Query 014355
Match_columns 426
No_of_seqs 193 out of 1921
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 10:04:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f7u_A Arginyl-tRNA synthetase 100.0 3.3E-85 1.1E-89 698.6 33.4 390 10-419 30-435 (607)
2 2zue_A Arginyl-tRNA synthetase 100.0 2.2E-82 7.4E-87 680.8 31.1 394 10-422 4-457 (629)
3 1iq0_A Arginyl-tRNA synthetase 100.0 2.5E-76 8.5E-81 631.2 34.6 380 11-422 2-425 (592)
4 3fnr_A Arginyl-tRNA synthetase 100.0 2.4E-67 8.3E-72 544.7 31.7 292 99-416 1-310 (464)
5 3tqo_A Cysteinyl-tRNA syntheta 100.0 8.1E-31 2.8E-35 270.5 17.8 234 126-417 22-295 (462)
6 1li5_A Cysrs, cysteinyl-tRNA s 100.0 3.9E-30 1.3E-34 266.9 21.7 228 126-416 19-291 (461)
7 3sp1_A Cysteinyl-tRNA syntheta 100.0 5.6E-28 1.9E-32 250.6 15.0 238 129-416 42-325 (501)
8 3c8z_A Cysteinyl-tRNA syntheta 99.9 1.2E-26 4.2E-31 237.8 22.7 228 127-416 37-317 (414)
9 4dlp_A Aminoacyl-tRNA syntheta 99.9 6.4E-27 2.2E-31 247.4 17.9 228 126-416 23-346 (536)
10 2d5b_A Methionyl-tRNA syntheta 99.9 1.2E-25 4E-30 235.7 16.5 227 127-416 2-322 (500)
11 3kfl_A Methionyl-tRNA syntheta 99.9 7.6E-26 2.6E-30 240.4 14.5 229 125-416 23-364 (564)
12 2csx_A Methionyl-tRNA syntheta 99.9 4.3E-24 1.5E-28 223.7 17.7 227 127-417 4-321 (497)
13 3al0_C Glutamyl-tRNA(Gln) amid 99.9 5.4E-24 1.8E-28 225.8 15.4 218 102-408 104-375 (592)
14 3h99_A Methionyl-tRNA syntheta 99.9 1.9E-23 6.5E-28 221.9 19.3 231 125-416 15-370 (560)
15 2o5r_A Glutamyl-tRNA synthetas 99.9 2.5E-23 8.7E-28 216.2 18.9 236 127-408 10-278 (481)
16 2x1l_A Methionyl-tRNA syntheta 99.9 5.9E-23 2E-27 216.4 20.2 229 125-417 9-336 (524)
17 1nzj_A Hypothetical protein YA 99.9 3.6E-22 1.2E-26 195.6 10.6 186 135-406 10-242 (298)
18 1irx_A Lysyl-tRNA synthetase; 99.9 2.2E-23 7.5E-28 219.7 1.6 229 136-416 27-304 (523)
19 3gdz_A Arginyl-tRNA synthetase 99.9 1.8E-21 6.3E-26 163.2 12.2 104 6-117 2-106 (109)
20 3afh_A Glutamyl-tRNA synthetas 99.8 2E-20 6.8E-25 194.4 16.8 194 128-408 24-271 (488)
21 1rqg_A Methionyl-tRNA syntheta 99.8 3.8E-19 1.3E-23 193.7 16.0 122 128-302 2-127 (722)
22 3u1f_A Methionyl-tRNA syntheta 99.8 1.8E-17 6.2E-22 175.1 18.8 124 125-301 6-132 (542)
23 4g6z_A Glutamate-tRNA ligase; 99.7 3.5E-17 1.2E-21 169.4 19.1 195 127-408 23-280 (490)
24 2cfo_A Glutamyl-tRNA synthetas 99.7 5E-17 1.7E-21 169.1 15.9 187 136-408 7-263 (492)
25 1j09_A Glutamyl-tRNA synthetas 99.7 9.8E-17 3.4E-21 166.0 14.3 86 308-408 174-259 (468)
26 2ja2_A Glutamyl-tRNA synthetas 99.7 4.6E-16 1.6E-20 161.7 16.3 86 308-408 183-273 (498)
27 1gax_A Valrs, valyl-tRNA synth 99.7 1.8E-15 6.3E-20 167.2 20.8 134 126-296 32-170 (862)
28 1wkb_A Leucyl-tRNA synthetase; 99.6 1.2E-15 4.1E-20 168.5 12.7 146 127-301 33-185 (810)
29 4gri_A Glutamate--tRNA ligase; 99.6 6.6E-15 2.3E-19 154.3 16.3 86 308-408 204-289 (512)
30 3aii_A Glutamyl-tRNA synthetas 99.5 1.7E-14 5.9E-19 150.7 9.8 194 128-408 95-361 (553)
