)
12 PRK00260 cysS cysteinyl-tRNA s 100.0 2.4E-27 5.1E-32 247.4 18.3 234 126-417 20-292 (463)
13 PF01406 tRNA-synt_1e: tRNA sy 99.9 2.5E-27 5.4E-32 230.2 16.4 235 125-417 4-278 (300)
14 PRK14536 cysS cysteinyl-tRNA s 99.9 6.1E-27 1.3E-31 243.3 19.8 242 126-415 20-304 (490)
15 PRK14534 cysS cysteinyl-tRNA s 99.9 8.9E-27 1.9E-31 241.0 19.9 233 128-408 20-296 (481)
16 TIGR00435 cysS cysteinyl-tRNA 99.9 2.2E-26 4.7E-31 239.9 21.0 234 126-417 18-291 (465)
17 PRK12418 cysteinyl-tRNA synthe 99.9 5.7E-26 1.2E-30 229.8 20.3 227 125-408 5-278 (384)
18 PRK14535 cysS cysteinyl-tRNA s 99.9 4.9E-26 1.1E-30 240.6 20.1 236 126-417 245-534 (699)
19 TIGR03447 mycothiol_MshC cyste 99.9 1.1E-25 2.3E-30 229.0 19.2 225 127-408 34-305 (411)
20 PTZ00399 cysteinyl-tRNA-synthe 99.9 4.6E-25 1E-29 237.4 18.2 234 126-417 57-341 (651)
21 cd00668 Ile_Leu_Val_MetRS_core 99.9 9.6E-22 2.1E-26 195.7 22.1 241 129-416 1-298 (312)
22 KOG2007 Cysteinyl-tRNA synthet 99.9 6.4E-23 1.4E-27 206.6 13.5 240 125-417 51-331 (586)
23 cd00802 class_I_aaRS_core cata 99.9 8.3E-23 1.8E-27 180.7 12.2 143 132-396 1-143 (143)
24 cd00812 LeuRS_core catalytic c 99.8 4.1E-20 8.8E-25 184.2 16.7 228 129-416 1-300 (314)
25 cd00672 CysRS_core catalytic c 99.8 6.5E-20 1.4E-24 172.7 15.2 183 126-418 17-201 (213)
26 cd00818 IleRS_core catalytic c 99.8 3.6E-19 7.9E-24 179.1 20.8 243 129-416 2-324 (338)
27 cd00814 MetRS_core catalytic c 99.8 2.7E-19 5.8E-24 178.7 19.4 227 129-416 1-305 (319)
28 TIGR00464 gltX_bact glutamyl-t 99.8 3.9E-19 8.5E-24 185.5 19.0 94 308-416 172-266 (470)
29 cd00817 ValRS_core catalytic c 99.8 2.3E-18 4.9E-23 176.0 20.8 134 129-299 2-140 (382)
30 PRK01406 gltX glutamyl-tRNA sy 99.8 5.5E-19 1.2E-23 184.5 14.5 91 308-414 182-274 (476)
31 PRK11893 methionyl-tRNA synthe 99.8 5.7E-18 1.2E-22 179.3 21.2 120 128-300 1-123 (511)
32 cd00674 LysRS_core_class_I cat 99.8 8E-18 1.7E-22 169.0 21.1 242 128-417 19-301 (353)
33 PRK14895 gltX glutamyl-tRNA sy 99.8 8.7E-18 1.9E-22 174.9 18.3 86 308-408 171-256 (513)
34 TIGR00398 metG methionyl-tRNA 99.7 6.1E-17 1.3E-21 172.3 20.6 119 131-302 2-123 (530)
35 PRK12558 glutamyl-tRNA synthet 99.7 1.3E-17 2.9E-22 171.7 12.5 144 250-408 51-256 (445)
36 PF03485 Arg_tRNA_synt_N: Argi 99.7 6.7E-18 1.5E-22 136.4 8.1 82 14-101 2-85 (85)
37 PRK12267 methionyl-tRNA synthe 99.7 1.8E-16 4E-21 172.3 18.5 120 128-300 4-128 (648)
38 PRK00133 metG methionyl-tRNA s 99.7 2.2E-15 4.7E-20 164.5 20.7 122 128-302 2-126 (673)
39 PRK12268 methionyl-tRNA synthe 99.7 1E-15 2.3E-20 163.8 17.7 121 128-301 3-127 (556)
40 PLN02224 methionine-tRNA ligas 99.7 2.7E-15 5.9E-20 161.0 20.7 124 125-301 66-194 (616)
41 PRK12410 glutamylglutaminyl-tR 99.7 7.1E-16 1.5E-20 158.2 12.5 87 308-408 165-251 (433)
42 PRK13208 valS valyl-tRNA synth 99.6 2.2E-14 4.7E-19 159.6 24.0 130 127-296 37-171 (800)
43 COG0143 MetG Methionyl-tRNA sy 99.6 1.4E-14 3E-19 152.9 20.0 123 127-302 4-131 (558)
44 TIGR03838 queuosine_YadB gluta 99.6 3.9E-15 8.5E-20 144.7 14.5 138 253-405 52-242 (272)
45 PRK00750 lysK lysyl-tRNA synth 99.6 2.4E-14 5.1E-19 151.2 20.7 238 129-415 24-304 (510)
46 PF00749 tRNA-synt_1c: tRNA sy 99.6 2.7E-14 5.8E-19 142.2 18.6 101 308-422 174-277 (314)
47 cd00808 GluRS_core catalytic c 99.6 7.6E-15 1.6E-19 140.1 13.8 115 254-408 54-178 (239)
48 PLN02627 glutamyl-tRNA synthet 99.6 1.1E-14 2.3E-19 152.3 14.8 86 308-408 224-309 (535)
49 TIGR00422 valS valyl-tRNA synt 99.6 3.8E-13 8.2E-18 150.8 24.9 132 126-294 31-167 (861)
50 cd09287 GluRS_non_core catalyt 99.5 3.5E-14 7.7E-19 135.2 11.8 167 134-397 5-172 (240)
51 PF09334 tRNA-synt_1g: tRNA sy 99.5 1.4E-13 3.1E-18 141.0 15.9 114 130-296 1-117 (391)
52 PRK05710 glutamyl-Q tRNA(Asp) 99.5 1.3E-13 2.9E-18 135.5 14.6 136 254-404 58-248 (299)
53 TIGR00467 lysS_arch lysyl-tRNA 99.5 5.3E-13 1.1E-17 140.4 18.3 239 129-418 19-301 (515)
54 COG0008 GlnS Glutamyl- and glu 99.5 9.4E-14 2E-18 144.1 11.2 83 311-408 184-266 (472)
55 PRK04156 gltX glutamyl-tRNA sy 99.5 2.2E-13 4.7E-18 144.0 13.9 200 127-408 99-370 (567)
56 cd00418 GlxRS_core catalytic c 99.5 1.9E-13 4E-18 129.7 11.9 114 253-407 53-168 (230)
57 PLN02610 probable methionyl-tR 99.5 1.6E-12 3.4E-17 143.7 19.4 116 127-295 16-135 (801)
58 COG0525 ValS Valyl-tRNA synthe 99.3 4.3E-11 9.4E-16 130.6 14.6 130 128-294 33-167 (877)
59 PLN03233 putative glutamate-tR 99.3 4.4E-11 9.5E-16 125.2 13.3 86 296-396 147-251 (523)
60 KOG1149 Glutamyl-tRNA syntheta 99.2 1.4E-10 3.1E-15 116.2 12.5 97 297-408 201-297 (524)
61 PRK05729 valS valyl-tRNA synth 99.2 4.1E-10 8.9E-15 126.6 16.8 134 126-296 34-172 (874)
62 PTZ00402 glutamyl-tRNA synthet 99.2 2E-10 4.4E-15 121.6 13.4 75 308-397 208-294 (601)
63 cd00807 GlnRS_core catalytic c 99.2 2.3E-10 5E-15 108.9 12.6 117 253-397 53-170 (238)
64 PLN02943 aminoacyl-tRNA ligase 99.2 3E-10 6.6E-15 128.3 14.4 133 126-295 86-223 (958)
65 PLN02381 valyl-tRNA synthetase 99.2 6.6E-10 1.4E-14 126.5 16.8 133 126-295 126-264 (1066)
66 PTZ00419 valyl-tRNA synthetase 99.1 9.3E-10 2E-14 125.2 17.9 134 126-296 58-197 (995)
67 PRK14900 valS valyl-tRNA synth 99.1 6.3E-10 1.4E-14 126.7 16.3 133 126-294 46-183 (1052)
68 TIGR00396 leuS_bact leucyl-tRN 99.1 6.2E-10 1.3E-14 124.3 15.7 119 129-301 31-154 (842)
69 TIGR00463 gltX_arch glutamyl-t 99.1 3.7E-10 8E-15 119.5 12.8 187 128-397 92-335 (560)
70 PRK00390 leuS leucyl-tRNA synt 99.1 7.3E-10 1.6E-14 123.3 15.2 121 128-302 33-158 (805)
71 PF00133 tRNA-synt_1: tRNA syn 99.1 2.9E-10 6.2E-15 122.9 11.3 133 126-294 21-158 (601)
72 PRK05347 glutaminyl-tRNA synth 99.1 1.6E-09 3.4E-14 114.1 15.2 89 296-398 170-277 (554)
73 PLN02907 glutamate-tRNA ligase 99.1 7E-10 1.5E-14 121.3 12.8 182 128-396 212-453 (722)
74 TIGR00395 leuS_arch leucyl-tRN 99.1 1.1E-09 2.4E-14 123.7 13.8 140 126-294 23-167 (938)
75 PRK06039 ileS isoleucyl-tRNA s 99.1 2.5E-09 5.5E-14 121.3 16.0 133 126-294 39-176 (975)
76 PLN02563 aminoacyl-tRNA ligase 99.0 2.8E-09 6.1E-14 119.9 15.2 120 129-301 111-236 (963)
77 COG0495 LeuS Leucyl-tRNA synth 99.0 1.1E-09 2.3E-14 120.0 11.2 121 128-301 34-159 (814)
78 TIGR00392 ileS isoleucyl-tRNA 99.0 1.9E-09 4.2E-14 121.1 13.2 135 126-296 34-173 (861)
79 PRK05743 ileS isoleucyl-tRNA s 99.0 2.2E-09 4.8E-14 121.0 12.2 129 126-294 47-180 (912)
80 PLN02843 isoleucyl-tRNA synthe 99.0 4.6E-09 1E-13 118.9 13.1 137 126-301 30-171 (974)
81 PTZ00427 isoleucine-tRNA ligas 99.0 1.1E-08 2.3E-13 117.5 16.0 139 127-301 101-244 (1205)
82 TIGR00440 glnS glutaminyl-tRNA 99.0 9.2E-09 2E-13 108.0 14.1 77 318-408 182-273 (522)
83 PRK13804 ileS isoleucyl-tRNA s 98.9 6.2E-09 1.3E-13 117.9 12.4 137 127-300 53-194 (961)
84 PLN02882 aminoacyl-tRNA ligase 98.9 1.8E-08 4E-13 115.6 16.1 135 127-297 37-176 (1159)
85 PLN02859 glutamine-tRNA ligase 98.9 2.1E-08 4.6E-13 109.0 14.8 67 321-399 441-507 (788)
86 PRK14703 glutaminyl-tRNA synth 98.9 4.7E-08 1E-12 107.1 17.3 91 296-396 172-278 (771)
87 PF01921 tRNA-synt_1f: tRNA sy 98.9 3.7E-09 8E-14 106.0 7.3 239 127-419 22-310 (360)
88 KOG0436 Methionyl-tRNA synthet 98.8 1.4E-07 3E-12 94.7 16.9 112 139-303 50-166 (578)
89 COG1384 LysS Lysyl-tRNA synthe 98.8 8.3E-08 1.8E-12 99.2 13.9 49 128-177 19-67 (521)
90 PTZ00437 glutaminyl-tRNA synth 98.7 1.3E-07 2.8E-12 99.8 13.8 32 128-160 50-81 (574)
91 PLN02959 aminoacyl-tRNA ligase 98.7 1.1E-07 2.4E-12 108.8 13.8 172 127-300 44-245 (1084)
92 KOG0435 Leucyl-tRNA synthetase 98.7 2.6E-08 5.6E-13 104.7 5.9 116 127-296 57-177 (876)
93 KOG0432 Valyl-tRNA synthetase 98.7 1.7E-07 3.6E-12 101.3 12.0 138 126-299 73-215 (995)
94 PRK12300 leuS leucyl-tRNA synt 98.4 5.6E-07 1.2E-11 101.6 8.4 123 143-294 1-128 (897)
95 COG0060 IleS Isoleucyl-tRNA sy 97.9 4.5E-05 9.8E-10 85.1 9.3 133 128-297 49-186 (933)
96 TIGR00233 trpS tryptophanyl-tR 97.4 0.0014 3E-08 66.0 12.1 93 317-415 123-217 (328)
97 cd00806 TrpRS_core catalytic c 97.4 0.0029 6.3E-08 62.3 14.0 93 317-415 121-216 (280)
98 PRK08560 tyrosyl-tRNA syntheta 97.4 0.00054 1.2E-08 69.0 8.0 70 336-415 167-239 (329)
99 PRK05912 tyrosyl-tRNA syntheta 97.3 0.00047 1E-08 71.4 7.3 60 335-404 186-245 (408)
100 PF00133 tRNA-synt_1: tRNA syn 97.3 0.00047 1E-08 75.0 6.8 72 336-416 513-586 (601)
101 PRK12285 tryptophanyl-tRNA syn 97.3 0.0017 3.8E-08 66.2 10.5 90 317-415 181-276 (368)
102 PRK13354 tyrosyl-tRNA syntheta 97.2 0.00042 9E-09 71.8 5.5 61 335-405 184-244 (410)
103 PRK05743 ileS isoleucyl-tRNA s 97.2 0.00073 1.6E-08 76.8 7.0 69 342-417 548-618 (912)
104 PTZ00126 tyrosyl-tRNA syntheta 97.1 0.0059 1.3E-07 62.7 12.2 72 335-415 208-282 (383)
105 TIGR00392 ileS isoleucyl-tRNA 97.0 0.0011 2.4E-08 75.1 6.3 68 342-416 567-636 (861)
106 TIGR00234 tyrS tyrosyl-tRNA sy 96.9 0.014 3E-07 59.9 12.8 58 337-404 177-234 (377)
107 PRK06039 ileS isoleucyl-tRNA s 96.8 0.002 4.3E-08 73.9 6.5 68 342-416 548-617 (975)
108 COG0495 LeuS Leucyl-tRNA synth 96.8 0.001 2.2E-08 73.8 3.8 72 342-416 529-604 (814)
109 TIGR00396 leuS_bact leucyl-tRN 96.8 0.00094 2E-08 75.2 3.6 72 342-416 523-629 (842)
110 PLN02843 isoleucyl-tRNA synthe 96.8 0.0024 5.3E-08 73.0 6.8 59 342-407 567-627 (974)
111 PRK13804 ileS isoleucyl-tRNA s 96.7 0.0028 6.1E-08 72.5 6.7 73 336-416 582-655 (961)
112 PRK05729 valS valyl-tRNA synth 96.6 0.0026 5.7E-08 72.2 5.5 69 342-416 476-545 (874)
113 KOG0433 Isoleucyl-tRNA synthet 96.5 0.021 4.6E-07 61.8 11.3 124 139-303 66-196 (937)
114 COG0525 ValS Valyl-tRNA synthe 96.4 0.0052 1.1E-07 68.4 6.1 44 371-417 508-551 (877)
115 PLN02563 aminoacyl-tRNA ligase 96.3 0.003 6.5E-08 71.9 3.5 26 391-416 723-748 (963)
116 PTZ00427 isoleucine-tRNA ligas 96.3 0.0062 1.3E-07 70.9 6.0 72 336-416 672-745 (1205)
117 TIGR00395 leuS_arch leucyl-tRN 96.2 0.01 2.2E-07 67.9 7.3 69 342-416 576-645 (938)
118 COG0060 IleS Isoleucyl-tRNA sy 96.1 0.0045 9.7E-08 69.5 3.7 90 312-414 531-625 (933)
119 PRK12300 leuS leucyl-tRNA synt 96.1 0.011 2.5E-07 67.2 6.8 39 375-416 564-602 (897)
120 PLN02882 aminoacyl-tRNA ligase 96.0 0.011 2.5E-07 68.7 6.6 72 336-416 566-639 (1159)
121 PLN02381 valyl-tRNA synthetase 95.9 0.0094 2E-07 68.8 5.3 61 342-408 611-672 (1066)
122 PRK14900 valS valyl-tRNA synth 95.8 0.0089 1.9E-07 69.0 4.6 68 342-416 494-563 (1052)
123 COG0162 TyrS Tyrosyl-tRNA synt 95.8 0.021 4.5E-07 58.9 6.8 51 342-400 183-233 (401)
124 PLN02943 aminoacyl-tRNA ligase 95.7 0.011 2.3E-07 67.7 4.9 69 342-416 539-608 (958)
125 cd00395 Tyr_Trp_RS_core cataly 95.6 0.012 2.6E-07 57.8 3.9 87 317-415 133-222 (273)
126 PLN02959 aminoacyl-tRNA ligase 95.3 0.025 5.3E-07 65.6 5.8 34 382-416 710-743 (1084)
127 PTZ00419 valyl-tRNA synthetase 95.2 0.015 3.4E-07 66.9 3.7 60 342-407 541-601 (995)
128 KOG1147 Glutamyl-tRNA syntheta 95.0 0.089 1.9E-06 55.3 8.3 43 254-296 253-296 (712)
129 cd00805 TyrRS_core catalytic c 94.9 0.019 4.1E-07 56.3 2.9 59 344-411 156-214 (269)
130 KOG0434 Isoleucyl-tRNA synthet 94.4 0.16 3.5E-06 54.9 8.5 130 129-294 39-173 (1070)
131 PRK12556 tryptophanyl-tRNA syn 93.7 0.065 1.4E-06 54.1 4.0 75 336-414 148-225 (332)
132 PRK00390 leuS leucyl-tRNA synt 93.7 0.056 1.2E-06 60.9 3.8 66 342-416 526-595 (805)
133 KOG1247 Methionyl-tRNA synthet 93.3 0.11 2.4E-06 53.1 4.6 117 125-295 11-132 (567)
134 PF00579 tRNA-synt_1b: tRNA sy 93.3 0.05 1.1E-06 53.8 2.2 74 336-415 148-223 (292)
135 COG0180 TrpS Tryptophanyl-tRNA 93.0 0.078 1.7E-06 52.9 3.2 93 317-415 129-223 (314)
136 PRK12284 tryptophanyl-tRNA syn 92.2 0.17 3.6E-06 52.6 4.4 78 335-416 146-227 (431)
137 KOG0437 Leucyl-tRNA synthetase 91.7 0.99 2.2E-05 49.5 9.5 63 126-188 42-104 (1080)
138 PRK00927 tryptophanyl-tRNA syn 91.4 0.21 4.6E-06 50.4 4.1 93 317-415 122-220 (333)
139 PRK12282 tryptophanyl-tRNA syn 91.0 0.22 4.8E-06 50.3 3.8 91 317-415 126-220 (333)
140 PLN02486 aminoacyl-tRNA ligase 89.3 0.31 6.7E-06 50.2 3.2 63 344-414 224-289 (383)
141 KOG0432 Valyl-tRNA synthetase 88.9 0.29 6.4E-06 54.3 2.8 34 371-407 576-609 (995)
142 KOG0433 Isoleucyl-tRNA synthet 88.7 0.61 1.3E-05 51.0 5.0 63 338-408 563-630 (937)
143 PRK12283 tryptophanyl-tRNA syn 87.1 0.66 1.4E-05 47.8 4.0 34 382-415 255-288 (398)
144 KOG1148 Glutaminyl-tRNA synthe 83.9 1.5 3.1E-05 47.0 4.7 61 127-188 246-334 (764)
145 PLN02886 aminoacyl-tRNA ligase 78.9 3 6.4E-05 43.1 4.9 78 336-415 183-278 (389)
146 PTZ00348 tyrosyl-tRNA syntheta 78.5 2.4 5.2E-05 46.8 4.3 71 336-415 174-247 (682)
147 cd00805 TyrRS_core catalytic c 72.8 3.4 7.4E-05 40.4 3.3 38 134-177 4-42 (269)
148 COG4746 Uncharacterized protei 64.6 20 0.00043 28.1 5.2 71 8-80 1-78 (80)
149 PF00579 tRNA-synt_1b: tRNA sy 62.7 6.5 0.00014 38.7 3.0 40 132-177 7-46 (292)
150 KOG0437 Leucyl-tRNA synthetase 59.6 6.3 0.00014 43.6 2.4 24 389-412 708-731 (1080)
151 KOG0434 Isoleucyl-tRNA synthet 58.1 4.2 9E-05 44.5 0.7 34 382-415 592-625 (1070)
152 cd00395 Tyr_Trp_RS_core cataly 57.1 12 0.00027 36.6 3.8 34 134-171 3-37 (273)
153 PTZ00348 tyrosyl-tRNA syntheta 56.3 9.7 0.00021 42.2 3.2 41 132-177 34-74 (682)
154 PLN02886 aminoacyl-tRNA ligase 48.7 12 0.00027 38.6 2.4 40 132-177 48-87 (389)
155 PLN02486 aminoacyl-tRNA ligase 44.3 29 0.00063 35.8 4.3 40 133-177 76-116 (383)
156 PRK12284 tryptophanyl-tRNA syn 43.5 20 0.00043 37.6 3.0 41 133-177 5-45 (431)
157 COG2515 Acd 1-aminocyclopropan 43.3 83 0.0018 31.5 7.0 56 309-365 31-90 (323)
158 cd01134 V_A-ATPase_A V/A-type 43.0 3.9E+02 0.0085 27.5 14.2 126 70-214 171-302 (369)
159 PRK00927 tryptophanyl-tRNA syn 42.7 17 0.00036 36.8 2.2 41 134-180 5-45 (333)
160 PRK12556 tryptophanyl-tRNA syn 40.4 21 0.00045 36.1 2.5 41 133-177 6-46 (332)
161 PF08373 RAP: RAP domain; Int 39.1 22 0.00047 25.7 1.8 21 154-174 18-40 (58)
162 PF10007 DUF2250: Uncharacteri 38.1 45 0.00098 27.3 3.7 43 277-319 36-78 (92)
163 cd02156 nt_trans nucleotidyl t 36.0 20 0.00043 29.4 1.3 14 136-150 5-18 (105)
164 TIGR02855 spore_yabG sporulati 35.4 1.4E+02 0.0031 29.4 7.2 67 336-411 196-263 (283)
165 PRK12282 tryptophanyl-tRNA syn 30.6 26 0.00056 35.5 1.4 41 133-179 5-45 (333)
166 COG1832 Predicted CoA-binding 29.0 82 0.0018 27.8 4.0 36 126-172 15-50 (140)
167 COG1656 Uncharacterized conser 28.5 42 0.00091 30.4 2.2 22 156-177 17-38 (165)
168 PF01927 Mut7-C: Mut7-C RNAse 28.5 46 0.00099 29.4 2.4 21 156-176 11-31 (147)
169 COG0180 TrpS Tryptophanyl-tRNA 26.4 40 0.00086 33.9 1.8 39 134-177 9-47 (314)
170 COG2945 Predicted hydrolase of 26.3 93 0.002 29.2 4.1 37 138-175 34-70 (210)
171 PF09456 RcsC: RcsC Alpha-Beta 25.7 47 0.001 27.2 1.8 25 148-172 6-30 (92)
172 PRK05320 rhodanese superfamily 25.6 1.7E+02 0.0038 28.3 6.1 79 67-151 15-94 (257)
173 PF04028 DUF374: Domain of unk 25.4 64 0.0014 25.2 2.5 20 153-172 21-40 (74)
174 KOG2713 Mitochondrial tryptoph 25.2 37 0.0008 33.6 1.3 90 317-417 139-240 (347)
175 KOG1118 Lysophosphatidic acid 24.7 3E+02 0.0064 27.7 7.3 35 152-186 87-121 (366)
176 KOG2623 Tyrosyl-tRNA synthetas 23.4 1.8E+02 0.0038 30.3 5.7 57 340-403 228-285 (467)
177 PRK04192 V-type ATP synthase s 22.2 1E+03 0.022 26.2 11.6 83 126-215 288-373 (586)
178 TIGR00125 cyt_tran_rel cytidyl 22.1 41 0.00088 24.6 0.8 11 141-151 9-19 (66)
179 PF02525 Flavodoxin_2: Flavodo 21.3 1.6E+02 0.0035 26.7 4.8 39 128-172 1-40 (199)
180 PF07747 MTH865: MTH865-like f 21.2 49 0.0011 26.0 1.0 36 43-79 37-72 (75)
181 PF12025 Phage_C: Phage protei 20.9 31 0.00067 25.9 -0.1 34 259-292 33-68 (68)
182 KOG1495 Lactate dehydrogenase 20.5 3.7E+02 0.0081 26.7 7.0 86 327-425 144-250 (332)
No 1
>PLN02286 arginine-tRNA ligase
Probab=100.00 E-value=7.7e-96 Score=777.26 Aligned_cols=386 Identities=81% Similarity=1.306 Sum_probs=354.3
Q ss_pred ccccccc-CCCCccccchhhHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCceeeeEEecCcEEEEeeCHHHHHHHHHH
Q 014355 34 RPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQK 112 (426)
Q Consensus 34 ~~~~~~~-~~~~GD~~t~~a~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~i~~v~vagpGfiNf~l~~~~~~~~l~~ 112 (426)
.+.+++| +++|||||||+||.|||.++++++..++|++||++|+++|..+++|++|+++|||||||+|++.++.+.+..
T Consensus 22 ~~~i~~~~~~~~GD~a~n~a~~lak~~~~~~~~~k~P~~iA~~i~~~l~~~~~i~~v~vagpGfiNf~l~~~~l~~~l~~ 101 (576)
T PLN02286 22 EPLVAACTNPKFGDYQCNNAMGLWSKLKGKGTSFKNPRAVAQAIVKNLPASEMIESTSVAGPGFVNVRLSASWLAKRIER 101 (576)
T ss_pred CeEEecCCCCCCCCcccchHHHHHHHhCccccccCCHHHHHHHHHHhCccccceeeEEEcCCCeEEEEECHHHHHHHHHH
Confidence 3456655 689999999999999999998888889999999999999987778999999999999999999999999999
Q ss_pred HHHcCCCCCCccCCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhC
Q 014355 113 MLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKF 192 (426)
Q Consensus 113 ~l~~~~~~~~~~~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~ 192 (426)
++..+..++.+...+++|+||||||||||||||||+|||||||+|||||+++||+|+|+|||||||+||++++.++..++
T Consensus 102 ~~~~~~~~g~~~~~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~ 181 (576)
T PLN02286 102 MLVDGIDTWAPTLPVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKF 181 (576)
T ss_pred HHHcCcccCCCCCCCceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhc
Confidence 88776554433445689999999999999999999999999999999999999999999999999999999998887777
Q ss_pred CCCCccccccHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc
Q 014355 193 PNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE 272 (426)
Q Consensus 193 ~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E 272 (426)
|+.....+.++.++..+|+++++.++.+|++.+++++.+.+||+||++++++|++++++++.+|+++|++|||+||..+|
T Consensus 182 ~~~~~~~~~~i~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~ge 261 (576)
T PLN02286 182 PNWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEKGE 261 (576)
T ss_pred CcccccCcccHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCc
Confidence 76544556789999889999999999999999999999999999999999999999999999999999999999987789
Q ss_pred ccccCcHHHHHHHHHHCCCEEEeCCeEEEEecCCCCCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCcccc
Q 014355 273 SFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLH 352 (426)
Q Consensus 273 s~~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~h 352 (426)
|+|.+.++++++.|+++|++|++|||+|+++++.++|+||+||||++||+|+|||||++|++.+++|++|||||++|++|
T Consensus 262 s~y~~~~~~vi~~L~~~g~~~e~dGa~~v~l~~~~~~~vl~ksDGt~tY~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~h 341 (576)
T PLN02286 262 SFYNPYIPGVIEELESKGLVVESDGARVIFVEGFDIPLIVVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQH 341 (576)
T ss_pred hhhhhhHHHHHHHHHHCCCEEeeCCceEeeccCCCCceEEEECCCchhhHHHHHHHHHHHHhccCCCEEEEEEeCcHHHH
Confidence 99998899999999999999999999999987766789999999999999999999999998789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHHHHHhc
Q 014355 353 FDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERG 421 (426)
Q Consensus 353 f~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~i~~~~ 421 (426)
|+||++++++|||.++ ++...+.|+.||||++.+|+|||||+|++|+|+|||+++.++|++.+.+|+
T Consensus 342 f~~v~~~l~~lG~~~~--~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~ 408 (576)
T PLN02286 342 FDMVFKAAKRAGWLPE--DTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERG 408 (576)
T ss_pred HHHHHHHHHHcCCCcc--ccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999998421 113579999999998788889999999999999999999999999999985
No 2
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.1e-95 Score=762.62 Aligned_cols=398 Identities=33% Similarity=0.532 Sum_probs=350.6
Q ss_pred hHHHHHHHHHHHHHHhcC-CCCCCCccccccc-CCCCccccchhhHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCcee
Q 014355 10 NVKRELEKVFDLALKATV-PNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIE 87 (426)
Q Consensus 10 ~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~-~~~~GD~~t~~a~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~i~ 87 (426)
++++.+++.|.+++.+.. . .....+.+++| +++|||||||+||.|||.++ +||++||++|+++|..++.|+
T Consensus 2 ~i~~~l~~~i~~~l~~~~~~-~~~~~~~ve~~~~~~~GD~a~n~a~~laK~~~------~~P~eiA~~i~~~l~~~~~~~ 74 (577)
T COG0018 2 NIKQLLKEKIAEALSAAGLD-VEEIEILVEPPKDPEHGDFATNIAFQLAKKLG------KNPREIAEEIAEKLDTDEIIE 74 (577)
T ss_pred CHHHHHHHHHHHHHHHhhcc-ccccccceecCCCCCcccccchHHHHHhhhcC------CCHHHHHHHHHHhccccCcEe
Confidence 345556666666666543 2 12234566655 67999999999999999999 999999999999998877899
Q ss_pred eeEEecCcEEEEeeCHHHHHHHHHHHHHcCCC-CC-CccCCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCC
Q 014355 88 SCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIE-TW-APKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSN 165 (426)
Q Consensus 88 ~v~vagpGfiNf~l~~~~~~~~l~~~l~~~~~-~~-~~~~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G 165 (426)
+|+++|||||||++++.++.+.+.+++.++.. ++ ...+++++|+||||||||||||||||+|||||||+|||+|+++|
T Consensus 75 ~veiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~G 154 (577)
T COG0018 75 KVEIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLG 154 (577)
T ss_pred EEEEcCCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcC
Confidence 99999999999999999999999999987444 33 34568999999999999999999999999999999999999999
Q ss_pred CeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHhhcccCCChHHH-HHHHHHHHHHhcCChHHHHH
Q 014355 166 VEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFK-ERAQQAVVRLQSGEPKYHEA 244 (426)
Q Consensus 166 ~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~-~~a~~~~~~le~gd~~~~~~ 244 (426)
|+|+|+|||||||+||++|+.++.....+.......++.++.+.|+++++.++++++.. +++++.+.++|.||+++ ++
T Consensus 155 y~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~-~l 233 (577)
T COG0018 155 YDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEA-EL 233 (577)
T ss_pred CCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchHHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHH-HH
Confidence 99999999999999999999888665554221123456677788999999888877633 78999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcee-e--eccccccCcHHHHHHHHHHCCCEEEeCCeEEEEec-----CCCCCeEEEecC
Q 014355 245 WAQICEISRKEFDKVYKRLRVDLE-E--KGESFYNPYIPGVIDELSKQGLVEESQGARVIFIE-----GVNIPLIIVKSD 316 (426)
Q Consensus 245 w~~~~~~~~~~~~~~~~~Lgi~fd-~--~~Es~~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~-----g~~~d~Vl~ksD 316 (426)
|+++++.++.+|+++|++|||+|| | +||+++++.+.++++.|+++|++|+++||+|+++. |+++|+||+|||
T Consensus 234 w~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~~~~~~gd~~~~vl~KSD 313 (577)
T COG0018 234 WRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLLKFKKFGDDKDRVLQKSD 313 (577)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHHHHHHHHhcCCEeeeCCeEEEehhhhhhcCCCCCeEEEEcC
Confidence 999999999999999999999996 4 47789999999999999999999999999988774 778999999999
Q ss_pred CccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccC
Q 014355 317 GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF 396 (426)
Q Consensus 317 G~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~ 396 (426)
||+||+|||||||+||++ ++||++|||+|+||++||+|++++++++|+.++ ...+.|++||||++++|+|||||+
T Consensus 314 Gt~lY~t~DIAy~~~K~~-~~~d~~IyV~gadq~~~~~ql~~~l~~~g~~~~----~~~~~h~~~~l~~~~~g~kmStR~ 388 (577)
T COG0018 314 GTYLYFTRDIAYHLYKFE-RGFDKLIYVLGADQHGHFKQLKAVLELLGYGPD----KEVLLHQGVGLVRGGEGVKMSTRA 388 (577)
T ss_pred CCeeeehhHHHHHHHHHh-cCCCEEEEEeCCcchhHHHHHHHHHHHhcCCCc----cceEEEEEEeeeECCCCccccccC
Confidence 999999999999999995 899999999999999999999999999999532 257999999999999999999999
Q ss_pred CCceeHHHHHHHHHHHHHHHHHHh
Q 014355 397 SEVVRLVDLLDEAKNRSKAVLIER 420 (426)
Q Consensus 397 G~~v~L~dLlde~~~~a~~~i~~~ 420 (426)
|++|||+||+|++.+||.+.|+++
T Consensus 389 G~~vtl~dllde~~era~~~~~~~ 412 (577)
T COG0018 389 GNVVTLDDLLDEAGERAPEEMEEK 412 (577)
T ss_pred CceEEHHHHHHHHHHHhhhHhhhh
Confidence 999999999999999999998875
No 3
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.3e-91 Score=744.05 Aligned_cols=396 Identities=32% Similarity=0.511 Sum_probs=348.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCccccchhhHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCceee
Q 014355 10 NVKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIES 88 (426)
Q Consensus 10 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~~GD~~t~~a~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~i~~ 88 (426)
+++..+++.|.+++....+.. ...+.+++| +++||||||| +|.|||.++ ++|++||++|++.|+. +.|++
T Consensus 2 ~~~~~i~~~l~~~l~~~~~~~-~~~~~i~~~~~~~~GD~~~~-~~~lak~~~------~~P~~iA~~i~~~l~~-~~i~~ 72 (562)
T PRK12451 2 DYKTQFAESLSNIFTNELTQQ-QILDLIETPKQDEFGDAAFP-CFSLAKQYK------KAPAIIAKEVAEKLSD-PFFTK 72 (562)
T ss_pred hHHHHHHHHHHHHHHhhcccc-ccceeeecCCCCCCCcccch-HHHHHHHcC------CCHHHHHHHHHHhccc-cccce
Confidence 356677777888776542211 112345544 6799999999 699999999 9999999999999965 46899
Q ss_pred eEEecCcEEEEeeCHHHHHHHH-HHHHHcCCCCCCc-cCCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCC
Q 014355 89 CSVAGPGFVNVVLSKNWMAKNI-QKMLVDGIETWAP-KLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNV 166 (426)
Q Consensus 89 v~vagpGfiNf~l~~~~~~~~l-~~~l~~~~~~~~~-~~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~ 166 (426)
++++|| ||||+|+++++...+ ..++..+..++.. .+++++|+||||||||||||||||+||++|||+|||||+++||
T Consensus 73 ve~~g~-fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~ 151 (562)
T PRK12451 73 VEAVGP-YVNVFFNRETVSDAVLKTILAEKEEYGQNHFGCEKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGY 151 (562)
T ss_pred eEeeCC-EEEEEECHHHHHHHHHHHHHhhHhhcCCCccCCCCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCC
Confidence 999996 999999999998775 4676665544432 2457899999999999999999999999999999999999999
Q ss_pred eeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHH
Q 014355 167 EVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWA 246 (426)
Q Consensus 167 ~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~ 246 (426)
+|+|+|||||||+||++++.++ .++++.....++++.++..+|+++++.++.+|++++++++.+.+||+||++..++|+
T Consensus 152 ~V~r~nyinD~G~Q~~~l~~~~-~~~~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~ 230 (562)
T PRK12451 152 EVVGINYIGDWGTQFGKLITAY-KKWGNEAVVKEDPIRELFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWN 230 (562)
T ss_pred CeEEEeeecCchHHHHHHHHHH-HHhCCccccccCchHHHHHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 9999999999999999999766 455543333556899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCceee-eccccccCcHHHHHHHHHHCCCEEEeCCeEEEEecCC-CCCeEEEecCCccccccc
Q 014355 247 QICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGV-NIPLIIVKSDGGFNYAST 324 (426)
Q Consensus 247 ~~~~~~~~~~~~~~~~Lgi~fd~-~~Es~~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~g~-~~d~Vl~ksDG~~tY~t~ 324 (426)
.++++++++|+++|++|||+||+ .+||+|.+.+++++++|+++|++|++|||+|+++++. ++|+||+||||++||+|+
T Consensus 231 ~~~~~~l~~~~~~~~~l~V~fD~~~~es~~~~~~~~v~~~L~~~g~~~e~dGa~~~~~~~~g~~~~vl~ksDGt~~Y~t~ 310 (562)
T PRK12451 231 WFRHESLKEFSRIYELLGVEFTNFQGEAFYNDLMEDFIGILEEHDLLEESEGALVVNLEEEGMPPCLIRKSDGATIYATR 310 (562)
T ss_pred HHHHHHHHHHHHHHHHcCCCceeecchHhhhhhHHHHHHHHHHCCCEEecCCeEEEEecccCCCceEEEeCCCccccchh
Confidence 99999999999999999999985 4789998889999999999999999999999998843 269999999999999999
Q ss_pred cHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHH
Q 014355 325 DLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (426)
Q Consensus 325 DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~d 404 (426)
|||||.+|++.+++|++|||||++|++||+|+++++++|||. ++..+.|+.||+|.. +|+|||||+|++|+|+|
T Consensus 311 DiA~~~~k~~~~~~d~~IyV~g~dq~~h~~~l~~~~~~lg~~-----~~~~l~h~~~g~V~~-~g~kmStR~G~~v~l~d 384 (562)
T PRK12451 311 DLTAALYRQNTFGFDKALYVVGPEQSLHFNQFFTVLKKLGYT-----WVDGMEHVPFGLILK-DGKKMSTRKGRVVLLEE 384 (562)
T ss_pred HHHHHHHHhhccCCCEEEEEeCCcHHHHHHHHHHHHHHcCCC-----cccCeEEEeeeeEec-CCCCCcCCCCCeeEHHH
Confidence 999999999888999999999999999999999999999984 235799999999997 56699999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 014355 405 LLDEAKNRSKAVLIERGI 422 (426)
Q Consensus 405 Llde~~~~a~~~i~~~~~ 422 (426)
|||++.+||++.+.+|+.
T Consensus 385 Lldea~~~a~~~~~~~~~ 402 (562)
T PRK12451 385 VLEEAIELAKQNIEEKNP 402 (562)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999999999874
No 4
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-88 Score=663.97 Aligned_cols=414 Identities=62% Similarity=1.050 Sum_probs=388.6
Q ss_pred cccccchHhHHHHHHHHHHHHHHhcCCCCCCCcccccc-cCCCCccccchhhHHHHHhhcCCCCCCCChHHHHHHHHHhC
Q 014355 2 ATEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAA-CTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNL 80 (426)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~~GD~~t~~a~~lak~~k~~~~~~~~P~~iA~~l~~~l 80 (426)
|..++.|.+++.++.+++..+|+.++|...++++++.| |+++||||+||.||.+++.+|+++.++ +|++||++|..+|
T Consensus 64 a~~~~~~~ni~~~L~~lF~~aik~a~Pd~~~vp~liaps~~~kFGDYQCNnAMgl~~~lK~kg~~~-~P~~va~~l~~~l 142 (656)
T KOG4426|consen 64 AKNEKFTSNIFRRLQSLFDVAIKLAFPDLPDVPLLIAPSPNAKFGDYQCNNAMGLSSKLKGKGINK-RPRDVAQELQKHL 142 (656)
T ss_pred hcCccccccHHHHHHHHHHHHHHHhCCCCCCCCceeccCcccccccccccchhhHHHHHhhcCCcc-CcHHHHHHHHhhC
Confidence 34567888999999999999999999965567777776 478999999999999999999887776 5999999999999
Q ss_pred CCCCceeeeEEecCcEEEEeeCHHHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHH
Q 014355 81 PPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARM 160 (426)
Q Consensus 81 ~~~~~i~~v~vagpGfiNf~l~~~~~~~~l~~~l~~~~~~~~~~~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larl 160 (426)
+.++.|++++|+||||||++|+.+|++..+..++.+|-. .|....++|+|+|||||++|.|||||+||+||||+|||+
T Consensus 143 P~se~vEk~~iagpGFiNv~Ls~d~~~~~i~nll~~GV~--~P~l~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~Rl 220 (656)
T KOG4426|consen 143 PTSEMVEKCEIAGPGFINVFLSKDYMSKQISNLLVNGVK--LPTLSVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRL 220 (656)
T ss_pred CchhhhhhhcccCCceEEEEechHHHHHHHHHHHHcCCC--CcccceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHH
Confidence 998999999999999999999999999999999988654 344456899999999999999999999999999999999
Q ss_pred HHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChH
Q 014355 161 LEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPK 240 (426)
Q Consensus 161 l~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~ 240 (426)
|++.|++|.|.|||||||+|||||+++++++||+..... .+|+||+-.|++.+.+++.+++|+++|.+..++||.|||.
T Consensus 221 lE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vs-p~IgDLQvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~ 299 (656)
T KOG4426|consen 221 LEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVS-PPIGDLQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPD 299 (656)
T ss_pred HHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccC-CCchhHHHHHHHHHhccCcCHHHHHHHHHHeeecccCCCh
Confidence 999999999999999999999999999999999855433 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccccCcHHHHHHHHHHCCCEEEeCCeEEEEecCCCCCeEEEecCCccc
Q 014355 241 YHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFN 320 (426)
Q Consensus 241 ~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~Es~~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~g~~~d~Vl~ksDG~~t 320 (426)
.++.|..+|+.|+.+|...|++|.|+....|||||++.+.++++.|..+|++.++||+-++..+|-+.|..++||||.+|
T Consensus 300 ~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~GESFYq~~m~~vveel~~kglvee~~Gr~i~f~~g~~IPLtvVKSDGGft 379 (656)
T KOG4426|consen 300 IRKAWALICDVSRKEFQKVYNRLDISLKERGESFYQDRMAEVVEELKSKGLVEEDDGRRIMFPEGCDIPLTVVKSDGGFT 379 (656)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchHhhcchhhhhhHHHHHHHHHhcCCceeecCCceEeccCCCCcceEEEecCCCcc
Confidence 99999999999999999999999999988899999999999999999999999999999999999889999999999999
Q ss_pred cccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCce
Q 014355 321 YASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 400 (426)
Q Consensus 321 Y~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v 400 (426)
|.|+|+|+..||+....+|++|||++++|..||..+|++++..||.. +..++..|++||+|++.+|+|+.||.|.+|
T Consensus 380 YdtsDlaAl~yRl~EEkadwiIYVvD~GQs~Hf~t~fkAar~~gwld---~~~~RV~HvgFGlVLGeD~KkFkTRsgetV 456 (656)
T KOG4426|consen 380 YDTSDLAALKYRLNEEKADWIIYVVDSGQSQHFNTIFKAARKAGWLD---PTYPRVEHVGFGLVLGEDKKKFKTRSGETV 456 (656)
T ss_pred cccchHHHHHHHHHHhhcCeEEEEeeCchhHHHHHHHHHHHHcCccC---CCccceeeeeeeeEEccCccccccccccee
Confidence 99999999999999999999999999999999999999999999973 567899999999999999999999999999
Q ss_pred eHHHHHHHHHHHHHHHHHHhcc
Q 014355 401 RLVDLLDEAKNRSKAVLIERGI 422 (426)
Q Consensus 401 ~L~dLlde~~~~a~~~i~~~~~ 422 (426)
.|-|||+|+.+|+++.+.|||.
T Consensus 457 rL~DLLdEg~kRs~~~Liergr 478 (656)
T KOG4426|consen 457 RLLDLLDEGKKRSKEKLIERGR 478 (656)
T ss_pred eHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999985
No 5
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=2.3e-85 Score=698.15 Aligned_cols=392 Identities=32% Similarity=0.507 Sum_probs=340.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCccccchhhHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCceeeeE
Q 014355 12 KRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCS 90 (426)
Q Consensus 12 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~~GD~~t~~a~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~i~~v~ 90 (426)
++.+++.|.+++........ ..+.+++| ++.|||||||+||.+||.++ ++|++||++|++.|...+.|++|+
T Consensus 2 ~~~i~~~~~~~l~~~~~~~~-~~~~i~~~~~~~~GD~~~~~a~~lak~~~------~~P~~iA~~i~~~l~~~~~i~~ve 74 (566)
T TIGR00456 2 KTLLKDEISAALLKAGLSKE-SEILLEETPNPEFGDYASNIAFPLAKVLK------KNPRAIAEEIVLKLKTGEIIEKVE 74 (566)
T ss_pred hHHHHHHHHHHHHhcccccc-cceeeecCCCCCCCccccHHHHHHHHHcC------CCHHHHHHHHHHhCCCcCcEeEEE
Confidence 45566777777755411010 12345544 68999999999999999999 999999999999998777899999
Q ss_pred EecCcEEEEeeCHHHHHHH-HHHHHHcCCCCCCccCCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeE
Q 014355 91 VAGPGFVNVVLSKNWMAKN-IQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVL 169 (426)
Q Consensus 91 vagpGfiNf~l~~~~~~~~-l~~~l~~~~~~~~~~~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~ 169 (426)
++|| ||||+|+++++.+. +..++..+..++.....+++|+||||||||+|||||||+||+++||+|+|+|+++||+|.
T Consensus 75 ~~gp-fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~ 153 (566)
T TIGR00456 75 AAGP-FINFFLSPQKLLERLIQKILTQKEDYGSKKLKNKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVI 153 (566)
T ss_pred EeCC-EEEEEEcHHHHHHHHHHHHHhcccccCCCCCCCCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCee
Confidence 9998 99999999888777 456776655544322237899999999999999999999999999999999999999999
Q ss_pred EecccCCchhHHHHHHHHHHhhCCCCC-ccccccHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 014355 170 RRNHVGDWGTQFGMLIEYLFEKFPNSE-DANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQI 248 (426)
Q Consensus 170 ~~~yv~D~G~Q~~~l~~~~~~~~~~~~-~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~ 248 (426)
|+|||||||+||++++.++.....+.. .....++.++...|+++++.++.++++.+++++.+.++|+||++..++|+.+
T Consensus 154 r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~ 233 (566)
T TIGR00456 154 REYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRL 233 (566)
T ss_pred EEeeecchHHHHHHHHHHHHHhCCccccCcccCChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 999999999999999987754433211 1234567788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcee-ee--ccccccCcHHHHHHHHHHCCCEEEeCCeEEEEec--CCC-CCeEEEecCCccccc
Q 014355 249 CEISRKEFDKVYKRLRVDLE-EK--GESFYNPYIPGVIDELSKQGLVEESQGARVIFIE--GVN-IPLIIVKSDGGFNYA 322 (426)
Q Consensus 249 ~~~~~~~~~~~~~~Lgi~fd-~~--~Es~~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~--g~~-~d~Vl~ksDG~~tY~ 322 (426)
+++++++|+++|++|||+|| |+ +|+++.+.++++++.|+++|++|++ ||+|++++ |++ +|+||+||||++||+
T Consensus 234 ~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~~~~~d~~~~~vl~ksDGt~~Y~ 312 (566)
T TIGR00456 234 VEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPKVLEDLKEKGLVVED-GALWLDLTLFGDKDKDRVLQKSDGTYLYL 312 (566)
T ss_pred HHHHHHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHCCCEEEc-CCEEEEcccccCCCCCeEEEECCCCceec
Confidence 99999999999999999997 55 5678889999999999999999977 99999987 455 799999999999999
Q ss_pred cccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeH
Q 014355 323 STDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRL 402 (426)
Q Consensus 323 t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L 402 (426)
|+|||||.+|++. ++|++|||||++|++||+|+++++++||+. ...++.|++||+|.+ .|||||+||+|++
T Consensus 313 t~DiA~~~~k~~~-~~d~iI~V~g~~q~~h~~~v~~~l~~lG~~-----~~~~l~h~~~~~V~~---~kmSkr~Gn~V~~ 383 (566)
T TIGR00456 313 TRDIAYHLDKLER-GFDKMIYVWGSDHHLHIAQFFAILEKLGFY-----KKKELIHLNFGMVPL---GSMKTRRGNVISL 383 (566)
T ss_pred hhhHHHHHHHHhc-CCCEEEEEecCcHHHHHHHHHHHHHHcCCC-----CCCceEEEEEEEEEC---CCCCccCCceeeH
Confidence 9999999999965 999999999999999999999999999983 245799999999986 4799999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 014355 403 VDLLDEAKNRSKAVLIERG 421 (426)
Q Consensus 403 ~dLlde~~~~a~~~i~~~~ 421 (426)
+||++++.+||.+.+.+|+
T Consensus 384 ~dll~~~~~ra~~~i~~~~ 402 (566)
T TIGR00456 384 DNLLDEASKRAGNVITIKN 402 (566)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999886
No 6
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.9e-75 Score=615.31 Aligned_cols=342 Identities=35% Similarity=0.523 Sum_probs=298.4
Q ss_pred hHhHHHHHHHHHHHHHHhcCCCCCCCcccccc-cCCCCccccchhhHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCce
Q 014355 8 TGNVKRELEKVFDLALKATVPNETDVRPLIAA-CTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMI 86 (426)
Q Consensus 8 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~~GD~~t~~a~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~i 86 (426)
|+++++.+++.+.+++......... ...+++ |++++|||+||+||.+||.++ ++|++||++|++. |
T Consensus 2 ~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~gd~~~~~a~~lak~~~------~~p~~ia~~i~~~------i 68 (507)
T PRK01611 2 MMDIKELLAEALAAALEAGGLPELP-AVLIERPKDPEHGDYATNVAMQLAKKLK------KNPREIAEEIVEA------I 68 (507)
T ss_pred hHHHHHHHHHHHHHHHHhccccccc-cceeecCCCCCccCeecHHHHHHHHHcC------CCHHHHHHHHHhh------e
Confidence 4568888888888888653210110 133554 468999999999999999999 9999999999985 7
Q ss_pred eeeEEecCcEEEEeeCHHHHHHHHHHHHHcCCCCCC-ccCCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCC
Q 014355 87 ESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWA-PKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSN 165 (426)
Q Consensus 87 ~~v~vagpGfiNf~l~~~~~~~~l~~~l~~~~~~~~-~~~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G 165 (426)
++++++|||||||+|++.++.+.+.+++..+..++. +.+.+++|+||||||||+|||||||+|++++||+|+|+|+++|
T Consensus 69 ~~v~~~~~gfiN~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G 148 (507)
T PRK01611 69 EKVEIAGPGFINFFLDPAALAELVLAILEAGERYGRSDIGKGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAG 148 (507)
T ss_pred eEEEEeCCCEEEEEECHHHHHHHHHHHHhchhhcCCCcCCCCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999888766555443 3357889999999999999999999999999999999999999
Q ss_pred CeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHH
Q 014355 166 VEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAW 245 (426)
Q Consensus 166 ~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w 245 (426)
|+|+++||+||||+|++.++.+. ...|
T Consensus 149 ~~V~~~~~i~D~G~qi~~~a~~~-----------------------------------------------------~~~~ 175 (507)
T PRK01611 149 YDVTREYYVNDAGTQIGMLIASL-----------------------------------------------------ELLW 175 (507)
T ss_pred CcEEEEeeeCCccHHHHHHHHHH-----------------------------------------------------HHHH
Confidence 99999999999999999876421 0168
Q ss_pred HHHHHHHHHHHHHHHHHcCCcee-eecc--ccccCcHHHHHHHHHHCCCEE-EeCCeEEEEec--CCCCCeEEEecCCcc
Q 014355 246 AQICEISRKEFDKVYKRLRVDLE-EKGE--SFYNPYIPGVIDELSKQGLVE-ESQGARVIFIE--GVNIPLIIVKSDGGF 319 (426)
Q Consensus 246 ~~~~~~~~~~~~~~~~~Lgi~fd-~~~E--s~~~~~v~~vi~~L~~~g~~~-~~dGa~~~~~~--g~~~d~Vl~ksDG~~ 319 (426)
+++++.+++.|+++|++|||+|| |.+| +.+.+.+.++++.|+++|++| +++|++||+++ |+++|+||+||||++
T Consensus 176 ~~~~~~~~~~~~~~l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~vl~ksdG~~ 255 (507)
T PRK01611 176 RKAVDISLDEIKEDLDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTEFGDDKDRVLIKSDGTY 255 (507)
T ss_pred HHHHHHHHHHHHHHHHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchhhCCCCCeEEEECCCCc
Confidence 89999999999999999999996 5544 466789999999999999999 99999999987 556799999999999
Q ss_pred ccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCc
Q 014355 320 NYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 399 (426)
Q Consensus 320 tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~ 399 (426)
||+|+|||||++|++. +|++|||||++|++||+|++++++++|+.+ +....+.|+.||+|++++|+|||||+||+
T Consensus 256 ~Y~t~Dia~~~~k~~~--~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~---~~~~~~~h~~~glv~~~~g~KMSkR~Gn~ 330 (507)
T PRK01611 256 TYFTRDIAYHLYKFER--FDRVIYVVGADHHGHFKRLKAALKALGYDP---DALEVLLHQMVGLVRGGEGVKMSTRAGNV 330 (507)
T ss_pred cchHHHHHHHHHHHhh--cCEEEEEECCChHHHHHHHHHHHHHcCCCc---ccceEEEEEEEEeeECCCCCcccCCCCce
Confidence 9999999999999965 999999999999999999999999999842 11245999999999999999999999999
Q ss_pred eeHHHHHHHHHHHHHHHHHHh
Q 014355 400 VRLVDLLDEAKNRSKAVLIER 420 (426)
Q Consensus 400 v~L~dLlde~~~~a~~~i~~~ 420 (426)
|+++||++++..+|++.+.+|
T Consensus 331 i~l~dll~~a~g~~~~~~~~~ 351 (507)
T PRK01611 331 VTLDDLLDEAVGRARELIEEK 351 (507)
T ss_pred eEHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998876
No 7
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=100.00 E-value=4e-74 Score=579.78 Aligned_cols=302 Identities=37% Similarity=0.565 Sum_probs=251.5
Q ss_pred HHHHHHcCCCCCCccCCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHH
Q 014355 110 IQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLF 189 (426)
Q Consensus 110 l~~~l~~~~~~~~~~~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~ 189 (426)
|.+++.+++.+....+++++|+||||||||||||||||+||++|||+|||||+++||+|+++|||||||+||++++.++.
T Consensus 2 i~~il~~~~~y~~~~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~ 81 (354)
T PF00750_consen 2 INEILEKGEEYGSEKGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYK 81 (354)
T ss_dssp HHHHHHHGGGTT--TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHH
T ss_pred HHHHHhcchhcccccCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHH
Confidence 56777777766344578999999999999999999999999999999999999999999999999999999999997765
Q ss_pred hhCCCCCccccccHHHHHHHHHHhhcccCC-------ChHHHHHHHHHHHHHhcCChHHHHHHHH-HHHHHHHHHHHHHH
Q 014355 190 EKFPNSEDANETAIGELQEFYRRSKNRFDS-------DPAFKERAQQAVVRLQSGEPKYHEAWAQ-ICEISRKEFDKVYK 261 (426)
Q Consensus 190 ~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~-------~~~~~~~a~~~~~~le~gd~~~~~~w~~-~~~~~~~~~~~~~~ 261 (426)
....+. ....+++.++.+.|...+..... .+++.+++++.+.++|+||++..++|++ ++ +.++++|+
T Consensus 82 ~~~~~~-~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~----~~~k~~l~ 156 (354)
T PF00750_consen 82 KFGDEE-LLEEDPIKHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYIL----EWSKETLQ 156 (354)
T ss_dssp HHHHHH-TSHSSCHHHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHH----HHHHHHHH
T ss_pred hhhhhh-hcccccccchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHH----HHHHHHHH
Confidence 433221 11346788888888876654322 2348899999999999999999999988 54 45566899
Q ss_pred HcCCcee-ee--ccccccCcHHHHHHHHHHCCCEEEeCCeEEEEec--CCCCCeEEEecCCccccccccHHHHHHHHhhc
Q 014355 262 RLRVDLE-EK--GESFYNPYIPGVIDELSKQGLVEESQGARVIFIE--GVNIPLIIVKSDGGFNYASTDLAALWYRLNEE 336 (426)
Q Consensus 262 ~Lgi~fd-~~--~Es~~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~--g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~ 336 (426)
+|++.|| |+ +||++.+.+.+++++|+++|+++++|||+|++++ |+++|+||+||||++||+|||||||++|++.+
T Consensus 157 ~l~i~fDv~~~E~Es~~~~~v~~vl~~L~e~g~~~~~dGa~~i~~~~~g~~k~~Vl~ksDGt~~Y~trDiA~~~~r~~~~ 236 (354)
T PF00750_consen 157 RLYIRFDVWFDESESFYSGKVDEVLERLKEKGLLYESDGALWIDLTKFGDDKDRVLRKSDGTSTYLTRDIAYHLYRFEEY 236 (354)
T ss_dssp HTT---SEEEEHCHHHHTTHHHHHHHHHHCTTTEEEETTEEEEEGCCTSTSS-EEEEETTSEB-HHHHHHHHHHHHHCCS
T ss_pred HHHHHhCcCcccchhhhhhHHHHHHHHHHhCCcEEecCCcEEEechhcCCCCcceEEcCCCceEEEcchHHHHHHHHhhh
Confidence 9999995 55 6788999999999999999999999999999998 78899999999999999999999999999889
Q ss_pred CCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCc-cccccCCCceeHHHHHHHHHHHHHH
Q 014355 337 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTRFSEVVRLVDLLDEAKNRSKA 415 (426)
Q Consensus 337 ~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~-kmSkR~G~~v~L~dLlde~~~~a~~ 415 (426)
++|++|||+|++|++||+||++++++||+. +....+.|++||+|++++|+ |||||+|++|+|+|||+++.++|++
T Consensus 237 ~~d~~iyV~~~~q~~hf~~l~~~l~~lg~~----~~~~~~~H~~~g~vl~~~gk~~mstR~G~~i~l~dllde~~~~a~~ 312 (354)
T PF00750_consen 237 GFDKIIYVVGADQKGHFKQLFAILEALGYD----PEAVKLQHVSFGVVLLKDGKVKMSTRKGNVITLDDLLDEAVERALE 312 (354)
T ss_dssp S-SEEEEEEEGGGHHHHHHHHHHHHHTT-H----HHHCTEEEEEE-EEEETTBEESS-TTTTSSTBHHHHHHHHHHHHHH
T ss_pred ccccEEEEecCchhhHHHHHHHHHHHhCCC----CCCCEEEEEEEEEEEcCCCCccccCCCCCceEHHHHHHHHHHHHHH
Confidence 999999999999999999999999999984 23678999999999999997 9999999999999999999999999
Q ss_pred HHHHhc
Q 014355 416 VLIERG 421 (426)
Q Consensus 416 ~i~~~~ 421 (426)
+.+++
T Consensus 313 -~~~~~ 317 (354)
T PF00750_consen 313 -IMEKN 317 (354)
T ss_dssp -HHHHH
T ss_pred -HHhcc
Confidence 66654
No 8
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-67 Score=528.87 Aligned_cols=363 Identities=33% Similarity=0.480 Sum_probs=320.8
Q ss_pred ccccccc-CCCCccccchhhHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCceeeeEEecCcEEEEeeCHHHHHHHHHH
Q 014355 34 RPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQK 112 (426)
Q Consensus 34 ~~~~~~~-~~~~GD~~t~~a~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~i~~v~vagpGfiNf~l~~~~~~~~l~~ 112 (426)
.+..+.. +++-||.-.++. .++ ..|.+.|...+++++....|+++...|| |++|+|++..+.+.+..
T Consensus 25 ~~~le~~~~~~r~~~~~~lp-----~i~------~~~~~~a~~~~e~~~~~~~v~~~~~~~~-~~~f~ln~~~~~k~~l~ 92 (567)
T KOG1195|consen 25 PPALEQSNSMDRPDLLLPLP-----RIR------VQGKEDALRWAEALPCNRIVEEVGASGP-FVQFFLNRRRLIKSVLP 92 (567)
T ss_pred HHHHHhhccCCCCCccccCc-----ccc------cCCHHHHHHHHHhcccccchHHHhcCCC-eEEEEecHHHHHHHHHH
Confidence 3444544 456777755543 233 3445999999999998889999999997 99999999999888766
Q ss_pred HHHc-CCCCC-CccCCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHh
Q 014355 113 MLVD-GIETW-APKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFE 190 (426)
Q Consensus 113 ~l~~-~~~~~-~~~~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~ 190 (426)
.+.. .+.++ ...+.+++|+|||||||++||+|+||+|+++||..++|+.+..||+|++.||+||||+||++++.. +.
T Consensus 93 ~i~~~~~~~g~~~~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g-~~ 171 (567)
T KOG1195|consen 93 IIEEQREKYGKNELGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALG-FQ 171 (567)
T ss_pred HHHHHhcccCccccccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhcc-HH
Confidence 5544 44443 334779999999999999999999999999999999999999999999999999999999998753 35
Q ss_pred hCCCCCccccccHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-e
Q 014355 191 KFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-E 269 (426)
Q Consensus 191 ~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~ 269 (426)
++++++...-++|.+|.+.|+++++..+.+++..++|++.+.+||.||.+...+|++|++.+++.+.++|+||||+|| |
T Consensus 172 ~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD~y 251 (567)
T KOG1195|consen 172 LYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFDEY 251 (567)
T ss_pred hhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeeeec
Confidence 666655556689999999999999998888899999999999999999999999999999999999999999999996 7
Q ss_pred eccc-cccCcHHHHHHHHHHCCCEEEeCCeEEEEecCCCCC---eEEEecCCccccccccHHHHHHHHhhcCCCeEEEEe
Q 014355 270 KGES-FYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIP---LIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVT 345 (426)
Q Consensus 270 ~~Es-~~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~g~~~d---~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~ 345 (426)
.+|| .+.+.++++++.+++.|++.+.+|+.||++++.+++ .++.|||||++|.|||||++++|+..|.||++|||+
T Consensus 252 ~gESqv~~e~~~~~~d~~rs~~l~~e~dG~~vidL~~~~~~~~~~~V~ksdgttLYltRdiaaal~Rl~~y~fdr~iYVv 331 (567)
T KOG1195|consen 252 SGESQVSNEKMQEALDLLRSANLTEEIDGTIVIDLSKIDKKAGKAVVQKSDGTTLYLTRDIAAALDRLEKYSFDRLIYVV 331 (567)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCcccCCCcEEEEecccCcccceEEEEcCCCceehHHHHHHHHHHHHHhcCcceEEEEe
Confidence 8898 557889999999999998889999999999865543 578999999999999999999999999999999999
Q ss_pred eCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHHHHH
Q 014355 346 DVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 419 (426)
Q Consensus 346 g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~i~~ 419 (426)
+..|+.||.++|.+++++|+ +|+.+++||.||+|.+ ||||+|+++.|+|+++++.+.|++.|..
T Consensus 332 d~~Q~~hf~~lf~ilk~mg~-----~~a~~~qHV~~G~v~G-----msTRkG~~~fl~dil~e~re~m~e~M~s 395 (567)
T KOG1195|consen 332 DSQQKDHFCQLFEILKKMGF-----DWAKKLQHVNFGRVQG-----MSTRKGKVVFLDDILEEAREQMLEVMAS 395 (567)
T ss_pred chHHHHHHHHHHHHHHHhCc-----hhhhhcceeccccccc-----ccccCCceeeHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999 4788999999999996 9999999999999999999999999975
No 9
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=100.00 E-value=3.8e-57 Score=426.07 Aligned_cols=209 Identities=36% Similarity=0.539 Sum_probs=193.9
Q ss_pred eEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHH
Q 014355 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (426)
Q Consensus 129 kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (426)
+|+||||||||+||+||||+||+++||+|+|+|+++||+|+++||+||||.||++++...
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~-------------------- 60 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL-------------------- 60 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHH--------------------
Confidence 589999999999999999999999999999999999999999999999999999776321
Q ss_pred HHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eeccccccCcHHHHHHHHH
Q 014355 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDELS 287 (426)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~Es~~~~~v~~vi~~L~ 287 (426)
..|+++++.+.+.|.++|++|||+|| |.+||.+.+.+.++++.|+
T Consensus 61 ----------------------------------~~~~~~~~~~~~~~~~~~~~L~i~~d~~~~es~~~~~~~~~i~~L~ 106 (212)
T cd00671 61 ----------------------------------EKWRKLVEESIKADLETYGRLDVRFDVWFGESSYLGLMGKVVELLE 106 (212)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHhCCcCceecchhhhhhHHHHHHHHHH
Confidence 11889999999999999999999996 7788888888999999999
Q ss_pred HCCCEEEeCCeEEEEecC--CCCCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCC
Q 014355 288 KQGLVEESQGARVIFIEG--VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGW 365 (426)
Q Consensus 288 ~~g~~~~~dGa~~~~~~g--~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~ 365 (426)
++|++|+.+|++|++++. +.+|+||+||||+|||.|+|||||++|+. +++|++|||+|++|..||+++++++++||+
T Consensus 107 ~~g~~~~~~g~~~~~~~~~~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~-~~~~~~i~v~g~~~~~~~~~~~~~~~~lg~ 185 (212)
T cd00671 107 ELGLLYEEDGALWLDLTEFGDDKDRVLVRSDGTYTYFTRDIAYHLDKFE-RGADKIIYVVGADHHGHFKRLFAALELLGY 185 (212)
T ss_pred HCCCEEEeCCcEEEechhhCCCCCeEEEECCCCccchHHHHHHHHHHHh-cCCCEEEEEECCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999873 45799999999999999999999999995 899999999999999999999999999999
Q ss_pred CCCCCCCCCcEEEEEeEEEEcCCCccccccCC
Q 014355 366 LSADDSTYPKASHVGFGLVLGEDGKRLRTRFS 397 (426)
Q Consensus 366 ~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G 397 (426)
. ..+.+.|++||+|.+++|+|||||+|
T Consensus 186 ~-----~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 186 D-----EAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred C-----CCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 4 34689999999999988999999998
No 10
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.5e-28 Score=249.72 Aligned_cols=235 Identities=16% Similarity=0.174 Sum_probs=190.2
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
.+.+|.++.|+|+++...||||+|+.|..|+|.|+|+++||.|..+.+|+|. +|
T Consensus 19 ~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDI----------------------DD---- 72 (464)
T COG0215 19 DPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDI----------------------DD---- 72 (464)
T ss_pred CCCeEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccc----------------------cH----
Confidence 4445999999999999999999999999999999999999999999999994 34
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCce-eeecc-ccccCcHHHHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIPGVI 283 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-d~~~E-s~~~~~v~~vi 283 (426)
++.+++.+. |- .|+++++.+...|.++++.|||.- +.++. +.|.+.+.+++
T Consensus 73 --KIi~rA~~~--------------------g~-----~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I 125 (464)
T COG0215 73 --KIINRAREE--------------------GL-----SIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFI 125 (464)
T ss_pred --HHHHHHHHh--------------------CC-----CHHHHHHHHHHHHHHHHHHhCCCCCcccCcHhhCHHHHHHHH
Confidence 334433321 21 367888999999999999999974 66555 78888999999
Q ss_pred HHHHHCCCEEEe-CCeEEEEec---------C--------------------CCCCeEEEec--CCcccccccc----HH
Q 014355 284 DELSKQGLVEES-QGARVIFIE---------G--------------------VNIPLIIVKS--DGGFNYASTD----LA 327 (426)
Q Consensus 284 ~~L~~~g~~~~~-dGa~~~~~~---------g--------------------~~~d~Vl~ks--DG~~tY~t~D----iA 327 (426)
++|.++|++|+. +|.++|++. + +..||||||+ .|.|.|-+++ .+
T Consensus 126 ~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPG 205 (464)
T COG0215 126 EKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDSLEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPG 205 (464)
T ss_pred HHHHHCCceEEecCCcEEEecccchhhHhhcCCCChhHHhhccccccccccCCchhheeeccCCCCCCCCCCCCCCCCCc
Confidence 999999999997 789999874 0 1248999994 7999999998 78
Q ss_pred HHHHH--HhhcCCCeEEEEeeCCccccHHHH-HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHH
Q 014355 328 ALWYR--LNEEKAEWIIYVTDVGQQLHFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (426)
Q Consensus 328 ~~~~r--~~~~~~d~~i~V~g~~q~~hf~~~-~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~d 404 (426)
||+++ +...-+..-+||+|++.++-|||+ ++++++-...+ .++++..|.|. |+|. -+|+||||+.||++|+.|
T Consensus 206 WHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea~~g-~~~~a~yWmH~--G~l~-i~geKMSKSLGNfiti~d 281 (464)
T COG0215 206 WHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAATG-VKPFAKYWMHN--GFLN-IDGEKMSKSLGNFITVRD 281 (464)
T ss_pred hhHHHHHHHHHHhCCCcceecCcccccCCCcccHHHHHHhhhC-CCcceeEeEEc--ceee-ecCcCcccccCCeeEHHH
Confidence 89887 222234466799999999999998 68887654432 13678999999 6677 468899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014355 405 LLDEAKNRSKAVL 417 (426)
Q Consensus 405 Llde~~~~a~~~i 417 (426)
+|++....+....
T Consensus 282 ~l~~~~p~~lR~~ 294 (464)
T COG0215 282 LLKKYDPEVLRLF 294 (464)
T ss_pred HHhhcCHHHHHHH
Confidence 9998777766544
No 11
>PLN02946 cysteine-tRNA ligase
Probab=99.95 E-value=1.7e-27 Score=249.83 Aligned_cols=230 Identities=17% Similarity=0.101 Sum_probs=181.4
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
.+++|-++.|+|+|+++.||||+|+.|..|+|+|+|++.||+|..+..++|.|..|-.
T Consensus 77 ~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~---------------------- 134 (557)
T PLN02946 77 VEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIA---------------------- 134 (557)
T ss_pred CCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHH----------------------
Confidence 4678999999999999999999999999999999999999999999999997643322
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCce-eee-ccccccCcHHHHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEK-GESFYNPYIPGVI 283 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-d~~-~Es~~~~~v~~vi 283 (426)
++.+. | .-|+++++.+.+.|.+++++|||.. +.. ..+.|.+.+.+++
T Consensus 135 ------~A~~~--------------------g-----~~~~ela~~y~~~f~~d~~~LnI~~p~~~pratehi~~ii~~i 183 (557)
T PLN02946 135 ------RANEL--------------------G-----EDPISLSRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMI 183 (557)
T ss_pred ------HHHHc--------------------C-----CCHHHHHHHHHHHHHHHHHHCCCCCCCeecCcchhHHHHHHHH
Confidence 11110 1 1245678888899999999999985 333 3477888999999
Q ss_pred HHHHHCCCEEEeCCeEEEEec------------------C----------CCCCeEEEec--CCcccccccc----HHHH
Q 014355 284 DELSKQGLVEESQGARVIFIE------------------G----------VNIPLIIVKS--DGGFNYASTD----LAAL 329 (426)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~~~------------------g----------~~~d~Vl~ks--DG~~tY~t~D----iA~~ 329 (426)
++|.++|++|+.+|.+||++. | +..||+|||+ .|.|.|.+++ .+||
T Consensus 184 ~~Li~kG~aY~~~g~VYFdv~~f~~YG~Ls~~~l~~l~~g~rv~~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWH 263 (557)
T PLN02946 184 KQILDNGCAYRVDGDVYFSVDKFPEYGKLSGRKLEDNRAGERVAVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWH 263 (557)
T ss_pred HHHHHCCCEEEECCeEEEecCcchhhhhcCCCChhHhhcCCCCCcccccCCccccceeccCCCCCCCccCCCCCCCCcHH
Confidence 999999999999999999874 1 1137999994 6889999988 7888
Q ss_pred HHHH--hhcCCCeEEEEeeCCccccHHHH-HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHH
Q 014355 330 WYRL--NEEKAEWIIYVTDVGQQLHFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLL 406 (426)
Q Consensus 330 ~~r~--~~~~~d~~i~V~g~~q~~hf~~~-~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLl 406 (426)
+++- ...-+...+||+|++.++.|||+ .++++.-.... .+++..|.|. |+|. -+|+|||||.||+++++|++
T Consensus 264 IECSaMs~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g--~~~a~yW~H~--G~v~-~~G~KMSKSlGN~itl~dll 338 (557)
T PLN02946 264 IECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACC--DSNISYWIHN--GFVT-VDSEKMSKSLGNFFTIRQVI 338 (557)
T ss_pred HHHHHHHHHHcCCCeeEeccccccCCCcccchHHHHHHHhC--CCCCceeeEe--eEEE-eCCCCcCCcCCCcCCHHHHH
Confidence 8762 12223356799999999999998 45555432211 2567789997 7788 57899999999999999999
Q ss_pred HHHHHHH
Q 014355 407 DEAKNRS 413 (426)
Q Consensus 407 de~~~~a 413 (426)
++....+
T Consensus 339 ~~y~~da 345 (557)
T PLN02946 339 DLYHPLA 345 (557)
T ss_pred HhcCccc
Confidence 9755433
No 12
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.95 E-value=2.4e-27 Score=247.43 Aligned_cols=234 Identities=18% Similarity=0.177 Sum_probs=184.5
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
.+++|.+..|+|+|++++||||+|+.++.|+|+|.|+..||+|.....++|.|..+..-+
T Consensus 20 ~~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A-------------------- 79 (463)
T PRK00260 20 EPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRA-------------------- 79 (463)
T ss_pred CCCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHH--------------------
Confidence 456899999999999999999999999999999999999999999999999764433211
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCce-eeecc-ccccCcHHHHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIPGVI 283 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-d~~~E-s~~~~~v~~vi 283 (426)
. +.| ..|+++++.+.+.|.+++++|||.+ |++.. +.|.+.+.+++
T Consensus 80 --------~--------------------~~g-----~~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~~~i 126 (463)
T PRK00260 80 --------N--------------------EEG-----ESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIELI 126 (463)
T ss_pred --------H--------------------HcC-----CCHHHHHHHHHHHHHHHHHHcCCCCCCccccccccHHHHHHHH
Confidence 1 011 1367788889999999999999965 76654 67778899999
Q ss_pred HHHHHCCCEEEeCCeEEEEec------------------C----------CCCCeEEEec--CCcccccccc----HHHH
Q 014355 284 DELSKQGLVEESQGARVIFIE------------------G----------VNIPLIIVKS--DGGFNYASTD----LAAL 329 (426)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~~~------------------g----------~~~d~Vl~ks--DG~~tY~t~D----iA~~ 329 (426)
++|.++|++|+.+|.++|+++ | +..||+|||+ .|.+.|.++. ++||
T Consensus 127 ~~L~~kG~aY~~~~~Vyfdv~~~~~yg~ls~~~~~~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWh 206 (463)
T PRK00260 127 ERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLDELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWH 206 (463)
T ss_pred HHHHHCCCEEEecCeEEEecccccccccCCCCCHHHHhccCcCCcccCCCCccccceecCCCCCCCCCCCCCCCCCCChh
Confidence 999999999999999999874 1 0147999996 6888888775 5677
Q ss_pred HHH--HhhcCCCeEEEEeeCCccccHHHH-HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHH
Q 014355 330 WYR--LNEEKAEWIIYVTDVGQQLHFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLL 406 (426)
Q Consensus 330 ~~r--~~~~~~d~~i~V~g~~q~~hf~~~-~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLl 406 (426)
+++ +...-+..-++|++++.++.|+|+ +.+++...+.+ .+++..|.|. |+|. .+|+|||||.||+|+++|++
T Consensus 207 iecsam~~~~lg~~~Dih~gG~DlifpHh~neiaqs~a~~g--~p~~~~w~H~--g~v~-~~G~KMSKS~GN~i~~~dll 281 (463)
T PRK00260 207 IECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQSEAATG--KPFANYWMHN--GFVT-VNGEKMSKSLGNFFTIRDLL 281 (463)
T ss_pred HHHHHHHHHhcCCCcceecCccccCCCchHhHHHHHHHhcC--CCcceEEEEc--cEEc-cCCCcccCcCCCCCCHHHHH
Confidence 765 111223356789999999999998 56666332221 2677889998 6676 67899999999999999999
Q ss_pred HHHHHHHHHHH
Q 014355 407 DEAKNRSKAVL 417 (426)
Q Consensus 407 de~~~~a~~~i 417 (426)
++....+....
T Consensus 282 ~~~~~d~lR~~ 292 (463)
T PRK00260 282 KKYDPEVLRFF 292 (463)
T ss_pred HHcCchHhHHH
Confidence 99877766554
No 13
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.95 E-value=2.5e-27 Score=230.16 Aligned_cols=235 Identities=19% Similarity=0.186 Sum_probs=165.7
Q ss_pred CCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHH
Q 014355 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (426)
Q Consensus 125 ~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (426)
..+++|-++.|+|+|+...||||+|+.|..|+|.|+|++.||+|..+..|.|. +|
T Consensus 4 ~~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDi----------------------DD--- 58 (300)
T PF01406_consen 4 LNPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDI----------------------DD--- 58 (300)
T ss_dssp SCTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-S----------------------SH---
T ss_pred CCCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEecccc----------------------ch---
Confidence 46789999999999999999999999999999999999999999999999995 23
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCce-eeec-cccccCcHHHH
Q 014355 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKG-ESFYNPYIPGV 282 (426)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-d~~~-Es~~~~~v~~v 282 (426)
++++++.+. | .-|+++++.+.+.|.+++++|||.- +.+. -|.+.+.+.++
T Consensus 59 ---Kii~~A~~~--------------------g-----~~~~ela~~y~~~f~~dm~~Lnv~~p~~~prate~i~~ii~~ 110 (300)
T PF01406_consen 59 ---KIIKRAREE--------------------G-----VSPQELARRYEEEFFEDMKALNVLPPDHYPRATEHIPEIIEL 110 (300)
T ss_dssp ---HHHHHHHHT--------------------T-----S-HHHHHHHHHHHHHHHHHHTT----SEEEEGGGGHHHHHHH
T ss_pred ---HHHHHHHhc--------------------c-----CCHHHHHHHHHHHHHHHHHHcCCCCCccccchhccHHHHHHH
Confidence 333333321 1 1267788888999999999999997 5444 37777889999
Q ss_pred HHHHHHCCCEEEeC-CeEEEEec-----C-----------------------CCCCeEEEec--CCcccccccc----HH
Q 014355 283 IDELSKQGLVEESQ-GARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYASTD----LA 327 (426)
Q Consensus 283 i~~L~~~g~~~~~d-Ga~~~~~~-----g-----------------------~~~d~Vl~ks--DG~~tY~t~D----iA 327 (426)
++.|.++|++|+.+ |.++|+++ | +..|++|||+ .|.+.|.|+. .+
T Consensus 111 i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~Ls~~~~~~l~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPG 190 (300)
T PF01406_consen 111 IEKLIDKGHAYESEDGSVYFDVSKFPDYGKLSNQDLEDLEAGARVEVDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPG 190 (300)
T ss_dssp HHHHHHTTSEEEETTSEEEE-CCGSTTTTTTTT-SHHHHHHCHHHTT-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-
T ss_pred HHHHHHCCCeEEcCCCcEEEeeccccccccccccchhhHHhhhhcccccccCCCcceeeeecccccCCcccCCCccCcCc
Confidence 99999999999988 99999974 1 1248999985 5778888877 66
Q ss_pred HHHHHH--hhcCCCeEEEEeeCCccccHHHH-HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHH
Q 014355 328 ALWYRL--NEEKAEWIIYVTDVGQQLHFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (426)
Q Consensus 328 ~~~~r~--~~~~~d~~i~V~g~~q~~hf~~~-~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~d 404 (426)
||+++. ...-+..-|||+|++.++-||++ .+++++-.+.+ .+++..|.|. |+|.. +|+||||+.||++|++|
T Consensus 191 WHiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g--~~~a~~W~H~--g~l~~-~g~KMSKSlgN~~~i~d 265 (300)
T PF01406_consen 191 WHIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATG--KPFANYWMHN--GHLNV-DGEKMSKSLGNFITIRD 265 (300)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHS--S-SEEEEEEE----EEE-TTCE--TTTT---BHHH
T ss_pred eeeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhhC--chHHHHHHHH--HHHhh-cCccccccCCCEEEHHH
Confidence 777652 11112245899999999999998 46665432211 2688999999 66875 68899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014355 405 LLDEAKNRSKAVL 417 (426)
Q Consensus 405 Llde~~~~a~~~i 417 (426)
+++.....+.+.+
T Consensus 266 ll~~~~~~~lR~~ 278 (300)
T PF01406_consen 266 LLKKYSPDALRLF 278 (300)
T ss_dssp HHTTS-HHHHHHH
T ss_pred HhhcCCHHHHHHH
Confidence 9998777776654
No 14
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.95 E-value=6.1e-27 Score=243.28 Aligned_cols=242 Identities=14% Similarity=0.080 Sum_probs=183.3
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
.+++|-++.|+|+|+++.||||+|+.|..|+|+|+|++.||+|..+..|.|.|...+- ...+++.|
T Consensus 20 ~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~------------~De~ddKi-- 85 (490)
T PRK14536 20 EHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDD------------ADSGEDKM-- 85 (490)
T ss_pred CCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccC------------CcCCChHH--
Confidence 4568999999999999999999999999999999999999999999999999854430 11133332
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCce-eeecc-ccccCcHHHHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIPGVI 283 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-d~~~E-s~~~~~v~~vi 283 (426)
..++. ++|- -++++++.+.+.|.+++++|||.+ +++.. +.|.+.+.+++
T Consensus 86 ----i~~A~--------------------~~g~-----~~~e~a~~~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii~~i 136 (490)
T PRK14536 86 ----VKSAQ--------------------EHGK-----SVLEIAAHYTAAFFRDTARLNIERPSIVCNATEHIQDMIALI 136 (490)
T ss_pred ----HHHHH--------------------HcCC-----CHHHHHHHHHHHHHHHHHHcCCCCCceecCcccHHHHHHHHH
Confidence 22221 1121 246788888999999999999998 55543 67788899999
Q ss_pred HHHHHCCCEEEeCCeEEEEec------------------C----------CCCCeEEEec----CC-cccccccc----H
Q 014355 284 DELSKQGLVEESQGARVIFIE------------------G----------VNIPLIIVKS----DG-GFNYASTD----L 326 (426)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~~~------------------g----------~~~d~Vl~ks----DG-~~tY~t~D----i 326 (426)
++|.++|++|+.+|.+||++. | +..||+|||. .| .++|.+++ .
T Consensus 137 ~~L~~kG~aY~~~~~vyFdv~~~~~YG~Ls~~~~~~l~~g~~v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRP 216 (490)
T PRK14536 137 KRLEARGHTYCAGGNVYFDIRTFPSYGSLASAAVEDLQAGARIEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYP 216 (490)
T ss_pred HHHHHCCCEEEECCeEEEeCCcccchhhhcCCCHHHhhcCCcCCCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCC
Confidence 999999999999999999873 1 1147999874 23 47888877 5
Q ss_pred HHHHHHHh--hcCCCeEEEEeeCCccccHHHH-HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHH
Q 014355 327 AALWYRLN--EEKAEWIIYVTDVGQQLHFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 403 (426)
Q Consensus 327 A~~~~r~~--~~~~d~~i~V~g~~q~~hf~~~-~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~ 403 (426)
+||+.+.. ..-+..-+||+|.+.++.|+|+ ..+++..++.. .+++..|.|. |++. .+|+|||||.||+++++
T Consensus 217 GWHIECsaMs~~~lg~~~DIH~GG~DliFPHHeneiAqs~a~~g--~~~~~~w~h~--g~l~-~~g~KMSKSlGN~itl~ 291 (490)
T PRK14536 217 GWHIECSAMSMKYLGEQCDIHIGGVDHIRVHHTNEIAQCEAATG--KPWVRYWLHH--EFLL-MNKGKMSKSAGQFLTLS 291 (490)
T ss_pred ChHHHHHHHHHHHcCCceeEEeccccCCCcchhhHHHHHHHhcC--CCcceEEEEc--CEEe-ecCccccccCCCcccHH
Confidence 67776621 1112234699999999999998 57776554422 2678899998 5566 46789999999999999
Q ss_pred HHHHH-HHHHHHH
Q 014355 404 DLLDE-AKNRSKA 415 (426)
Q Consensus 404 dLlde-~~~~a~~ 415 (426)
||+++ ....|..
T Consensus 292 dll~~g~~~~alR 304 (490)
T PRK14536 292 SLQEKGFQPLDYR 304 (490)
T ss_pred HHHhcCCCHHHHH
Confidence 99997 4444443
No 15
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.95 E-value=8.9e-27 Score=241.00 Aligned_cols=233 Identities=16% Similarity=0.125 Sum_probs=182.2
Q ss_pred ceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHH
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (426)
++|-++.|+|+|+.+.||||+|+.|..|+|+|.|+..||+|..+..|.|.|...+. ...+++.|
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~------------~D~gddKI---- 83 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGD------------FDDGEDKV---- 83 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCC------------ccCCCcHH----
Confidence 58999999999999999999999999999999999999999999999999865441 11133433
Q ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eec-cccccCcHHHHHHH
Q 014355 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKG-ESFYNPYIPGVIDE 285 (426)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~-Es~~~~~v~~vi~~ 285 (426)
..++.+ +|- -|+++++.+.+.|.+++++|||.++ +.+ .+.|.+.+.++++.
T Consensus 84 --i~~A~~--------------------~g~-----~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~atehi~~~i~~i~~ 136 (481)
T PRK14534 84 --VKAARE--------------------RGL-----TVYEISRFFTEAFFDDCKKLNIVYPDKVLVASEYIPIMIEVVKV 136 (481)
T ss_pred --HHHHHH--------------------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCceecCccchHHHHHHHHHH
Confidence 222221 121 2467888889999999999999984 444 36777889999999
Q ss_pred HHHCCCEEEeCCeEEEEec--------------------C----------CCCCeEEEe-----cCCcccccccc----H
Q 014355 286 LSKQGLVEESQGARVIFIE--------------------G----------VNIPLIIVK-----SDGGFNYASTD----L 326 (426)
Q Consensus 286 L~~~g~~~~~dGa~~~~~~--------------------g----------~~~d~Vl~k-----sDG~~tY~t~D----i 326 (426)
|.++|++|+.+|.+||+++ | +..|++|+| ++|.++|.+++ +
T Consensus 137 L~~kG~aY~~~~~vyFdv~~~~~YG~ls~~~l~~l~~~~~~~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrP 216 (481)
T PRK14534 137 LEENGFTYFVNGNVYFDTSCFKSYGQMAGINLNDFKDMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYP 216 (481)
T ss_pred HHHCCCEEEECCeEEEecccccchhhhcCCCHHHHhhhccCcCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCC
Confidence 9999999999999999864 0 114799998 47889999987 7
Q ss_pred HHHHHHH--hhcCCCeEEEEeeCCccccHHHH-HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHH
Q 014355 327 AALWYRL--NEEKAEWIIYVTDVGQQLHFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 403 (426)
Q Consensus 327 A~~~~r~--~~~~~d~~i~V~g~~q~~hf~~~-~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~ 403 (426)
+||+.+- ....+...+||+|.+.++.|+|+ ..+++..+..+ .+++..|.|. |++.. +|+|||||.||+++++
T Consensus 217 gWHiECsam~~~~lg~~~DIH~GG~DliFPHHene~Aqs~a~~g--~~~~~~W~H~--g~l~~-~g~KMSKSlGN~i~l~ 291 (481)
T PRK14534 217 SWHLECAAMNLEYFKSTLDIHLGGVDHIGVHHINEIAIAECYLN--KKWCDMFVHG--EFLIM-EYEKMSKSNNNFITIK 291 (481)
T ss_pred cHHHHHHHHHHHHcCCcceEEecccccCCCcchhHHHHHhhhcC--CCcceEEEEe--cEEEe-cCceecccCCCcccHH
Confidence 7887762 11122356799999999999988 56776554432 2677899999 55764 5789999999999999
Q ss_pred HHHHH
Q 014355 404 DLLDE 408 (426)
Q Consensus 404 dLlde 408 (426)
||+++
T Consensus 292 dll~~ 296 (481)
T PRK14534 292 DLEDQ 296 (481)
T ss_pred HHHhc
Confidence 99986
No 16
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.95 E-value=2.2e-26 Score=239.94 Aligned_cols=234 Identities=18% Similarity=0.172 Sum_probs=182.2
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
.+++|.+..|+|.|++++||||+|+.+..|+++|.|+..||+|.....++|.|..+-.-+
T Consensus 18 ~~~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A-------------------- 77 (465)
T TIGR00435 18 VQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRA-------------------- 77 (465)
T ss_pred CCCcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHH--------------------
Confidence 456899999999999999999999999999999999999999999999999865443211
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceee-e-ccccccCcHHHHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-K-GESFYNPYIPGVI 283 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~-~-~Es~~~~~v~~vi 283 (426)
.+ +|- -++++++.+.+.|.++|++|||.++. . ..+.|.+.+.+++
T Consensus 78 --------~~--------------------~g~-----~~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT~hi~~i~~~i 124 (465)
T TIGR00435 78 --------RE--------------------NGE-----SVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEIIEFI 124 (465)
T ss_pred --------HH--------------------cCC-----CHHHHHHHHHHHHHHHHHHhCCCCCcCCccccccHHHHHHHH
Confidence 10 010 12457888889999999999999953 3 4578888999999
Q ss_pred HHHHHCCCEEEeC-CeEEEEec------------------C----------CCCCeEEEec--CCcccccccc----HHH
Q 014355 284 DELSKQGLVEESQ-GARVIFIE------------------G----------VNIPLIIVKS--DGGFNYASTD----LAA 328 (426)
Q Consensus 284 ~~L~~~g~~~~~d-Ga~~~~~~------------------g----------~~~d~Vl~ks--DG~~tY~t~D----iA~ 328 (426)
++|.++|++|+.+ |++||++. | +..|++|||+ .|.+.|.+++ .+|
T Consensus 125 ~~L~ekG~aY~~~~g~vyfdv~~~~~yG~ls~~~~~~~~~~~~~~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgW 204 (465)
T TIGR00435 125 EQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLDQLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGW 204 (465)
T ss_pred HHHHHCCCEEEecCCcEEEeccccchhccCCCCCHHHHhcccccCcccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCc
Confidence 9999999999998 99999863 1 1148999984 6788888865 556
Q ss_pred HHHHH--hhcCCCeEEEEeeCCccccHHHH-HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHH
Q 014355 329 LWYRL--NEEKAEWIIYVTDVGQQLHFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDL 405 (426)
Q Consensus 329 ~~~r~--~~~~~d~~i~V~g~~q~~hf~~~-~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dL 405 (426)
|+.+- ...-+..-++|++.+.++.|+++ ..+++...+.+ .+++..|.|. |+|. .+|+|||||+||+|+++|+
T Consensus 205 hiecsam~~~~lg~~~Dih~gG~Dl~fpHhene~aqs~a~~g--~~~~~~~~h~--g~v~-~~g~KMSKS~GN~i~~~dl 279 (465)
T TIGR00435 205 HIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQSEAAFG--KQLAKYWMHN--GFLM-IDNEKMSKSLGNFFTVRDV 279 (465)
T ss_pred HhHHHHHHHHhcCCCceeeccccccccchHHHHHHHHHHhcC--CCCCcEEEEe--eEEE-ecCccccccCCCcCCHHHH
Confidence 66541 11123345689999999999998 45555433222 2567789996 7787 5788999999999999999
Q ss_pred HHHHHHHHHHHH
Q 014355 406 LDEAKNRSKAVL 417 (426)
Q Consensus 406 lde~~~~a~~~i 417 (426)
+++....|....