31 1qtq_A GLNRS, protein (glutami 99.5 1.8E-13 6.1E-18 143.0 12.5 211 104-408 9-299 (553)
32 4arc_A Leucine--tRNA ligase; l 99.5 2.9E-13 1E-17 149.5 14.7 148 101-301 25-178 (880)
33 2v0c_A Aminoacyl-tRNA syntheta 99.4 6E-13 2E-17 147.6 13.0 121 128-301 33-158 (878)
34 2hz7_A Glutaminyl-tRNA synthet 99.4 7E-13 2.4E-17 144.2 12.1 212 103-408 48-339 (851)
35 1ile_A Ilers, isoleucyl-tRNA s 99.4 9.6E-13 3.3E-17 145.4 10.2 140 126-301 36-180 (821)
36 1ffy_A Isoleucyl-tRNA syntheta 99.2 2.8E-11 9.6E-16 134.8 11.4 134 127-301 47-185 (917)
37 1wz2_A Leucyl-tRNA synthetase; 99.1 2E-10 6.8E-15 128.9 12.6 140 128-296 34-180 (967)
38 2cyb_A Tyrosyl-tRNA synthetase 98.3 3.6E-06 1.2E-10 83.0 11.3 70 335-414 168-237 (323)
39 2dlc_X Tyrosyl-tRNA synthetase 97.9 2.7E-05 9.4E-10 78.8 9.2 70 335-414 180-251 (394)
40 1n3l_A Tyrosyl-tRNA synthetase 97.9 7E-06 2.4E-10 82.5 4.5 67 335-411 176-243 (372)
41 1ffy_A Isoleucyl-tRNA syntheta 97.6 5.2E-05 1.8E-09 84.5 6.0 69 342-417 551-621 (917)
42 1ile_A Ilers, isoleucyl-tRNA s 97.4 6.6E-05 2.3E-09 82.9 4.3 68 342-416 547-616 (821)
43 2zp1_A Tyrosyl-tRNA synthetase 97.3 0.0014 4.9E-08 64.1 11.6 67 335-415 161-228 (314)
44 2g36_A Tryptophanyl-tRNA synth 97.2 0.00028 9.6E-09 69.9 5.8 65 335-404 151-218 (340)
45 4arc_A Leucine--tRNA ligase; l 97.0 0.00036 1.2E-08 77.3 4.4 73 342-417 546-665 (880)
46 2v0c_A Aminoacyl-tRNA syntheta 97.0 0.00042 1.4E-08 76.9 4.3 76 337-417 531-663 (878)
47 3p0j_A Tyrosyl-tRNA synthetase 96.8 0.0027 9.2E-08 68.5 8.8 86 317-415 167-255 (690)
48 1wkb_A Leucyl-tRNA synthetase; 96.7 0.0013 4.4E-08 72.5 5.7 70 337-417 603-676 (810)
49 1wz2_A Leucyl-tRNA synthetase; 96.4 0.0027 9.3E-08 71.2 5.7 72 336-417 602-676 (967)
50 2pid_A Tyrosyl-tRNA synthetase 95.2 0.0039 1.3E-07 62.0 0.7 59 336-404 209-267 (356)
51 2yxn_A Tyrosyl-tRNA synthetase 94.9 0.0046 1.6E-07 60.7 -0.1 59 336-404 190-248 (322)
52 2jan_A Tyrosyl-tRNA synthetase 94.6 0.0092 3.1E-07 60.8 1.5 60 335-404 185-245 (432)
53 1jil_A Tyrrs, tyrosyl-tRNA syn 94.4 0.011 3.9E-07 60.0 1.5 59 336-404 185-244 (420)
54 2ts1_A Tyrosyl-tRNA synthetase 94.3 0.01 3.5E-07 60.2 1.0 59 336-404 184-243 (419)
55 1h3f_A Tyrosyl-tRNA synthetase 94.3 0.028 9.6E-07 57.3 4.1 59 336-404 186-245 (432)
56 2ip1_A Tryptophanyl-tRNA synth 93.0 0.046 1.6E-06 55.7 3.1 63 344-414 254-319 (432)
57 2el7_A Tryptophanyl-tRNA synth 92.5 0.051 1.7E-06 53.6 2.5 67 335-409 139-213 (337)
58 2cya_A Tyrosyl-tRNA synthetase 92.5 0.051 1.7E-06 54.1 2.5 69 335-413 175-261 (364)
59 1y42_X Tyrosyl-tRNA synthetase 92.1 0.024 8.2E-07 57.1 -0.5 65 336-404 231-306 (392)
60 2j5b_A Tyrosyl-tRNA synthetase 92.0 0.087 3E-06 52.1 3.6 69 337-415 186-257 (348)
61 3hv0_A Tryptophanyl-tRNA synth 91.8 0.055 1.9E-06 54.4 1.9 66 342-415 223-291 (393)
62 1r6u_A Tryptophanyl-tRNA synth 91.8 0.064 2.2E-06 54.6 2.4 64 344-415 261-327 (437)
63 1r6t_A Tryptophanyl-tRNA synth 91.8 0.066 2.2E-06 55.2 2.4 64 344-415 308-374 (477)
64 3tzl_A Tryptophanyl-tRNA synth 91.6 0.037 1.3E-06 54.2 0.4 67 335-404 137-205 (322)
65 3vgj_A Tyrosyl-tRNA synthetase 91.6 0.11 3.9E-06 51.8 3.8 72 335-415 198-272 (373)
66 3hzr_A Tryptophanyl-tRNA synth 91.4 0.11 3.7E-06 52.2 3.5 64 344-415 229-294 (386)
67 3tze_A Tryptophanyl-tRNA synth 91.2 0.14 4.9E-06 51.6 4.2 67 341-415 245-314 (406)
68 3jxe_A Tryptophanyl-tRNA synth 90.7 0.076 2.6E-06 53.4 1.6 64 344-415 212-278 (392)
69 3i05_A Tryptophanyl-tRNA synth 90.7 0.087 3E-06 53.0 2.0 66 342-415 227-294 (395)
70 1i6k_A TRPRS, tryptophanyl-tRN 90.7 0.075 2.6E-06 52.2 1.5 78 335-415 135-219 (328)
71 1yi8_B Tryptophanyl-tRNA synth 90.6 0.086 3E-06 52.2 1.8 74 335-412 160-236 (351)
72 2yy5_A Tryptophanyl-tRNA synth 90.4 0.068 2.3E-06 52.9 1.0 77 335-414 145-228 (348)
73 3foc_A Tryptophanyl-tRNA synth 88.0 0.22 7.5E-06 50.9 2.6 64 344-415 292-358 (451)
74 2el7_A Tryptophanyl-tRNA synth 85.8 0.24 8.4E-06 48.6 1.5 39 134-177 5-44 (337)
75 3a04_A Tryptophanyl-tRNA synth 85.3 0.71 2.4E-05 46.0 4.6 69 340-412 209-278 (372)
76 2cyc_A Tyrosyl-tRNA synthetase 85.2 0.42 1.4E-05 47.7 2.9 75 335-413 178-274 (375)
77 1i6k_A TRPRS, tryptophanyl-tRN 77.4 0.75 2.6E-05 44.9 1.5 38 134-177 5-42 (328)
78 3prh_A Tryptophanyl-tRNA synth 75.3 0.7 2.4E-05 46.3 0.6 75 335-415 169-253 (388)
79 1yi8_B Tryptophanyl-tRNA synth 71.9 1.1 3.7E-05 44.3 1.0 38 133-178 25-64 (351)
80 3n9i_A Tryptophanyl-tRNA synth 71.7 0.89 3E-05 44.8 0.3 73 335-414 150-233 (346)
81 3sz3_A Tryptophanyl-tRNA synth 70.9 0.67 2.3E-05 45.6 -0.8 78 335-414 141-227 (341)
82 2cya_A Tyrosyl-tRNA synthetase 70.4 2.2 7.4E-05 42.3 2.8 38 134-177 39-76 (364)
83 3tzl_A Tryptophanyl-tRNA synth 68.4 1.3 4.4E-05 43.2 0.6 38 134-177 7-44 (322)
84 2ts1_A Tyrosyl-tRNA synthetase 67.3 3.7 0.00013 41.4 3.8 39 133-177 33-72 (419)
85 2yxn_A Tyrosyl-tRNA synthetase 67.2 3.4 0.00012 40.1 3.5 38 134-177 37-75 (322)
86 3a04_A Tryptophanyl-tRNA synth 66.0 3 0.0001 41.4 2.8 38 134-177 74-111 (372)
87 3vgj_A Tyrosyl-tRNA synthetase 65.6 4 0.00014 40.5 3.6 40 133-177 59-98 (373)
88 1y42_X Tyrosyl-tRNA synthetase 65.5 3.6 0.00012 41.1 3.3 35 133-171 67-102 (392)
89 1jil_A Tyrrs, tyrosyl-tRNA syn 65.5 3.9 0.00013 41.3 3.6 39 133-177 35-74 (420)
90 3hzr_A Tryptophanyl-tRNA synth 65.4 3.6 0.00012 41.1 3.2 41 132-178 84-125 (386)
91 2j5b_A Tyrosyl-tRNA synthetase 63.7 5.5 0.00019 39.1 4.2 39 134-177 44-82 (348)
92 2yy5_A Tryptophanyl-tRNA synth 60.6 2.1 7.2E-05 42.1 0.5 38 134-177 8-45 (348)
93 2pid_A Tyrosyl-tRNA synthetase 60.0 5.6 0.00019 39.2 3.5 39 133-177 49-88 (356)
94 1iio_A Conserved hypothetical 59.4 7.5 0.00026 30.1 3.3 68 10-79 7-81 (84)
95 2jan_A Tyrosyl-tRNA synthetase 57.6 7.6 0.00026 39.3 4.0 39 133-177 35-74 (432)
96 3sz3_A Tryptophanyl-tRNA synth 57.0 2.8 9.5E-05 41.1 0.7 39 133-177 9-47 (341)