T Consensus 280 l~~~~~dalR~~ 291 (465)
T TIGR00435 280 LKNYDPEILRYF 291 (465)
T ss_pred HHHCCHHHHHHH
Confidence 999887777654
No 17
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.94 E-value=5.7e-26 Score=229.79 Aligned_cols=227 Identities=16% Similarity=0.136 Sum_probs=176.0
Q ss_pred CCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHH
Q 014355 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (426)
Q Consensus 125 ~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (426)
..+++|-+..|+|+|+++.||||+|+++..|+|+|.||.+||+|..+..++|.|..|..-+.
T Consensus 5 ~~~~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~------------------ 66 (384)
T PRK12418 5 APGGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAA------------------ 66 (384)
T ss_pred CCCCeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHH------------------
Confidence 34558999999999999999999999999999999999999999999999998755442221
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCc-eeee-ccccccCcHHHH
Q 014355 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVD-LEEK-GESFYNPYIPGV 282 (426)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~-fd~~-~Es~~~~~v~~v 282 (426)
+. |- -++++++.+.+.|.+++++|||. ++.+ .-|.+.+.+.++
T Consensus 67 ----------~~--------------------G~-----~~~e~a~~~~~~f~~d~~~Lni~~~~~~~raTe~i~~~~~~ 111 (384)
T PRK12418 67 ----------RD--------------------GV-----DWRDLAEREIALFREDMEALRVLPPRDYVGAVESIPEVVEL 111 (384)
T ss_pred ----------Hc--------------------CC-----CHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCCHHHHHHH
Confidence 10 10 13467788888999999999984 5533 335667889999
Q ss_pred HHHHHHCCCEEEeCC----eEEEEec-----C-------------------C--C------CCeEEEec--CCccccccc
Q 014355 283 IDELSKQGLVEESQG----ARVIFIE-----G-------------------V--N------IPLIIVKS--DGGFNYAST 324 (426)
Q Consensus 283 i~~L~~~g~~~~~dG----a~~~~~~-----g-------------------~--~------~d~Vl~ks--DG~~tY~t~ 324 (426)
+++|.++|++|+.+| .+||++. | + + .||+|||+ .|.+.|.|+
T Consensus 112 i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~~~~w~sp 191 (384)
T PRK12418 112 VEKLLASGAAYVVDDEEYPDVYFSVDATPQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAARPGEPSWPSP 191 (384)
T ss_pred HHHHHHCCCEEEeCCCCCccEEEecCchhhcccccCCCHHHHHhhhcccccCcccccCCCcccceeeccCCCCCCcccCC
Confidence 999999999999888 8999863 1 0 1 37899995 677899998
Q ss_pred c----HHHHHHH--HhhcCCCeEEEEeeCCccccHHHH-HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCC
Q 014355 325 D----LAALWYR--LNEEKAEWIIYVTDVGQQLHFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFS 397 (426)
Q Consensus 325 D----iA~~~~r--~~~~~~d~~i~V~g~~q~~hf~~~-~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G 397 (426)
+ .+||+++ +...-+..-+||++++.++-|+++ +.+++...+..+ .+++..|.|. |++. .+|+||||+.|
T Consensus 192 wG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHeneiaq~~a~~g~-~~~~~~w~H~--g~l~-~~G~KMSKSlG 267 (384)
T PRK12418 192 FGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGE-RRFARHYVHA--GMIG-LDGEKMSKSRG 267 (384)
T ss_pred CCCCCChhHHHHHHHHHHHcCCCcccccCccccccchhHhHHHHHHHhcCC-CCcceEEEEC--CEEC-CCCCcccCcCC
Confidence 7 7788776 111223356789999999999998 566664433211 2688899997 4455 68999999999
Q ss_pred CceeHHHHHHH
Q 014355 398 EVVRLVDLLDE 408 (426)
Q Consensus 398 ~~v~L~dLlde 408 (426)
|++++.|+++.
T Consensus 268 N~i~~~ell~~ 278 (384)
T PRK12418 268 NLVFVSRLRAA 278 (384)
T ss_pred CcCCHHHHHhc
Confidence 99999998754
No 18
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.94 E-value=4.9e-26 Score=240.62 Aligned_cols=236 Identities=15% Similarity=0.148 Sum_probs=184.5
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
.+++|-++.|+|+|+.+.||||+|+.|..|+|+|.|+..||+|..+..++|.|-.|-.
T Consensus 245 ~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~---------------------- 302 (699)
T PRK14535 245 DPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIA---------------------- 302 (699)
T ss_pred CCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHH----------------------
Confidence 4678999999999999999999999999999999999999999999999997644332
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCce-eee-ccccccCcHHHHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEK-GESFYNPYIPGVI 283 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-d~~-~Es~~~~~v~~vi 283 (426)
++.+. | .-|+++++.+.+.|.+++++|||.+ ++. ..+.|.+.+.+++
T Consensus 303 ------~A~e~--------------------G-----~sp~ela~~y~~~F~~d~~~LnI~~p~~~praTeHI~~ii~lI 351 (699)
T PRK14535 303 ------RAAEN--------------------G-----ETIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIAMI 351 (699)
T ss_pred ------HHHHc--------------------C-----CCHHHHHHHHHHHHHHHHHHcCCCCCcEeeCccchHHHHHHHH
Confidence 11110 1 1145677888899999999999998 443 3477788899999
Q ss_pred HHHHHCCCEEEe-CCeEEEEec------------------C----------CCCCeEEEec--CCcccccccc----HHH
Q 014355 284 DELSKQGLVEES-QGARVIFIE------------------G----------VNIPLIIVKS--DGGFNYASTD----LAA 328 (426)
Q Consensus 284 ~~L~~~g~~~~~-dGa~~~~~~------------------g----------~~~d~Vl~ks--DG~~tY~t~D----iA~ 328 (426)
+.|.++|++|+. +|.+||+++ | +..||+|||+ .|.|.|.+++ .+|
T Consensus 352 ~~LidkG~AYe~~~gsVYFdV~~f~~YG~LS~~~~~~l~~g~rve~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGW 431 (699)
T PRK14535 352 ETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGW 431 (699)
T ss_pred HHHHHCCCEEEeCCCCEEEecccccccccccCCChHHhcCCCccccccccCCccccceeccCCCCCCCccCCCCCCCCch
Confidence 999999999986 688999874 1 1148999994 6888899987 778
Q ss_pred HHHHH--hhcCCCeEEEEeeCCccccHHHH-HHHHHHcCCCCC---C-----------CCCCCcEEEEEeEEEEcCCCcc
Q 014355 329 LWYRL--NEEKAEWIIYVTDVGQQLHFDMV-FSAAKRAGWLSA---D-----------DSTYPKASHVGFGLVLGEDGKR 391 (426)
Q Consensus 329 ~~~r~--~~~~~d~~i~V~g~~q~~hf~~~-~~~~~~lg~~~~---~-----------~~~~~~~~Hv~~g~v~~~~g~k 391 (426)
|+++- ...-+..-+||+|++.++.|||+ .++++.-..... + .+++..|.|. |+|. .+|+|
T Consensus 432 HIECSAMs~~~LG~~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHn--G~V~-vdGeK 508 (699)
T PRK14535 432 HIECSAMSENLFGDTFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHN--GFIR-VDGEK 508 (699)
T ss_pred HHHHHHHHHHHcCCcceeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEEC--CeEe-eCCCc
Confidence 88762 12223356799999999999998 466654222111 0 1477889999 6687 57899
Q ss_pred ccccCCCceeHHHHHHHHHHHHHHHH
Q 014355 392 LRTRFSEVVRLVDLLDEAKNRSKAVL 417 (426)
Q Consensus 392 mSkR~G~~v~L~dLlde~~~~a~~~i 417 (426)
|||+.||++++.|++++....+....
T Consensus 509 MSKSLGN~it~~dlLe~ygpdalRl~ 534 (699)
T PRK14535 509 MSKSLGNFFTIREVLKQYDPEVVRFF 534 (699)
T ss_pred cCCCCCCcCCHHHHHHhCCHHHHHHH
Confidence 99999999999999999887777654
No 19
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.94 E-value=1.1e-25 Score=228.97 Aligned_cols=225 Identities=17% Similarity=0.146 Sum_probs=176.2
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHH
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (426)
+++|-+..|+|.|++++||||+|++|..|+|+|+|+..||+|..+..++|.|..|..-+
T Consensus 34 ~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A--------------------- 92 (411)
T TIGR03447 34 GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERA--------------------- 92 (411)
T ss_pred CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHH---------------------
Confidence 56899999999999999999999999999999999999999999999999875544222
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCc-ee-eeccccccCcHHHHHH
Q 014355 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVD-LE-EKGESFYNPYIPGVID 284 (426)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~-fd-~~~Es~~~~~v~~vi~ 284 (426)
.+. | .-++++++.+...|.+++++|||. ++ +..-+.+.+.+.++++
T Consensus 93 -------~~~--------------------g-----~t~~ela~~y~~~f~~d~~~Lni~~~d~~~RaTe~i~~ii~~i~ 140 (411)
T TIGR03447 93 -------ERD--------------------G-----VDWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVIEMVE 140 (411)
T ss_pred -------HHc--------------------C-----CCHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCHHHHHHHHH
Confidence 110 1 013457777888999999999987 44 4334566788999999
Q ss_pred HHHHCCCEEEeCC----eEEEEec-----C---------------------CC------CCeEEEe--cCCcccccccc-
Q 014355 285 ELSKQGLVEESQG----ARVIFIE-----G---------------------VN------IPLIIVK--SDGGFNYASTD- 325 (426)
Q Consensus 285 ~L~~~g~~~~~dG----a~~~~~~-----g---------------------~~------~d~Vl~k--sDG~~tY~t~D- 325 (426)
+|.++|++|+.+| .+||++. | ++ .||+||| +.|.+.|.|++
T Consensus 141 ~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~Ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG 220 (411)
T TIGR03447 141 KLLAAGAAYEVEGPEYPDVYFSIEATEQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFG 220 (411)
T ss_pred HHHHCCCEEecCCCCcCcEEEeccchhccccccCCCHHHHHhhhcccccCcccccCCCCcccceeCCCCCCCCCccCCCC
Confidence 9999999998887 7999863 1 01 3789999 46788898887
Q ss_pred ---HHHHHHH--HhhcCCCeEEEEeeCCccccHHHH-HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCc
Q 014355 326 ---LAALWYR--LNEEKAEWIIYVTDVGQQLHFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 399 (426)
Q Consensus 326 ---iA~~~~r--~~~~~~d~~i~V~g~~q~~hf~~~-~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~ 399 (426)
.+||+++ +...-+...+||++++.++.|+++ +.+++.....++ .+++..|.|. |+|. .+|+||||+.||+
T Consensus 221 ~GRPGWHiECsam~~~~lg~~~Dih~GG~DLifpHheneiaq~~A~~g~-~~~~~~w~H~--g~l~-~~G~KMSKSlGN~ 296 (411)
T TIGR03447 221 PGRPGWHIECSAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAATGV-RRMARHYVHA--GMIG-LDGEKMSKSLGNL 296 (411)
T ss_pred CCCChhHHHHHHHHHHHcCCceecccCcccccccchHhHHHHHHHhcCC-CCcceEEEEC--CEEC-cCCCCccCcCCCC
Confidence 6788776 112223356799999999999998 577765443221 2688899998 5576 5789999999999
Q ss_pred eeHHHHHHH
Q 014355 400 VRLVDLLDE 408 (426)
Q Consensus 400 v~L~dLlde 408 (426)
++++|+++.
T Consensus 297 i~~~dl~~~ 305 (411)
T TIGR03447 297 VFVSKLRAA 305 (411)
T ss_pred CCHHHHHhc
Confidence 999999764
No 20
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.93 E-value=4.6e-25 Score=237.36 Aligned_cols=234 Identities=18% Similarity=0.205 Sum_probs=183.4
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHH-HCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLE-FSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~-~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (426)
.+.+|.++.|+|.++++.||||+|++|..|+|+|+|+ +.||+|..+..++|.|--|
T Consensus 57 ~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKI----------------------- 113 (651)
T PTZ00399 57 NGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKI----------------------- 113 (651)
T ss_pred CCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHH-----------------------
Confidence 5678999999999999999999999999999999999 9999999999999975222
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCce-eeecc-ccccCcHHHH
Q 014355 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIPGV 282 (426)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-d~~~E-s~~~~~v~~v 282 (426)
..++.+. | +..|+++++.+...|.+++++|||.. ++... +.|.+.|.++
T Consensus 114 -----i~~A~~~--------------------g----~~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~tehi~~ii~~ 164 (651)
T PTZ00399 114 -----IKRAREE--------------------K----LSIFLELARKWEKEFFEDMKALNVRPPDVITRVSEYVPEIVDF 164 (651)
T ss_pred -----HHHHHHh--------------------C----CCcHHHHHHHHHHHHHHHHHHcCCCCCccccCcCccHHHHHHH
Confidence 2222211 1 01256678888899999999999998 55443 7788889999
Q ss_pred HHHHHHCCCEEEeCCeEEEEecC-------------------------C------------CCCeEEEec--CCcccccc
Q 014355 283 IDELSKQGLVEESQGARVIFIEG-------------------------V------------NIPLIIVKS--DGGFNYAS 323 (426)
Q Consensus 283 i~~L~~~g~~~~~dGa~~~~~~g-------------------------~------------~~d~Vl~ks--DG~~tY~t 323 (426)
++.|.++|++|+.+|.+||+++. . ..||+|||. .|.|.|.|
T Consensus 165 i~~Li~~G~aY~~~gsvyFd~~~f~~~~~~Yg~L~p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~kpgep~W~S 244 (651)
T PTZ00399 165 IQKIIDNGFAYESNGSVYFDVEAFRKAGHVYPKLEPESVADEDRIAEGEGALGKVSGEKRSPNDFALWKASKPGEPSWDS 244 (651)
T ss_pred HHHHHHCCCEEEECCeEEEEchhcccchhhHHhhChhhcCCHHHHhcccCCccccCcCCCCCccHHhhCCCCCCCCCCCC
Confidence 99999999999999999998631 0 125778874 57888888
Q ss_pred cc----HHHHHHHH----hhcCCCeEEEEeeCCccccHHHH-HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccc
Q 014355 324 TD----LAALWYRL----NEEKAEWIIYVTDVGQQLHFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRT 394 (426)
Q Consensus 324 ~D----iA~~~~r~----~~~~~d~~i~V~g~~q~~hf~~~-~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSk 394 (426)
++ .+||+.+. ...|+ -++|++++.++.|||+ .++++.-.+.+. .+|+..|.|.+| |.. +|.||||
T Consensus 245 pwG~GrPGWHiECsam~~~~lg~--~~DIh~gG~DL~FPHHeNEiAQseA~~~~-~~~v~y~~H~G~--L~i-~G~KMSK 318 (651)
T PTZ00399 245 PWGKGRPGWHIECSAMASNILGD--PIDIHSGGIDLKFPHHDNELAQSEAYFDK-HQWVNYFLHSGH--LHI-KGLKMSK 318 (651)
T ss_pred CCCCCCCCchHHHHHHHHHHcCC--cceeeccCCCCCCCcchhHHHHHHHhhCC-CCCCcEEEEEEE--EEe-ccchhhh
Confidence 76 55666541 12343 6789999999999998 677776544322 367889999955 664 6889999
Q ss_pred cCCCceeHHHHHHHHHHHHHHHH
Q 014355 395 RFSEVVRLVDLLDEAKNRSKAVL 417 (426)
Q Consensus 395 R~G~~v~L~dLlde~~~~a~~~i 417 (426)
|.||+|+++|+|++...++....
T Consensus 319 SLGNfItp~dlLekygaDaLR~~ 341 (651)
T PTZ00399 319 SLKNFITIRQALSKYTARQIRLL 341 (651)
T ss_pred cCCCcccHHHHHHHcChHHHHHH
Confidence 99999999999999888877664
No 21
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.89 E-value=9.6e-22 Score=195.70 Aligned_cols=241 Identities=16% Similarity=0.112 Sum_probs=167.8
Q ss_pred eEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHH
Q 014355 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (426)
Q Consensus 129 kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (426)
|.+|....|||+|++||||+|+.++.|+++|.++..||+|.....++|.|..+...++.. ...
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~----~~~------------- 63 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK----GGR------------- 63 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHh----cCc-------------
Confidence 467888999999999999999999999999999999999999999999998776544211 000
Q ss_pred HHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec-----cccccCcHHHHH
Q 014355 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPGVI 283 (426)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~-----Es~~~~~v~~vi 283 (426)
.....+ + .+..+.++++++.+.+.|++++++|||.+||.. +..|.+.+.+++
T Consensus 64 -------~~~~~~------~----------~~~~~~~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f 120 (312)
T cd00668 64 -------KKKTIW------I----------EEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIF 120 (312)
T ss_pred -------cccccc------H----------HHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHH
Confidence 000111 0 011235567888899999999999999998431 234567899999
Q ss_pred HHHHHCCCEEE------eCCeEEEEec------------C----------------CCCCeEEEecC--Ccc-----ccc
Q 014355 284 DELSKQGLVEE------SQGARVIFIE------------G----------------VNIPLIIVKSD--GGF-----NYA 322 (426)
Q Consensus 284 ~~L~~~g~~~~------~dGa~~~~~~------------g----------------~~~d~Vl~ksD--G~~-----tY~ 322 (426)
++|.++|++|+ .+..++++++ + +..|..|.|.- |.+ +|.
T Consensus 121 ~~L~~~G~iY~~~~~v~~~~~~f~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P~~~i~~ 200 (312)
T cd00668 121 SRLYEKGLIYRGTHPVRITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLPEDVFDV 200 (312)
T ss_pred HHHHHCCCEEeecceeEeeeeEEEEcHHHHHHHHHHHhcCCcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCCcccccc
Confidence 99999999999 4556666653 1 11266666531 222 222
Q ss_pred ccc--HHHHHHHHhhcC--------CCeEEEEeeCCcc-ccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcc
Q 014355 323 STD--LAALWYRLNEEK--------AEWIIYVTDVGQQ-LHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKR 391 (426)
Q Consensus 323 t~D--iA~~~~r~~~~~--------~d~~i~V~g~~q~-~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~k 391 (426)
=-| ++|... ..... ...-|++.|.||. .|+....+++.+++.. .++. .|+.+|+|+..+|+|
T Consensus 201 Wfds~~~~~~~-~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~---~~~~---~~~~~g~~~~~~g~K 273 (312)
T cd00668 201 WFDSGIGPLGS-LGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGE---IPPK---NLLVHGFVLDEGGQK 273 (312)
T ss_pred hhhccHHHHHH-cCCCccchhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCC---CCcc---eeEECcEEEcCCCcc
Confidence 111 222211 10000 1235889999998 7888887888877752 1233 333448899888799
Q ss_pred ccccCCCceeHHHHHHHHHHHHHHH
Q 014355 392 LRTRFSEVVRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 392 mSkR~G~~v~L~dLlde~~~~a~~~ 416 (426)
||||+||+|+++|++++....|...
T Consensus 274 mSKS~gn~v~~~d~~~~~~~da~R~ 298 (312)
T cd00668 274 MSKSKGNVIDPSDVVEKYGADALRY 298 (312)
T ss_pred ccccCCCcCCHHHHHHHcCcHHHHH
Confidence 9999999999999999987776654
No 22
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=6.4e-23 Score=206.64 Aligned_cols=240 Identities=17% Similarity=0.174 Sum_probs=185.0
Q ss_pred CCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHH-HCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccH
Q 014355 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLE-FSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAI 203 (426)
Q Consensus 125 ~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~-~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i 203 (426)
..+++|-.+.|+|+++..-||||+|++|-.|+|.|+|+ +.||+|+.+..|+|. +|
T Consensus 51 ~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDV----------------------DD-- 106 (586)
T KOG2007|consen 51 NNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDV----------------------DD-- 106 (586)
T ss_pred CCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccch----------------------hH--
Confidence 45778999999999999999999999999999999999 999999999999994 23
Q ss_pred HHHHHHHHHhhcc-cCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCce-eeecc-ccccCcHH
Q 014355 204 GELQEFYRRSKNR-FDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIP 280 (426)
Q Consensus 204 ~~l~~~y~~~~~~-~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-d~~~E-s~~~~~v~ 280 (426)
++.++++.. +.+.| ..|.+....+.++|.+++.+|||-. +.... |.|.+.+.
T Consensus 107 ----KII~RAr~~~m~e~~---------------------~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II 161 (586)
T KOG2007|consen 107 ----KIIKRARKEEMGEKP---------------------LSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQII 161 (586)
T ss_pred ----HHHHHhhhhhhccch---------------------hhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHH
Confidence 333433211 11111 2233332256689999999999996 54444 77888999
Q ss_pred HHHHHHHHCCCEEEeCCeEEEEec----------CC------------------CCCeEEEe--cCCcccccccc----H
Q 014355 281 GVIDELSKQGLVEESQGARVIFIE----------GV------------------NIPLIIVK--SDGGFNYASTD----L 326 (426)
Q Consensus 281 ~vi~~L~~~g~~~~~dGa~~~~~~----------g~------------------~~d~Vl~k--sDG~~tY~t~D----i 326 (426)
+.+++++++|++|..||.+||++. |+ ..||.||| +.|.|.|-+++ .
T Consensus 162 ~fIqkIIdnG~aY~~dGsVYFdv~kf~~~YgKL~G~~~~~~~gEg~l~ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRP 241 (586)
T KOG2007|consen 162 KFIQKIIDNGYAYAVDGSVYFDVDKFPHSYGKLVGQRKNLQEGEGVLSDSRKRSPADFALWKASKPGEPSWESPWGKGRP 241 (586)
T ss_pred HHHHHHHhCCceeeeCCcEEEecccccchhhhhcCchhhcccCcCccccccCCChhhhhhhhhcCCCCCCCCCCCCCCCC
Confidence 999999999999999999999985 10 13788987 48999999988 6
Q ss_pred HHHHHHH--hhcCCCeEEEEeeCCccccHHHH-HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHH
Q 014355 327 AALWYRL--NEEKAEWIIYVTDVGQQLHFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 403 (426)
Q Consensus 327 A~~~~r~--~~~~~d~~i~V~g~~q~~hf~~~-~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~ 403 (426)
+||+++- ..--+..-+||++++-++-||++ .++++.-.+-. .+.|...|.|. |.+.. +|.||||+.+|+||+.
T Consensus 242 GWHIECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~~~-~~~wVnYflHt--GhL~i-~g~KMSKSLkNFiTIk 317 (586)
T KOG2007|consen 242 GWHIECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAAFD-DSQWVNYFLHT--GHLTI-NGEKMSKSLKNFITIK 317 (586)
T ss_pred CceeeeHHHHHHhhccccceecCcccccCCCcccHHHHHHHHhc-CCccceeEEEc--Ceeee-ccchhhhhhccceeHH
Confidence 7777652 11112345789999999999998 68887543322 13588899999 55764 5789999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 014355 404 DLLDEAKNRSKAVL 417 (426)
Q Consensus 404 dLlde~~~~a~~~i 417 (426)
|+|+....++....
T Consensus 318 e~Lk~~sp~qLRl~ 331 (586)
T KOG2007|consen 318 EALKKYSPRQLRLA 331 (586)
T ss_pred HHHHhcCHHHHHHH
Confidence 99999888887653
No 23
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.89 E-value=8.3e-23 Score=180.73 Aligned_cols=143 Identities=22% Similarity=0.213 Sum_probs=119.5
Q ss_pred EEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHHHHH
Q 014355 132 VDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYR 211 (426)
Q Consensus 132 VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~ 211 (426)
|++|+|||+|++||||+|+++++|+++|.||..|++|...++++|+|.|++..+...
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~----------------------- 57 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK----------------------- 57 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc-----------------------
Confidence 589999999999999999999999999999999999999999999999998654210
Q ss_pred HhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccccCcHHHHHHHHHHCCC
Q 014355 212 RSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGL 291 (426)
Q Consensus 212 ~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~Es~~~~~v~~vi~~L~~~g~ 291 (426)
...|+++++.+.+.|+++|+
T Consensus 58 ------------------------------~~~~~~~~~~~~~~~~~~~~------------------------------ 77 (143)
T cd00802 58 ------------------------------GENAKAFVERWIERIKEDVE------------------------------ 77 (143)
T ss_pred ------------------------------CCCHHHHHHHHHHHHHHHHH------------------------------
Confidence 02356677777777887776
Q ss_pred EEEeCCeEEEEecCCCCCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCC
Q 014355 292 VEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDS 371 (426)
Q Consensus 292 ~~~~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~ 371 (426)
|.+.|+|...++...+ ..+++.|.||..|+++.+.+++++|+.
T Consensus 78 -----------------------------y~~~~~a~~~~~~~~~---~~i~~~G~Dq~~h~~~~~~i~~~~~~~----- 120 (143)
T cd00802 78 -----------------------------YMFLQAADFLLLYETE---CDIHLGGSDQLGHIELGLELLKKAGGP----- 120 (143)
T ss_pred -----------------------------HHHHHHHHHHHHhhCC---cEEEEechhHHHHHHHHHHHHHHhCCC-----
Confidence 9999999888766433 788999999999999999999999862
Q ss_pred CCCcEEEEEeEEEEcCCCccccccC
Q 014355 372 TYPKASHVGFGLVLGEDGKRLRTRF 396 (426)
Q Consensus 372 ~~~~~~Hv~~g~v~~~~g~kmSkR~ 396 (426)
. ...|+.|+++.+.+|+|||||+
T Consensus 121 ~--~p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 121 A--RPFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred C--CceEEEeCCeECCCCCcCCCCC
Confidence 2 2455566899988889999995
No 24
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.84 E-value=4.1e-20 Score=184.20 Aligned_cols=228 Identities=18% Similarity=0.159 Sum_probs=155.0
Q ss_pred eEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHH
Q 014355 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (426)
Q Consensus 129 kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (426)
|++|-..-|+|+|++||||+|+.+++|+++|.++..|++|.....++|.|..+...+...
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~-------------------- 60 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI-------------------- 60 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHc--------------------
Confidence 467888999999999999999999999999999999999999999999987765332110
Q ss_pred HHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHHHH
Q 014355 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGVI 283 (426)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-----s~~~~~v~~vi 283 (426)
+ . + .+++++.+.+.|++++++|||.+|+... ..+...+++++
T Consensus 61 -----g----~------------------~------~~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f 107 (314)
T cd00812 61 -----G----R------------------D------PEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLF 107 (314)
T ss_pred -----C----C------------------C------HHHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHH
Confidence 0 0 0 2456777788999999999999986322 23445678888
Q ss_pred HHHHHCCCEEEeCCeEEEE---------e--c------------CCCCC---------eE-EEe--cCCccc------cc
Q 014355 284 DELSKQGLVEESQGARVIF---------I--E------------GVNIP---------LI-IVK--SDGGFN------YA 322 (426)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~---------~--~------------g~~~d---------~V-l~k--sDG~~t------Y~ 322 (426)
..|.++|++|+.++.+++. + + ...-| .+ +-| .=|.|. |.
T Consensus 108 ~~L~~~G~iy~~~~~v~~~~~~~~~f~~l~~~~~~~~l~~~l~~~~~~p~~~~~~~~~~l~isR~~~wGipvP~~~~i~~ 187 (314)
T cd00812 108 LKLYEKGLAYKKEAPVNWCKLLDQWFLKYSETEWKEKLLKDLEKLDGWPEEVRAMQENWIGCSRQRYWGTPIPWTDTMES 187 (314)
T ss_pred HHHHHCCCEEecCceeeeeCccceEEEEcCcHHHHHHHHHHHHhcCcCCHHHHHHHHHHheeeeecCCcCCcCccccccc
Confidence 9999999999988776653 2 1 00000 00 111 124432 22
Q ss_pred cccH-----HHH----------------HHHHhhc-CCCeEEEEeeCCc---c-ccHHHHHHHHHHcCCCCCCCCCCCcE
Q 014355 323 STDL-----AAL----------------WYRLNEE-KAEWIIYVTDVGQ---Q-LHFDMVFSAAKRAGWLSADDSTYPKA 376 (426)
Q Consensus 323 t~Di-----A~~----------------~~r~~~~-~~d~~i~V~g~~q---~-~hf~~~~~~~~~lg~~~~~~~~~~~~ 376 (426)
-.|- .|. ...+..+ ..| |+|+|.|| + .|+....+++..+|+.. ..+...+
T Consensus 188 w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~d--i~v~G~D~i~~h~~~~~~~~~~l~~~g~~~--~~~~~~~ 263 (314)
T cd00812 188 LSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVD--IYIGGKEHAPNHLLYSRFNHKALFDEGLVT--DEPPKGL 263 (314)
T ss_pred ccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCe--eeecchhHHHHHHHHHHHHHHHHcCccccc--ccCcHHh
Confidence 2231 111 0111111 233 89999998 5 45566678888788510 0122334
Q ss_pred EEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHH
Q 014355 377 SHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 377 ~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~ 416 (426)
.+ +|+|+. +|+|||||+||+|+++|++++....|...
T Consensus 264 ~~--~g~v~~-~g~KmSkS~Gn~v~~~dll~~~~~Da~R~ 300 (314)
T cd00812 264 IV--QGMVLL-EGEKMSKSKGNVVTPDEAIKKYGADAARL 300 (314)
T ss_pred ee--cceEec-CccccCCcCCCCCCHHHHHHHhCcHHHHH
Confidence 43 488986 68899999999999999999977665543
No 25
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.83 E-value=6.5e-20 Score=172.74 Aligned_cols=183 Identities=17% Similarity=0.161 Sum_probs=136.6
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
.++++.+..|+|.|++++||||+|+.++.|+++|.+|..|++|.....++|.|..+...++.
T Consensus 17 ~~~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~------------------ 78 (213)
T cd00672 17 NPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRARE------------------ 78 (213)
T ss_pred CCCCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHH------------------
Confidence 45788999999999999999999999999999999999999999999999998766533210
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCce-eeeccccccCcHHHHHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGESFYNPYIPGVID 284 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-d~~~Es~~~~~v~~vi~ 284 (426)
. | .-++++++...+.|++++++|||++ |.+...
T Consensus 79 ----------~--------------------g-----~~p~e~~~~~~~~f~~~~~~l~i~~~d~~~rt----------- 112 (213)
T cd00672 79 ----------E--------------------G-----LSWKEVADYYTKEFFEDMKALNVLPPDVVPRV----------- 112 (213)
T ss_pred ----------c--------------------C-----CCHHHHHHHHHHHHHHHHHHcCCCCCCcceee-----------
Confidence 0 0 0135677777889999999999998 543332
Q ss_pred HHHHCCCEEEeCCeEEEEecCCCCCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHH-HHHHHHc
Q 014355 285 ELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMV-FSAAKRA 363 (426)
Q Consensus 285 ~L~~~g~~~~~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~-~~~~~~l 363 (426)
|+.---|. ..++ .| .-+||++++.+..|+++ +.+++..
T Consensus 113 ------------------------------------Wh~ec~am-~~~~--lg--~~~dih~~G~Dl~fpH~~~~~a~~~ 151 (213)
T cd00672 113 ------------------------------------WHIECSAM-AMKY--LG--ETFDIHGGGVDLIFPHHENEIAQSE 151 (213)
T ss_pred ------------------------------------hhHHHHHH-HHHH--cC--CCccEEeecCCCCcChHHHHHHHHH
Confidence 44332222 2222 22 44578999999999988 4555433
Q ss_pred CCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHHHH
Q 014355 364 GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLI 418 (426)
Q Consensus 364 g~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~i~ 418 (426)
...+ .+++..|.|. |+|. .+|+|||||+||+|+++|++++....|....-
T Consensus 152 a~~g--~~~~~~~~h~--~~v~-~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~ 201 (213)
T cd00672 152 AATG--KPFARYWLHT--GHLT-IDGEKMSKSLGNFITVRDALKKYDPEVLRLAL 201 (213)
T ss_pred HHhC--CCCCcEEEEE--EEEe-ccCcchhhcCCCccCHHHHHHHcCHHHHHHHH
Confidence 3222 1567789998 6677 56889999999999999999998877766543
No 26
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.83 E-value=3.6e-19 Score=179.06 Aligned_cols=243 Identities=17% Similarity=0.186 Sum_probs=157.9
Q ss_pred eEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHH
Q 014355 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (426)
Q Consensus 129 kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (426)
+..|--..|||+|++||||+|+.++.|+++|.++..||+|.....++|.|..+..-+... .+.. ....+.+
T Consensus 2 ~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~---lg~~---~~~~~~~--- 72 (338)
T cd00818 2 EFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKE---LGIS---GKKDIEK--- 72 (338)
T ss_pred CeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHH---hCCC---CCcchhh---
Confidence 567788899999999999999999999999999999999999999999999987544211 0100 0000000
Q ss_pred HHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeee-----ccccccCcHHHHH
Q 014355 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-----GESFYNPYIPGVI 283 (426)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~-----~Es~~~~~v~~vi 283 (426)
.+-.+..+.++++++.+.+.|.+++++|||.++|. .+..|.+.+.+++
T Consensus 73 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f 125 (338)
T cd00818 73 ---------------------------MGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVF 125 (338)
T ss_pred ---------------------------cCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHH
Confidence 00112234567788999999999999999977542 2345677899999
Q ss_pred HHHHHCCCEEEeCCeEEEEe------------c-----------C-----------------C------------CCCeE
Q 014355 284 DELSKQGLVEESQGARVIFI------------E-----------G-----------------V------------NIPLI 311 (426)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~~------------~-----------g-----------------~------------~~d~V 311 (426)
.+|.++|++|+.++.+++.+ + . . ..+..
T Consensus 126 ~~L~~~G~iY~~~~~v~~~v~~~~~~qwf~~l~~~~~~l~~~~~~~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~P 205 (338)
T cd00818 126 KQLHEKGLLYRGYKVVPWPLIYRATPQWFIRVTKIKDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIP 205 (338)
T ss_pred HHHHHCCCEeccCCeeeeEEEEEecCeEEEEcHHHHHHHHHHHhcCcEECHHHHHHHHHHHhcchhcceeeecccCceee
Confidence 99999999998877554432 1 0 0 01111
Q ss_pred E--EecCC--------ccccc--cccHHHHH---H-----HHhh-cCCCeEEEEeeCCccc-cHHHHHHHH-HHcCCCCC
Q 014355 312 I--VKSDG--------GFNYA--STDLAALW---Y-----RLNE-EKAEWIIYVTDVGQQL-HFDMVFSAA-KRAGWLSA 368 (426)
Q Consensus 312 l--~ksDG--------~~tY~--t~DiA~~~---~-----r~~~-~~~d~~i~V~g~~q~~-hf~~~~~~~-~~lg~~~~ 368 (426)
+ ..++| ...|. ..-+.+.. + .++. +..| +.+.|-|+.. ||..+.-.+ -..|..
T Consensus 206 ~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~~p~d--~~~~GkDii~~wf~~~~~~~~~~~~~~-- 281 (338)
T cd00818 206 VWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPAD--FILEGSDQTRGWFYSLLLLSTALFGKA-- 281 (338)
T ss_pred EEEecCCCeEEEecCCceEEEEEeCCCCHHHHcCCCCcchhhhccCCCe--EEeecchHHhHHHHHHHHHHHHhcCCC--
Confidence 1 12222 12222 11111211 0 1211 2223 4577988863 666654222 233432
Q ss_pred CCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHH
Q 014355 369 DDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 369 ~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~ 416 (426)
++...+.| |++.+.+|+||||++||+|+++|++++....+...
T Consensus 282 --p~~~~~~h---g~~~~~~g~KmSKS~gn~i~~~~~~~~~~~D~~R~ 324 (338)
T cd00818 282 --PYKNVIVH---GFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRL 324 (338)
T ss_pred --ccceEEEE---eeEECCCCCCCCCCCCCcCCHHHHHHHcCcHHHHH
Confidence 33444555 77887789999999999999999999987766654
No 27
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.83 E-value=2.7e-19 Score=178.73 Aligned_cols=227 Identities=17% Similarity=0.212 Sum_probs=154.0
Q ss_pred eEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHH
Q 014355 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (426)
Q Consensus 129 kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (426)
++.|--+-|+|+|++||||+|+.++.|+++|.+|..|++|.....++|.|..+..-+..
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~--------------------- 59 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE--------------------- 59 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHH---------------------
Confidence 46778888999999999999999999999999999999999999999998776543210
Q ss_pred HHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeee-c--cccccCcHHHHHHH
Q 014355 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-G--ESFYNPYIPGVIDE 285 (426)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~-~--Es~~~~~v~~vi~~ 285 (426)
+|- ..+++++.+.+.|+++|++|||.||.+ . ++.+.+.+.+++++
T Consensus 60 ---------------------------~g~-----~~~e~~~~~~~~~~~~l~~LgI~~D~~~~tt~~~~~~~v~~i~~~ 107 (319)
T cd00814 60 ---------------------------EGV-----TPQELCDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKK 107 (319)
T ss_pred ---------------------------cCC-----CHHHHHHHHHHHHHHHHHHcCCcCCCCeeCCCHHHHHHHHHHHHH
Confidence 000 024578888999999999999999743 3 34567889999999
Q ss_pred HHHCCCEEEeC-------------------CeEEEEec------------CC-------------------CCCeEEEec
Q 014355 286 LSKQGLVEESQ-------------------GARVIFIE------------GV-------------------NIPLIIVKS 315 (426)
Q Consensus 286 L~~~g~~~~~d-------------------Ga~~~~~~------------g~-------------------~~d~Vl~ks 315 (426)
|.++|++|+.+ ..++|+++ +. -.|.-|-|.
T Consensus 108 L~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~ 187 (319)
T cd00814 108 LYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRD 187 (319)
T ss_pred HHHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCcc
Confidence 99999999754 34445542 00 012222221
Q ss_pred -----------CCcccccccc--HHHHH------HHH-----hhcCCCeEEEEeeCCccccHHHHH-HHHHHcCCCCCCC
Q 014355 316 -----------DGGFNYASTD--LAALW------YRL-----NEEKAEWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADD 370 (426)
Q Consensus 316 -----------DG~~tY~t~D--iA~~~------~r~-----~~~~~d~~i~V~g~~q~~hf~~~~-~~~~~lg~~~~~~ 370 (426)
.|...|.--| ++|.- .+. -..+....+.+.|.|+..+..... +++.++|+.
T Consensus 188 ~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~~~~~---- 263 (319)
T cd00814 188 LFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAIYWPAMLLGAGLP---- 263 (319)
T ss_pred CcccCeeCCCCCCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEEEEeechhhhhHHHHHHHHHhCCCC----
Confidence 1333343333 22210 000 012234578899998755432233 445566763
Q ss_pred CCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHH
Q 014355 371 STYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 371 ~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~ 416 (426)
+...+.+. |++.. +|+||||++||+|++.|++++....+...
T Consensus 264 -~~~~~~~~--~~~~~-~g~kmSkS~gn~i~~~~~l~~~~~d~~R~ 305 (319)
T cd00814 264 -LPTRIVAH--GYLTV-EGKKMSKSRGNVVDPDDLLERYGADALRY 305 (319)
T ss_pred -CCcEeeee--eeEEE-CCeeecccCCcccCHHHHHHHcCchHHHH
Confidence 22344443 77886 48899999999999999999877665543
No 28
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.82 E-value=3.9e-19 Score=185.48 Aligned_cols=94 Identities=20% Similarity=0.300 Sum_probs=82.2
Q ss_pred CCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC
Q 014355 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (426)
Q Consensus 308 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~ 387 (426)
.|+||+||||+|||. +|++++++ ..++|++| +|.||..|+++++.++++||+. .+.+.|+++ +.+.
T Consensus 172 ~D~Vl~RsdG~ptY~---~A~~vdD~-~~~ithvI--rG~d~~~~t~~~~~l~~aLg~~------~p~~~H~p~--l~~~ 237 (470)
T TIGR00464 172 DDFVILRSDGSPTYN---FAVVVDDY-LMKITHVI--RGEDHISNTPKQILIYQALGWK------IPVFAHLPM--ILDE 237 (470)
T ss_pred CCeEEEecCCCcccc---cHHHHHHH-hCCCCEEE--ECchhhcCHHHHHHHHHHcCCC------CCeEEEEee--eecC
Confidence 489999999999999 89999998 57999998 9999999999999999999984 478999988 5557
Q ss_pred CCccccccCCCceeHHHHHHHH-HHHHHHH
Q 014355 388 DGKRLRTRFSEVVRLVDLLDEA-KNRSKAV 416 (426)
Q Consensus 388 ~g~kmSkR~G~~v~L~dLlde~-~~~a~~~ 416 (426)
+|.|||||+| .+++++|+++. ...|...
T Consensus 238 ~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~ 266 (470)
T TIGR00464 238 DGKKLSKRDG-ATSIMQFKEQGYLPEALIN 266 (470)
T ss_pred CCccccccCC-CccHHHHHHCCCCHHHHHH
Confidence 8899999999 89999999996 4444433
No 29
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.80 E-value=2.3e-18 Score=176.04 Aligned_cols=134 Identities=19% Similarity=0.213 Sum_probs=100.6
Q ss_pred eEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHH
Q 014355 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (426)
Q Consensus 129 kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (426)
+.+|....|+|+|++||||+|+.++.|+++|.++..|++|......+|.|..+...+...... ....+.
T Consensus 2 ~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~-------~~~~~~---- 70 (382)
T cd00817 2 VFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGI-------EGKTRH---- 70 (382)
T ss_pred cEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcc-------cccchh----
Confidence 578899999999999999999999999999999999999999999999999887554321000 000000
Q ss_pred HHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec-----cccccCcHHHHH
Q 014355 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPGVI 283 (426)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~-----Es~~~~~v~~vi 283 (426)
..++ .+.++..+++++.+.+.+++++++|||.+||.. +..|...+.+++
T Consensus 71 ---------~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f 124 (382)
T cd00817 71 ---------DLGR-----------------EEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAF 124 (382)
T ss_pred ---------cCCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHH
Confidence 0000 112334566788888999999999999998532 234556799999
Q ss_pred HHHHHCCCEEEeCCeE
Q 014355 284 DELSKQGLVEESQGAR 299 (426)
Q Consensus 284 ~~L~~~g~~~~~dGa~ 299 (426)
.+|.++|++|+.+..+
T Consensus 125 ~~L~~~G~iy~~~~~~ 140 (382)
T cd00817 125 VRLYEKGLIYRDNRLV 140 (382)
T ss_pred HHHHHCCCEEeeeeEE
Confidence 9999999999865433
No 30
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.80 E-value=5.5e-19 Score=184.49 Aligned_cols=91 Identities=20% Similarity=0.282 Sum_probs=78.0
Q ss_pred CCeEEEecCCccccccccH-HHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEc
Q 014355 308 IPLIIVKSDGGFNYASTDL-AALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG 386 (426)
Q Consensus 308 ~d~Vl~ksDG~~tY~t~Di-A~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~ 386 (426)
.|+||+||||+|||.++|+ +.|.++ +|++| .|.||..+++++..++++||+. .+.+.|+++ +.+
T Consensus 182 ~D~Vl~RsDG~ptY~~a~vVdD~~~~-----ithvI--rG~d~~~~t~~q~~l~~alG~~------~p~~~H~pl--i~~ 246 (476)
T PRK01406 182 DDFVILRSDGTPTYNFAVVVDDHLMG-----ITHVI--RGEDHLSNTPKQILLYEALGWE------VPVFAHLPL--ILG 246 (476)
T ss_pred CCcEEEecCCCccccchHHHHHHHcC-----CCEEE--ECchhhcCHHHHHHHHHHhCCC------CCeEEEeee--eeC
Confidence 4899999999999999998 666654 48997 9999999999999999999984 478999987 656
Q ss_pred CCCccccccCCCceeHHHHHHHH-HHHHH
Q 014355 387 EDGKRLRTRFSEVVRLVDLLDEA-KNRSK 414 (426)
Q Consensus 387 ~~g~kmSkR~G~~v~L~dLlde~-~~~a~ 414 (426)
.+|.|||||+| .+++++++++. ...|.
T Consensus 247 ~~g~klSKR~g-~~~l~~l~~~G~~p~Ai 274 (476)
T PRK01406 247 PDGKKLSKRHG-ATSVEQYRDMGYLPEAL 274 (476)
T ss_pred CCCCcccCcCC-ccCHHHHHHCCCCHHHH
Confidence 78999999999 89999999985 44333
No 31
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.79 E-value=5.7e-18 Score=179.28 Aligned_cols=120 Identities=14% Similarity=0.177 Sum_probs=96.4
Q ss_pred ceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHH
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (426)
++++|--+-|+|+|++||||+|+.++.|+++|.++..|++|.....++|+|..+..-+... +
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~-----------g------- 62 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEA-----------G------- 62 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHc-----------C-------
Confidence 4688999999999999999999999999999999999999999999999987664322100 0
Q ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceee-ecc--ccccCcHHHHHH
Q 014355 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGE--SFYNPYIPGVID 284 (426)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~-~~E--s~~~~~v~~vi~ 284 (426)
. + .+++++.+...|++++++|||.+|. ..+ ..+.+.+.++++
T Consensus 63 -----------~------------------~------~~~~~~~~~~~~~~~l~~l~I~~D~~~~t~~~~~~~~v~~~~~ 107 (511)
T PRK11893 63 -----------I------------------S------PQELADRNSAAFKRLWEALNISYDDFIRTTDPRHKEAVQEIFQ 107 (511)
T ss_pred -----------C------------------C------HHHHHHHHHHHHHHHHHHhCCCcCCceeCCCHHHHHHHHHHHH
Confidence 0 0 1345677778999999999999974 333 346788999999
Q ss_pred HHHHCCCEEEeCCeEE
Q 014355 285 ELSKQGLVEESQGARV 300 (426)
Q Consensus 285 ~L~~~g~~~~~dGa~~ 300 (426)
+|.++|++|+.++.++
T Consensus 108 ~L~~~G~iY~~~~~~~ 123 (511)
T PRK11893 108 RLLANGDIYLGKYEGW 123 (511)
T ss_pred HHHHCCCEEEeeeeee
Confidence 9999999998665433
No 32
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.79 E-value=8e-18 Score=169.03 Aligned_cols=242 Identities=19% Similarity=0.228 Sum_probs=149.5
Q ss_pred ceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHH
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (426)
.+++|+-.= .|+|++||||+|..+.+|+++|.||..|++|...+..+|++. +.+ .|. .|.
T Consensus 19 ~~~~v~tgi-~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~-lrK--------vp~-------~l~--- 78 (353)
T cd00674 19 EKYVVASGI-SPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDR-LRK--------VPP-------NVP--- 78 (353)
T ss_pred CeEEEecCC-CCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCc-ccc--------ccc-------chh---
Confidence 467776444 599999999999999999999999999999999999999863 111 011 000
Q ss_pred HHHHH-hhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-ccc-cCc-HHHHH
Q 014355 208 EFYRR-SKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SFY-NPY-IPGVI 283 (426)
Q Consensus 208 ~~y~~-~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-s~~-~~~-v~~vi 283 (426)
+.+.+ .+.-+..-| ||+ .....+++.....|.+.+++|||++++.+. ..| ++. .+.+.
T Consensus 79 ~~~~~~~G~pi~~ip----------------~p~--g~~~~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~ 140 (353)
T cd00674 79 ESYEQYIGMPLSSVP----------------DPF--GCCESYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENIL 140 (353)
T ss_pred hHHHHhcCccchhch----------------hhc--CCCHHHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHH
Confidence 00110 010011100 010 111246777788999999999999986543 233 433 45555
Q ss_pred HHHHHCCCEEE---------eCCeEE-EE--ec--CCCCCeEE-Eec-CCccccccc-------cHH----HHHH-----
Q 014355 284 DELSKQGLVEE---------SQGARV-IF--IE--GVNIPLII-VKS-DGGFNYAST-------DLA----ALWY----- 331 (426)
Q Consensus 284 ~~L~~~g~~~~---------~dGa~~-~~--~~--g~~~d~Vl-~ks-DG~~tY~t~-------DiA----~~~~----- 331 (426)
..|.+.+.+.+ ....++ |. ++ |-....|+ +.. .|+-+|... |+- =.-|
T Consensus 141 ~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~cg~~~~~v~~~d~~~~~v~y~c~cG~~g~~~~~~g~~KL~Wr~dW~ 220 (353)
T cd00674 141 IALEKRDEIMAILNEYRGRELQETWYPFMPYCEKCGKDTTTVEAYDAKAGTVTYKCECGHEETVDIRTGRGKLTWRVDWP 220 (353)
T ss_pred HHHHHCChHHHHHHHhcCCccCCCceeeeeecCCcCcceeEEEEEeCCCCeEEEEcCCCCEEEEeecCCCcccCCCCCch
Confidence 56666664332 111111 10 11 21111111 111 233445431 120 0111
Q ss_pred -HHhhcCCCeEEEEeeCCcccc---HHHHHHHHH-HcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHH
Q 014355 332 -RLNEEKAEWIIYVTDVGQQLH---FDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLL 406 (426)
Q Consensus 332 -r~~~~~~d~~i~V~g~~q~~h---f~~~~~~~~-~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLl 406 (426)
|+.-.+. -+-++|.||..| |.+++++++ .+|+.+ + .|+.||+|.+.+|+|||||+||+|+++|+|
T Consensus 221 ~rW~~l~V--d~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~------P--~~~~ye~V~l~gg~KMSKSkGnvI~~~dll 290 (353)
T cd00674 221 MRWAILGV--DFEPFGKDHASAGGSYDTGKEIAREIFGGEP------P--VPVMYEFIGLKGGGKMSSSKGNVITPSDWL 290 (353)
T ss_pred hhhhhcCC--CEEeeCccccccccHHHHHHHHHHHHhCCCC------C--eEEEeeeEEeCCCCccCCCCCCcCCHHHHH
Confidence 1222343 356899999999 999999998 999842 2 567889999887779999999999999999
Q ss_pred HHHHHHHHHHH
Q 014355 407 DEAKNRSKAVL 417 (426)
Q Consensus 407 de~~~~a~~~i 417 (426)
+++...|....
T Consensus 291 ~~~~~dalR~~ 301 (353)
T cd00674 291 EVAPPEVLRYL 301 (353)
T ss_pred HHhChHHHHHH
Confidence 99887776654
No 33
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.77 E-value=8.7e-18 Score=174.93 Aligned_cols=86 Identities=17% Similarity=0.289 Sum_probs=75.5
Q ss_pred CCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC
Q 014355 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (426)
Q Consensus 308 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~ 387 (426)
.|+||+||||+|||.+ |++++++ ..+++++| .|.||..|++++..++++||+. .+.+.|+++ |.+.
T Consensus 171 ~D~Vi~RsDG~ptY~~---a~vVDD~-~m~ithVI--RG~d~~~~t~~q~~l~~aLG~~------~p~~~H~pl--v~~~ 236 (513)
T PRK14895 171 DDMVLLRADGTATYML---AVVVDDH-DMGITHII--RGDDHLTNAARQLAIYQAFGYA------VPSMTHIPL--IHGA 236 (513)
T ss_pred CCcEEEEeCCCcchhh---HHHHHHH-hcCCCEEE--ECchHhhhHHHHHHHHHHcCCC------CCeEEEEEe--EEcC
Confidence 4899999999999996 5788888 57999998 9999999999999999999984 478999976 9989
Q ss_pred CCccccccCCCceeHHHHHHH
Q 014355 388 DGKRLRTRFSEVVRLVDLLDE 408 (426)
Q Consensus 388 ~g~kmSkR~G~~v~L~dLlde 408 (426)
+|+|||||.| .+++.++.++
T Consensus 237 ~g~KLSKR~g-~~~i~~~r~~ 256 (513)
T PRK14895 237 DGAKLSKRHG-ALGIEAYKDM 256 (513)
T ss_pred CCCccccccC-chhHHHHHHC
Confidence 9999999999 4677776664
No 34
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.75 E-value=6.1e-17 Score=172.31 Aligned_cols=119 Identities=19% Similarity=0.293 Sum_probs=96.7
Q ss_pred EEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHHHH
Q 014355 131 VVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFY 210 (426)
Q Consensus 131 ~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y 210 (426)
+|.-+-|||+|++||||+|+.++.|+|+|.+|..|++|.....++|.|..+...+..
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~----------------------- 58 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQ----------------------- 58 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHH-----------------------
Confidence 567788999999999999999999999999999999999999999998765432210
Q ss_pred HHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec---cccccCcHHHHHHHHH
Q 014355 211 RRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVIDELS 287 (426)
Q Consensus 211 ~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~---Es~~~~~v~~vi~~L~ 287 (426)
+|- -++++++.+.+.|+++|++|||++|++. ++.|.+.+.+++++|.
T Consensus 59 -------------------------~g~-----~~~e~~~~~~~~~~~~l~~LgI~~D~~~~t~~~~~~~~v~~~~~~L~ 108 (530)
T TIGR00398 59 -------------------------EGL-----TPKELVDKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLK 108 (530)
T ss_pred -------------------------cCC-----CHHHHHHHHHHHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHH
Confidence 000 0235778888999999999999997543 4557788999999999
Q ss_pred HCCCEEEeCCeEEEE
Q 014355 288 KQGLVEESQGARVIF 302 (426)
Q Consensus 288 ~~g~~~~~dGa~~~~ 302 (426)
++|++|+.++.+++.
T Consensus 109 ~kG~iY~~~~~v~~~ 123 (530)
T TIGR00398 109 ENGYIYEKEIKQLYC 123 (530)
T ss_pred HCCCEEEeeeEEEec
Confidence 999999877655553
No 35
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.74 E-value=1.3e-17 Score=171.65 Aligned_cols=144 Identities=16% Similarity=0.212 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHcCCcee-eeccccccCcHHHHHHHHHHCCCEEEe-----------------------CC--------
Q 014355 250 EISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDELSKQGLVEES-----------------------QG-------- 297 (426)
Q Consensus 250 ~~~~~~~~~~~~~Lgi~fd-~~~Es~~~~~v~~vi~~L~~~g~~~~~-----------------------dG-------- 297 (426)
+.+.+.+.++|+.|||.+| +++||...+.+.+++++|.++|++|.. +|
T Consensus 51 ~~~~~~I~e~L~wLGI~~De~y~QSer~~~y~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~ 130 (445)
T PRK12558 51 QEYADAIAEDLKWLGINWDRTFRQSDRFDRYDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEE 130 (445)
T ss_pred HHHHHHHHHHHHHcCCCCCccccHHHHHHHHHHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHH
Confidence 4456788899999999997 666765556789999999999998840 11
Q ss_pred ------------eEEEEec-----------C-------CCCCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeC
Q 014355 298 ------------ARVIFIE-----------G-------VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDV 347 (426)
Q Consensus 298 ------------a~~~~~~-----------g-------~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~ 347 (426)
++-|++. | .-.|+||.|+||.|||. +|..++.. ..+.+++| .|.
T Consensus 131 ~~~~~~~~g~~~~iR~k~~~~~~~~~D~i~G~~~~~~~~~~D~Vi~R~dg~PtY~---fA~vVDD~-~m~ITHVi--RG~ 204 (445)
T PRK12558 131 EKAALEAEGRKPHWRFKLDDEPISWDDLIRGEQSIDAASLSDPVLIRADGSYLYT---LPSVVDDI-DMGITHII--RGE 204 (445)
T ss_pred HHHhHHhcCCCceEEEecCCCceEEEEEeeeEeecccccCCCeEEEecCCCcccc---ccceeccc-cCCCCEEE--ech
Confidence 1112221 1 11488999999999999 46666766 46889996 899
Q ss_pred CccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHH
Q 014355 348 GQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDE 408 (426)
Q Consensus 348 ~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde 408 (426)
||-..-++...+.++|||. .+.+.|+ .++.+++|+|||||.| .+++.++.++
T Consensus 205 d~l~~t~~q~~l~~alg~~------~P~f~H~--pli~~~~g~KLSKR~g-~~sv~~~r~~ 256 (445)
T PRK12558 205 DHVTNTAVQIQIFEALGAK------PPVFAHL--SLLTGADGKGLSKRLG-GLSIRSLRED 256 (445)
T ss_pred hhhhCCHHHHHHHHHhCCC------CCeEEEc--ccccCCCcccccccCC-CcCHHHHHHC
Confidence 9977766676999999994 4789999 5599999999999999 5788887765
No 36
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.
Probab=99.73 E-value=6.7e-18 Score=136.39 Aligned_cols=82 Identities=39% Similarity=0.596 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhcC-CCCCCCcccccc-cCCCCccccchhhHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCceeeeEE
Q 014355 14 ELEKVFDLALKATV-PNETDVRPLIAA-CTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSV 91 (426)
Q Consensus 14 ~~~~~i~~~l~~~~-~~~~~~~~~~~~-~~~~~GD~~t~~a~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~i~~v~v 91 (426)
++++.|.+++.... .......+.++. |++++|||+||+||.+||.+| ++|++||++|++.|...+.|++|+|
T Consensus 2 ~l~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~GD~~~n~a~~lak~~k------~~P~~iA~~i~~~l~~~~~i~~vev 75 (85)
T PF03485_consen 2 QLKKAISEALKKAFGIDLEEIEIQIEKPPNPKFGDYQTNIAFRLAKKLK------KNPREIAEEIAEKLEKSPIIEKVEV 75 (85)
T ss_dssp HHHHHHHHHHHHCHSTTCCCHGGGEEE-SSGGG-SEEEEHHHHHHHHTT------S-HHHHHHHHHHCHCTTTTEEEEEE
T ss_pred hHHHHHHHHHHHHhcccccccceEEEcCCCCCceeeeccchHHHHHHcC------CCHHHHHHHHHHhcCCCCCEEEEEE
Confidence 34555555555542 111223456665 478999999999999999999 9999999999999998888999999
Q ss_pred ecCcEEEEee
Q 014355 92 AGPGFVNVVL 101 (426)
Q Consensus 92 agpGfiNf~l 101 (426)
+|||||||+|
T Consensus 76 ~gpGFiN~~L 85 (85)
T PF03485_consen 76 AGPGFINFFL 85 (85)
T ss_dssp ETTTEEEEEE
T ss_pred cCCcEEEEeC
Confidence 9999999987
No 37
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.71 E-value=1.8e-16 Score=172.32 Aligned_cols=120 Identities=17% Similarity=0.222 Sum_probs=96.8
Q ss_pred ceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHH
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (426)
+++.|--.-|+|+|++||||+|+.++.|+++|.+|..|++|......+|+|..+..-+... +
T Consensus 4 ~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~-----------g------- 65 (648)
T PRK12267 4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKA-----------G------- 65 (648)
T ss_pred CCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHc-----------C-------
Confidence 5788999999999999999999999999999999999999999999999997665322100 0
Q ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeee-ccc--cccCcHHHHHH
Q 014355 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-GES--FYNPYIPGVID 284 (426)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~-~Es--~~~~~v~~vi~ 284 (426)
. + .+++++.+.+.|+++|++|||+||.+ +++ .+...++++++
T Consensus 66 -----------~------------------~------~~e~~d~~~~~fk~~l~~lgI~~D~f~rTt~~~h~~~v~~~~~ 110 (648)
T PRK12267 66 -----------K------------------T------PQEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIFE 110 (648)
T ss_pred -----------C------------------C------HHHHHHHHHHHHHHHHHHcCCCCCCCeeCCCHHHHHHHHHHHH
Confidence 0 0 13467788899999999999999743 333 35678999999
Q ss_pred HHHHCCCEEEeC--CeEE
Q 014355 285 ELSKQGLVEESQ--GARV 300 (426)
Q Consensus 285 ~L~~~g~~~~~d--Ga~~ 300 (426)
+|.++|++|+.+ |.+|
T Consensus 111 ~L~~kG~IY~~~~~~~yc 128 (648)
T PRK12267 111 KLYEQGDIYKGEYEGWYC 128 (648)
T ss_pred HHHHCCCEEEeeEEEeec
Confidence 999999999753 4444
No 38
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.68 E-value=2.2e-15 Score=164.48 Aligned_cols=122 Identities=17% Similarity=0.178 Sum_probs=99.7
Q ss_pred ceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHH
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (426)
++++|.-.-|+|+|++||||+|+.++.|+++|.+|..||+|......+|.|..+...++.. +
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~-----------g------- 63 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKE-----------G------- 63 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHc-----------C-------
Confidence 4688888899999999999999999999999999999999999999999987776443210 0
Q ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc---ccccCcHHHHHH
Q 014355 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE---SFYNPYIPGVID 284 (426)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E---s~~~~~v~~vi~ 284 (426)
. + .+++++.+.+.|++++++|||++|++.. ..|...+.+++.
T Consensus 64 -----------~------------------~------p~e~~~~~~~~~~~~~~~l~i~~d~f~rtt~~~h~~~v~~~~~ 108 (673)
T PRK00133 64 -----------I------------------T------PEELIARYHAEHKRDFAGFGISFDNYGSTHSEENRELAQEIYL 108 (673)
T ss_pred -----------C------------------C------HHHHHHHHHHHHHHHHHHhCCCCCCCccCCcHHHHHHHHHHHH
Confidence 0 1 1346677788999999999999986543 347788999999
Q ss_pred HHHHCCCEEEeCCeEEEE
Q 014355 285 ELSKQGLVEESQGARVIF 302 (426)
Q Consensus 285 ~L~~~g~~~~~dGa~~~~ 302 (426)
+|.++|++|+.++.+|+.
T Consensus 109 ~L~~~G~iy~~~~~~~y~ 126 (673)
T PRK00133 109 KLKENGYIYEKTIEQLYD 126 (673)
T ss_pred HHHHCCCEEEeeeEEEEe
Confidence 999999999877666654
No 39
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.67 E-value=1e-15 Score=163.76 Aligned_cols=121 Identities=15% Similarity=0.217 Sum_probs=97.5
Q ss_pred ceEEEEecCCCcCCCccchhHHHH-HHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHH
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRST-IIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsa-iiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (426)
++++|.-..|+|+|++||||+|+. ++.|+++|.+|..|++|.....++|.|..+..-+..
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~------------------- 63 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKK------------------- 63 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHH-------------------
Confidence 468999999999999999999999 999999999999999999999999998766533210
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc---ccccCcHHHHH
Q 014355 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE---SFYNPYIPGVI 283 (426)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E---s~~~~~v~~vi 283 (426)
.+ .+ .+++++.+.+.|.+++++|||.+|++.. ..|...+.+++
T Consensus 64 ------~g----~~------------------------~~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~ 109 (556)
T PRK12268 64 ------EG----VT------------------------PQELADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFF 109 (556)
T ss_pred ------cC----CC------------------------HHHHHHHHHHHHHHHHHHcCCcCCCCcCCCCHHHHHHHHHHH
Confidence 00 00 1346677778899999999999975432 25677899999
Q ss_pred HHHHHCCCEEEeCCeEEE
Q 014355 284 DELSKQGLVEESQGARVI 301 (426)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~ 301 (426)
.+|.++|++|+.++.+++
T Consensus 110 ~~L~~~G~~y~~~~~~~~ 127 (556)
T PRK12268 110 LKLYENGYIYKKTIEQAY 127 (556)
T ss_pred HHHHHCCCeEEeeeEEEe
Confidence 999999999987655554
No 40
>PLN02224 methionine-tRNA ligase
Probab=99.67 E-value=2.7e-15 Score=160.96 Aligned_cols=124 Identities=15% Similarity=0.243 Sum_probs=99.0
Q ss_pred CCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHH
Q 014355 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (426)
Q Consensus 125 ~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (426)
+++++++|.-.-|+|+|++||||+|+++++|+++|.+|..||+|....+++|.|.++..-+.. .+
T Consensus 66 ~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~-----------~g---- 130 (616)
T PLN02224 66 DEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAA-----------NG---- 130 (616)
T ss_pred CCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHH-----------cC----
Confidence 567889999999999999999999999999999999999999999999999999888744321 00
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec---cccccCcHHH
Q 014355 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPG 281 (426)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~---Es~~~~~v~~ 281 (426)
.+| +++|+.+...|++.+++|||++|.+. +..|...+++
T Consensus 131 --------------~~p------------------------~e~~~~~~~~~~~~~~~l~I~~D~f~rTt~~~h~~~vq~ 172 (616)
T PLN02224 131 --------------RNP------------------------PEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKE 172 (616)
T ss_pred --------------CCh------------------------HHHHHHHHHHHHHHHHHcCCCCCcCeeCCCHHHHHHHHH
Confidence 000 13455556778889999999997543 3456778999
Q ss_pred HHHHHHHCCCEEEeC--CeEEE
Q 014355 282 VIDELSKQGLVEESQ--GARVI 301 (426)
Q Consensus 282 vi~~L~~~g~~~~~d--Ga~~~ 301 (426)
++.+|.++|++|+.+ |.+|.
T Consensus 173 ~f~~L~~~G~Iy~~~~~~~yc~ 194 (616)
T PLN02224 173 FYARVFANGDIYRADYEGLYCV 194 (616)
T ss_pred HHHHHHHCCCEEEeeeeeeecC
Confidence 999999999999754 44443
No 41
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=99.65 E-value=7.1e-16 Score=158.25 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=70.9
Q ss_pred CCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC
Q 014355 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (426)
Q Consensus 308 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~ 387 (426)
.|+||+|+||.|||. +|..++.. ..|.++|| .|.||-.--++...+.++|||.+ .+.+.|++ ++.++
T Consensus 165 ~D~Vi~R~Dg~PtY~---fA~vVDD~-~mgIThVi--RG~d~l~~tp~Qi~Ly~aLg~~~-----pp~f~Hlp--li~~~ 231 (433)
T PRK12410 165 DSFVILRADKTPTYN---FACAVDDM-LYDISLII--RGEDHVSNTPKQILIREALGYNK-----EITYAHLP--IILNE 231 (433)
T ss_pred CCeEEEcCCCCcccc---ccchhchh-hcCCCEEE--echhhhhCcHHHHHHHHHcCCCC-----CCeEEEee--eeeCC
Confidence 479999999999999 56667776 57899996 89998776666668999999941 24799995 49999
Q ss_pred CCccccccCCCceeHHHHHHH
Q 014355 388 DGKRLRTRFSEVVRLVDLLDE 408 (426)
Q Consensus 388 ~g~kmSkR~G~~v~L~dLlde 408 (426)
+|+|||||+| ..+++++.++
T Consensus 232 ~g~KLSKR~~-~~~v~~~r~~ 251 (433)
T PRK12410 232 EGKKMSKRDN-ASSVKWLLEQ 251 (433)
T ss_pred CCCeeecccC-hhhHHHHHHC
Confidence 9999999999 6778877665
No 42
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=99.64 E-value=2.2e-14 Score=159.59 Aligned_cols=130 Identities=18% Similarity=0.277 Sum_probs=100.5
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHH
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (426)
+++.+|....|||+|+|||||+++.+++|+++|..|..||+|......+..|..+...+... .+- ...
T Consensus 37 ~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~---~g~----~~~----- 104 (800)
T PRK13208 37 KPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKY---YGI----RKD----- 104 (800)
T ss_pred CCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHH---hCC----Ccc-----
Confidence 56799999999999999999999999999999999999999999999999999987544321 000 000
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHH
Q 014355 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (426)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-----s~~~~~v~~ 281 (426)
.+ |-++.++..+++++.+.+.+++++++||+.+||..+ ..|...+..
T Consensus 105 ---------~~-------------------~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~ 156 (800)
T PRK13208 105 ---------DI-------------------SREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQK 156 (800)
T ss_pred ---------cC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHH
Confidence 00 001122344567788888999999999999997543 245567999
Q ss_pred HHHHHHHCCCEEEeC
Q 014355 282 VIDELSKQGLVEESQ 296 (426)
Q Consensus 282 vi~~L~~~g~~~~~d 296 (426)
++.+|.++|++|+..
T Consensus 157 ~f~~L~~~Gliy~~~ 171 (800)
T PRK13208 157 SFLDLYKKGLIYRAE 171 (800)
T ss_pred HHHHHHHCCCeeecC
Confidence 999999999999743
No 43
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.4e-14 Score=152.89 Aligned_cols=123 Identities=20% Similarity=0.295 Sum_probs=101.1
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHH
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (426)
.++++|--.=|.|+|++||||+++++.+|++||.+|..|++|..+...++.|+.|..-|... +
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~-----------g------ 66 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKE-----------G------ 66 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHc-----------C------
Confidence 46899999999999999999999999999999999999999999999999999887554311 0
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc---ccccCcHHHHH
Q 014355 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE---SFYNPYIPGVI 283 (426)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E---s~~~~~v~~vi 283 (426)
. +| +++++...+.|+++++.|||+||.+.. +.|...+++++
T Consensus 67 ------------~------------------tP------~el~d~~~~~~~~~~~~l~IsfD~F~rTt~~~h~~~vq~~f 110 (558)
T COG0143 67 ------------I------------------TP------QELVDKNHEEFKELFKALNISFDNFIRTTSPEHKELVQEFF 110 (558)
T ss_pred ------------C------------------CH------HHHHHHHHHHHHHHHHHhCCcccccccCCCHHHHHHHHHHH
Confidence 0 11 346677778899999999999986643 45678899999
Q ss_pred HHHHHCCCEEEe--CCeEEEE
Q 014355 284 DELSKQGLVEES--QGARVIF 302 (426)
Q Consensus 284 ~~L~~~g~~~~~--dGa~~~~ 302 (426)
++|.++|++|.. .|..|..
T Consensus 111 ~~L~~~G~I~~~~~~~~Yc~~ 131 (558)
T COG0143 111 LKLYENGDIYLREYEGLYCVS 131 (558)
T ss_pred HHHHHCCCEeccceeeeEccc
Confidence 999999999965 3555543
No 44
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=99.63 E-value=3.9e-15 Score=144.65 Aligned_cols=138 Identities=17% Similarity=0.190 Sum_probs=101.1
Q ss_pred HHHHHHHHHHcCCceee--eccccccCcHHHHHHHHHHCCCEEEe------------------CC--------------e
Q 014355 253 RKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLVEES------------------QG--------------A 298 (426)
Q Consensus 253 ~~~~~~~~~~Lgi~fd~--~~Es~~~~~v~~vi~~L~~~g~~~~~------------------dG--------------a 298 (426)
.+.+.++|+.||+..|. ...|.+.+.-.+++++|.++|.+|.. +| +
T Consensus 52 ~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~ 131 (272)
T TIGR03838 52 ADDILRTLEAYGLHWDGEVVYQSQRHALYQAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAA 131 (272)
T ss_pred HHHHHHHHHHcCCCCCCCeeeeeCCHHHHHHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCce
Confidence 35667789999998862 23455555667888889999988830 01 1
Q ss_pred EEEEec-----------C--------CCCCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHH
Q 014355 299 RVIFIE-----------G--------VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSA 359 (426)
Q Consensus 299 ~~~~~~-----------g--------~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~ 359 (426)
+-|++. | .-.|+||.|+||.|||. +|..++.. ..|.+++| .|.||...-++...+
T Consensus 132 ~Rlk~~~~~~~~~D~~~g~~~~~~~~~~~D~vi~R~Dg~ptY~---fA~vVDD~-~~gIThVi--RG~D~l~~t~~q~~l 205 (272)
T TIGR03838 132 WRLRVPDGVIAFDDRLQGPQQQDLAAAVGDFVLRRADGLFAYQ---LAVVVDDA-AQGITHVV--RGADLLDSTPRQIYL 205 (272)
T ss_pred EEEecCCCCceEEEeeeeEEEecCcccCCCEEEEecCCCcccc---Chhhhhcc-cCCCCEEE--eCHhhhhccHHHHHH
Confidence 112221 1 11478999999999998 57777776 57999995 899988777777799
Q ss_pred HHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHH
Q 014355 360 AKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDL 405 (426)
Q Consensus 360 ~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dL 405 (426)
.++|||. .+.+.|+ .++.+.+|.|||||+| ..+++++
T Consensus 206 ~~aLg~~------~P~y~H~--pll~~~~g~kLSKR~~-~~~i~~~ 242 (272)
T TIGR03838 206 QRLLGLP------PPRYLHL--PLVVNADGEKLSKQNG-APALDLS 242 (272)
T ss_pred HHHhCCC------CCeEEec--hhhhCCCCCeeeccCC-ccchhcC
Confidence 9999994 3689998 5598899999999999 5567664
No 45
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.62 E-value=2.4e-14 Score=151.22 Aligned_cols=238 Identities=16% Similarity=0.193 Sum_probs=142.4
Q ss_pred eEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHH
Q 014355 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (426)
Q Consensus 129 kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (426)
.++|+-. ..|+|+.||||+|..+.+|+++|.||..|++|..++..+|+|. + .+.|.. -+.. +
T Consensus 24 ~~~~~~g-~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~-l--------Rkvp~~-----~p~~---~ 85 (510)
T PRK00750 24 PVVVETG-IGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDG-L--------RKVPDN-----VPNQ---E 85 (510)
T ss_pred cEEEEeC-CCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCc-c--------cccCCC-----CCch---H
Confidence 3666644 4699999999999999999999999999999999999999974 0 011110 0000 0
Q ss_pred HHHH-hhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-ccc-cCcH-HHHHH
Q 014355 209 FYRR-SKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SFY-NPYI-PGVID 284 (426)
Q Consensus 209 ~y~~-~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-s~~-~~~v-~~vi~ 284 (426)
.+.+ .+.-+...|. ..|. -+.+++.....|.+.+++|||++|+.+. ..| ++.. +.+..
T Consensus 86 ~~~~~~G~pl~~~p~------------p~G~------~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~~~i~~ 147 (510)
T PRK00750 86 MLEEYLGKPLTEIPD------------PFGC------HESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYDEAILT 147 (510)
T ss_pred HHHHhcCcccccCCC------------CCCC------chHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchHHHHHH
Confidence 0000 0000000000 0011 2446677788899999999999986543 333 3333 33333
Q ss_pred HHHHCCCEEE--------eCCeEEEEe----c--CCCCCeEEEe---cCCccccccc--------------------cHH
Q 014355 285 ELSKQGLVEE--------SQGARVIFI----E--GVNIPLIIVK---SDGGFNYAST--------------------DLA 327 (426)
Q Consensus 285 ~L~~~g~~~~--------~dGa~~~~~----~--g~~~d~Vl~k---sDG~~tY~t~--------------------DiA 327 (426)
.|.+.+.+.+ +-.+-|+-. + |.....++.. ..|+-+|... |.|
T Consensus 148 ~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~cG~~~~~~~~~g~~KL~Wr~dW~ 227 (510)
T PRK00750 148 ALENRDEIMEILLPYLGEERQATYSPFLPICPKCGKVLTTPVISYDAEAGTVTYDCECGHEGEVPVTGGHGKLQWKVDWP 227 (510)
T ss_pred HHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCCCCccceEEEEEEeCCCCEEEEEcCCCCEEEEecCCCCcccCCCCCcH
Confidence 3444442221 101112111 1 2111111111 1223344221 222
Q ss_pred HHHHHHhhcCCCeEEEEeeCCccc-cHHHHHHHHH-HcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHH
Q 014355 328 ALWYRLNEEKAEWIIYVTDVGQQL-HFDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDL 405 (426)
Q Consensus 328 ~~~~r~~~~~~d~~i~V~g~~q~~-hf~~~~~~~~-~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dL 405 (426)
+ |+.-.+.| +.+.|.||.. ++.....+++ .+|+.+ + .|+.|++|.+.+|+|||||+||+|+++|+
T Consensus 228 ~---rW~~l~Vd--~e~~GkDh~~~s~~~~~~i~~~ilg~~~------P--~~~~y~~v~~~~G~KMSKSkGN~i~~~d~ 294 (510)
T PRK00750 228 M---RWAALGVD--FEPFGKDHASASYDTSKKIAREILGGEP------P--EPFVYELFLDKKGEKISKSKGNVITIEDW 294 (510)
T ss_pred H---HHHHcCCC--EEeeCcccCcchHHHHHHHHHHHcCCCC------C--eeeeeeeEEeCCCCcccccCCCccCHHHH
Confidence 1 22223544 5579999999 9999999998 999842 2 23456889988789999999999999999
Q ss_pred HHHHHHHHHH
Q 014355 406 LDEAKNRSKA 415 (426)
Q Consensus 406 lde~~~~a~~ 415 (426)
++.+...+..
T Consensus 295 l~~~~pd~lR 304 (510)
T PRK00750 295 LEYAPPESLR 304 (510)
T ss_pred HHHCCHHHHH
Confidence 9998887777
No 46
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=99.61 E-value=2.7e-14 Score=142.23 Aligned_cols=101 Identities=22% Similarity=0.212 Sum_probs=76.1
Q ss_pred CCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC
Q 014355 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (426)
Q Consensus 308 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~ 387 (426)
.|+|+.|+||.|||. +|..++.. ..+.++|| .|.|+-..-++...+.++||+. .+.+.|++. +.+.
T Consensus 174 ~D~vi~r~dg~ptY~---fA~vVDD~-~~gITHVi--RG~D~l~~t~~Q~~L~~~Lg~~------~P~~~H~pl--~l~~ 239 (314)
T PF00749_consen 174 GDFVIRRSDGYPTYH---FAVVVDDH-LMGITHVI--RGEDLLSSTPRQILLYEALGWP------PPPYAHLPL--ILNE 239 (314)
T ss_dssp BTEEEESTTSEB-HH---HHHHHHHH-HTT-SEEE--EEGGGTTCHHHHHHHHHHCTSS------S-EEEEEEE--EEET
T ss_pred CchhccccccCcccc---cceeeccc-ccccCeEE--EccccccccHHHHHHHHHhCCC------CcceEeeee--eecC
Confidence 489999999999998 78888887 57999995 9999987766666899999994 378999954 8889
Q ss_pred CCccccccCCCce-eHHHHHHHHHHH--HHHHHHHhcc
Q 014355 388 DGKRLRTRFSEVV-RLVDLLDEAKNR--SKAVLIERGI 422 (426)
Q Consensus 388 ~g~kmSkR~G~~v-~L~dLlde~~~~--a~~~i~~~~~ 422 (426)
+|+|||||+|... .+.++.+....+ ....+..+|.
T Consensus 240 ~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~lG~ 277 (314)
T PF00749_consen 240 DGKKLSKRKGAKSIELGDYREWGDPPEATLNYLARLGW 277 (314)
T ss_dssp TSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHTTB
T ss_pred CCcEechhhccccccccccccCCCCHHHHHHHHHHhcC
Confidence 9999999999443 267776654333 5566666664
No 47
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.61 E-value=7.6e-15 Score=140.13 Aligned_cols=115 Identities=22% Similarity=0.238 Sum_probs=91.6
Q ss_pred HHHHHHHHHcCCceee----------eccccccCcHHHHHHHHHHCCCEEEeCCeEEEEecCCCCCeEEEecCCcccccc
Q 014355 254 KEFDKVYKRLRVDLEE----------KGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYAS 323 (426)
Q Consensus 254 ~~~~~~~~~Lgi~fd~----------~~Es~~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t 323 (426)
+.+.++++.||+..|. +..|.+.+...+++++|.++| ||.|||..
T Consensus 54 ~~i~~dL~wlGl~~d~~~~~~g~~~~~~QS~r~~~y~~~~~~L~~~g-------------------------dg~ptY~~ 108 (239)
T cd00808 54 EAILEALKWLGLDWDEGPDVGGPYGPYRQSERLEIYRKYAEKLLEKG-------------------------DGFPTYHL 108 (239)
T ss_pred HHHHHHHHHcCCCCCcCCccCCCCCCEeeeCCHHHHHHHHHHHHHcC-------------------------CCCccccc
Confidence 4666789999998864 223444456778889998877 89999995
Q ss_pred ccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHH
Q 014355 324 TDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 403 (426)
Q Consensus 324 ~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~ 403 (426)
|..++.. ..+++++ |.|.||..+-++...++++||+. .+.+.|+ .++.+.+|+|||||.|+ .+++
T Consensus 109 ---a~~vDD~-~~~ithV--iRG~D~~~~t~~q~~l~~aLg~~------~p~~~h~--pll~~~~g~KLSKR~~~-~~l~ 173 (239)
T cd00808 109 ---ANVVDDH-LMGITHV--IRGEEHLSSTPKQILLYEALGWE------PPKFAHL--PLILNPDGKKLSKRKGD-TSIS 173 (239)
T ss_pred ---HHHHhHH-hcCCCEE--EEChhhhhChHHHHHHHHHcCCC------CCceEee--ccccCCCCCcccCCCCC-ccHH
Confidence 5556766 5799999 59999999999999999999994 3678898 55888899999999996 7888
Q ss_pred HHHHH
Q 014355 404 DLLDE 408 (426)
Q Consensus 404 dLlde 408 (426)
++.++
T Consensus 174 ~lr~~ 178 (239)
T cd00808 174 DYREE 178 (239)
T ss_pred HHHHC
Confidence 87654
No 48
>PLN02627 glutamyl-tRNA synthetase
Probab=99.60 E-value=1.1e-14 Score=152.27 Aligned_cols=86 Identities=16% Similarity=0.189 Sum_probs=71.5
Q ss_pred CCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC
Q 014355 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (426)
Q Consensus 308 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~ 387 (426)
.|+||+|+||.|||. +|..++.. ..+.++|| .|.||-.--++...+.++|||. .+.+.|++ ++.++
T Consensus 224 ~D~Vi~R~DG~PtY~---fA~vVDD~-~mgITHVi--RG~D~l~nTpkQi~ly~aLg~~------~P~f~Hlp--li~~~ 289 (535)
T PLN02627 224 GDFVLLRSNGQPVYN---FCVAVDDA-TMGITHVI--RAEEHLPNTLRQALIYKALGFP------MPRFAHVS--LILAP 289 (535)
T ss_pred CCeEEEecCCCcccc---ccceeccc-ccCCcEEE--echhhhcChHHHHHHHHHcCCC------CCeEEEcc--ceeCC
Confidence 489999999999999 56666766 56899996 8999977766666999999995 36899995 49999
Q ss_pred CCccccccCCCceeHHHHHHH
Q 014355 388 DGKRLRTRFSEVVRLVDLLDE 408 (426)
Q Consensus 388 ~g~kmSkR~G~~v~L~dLlde 408 (426)
+|+|||||.| .+++.++.++
T Consensus 290 ~g~KLSKR~~-~~~v~~~r~~ 309 (535)
T PLN02627 290 DRSKLSKRHG-ATSVGQFREM 309 (535)
T ss_pred CCCccccccC-CccHHHHHHC
Confidence 9999999999 6788887664
No 49
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=99.57 E-value=3.8e-13 Score=150.79 Aligned_cols=132 Identities=20% Similarity=0.221 Sum_probs=100.4
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
..++..|....||+||+|||||+++.++.|+++|..|..|++|.+....+..|..+...++... ... +....
T Consensus 31 ~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~---~~~----g~~~~- 102 (861)
T TIGR00422 31 NKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKL---GAE----GKTKH- 102 (861)
T ss_pred CCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHh---ccc----CCchh-
Confidence 3467999999999999999999999999999999999999999999999999998876543210 000 00000
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeccc-----cccCcHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES-----FYNPYIP 280 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~Es-----~~~~~v~ 280 (426)
+ -|.++.++..+++++.+...+++.+++||+++||..+. .|...+.
T Consensus 103 -------------------~----------~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~ 153 (861)
T TIGR00422 103 -------------------D----------LGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVK 153 (861)
T ss_pred -------------------h----------CCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHH
Confidence 0 01112233445567778889999999999999986542 3456799
Q ss_pred HHHHHHHHCCCEEE
Q 014355 281 GVIDELSKQGLVEE 294 (426)
Q Consensus 281 ~vi~~L~~~g~~~~ 294 (426)
.++.+|.++|++|+
T Consensus 154 ~~F~~L~~~GlIy~ 167 (861)
T TIGR00422 154 EAFVRLYEKGLIYR 167 (861)
T ss_pred HHHHHHHHCCCeee
Confidence 99999999999987
No 50
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.55 E-value=3.5e-14 Score=135.22 Aligned_cols=167 Identities=16% Similarity=0.053 Sum_probs=120.4
Q ss_pred ecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHh
Q 014355 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 213 (426)
Q Consensus 134 ~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 213 (426)
=+.|.|||+||+||+|++++.+.+|| ++++...--+.|. ++...
T Consensus 5 RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDt----------------------D~~r~--------- 48 (240)
T cd09287 5 RFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDT----------------------DPRTK--------- 48 (240)
T ss_pred eCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcC----------------------CCCcc---------
Confidence 36899999999999999999999999 6777777777773 11000
Q ss_pred hcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceee-eccccccCcHHHHHHHHHHCCCE
Q 014355 214 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDELSKQGLV 292 (426)
Q Consensus 214 ~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~-~~Es~~~~~v~~vi~~L~~~g~~ 292 (426)
. ....+.+.+.++++.||+..|. ...|.+.+...+++++|.++|.+
T Consensus 49 ----~-----------------------------~~~~~~~~i~~dL~wLGl~~d~~~~qS~r~~~y~~~~~~Li~~G~a 95 (240)
T cd09287 49 ----R-----------------------------PDPEAYDMIPEDLEWLGVKWDEVVIASDRIELYYEYARKLIEMGGA 95 (240)
T ss_pred ----c-----------------------------chHHHHHHHHHHHHHcCCCCCCccchhccHHHHHHHHHHHHHcCCc
Confidence 0 0112224577899999997762 22355556778999999999999
Q ss_pred EEeCCeEEEEecCCCCCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCC
Q 014355 293 EESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDST 372 (426)
Q Consensus 293 ~~~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~ 372 (426)
|... ..| .++++ .|||. +|..++.. ..|.+++| .|.|+...-++...+.++||+.