97 1h3f_A Tyrosyl-tRNA synthetase 52.5 8.5 0.00029 38.9 3.4 42 133-180 40-82 (432)
98 3prh_A Tryptophanyl-tRNA synth 47.5 5.3 0.00018 39.8 1.0 39 133-177 38-76 (388)
99 3jxe_A Tryptophanyl-tRNA synth 46.5 11 0.00036 37.7 2.9 39 133-177 76-115 (392)
100 3hv0_A Tryptophanyl-tRNA synth 40.1 16 0.00055 36.4 3.1 41 133-179 77-119 (393)
101 3i05_A Tryptophanyl-tRNA synth 38.4 15 0.00051 36.7 2.6 40 132-177 80-121 (395)
102 1r6t_A Tryptophanyl-tRNA synth 38.2 19 0.00065 36.8 3.4 40 132-177 157-198 (477)
103 2ip1_A Tryptophanyl-tRNA synth 37.9 19 0.00064 36.4 3.2 39 133-177 105-145 (432)
104 3foc_A Tryptophanyl-tRNA synth 35.9 22 0.00074 36.1 3.3 41 132-178 93-135 (451)
105 2cyc_A Tyrosyl-tRNA synthetase 35.9 23 0.00078 35.0 3.5 39 134-177 37-75 (375)
106 1r6u_A Tryptophanyl-tRNA synth 34.5 22 0.00077 35.9 3.2 40 132-177 110-151 (437)
107 3n9i_A Tryptophanyl-tRNA synth 30.6 15 0.00051 36.0 1.0 37 133-177 18-56 (346)
108 3tze_A Tryptophanyl-tRNA synth 29.2 28 0.00096 34.8 2.8 39 133-177 104-144 (406)
109 3tem_A Ribosyldihydronicotinam 24.8 82 0.0028 28.4 5.0 42 127-176 1-42 (228)
110 2dew_X Protein-arginine deimin 21.3 38 0.0013 35.8 2.1 39 133-177 603-641 (671)
111 4gi5_A Quinone reductase; prot 20.5 1.2E+02 0.004 28.5 5.2 40 126-172 21-60 (280)
112 1sw5_A Osmoprotection protein 20.2 84 0.0029 28.8 4.1 35 150-184 18-52 (275)
No 1
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=3.3e-85 Score=698.64 Aligned_cols=390 Identities=28% Similarity=0.443 Sum_probs=339.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCCC-CCccccccc-CCCCccccchhhHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCcee
Q 014355 10 NVKRELEKVFDLALKATVPNET-DVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIE 87 (426)
Q Consensus 10 ~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~-~~~~GD~~t~~a~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~i~ 87 (426)
++.+.+++.|.+++.+.+.... ...+.+++| +++||||+||+|| +|.+| +||++||++|+++|+.++.|+
T Consensus 30 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~v~~~~~~~~GD~a~~~~~--~k~~~------~~P~~iA~~i~~~l~~~~~i~ 101 (607)
T 1f7u_A 30 NIVDLMRNYISQELSKISGVDSSLIFPALEWTNTMERGDLLIPIPR--LRIKG------ANPKDLAVQWAEKFPCGDFLE 101 (607)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHGGGCEECSSGGGCSEEEEGGG--GCCTT------CCHHHHHHHHHHTCCCTTTEE
T ss_pred cHHHHHHHHHHHHHHHHhCCCccccccceeCCCCCCCCchhhHHHH--HHhcC------CCHHHHHHHHHHhccccCcee
Confidence 4566666666666665533111 123346655 6799999998776 38777 999999999999998778899
Q ss_pred eeEEecCcEEEEeeCHHHHHHH-HHHHHHcCCCCCC-ccCCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCC
Q 014355 88 SCSVAGPGFVNVVLSKNWMAKN-IQKMLVDGIETWA-PKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSN 165 (426)
Q Consensus 88 ~v~vagpGfiNf~l~~~~~~~~-l~~~l~~~~~~~~-~~~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G 165 (426)
+++++|| ||||+|+++++.+. +..++..++.++. +.+.+++|+||||||||+|||||||+||+|+||+|+|+|+++|