T Consensus 96 Y~~~------~~~--~~~~i-----~ptY~---la~vVDD~-~~gIThVi--Rg~d~~~~t~~q~~l~~~Lg~~------ 150 (240)
T cd09287 96 YVHP------RTG--SKYRV-----WPTLN---FAVAVDDH-LLGVTHVL--RGKDHIDNTEKQRYIYEYFGWE------ 150 (240)
T ss_pred ccCc------ccC--CcEEE-----EEccc---cceeeecc-ccCCCeEE--echhhhhCCHHHHHHHHHcCCC------
Confidence 9610 011 23444 27777 56667766 56889985 8999888777777899999994
Q ss_pred CCcEEEEEeEEEEcCCCccccccCC
Q 014355 373 YPKASHVGFGLVLGEDGKRLRTRFS 397 (426)
Q Consensus 373 ~~~~~Hv~~g~v~~~~g~kmSkR~G 397 (426)
.+.+.|++. +.++ |.|||||++
T Consensus 151 ~P~~~H~pl--l~~~-~~kLSKR~~ 172 (240)
T cd09287 151 YPETIHWGR--LKIE-GGKLSTSKI 172 (240)
T ss_pred CCcEEeeee--ecCC-CCeeccccc
Confidence 478999955 7754 789999995
No 51
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.53 E-value=1.4e-13 Score=141.05 Aligned_cols=114 Identities=18% Similarity=0.354 Sum_probs=86.4
Q ss_pred EEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHHH
Q 014355 130 AVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEF 209 (426)
Q Consensus 130 V~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~ 209 (426)
++|--.-|.|+|++||||+.+++.+|+++|.+|..|++|......++.|+.+..-|... +
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~-----------g--------- 60 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQ-----------G--------- 60 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHT-----------T---------
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHc-----------C---------
Confidence 34556668999999999999999999999999999999999999999998887544210 0
Q ss_pred HHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec---cccccCcHHHHHHHH
Q 014355 210 YRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVIDEL 286 (426)
Q Consensus 210 y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~---Es~~~~~v~~vi~~L 286 (426)
.+| +++++.....|++.+++|||++|.+. +..|...+++++++|
T Consensus 61 ---------~~p------------------------~~~~~~~~~~~~~~~~~~~I~~D~F~rTt~~~h~~~v~~i~~~L 107 (391)
T PF09334_consen 61 ---------IDP------------------------EEFCDKYSAKFKELLEALNISYDRFIRTTDDRHKEFVQEIFKRL 107 (391)
T ss_dssp ---------S-H------------------------HHHHHHHHHHHHHHHHHTT---SEEEETTSHHHHHHHHHHHHHH
T ss_pred ---------CCH------------------------HHHHHHHHHHHHHHHHHcCCCCcceeCCCCHHHHHHHHHHHHHH
Confidence 111 24566677899999999999997553 345677899999999
Q ss_pred HHCCCEEEeC
Q 014355 287 SKQGLVEESQ 296 (426)
Q Consensus 287 ~~~g~~~~~d 296 (426)
.++|++|+.+
T Consensus 108 ~~~G~I~~~~ 117 (391)
T PF09334_consen 108 YDNGYIYKRE 117 (391)
T ss_dssp HHTTSEEEEE
T ss_pred HhcCceeecc
Confidence 9999999754
No 52
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.53 E-value=1.3e-13 Score=135.48 Aligned_cols=136 Identities=20% Similarity=0.205 Sum_probs=97.4
Q ss_pred HHHHHHHHHcCCceee--eccccccCcHHHHHHHHHHCCCEEEe---------------------CC-------------
Q 014355 254 KEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLVEES---------------------QG------------- 297 (426)
Q Consensus 254 ~~~~~~~~~Lgi~fd~--~~Es~~~~~v~~vi~~L~~~g~~~~~---------------------dG------------- 297 (426)
+.+.++|+.||+..|. +..|.+.+.-.+++++|.++|.+|.. +|
T Consensus 58 ~~I~~dL~wlGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~ 137 (299)
T PRK05710 58 DAILADLEWLGLHWDGPVLYQSQRHDAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPP 137 (299)
T ss_pred HHHHHHHHHCCCCCCCCceEeeccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCc
Confidence 4566788888888762 22344445567788888888887730 11
Q ss_pred eEEEEec-----------C--------CCCCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHH
Q 014355 298 ARVIFIE-----------G--------VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFS 358 (426)
Q Consensus 298 a~~~~~~-----------g--------~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~ 358 (426)
++-|+++ | .-.|+||+|+||.|||. +|..++.. ..|.++|| .|.|+-..-++...
T Consensus 138 ~iRlk~~~~~~~~~D~~~G~~~~~~~~~~~D~Vi~R~dg~ptY~---lA~vVDD~-~~gIThVv--RG~D~l~~t~~Q~~ 211 (299)
T PRK05710 138 AWRLRVPDAVIAFDDRLQGRQHQDLALAVGDFVLRRADGLFAYQ---LAVVVDDA-LQGVTHVV--RGADLLDSTPRQIY 211 (299)
T ss_pred eEEEEcCCCceEEEEecceeEeeCCCCCCCCEEEEecCCCcccc---chhHHhcc-cCCCCEEE--eChhhhhcCHHHHH
Confidence 1112221 1 12589999999999999 57778877 57999995 89988666555668
Q ss_pred HHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHH
Q 014355 359 AAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (426)
Q Consensus 359 ~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~d 404 (426)
+.++|||. .+.+.|+ .++.+.+|+|||||.| ..++++
T Consensus 212 l~~aLg~~------~P~y~H~--pll~~~~g~kLSKr~~-~~~i~~ 248 (299)
T PRK05710 212 LQQLLGLP------TPRYLHL--PLVLNADGQKLSKQNG-APALDA 248 (299)
T ss_pred HHHHcCCC------CCeEEEe--ecccCCCCCcccccCC-ccchhh
Confidence 99999994 4789999 4598899999999999 455655
No 53
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.51 E-value=5.3e-13 Score=140.45 Aligned_cols=239 Identities=16% Similarity=0.116 Sum_probs=128.5
Q ss_pred eEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHH
Q 014355 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (426)
Q Consensus 129 kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (426)
+++|+-.=+ |+|+.||||+|..+.+|.++|.+|..|++|..++..+|+-. ++ +.|.. .+ +
T Consensus 19 ~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~--------lR-Kvp~~--~p--------~ 78 (515)
T TIGR00467 19 LYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDP--------LR-KVYPF--LP--------E 78 (515)
T ss_pred eEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcc--------cc-ccccc--cc--------H
Confidence 688876555 99999999999999999999999999999999999999710 11 11110 00 0
Q ss_pred HHHHhhc-ccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-ccc-cCcHHHHHHH
Q 014355 209 FYRRSKN-RFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SFY-NPYIPGVIDE 285 (426)
Q Consensus 209 ~y~~~~~-~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-s~~-~~~v~~vi~~ 285 (426)
.|.++-. -+..- -||.- ....+.+.....|.+.++.|||++++.+- -.| ++...+.+..
T Consensus 79 ~~~~ylG~Pl~~v----------------pdp~g--~~~s~~~h~~~~~~~~l~~~gi~~e~~s~te~Y~sG~~~~~i~~ 140 (515)
T TIGR00467 79 ELETYLGMPLTRI----------------PDPEG--CKTSYAEHFLIPFLESLPVLGINPEFIRASKQYTSGLYASQIKI 140 (515)
T ss_pred HHHHhCCCcceec----------------CCCCC--CcHHHHHHHHHHHHHHHHHcCCeEEEEEHHHhhhcCChHHHHHH
Confidence 0111100 00000 01111 11345667778888999999999865432 233 3322222222
Q ss_pred HHHC-C--------CEE-EeCCeEE-EE--ec--CCC-CCeEEEecCCcccccc-------c-------------cHHHH
Q 014355 286 LSKQ-G--------LVE-ESQGARV-IF--IE--GVN-IPLIIVKSDGGFNYAS-------T-------------DLAAL 329 (426)
Q Consensus 286 L~~~-g--------~~~-~~dGa~~-~~--~~--g~~-~d~Vl~ksDG~~tY~t-------~-------------DiA~~ 329 (426)
..++ . +.- +....++ |. ++ |.. .+.+=+..+.+-+|.. . |.|+
T Consensus 141 ~L~~~~~I~~il~~~~~~~~~~~~~P~~pic~~cGrv~~~~~~~~~~~~v~Y~c~cG~~g~~~~~~g~~KL~WkvdW~~- 219 (515)
T TIGR00467 141 ALDHRKEISEILNEYRTSKLEENWYPISVFCENCGRDTTTVNNYDNEYSIEYSCECGNQESVDIYTGAIKLPWRVDWPA- 219 (515)
T ss_pred HHHhHHHHHHHHHHhcCCccCCCceeeeeecCCcCccCceEEEecCCceEEEEcCCCCEEEEeecCCCcccCCCCCcHh-
Confidence 1111 1 000 1111111 10 11 211 1111011111223321 1 2221
Q ss_pred HHHHhhcCCCeEEEEeeCCccc----cHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEE-EcCCCccccccCCCceeHHH
Q 014355 330 WYRLNEEKAEWIIYVTDVGQQL----HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLV-LGEDGKRLRTRFSEVVRLVD 404 (426)
Q Consensus 330 ~~r~~~~~~d~~i~V~g~~q~~----hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v-~~~~g~kmSkR~G~~v~L~d 404 (426)
|+...|.| +--+|.||+. |-.+...+.+.+|..+ |. ++.|++| ...+|+|||||+||++|++|
T Consensus 220 --RW~~lgV~--~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~---P~-----~~~ye~v~L~~~g~KMSKS~Gn~itl~d 287 (515)
T TIGR00467 220 --RWKIEKVT--FEPAGKDHAAAGGSYDTGVNIAKEIFQYSP---PV-----TVQYEWISLKGKGGKMSSSKGDVISVKD 287 (515)
T ss_pred --hHhhhCcc--cccCCCCccCccCCchhHHHHHHHHhCCCC---Cc-----CcEEEEEEEcCCCccccCCCCCCccHHH
Confidence 11122332 3347788876 5667655556897642 11 1234555 33567899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 014355 405 LLDEAKNRSKAVLI 418 (426)
Q Consensus 405 Llde~~~~a~~~i~ 418 (426)
+++++...+...+-
T Consensus 288 ll~~~~pdalR~~~ 301 (515)
T TIGR00467 288 VLEVYTPEITRFLF 301 (515)
T ss_pred HHHHcCHHHHHHHH
Confidence 99998887776654
No 54
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=9.4e-14 Score=144.12 Aligned_cols=83 Identities=23% Similarity=0.274 Sum_probs=69.4
Q ss_pred EEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCc
Q 014355 311 IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK 390 (426)
Q Consensus 311 Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~ 390 (426)
|+.|+||.|||. +|-.++.. ..|.+++| .|.||-..-++...+.++|||. .+.+.|+ +++++++|+
T Consensus 184 v~~r~dg~ptY~---favvvDD~-~mgITHvi--RG~d~~~nt~~q~~l~~~lg~~------~P~~~H~--~li~~~~g~ 249 (472)
T COG0008 184 VILRYDGYPTYN---FAVVVDDH-LMGITHVL--RGEDHLDNTPRQIWLYEALGWP------PPVYAHL--PLLLNEDGK 249 (472)
T ss_pred eeecCCCCcccc---eeeeechh-hcCCceEE--echhhccCCHHHHHHHHHcCCC------CCcEEEe--eeeecCCCC
Confidence 999999999998 45556665 46899996 8999988888888999999995 3789998 679999999
Q ss_pred cccccCCCceeHHHHHHH
Q 014355 391 RLRTRFSEVVRLVDLLDE 408 (426)
Q Consensus 391 kmSkR~G~~v~L~dLlde 408 (426)
|||||+| .+++.++.++
T Consensus 250 kLSKr~~-~~~~~~~~~~ 266 (472)
T COG0008 250 KLSKRKG-AVSIGEYRVE 266 (472)
T ss_pred eecCccC-ccccchhhhc
Confidence 9999999 8888765543
No 55
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.49 E-value=2.2e-13 Score=143.97 Aligned_cols=200 Identities=16% Similarity=0.079 Sum_probs=132.9
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHH
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (426)
+.+|+.- +.|+|||+|||||+|++++-+.+|| .|+....--++|.-.. +.
T Consensus 99 ~g~V~tR-FaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk----------------------~~-- 148 (567)
T PRK04156 99 KGKVVMR-FAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPR----------------------TK-- 148 (567)
T ss_pred CCeEEEE-eCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCC----------------------cc--
Confidence 4566655 8999999999999999999999998 4555555555663100 00
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eeccccccCcHHHHHHH
Q 014355 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDE 285 (426)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~Es~~~~~v~~vi~~ 285 (426)
. ....+.+.+.++++.||+..| ...-|.+.+...+++++
T Consensus 149 ------------R----------------------------~~~e~~~~I~edL~wLGl~wD~~~~qSdr~~~y~~~a~~ 188 (567)
T PRK04156 149 ------------R----------------------------PDPEAYDMILEDLKWLGVKWDEVVIQSDRLEIYYEYARK 188 (567)
T ss_pred ------------c----------------------------chHHHHHHHHHHHHHcCCCCCCccCcccCHHHHHHHHHH
Confidence 0 001112456667888888764 22235555566777788
Q ss_pred HHHCCCEEEe----------------------------------------CCeEEEEecCC-----C--CCeEEEecCCc
Q 014355 286 LSKQGLVEES----------------------------------------QGARVIFIEGV-----N--IPLIIVKSDGG 318 (426)
Q Consensus 286 L~~~g~~~~~----------------------------------------dGa~~~~~~g~-----~--~d~Vl~ksDG~ 318 (426)
|.++|.+|.. +|..++++..+ . .|+|+.|.+++
T Consensus 189 Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~rD~v~~R~~~~ 268 (567)
T PRK04156 189 LIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKT 268 (567)
T ss_pred HHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCccccEEEEEcCC
Confidence 8888877751 12334444321 1 46888887432
Q ss_pred ---------cccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC
Q 014355 319 ---------FNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG 389 (426)
Q Consensus 319 ---------~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g 389 (426)
..|.|=|+|..++.. ..|.+++| .|.+|..+-++...++++|||. .+.+.|+ ++++ .+|
T Consensus 269 ~h~~~Gd~~~i~PtY~fA~~VDD~-l~GITHVi--Rg~d~~~~t~~Q~~l~~~Lg~~------~P~~~H~--~~L~-~~g 336 (567)
T PRK04156 269 PHPRVGDKYRVWPTYNFAVAVDDH-LLGVTHVL--RGKDHIDNTEKQRYIYDYFGWE------YPETIHY--GRLK-IEG 336 (567)
T ss_pred CccccCCCeEEEEEeccCceeeec-CCCCCeEE--cccccccChHHHHHHHHHcCCC------CceEEEc--ceec-CCC
Confidence 224444677666665 56899996 8889988877777899999994 3789998 5577 478
Q ss_pred ccccccC-------C--------CceeHHHHHHH
Q 014355 390 KRLRTRF-------S--------EVVRLVDLLDE 408 (426)
Q Consensus 390 ~kmSkR~-------G--------~~v~L~dLlde 408 (426)
.|||||+ | +..|+..|.+.
T Consensus 337 ~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrr 370 (567)
T PRK04156 337 FVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRR 370 (567)
T ss_pred ceeecccchhccccCccccccCCchHHHHHHHHc
Confidence 8999999 5 34577776655
No 56
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.49 E-value=1.9e-13 Score=129.72 Aligned_cols=114 Identities=20% Similarity=0.129 Sum_probs=92.1
Q ss_pred HHHHHHHHHHcCCceee--eccccccCcHHHHHHHHHHCCCEEEeCCeEEEEecCCCCCeEEEecCCccccccccHHHHH
Q 014355 253 RKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALW 330 (426)
Q Consensus 253 ~~~~~~~~~~Lgi~fd~--~~Es~~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~ 330 (426)
.+.+.++++.||+..|. +..|.+.+.-.+.+++|.++| |.|||. +|..+
T Consensus 53 ~~~I~~dL~wlGl~wd~~~~~QS~r~~~y~~~~~~L~~~g--------------------------g~p~Y~---la~vv 103 (230)
T cd00418 53 VESILEDLKWLGLDWDEGPYRQSDRFDLYRAYAEELIKKG--------------------------GYPLYN---FVHPV 103 (230)
T ss_pred HHHHHHHHHHcCCCCCCCeeehhcCHHHHHHHHHHHHHcC--------------------------CCcccc---ccccc
Confidence 45677899999999863 334555566788999999988 889998 57777
Q ss_pred HHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHH
Q 014355 331 YRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLD 407 (426)
Q Consensus 331 ~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLld 407 (426)
+.. ..|.+++| .|.||-..-++...++++||+. .+.+.|+ .++.+.+|+|||||.|+ .+++++.+
T Consensus 104 DD~-~~gIThVi--RG~D~l~st~~q~~l~~~Lg~~------~P~~~H~--pll~~~~g~KLSKr~~~-~~i~~~r~ 168 (230)
T cd00418 104 DDA-LMGITHVL--RGEDHLDNTPIQDWLYEALGWE------PPRFYHF--PRLLLEDGTKLSKRKLN-TTLRALRR 168 (230)
T ss_pred ccc-ccCCCEEE--ECHhhhhchHHHHHHHHHcCCC------CCeEEEe--eeeeCCCCCCccCcCCC-cCHHHHHH
Confidence 776 57999995 8999988877777999999994 4689998 55999999999999995 78988765
No 57
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.47 E-value=1.6e-12 Score=143.67 Aligned_cols=116 Identities=14% Similarity=0.283 Sum_probs=94.0
Q ss_pred CceEEEEecCCCcCCCccchhHHHH-HHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRST-IIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsa-iiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
.++++|--.-|+|+|++||||++++ +..|+++|.+|..|++|......++.|+.+..-+.. .+
T Consensus 16 ~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~-----------~g----- 79 (801)
T PLN02610 16 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALE-----------EN----- 79 (801)
T ss_pred CCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHH-----------cC-----
Confidence 4579999999999999999999975 558999999999999999999999999887643310 00
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc---ccccCcHHHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE---SFYNPYIPGV 282 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E---s~~~~~v~~v 282 (426)
. .| +++++.+.+.|++++++|||+||.+.. ..|...++++
T Consensus 80 -------------~------------------~p------~e~~d~~~~~~~~~~~~l~i~~D~f~rT~~~~h~~~vq~~ 122 (801)
T PLN02610 80 -------------C------------------TP------KEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAI 122 (801)
T ss_pred -------------C------------------CH------HHHHHHHHHHHHHHHHHcCCccccCccCCCHHHHHHHHHH
Confidence 0 11 345666677889999999999985532 3466789999
Q ss_pred HHHHHHCCCEEEe
Q 014355 283 IDELSKQGLVEES 295 (426)
Q Consensus 283 i~~L~~~g~~~~~ 295 (426)
+.+|.++|++|+.
T Consensus 123 f~~L~~~G~Iy~~ 135 (801)
T PLN02610 123 FKKLMENNWLSEN 135 (801)
T ss_pred HHHHHHCCCEEEe
Confidence 9999999999974
No 58
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=4.3e-11 Score=130.61 Aligned_cols=130 Identities=20% Similarity=0.272 Sum_probs=101.9
Q ss_pred ceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHH
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (426)
++..|.-..|||||.|||||+-+..+-|+|+|..|.+||+|...-+.+++|.......+-...
T Consensus 33 ~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~----------------- 95 (877)
T COG0525 33 PPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLA----------------- 95 (877)
T ss_pred CCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHH-----------------
Confidence 569999999999999999999999999999999999999999999999999777655431100
Q ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccc-----cCcHHHH
Q 014355 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFY-----NPYIPGV 282 (426)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~Es~~-----~~~v~~v 282 (426)
++...+.+ ..|+ +.++..+++.+.+...+.+.+.+||+++||..|.+. +..|+++
T Consensus 96 ---~~g~~r~d-------~gRe----------~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~ 155 (877)
T COG0525 96 ---AEGITRHD-------LGRE----------EFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEA 155 (877)
T ss_pred ---HcCCCccc-------cCHH----------HHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHH
Confidence 00000000 1122 223455667788999999999999999999888554 4579999
Q ss_pred HHHHHHCCCEEE
Q 014355 283 IDELSKQGLVEE 294 (426)
Q Consensus 283 i~~L~~~g~~~~ 294 (426)
+-+|.++|++|+
T Consensus 156 Fv~Ly~~GlIYr 167 (877)
T COG0525 156 FVRLYEKGLIYR 167 (877)
T ss_pred HHHHHHCCceee
Confidence 999999999997
No 59
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=99.26 E-value=4.4e-11 Score=125.23 Aligned_cols=86 Identities=16% Similarity=0.062 Sum_probs=62.0
Q ss_pred CCeEEEEecCC-------CCCeEEEecCCc------------cccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHH
Q 014355 296 QGARVIFIEGV-------NIPLIIVKSDGG------------FNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMV 356 (426)
Q Consensus 296 dGa~~~~~~g~-------~~d~Vl~ksDG~------------~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~ 356 (426)
+|..++++..+ -.|.|+.|+||+ |||. +|..++.. ..|.+++| .|.||..+-++.
T Consensus 147 ~~~~~lR~K~d~~~~n~~~~D~Vi~R~d~~~h~~~Gd~~~~~PtY~---fA~~VDD~-l~gITHvi--Rg~E~~~~t~~q 220 (523)
T PLN03233 147 GGAWCLRAKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAYKAYPTYD---LACPIVDS-IEGVTHAL--RTTEYDDRDAQF 220 (523)
T ss_pred CCCeEEEEeCcccCCCCCCcCCEEEEEcCCcccccCCcccceeccC---Cceeeecc-ccCCCeEE--echhhhcCCHHH
Confidence 35566665532 147899999986 5554 56666665 46899995 899998888777
Q ss_pred HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccC
Q 014355 357 FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF 396 (426)
Q Consensus 357 ~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~ 396 (426)
..++++||+. .+.+ |. |+.+. ..|.|||||+
T Consensus 221 ~~l~~aLg~~------~P~~-~~-f~rln-~~~~kLSKR~ 251 (523)
T PLN03233 221 FWIQKALGLR------RPRI-HA-FARMN-FMNTVLSKRK 251 (523)
T ss_pred HHHHHHhCCC------CCee-ee-eEEEC-CCCCcccccC
Confidence 7999999994 3455 44 56555 5688999997
No 60
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.4e-10 Score=116.19 Aligned_cols=97 Identities=20% Similarity=0.177 Sum_probs=71.1
Q ss_pred CeEEEEecCCCCCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcE
Q 014355 297 GARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKA 376 (426)
Q Consensus 297 Ga~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~ 376 (426)
|.++..++....|.||+||||-|||.. |..++.. ..+..++| .|.++----.++..+.+++||.+ +++
T Consensus 201 G~v~~~~d~~~gD~VvmKSDgfPTYHf---AnVVDDh-~M~IsHVi--RGeEWlpST~KH~lLYkAfgW~p------PkF 268 (524)
T KOG1149|consen 201 GKVNHNVDSNEGDPVVMKSDGFPTYHF---ANVVDDH-LMGISHVI--RGEEWLPSTLKHILLYKAFGWQP------PKF 268 (524)
T ss_pred hhhhccccccCCCcEEEecCCCcceee---eeeecch-hcchhhee--ecchhccccHHHHHHHHHhCCCC------Cce
Confidence 333333332346899999999999994 4444544 45777886 78877555555558889999963 689
Q ss_pred EEEEeEEEEcCCCccccccCCCceeHHHHHHH
Q 014355 377 SHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDE 408 (426)
Q Consensus 377 ~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde 408 (426)
.|++. +.+++|+|+|||.| -+++..+.++
T Consensus 269 aHlpL--l~n~d~sKLSKRqg-D~~vs~~~e~ 297 (524)
T KOG1149|consen 269 AHLPL--LLNPDGSKLSKRQG-DASVSHYREQ 297 (524)
T ss_pred eeeee--eecCCcchhhhhcC-cchHHHHHHc
Confidence 99965 88899999999999 5667776655
No 61
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=99.18 E-value=4.1e-10 Score=126.61 Aligned_cols=134 Identities=18% Similarity=0.203 Sum_probs=100.1
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
.+++.+|....||+||.|||||+++.++.|+++|..|..||+|......+..|..+...++..
T Consensus 34 ~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~----------------- 96 (874)
T PRK05729 34 SKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQ----------------- 96 (874)
T ss_pred CCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHH-----------------
Confidence 345699999999999999999999999999999999999999999999999997655333210
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeccc-----cccCcHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES-----FYNPYIP 280 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~Es-----~~~~~v~ 280 (426)
+...+. ++ .+..+ ++.++..+++++.+...+++.+++||+.+||..+. .|...+.
T Consensus 97 ----l~~~g~----~~--~~~~r----------e~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~ 156 (874)
T PRK05729 97 ----LAAEGK----SR--HDLGR----------EKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVR 156 (874)
T ss_pred ----HHhcCC----Ch--HHCCH----------HHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHH
Confidence 000000 00 00011 12233445667888889999999999999986543 3456799
Q ss_pred HHHHHHHHCCCEEEeC
Q 014355 281 GVIDELSKQGLVEESQ 296 (426)
Q Consensus 281 ~vi~~L~~~g~~~~~d 296 (426)
+++.+|.++|++|+..
T Consensus 157 ~~F~~L~~~GlIyr~~ 172 (874)
T PRK05729 157 EVFVRLYEKGLIYRGK 172 (874)
T ss_pred HHHHHHHHCCCEeecC
Confidence 9999999999999844
No 62
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=99.18 E-value=2e-10 Score=121.61 Aligned_cols=75 Identities=11% Similarity=0.003 Sum_probs=58.7
Q ss_pred CCeEEEecC------------CccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCc
Q 014355 308 IPLIIVKSD------------GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPK 375 (426)
Q Consensus 308 ~d~Vl~ksD------------G~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~ 375 (426)
.|.|+.|.+ |.|||. +|..++.. ..|.+++| .|.|+..+-++...++++|||. .+.
T Consensus 208 rD~Vl~R~~~~~h~rtGdk~dgyPtYd---fA~vVDD~-l~gITHvl--Rg~E~l~~tp~q~~L~~aLg~~------~P~ 275 (601)
T PTZ00402 208 RDPVIYRVNLTPHARQGTKYKAYPTYD---FCCPIIDS-VEGVTHAL--RTNEYHDRNDQYYWFCDALGIR------KPI 275 (601)
T ss_pred cCCEEEEEcCCcccccCCCCceeeccC---cceeeEcc-ccCCceEe--echhhhhCcHHHHHHHHHhCCC------Cce
Confidence 377888854 667776 56656655 46899995 8999988888877999999994 468
Q ss_pred EEEEEeEEEEcCCCccccccCC
Q 014355 376 ASHVGFGLVLGEDGKRLRTRFS 397 (426)
Q Consensus 376 ~~Hv~~g~v~~~~g~kmSkR~G 397 (426)
+.|++ + ++.+|.+||||++
T Consensus 276 ~~h~~--r-Ln~~g~kLSKRkl 294 (601)
T PTZ00402 276 VEDFS--R-LNMEYSVMSKRKL 294 (601)
T ss_pred EEEEe--e-EcCCCCcccccCC
Confidence 99985 4 4578999999998
No 63
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.18 E-value=2.3e-10 Score=108.86 Aligned_cols=117 Identities=12% Similarity=-0.036 Sum_probs=82.2
Q ss_pred HHHHHHHHHHcCCcee-eeccccccCcHHHHHHHHHHCCCEEEeCCeEEEEecCCCCCeEEEecCCccccccccHHHHHH
Q 014355 253 RKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWY 331 (426)
Q Consensus 253 ~~~~~~~~~~Lgi~fd-~~~Es~~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~ 331 (426)
.+.+.++++.||+..| ....|.+.+.-.+++++|.++|.+|..- .+| .+.++ .|||. +|..++
T Consensus 53 ~~~I~~dL~wlGl~wD~~~~QS~r~~~Y~~~~~~L~~~g~aY~~~------~~~--~~~~i-----~ptY~---lA~vVD 116 (238)
T cd00807 53 VDSIKEDVKWLGIKPYKVTYASDYFDQLYEYAEQLIKKGKAYVHH------RTG--DKWCI-----YPTYD---FAHPIV 116 (238)
T ss_pred HHHHHHHHHHcCCCCCCceecccCHHHHHHHHHHHHHcCCeecCC------CCC--CCEEE-----Eeccc---cceEee
Confidence 3567789999999986 2223555566789999999999999821 011 12233 37776 577777
Q ss_pred HHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCC
Q 014355 332 RLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFS 397 (426)
Q Consensus 332 r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G 397 (426)
.. ..|.+++| .|.|+-..-++...+.++||+. .+.+.|. +.+ +.+|.|||||.|
T Consensus 117 D~-~~gIThVv--RG~D~l~~t~~Q~~l~~aLg~~------~P~~~~~--~hl-n~~g~kLSKR~~ 170 (238)
T cd00807 117 DS-IEGITHSL--CTLEFEDRRPSYYWLCDALRLY------RPHQWEF--SRL-NLTYTVMSKRKL 170 (238)
T ss_pred cc-ccCCCeEE--echhhhcCCHHHHHHHHHcCCC------CCceeEE--EEE-CCCCCCccCcCc
Confidence 76 57999995 8999877766666899999994 2443332 334 578999999996
No 64
>PLN02943 aminoacyl-tRNA ligase
Probab=99.16 E-value=3e-10 Score=128.32 Aligned_cols=133 Identities=14% Similarity=0.170 Sum_probs=100.7
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
.+++.+|....||+||+|||||+++.++.|+++|..|..||+|......+..|..+...++..
T Consensus 86 ~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~----------------- 148 (958)
T PLN02943 86 GGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKM----------------- 148 (958)
T ss_pred CCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHH-----------------
Confidence 456699999999999999999999999999999999999999999999999998776554211
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeccc-----cccCcHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES-----FYNPYIP 280 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~Es-----~~~~~v~ 280 (426)
+...+. ++ .+..+ ++.++..+++.+.+...+++.+++||+.+||..+- .|...+.
T Consensus 149 ----l~~~~~----~~--~~~~r----------e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~ 208 (958)
T PLN02943 149 ----LASEGI----KR--TDLGR----------DEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVV 208 (958)
T ss_pred ----HHHcCC----Ch--hhCCH----------HHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHH
Confidence 000000 00 00011 12233445667778889999999999999996553 3456799
Q ss_pred HHHHHHHHCCCEEEe
Q 014355 281 GVIDELSKQGLVEES 295 (426)
Q Consensus 281 ~vi~~L~~~g~~~~~ 295 (426)
+++.+|.++|++|+.
T Consensus 209 ~~F~~l~~~Gliyr~ 223 (958)
T PLN02943 209 EAFVRLHEKGLIYQG 223 (958)
T ss_pred HHHHHHHHCCCEEec
Confidence 999999999999873
No 65
>PLN02381 valyl-tRNA synthetase
Probab=99.15 E-value=6.6e-10 Score=126.52 Aligned_cols=133 Identities=18% Similarity=0.231 Sum_probs=100.8
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHH-HHhhCCCCCccccccHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEY-LFEKFPNSEDANETAIG 204 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~-~~~~~~~~~~~~~~~i~ 204 (426)
.+++..|....||+||+|||||+++.++.|+++|..|..||+|.+....+..|..+...++. +... .+....
T Consensus 126 ~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~-------~~~~~~ 198 (1066)
T PLN02381 126 SKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRE-------RHLTRH 198 (1066)
T ss_pred CCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhh-------cCCChh
Confidence 35668999999999999999999999999999999999999999999999999888654421 0000 000000
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeccc-----cccCcH
Q 014355 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES-----FYNPYI 279 (426)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~Es-----~~~~~v 279 (426)
+. |-++.++..+++++.+...+++.+++||+.+||..+- .|...+
T Consensus 199 --------------------~~----------~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v 248 (1066)
T PLN02381 199 --------------------DI----------GREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAV 248 (1066)
T ss_pred --------------------hC----------CHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHH
Confidence 00 1112233455677788889999999999999986653 344679
Q ss_pred HHHHHHHHHCCCEEEe
Q 014355 280 PGVIDELSKQGLVEES 295 (426)
Q Consensus 280 ~~vi~~L~~~g~~~~~ 295 (426)
..++.+|.++|++|+.
T Consensus 249 ~~~F~~L~~~GlIyr~ 264 (1066)
T PLN02381 249 TEAFVRLYKEGLIYRD 264 (1066)
T ss_pred HHHHHHHHHCCCEEec
Confidence 9999999999999973
No 66
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=99.15 E-value=9.3e-10 Score=125.24 Aligned_cols=134 Identities=19% Similarity=0.226 Sum_probs=100.8
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHH-hhCCCCCccccccHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLF-EKFPNSEDANETAIG 204 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~-~~~~~~~~~~~~~i~ 204 (426)
.+++.+|....|||||+|||||+++.++.|+++|..|..|++|......+..|..+...++... .+ .+....
T Consensus 58 ~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~-------~~~~~~ 130 (995)
T PTZ00419 58 SGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKE-------ENKTRH 130 (995)
T ss_pred CCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHh-------cCCChH
Confidence 4567999999999999999999999999999999999999999999999999986654332110 00 000000
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeccc-----cccCcH
Q 014355 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES-----FYNPYI 279 (426)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~Es-----~~~~~v 279 (426)
+ -|.++.++..+++.+.+...+++.+++||+.+||..+- .|...+
T Consensus 131 --------------------~----------~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v 180 (995)
T PTZ00419 131 --------------------D----------LGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAV 180 (995)
T ss_pred --------------------H----------cCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHH
Confidence 0 01122334445667778889999999999999986542 234579
Q ss_pred HHHHHHHHHCCCEEEeC
Q 014355 280 PGVIDELSKQGLVEESQ 296 (426)
Q Consensus 280 ~~vi~~L~~~g~~~~~d 296 (426)
.+++.+|.++|++|+..
T Consensus 181 ~~~F~~l~~~Gliyr~~ 197 (995)
T PTZ00419 181 KEAFVRLYEDGLIYRDT 197 (995)
T ss_pred HHHHHHHHHCCCEEecc
Confidence 99999999999999844
No 67
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=99.15 E-value=6.3e-10 Score=126.74 Aligned_cols=133 Identities=19% Similarity=0.241 Sum_probs=100.1
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
++.+..|--..|||||+|||||+++.++.|+++|..|..||+|.+....++.|.++...++.- .... .+....
T Consensus 46 ~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~---l~~~---~~~~~~- 118 (1052)
T PRK14900 46 TRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKE---LKKT---EKKSRH- 118 (1052)
T ss_pred CCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHH---hhhc---cCCChh-
Confidence 345688999999999999999999999999999999999999999999999999887544211 0000 000000
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecccc-----ccCcHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESF-----YNPYIP 280 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~Es~-----~~~~v~ 280 (426)
+. |.++.++..+++.+.+...+++.+++||+.+||..+.+ |...+.
T Consensus 119 -------------------~~----------~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~ 169 (1052)
T PRK14900 119 -------------------DL----------GREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVR 169 (1052)
T ss_pred -------------------hC----------CHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHH
Confidence 00 11122334455677788899999999999999876533 445799
Q ss_pred HHHHHHHHCCCEEE
Q 014355 281 GVIDELSKQGLVEE 294 (426)
Q Consensus 281 ~vi~~L~~~g~~~~ 294 (426)
.++.+|.++|++|+
T Consensus 170 ~~F~~L~~~Gliyr 183 (1052)
T PRK14900 170 EVFVRLHEEGLIYR 183 (1052)
T ss_pred HHHHHHHHCCCEEe
Confidence 99999999999987
No 68
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=99.14 E-value=6.2e-10 Score=124.32 Aligned_cols=119 Identities=19% Similarity=0.206 Sum_probs=93.1
Q ss_pred eEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHH
Q 014355 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (426)
Q Consensus 129 kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (426)
.++++ .-|+|+|.|||||+|+.+++|+++|.+|..||+|......++.|..+...+.. . +
T Consensus 31 ~~v~~-~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~---~--------g-------- 90 (842)
T TIGR00396 31 YYILD-MFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIK---R--------G-------- 90 (842)
T ss_pred EEEEc-CCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHH---c--------C--------
Confidence 35555 59999999999999999999999999999999999999999999877643210 0 0
Q ss_pred HHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHHHH
Q 014355 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGVI 283 (426)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-----s~~~~~v~~vi 283 (426)
..| ++++....+.+++.+++||+.+||..+ ..|...++.++
T Consensus 91 ----------~~p------------------------~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F 136 (842)
T TIGR00396 91 ----------IHP------------------------AKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIF 136 (842)
T ss_pred ----------CCH------------------------HHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHH
Confidence 001 134566678889999999999988543 23456789999
Q ss_pred HHHHHCCCEEEeCCeEEE
Q 014355 284 DELSKQGLVEESQGARVI 301 (426)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~ 301 (426)
.+|.++|++|+.+.-+.+
T Consensus 137 ~~L~~kGliy~~~~~v~w 154 (842)
T TIGR00396 137 LELFEKGLAYVKEADVNW 154 (842)
T ss_pred HHHHHCCCeEeeccceEE
Confidence 999999999987654443
No 69
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.13 E-value=3.7e-10 Score=119.49 Aligned_cols=187 Identities=16% Similarity=0.093 Sum_probs=119.3
Q ss_pred ceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHH
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (426)
.+|+.=| .|+|||+|||||+|++++-+.+|| .|+....--++|.- |. .
T Consensus 92 ~~vvtRF-aPsPtG~LHiGharaalln~~~Ar-----~~~G~~iLRidDTD--------------p~----R-------- 139 (560)
T TIGR00463 92 GEVVMRF-APNPSGPLHIGHARAAILNQYFAK-----KYKGKLIIRFDDTD--------------PR----R-------- 139 (560)
T ss_pred CeeEEEe-CCCCCCCccHHHHHHHHHHHHHHH-----hcCCEEEEEeCcCC--------------cc----c--------
Confidence 4555544 799999999999999999988886 23344444445520 00 0
Q ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eeccccccCcHHHHHHHH
Q 014355 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDEL 286 (426)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~Es~~~~~v~~vi~~L 286 (426)
. ...+.+.|.++++.||+..| ....|.|.+...+++++|
T Consensus 140 -----------~-----------------------------~~e~~~~I~edL~wLGi~~d~~~~qSd~~~~y~~~a~~L 179 (560)
T TIGR00463 140 -----------V-----------------------------KPEAYDMILEDLDWLGVKGDEVVYQSDRIEEYYDYCRKL 179 (560)
T ss_pred -----------c-----------------------------cHHHHHHHHHHHHHcCCCCCccccccccHHHHHHHHHHH
Confidence 0 01123455667777787764 223455556667777777
Q ss_pred HHCCCEEEe----------------------------------------CCeEEEEecCC-------CCCeEEEecCCcc
Q 014355 287 SKQGLVEES----------------------------------------QGARVIFIEGV-------NIPLIIVKSDGGF 319 (426)
Q Consensus 287 ~~~g~~~~~----------------------------------------dGa~~~~~~g~-------~~d~Vl~ksDG~~ 319 (426)
+++|.+|.. +|..++++.-+ -.|.|+.|.++++
T Consensus 180 i~~G~AY~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~lR~K~d~~~~n~~~rD~V~~R~~~~~ 259 (560)
T TIGR00463 180 IEMGKAYVCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVVRAKTDYKHKNPAIRDWVIFRINKTP 259 (560)
T ss_pred HHcCCceeecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEECCCcCCCccccCcEEEEecCCC
Confidence 777777641 23335554311 1378899988754
Q ss_pred c---------cccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCc
Q 014355 320 N---------YASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK 390 (426)
Q Consensus 320 t---------Y~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~ 390 (426)
- |.|=|+|..++.. ..|.+++| .|.|+..--++...+.+++|+. .+.+.|++ ++.+..|.
T Consensus 260 h~~~Gd~~~~~PtYdfA~~VDD~-l~gITHvi--Rg~E~~~nT~rq~yl~~~lg~~------~P~~~h~~--~l~~~~~~ 328 (560)
T TIGR00463 260 HPRTGDKYKVYPTMDFSVPIDDH-LLGVTHVL--RGKDHIDNERKQQYIYMYFGWE------LPEFIHWG--RLKINDVR 328 (560)
T ss_pred ccccCCEEEEEeccccceEeecc-cCCCCeEE--echhhhcCCHHHHHHHHHcCCC------CCeEEEEc--ceecCCCc
Confidence 3 4444567666665 46899996 7888766334444677888984 36899985 48888888
Q ss_pred cccccCC
Q 014355 391 RLRTRFS 397 (426)
Q Consensus 391 kmSkR~G 397 (426)
++|||+.
T Consensus 329 kLskk~k 335 (560)
T TIGR00463 329 TLSTSSK 335 (560)
T ss_pred Eecchhh
Confidence 8998764
No 70
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=99.12 E-value=7.3e-10 Score=123.33 Aligned_cols=121 Identities=21% Similarity=0.235 Sum_probs=94.4
Q ss_pred ceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHH
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (426)
+.++++ .-|+|+|+|||||+|+.++.|+++|..|..||+|......++.|..+...+.. .
T Consensus 33 ~~~i~~-~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~-----------~-------- 92 (805)
T PRK00390 33 KYYVLD-MFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIK-----------T-------- 92 (805)
T ss_pred CEEEEc-cCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHH-----------c--------
Confidence 334444 35999999999999999999999999999999999999999999887643210 0
Q ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHHH
Q 014355 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGV 282 (426)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-----s~~~~~v~~v 282 (426)
+ ..| +++++...+.+++.+++||+.+||..+ ..|...+.++
T Consensus 93 ------g----~~~------------------------~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~ 138 (805)
T PRK00390 93 ------G----THP------------------------AEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWI 138 (805)
T ss_pred ------C----CCH------------------------HHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHH
Confidence 0 000 235566678899999999999997433 3455789999
Q ss_pred HHHHHHCCCEEEeCCeEEEE
Q 014355 283 IDELSKQGLVEESQGARVIF 302 (426)
Q Consensus 283 i~~L~~~g~~~~~dGa~~~~ 302 (426)
+.+|.++|++|+.+.-+++.
T Consensus 139 f~~L~~~Gliy~~~~~v~wc 158 (805)
T PRK00390 139 FLKLYEKGLAYRKESPVNWC 158 (805)
T ss_pred HHHHHHCCCEEEecCEEEec
Confidence 99999999999987665553
No 71
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=99.12 E-value=2.9e-10 Score=122.94 Aligned_cols=133 Identities=21% Similarity=0.288 Sum_probs=93.9
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
+.++..|-...||++|+||+||++|.++.|+++|..+..||+|......+-.|..+...+.. +.+... ..
T Consensus 21 ~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek---~l~~~~---~~---- 90 (601)
T PF00133_consen 21 NKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEK---KLGIKE---KK---- 90 (601)
T ss_dssp TSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHH---HTTTTS---HH----
T ss_pred CCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHH---hhcccc---cc----
Confidence 46788899999999999999999999999999999999999999999999999999865432 111100 00
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-----s~~~~~v~ 280 (426)
. ...+ |.++.++..+++++...+.+++.+++||+.+||..+ ..|...+.
T Consensus 91 ------~-~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~ 144 (601)
T PF00133_consen 91 ------D-RKDL-------------------GREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVW 144 (601)
T ss_dssp ------H-CSCS-------------------THHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHH
T ss_pred ------c-cccc-------------------ccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHH
Confidence 0 0001 112223344567778889999999999999998644 23456799
Q ss_pred HHHHHHHHCCCEEE
Q 014355 281 GVIDELSKQGLVEE 294 (426)
Q Consensus 281 ~vi~~L~~~g~~~~ 294 (426)
.++.+|.++|++|+
T Consensus 145 ~~F~~l~~kglIyr 158 (601)
T PF00133_consen 145 WQFKKLYEKGLIYR 158 (601)
T ss_dssp HHHHHHHHTTSEEE
T ss_pred HHHHHHHhcCcEEe
Confidence 99999999999997
No 72
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=99.09 E-value=1.6e-09 Score=114.07 Aligned_cols=89 Identities=11% Similarity=-0.043 Sum_probs=61.1
Q ss_pred CCeEEEEecC----CC---CCeEEEec-------CC-----ccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHH
Q 014355 296 QGARVIFIEG----VN---IPLIIVKS-------DG-----GFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMV 356 (426)
Q Consensus 296 dGa~~~~~~g----~~---~d~Vl~ks-------DG-----~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~ 356 (426)
+|..+++..- .+ .|.|+.|+ +| .|||. .|..++.. ..|.+++| .|.+|..+-++.
T Consensus 170 ~g~~vlR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYd---fA~~vdD~-l~gITHvl--Rg~E~~~~t~~~ 243 (554)
T PRK05347 170 EGSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYD---FAHCISDA-IEGITHSL--CTLEFEDHRPLY 243 (554)
T ss_pred CCcEEEEEEeeccCCCCCCCCCEEEEecCCCCCccCCceeeecCcC---ccceeecc-ccCCceEE--eccccccChHHH
Confidence 5666766541 11 37889988 47 66665 67666655 46899996 889999998888
Q ss_pred HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCC
Q 014355 357 FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE 398 (426)
Q Consensus 357 ~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~ 398 (426)
..++++||+... |....+.| + +.+|.+||||++.
T Consensus 244 ~~i~~alg~~~~--P~~~~F~r-----l-n~~~~~LSKRkl~ 277 (554)
T PRK05347 244 DWVLDNLPIPPH--PRQYEFSR-----L-NLTYTVMSKRKLK 277 (554)
T ss_pred HHHHHHcCCCCC--CceEEEEE-----E-CCCCCccccccch
Confidence 899999996210 11124444 3 3578899999964
No 73
>PLN02907 glutamate-tRNA ligase
Probab=99.09 E-value=7e-10 Score=121.26 Aligned_cols=182 Identities=14% Similarity=0.114 Sum_probs=112.6
Q ss_pred ceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHH
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (426)
++|+.= -.|+|||+|||||+|++++-..+|| ++-|-=+.| ++|.