T Consensus 102 ~ve~ag~-fiN~~l~~~~~~~~~~~~i~~~~~~~G~~~~~~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G 180 (607)
T 1f7u_A 102 KVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLG 180 (607)
T ss_dssp EEEEETT-EEEEEECHHHHHHHHHHHHHHHGGGTTCCCCSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTT
T ss_pred EEEEcCC-EEEEEECHHHHHHHHHHHHHhhhhhcCCCcccCCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcC
Confidence 9999996 99999999999975 4556666655443 3467899999999999999999999999999999999999999
Q ss_pred CeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHhhcccCCC-------hHHHHHHHHHHHHHhcCC
Q 014355 166 VEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSD-------PAFKERAQQAVVRLQSGE 238 (426)
Q Consensus 166 ~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~-------~~~~~~a~~~~~~le~gd 238 (426)
|+|+++|||||||+||++|+.+ +.++++......+++.++.++|+++++.++.+ +.+.++|++.+.+||+||
T Consensus 181 ~~V~~~~~i~D~G~Q~~~l~~~-~~~~g~~~~~~~~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd 259 (607)
T 1f7u_A 181 WEVIRMNYLGDWGKQFGLLAVG-FERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGD 259 (607)
T ss_dssp CEEEEEEEEBCCSHHHHHHHHH-HHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTC
T ss_pred CCeeEEEeecCcchHHHHHHHH-HHHhCchhhccCCChHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999977 56676533333467889999999999998887 889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eecccccc-CcHHHHHHHHHHCCCEEEeCCeEEEEec--CCCCC-eEEE
Q 014355 239 PKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYN-PYIPGVIDELSKQGLVEESQGARVIFIE--GVNIP-LIIV 313 (426)
Q Consensus 239 ~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~Es~~~-~~v~~vi~~L~~~g~~~~~dGa~~~~~~--g~~~d-~Vl~ 313 (426)
++++++|++++++++++|+++|++|||+|| |.+||.|. +.+.++++.|+++|++|+++|++||+++ |++.| +|++
T Consensus 260 ~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~~~~~~~~vi~~L~~kG~~ye~dGa~~~~~~~~g~~~d~~v~~ 339 (607)
T 1f7u_A 260 EEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIVQ 339 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCHHHHHHHHHHHHHTTCEEEETTEEEEEGGGTCTTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchhhhhHHHHHHHHHHhCCCEEEECCcEEEEecccCCCCCceeEe
Confidence 999999999999999999999999999996 78999887 7899999999999999999999999998 44554 8999
Q ss_pred ecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcccc
Q 014355 314 KSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLR 393 (426)
Q Consensus 314 ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmS 393 (426)
||||++||.|+|||||+||+..+++|++|||||++|++||+|++++++++|+. +...|.|++||+|. |||
T Consensus 340 KsDG~~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~-----~~~~~~Hv~fg~v~-----kMS 409 (607)
T 1f7u_A 340 KSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFE-----WAKDLQHVNFGMVQ-----GMS 409 (607)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCG-----GGGGEEEECCCCEE-----SCC