T Consensus 212 ~~v~tR-FaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR---~eDT------------------------------ 255 (722)
T PLN02907 212 GKVCTR-FPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVR---FDDT------------------------------ 255 (722)
T ss_pred CceEEe-eCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---ecCC------------------------------
Confidence 355444 4799999999999999999999998 344433333 2231
Q ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceee-eccccccCcHHHHHHHH
Q 014355 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDEL 286 (426)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~-~~Es~~~~~v~~vi~~L 286 (426)
||+ +....+.+.+.++++.||+..|. ...|.|.+...+..++|
T Consensus 256 ------------dp~------------------------r~~~e~~~~I~~dl~wLG~~~d~~~~qS~r~~~y~~~a~~L 299 (722)
T PLN02907 256 ------------NPS------------------------KESDEFVENILKDIETLGIKYDAVTYTSDYFPQLMEMAEKL 299 (722)
T ss_pred ------------CCC------------------------cCChHHHHHHHHHHHHcCCCCCCcccccccHHHHHHHHHHH
Confidence 000 00111234555567777776641 22344444556666667
Q ss_pred HHCCCEEE----------------------------------------eCCeEEEEecCC----C---CCeEEEecCC--
Q 014355 287 SKQGLVEE----------------------------------------SQGARVIFIEGV----N---IPLIIVKSDG-- 317 (426)
Q Consensus 287 ~~~g~~~~----------------------------------------~dGa~~~~~~g~----~---~d~Vl~ksDG-- 317 (426)
+++|.+|. .+|..+++..-+ + .|.|+.|.||
T Consensus 300 i~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n~~~~D~v~~R~~~~~ 379 (722)
T PLN02907 300 IKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPTP 379 (722)
T ss_pred HHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCCCCcccCEEEEecCCc
Confidence 77776663 123344444311 1 3789999998
Q ss_pred ----------ccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC
Q 014355 318 ----------GFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (426)
Q Consensus 318 ----------~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~ 387 (426)
.|||. +|..++.. ..|.+++| .|.||..+-++...++++||+. .+...| |+.++ .
T Consensus 380 h~~~gd~~~~~PtY~---fa~~vdD~-~~gIThvl--Rg~e~~~~t~~q~~l~~~lg~~------~p~~~~--f~~l~-~ 444 (722)
T PLN02907 380 HHRIGSKYKVYPTYD---FACPFVDA-LEGVTHAL--RSSEYHDRNAQYYRILEDMGLR------KVHIWE--FSRLN-F 444 (722)
T ss_pred ccccCCccceeeccC---CceEEEcc-cCCCceEe--ecHhhhhChHHHHHHHHHcCCC------CCeeEE--EEEEc-C
Confidence 45554 55555544 46888885 8999988888888999999984 233333 34444 5
Q ss_pred CCccccccC
Q 014355 388 DGKRLRTRF 396 (426)
Q Consensus 388 ~g~kmSkR~ 396 (426)
+|.+||||+
T Consensus 445 ~~~~lSKR~ 453 (722)
T PLN02907 445 VYTLLSKRK 453 (722)
T ss_pred CCccccccc
Confidence 678999999
No 74
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=99.07 E-value=1.1e-09 Score=123.74 Aligned_cols=140 Identities=20% Similarity=0.262 Sum_probs=101.1
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
..++..|-..-|||||+|||||+|+.++.|+++|..|..|++|.+....+..|+.+...+.-+..+.+. .+
T Consensus 23 ~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~-------~~-- 93 (938)
T TIGR00395 23 DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDEL-------TI-- 93 (938)
T ss_pred CCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhh-------cc--
Confidence 356799999999999999999999999999999999999999999999999999998766433111000 00
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeccc-----cccCcHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES-----FYNPYIP 280 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~Es-----~~~~~v~ 280 (426)
+.|.... .+ ..++|.+.+ || +.+++.+...+++++++||+++||..+- .|...+.
T Consensus 94 --~~~~~~~-~i-~~~~i~~~~----------~~------~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~ 153 (938)
T TIGR00395 94 --KNYTEVH-AI-PREELLKFT----------DP------EYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIE 153 (938)
T ss_pred --ccchhhc-cC-CHHHHHhhc----------CH------HHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHH
Confidence 0011000 00 011111111 11 4556777788999999999999986542 3456799
Q ss_pred HHHHHHHHCCCEEE
Q 014355 281 GVIDELSKQGLVEE 294 (426)
Q Consensus 281 ~vi~~L~~~g~~~~ 294 (426)
..+.+|.++|++|+
T Consensus 154 ~~f~~L~e~G~iy~ 167 (938)
T TIGR00395 154 WQMNKLKELGLIVK 167 (938)
T ss_pred HHHHHHHHCCCEec
Confidence 99999999999987
No 75
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.05 E-value=2.5e-09 Score=121.34 Aligned_cols=133 Identities=20% Similarity=0.195 Sum_probs=101.0
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
++++..+....||+||.|||||+++.++.|+++|..+..||+|.+....+-.|..+...+.-. .+- . +...+.+
T Consensus 39 ~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~---l~~-~--~~~~i~~ 112 (975)
T PRK06039 39 GGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKE---LGI-S--GKKDIEE 112 (975)
T ss_pred CCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHH---hCc-c--cccchhh
Confidence 346789999999999999999999999999999999999999999999999999988665311 110 0 0011110
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeccc-----cccCcHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES-----FYNPYIP 280 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~Es-----~~~~~v~ 280 (426)
+ |.++.++..++++..+.+.+++.+++||+.+||..+- .|...+.
T Consensus 113 -----------~-------------------g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~ 162 (975)
T PRK06039 113 -----------Y-------------------GIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVW 162 (975)
T ss_pred -----------c-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHH
Confidence 0 1222333445566777788899999999999986542 3456789
Q ss_pred HHHHHHHHCCCEEE
Q 014355 281 GVIDELSKQGLVEE 294 (426)
Q Consensus 281 ~vi~~L~~~g~~~~ 294 (426)
.++.+|.++|++|+
T Consensus 163 ~~F~~l~~kGliyr 176 (975)
T PRK06039 163 WALKQLYDKGLLYK 176 (975)
T ss_pred HHHHHHHHCCCEEe
Confidence 99999999999997
No 76
>PLN02563 aminoacyl-tRNA ligase
Probab=99.03 E-value=2.8e-09 Score=119.89 Aligned_cols=120 Identities=20% Similarity=0.148 Sum_probs=90.9
Q ss_pred eEEEEecCCCcCCC-ccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHH
Q 014355 129 KAVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (426)
Q Consensus 129 kV~VE~~SpNp~~p-lHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (426)
+..|--.-|+|+|. |||||+|+.+++|+++|..|..||+|......+.+|..+...+.- .+
T Consensus 111 k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~-----------~g------- 172 (963)
T PLN02563 111 KFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIE-----------TG------- 172 (963)
T ss_pred CEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHH-----------cC-------
Confidence 34443344999996 999999999999999999999999999999999999887643210 00
Q ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHHH
Q 014355 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGV 282 (426)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-----s~~~~~v~~v 282 (426)
..| +..+......+++.+++||+.+||..+ ..|...++.+
T Consensus 173 -----------~~p------------------------~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~ 217 (963)
T PLN02563 173 -----------THP------------------------KITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWI 217 (963)
T ss_pred -----------CCh------------------------HHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHH
Confidence 001 112344557788999999999998654 3455679999
Q ss_pred HHHHHHCCCEEEeCCeEEE
Q 014355 283 IDELSKQGLVEESQGARVI 301 (426)
Q Consensus 283 i~~L~~~g~~~~~dGa~~~ 301 (426)
+.+|.++|++|+.+.-+.+
T Consensus 218 F~~L~~~GliY~~~~~v~w 236 (963)
T PLN02563 218 FLQLLKRGLAYQAEVPVNW 236 (963)
T ss_pred HHHHHHCCCEEeeeeeeee
Confidence 9999999999987644433
No 77
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.1e-09 Score=119.97 Aligned_cols=121 Identities=23% Similarity=0.253 Sum_probs=97.5
Q ss_pred ceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHH
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (426)
+|.-|=..=|.|.|.|||||.|+.++||++||..|..||+|..-+..+=+|..+...|...
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~------------------- 94 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKI------------------- 94 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHh-------------------
Confidence 4777777889999999999999999999999999999999999999999888776443211
Q ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHHH
Q 014355 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGV 282 (426)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-----s~~~~~v~~v 282 (426)
..+| ..+.....+.+++.+++||.++||..| ..|...++..
T Consensus 95 ----------~~~P------------------------~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~ 140 (814)
T COG0495 95 ----------GTDP------------------------AKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQ 140 (814)
T ss_pred ----------CCCh------------------------HHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHH
Confidence 0122 124555678889999999999999765 3566789999
Q ss_pred HHHHHHCCCEEEeCCeEEE
Q 014355 283 IDELSKQGLVEESQGARVI 301 (426)
Q Consensus 283 i~~L~~~g~~~~~dGa~~~ 301 (426)
+.+|.++|++|..+..+-+
T Consensus 141 F~kL~ekGL~y~~~~~Vnw 159 (814)
T COG0495 141 FLKLYEKGLAYRKEAPVNW 159 (814)
T ss_pred HHHHHHCCCEEecccccee
Confidence 9999999999987665543
No 78
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=99.02 E-value=1.9e-09 Score=121.14 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=101.1
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
.+++..|....|+|+|+|||||++|.++.|+++|..+..||+|.+....+..|..+...+... .+-. +...+.
T Consensus 34 ~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~---l~~~---~~~~~~- 106 (861)
T TIGR00392 34 GKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKK---LGIS---GKKEIS- 106 (861)
T ss_pred CCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHH---hCcc---cccccc-
Confidence 345688889999999999999999999999999999999999999999999999988665311 1100 000000
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-----s~~~~~v~ 280 (426)
+ . |-++.++..++++....+.+++.+.+||+.+||..+ ..|...+.
T Consensus 107 ---------------~----~----------~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~ 157 (861)
T TIGR00392 107 ---------------S----L----------EIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQW 157 (861)
T ss_pred ---------------h----h----------hHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHH
Confidence 0 0 001223344556677788899999999999988654 23456799
Q ss_pred HHHHHHHHCCCEEEeC
Q 014355 281 GVIDELSKQGLVEESQ 296 (426)
Q Consensus 281 ~vi~~L~~~g~~~~~d 296 (426)
.++.+|.++|++|+..
T Consensus 158 ~~f~~l~~~gliyr~~ 173 (861)
T TIGR00392 158 WLFKEAHEKGLLYRGL 173 (861)
T ss_pred HHHHHHHHCCCEeecc
Confidence 9999999999999843
No 79
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=98.99 E-value=2.2e-09 Score=121.01 Aligned_cols=129 Identities=16% Similarity=0.196 Sum_probs=99.8
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
+.++.+|-...||++|+|||||++|.++.|+++|..+..||+|......+..|..+...+... .+. .
T Consensus 47 ~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~---l~~----~------ 113 (912)
T PRK05743 47 GKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKK---LGK----K------ 113 (912)
T ss_pred CCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHH---cCC----c------
Confidence 345689999999999999999999999999999999999999999999999999988655321 000 0
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-----s~~~~~v~ 280 (426)
...+ ...+|. +..+++++.+.+.+++.+++||+.+||..+ ..|...+.
T Consensus 114 --------~~~~-~~~~f~------------------~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~ 166 (912)
T PRK05743 114 --------GKKL-SAAEFR------------------KKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANII 166 (912)
T ss_pred --------cccC-CHHHHH------------------HHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHH
Confidence 0000 011233 334556777778899999999999987543 23456799
Q ss_pred HHHHHHHHCCCEEE
Q 014355 281 GVIDELSKQGLVEE 294 (426)
Q Consensus 281 ~vi~~L~~~g~~~~ 294 (426)
+++.+|.++|++|+
T Consensus 167 ~~f~~l~~~Gliy~ 180 (912)
T PRK05743 167 RALGKMAKKGYLYK 180 (912)
T ss_pred HHHHHHHHCCCEEe
Confidence 99999999999997
No 80
>PLN02843 isoleucyl-tRNA synthetase
Probab=98.96 E-value=4.6e-09 Score=118.91 Aligned_cols=137 Identities=12% Similarity=0.126 Sum_probs=103.0
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
.+++.+|-...||+||.|||||++|.++.|+++|..+..||+|......+..|..+..-+. ++.+.
T Consensus 30 ~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~ve---k~l~~----------- 95 (974)
T PLN02843 30 NGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVL---QSLDQ----------- 95 (974)
T ss_pred CCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHH---HHhch-----------
Confidence 3567999999999999999999999999999999999999999999999999999875331 11100
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-----s~~~~~v~ 280 (426)
+....+ ...+| ++..+++++.+...+++.+++||+..||..+ ..|...+.
T Consensus 96 ------~~~~~~-~~~~f------------------~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~ 150 (974)
T PLN02843 96 ------EARKEL-TPIKL------------------RAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQI 150 (974)
T ss_pred ------hhhccC-CHHHH------------------HHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHH
Confidence 000000 01123 3344556677778889999999999887543 23456799
Q ss_pred HHHHHHHHCCCEEEeCCeEEE
Q 014355 281 GVIDELSKQGLVEESQGARVI 301 (426)
Q Consensus 281 ~vi~~L~~~g~~~~~dGa~~~ 301 (426)
+++.+|.++|++|+..--+.+
T Consensus 151 ~~f~~l~~~GlIyr~~kpV~W 171 (974)
T PLN02843 151 EVFGQMFLNGYIYRGRKPVHW 171 (974)
T ss_pred HHHHHHHHCCCEEecceeeee
Confidence 999999999999986655544
No 81
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=98.96 E-value=1.1e-08 Score=117.50 Aligned_cols=139 Identities=22% Similarity=0.139 Sum_probs=103.0
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHH
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (426)
+++.++.-..||+||++||||+++.++.|+++|..+..||+|.+....+..|..+...++. ..+- . ..+.+.+
T Consensus 101 ~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk---~lg~-~--~k~~i~~- 173 (1205)
T PTZ00427 101 KKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEK---ENNI-N--KKEDILK- 173 (1205)
T ss_pred CCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHH---HhCC-C--cccchhh-
Confidence 4568889999999999999999999999999999999999999999999999998865431 1110 0 0011110
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHH
Q 014355 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (426)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-----s~~~~~v~~ 281 (426)
. |-++..+..++++..+...+++.+++||+..||..+ ..|...+..
T Consensus 174 -------------------~----------g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~ 224 (1205)
T PTZ00427 174 -------------------M----------GIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWW 224 (1205)
T ss_pred -------------------c----------CHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHH
Confidence 0 111122344556777778899999999998887543 234567999
Q ss_pred HHHHHHHCCCEEEeCCeEEE
Q 014355 282 VIDELSKQGLVEESQGARVI 301 (426)
Q Consensus 282 vi~~L~~~g~~~~~dGa~~~ 301 (426)
++.+|.++|++|+..--+.+
T Consensus 225 ~f~~L~ekGlIYr~~k~V~w 244 (1205)
T PTZ00427 225 VFSELYKNNYVYKSFKVMPY 244 (1205)
T ss_pred HHHHHHHCCCEEecceeecc
Confidence 99999999999986654433
No 82
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=98.95 E-value=9.2e-09 Score=108.04 Aligned_cols=77 Identities=12% Similarity=-0.018 Sum_probs=52.4
Q ss_pred ccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCC
Q 014355 318 GFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFS 397 (426)
Q Consensus 318 ~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G 397 (426)
.|||. .|..++.. ..|.+++| .|.+|..+-.+...+.+.+++.. .+... -|+.++ .+|.|||||++
T Consensus 182 yPtYd---fa~~vdD~-l~gITHvi--Rg~E~~~nt~~Y~~~~~~l~~~~-----~P~~~--~F~rln-~~~~kLSKRk~ 247 (522)
T TIGR00440 182 YPMYD---FTHCISDA-MENITHSL--CTLEFQDNRRLYDWVLDNIHIFP-----RPAQY--EFSRLN-LEGTVLSKRKL 247 (522)
T ss_pred EeCcC---Cceeehhc-cCCCceEe--ecHhhhhcHHHHHHHHHhcCccC-----CCceE--EEEEEC-CCCCCcccccc
Confidence 56665 56666665 46889996 88888888777777778888731 12222 334443 57889999998
Q ss_pred Cc---------------eeHHHHHHH
Q 014355 398 EV---------------VRLVDLLDE 408 (426)
Q Consensus 398 ~~---------------v~L~dLlde 408 (426)
.. .|+..+.+.
T Consensus 248 ~~~V~~g~v~GWdDPRl~Ti~~lrrr 273 (522)
T TIGR00440 248 AQLVDDKFVRGWDDPRMPTISGLRRR 273 (522)
T ss_pred hhccccCcccCCCCCccccHHHHHHC
Confidence 75 377777665
No 83
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=98.92 E-value=6.2e-09 Score=117.87 Aligned_cols=137 Identities=15% Similarity=0.126 Sum_probs=101.3
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHH
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (426)
.++.+|--..||++|.|||||++|.++.|+++|..+..||+|.+....+-.|..+..-+.. +... .+....
T Consensus 53 ~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek---~~~~----~~~~~~-- 123 (961)
T PRK13804 53 RPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEE---KYRA----KGKNKD-- 123 (961)
T ss_pred CCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHH---hhhh----cCCChH--
Confidence 4568899999999999999999999999999999999999999999999999998854321 1000 000000
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHH
Q 014355 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (426)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-----s~~~~~v~~ 281 (426)
.+ ...+|. +..++++....+.+++.+++||+.+||..+ ..|...+..
T Consensus 124 ---------~~-~~~~f~------------------~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~ 175 (961)
T PRK13804 124 ---------EV-PVAEFR------------------KECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAR 175 (961)
T ss_pred ---------hC-CHHHHH------------------HHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHH
Confidence 00 001232 334556667778899999999999998654 234567899
Q ss_pred HHHHHHHCCCEEEeCCeEE
Q 014355 282 VIDELSKQGLVEESQGARV 300 (426)
Q Consensus 282 vi~~L~~~g~~~~~dGa~~ 300 (426)
++.+|.++|++|+..--++
T Consensus 176 ~F~~l~~kGliyr~~kpV~ 194 (961)
T PRK13804 176 EFGKFAAKGQLYRGSKPVM 194 (961)
T ss_pred HHHHHHHCCCEEeCCccee
Confidence 9999999999998654443
No 84
>PLN02882 aminoacyl-tRNA ligase
Probab=98.92 E-value=1.8e-08 Score=115.62 Aligned_cols=135 Identities=18% Similarity=0.156 Sum_probs=101.2
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHH
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (426)
.++.++.-..||+||++||||+++.++.|+++|..+..||+|.+....+..|..+...++. ..+- ...+.+.++
T Consensus 37 ~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek---~lgi---~~~~~i~~~ 110 (1159)
T PLN02882 37 LPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDK---KLGI---KRRDDVLKM 110 (1159)
T ss_pred CCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHH---HcCC---CCccchhhc
Confidence 4568899999999999999999999999999999999999999999999999998865421 1110 001111100
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHH
Q 014355 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (426)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-----s~~~~~v~~ 281 (426)
- -.+| .+..++++..+.+.+++.+++||+.+||..+ ..|...+..
T Consensus 111 ---g---------~~~f------------------~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~ 160 (1159)
T PLN02882 111 ---G---------IDKY------------------NEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWW 160 (1159)
T ss_pred ---C---------HHHH------------------HHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHH
Confidence 0 0122 2344566777788899999999999887543 234567999
Q ss_pred HHHHHHHCCCEEEeCC
Q 014355 282 VIDELSKQGLVEESQG 297 (426)
Q Consensus 282 vi~~L~~~g~~~~~dG 297 (426)
++.+|.++|++|+..-
T Consensus 161 ~f~~l~~kGliyr~~~ 176 (1159)
T PLN02882 161 VFKQLFEKGLVYKGFK 176 (1159)
T ss_pred HHHHHHHCCCEEecce
Confidence 9999999999998553
No 85
>PLN02859 glutamine-tRNA ligase
Probab=98.90 E-value=2.1e-08 Score=108.97 Aligned_cols=67 Identities=13% Similarity=0.034 Sum_probs=51.3
Q ss_pred cccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCc
Q 014355 321 YASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 399 (426)
Q Consensus 321 Y~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~ 399 (426)
|.|=|.|..+... ..|.+++| .|.+|..+-++...++++||+. .+.+.|. + .++.+|.+||||++..
T Consensus 441 yPtYdFA~~vdD~-legITHvL--Rg~E~~~~~~~y~wl~~aLg~~------~P~~~~f--~-rLn~~~t~LSKRkl~~ 507 (788)
T PLN02859 441 YPSYDYAHCIVDS-LENITHSL--CTLEFETRRASYYWLLDSLGLY------QPYVWEY--S-RLNVTNTVMSKRKLNR 507 (788)
T ss_pred Eeccccccccccc-ccCCceEe--echhhhcCCHHHHHHHHHcCCC------CCcEEee--e-eECCCCCcccCcCchh
Confidence 4444567666655 46889986 8899988888888899999984 4678887 5 4567899999999864
No 86
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=98.89 E-value=4.7e-08 Score=107.15 Aligned_cols=91 Identities=12% Similarity=0.021 Sum_probs=56.1
Q ss_pred CCeEEEEecC----CC---CCeEEEecCCccc---------cccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHH
Q 014355 296 QGARVIFIEG----VN---IPLIIVKSDGGFN---------YASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSA 359 (426)
Q Consensus 296 dGa~~~~~~g----~~---~d~Vl~ksDG~~t---------Y~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~ 359 (426)
+|..+++... .. .|.|+.|.++++. |.|=|.|..++.. ..|.+++| .|.+|..+-++...+
T Consensus 172 ~g~~vlR~Kid~~~~n~~~rD~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~-l~gITHvl--Rg~E~~~~~~~~~~l 248 (771)
T PRK14703 172 DGAHVLRAKIDMSSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDA-IEGVTHSI--CTLEFENNRAIYDWV 248 (771)
T ss_pred CCCeEEEEEeeccCCcccCCCCEEEEEcCCCCCCcCCCCCcCCCccccceeecc-ccCCcEEE--ecHhhhhccHHHHHH
Confidence 4556666541 11 3788998753322 3333456555554 46888886 888988887777789
Q ss_pred HHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccC
Q 014355 360 AKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF 396 (426)
Q Consensus 360 ~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~ 396 (426)
+++||+.+. .|....+.|+++ .|.+||||+
T Consensus 249 ~~~l~~~~~-~P~~~~f~rl~l------~~~~lSKRk 278 (771)
T PRK14703 249 LDHLGPWPP-RPRQYEFARLAL------GYTVMSKRK 278 (771)
T ss_pred HHHhCCCCC-CcceeEEEEecc------CCCcccccC
Confidence 999964210 022224555433 467899998
No 87
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.87 E-value=3.7e-09 Score=105.96 Aligned_cols=239 Identities=16% Similarity=0.207 Sum_probs=107.0
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCC--CccccccHH
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNS--EDANETAIG 204 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~--~~~~~~~i~ 204 (426)
.+.++++ ++-.|.|+.|||++|-.+.++.++|.|+.+|++|..++..+|.-. | .-+....|+. ..+-+.++.
T Consensus 22 ~~~~v~~-sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~----l-RKvP~~~p~~~~~~ylg~Plt 95 (360)
T PF01921_consen 22 KEPYVFA-SGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDP----L-RKVPPNVPNPELEKYLGKPLT 95 (360)
T ss_dssp -SEEEEE-EEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB----------TTS-CC-CCCCTTSBTT
T ss_pred CccEEEe-cCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCc----c-cCCCCCCChHHHHHhcCCccc
Confidence 4455555 889999999999999999999999999999999999999999521 1 1111122322 111111211
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-ccc-cCc----
Q 014355 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SFY-NPY---- 278 (426)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-s~~-~~~---- 278 (426)
.+ .+|. |. ...+.+.....|.+.|+.|||++++.+- ..| ++.
T Consensus 96 ~V------------PdP~--------------G~------~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~ 143 (360)
T PF01921_consen 96 RV------------PDPF--------------GC------HESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQ 143 (360)
T ss_dssp TS------------B-TT--------------SS------SSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHH
T ss_pred cC------------CCCC--------------CC------CccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHH
Confidence 00 0110 00 1124566667888899999999854322 233 222
Q ss_pred ----------HHHHHHHHHHCCCEEEeCCeEEE--Eec--CC-CCCeEEEec--CCccccccc-----------------
Q 014355 279 ----------IPGVIDELSKQGLVEESQGARVI--FIE--GV-NIPLIIVKS--DGGFNYAST----------------- 324 (426)
Q Consensus 279 ----------v~~vi~~L~~~g~~~~~dGa~~~--~~~--g~-~~d~Vl~ks--DG~~tY~t~----------------- 324 (426)
+.+++..-.... ..++-+-| .++ |. +.-.|+--. .++-+|..+
T Consensus 144 i~~aL~~~~~I~~Il~~~~~~~---~~~~y~Pf~piC~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~gKL 220 (360)
T PF01921_consen 144 IRTALENRDEIREILNEYRGRE---RPETYSPFLPICEKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGNGKL 220 (360)
T ss_dssp HCHHHHTHHHHHHHHHHHHHHT-----TT--SEEEEETTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT-EEE
T ss_pred HHHHHHhHHHHHHHHHHhcCcC---CCCCeeeeeeeccccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCcccc
Confidence 333333322111 11110001 011 10 000111111 233334331
Q ss_pred ----cHHHHHHHHhhcCCCeEEEEeeCCccc---cHHHHHHHH-HHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccC
Q 014355 325 ----DLAALWYRLNEEKAEWIIYVTDVGQQL---HFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF 396 (426)
Q Consensus 325 ----DiA~~~~r~~~~~~d~~i~V~g~~q~~---hf~~~~~~~-~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~ 396 (426)
|.|+ |+...+.| +--.|.||.. -+..=..++ +.+|+.+ =.++.|+++.+.+|.||||++
T Consensus 221 ~WkvDW~m---RW~~lgVd--fEp~GKDH~~~GGS~d~~~~I~~~i~g~~p--------P~~~~YE~~~~~g~~kmSsSk 287 (360)
T PF01921_consen 221 QWKVDWPM---RWAALGVD--FEPFGKDHASPGGSYDTSKRIAREILGYEP--------PVPFPYEFFLDKGGGKMSSSK 287 (360)
T ss_dssp -HHHHHHH---HHHHTT-S--EEEEEHHHHCTTSHHHHHHHHHHHCC-------------EEEEE--EEES---------
T ss_pred cCCCcChh---hhhhcCce--eccCCCccCCCCCChhhHHHHHHHHhCCCC--------CCCCCeeEEEeCCCcccccCC
Confidence 2221 22234544 3446888876 666667888 7789842 346789999988888999999
Q ss_pred CCceeHHHHHHHHHHHHHHHHHH
Q 014355 397 SEVVRLVDLLDEAKNRSKAVLIE 419 (426)
Q Consensus 397 G~~v~L~dLlde~~~~a~~~i~~ 419 (426)
||++|++|+|+-+-..+...+--
T Consensus 288 G~~~t~~e~L~~~~PE~lr~l~~ 310 (360)
T PF01921_consen 288 GNGITPEEWLEYAPPESLRYLMA 310 (360)
T ss_dssp -----HHHHHTTS-HHHHHHHHH
T ss_pred CCccCHHHHHHhcCHHHHHHHHc
Confidence 99999999999888777766543
No 88
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.4e-07 Score=94.74 Aligned_cols=112 Identities=15% Similarity=0.254 Sum_probs=84.5
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHhhcccC
Q 014355 139 IAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFD 218 (426)
Q Consensus 139 p~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~ 218 (426)
|+.+.|+||+.++++.|++||.-+..|-.|+.....+..|..|...++.- +-+|.
T Consensus 50 vNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatn----------G~~P~--------------- 104 (578)
T KOG0436|consen 50 VNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATN----------GRNPP--------------- 104 (578)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhc----------CCChH---------------
Confidence 44455999999999999999999999999999999999998887665421 11111
Q ss_pred CChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-ee--ccccccCcHHHHHHHHHHCCCEEEe
Q 014355 219 SDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EK--GESFYNPYIPGVIDELSKQGLVEES 295 (426)
Q Consensus 219 ~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~--~Es~~~~~v~~vi~~L~~~g~~~~~ 295 (426)
++|+..-+.|.+....+||.++ +- .+..|...|++..+.+.++|.+|..
T Consensus 105 ----------------------------e~cDr~s~~f~qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g 156 (578)
T KOG0436|consen 105 ----------------------------ELCDRISQSFRQLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRG 156 (578)
T ss_pred ----------------------------HHHhhhhHHHHHHHHHhCcchhheeecCCchHHHHHHHHHHHHHhCCceeee
Confidence 2455555667777888899884 32 3456677899999999999999964
Q ss_pred --CCeEEEEe
Q 014355 296 --QGARVIFI 303 (426)
Q Consensus 296 --dGa~~~~~ 303 (426)
+|-+|+..
T Consensus 157 ~~eGwYcvsd 166 (578)
T KOG0436|consen 157 DYEGWYCVSD 166 (578)
T ss_pred cccceEeccc
Confidence 57777654
No 89
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=8.3e-08 Score=99.16 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=45.4
Q ss_pred ceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
..++|+ |+..|.|..|||+.|-.+.+|+++|.|+..|++|..++..+|+
T Consensus 19 ~~~~v~-tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~ 67 (521)
T COG1384 19 DEYVVA-TGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDY 67 (521)
T ss_pred CcEEEe-cCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCC
Confidence 456666 7899999999999999999999999999999999999999996
No 90
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=98.73 E-value=1.3e-07 Score=99.78 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=26.9
Q ss_pred ceEEEEecCCCcCCCccchhHHHHHHHHHHHHH
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARM 160 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larl 160 (426)
++|+.=| .|+|||+|||||+|++++-..+||-
T Consensus 50 gkv~tRF-aPsPtG~LHiGharaalln~~~Ar~ 81 (574)
T PTZ00437 50 GKPYFRF-PPEPNGFLHIGHAKSMNLNFGSARA 81 (574)
T ss_pred CcEEEEe-CCCCCCcccHHHHHHHHHHHHHHHH
Confidence 3565554 7999999999999999999988875
No 91
>PLN02959 aminoacyl-tRNA ligase
Probab=98.72 E-value=1.1e-07 Score=108.82 Aligned_cols=172 Identities=15% Similarity=0.151 Sum_probs=107.0
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHH---hhCCCCCccc-ccc
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLF---EKFPNSEDAN-ETA 202 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~---~~~~~~~~~~-~~~ 202 (426)
..+..|.+.-|++||+|||||++|.++.|+++|..|..||+|.+....+-.|..+...+.-+. +.++.....+ .+.
T Consensus 44 ~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~ 123 (1084)
T PLN02959 44 GEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDE 123 (1084)
T ss_pred CCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccc
Confidence 356899999999999999999999999999999999999999999999999999998875442 2233211000 000
Q ss_pred HHHHHHHHHHh--hcccCCChHHHHHHHHHHHHHhcCChHH--------------HHHH---HHHHHHHHHHHHHHHHHc
Q 014355 203 IGELQEFYRRS--KNRFDSDPAFKERAQQAVVRLQSGEPKY--------------HEAW---AQICEISRKEFDKVYKRL 263 (426)
Q Consensus 203 i~~l~~~y~~~--~~~~~~~~~~~~~a~~~~~~le~gd~~~--------------~~~w---~~~~~~~~~~~~~~~~~L 263 (426)
-.+-...-... ...-....+|.+++++...+. |+.+. +..+ ..+++..-..+++++++|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~--~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~l 201 (1084)
T PLN02959 124 DEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKS--GTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAF 201 (1084)
T ss_pred cccccccccccccccccccHHHHHHHHHHHHHHh--CCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHh
Confidence 00000000000 000001124555555544331 22110 0001 112233336678899999
Q ss_pred CCceeeecc-------ccccCcHHHHHHHHHHCCCEEEeCCeEE
Q 014355 264 RVDLEEKGE-------SFYNPYIPGVIDELSKQGLVEESQGARV 300 (426)
Q Consensus 264 gi~fd~~~E-------s~~~~~v~~vi~~L~~~g~~~~~dGa~~ 300 (426)
|+..||..+ ..|...+...+.+|.++|++|+..--+.
T Consensus 202 G~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~ 245 (1084)
T PLN02959 202 GLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTI 245 (1084)
T ss_pred CceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeee
Confidence 999998643 1245568999999999999998554333
No 92
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=2.6e-08 Score=104.74 Aligned_cols=116 Identities=22% Similarity=0.318 Sum_probs=86.0
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHH
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (426)
++|+++.. =|.|.|.|||||.|-..|.|+|||+.|.+||+|+.-...+-+|..-...+.
T Consensus 57 k~KYiLsM-FPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAi-------------------- 115 (876)
T KOG0435|consen 57 KKKYILSM-FPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAI-------------------- 115 (876)
T ss_pred CCceEEEe-cCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHH--------------------
Confidence 34444432 389999999999999999999999999999999999999988865432210
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-c----cccCcHHH
Q 014355 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-S----FYNPYIPG 281 (426)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-s----~~~~~v~~ 281 (426)
++- -+| +.| ...-++.+++.+.+||+.|||..| | .|-...+-
T Consensus 116 --------erg-v~P---------------------~sW---T~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQw 162 (876)
T KOG0435|consen 116 --------ERG-VHP---------------------ASW---TINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQW 162 (876)
T ss_pred --------hcC-CCc---------------------hhh---hHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHH
Confidence 000 011 122 233457788899999999999877 3 34457889
Q ss_pred HHHHHHHCCCEEEeC
Q 014355 282 VIDELSKQGLVEESQ 296 (426)
Q Consensus 282 vi~~L~~~g~~~~~d 296 (426)
++-.|-++|++|+.+
T Consensus 163 iFlkLfe~GLAYq~E 177 (876)
T KOG0435|consen 163 IFLKLFEKGLAYQAE 177 (876)
T ss_pred HHHHHHHhhhhhccc
Confidence 999999999999754
No 93
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=1.7e-07 Score=101.35 Aligned_cols=138 Identities=21% Similarity=0.309 Sum_probs=100.5
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
.+...+|--..||+||.|||||+-...|-|+|+|.-|..||.|...=..+.+|.-...+.+-...+-..
T Consensus 73 ~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~----------- 141 (995)
T KOG0432|consen 73 PGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGG----------- 141 (995)
T ss_pred CCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcC-----------
Confidence 466788899999999999999999999999999999999999999999999996655444211111000
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccc-----cCcHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFY-----NPYIP 280 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~Es~~-----~~~v~ 280 (426)
..+ .+..|+.|.+ +.| ++.+.....+.+.+++||.++||..|-|. +..|.
T Consensus 142 --------~~R-------h~lgRe~F~~---------~vw-~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~ 196 (995)
T KOG0432|consen 142 --------KTR-------HDLGREEFLK---------EVW-EWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVT 196 (995)
T ss_pred --------cch-------hhcCHHHHHH---------HHH-HHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHH
Confidence 000 0111222221 223 33456667888899999999999776544 34689
Q ss_pred HHHHHHHHCCCEEEeCCeE
Q 014355 281 GVIDELSKQGLVEESQGAR 299 (426)
Q Consensus 281 ~vi~~L~~~g~~~~~dGa~ 299 (426)
+++-+|.+.|++|+...-+
T Consensus 197 eAFvrL~eeglIyR~~rlV 215 (995)
T KOG0432|consen 197 EAFVRLHEEGLIYRANRLV 215 (995)
T ss_pred HHHHHHHhcCceEecCcee
Confidence 9999999999999977644
No 94
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=98.41 E-value=5.6e-07 Score=101.58 Aligned_cols=123 Identities=24% Similarity=0.332 Sum_probs=87.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHhhcccCCChH
Q 014355 143 MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPA 222 (426)
Q Consensus 143 lHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~ 222 (426)
|||||+|+.++.|+++|..|..||+|.+....+-.|..+...+..+.. ++.+.. +.++... .. ...+
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~--------~~~~~~---~~~~~~~-gi-~~~~ 67 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIAR--------GDPETI---ELYKSLY-GI-PEEE 67 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhc--------cchhHH---HHHHHHc-CC-CHHH
Confidence 699999999999999999999999999999999999999866533211 011111 1111100 00 0011
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHHHHHHHHHCCCEEE
Q 014355 223 FKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGVIDELSKQGLVEE 294 (426)
Q Consensus 223 ~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-----s~~~~~v~~vi~~L~~~g~~~~ 294 (426)
+ .++ +++ +++++.+...+++++++||+.+||..+ ..|...+..++.+|.++|++|+
T Consensus 68 i--------~~f--~~~------~~~~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyr 128 (897)
T PRK12300 68 L--------EKF--KDP------EYIVEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVK 128 (897)
T ss_pred H--------HHh--cCH------HHHHHHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEec
Confidence 1 111 122 466777888999999999999998654 2455679999999999999997
No 95
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=4.5e-05 Score=85.09 Aligned_cols=133 Identities=20% Similarity=0.235 Sum_probs=94.5
Q ss_pred ceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHH
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (426)
++.+..=..|.-||.+||||+-|-||=|++.|.-...||+|.+....+=.|..|..-++ ++++. .+..+.
T Consensus 49 ~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~ve---k~lg~----~k~~i~--- 118 (933)
T COG0060 49 PKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVE---KKLGI----GKKDIE--- 118 (933)
T ss_pred CcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHH---HHhCC----Ccchhh---
Confidence 34455557889999999999999999999999999999999999999999998874432 11111 000000
Q ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc--c---cccCcHHHH
Q 014355 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE--S---FYNPYIPGV 282 (426)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E--s---~~~~~v~~v 282 (426)
.+ .-.+|.+ .+++++....+.+++++.||||-.||..- + .|...+-.+
T Consensus 119 --------~~-~~~efr~------------------~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~ 171 (933)
T COG0060 119 --------SF-GVEEFRE------------------KCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWA 171 (933)
T ss_pred --------hc-CHHHHHH------------------HHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHH
Confidence 00 0113444 44556666778889999999999887432 1 234456788
Q ss_pred HHHHHHCCCEEEeCC
Q 014355 283 IDELSKQGLVEESQG 297 (426)
Q Consensus 283 i~~L~~~g~~~~~dG 297 (426)
+.++.++|++|+.--
T Consensus 172 f~~~~~kGllyrg~K 186 (933)
T COG0060 172 FKELYEKGLLYRGYK 186 (933)
T ss_pred HHHHHHCCCeecCCe
Confidence 999999999998433
No 96
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.45 E-value=0.0014 Score=65.98 Aligned_cols=93 Identities=18% Similarity=0.237 Sum_probs=56.3
Q ss_pred CccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEe-EEEEcCCCcccccc
Q 014355 317 GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGF-GLVLGEDGKRLRTR 395 (426)
Q Consensus 317 G~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~-g~v~~~~g~kmSkR 395 (426)
|-.+|..-=.|- +..+++|.+ .+|.||..|+.--+.+++.++..-...-..+...|..+ -.+.+.+|+||||+
T Consensus 123 g~l~YP~lqaaD----il~~~~d~v--pvG~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~~~KMSKS 196 (328)
T TIGR00233 123 GLFSYPVLQAAD----ILLYQADLV--PVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKS 196 (328)
T ss_pred hhhcchHHHHhh----hhhcCCCee--ecccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCCCCcCCCC
Confidence 666776422221 113567755 59999999999889999998820000001233344322 22445556899999
Q ss_pred CCC-ceeHHHHHHHHHHHHHH
Q 014355 396 FSE-VVRLVDLLDEAKNRSKA 415 (426)
Q Consensus 396 ~G~-~v~L~dLlde~~~~a~~ 415 (426)
.++ .|.|.|=-+++.+....
T Consensus 197 ~~~s~I~L~D~~e~I~~KI~~ 217 (328)
T TIGR00233 197 DPNSAIFLTDTPKQIKKKIRK 217 (328)
T ss_pred CCCCeEeecCCHHHHHHHHHh
Confidence 996 99887755555555444
No 97
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=97.44 E-value=0.0029 Score=62.34 Aligned_cols=93 Identities=20% Similarity=0.183 Sum_probs=55.3
Q ss_pred CccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC--ccccc
Q 014355 317 GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRT 394 (426)
Q Consensus 317 G~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g--~kmSk 394 (426)
|..+|..-=.| + +..++++.+ .+|.||..|+..-+.+++.++..-..--..+...|....+|.+-+| .||||
T Consensus 121 g~~~YP~lqaa---D-il~~~~~~v--pvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSK 194 (280)
T cd00806 121 GLLTYPVLQAA---D-ILLYKACLV--PVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSK 194 (280)
T ss_pred hhhcchHHHHh---h-hhhccCCEE--eeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccC
Confidence 55677632111 1 113456555 4699999999999999999882100000134444431233544444 59999
Q ss_pred cCC-CceeHHHHHHHHHHHHHH
Q 014355 395 RFS-EVVRLVDLLDEAKNRSKA 415 (426)
Q Consensus 395 R~G-~~v~L~dLlde~~~~a~~ 415 (426)
+.| +.|.|.|==+++.+..++
T Consensus 195 S~~~~~I~L~d~~~~i~~KI~~ 216 (280)
T cd00806 195 SDPNNAIFLTDSPKEIKKKIMK 216 (280)
T ss_pred CCCCCeEEeeCCHHHHHHHHHh
Confidence 999 999998755555554443
No 98
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.36 E-value=0.00054 Score=69.01 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=52.3
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCc--cccccC-CCceeHHHHHHHHHHH
Q 014355 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK--RLRTRF-SEVVRLVDLLDEAKNR 412 (426)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~--kmSkR~-G~~v~L~dLlde~~~~ 412 (426)
+++|.+ .+|.||..|+.--..+++.+++. .+...+. -++.+-+|. ||||+. |+.|.|.|=-+++.++
T Consensus 167 ~~ad~v--pvG~DQ~~h~~l~Rdia~~~n~~------~p~~l~~--~~l~~L~g~~~KMSKS~p~~~I~L~D~~~~I~~K 236 (329)
T PRK08560 167 LDVDIA--VGGMDQRKIHMLAREVLPKLGYK------KPVCIHT--PLLTGLDGGGIKMSKSKPGSAIFVHDSPEEIRRK 236 (329)
T ss_pred hCCCEE--EechhHHHHHHHHHHhhHhcCCC------CceEEEc--CccCCCCCCCCCCcCCCCCCeecccCCHHHHHHH
Confidence 567766 49999999998888999988873 2333444 346666665 999999 9999998777777666
Q ss_pred HHH
Q 014355 413 SKA 415 (426)
Q Consensus 413 a~~ 415 (426)
.++
T Consensus 237 I~k 239 (329)
T PRK08560 237 IKK 239 (329)
T ss_pred HHh
Confidence 655
No 99
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=97.34 E-value=0.00047 Score=71.41 Aligned_cols=60 Identities=17% Similarity=0.079 Sum_probs=44.9
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~d 404 (426)
.+++|.. +.|.||..|+..-..+++.++.. ....+..-++.+.+|+||||+.|+.|.|+|
T Consensus 186 ~~~~~i~--~gG~DQ~~ni~~grdla~r~~~~--------~~~~l~~plL~~~~G~KMsKS~~naI~L~d 245 (408)
T PRK05912 186 RYGCDLQ--LGGSDQWGNILSGRDLQRRYGGK--------PQFGLTMPLLTGLDGKKMGKSEGNAVWLDE 245 (408)
T ss_pred cCCCCEE--eccHHHHHHHHHHHHHHHHhCCC--------CeEEEecCCcCCCCCCcccCCCCCceeCCC
Confidence 3455544 58999999998878888888752 122223344778889999999999999987
No 100
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=97.27 E-value=0.00047 Score=74.98 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=45.8
Q ss_pred cCCCeEEEEeeCCccc-cHHHHHHHHHHc-CCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHH
Q 014355 336 EKAEWIIYVTDVGQQL-HFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRS 413 (426)
Q Consensus 336 ~~~d~~i~V~g~~q~~-hf~~~~~~~~~l-g~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a 413 (426)
+.+| +++.|.||.. ||..+.-..-++ +- .++...+.| |+|++.+|+||||++||+|+..+++++.+..|
T Consensus 513 ~P~D--~~~~G~D~~~~W~~~~l~~~~~l~~~----~pfk~v~~h---G~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~ 583 (601)
T PF00133_consen 513 YPVD--LYIEGKDQIRGWFQSSLFLSVALFGK----EPFKKVITH---GFVLDEDGRKMSKSKGNVIDPEDIIEKYGADA 583 (601)
T ss_dssp SSBS--EEEEEGGGTTTHHHHHHHHHHHHSSS----TSBSEEEEE-----EEETTSSB-BTTTTB--BHHHHHHHT-HHH
T ss_pred CCcc--cccCCccchhhHHHHhHhhccccccC----Cchheeeec---ccccccceeecccCCCcccCHHHHHHHhCcHH
Confidence 3456 4468998854 676653333332 32 245444444 88999999999999999999999999988887
Q ss_pred HHH
Q 014355 414 KAV 416 (426)
Q Consensus 414 ~~~ 416 (426)
.+.
T Consensus 584 lRl 586 (601)
T PF00133_consen 584 LRL 586 (601)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 101
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.27 E-value=0.0017 Score=66.24 Aligned_cols=90 Identities=20% Similarity=0.303 Sum_probs=57.4
Q ss_pred CccccccccHHHHHH-HHhhcCCCeEEEEeeCCccccHHHHHHHHHHc----CCCCCCCCCCCcEEEEEeEEEEcCCCcc
Q 014355 317 GGFNYASTDLAALWY-RLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRA----GWLSADDSTYPKASHVGFGLVLGEDGKR 391 (426)
Q Consensus 317 G~~tY~t~DiA~~~~-r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~l----g~~~~~~~~~~~~~Hv~~g~v~~~~g~k 391 (426)
|-.+|..-=.|-.+. .+ ..++...+-.+|.||..||.--+.+++.+ |+. .+...|.. ++.+-+|.|
T Consensus 181 g~~~YP~lQaADil~~~~-~~~~~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~------~P~~l~~~--~lpgL~G~K 251 (368)
T PRK12285 181 GHIFYPATQAADILHPQL-EEGPKPTLVPVGIDQDPHIRLTRDIAERLHGGYGFI------KPSSTYHK--FMPGLTGGK 251 (368)
T ss_pred hhhhhhHHHHHHHHhhcc-cccCCceEEEeccchHHHHHHHHHHHHHHhhhcCCC------CchhHhhh--cccCCCCCc
Confidence 666777533232222 11 10222334469999999999889999988 874 23344443 476667789
Q ss_pred ccccC-CCceeHHHHHHHHHHHHHH
Q 014355 392 LRTRF-SEVVRLVDLLDEAKNRSKA 415 (426)
Q Consensus 392 mSkR~-G~~v~L~dLlde~~~~a~~ 415 (426)
|||+. ++.|.|.|=-+++.+..++
T Consensus 252 MSkS~~~s~I~L~D~p~~I~kKI~k 276 (368)
T PRK12285 252 MSSSKPESAIYLTDDPETVKKKIMK 276 (368)
T ss_pred CCCCCCCCeeeccCCHHHHHHHHHh
Confidence 99997 6799887755565555444
No 102
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=97.22 E-value=0.00042 Score=71.78 Aligned_cols=61 Identities=13% Similarity=0.051 Sum_probs=45.7
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDL 405 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dL 405 (426)
.+++|.. +.|.||..|+..=..+++.++.. .+...+. -++.+.+|.||||+.||+|.|+|=
T Consensus 184 ~~~~~iq--~gG~DQ~~ni~~grdl~~r~~~~------~~~~lt~--PlL~g~dG~KMsKS~~naI~L~d~ 244 (410)
T PRK13354 184 KEDVDLQ--IGGTDQWGNILMGRDLQRKLEGE------EQFGLTM--PLLEGADGTKMGKSAGGAIWLDPE 244 (410)
T ss_pred cCCCCEE--EecHHHHHHHHHHHHHHHHhCCC------CceEecc--CCccCCCCCccCCCCCCceeccCC
Confidence 3466633 58999999999888999988863 1222233 447788899999999999998764
No 103
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.15 E-value=0.00073 Score=76.84 Aligned_cols=69 Identities=13% Similarity=0.272 Sum_probs=51.8
Q ss_pred EEEeeCCccc-cHHHHHHHH-HHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHHH
Q 014355 342 IYVTDVGQQL-HFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVL 417 (426)
Q Consensus 342 i~V~g~~q~~-hf~~~~~~~-~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~i 417 (426)
+++.|.||.. +|..+.-.. -..|. .++...+.| |+|.+.+|+||||++||+|+..|++++.+..+.+.-
T Consensus 548 l~~~G~Di~r~Wf~~~l~~~~~~~g~----~P~k~vl~H---G~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ 618 (912)
T PRK05743 548 LYLEGSDQHRGWFQSSLLTSVATRGK----APYKQVLTH---GFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLW 618 (912)
T ss_pred EEEecccccchHHHHHHHHHHHhcCC----CccceeEEe---eeEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHH
Confidence 6789999974 677653222 23443 245555655 889998999999999999999999999888777653
No 104
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=97.09 E-value=0.0059 Score=62.71 Aligned_cols=72 Identities=11% Similarity=0.074 Sum_probs=48.1
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC-CC-ccccccCCC-ceeHHHHHHHHHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DG-KRLRTRFSE-VVRLVDLLDEAKN 411 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~-~g-~kmSkR~G~-~v~L~dLlde~~~ 411 (426)
.+++|.+ .+|.||..|+.--+.+++.+|+.+ .+.+.|. .++.+- +| .||||+.++ .|.|.|==+++..
T Consensus 208 ~l~adiv--pvG~DQ~~~~~LaRdia~~~~~~~-----~~~~~~~--~~lpgL~dg~~KMSKS~~ns~I~L~Dspe~I~k 278 (383)
T PTZ00126 208 YLKADIC--QLGMDQRKVNMLAREYCDKKKIKK-----KPIILSH--HMLPGLLEGQEKMSKSDPNSAIFMEDSEEDVNR 278 (383)
T ss_pred ccCCCEE--EeCccHHHHHHHHHHHHHHhCCCC-----Cceeecc--cccccCCCCCCCCCcCCCCCeecCCCCHHHHHH
Confidence 3577765 489999999987788999999631 2334354 346544 44 699999987 5888764444444
Q ss_pred HHHH
Q 014355 412 RSKA 415 (426)
Q Consensus 412 ~a~~ 415 (426)
..+.
T Consensus 279 KI~k 282 (383)
T PTZ00126 279 KIKK 282 (383)
T ss_pred HHHh
Confidence 4433
No 105
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=96.98 E-value=0.0011 Score=75.06 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=48.7
Q ss_pred EEEeeCCccc-cHHHHHHHH-HHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHH
Q 014355 342 IYVTDVGQQL-HFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 342 i~V~g~~q~~-hf~~~~~~~-~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~ 416 (426)
++|.|.||.. ||..+.-.. -..|.. ++...+.| |+|++.+|+|||||+||+|+..|++++....|.+.
T Consensus 567 ~~i~G~Di~r~Wf~~~~~~~~~~~~~~----P~k~v~~h---G~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~ 636 (861)
T TIGR00392 567 FILEGSDQTRGWFYSSLAIGTALFGQA----PYKNVITH---GFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRL 636 (861)
T ss_pred EEEEecchhccHHHHHHHHHHHHcCCC----ChHhhEec---ceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHH
Confidence 6789999954 566543222 223432 34344444 88998889999999999999999999987776654
No 106
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=96.88 E-value=0.014 Score=59.95 Aligned_cols=58 Identities=12% Similarity=0.023 Sum_probs=41.0
Q ss_pred CCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHH
Q 014355 337 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (426)
Q Consensus 337 ~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~d 404 (426)
..| +-+.|.||.+|+..-..+++.++-.. ..- ++.-++.+.+|.||||+.|+.|++++
T Consensus 177 ~~d--i~~gG~DQ~~ni~~g~dLar~~~~~~------~~~--~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 177 NVD--LQIGGSDQWGNIRKGRDLIRRNLPSL------GFG--LTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred cCC--eeEecchhHHHHHHHHHHHHHhcCCC------cee--eceeeecCCCCCCccCCCCCcccCCc
Confidence 455 55799999999998888888776421 111 22234666779999999998887754
No 107
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=96.80 E-value=0.002 Score=73.87 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=47.0
Q ss_pred EEEeeCCccc-cHHHHHHH-HHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHH
Q 014355 342 IYVTDVGQQL-HFDMVFSA-AKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 342 i~V~g~~q~~-hf~~~~~~-~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~ 416 (426)
+++.|.||.. .|..+..+ +..+|-. ++...+.| |+|++.+|+|||||+||+|+..|++++....|.+.
T Consensus 548 ~~~~G~Di~r~Wf~~l~~~~~~~~~~~----pfk~v~~h---G~Vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~ 617 (975)
T PRK06039 548 FIVEGIDQTRGWFYTLLALSTALFDRP----PYKNVLVH---GHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRW 617 (975)
T ss_pred EEEechhhHhhHHHHHHHHHHHhcCCC----cccEEEEe---eeEECCCCCCcCCCCCCcCCHHHHHHHhChHHHHH
Confidence 4578998864 23333222 1223331 34334444 88998899999999999999999999988877665
No 108
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.001 Score=73.81 Aligned_cols=72 Identities=19% Similarity=0.324 Sum_probs=49.0
Q ss_pred EEEeeCCcc---ccHHHH-HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHH
Q 014355 342 IYVTDVGQQ---LHFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 342 i~V~g~~q~---~hf~~~-~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~ 416 (426)
+||-|.+|. +-|-+. ..++.-+|+-+..+|+. ++. .-|||++.+|.||||++||+|+++|++++-+..+.+.
T Consensus 529 ~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~-~L~--~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl 604 (814)
T COG0495 529 LYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFK-KLI--TQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRL 604 (814)
T ss_pred eeecchhHHHHHHHHHHHHHHHhcccCcCCCccchh-hhh--ccceEEecCCCccccccCCCCCHHHHHHHhCchHHHH
Confidence 467888773 223333 35555567654333332 233 3399998788899999999999999999988776654
No 109
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=96.78 E-value=0.00094 Score=75.25 Aligned_cols=72 Identities=15% Similarity=0.332 Sum_probs=51.6
Q ss_pred EEEeeCCc-ccc--HHHH-HHHHHHcCCCCCCCCCCCcEEEEEeEEEEc----CCCc-----------------------
Q 014355 342 IYVTDVGQ-QLH--FDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLG----EDGK----------------------- 390 (426)
Q Consensus 342 i~V~g~~q-~~h--f~~~-~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~----~~g~----------------------- 390 (426)
+||-|.|| .+| +.+. +.++...|..+...|+...+.| |||++ ++|+
T Consensus 523 ~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~---G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 599 (842)
T TIGR00396 523 LYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQ---GMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVV 599 (842)
T ss_pred EeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhcc---ceEEeeeecCCCCccChhhhccccccccccCCcccc
Confidence 56789998 344 2222 3455555654333455555555 88998 7888
Q ss_pred ----cccccCCCceeHHHHHHHHHHHHHHH
Q 014355 391 ----RLRTRFSEVVRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 391 ----kmSkR~G~~v~L~dLlde~~~~a~~~ 416 (426)
|||||+||+|+++|++++....|.+.
T Consensus 600 ~~~~KMSKS~GN~v~p~~ii~~ygaDalRl 629 (842)
T TIGR00396 600 VGYEKMSKSKGNGIDPQEIVKKHGADALRL 629 (842)
T ss_pred cchhhhhhcCCCcCCHHHHHHHcCchHHHH
Confidence 99999999999999999988877765
No 110
>PLN02843 isoleucyl-tRNA synthetase
Probab=96.76 E-value=0.0024 Score=73.03 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=44.7
Q ss_pred EEEeeCCccc-cHHHHHHH-HHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHH
Q 014355 342 IYVTDVGQQL-HFDMVFSA-AKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLD 407 (426)
Q Consensus 342 i~V~g~~q~~-hf~~~~~~-~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLld 407 (426)
+++.|.||.. ||..+.-. +.+.|.. ++...+.| |+|.+.+|+||||+.||+|+..|+++
T Consensus 567 l~~eG~Di~rgWf~s~l~~~~~~~g~~----Pfk~v~~H---G~vld~~G~KMSKSlGNvI~p~~vi~ 627 (974)
T PLN02843 567 LYLEGSDQHRGWFQSSLLTSVATKGKA----PYKSVLTH---GFVLDEKGFKMSKSLGNVVDPRLVIE 627 (974)
T ss_pred eeeeeccccchHHHHHHHHHHHhcCCC----ccceEEEe---ccEECCCCCCcCCCCCCcCCHHHHHh
Confidence 6789999976 66665322 2334442 45566777 77999899999999999999999999
No 111
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=96.69 E-value=0.0028 Score=72.45 Aligned_cols=73 Identities=16% Similarity=0.294 Sum_probs=51.3
Q ss_pred cCCCeEEEEeeCCccc-cHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHH
Q 014355 336 EKAEWIIYVTDVGQQL-HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSK 414 (426)
Q Consensus 336 ~~~d~~i~V~g~~q~~-hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~ 414 (426)
+.+| +++.|.||.. -|+... +..++.... .++...+.| |+|++.+|+||||++||+|...|++++....+.
T Consensus 582 ~PaD--~~~eG~Di~rgWF~s~l--l~s~~~~~~-~P~k~V~~H---G~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~l 653 (961)
T PRK13804 582 WPAD--LYLEGSDQHRGWFNSSL--LESCGTRGR-APYKAVLTH---GFTLDEKGEKMSKSLGNTVSPQDVIKQSGADIL 653 (961)
T ss_pred CCce--EEEEEcccccHHHHHHH--HHHHHhcCC-CChhhEEEe---ccEECCCCCCccCCCCCcCCHHHHHHhcCHHHH
Confidence 4455 6789999965 465542 222222110 134456666 789998999999999999999999999887776
Q ss_pred HH
Q 014355 415 AV 416 (426)
Q Consensus 415 ~~ 416 (426)
+.
T Consensus 654 Rl 655 (961)
T PRK13804 654 RL 655 (961)
T ss_pred HH
Confidence 65
No 112
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=96.59 E-value=0.0026 Score=72.15 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=46.0
Q ss_pred EEEeeCCcccc-HHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHH
Q 014355 342 IYVTDVGQQLH-FDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 342 i~V~g~~q~~h-f~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~ 416 (426)
+.+.|.|+... +.++ ++..+.+... .|+...+.| |+|++.+|+|||||+||+|...|++++....|.+.
T Consensus 476 ~~~~G~Dii~~W~a~~--~~~~~~~~~~-~Pfk~v~~h---G~v~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~ 545 (874)
T PRK05729 476 VLVTGFDIIFFWVARM--IMMGLHFTGQ-VPFKDVYIH---GLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRF 545 (874)
T ss_pred cccccccccchHHHHH--HHHHHHhcCC-CchhheEEe---eeEECCCCCCcccCCCCCCCHHHHHHHhChHHHHH
Confidence 55788887542 3333 2222222110 133334444 88999999999999999999999999988877765
No 113
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.021 Score=61.84 Aligned_cols=124 Identities=17% Similarity=0.168 Sum_probs=85.5
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHH--HHHHHHhhCCCCCccccccHHHHHHHHHHhhcc
Q 014355 139 IAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGM--LIEYLFEKFPNSEDANETAIGELQEFYRRSKNR 216 (426)
Q Consensus 139 p~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~--l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~ 216 (426)
-+|.+|+||++|-|+-|++-|++-+.|..|...-..+=-|..+.- +..++-.. . ..
T Consensus 66 anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~---------------------~-~~ 123 (937)
T KOG0433|consen 66 ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTES---------------------E-GS 123 (937)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhc---------------------c-cc
Confidence 569999999999999999999999999999988888877766652 11111000 0 00
Q ss_pred cCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHHHHHHHHHCCC
Q 014355 217 FDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGVIDELSKQGL 291 (426)
Q Consensus 217 ~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-----s~~~~~v~~vi~~L~~~g~ 291 (426)
. ..-+++..| +.++...++.+++.+.|+||--||..- ..|.-.--+++..|.++|+
T Consensus 124 ~-s~leiR~~A------------------r~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgL 184 (937)
T KOG0433|consen 124 R-TPLEIRAKA------------------RIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGL 184 (937)
T ss_pred C-CcHHHHHHH------------------HHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccc
Confidence 0 011232223 446667778888999999999898421 1122234578899999999
Q ss_pred EEEeCCeEEEEe
Q 014355 292 VEESQGARVIFI 303 (426)
Q Consensus 292 ~~~~dGa~~~~~ 303 (426)
+|++..-+++..
T Consensus 185 vyR~~KPVyWSp 196 (937)
T KOG0433|consen 185 VYRSFKPVYWSP 196 (937)
T ss_pred eeccCCcceecC
Confidence 999877776643
No 114
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.0052 Score=68.37 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=38.5
Q ss_pred CCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHHH
Q 014355 371 STYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVL 417 (426)
Q Consensus 371 ~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~i 417 (426)
|+...+.| |||.+++|+||||++||+|.-.|++++.+..|...-
T Consensus 508 PFk~V~ih---GLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~ 551 (877)
T COG0525 508 PFKDVYIH---GLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFT 551 (877)
T ss_pred CccEEEEe---eeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHH
Confidence 56666666 999999999999999999999999999988887653
No 115
>PLN02563 aminoacyl-tRNA ligase
Probab=96.26 E-value=0.003 Score=71.93 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=23.8
Q ss_pred cccccCCCceeHHHHHHHHHHHHHHH
Q 014355 391 RLRTRFSEVVRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 391 kmSkR~G~~v~L~dLlde~~~~a~~~ 416 (426)
||||++||+|..++++++.+..+.+.
T Consensus 723 KMSKSKGNvVdP~eiI~kYGADaLRl 748 (963)
T PLN02563 723 KMSKSRGNVVNPDDVVSEYGADSLRL 748 (963)
T ss_pred ccccccCCcCCHHHHHHHcCcHHHHH
Confidence 99999999999999999988877665
No 116
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=96.25 E-value=0.0062 Score=70.86 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=51.7
Q ss_pred cCCCeEEEEeeCCccc-cHHHHHHHH-HHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHH
Q 014355 336 EKAEWIIYVTDVGQQL-HFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRS 413 (426)
Q Consensus 336 ~~~d~~i~V~g~~q~~-hf~~~~~~~-~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a 413 (426)
+.+|.+ +.|.||.. +|..+..+. ...|- .|+...+.| |+|++++|+|||||+||+|.-.+++++.+..|
T Consensus 672 fPaD~i--~eG~Dq~rgWf~s~l~~s~~l~~~----~PfK~VlvH---G~Vld~dG~KMSKSlGNvIDP~evI~kYGADa 742 (1205)
T PTZ00427 672 FPADFI--AEGLDQTRGWFYTLLVISTLLFDK----APFKNLICN---GLVLASDGKKMSKRLKNYPDPLYILDKYGADS 742 (1205)
T ss_pred CCceEE--EEecchhccHHHHHHHHHHHhcCC----CCcceeEEc---cEEEcCCCCCcccCCCCCCCHHHHHHhcCCcH
Confidence 344543 68888855 676653332 33443 245555666 88999999999999999999999999988776
Q ss_pred HHH
Q 014355 414 KAV 416 (426)
Q Consensus 414 ~~~ 416 (426)
...
T Consensus 743 LR~ 745 (1205)
T PTZ00427 743 LRL 745 (1205)
T ss_pred HHH
Confidence 654
No 117
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=96.21 E-value=0.01 Score=67.91 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=45.6
Q ss_pred EEEeeCCccccHHHHHHHHHH-cCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHH
Q 014355 342 IYVTDVGQQLHFDMVFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 342 i~V~g~~q~~hf~~~~~~~~~-lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~ 416 (426)
+.+.|.||-. |...+.++.. +.+.. .++...+.|. |+|+. +|+||||++||+|++.|++++....|.+.
T Consensus 576 ~~~~GkDii~-~H~~~~i~~~~a~~~~--~~~Pk~i~~~--G~vl~-~G~KMSKSlGNvI~p~d~i~~yGaDalRl 645 (938)
T TIGR00395 576 WRISGKDLIP-NHLTFYIFHHVAIFPE--KFWPRGIVVN--GYVML-EGKKMSKSKGNVLTLEQAVEKFGADVARL 645 (938)
T ss_pred EEEEeecccc-chHHHHHHHHHHcCCc--cccCcEEEEe--ceEEe-CCccccCcCCCCCCHHHHHHHcChHHHHH
Confidence 5678888742 1112223322 23321 1243467776 66886 79999999999999999999988887765
No 118
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.0045 Score=69.53 Aligned_cols=90 Identities=21% Similarity=0.254 Sum_probs=58.6
Q ss_pred EEecCCccccccccHHHHHHHHhhcCCCe---EEEEeeCCccc-cHHHHHHHH-HHcCCCCCCCCCCCcEEEEEeEEEEc
Q 014355 312 IVKSDGGFNYASTDLAALWYRLNEEKAEW---IIYVTDVGQQL-HFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLG 386 (426)
Q Consensus 312 l~ksDG~~tY~t~DiA~~~~r~~~~~~d~---~i~V~g~~q~~-hf~~~~~~~-~~lg~~~~~~~~~~~~~Hv~~g~v~~ 386 (426)
++=.-|++-|.+-. . + ....+.. =+|+=|.||+. -|..+..+. -..|- .|....+.| |++++
T Consensus 531 VWFDSGs~~~a~~~-~----~-~~~~~~~~~aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~----aPYk~vltH---GfvlD 597 (933)
T COG0060 531 VWFDSGSTPYAVLH-P----R-ENLKFPALFADFYLEGSDQTRGWFYSSLLTSTALFGR----APYKNVLTH---GFVLD 597 (933)
T ss_pred EEEcCCCCcccccC-C----c-ccccCccccCcEEEEeccccchhHHHHHHHHHHHcCC----chHHHHhhc---ccEEC
Confidence 45556777776543 1 1 1112222 24578999876 466543222 22343 245556666 88999
Q ss_pred CCCccccccCCCceeHHHHHHHHHHHHH
Q 014355 387 EDGKRLRTRFSEVVRLVDLLDEAKNRSK 414 (426)
Q Consensus 387 ~~g~kmSkR~G~~v~L~dLlde~~~~a~ 414 (426)
++|+||||+.||+|.-.|++++.+..+.
T Consensus 598 e~GrKMSKSlGN~v~P~~V~~~yGADiL 625 (933)
T COG0060 598 EKGRKMSKSLGNVVDPQDVIDKYGADIL 625 (933)
T ss_pred CCCCCccccCCCcCCHHHHHHhhCchhe
Confidence 9999999999999999999998876654
No 119
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=96.06 E-value=0.011 Score=67.15 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=33.0
Q ss_pred cEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHH
Q 014355 375 KASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 375 ~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~ 416 (426)
.+.+. |+|+. +|+||||++||+|+..|++++....|.+.
T Consensus 564 ~v~~h--G~vl~-~G~KMSKS~GNvVdp~eii~~yGaDalRl 602 (897)
T PRK12300 564 GIVVN--GFVLL-EGKKMSKSKGNVIPLRKAIEEYGADVVRL 602 (897)
T ss_pred EEEEc--ceEEE-CCccccCcCCCCCCHHHHHHHcChHHHHH
Confidence 45544 77887 79999999999999999999988877765
No 120
>PLN02882 aminoacyl-tRNA ligase
Probab=96.00 E-value=0.011 Score=68.69 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=48.8
Q ss_pred cCCCeEEEEeeCCccc-cHHHHHHHH-HHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHH
Q 014355 336 EKAEWIIYVTDVGQQL-HFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRS 413 (426)
Q Consensus 336 ~~~d~~i~V~g~~q~~-hf~~~~~~~-~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a 413 (426)
+.+| +.+.|.||.. +|..+..+. ..+|.. ++..-+.| |+|++++|+|||||.||+|...+++++.+..|
T Consensus 566 ~PaD--~i~eG~Dq~RgWf~~ll~~s~~l~~~~----pfk~Vivh---G~vlde~G~KMSKSlGNvIdP~evi~~YGADa 636 (1159)
T PLN02882 566 FPAD--FVAEGLDQTRGWFYTLMVLSTALFDKP----AFKNLICN---GLVLAEDGKKMSKSLKNYPDPNEVIDKYGADA 636 (1159)
T ss_pred CCce--EEEEecchhhhHHHHHHHHHHHhcCCC----CcceeEEc---cEEECCCCCCcccCCCCCCCHHHHHHHhCcHH
Confidence 3455 3467888755 344332222 223442 34333444 88999999999999999999999999988777
Q ss_pred HHH
Q 014355 414 KAV 416 (426)
Q Consensus 414 ~~~ 416 (426)
.+.
T Consensus 637 LR~ 639 (1159)
T PLN02882 637 LRL 639 (1159)
T ss_pred HHH
Confidence 665
No 121
>PLN02381 valyl-tRNA synthetase
Probab=95.90 E-value=0.0094 Score=68.84 Aligned_cols=61 Identities=8% Similarity=0.120 Sum_probs=40.9
Q ss_pred EEEeeCCccc-cHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHH
Q 014355 342 IYVTDVGQQL-HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDE 408 (426)
Q Consensus 342 i~V~g~~q~~-hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde 408 (426)
+++.|.||.. .|.++.- -.+.... ..|+...+.| |||++.+|+||||++||+|...|+++.
T Consensus 611 ~~~~G~Dii~~W~~rmi~--~~~~~~~-~~PFk~v~~h---G~V~D~~G~KMSKS~GNvIdP~~vi~~ 672 (1066)
T PLN02381 611 VLETGHDILFFWVARMVM--MGMQLGG-DVPFRKVYLH---PMIRDAHGRKMSKSLGNVIDPLEVING 672 (1066)
T ss_pred eeeecchhhhhHHHHHHH--HHHHhCC-CCchHHheec---ceEECCCCCCCCCCCCCCCCHHHHHhh
Confidence 3468877642 2344421 1111211 1256556666 899999999999999999999999984
No 122
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=95.81 E-value=0.0089 Score=69.03 Aligned_cols=68 Identities=10% Similarity=0.087 Sum_probs=45.6
Q ss_pred EEEeeCCccc-cHHHHHHHH-HHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHH
Q 014355 342 IYVTDVGQQL-HFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 342 i~V~g~~q~~-hf~~~~~~~-~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~ 416 (426)
+++.|.|+.. +|.++..+. ...|.. |+...+.| |+|++.+|+||||++||+|...|+++.....+.+.
T Consensus 494 ~~~~G~Dii~~W~a~~l~~~~~~~~~~----Pfk~V~~h---G~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~ 563 (1052)
T PRK14900 494 VMETGHDIIFFWVARMMMMGLHFMGEV----PFRTVYLH---PMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRF 563 (1052)
T ss_pred hhcccccHHhHHHHHHHHHHHHhcCCC----ccceeEec---ccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHH
Confidence 5578877743 222221111 122332 33344555 88999899999999999999999999988777665
No 123
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.80 E-value=0.021 Score=58.87 Aligned_cols=51 Identities=16% Similarity=0.064 Sum_probs=36.7
Q ss_pred EEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCce
Q 014355 342 IYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 400 (426)
Q Consensus 342 i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v 400 (426)
+-+-|.||..-+--=..+.+.+|+. .....|+|. +.+.+|.||||+.|+.+
T Consensus 183 lq~GG~DQ~~ni~~grdl~rr~g~~------~~~~lt~PL--L~~ldG~KmgKs~~~a~ 233 (401)
T COG0162 183 LQLGGSDQWGNILAGRDLIRRLGQK------KVVGLTTPL--LTGLDGKKMGKSEGGAV 233 (401)
T ss_pred hhcCChHHHHHHHHHHHHHHHhCCC------CeEEEEecc--ccCCCCCcccccCCCce
Confidence 4456888866554445777788873 345677755 88889999999999844
No 124
>PLN02943 aminoacyl-tRNA ligase
Probab=95.74 E-value=0.011 Score=67.75 Aligned_cols=69 Identities=13% Similarity=0.131 Sum_probs=45.9
Q ss_pred EEEeeCCccccHHHHHHHHHHcCCCC-CCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHH
Q 014355 342 IYVTDVGQQLHFDMVFSAAKRAGWLS-ADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 342 i~V~g~~q~~hf~~~~~~~~~lg~~~-~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~ 416 (426)
+++.|.|+...... -+-++|... ...|+...+.| |+|.+.+|+||||++||+|+..|++++....|...
T Consensus 539 l~~~G~Dii~fW~a---~m~~~~~~~~~~~Pf~~v~~h---g~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~ 608 (958)
T PLN02943 539 VLETGHDILFFWVA---RMVMMGIEFTGTVPFSYVYLH---GLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRF 608 (958)
T ss_pred EEEEeehHHHHHHH---HHHHhhhhhcCCCChheEEEe---ccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHH
Confidence 55788887532221 111223310 01134455666 77998899999999999999999999887777664
No 125
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.59 E-value=0.012 Score=57.81 Aligned_cols=87 Identities=15% Similarity=0.060 Sum_probs=57.3
Q ss_pred Ccccccc---ccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcccc
Q 014355 317 GGFNYAS---TDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLR 393 (426)
Q Consensus 317 G~~tY~t---~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmS 393 (426)
|..+|.. .|+-+ +. ..+++|.+ .+|.||..|+.--..+++.++..+ .+...+.+ ++.+.+|.|||
T Consensus 133 ~~~~Yp~lQaaD~l~-l~--~~~~~~~v--p~G~DQ~~~i~l~rdla~r~n~~~-----~p~~l~~p--~l~~l~G~KMS 200 (273)
T cd00395 133 TEFTYPPLQAADFLL-LN--TTEGCDIQ--PGGSDQWGNITLGRELARRFNGFT-----IAEGLTIP--LVTKLDGPKFG 200 (273)
T ss_pred hhhhhHHHHHHHHHH-Hh--cccCCcEE--EecHHHHHHHHHHHHHHHHhCCCC-----CCeEEeec--cccCCCCCcCC
Confidence 4566764 34332 11 13455555 599999999998889998885311 23344444 48888899999
Q ss_pred ccCCCceeHHHHHHHHHHHHHH
Q 014355 394 TRFSEVVRLVDLLDEAKNRSKA 415 (426)
Q Consensus 394 kR~G~~v~L~dLlde~~~~a~~ 415 (426)
|+.|+.+.++.+.|...+-.++
T Consensus 201 KS~~~~i~l~~~~dsp~~i~~k 222 (273)
T cd00395 201 KSESGPKWLDTEKTSPYEFYQF 222 (273)
T ss_pred CCCCCCccccccCCCHHHHHHH
Confidence 9999999887666654443333
No 126
>PLN02959 aminoacyl-tRNA ligase
Probab=95.30 E-value=0.025 Score=65.63 Aligned_cols=34 Identities=9% Similarity=0.247 Sum_probs=30.0
Q ss_pred EEEEcCCCccccccCCCceeHHHHHHHHHHHHHHH
Q 014355 382 GLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 382 g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~ 416 (426)
|+|+ .+|+||||++||+|++.|++++....|.+.
T Consensus 710 G~V~-~~G~KMSKSkGNvI~p~diI~kyGADalRl 743 (1084)
T PLN02959 710 GHLM-LNSEKMSKSTGNFLTLRQAIEEFSADATRF 743 (1084)
T ss_pred cEEe-cCCcCccccCCCcCCHHHHHHHhCchHHHH
Confidence 7788 689999999999999999999988777664
No 127
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=95.18 E-value=0.015 Score=66.86 Aligned_cols=60 Identities=8% Similarity=0.110 Sum_probs=39.5
Q ss_pred EEEeeCCcccc-HHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHH
Q 014355 342 IYVTDVGQQLH-FDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLD 407 (426)
Q Consensus 342 i~V~g~~q~~h-f~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLld 407 (426)
++|.|.|+... |.++ ++..+++.+ ..|+...+.| |+|.+.+|+||||++||+|...|+++
T Consensus 541 ~~~~G~Dii~~W~arm--~~~~~~~~~-~~Pfk~v~~H---G~v~d~~G~KMSKSlGNvIdP~~ii~ 601 (995)
T PTZ00419 541 LLETGSDILFFWVARM--VMMSLHLTD-KLPFKTVFLH---AMVRDSQGEKMSKSKGNVIDPLEVIE 601 (995)
T ss_pred EEEechhHHhHHHHHH--HHHHHHhcC-CCChHHHhcc---ceEECCCCCCcccCCCCcCChHHHhc
Confidence 56788776432 2333 222222221 1234445555 88999999999999999999999988
No 128
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.02 E-value=0.089 Score=55.30 Aligned_cols=43 Identities=16% Similarity=-0.011 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCcee-eeccccccCcHHHHHHHHHHCCCEEEeC
Q 014355 254 KEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDELSKQGLVEESQ 296 (426)
Q Consensus 254 ~~~~~~~~~Lgi~fd-~~~Es~~~~~v~~vi~~L~~~g~~~~~d 296 (426)
..+.++++.|||..| +..-|.|-+.+.....+|...|-+|.+|
T Consensus 253 ~~IleDl~~LgIkpd~~TyTSDyF~~i~dycv~likeGKAYvDD 296 (712)
T KOG1147|consen 253 DVILEDLSLLGIKPDRVTYTSDYFDEIMDYCVKLIKEGKAYVDD 296 (712)
T ss_pred HHHHHHHHHhCcCcceeeechhhHHHHHHHHHHHHhcCcccccC
Confidence 455668999999975 3345666667777778888888888643
No 129
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.90 E-value=0.019 Score=56.27 Aligned_cols=59 Identities=14% Similarity=0.163 Sum_probs=44.2
Q ss_pred EeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHH
Q 014355 344 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKN 411 (426)
Q Consensus 344 V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~ 411 (426)
++|.||..|+..-..+++.+++. .+...| ..++.+.+|.||||+.|+.+. ..+.|...+
T Consensus 156 ~~G~DQ~~~i~~~rd~a~r~~~~------~~~~l~--~~ll~~l~G~KMSKS~~~~~~-i~l~dsp~~ 214 (269)
T cd00805 156 LGGSDQRGNITLGRDLIRKLGYK------KVVGLT--TPLLTGLDGGKMSKSEGNAIW-DPVLDSPYD 214 (269)
T ss_pred EecHHHHHHHHHHHHHHHHhCCC------CcEEEe--eccccCCCCCcccCCCCCccc-ccCCCCHHH
Confidence 69999999999989999999873 122333 355888899999999999985 444444333
No 130
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.40 E-value=0.16 Score=54.87 Aligned_cols=130 Identities=21% Similarity=0.256 Sum_probs=82.0
Q ss_pred eEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHH
Q 014355 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (426)
Q Consensus 129 kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (426)
+....=..|=-||-.|-||+-+..|-|++-|..-..||.|.|.+..+=.|..+..-+ ++.... .+.+ +
T Consensus 39 ~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eI----DKkLgI--~g~~------d 106 (1070)
T KOG0434|consen 39 KFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEI----DKKLGI--TGRD------D 106 (1070)
T ss_pred ceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceee----chhcCC--CCHH------H
Confidence 445555677889999999999999999999999999999999999999998775221 000000 0011 1
Q ss_pred HHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCC--ceeeeccccccC---cHHHHH
Q 014355 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRV--DLEEKGESFYNP---YIPGVI 283 (426)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi--~fd~~~Es~~~~---~v~~vi 283 (426)
+.+-...+ .-.++ +.++-.+-.+-+++..|||= .|+-...++|.. .+=-++
T Consensus 107 V~kmGI~k------YN~EC------------------R~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvF 162 (1070)
T KOG0434|consen 107 VMKMGIDK------YNNEC------------------RKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVF 162 (1070)
T ss_pred HHHHhHHh------HhHHH------------------HHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHH
Confidence 11111111 11123 34444445566677888874 452111344433 344678
Q ss_pred HHHHHCCCEEE
Q 014355 284 DELSKQGLVEE 294 (426)
Q Consensus 284 ~~L~~~g~~~~ 294 (426)
++|.++|++|+
T Consensus 163 keL~~kglVYR 173 (1070)
T KOG0434|consen 163 KELHEKGLVYR 173 (1070)
T ss_pred HHHHhcCceec
Confidence 99999999997
No 131
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=93.75 E-value=0.065 Score=54.09 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=47.8
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEE---EEEeEEEEcCCCccccccCCCceeHHHHHHHHHHH
Q 014355 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKAS---HVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNR 412 (426)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~---Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~ 412 (426)
+++|.+ .+|.||..|+.--+.+++.++..-......+... |. .++.+-+|+||||+.++.|.|.|==+++.+.
T Consensus 148 ~~~d~V--pvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~--~~l~gLdg~KMSKS~~n~I~L~D~p~~I~kK 223 (332)
T PRK12556 148 FQATHV--PVGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEG--AILPGLDGRKMSKSYGNVIPLFAEQEKLRKL 223 (332)
T ss_pred ccCCEE--EeccccHHHHHHHHHHHHHHHHhccccCCCceecccccc--ccccCCCCCCCCCCCCCcccccCCHHHHHHH
Confidence 566766 4999999999988999988772000000112222 44 3366677889999999999886544444444
Q ss_pred HH
Q 014355 413 SK 414 (426)
Q Consensus 413 a~ 414 (426)
.+
T Consensus 224 I~ 225 (332)
T PRK12556 224 IF 225 (332)
T ss_pred HH
Confidence 33
No 132
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=93.70 E-value=0.056 Score=60.90 Aligned_cols=66 Identities=18% Similarity=0.322 Sum_probs=44.3
Q ss_pred EEEeeCCcc-ccH--HHH-HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHH
Q 014355 342 IYVTDVGQQ-LHF--DMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 342 i~V~g~~q~-~hf--~~~-~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~ 416 (426)
+|+.|.||+ .|+ .+. ..++..+|+.+...|+ ..+.|. |+| ||||++||+|+..|++++....|.+.
T Consensus 526 ly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pf-k~v~~~--G~v------KMSKS~GN~i~p~~~i~~ygaD~lRl 595 (805)
T PRK00390 526 QYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPF-KKLLTQ--GMV------KMSKSKGNVVDPDDIIEKYGADTARL 595 (805)
T ss_pred EEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcch-hhheec--CcE------EeCCCCCCCCCHHHHHHHcChHHHHH
Confidence 467888874 332 122 2455555643222244 345565 667 89999999999999999988888776
No 133
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.28 E-value=0.11 Score=53.14 Aligned_cols=117 Identities=17% Similarity=0.350 Sum_probs=90.8
Q ss_pred CCCceEEEEecCCCcCCCccchhHHHHHH-HHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccH
Q 014355 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTII-GDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAI 203 (426)
Q Consensus 125 ~~~~kV~VE~~SpNp~~plHiGHlRsaii-GD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i 203 (426)
.+...++|--+-|-.+...|+|++-..++ +|+.||..+..|+...+....+.+|+...+-+.
T Consensus 11 ~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkal----------------- 73 (567)
T KOG1247|consen 11 PNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKAL----------------- 73 (567)
T ss_pred CCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHH-----------------
Confidence 45667888888888889999999887776 999999999999999999999999887653221
Q ss_pred HHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecccc---ccCcH
Q 014355 204 GELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSG-EPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESF---YNPYI 279 (426)
Q Consensus 204 ~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~g-d~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~Es~---~~~~v 279 (426)
|+| .| +++|+.....++..|+-++|.||+++..- ..+..
T Consensus 74 -------------------------------eeg~tP------~elcdKyh~ihk~vy~Wf~IdfD~fgrtTT~~qT~i~ 116 (567)
T KOG1247|consen 74 -------------------------------EEGLTP------QELCDKYHGIHKVVYDWFKIDFDEFGRTTTKTQTEIC 116 (567)
T ss_pred -------------------------------HccCCH------HHHHHhcchhHHHHHHhhcccccccCcccCcchhHHH
Confidence 111 11 34666677778889999999999987632 24568
Q ss_pred HHHHHHHHHCCCEEEe
Q 014355 280 PGVIDELSKQGLVEES 295 (426)
Q Consensus 280 ~~vi~~L~~~g~~~~~ 295 (426)
+.++.+|.++|++.++
T Consensus 117 Q~iF~kl~~ng~~se~ 132 (567)
T KOG1247|consen 117 QDIFSKLYDNGYLSEQ 132 (567)
T ss_pred HHHhhchhhcCCcccc
Confidence 8999999999877653
No 134
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=93.26 E-value=0.05 Score=53.76 Aligned_cols=74 Identities=19% Similarity=0.247 Sum_probs=52.6
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCc-cccccCCC-ceeHHHHHHHHHHHH
Q 014355 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTRFSE-VVRLVDLLDEAKNRS 413 (426)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~-kmSkR~G~-~v~L~dLlde~~~~a 413 (426)
.++| +=++|.||..|+.--..+++.+|... ....+...|. .++.+.+|. ||||+.+| .|.|.|=-+++.+..
T Consensus 148 l~~~--~~~~G~DQ~~~~~l~rd~a~k~~~~~--~~~~p~~l~~--~~l~~l~G~~KMSKS~~ns~I~L~d~~~~i~~Ki 221 (292)
T PF00579_consen 148 LKAD--LVPGGIDQRGHIELARDLARKFNYKE--IFPKPAGLTS--PLLPGLDGQKKMSKSDPNSAIFLDDSPEEIRKKI 221 (292)
T ss_dssp TTHS--EEEEEGGGHHHHHHHHHHHHHHTHHS--TSSS-EEEEE--TCBBSTTSSSBTTTTTTGGS-BTTTTHHHHHHHH
T ss_pred eccc--cccccchHHHHHHHHHHHHhhhcccc--cccCchheee--ccccccCCccccCccCCccEEEEeccchhHHHHH
Confidence 4556 33699999999999899999988730 0112344444 457788888 99999999 999988777766655
Q ss_pred HH
Q 014355 414 KA 415 (426)
Q Consensus 414 ~~ 415 (426)
..
T Consensus 222 ~~ 223 (292)
T PF00579_consen 222 KK 223 (292)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 135
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.04 E-value=0.078 Score=52.87 Aligned_cols=93 Identities=18% Similarity=0.217 Sum_probs=55.4
Q ss_pred CccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC-cccccc
Q 014355 317 GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG-KRLRTR 395 (426)
Q Consensus 317 G~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g-~kmSkR 395 (426)
|-.+|..-=.|-++ .++.+.| =+|.||+.|+..-+.+++.++..-..--..+...+.--..|.+-+| +||||+
T Consensus 129 Gl~~YPvlqAADIL----l~~a~~V--PVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~~KMSkS 202 (314)
T COG0180 129 GLLTYPVLQAADIL----LYQATLV--PVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGPGKMSKS 202 (314)
T ss_pred cchhccHHHHHHhh----hccCCee--ccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCCCccccc
Confidence 66677743333221 3455444 5899999999999999999872100000112222221024555556 799999
Q ss_pred CCC-ceeHHHHHHHHHHHHHH
Q 014355 396 FSE-VVRLVDLLDEAKNRSKA 415 (426)
Q Consensus 396 ~G~-~v~L~dLlde~~~~a~~ 415 (426)
.+| +|.|.|==+++.+..++
T Consensus 203 ~~ns~I~L~D~~~~i~kKI~~ 223 (314)
T COG0180 203 DPNSAIFLLDDPKTIRKKIKK 223 (314)
T ss_pred CCCCeeeccCCHHHHHHHHHH
Confidence 999 88886655665555544
No 136
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=92.20 E-value=0.17 Score=52.64 Aligned_cols=78 Identities=18% Similarity=0.170 Sum_probs=50.5
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCC--CCC--CCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL--SAD--DSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK 410 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~--~~~--~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~ 410 (426)
.+++|.+- +|.||..|..--+.+++.++.. .+. .|......|. -+|.+-+|+||||+.||.|.|.|=-+++.
T Consensus 146 ly~ad~VP--VG~DQ~qHlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~--~~I~gLdg~KMSKS~~n~I~L~Ds~~~I~ 221 (431)
T PRK12284 146 MFNAHKVP--VGRDQIQHIEMARDIAQRFNHLYGGEFFVLPEAVIEESV--ATLPGLDGRKMSKSYDNTIPLFAPREELK 221 (431)
T ss_pred hcCCCEEE--EcchhHHHHHHHHHHHHHHhhhcCCcccCCCcccccccc--ccccCCCCccccCCCCCEeeecCCHHHHH
Confidence 35677774 9999999999888999887631 000 0111112233 34666678899999999998876555555
Q ss_pred HHHHHH
Q 014355 411 NRSKAV 416 (426)
Q Consensus 411 ~~a~~~ 416 (426)
+..+..
T Consensus 222 kKI~~A 227 (431)
T PRK12284 222 KAIFSI 227 (431)
T ss_pred HHHhcC
Confidence 554443
No 137
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.68 E-value=0.99 Score=49.50 Aligned_cols=63 Identities=19% Similarity=0.124 Sum_probs=56.3
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYL 188 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~ 188 (426)
...|..+-|.-|..+|.||+||+-|.-=-|+-+-.-|..|++|..-+...=.|..|.-.+.-+
T Consensus 42 ~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdKL 104 (1080)
T KOG0437|consen 42 SKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKL 104 (1080)
T ss_pred ccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHHH
Confidence 356899999999999999999999999999999999999999999999999998887655434
No 138
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=91.39 E-value=0.21 Score=50.44 Aligned_cols=93 Identities=20% Similarity=0.242 Sum_probs=56.7
Q ss_pred CccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEe-EEEEcCCCc--ccc
Q 014355 317 GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGF-GLVLGEDGK--RLR 393 (426)
Q Consensus 317 G~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~-g~v~~~~g~--kmS 393 (426)
|..+|..-=.|-.+ .+++|.+ .+|.||..|+..-+.+++.++..-...-..+...|..+ .++.+-+|. |||
T Consensus 122 g~~~YP~lQaaDil----~~~~div--pvG~DQ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMS 195 (333)
T PRK00927 122 GLFTYPVLMAADIL----LYKADLV--PVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMS 195 (333)
T ss_pred HhhhcHHHHHHHHH----hcCCCEE--eeccchHHHHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCC
Confidence 66777742222111 2467766 49999999999989999888741000001233333322 345555554 999
Q ss_pred ccCC---CceeHHHHHHHHHHHHHH
Q 014355 394 TRFS---EVVRLVDLLDEAKNRSKA 415 (426)
Q Consensus 394 kR~G---~~v~L~dLlde~~~~a~~ 415 (426)
|+.+ +.|.|.|=-+++.+...+
T Consensus 196 KS~~~~~~~I~l~D~~~~I~~KI~~ 220 (333)
T PRK00927 196 KSDPNDNNTINLLDDPKTIAKKIKK 220 (333)
T ss_pred CCCCCCCCeEEeeCCHHHHHHHHHh
Confidence 9999 899997755555555544
No 139
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=91.02 E-value=0.22 Score=50.32 Aligned_cols=91 Identities=16% Similarity=0.162 Sum_probs=54.0
Q ss_pred CccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcC--CCCCCCC-CCCcEEEEEeEEEEcCCC-ccc
Q 014355 317 GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAG--WLSADDS-TYPKASHVGFGLVLGEDG-KRL 392 (426)
Q Consensus 317 G~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg--~~~~~~~-~~~~~~Hv~~g~v~~~~g-~km 392 (426)
|..+|..-=.|-++ .++.|.+ .+|.||..|+.-.+.+++.++ +..+... ......|.+ +|.+-+| .||
T Consensus 126 g~l~YP~lqaaDIl----~~~~d~v--pvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~--~i~~L~g~~KM 197 (333)
T PRK12282 126 GFLTYPVSQAADIT----AFKATLV--PVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAG--RLPGLDGKAKM 197 (333)
T ss_pred hhhcchHHHHHHHH----hhCCCEE--EeccccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCC--cccCCCCCCcC
Confidence 66677742212111 2466666 499999999999999999888 3210000 000111222 3444444 699
Q ss_pred cccCCCceeHHHHHHHHHHHHHH
Q 014355 393 RTRFSEVVRLVDLLDEAKNRSKA 415 (426)
Q Consensus 393 SkR~G~~v~L~dLlde~~~~a~~ 415 (426)
||+.++.|.|.|=-+++.+...+
T Consensus 198 SKS~~~~I~L~D~pe~I~kKI~~ 220 (333)
T PRK12282 198 SKSLGNAIYLSDDADTIKKKVMS 220 (333)
T ss_pred CCCCCCeeeeeCCHHHHHHHHHh
Confidence 99999999887755555554443
No 140
>PLN02486 aminoacyl-tRNA ligase
Probab=89.25 E-value=0.31 Score=50.17 Aligned_cols=63 Identities=21% Similarity=0.278 Sum_probs=43.2
Q ss_pred EeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC--ccccccCCC-ceeHHHHHHHHHHHHH
Q 014355 344 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDEAKNRSK 414 (426)
Q Consensus 344 V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g--~kmSkR~G~-~v~L~dLlde~~~~a~ 414 (426)
=+|.||+.||.--..+++.+|+. .+.+.|..+ +-+-.| .||||+.+| +|.|.|=-+++.+..+
T Consensus 224 PvG~DQd~~~~ltRdia~r~~~~------kp~~~~~~~--lp~L~g~~~KMSkS~~nsaI~L~D~p~~i~~KI~ 289 (383)
T PLN02486 224 PCAIDQDPYFRMTRDVAPRLGYY------KPALIESRF--FPALQGESGKMSASDPNSAIYVTDTPKEIKNKIN 289 (383)
T ss_pred ecccchHHHHHHHHHHHHHhCCC------Ccceecccc--ccCCCCCCCcCcCcCCCCeeeccCCHHHHHHHHh
Confidence 46999999999999999999874 234545433 332233 599999987 6999874444444433
No 141
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.88 E-value=0.29 Score=54.28 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=28.5
Q ss_pred CCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHH
Q 014355 371 STYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLD 407 (426)
Q Consensus 371 ~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLld 407 (426)
|+...+.| +||++..|+||||+.||+|.--|+|+
T Consensus 576 PF~~V~LH---~mVRDa~GRKMSKSLGNVIDPlDVI~ 609 (995)
T KOG0432|consen 576 PFKEVLLH---GLVRDAHGRKMSKSLGNVIDPLDVID 609 (995)
T ss_pred Cchheeec---hhhccccccccchhhccccCHHHHhc
Confidence 44445555 88999999999999999998888887
No 142
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.71 E-value=0.61 Score=51.01 Aligned_cols=63 Identities=24% Similarity=0.327 Sum_probs=42.9
Q ss_pred CCeEE--EEeeCCccc-cHHHHH--HHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHH
Q 014355 338 AEWII--YVTDVGQQL-HFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDE 408 (426)
Q Consensus 338 ~d~~i--~V~g~~q~~-hf~~~~--~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde 408 (426)
.+.+. |.-|.||+. -||... .++-. +. .|....+.| |++.+++|.||||+.||+|.-+.+++-
T Consensus 563 ~~~~aDv~LEG~DQ~rGWFQSsLLTsvA~q-~k----APYk~vivH---GFtlDE~G~KMSKSlGNVidP~~v~~G 630 (937)
T KOG0433|consen 563 REHVADVYLEGVDQFRGWFQSSLLTSVAVQ-NK----APYKKVIVH---GFTLDENGNKMSKSLGNVVDPTMVTDG 630 (937)
T ss_pred CCcceeeEEecchhcchHHHHHHHHHHHHh-cc----CCchheeee---eeEecCCccchhhcccCcCCHHHHhCC
Confidence 44444 456788765 577542 22211 11 144566777 779999999999999999999888875
No 143
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=87.14 E-value=0.66 Score=47.83 Aligned_cols=34 Identities=12% Similarity=0.339 Sum_probs=24.1
Q ss_pred EEEEcCCCccccccCCCceeHHHHHHHHHHHHHH
Q 014355 382 GLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKA 415 (426)
Q Consensus 382 g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~ 415 (426)
..|.+-+|+||||+.++.|.|.|=-+++.+..+.
T Consensus 255 ~~I~gLdg~KMSKS~~n~I~L~Ds~~~I~kKI~~ 288 (398)
T PRK12283 255 SKMPGLDGQKMSKSYGNTIGLREDPESVTKKIRT 288 (398)
T ss_pred CcccCCCCCcCCCCCCCeeeCcCCHHHHHHHHHh
Confidence 3466667889999999999987755555554443
No 144
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.94 E-value=1.5 Score=47.04 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=49.2
Q ss_pred CceEEEEecCCCcCCCccchhHHHHH----------------------------HHHHHHHHHHHCCCeeEEecccCCch
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTI----------------------------IGDSLARMLEFSNVEVLRRNHVGDWG 178 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsai----------------------------iGD~Larll~~~G~~V~~~~yv~D~G 178 (426)
|++|+ -=..|-|+|-|||||+.... ..++|..+.+++||+..++.|--|+=
T Consensus 246 GGkV~-TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~WLG~~P~kvTysSDyF 324 (764)
T KOG1148|consen 246 GGKVV-TRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAWLGFEPYKVTYSSDYF 324 (764)
T ss_pred CCeeE-EeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHHhCCCceeeecchhHH
Confidence 45664 44579999999999987643 45899999999999999999999997
Q ss_pred hHHHHHHHHH
Q 014355 179 TQFGMLIEYL 188 (426)
Q Consensus 179 ~Q~~~l~~~~ 188 (426)
-|+-.++.-+
T Consensus 325 dqLy~~av~L 334 (764)
T KOG1148|consen 325 DQLYELAVEL 334 (764)
T ss_pred HHHHHHHHHH
Confidence 7777666433
No 145
>PLN02886 aminoacyl-tRNA ligase
Probab=78.88 E-value=3 Score=43.06 Aligned_cols=78 Identities=21% Similarity=0.205 Sum_probs=47.3
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCC--CC---------CCC-CCCcEEEEE-eEEE-EcCCC-ccccccCC---
Q 014355 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL--SA---------DDS-TYPKASHVG-FGLV-LGEDG-KRLRTRFS--- 397 (426)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~--~~---------~~~-~~~~~~Hv~-~g~v-~~~~g-~kmSkR~G--- 397 (426)
+++|.+ -+|.||..|+.--+.+++.++.. .+ ... ..+...|-+ ...| -+.+| .||||+..
T Consensus 183 ~~a~~V--PVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~ 260 (389)
T PLN02886 183 YQADLV--PVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQ 260 (389)
T ss_pred cCCCeE--EEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCC
Confidence 567766 49999999999989999887631 00 000 011222211 1123 33344 59999984
Q ss_pred CceeHHHHHHHHHHHHHH
Q 014355 398 EVVRLVDLLDEAKNRSKA 415 (426)
Q Consensus 398 ~~v~L~dLlde~~~~a~~ 415 (426)
+.|.|.|=-+++.+..+.
T Consensus 261 s~I~L~Ds~e~I~kKI~~ 278 (389)
T PLN02886 261 SRINLLDPPDVIANKIKR 278 (389)
T ss_pred CeEEecCCHHHHHHHHhc
Confidence 699997766666666554
No 146
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=78.47 E-value=2.4 Score=46.84 Aligned_cols=71 Identities=11% Similarity=0.074 Sum_probs=47.1
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC-CC-ccccccC-CCceeHHHHHHHHHHH
Q 014355 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DG-KRLRTRF-SEVVRLVDLLDEAKNR 412 (426)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~-~g-~kmSkR~-G~~v~L~dLlde~~~~ 412 (426)
+++|.+. +|.||..|+.-.+.+++.+|..+ .+.+.|.+ ++.+- +| .||||+. ++.|.|.|==+++.+.
T Consensus 174 l~adivp--vG~DQ~qh~eLaRdia~~~g~~~-----kpvil~~~--~LpGL~gg~~KMSKS~p~naI~L~Dspe~I~kK 244 (682)
T PTZ00348 174 LKADICQ--LGLDQRKVNMLAREYCDLIGRKL-----KPVILSHH--MLAGLKQGQAKMSKSDPDSAIFMEDTEEDVARK 244 (682)
T ss_pred cCCCEEE--eCccHHHHHHHHHHHHHHhCCCC-----Cceecccc--cCcCCCCCCCcCCCCCCCCeecccCCHHHHHHH
Confidence 4677654 89999999987788888888521 22333433 35433 23 5999998 6899997755555555
Q ss_pred HHH
Q 014355 413 SKA 415 (426)
Q Consensus 413 a~~ 415 (426)
.+.
T Consensus 245 I~k 247 (682)
T PTZ00348 245 IRQ 247 (682)
T ss_pred HHh
Confidence 443
No 147
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=72.80 E-value=3.4 Score=40.42 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=27.4
Q ss_pred ecCCCcCC-CccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 134 FSSPNIAK-EMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 134 ~~SpNp~~-plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
|++--||| .+|+||+-.. ..+.++.+ .|++|. ..|+||
T Consensus 4 y~G~~PTg~~lHLG~~~~~---~~~~~lq~-~g~~~~--ilI~D~ 42 (269)
T cd00805 4 YIGFDPTAPSLHLGHLVPL---MKLRDFQQ-AGHEVI--VLIGDA 42 (269)
T ss_pred EEeeCCCCCcccHHHHHHH---HHHHHHHH-CCCeEE--EEECCC
Confidence 67788999 8999998753 25666666 498874 456665
No 148
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.57 E-value=20 Score=28.12 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=45.9
Q ss_pred hHhHHHHHHHHHHHHHHhc-CCCCCCCccccc--c--cC-C-CCccccchhhHHHHHhhcCCCCCCCChHHHHHHHHHhC
Q 014355 8 TGNVKRELEKVFDLALKAT-VPNETDVRPLIA--A--CT-A-KFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNL 80 (426)
Q Consensus 8 ~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~--~--~~-~-~~GD~~t~~a~~lak~~k~~~~~~~~P~~iA~~l~~~l 80 (426)
|+.+++.++..|..++... +|... ...++. | |+ + +-|+.+.. |+.++|.+-...-..++|.++|..|+++.
T Consensus 1 ~m~v~~e~~~qiv~~~k~a~fPInn-~~eL~~ALP~G~dttc~~G~~e~t-A~E~~kLlT~~DFPfk~a~~vad~iv~~~ 78 (80)
T COG4746 1 MMTVREEIREQIVEALKGADFPINN-PEELVAALPSGPDTTCESGGVEVT-AAEAGKLLTDADFPFKSAEQVADTIVNKA 78 (80)
T ss_pred CccHHHHHHHHHHHHHccCCCCCCC-HHHHHHhccCCCCCCccCCCeeee-HHHHHhhccccCCCCCCHHHHHHHHHHhc
Confidence 4567888888888888742 33211 111221 1 22 1 56777665 78888877655556799999999999875
No 149
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=62.73 E-value=6.5 Score=38.71 Aligned_cols=40 Identities=18% Similarity=0.376 Sum_probs=26.5
Q ss_pred EEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 132 VDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 132 VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
.=|++--|||+||+||+-... .+.++.+ .|++|... |+||
T Consensus 7 ~~y~G~~PTg~lHlG~l~~~~---~~~~lq~-~g~~~~i~--iaD~ 46 (292)
T PF00579_consen 7 RVYTGIDPTGDLHLGHLVPIM---KLIWLQK-AGFKVIIL--IADL 46 (292)
T ss_dssp EEEEEEESSSS-BHHHHHHHH---HHHHHHH-TTSEEEEE--EEHH
T ss_pred EEEEeECCCCcccchHHHHHH---HHHHHHh-cCCccceE--ecch
Confidence 347888999999999976653 3344443 78887754 4554
No 150
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=59.61 E-value=6.3 Score=43.56 Aligned_cols=24 Identities=4% Similarity=0.167 Sum_probs=20.3
Q ss_pred CccccccCCCceeHHHHHHHHHHH
Q 014355 389 GKRLRTRFSEVVRLVDLLDEAKNR 412 (426)
Q Consensus 389 g~kmSkR~G~~v~L~dLlde~~~~ 412 (426)
++||||+.||+.||++-+++-...
T Consensus 708 sEKMSKSTGNfmTL~qaieKFgad 731 (1080)
T KOG0437|consen 708 SEKMSKSTGNFMTLEQAIEKFGAD 731 (1080)
T ss_pred chhhccccCCeeeHHHHHHHhCcc
Confidence 568999999999999998875443
No 151
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.10 E-value=4.2 Score=44.55 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=30.6
Q ss_pred EEEEcCCCccccccCCCceeHHHHHHHHHHHHHH
Q 014355 382 GLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKA 415 (426)
Q Consensus 382 g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~ 415 (426)
|+|+-++|+|||||.-|+-.-..++++.+..|..
T Consensus 592 GlVLAeDG~KMSKrlkNYPdP~~iinkYGADalR 625 (1070)
T KOG0434|consen 592 GLVLAEDGKKMSKRLKNYPDPSLIINKYGADALR 625 (1070)
T ss_pred eeEEecccHHHhhhhhcCCCHHHHHHhhcchhee
Confidence 8999999999999999999988999988877754
No 152
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=57.10 E-value=12 Score=36.64 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=23.2
Q ss_pred ecCCCcCC-CccchhHHHHHHHHHHHHHHHHCCCeeEEe
Q 014355 134 FSSPNIAK-EMHVGHLRSTIIGDSLARMLEFSNVEVLRR 171 (426)
Q Consensus 134 ~~SpNp~~-plHiGHlRsaiiGD~Larll~~~G~~V~~~ 171 (426)
|++--||| .||+||+-. =...+-|+..|+++...
T Consensus 3 y~G~~PTg~~lHlGh~~~----l~~~~~lq~~g~~~~~~ 37 (273)
T cd00395 3 YCGIDPTADSLHIGHLIG----LLTFRRFQHAGHRPIFL 37 (273)
T ss_pred EEeEcCCCCCccHHHHHH----HHHHHHHHHCCCCEEEE
Confidence 66778999 699999654 22333445579987653
No 153
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=56.33 E-value=9.7 Score=42.20 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=28.6
Q ss_pred EEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 132 VDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 132 VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
.=|++--|||++|+||+ ++|-.-.+.+...||+| .+.|.||
T Consensus 34 rv~sGi~PTG~lHLGng---~~~aik~~~~~q~g~~~--~~lIAD~ 74 (682)
T PTZ00348 34 RCYDGFEPSGRMHIAQG---IFKAVNVNKCTQAGCEF--VFWVADW 74 (682)
T ss_pred EEEEeeCCCCcCeeccH---HHHHHHHHHHHhCCCeE--EEEEcch
Confidence 34899999999999993 55633333445678875 4557776
No 154
>PLN02886 aminoacyl-tRNA ligase
Probab=48.69 E-value=12 Score=38.59 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=28.0
Q ss_pred EEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 132 VDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 132 VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
+=|++--|+|.+|+||.-.++ .-...+-+ |+++ .+.|-||
T Consensus 48 ~v~sGiqPSG~lHLGnylGai--~~~v~lQ~--~~~~--~~~IADl 87 (389)
T PLN02886 48 RVVSGVQPTGSIHLGNYLGAI--KNWVALQE--TYDT--FFCVVDL 87 (389)
T ss_pred eEEEEECCCCccHHHHHHHHH--HHHHHHhc--cCCE--EEEEecH
Confidence 468899999999999976654 33334433 7776 3667776
No 155
>PLN02486 aminoacyl-tRNA ligase
Probab=44.35 E-value=29 Score=35.84 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=25.9
Q ss_pred EecCCCcCCC-ccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 133 DFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 133 E~~SpNp~~p-lHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
=|++--|+|+ ||+||+ +.-..+..+-++.|..|.-. +.|+
T Consensus 76 vYtG~~PSg~~lHlGHl---v~~~~~~~lQ~~~~~~~~I~--iaD~ 116 (383)
T PLN02486 76 LYTGRGPSSEALHLGHL---IPFMFTKYLQDAFKVPLVIQ--LTDD 116 (383)
T ss_pred EEeCCCCCCccccHHHH---HHHHHHHHHHHhCCCeEEEE--ecCH
Confidence 3889999995 999993 33444444444446555544 7775
No 156
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=43.52 E-value=20 Score=37.55 Aligned_cols=41 Identities=15% Similarity=0.147 Sum_probs=26.5
Q ss_pred EecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 133 DFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 133 E~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
=|++--|||.+|+||.-+++- . ..++.+..||++ .+.|-||
T Consensus 5 vlSGiqPTG~lHLGNylGaik-~-~v~lq~q~~~~~--~~~IADl 45 (431)
T PRK12284 5 VLTGITTTGTPHLGNYAGAIR-P-AIAASRQPGVES--FYFLADY 45 (431)
T ss_pred EEEEecCCCcchHHHHHHHHH-H-HHHHHHhCCCcE--EEEeech
Confidence 478899999999999544421 1 234444568875 4456665
No 157
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=43.30 E-value=83 Score=31.50 Aligned_cols=56 Identities=16% Similarity=0.008 Sum_probs=41.3
Q ss_pred CeEEEecCCcccccc----ccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCC
Q 014355 309 PLIIVKSDGGFNYAS----TDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGW 365 (426)
Q Consensus 309 d~Vl~ksDG~~tY~t----~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~ 365 (426)
++.+.|.|-|...+. |=+.|.+..-...|+|.+|- .|+-|+.|..+.-++++.+|+
T Consensus 31 eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~dTlvT-~GgiQSNh~r~tAavA~~lGl 90 (323)
T COG2515 31 EIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGADTLVT-YGGIQSNHVRQTAAVAAKLGL 90 (323)
T ss_pred EEEEEcccccccccCccHHHHHHHHHhhhhhcCCcEEEE-ecccchhHHHHHHHHHHhcCC
Confidence 345677777776664 44666553323569999994 678899999999889999998
No 158
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=42.97 E-value=3.9e+02 Score=27.49 Aligned_cols=126 Identities=17% Similarity=0.109 Sum_probs=73.0
Q ss_pred HHHHHHHHHhCCCCCceeeeEEecCcEEEEeeCHHHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCcCCCccchhHH
Q 014355 70 QPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLR 149 (426)
Q Consensus 70 ~~iA~~l~~~l~~~~~i~~v~vagpGfiNf~l~~~~~~~~l~~~l~~~~~~~~~~~~~~kV~VE~~SpNp~~plHiGHlR 149 (426)
-.++++|+.+-.. + + +.+++-| -......+.+.++-+............++|+|--+|-.| -.-+.+
T Consensus 171 T~L~~~Iak~~~~-d-v--vVyv~iG-----ERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p----~~~R~~ 237 (369)
T cd01134 171 TVIQQSLSKYSNS-D-I--VIYVGCG-----ERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMP----VAAREA 237 (369)
T ss_pred HHHHHHHHhCCCC-C-E--EEEEEeC-----CChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCC----HHHHHH
Confidence 4666777765322 1 1 2223322 444555555555432221111111346789898888777 556888
Q ss_pred HHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHH------hhCCCCCccccccHHHHHHHHHHhh
Q 014355 150 STIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLF------EKFPNSEDANETAIGELQEFYRRSK 214 (426)
Q Consensus 150 saiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~------~~~~~~~~~~~~~i~~l~~~y~~~~ 214 (426)
+...|=++|..++..|++|.-. .+|.= ..+..++ .+.|....++..--..|.++|.++.
T Consensus 238 s~yta~tiAEYfrd~G~dVll~--~Ds~t----R~A~A~REIs~~l~E~P~~~GYP~yl~s~La~~yERAG 302 (369)
T cd01134 238 SIYTGITIAEYFRDMGYNVALM--ADSTS----RWAEALREISGRLEEMPGEEGYPAYLGARLASFYERAG 302 (369)
T ss_pred HHHHHHHHHHHHHHcCCCEEEE--EcChh----HHHHHHHHHHHhcCCCCCccCcCccHHHHHHHHHHhcc
Confidence 8999999999999999999987 45532 2222222 2334444455544456777887765
No 159
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=42.73 E-value=17 Score=36.78 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=26.5
Q ss_pred ecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhH
Q 014355 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQ 180 (426)
Q Consensus 134 ~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q 180 (426)
|++--|||++|+||.=.++ --+.++-+. ++| ...|.||=.+
T Consensus 5 ~~G~~PTG~lHLG~~~g~~--~~~~~lQ~~--~~~--~~~IaD~ha~ 45 (333)
T PRK00927 5 LSGIQPTGKLHLGNYLGAI--KNWVELQDE--YEC--FFCIADLHAL 45 (333)
T ss_pred EEeeCCCccchHHhHHHHH--HHHHHHHhc--CCe--EEEEecHHHH
Confidence 6778899999999976553 233344332 554 4567887433
No 160
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=40.36 E-value=21 Score=36.15 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=24.9
Q ss_pred EecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 133 DFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 133 E~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
=|++--|||.+|+||.-+++- -..++.+..| +...+.|-||
T Consensus 6 v~sGiqPTG~~HLGnylga~k--~~~~lq~~~~--~~~~~~IADl 46 (332)
T PRK12556 6 MLTGIKPTGYPHLGNYIGAIK--PALQMAKNYE--GKALYFIADY 46 (332)
T ss_pred EEEEECCCCcchHHHHHHHHH--HHHHHHHhcC--CeEEEEEech
Confidence 388999999999999544422 1123334444 4444556665
No 161
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=39.08 E-value=22 Score=25.74 Aligned_cols=21 Identities=19% Similarity=0.157 Sum_probs=16.8
Q ss_pred HHHH--HHHHHHCCCeeEEeccc
Q 014355 154 GDSL--ARMLEFSNVEVLRRNHV 174 (426)
Q Consensus 154 GD~L--arll~~~G~~V~~~~yv 174 (426)
|.+. -|+|+.+||+|+.+.|-
T Consensus 18 g~t~lk~r~L~~~G~~Vi~Ip~~ 40 (58)
T PF08373_consen 18 GSTKLKHRHLKALGYKVISIPYY 40 (58)
T ss_pred hHHHHHHHHHHHCCCEEEEecHH
Confidence 4444 57999999999999874
No 162
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=38.12 E-value=45 Score=27.27 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHHCCCEEEeCCeEEEEecCCCCCeEEEecCCcc
Q 014355 277 PYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGF 319 (426)
Q Consensus 277 ~~v~~vi~~L~~~g~~~~~dGa~~~~~~g~~~d~Vl~ksDG~~ 319 (426)
+.|.+++++|.+.|++.+.+|..+=+..-.-++.--++.++++
T Consensus 36 ~~v~~~l~~Le~~GLler~~g~~iK~~~~k~K~~~e~~~hHtY 78 (92)
T PF10007_consen 36 EEVREALEKLEEMGLLERVEGKTIKRSEAKFKPKKEVHKHHTY 78 (92)
T ss_pred HHHHHHHHHHHHCCCeEEecCcccchhhhhcccchhhhcCCce
Confidence 4578999999999999999988653332222223345556664
No 163
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=36.00 E-value=20 Score=29.41 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=11.0
Q ss_pred CCCcCCCccchhHHH
Q 014355 136 SPNIAKEMHVGHLRS 150 (426)
Q Consensus 136 SpNp~~plHiGHlRs 150 (426)
..++ +|+|.||..-
T Consensus 5 ~G~F-dp~H~GH~~l 18 (105)
T cd02156 5 PGEP-GYLHIGHAKL 18 (105)
T ss_pred CCCC-CCCCHHHHHH
Confidence 4566 8999999874
No 164
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=35.36 E-value=1.4e+02 Score=29.37 Aligned_cols=67 Identities=19% Similarity=0.267 Sum_probs=38.4
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcccc-ccCCCceeHHHHHHHHHH
Q 014355 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLR-TRFSEVVRLVDLLDEAKN 411 (426)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmS-kR~G~~v~L~dLlde~~~ 411 (426)
.+.|.++-.-|+=| .||..+.++ -+++- +++...+.| ++--|.-- .|.| |+-.++|++.|+++....
T Consensus 196 ~~~D~LVIFAGACQ-S~yEall~A--GANFA---SSP~RVlIH-alDPV~i~--eKia~T~i~~~V~i~dvi~nTIT 263 (283)
T TIGR02855 196 PSLDQLVIFAGACQ-SHFESLIRA--GANFA---SSPSRVNIH-ALDPVYIV--EKISFTPFMERVNIWEVLRNTIT 263 (283)
T ss_pred CCcccEEEEcchhH-HHHHHHHHc--Ccccc---CCccceEEe-ccCcceeE--EeeeeccccceecHHHHHhhccc
Confidence 46788885666655 677754333 12342 233345666 34333221 1343 788889999999976543
No 165
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=30.60 E-value=26 Score=35.46 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=26.6
Q ss_pred EecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchh
Q 014355 133 DFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGT 179 (426)
Q Consensus 133 E~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~ 179 (426)
=|++--|+|++|+||.-.++. -.+-|+..|. | ...|.||=.
T Consensus 5 v~sG~~PTG~~HLGn~l~~~~---~~~~lQ~~~~-~--~i~IaD~ha 45 (333)
T PRK12282 5 ILTGDRPTGKLHLGHYVGSLK---NRVALQNEHE-Q--FVLIADQQA 45 (333)
T ss_pred EEEeeCCCCcchHHHHHHHHH---HHHHHHhCCC-E--EEEEccchh
Confidence 367888999999999655322 1224555664 4 466788743
No 166
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=29.00 E-value=82 Score=27.77 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=31.0
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEec
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRN 172 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~ 172 (426)
+.++|-|==.|+||.+|-|. ++..|...||+|+-+|
T Consensus 15 ~~K~IAvVG~S~~P~r~sy~-----------V~kyL~~~GY~ViPVN 50 (140)
T COG1832 15 SAKTIAVVGASDKPDRPSYR-----------VAKYLQQKGYRVIPVN 50 (140)
T ss_pred hCceEEEEecCCCCCccHHH-----------HHHHHHHCCCEEEeeC
Confidence 35688888999999999764 6788999999999988
No 167
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=28.53 E-value=42 Score=30.41 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=18.5
Q ss_pred HHHHHHHHCCCeeEEecccCCc
Q 014355 156 SLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 156 ~Larll~~~G~~V~~~~yv~D~ 177 (426)
-|||.||.+||++...+-..|+
T Consensus 17 ~LARwLRllGydt~~~~~~~d~ 38 (165)
T COG1656 17 KLARWLRLLGYDTVYSSNESDD 38 (165)
T ss_pred HHHHHHHHcCCceeeeccCCcH
Confidence 4899999999999999755554
No 168
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=28.52 E-value=46 Score=29.36 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=17.6
Q ss_pred HHHHHHHHCCCeeEEecccCC
Q 014355 156 SLARMLEFSNVEVLRRNHVGD 176 (426)
Q Consensus 156 ~Larll~~~G~~V~~~~yv~D 176 (426)
-||+.||.+||||.....+.|
T Consensus 11 ~Lar~LR~lG~Dt~~~~~~~D 31 (147)
T PF01927_consen 11 RLARWLRLLGYDTLYSRDIDD 31 (147)
T ss_pred HHHHHHHHCCCcEEEeCCCCh
Confidence 489999999999997776655
No 169
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.38 E-value=40 Score=33.88 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=26.3
Q ss_pred ecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 134 ~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
+|+--|+|.||+||- +|-.-.++....+| +..-+.|-|+
T Consensus 9 lSG~~PSG~lHLGny----~ga~~~~v~~q~~~-~~~f~~IaDl 47 (314)
T COG0180 9 LSGIQPSGKLHLGNY----LGAIRNWVLLQEEY-YECFFFIADL 47 (314)
T ss_pred EecCCCCCCcchhHh----HHHHHHHHHHhccc-CceEEEEecH
Confidence 688999999999996 44445555555564 4444556663
No 170
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=26.34 E-value=93 Score=29.22 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=28.8
Q ss_pred CcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccC
Q 014355 138 NIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVG 175 (426)
Q Consensus 138 Np~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~ 175 (426)
++-+|++=||.-| -+=..+++.|..+|+-+.|-||=+
T Consensus 34 ~HPHPl~gGtm~n-kvv~~la~~l~~~G~atlRfNfRg 70 (210)
T COG2945 34 CHPHPLFGGTMNN-KVVQTLARALVKRGFATLRFNFRG 70 (210)
T ss_pred cCCCccccCccCC-HHHHHHHHHHHhCCceEEeecccc
Confidence 3445688888444 455689999999999999999844
No 171
>PF09456 RcsC: RcsC Alpha-Beta-Loop (ABL); InterPro: IPR019017 This domain is found in the C terminus of the signal transduction response regulator (phospho-relay) kinase RcsC, between the ATP-binding region (IPR003594 from INTERPRO) and the receiver region (IPR001789 from INTERPRO). This domain forms a discrete alpha/beta/loop structure []. The Rcs signalling pathway controls a variety of physiological functions like capsule synthesis, cell division or motility in prokaryotes. The Rcs regulation cascade, involving a multi-step phosphorelay between the two membrane-bound hybrid sensor kinases RcsC and RcsD and the global regulator RcsB, is, up to now, one of the most complicated regulatory systems in bacteria []. ; GO: 0004673 protein histidine kinase activity, 0004871 signal transducer activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent, 0018106 peptidyl-histidine phosphorylation, 0005886 plasma membrane, 0016021 integral to membrane; PDB: 2AYY_A 2AYX_A.
Probab=25.73 E-value=47 Score=27.18 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHCCCeeEEec
Q 014355 148 LRSTIIGDSLARMLEFSNVEVLRRN 172 (426)
Q Consensus 148 lRsaiiGD~Larll~~~G~~V~~~~ 172 (426)
.||+.+-..|-++|+..|.+|.+-.
T Consensus 6 irNa~Le~yL~~lL~~~G~~v~~y~ 30 (92)
T PF09456_consen 6 IRNAYLESYLQRLLSYHGFQVQRYE 30 (92)
T ss_dssp ---HHHHHHHHHHHCTTTEEEEE-S
T ss_pred ehhHHHHHHHHHHHHHCCcEEEEec
Confidence 6999999999999999999998866
No 172
>PRK05320 rhodanese superfamily protein; Provisional
Probab=25.59 E-value=1.7e+02 Score=28.32 Aligned_cols=79 Identities=13% Similarity=0.133 Sum_probs=54.1
Q ss_pred CChHHHHHHHHHhCCCCCceeeeEEecCcEEEEeeC-HHHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCcCCCccc
Q 014355 67 KGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLS-KNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHV 145 (426)
Q Consensus 67 ~~P~~iA~~l~~~l~~~~~i~~v~vagpGfiNf~l~-~~~~~~~l~~~l~~~~~~~~~~~~~~kV~VE~~SpNp~~plHi 145 (426)
.+|.++.+.+.+.......-.+|-+|.-| ||-+++ +..-.+.+...+..+.. . .+-..-++.+.+.|-..|+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~G~i~ia~eG-iN~t~~g~~~~id~~~~~l~~~~~-~----~dl~~k~~~~~~~pF~~l~v 88 (257)
T PRK05320 15 DDPETLRPLVLARCEALGLKGTILLAPEG-INLFLAGTREAIDAFYAWLRADAR-F----ADLQVKESLSDSQPFRRMLV 88 (257)
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEEcCCC-ceEEEEeeHHHHHHHHHHHhhCCC-c----cCceeecccccCCCchhccc
Confidence 68999999888877666677889999999 899998 44444445555544322 2 22234468888999888887
Q ss_pred hhHHHH
Q 014355 146 GHLRST 151 (426)
Q Consensus 146 GHlRsa 151 (426)
-.-...
T Consensus 89 k~k~ei 94 (257)
T PRK05320 89 KLKREI 94 (257)
T ss_pred hhhhHH
Confidence 664443
No 173
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=25.42 E-value=64 Score=25.19 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHCCCeeEEec
Q 014355 153 IGDSLARMLEFSNVEVLRRN 172 (426)
Q Consensus 153 iGD~Larll~~~G~~V~~~~ 172 (426)
=|+.++++++..|++++|-.
T Consensus 21 DGe~ia~~~~~~G~~~iRGS 40 (74)
T PF04028_consen 21 DGELIARVLERFGFRTIRGS 40 (74)
T ss_pred CHHHHHHHHHHcCCCeEEeC
Confidence 48999999999999999987
No 174
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.23 E-value=37 Score=33.60 Aligned_cols=90 Identities=16% Similarity=0.102 Sum_probs=0.0
Q ss_pred CccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEc---------C
Q 014355 317 GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG---------E 387 (426)
Q Consensus 317 G~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~---------~ 387 (426)
|-.||..---| .+-.|+.+++= +|.||..|.+-...+++.++- .....+.-++-.++.. .
T Consensus 139 GLftYPvLqAA----DILLYksThVP--VGeDQsQHleL~r~lA~~fN~-----~Y~~~~fpvP~~il~~~~~rV~SL~d 207 (347)
T KOG2713|consen 139 GLFTYPVLQAA----DILLYKSTHVP--VGEDQSQHLELARHLAQAFNK-----TYGTEIFPVPEQILRQSHARVMSLRD 207 (347)
T ss_pred eeecchhHhhh----hHhhhcccccc--CCccHHHHHHHHHHHHHHHhh-----hccCeeecCcHHHHhhhhhhhhhccC
Q ss_pred CCccccccCCC---ceeHHHHHHHHHHHHHHHH
Q 014355 388 DGKRLRTRFSE---VVRLVDLLDEAKNRSKAVL 417 (426)
Q Consensus 388 ~g~kmSkR~G~---~v~L~dLlde~~~~a~~~i 417 (426)
..+||||+.+| .|.|-|=-+++.+..++..
T Consensus 208 pekKMSKSd~n~~s~I~l~DS~~~I~~Ki~ka~ 240 (347)
T KOG2713|consen 208 PEKKMSKSDPNPKSRINLTDSPDLIVKKIKKAQ 240 (347)
T ss_pred hhhhcccCCCCCcceEEecCCHHHHHHHHHHHh
No 175
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=24.67 E-value=3e+02 Score=27.69 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHH
Q 014355 152 IIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIE 186 (426)
Q Consensus 152 iiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~ 186 (426)
.+||++.++=+.+|.+-..=.-++|+|.-|..++.
T Consensus 87 ~Lg~~mik~gkeLg~dSs~g~tl~~~Gesm~~i~e 121 (366)
T KOG1118|consen 87 LLGDVMIKHGKELGDDSSFGHTLIDAGESMREIGE 121 (366)
T ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHH
Confidence 38999999999999998888888888888777763
No 176
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.36 E-value=1.8e+02 Score=30.29 Aligned_cols=57 Identities=14% Similarity=-0.004 Sum_probs=36.7
Q ss_pred eEEEEeeCCccccHHHHHHHH-HHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHH
Q 014355 340 WIIYVTDVGQQLHFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 403 (426)
Q Consensus 340 ~~i~V~g~~q~~hf~~~~~~~-~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~ 403 (426)
.-+-+-|+||-++...=.... +.++.. ....=+.|-++...+|.|+-|+.||.|+|+
T Consensus 228 ~~~QlGGsDQwGNitaG~dlI~ki~~~~-------~~vfGlT~PLlTsstG~KlGKSaGnAvWLd 285 (467)
T KOG2623|consen 228 CRFQLGGSDQWGNITAGTDLIRKIMPIQ-------AFVFGLTFPLLTSSTGAKLGKSAGNAVWLD 285 (467)
T ss_pred eeEEecccccccccchHHHHHHHhcccc-------cceeeeeeeeEecCcchhhccCCCceEEec
Confidence 556678999988876432222 223221 111223445688889999999999999886
No 177
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=22.23 E-value=1e+03 Score=26.18 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=55.2
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHH---hhCCCCCcccccc
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLF---EKFPNSEDANETA 202 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~---~~~~~~~~~~~~~ 202 (426)
-.++|+|--+|--| -.-..++...|=++|..+|-.||+|.-.. ++. +..+...+-+- .+.|....++..-
T Consensus 288 m~RTvlVanTSn~P----v~aR~~s~ytgiTiAEYfRd~G~~Vllm~--DSt-SR~AeAlREIS~~l~E~P~~eGYP~yL 360 (586)
T PRK04192 288 MERTVLIANTSNMP----VAAREASIYTGITIAEYYRDMGYDVLLMA--DST-SRWAEALREISGRLEEMPGEEGYPAYL 360 (586)
T ss_pred ceeEEEEEECCCCC----HHHHHHHHHHHHHHHHHHHHCCCCEEEEe--cCh-HHHHHHHHHHHHhcCCCCccCCcCccH
Confidence 46789998888777 55677888889999999999999999843 332 22222221111 2334444566655
Q ss_pred HHHHHHHHHHhhc
Q 014355 203 IGELQEFYRRSKN 215 (426)
Q Consensus 203 i~~l~~~y~~~~~ 215 (426)
-..|.++|.+++.
T Consensus 361 ~S~La~~yERAG~ 373 (586)
T PRK04192 361 ASRLAEFYERAGR 373 (586)
T ss_pred HHHHHHHHHhhcc
Confidence 5668889988753
No 178
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=22.06 E-value=41 Score=24.64 Aligned_cols=11 Identities=36% Similarity=0.676 Sum_probs=8.1
Q ss_pred CCccchhHHHH
Q 014355 141 KEMHVGHLRST 151 (426)
Q Consensus 141 ~plHiGHlRsa 151 (426)
.|+|.||.+-.
T Consensus 9 dp~H~GH~~~l 19 (66)
T TIGR00125 9 DPFHLGHLDLL 19 (66)
T ss_pred CCCCHHHHHHH
Confidence 35899998643
No 179
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=21.29 E-value=1.6e+02 Score=26.71 Aligned_cols=39 Identities=26% Similarity=0.169 Sum_probs=31.1
Q ss_pred ceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCC-CeeEEec
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSN-VEVLRRN 172 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G-~~V~~~~ 172 (426)
+||+|=++||+|.+ ..|..+.+.+..-++..| ++|+..+
T Consensus 1 mkiLvI~asp~~~~------S~s~~l~~~~~~~~~~~~~~~v~~~d 40 (199)
T PF02525_consen 1 MKILVINASPRPEG------SFSRALADAFLEGLQEAGPHEVEIRD 40 (199)
T ss_dssp EEEEEEE--SSTTT------SHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEEEEEcCCCCcc------CHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 47899999999865 356779999999999999 8888776
No 180
>PF07747 MTH865: MTH865-like family; InterPro: IPR024093 This entry represents a group of uncharacterised hypothetical proteins from archaea, including the 8.4 kDa protein MTH865 from Methanobacterium thermoautotrophicum. The NMR structure of MTH865 reveals an EF-Hand-like fold consisting of four helices in two hairpins [].; PDB: 1IIO_A.
Probab=21.16 E-value=49 Score=26.04 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=24.2
Q ss_pred CCccccchhhHHHHHhhcCCCCCCCChHHHHHHHHHh
Q 014355 43 KFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKN 79 (426)
Q Consensus 43 ~~GD~~t~~a~~lak~~k~~~~~~~~P~~iA~~l~~~ 79 (426)
+.||++.. |+.|.|.++...-..+++.++|..|+++
T Consensus 37 ~~g~~~~t-a~El~kll~~~DFP~k~a~~lad~i~~r 72 (75)
T PF07747_consen 37 EAGDVEMT-AGELGKLLTDSDFPYKSAEDLADDIVER 72 (75)
T ss_dssp -BTTB----TTTTGGGS-GGGSB-SHHHHHHHHHHHH
T ss_pred ccCCEeee-HHHHHhhCCccCCCCCCHHHHHHHHHHh
Confidence 68898875 7999988875555568899999988864
No 181
>PF12025 Phage_C: Phage protein C; InterPro: IPR016407 This family of phage proteins is functionally uncharacterised. Proteins in this family are typically between 68 to 86 amino acids in length.; GO: 0019073 viral DNA genome packaging
Probab=20.93 E-value=31 Score=25.90 Aligned_cols=34 Identities=21% Similarity=0.159 Sum_probs=21.6
Q ss_pred HHHHcCCce-eee-ccccccCcHHHHHHHHHHCCCE
Q 014355 259 VYKRLRVDL-EEK-GESFYNPYIPGVIDELSKQGLV 292 (426)
Q Consensus 259 ~~~~Lgi~f-d~~-~Es~~~~~v~~vi~~L~~~g~~ 292 (426)
++..||--. ||+ .|+.+...-+++++.|+++|++
T Consensus 33 wLNm~G~llkdWFryE~hfvhg~~sllDiLkeRglL 68 (68)
T PF12025_consen 33 WLNMLGALLKDWFRYEDHFVHGKKSLLDILKERGLL 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccCC
Confidence 444444444 454 2665555568899999999863
No 182
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=20.48 E-value=3.7e+02 Score=26.74 Aligned_cols=86 Identities=16% Similarity=0.294 Sum_probs=53.6
Q ss_pred HHHHHHHhhcCCCeEEEEeeCCccccHHHH-HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCc-cc---c--------
Q 014355 327 AALWYRLNEEKAEWIIYVTDVGQQLHFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RL---R-------- 393 (426)
Q Consensus 327 A~~~~r~~~~~~d~~i~V~g~~q~~hf~~~-~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~-km---S-------- 393 (426)
-|..||+..+...++| |++-.+--.|+ +-+.+.||..| .-.| |.|.++-|. .. |
T Consensus 144 TYv~wKLSgfP~nRVi---GsGcnLDsaRFryLi~~~Lg~~p-------ss~h---gwIiGEHGdSsV~vWSgvniAGv~ 210 (332)
T KOG1495|consen 144 TYVTWKLSGFPKNRVI---GSGCNLDSARFRYLIGNRLGVHP-------SSCH---GWIIGEHGDSSVPVWSGVNIAGVS 210 (332)
T ss_pred HHHHHHHcCCccccee---ccCcCccHHHHHHHHHHHhCCCc-------ccce---EEEeeccCCccceecccccccceE
Confidence 4667998777777775 77766666666 35668888743 2233 345544432 01 1
Q ss_pred --------ccCCCceeHHHHHHHHHHHHHHHHHHhccccc
Q 014355 394 --------TRFSEVVRLVDLLDEAKNRSKAVLIERGIYIW 425 (426)
Q Consensus 394 --------kR~G~~v~L~dLlde~~~~a~~~i~~~~~~~~ 425 (426)
.-.-.-..+.|+-.++.+-|.++++-||-.=|
T Consensus 211 l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklKGyTsw 250 (332)
T KOG1495|consen 211 LKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLKGYTSW 250 (332)
T ss_pred HhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence 01111235667788899999999999997655
Done!