T ss_pred ccCCCcCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCCC-----cCcEEEEecccccc-----ccc
Confidence 99999999999999999999888999999999999999999999999999993 45579999999997 499
Q ss_pred ccCCCceeHHHHHHHHHHHHHHHHHH
Q 014355 394 TRFSEVVRLVDLLDEAKNRSKAVLIE 419 (426)
Q Consensus 394 kR~G~~v~L~dLlde~~~~a~~~i~~ 419 (426)
||+|++|+|+||++++..+|.+.+++
T Consensus 410 kR~G~~v~L~dLlde~~~~a~~~~~~ 435 (607)
T 1f7u_A 410 TRKGTVVFLDNILEETKEKMHEVMKK 435 (607)
T ss_dssp GGGTCCCBHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999887764
No 2
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=2.2e-82 Score=680.78 Aligned_cols=394 Identities=22% Similarity=0.298 Sum_probs=339.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCccccchhhHHHHHhhcCCCCCCCChHHHHHHHHHhCCC--CCce
Q 014355 10 NVKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPP--SEMI 86 (426)
Q Consensus 10 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~~GD~~t~~a~~lak~~k~~~~~~~~P~~iA~~l~~~l~~--~~~i 86 (426)
.+++.+.+.|.+++.+.... ......+++| +++|||||||+||.|||.+| ++|++||++|+++|+. ++.|
T Consensus 4 ~~~~~i~~~~~~a~~~~~~~-~~~~~~v~~~~~~~~GD~~~n~a~~lak~~~------~~P~~iA~~i~~~l~~~~~~~i 76 (629)
T 2zue_A 4 EIRESVKERIEEIIKEIAPQ-WEGEIELKETPDPKLGDFGTPIAFKLAKLLK------RPPIEIAEKIVEKLKLNLPEGI 76 (629)
T ss_dssp TTHHHHHHHHHHHHHHHCTT-CCCCCCCEECSSGGGCSEEECHHHHHHHHHT------SCHHHHHHHHHHHHTTSCCTTE
T ss_pred HHHHHHHHHHHHHHHhcCcc-ccccceeeCCCCCCCCceeHHHHHHHHHHcC------CCHHHHHHHHHHHhhhccCCCe
Confidence 46677888888888764221 1122335555 67999999999999999999 9999999999999976 6789
Q ss_pred eeeEEecCcEEEEeeCHHHHHHH-HHHHHHcCCCCCC-ccCCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHC
Q 014355 87 ESCSVAGPGFVNVVLSKNWMAKN-IQKMLVDGIETWA-PKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFS 164 (426)
Q Consensus 87 ~~v~vagpGfiNf~l~~~~~~~~-l~~~l~~~~~~~~-~~~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~ 164 (426)
++|+++| |||||+|+++++... +..++..++.++. +.+.+++|+||||||||+|||||||+||+|+||+|||+|+++
T Consensus 77 ~~vevag-GfiN~~l~~~~~~~~~~~~i~~~~~~yG~~~~~~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~ 155 (629)
T 2zue_A 77 KDVKAVN-GYINVFIDYPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFL 155 (629)
T ss_dssp EEEEEET-TEEEEEECHHHHHHHHHHHHHHHGGGTTCCCTTTTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEcC-CEEEEEECHHHHHHHHHHHHHhcchhcCCCccCCCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHc
Confidence 9999999 999999999955554 5666777665443 346789999999999999999999999999999999999999
Q ss_pred CCeeEEecccCCchhHHHHHHHHHHhhCCCCCcc----------ccccH-HHHHHHHHHhhcccCCChHHHHHHHHHHHH
Q 014355 165 NVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDA----------NETAI-GELQEFYRRSKNRFDSDPAFKERAQQAVVR 233 (426)
Q Consensus 165 G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~----------~~~~i-~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~ 233 (426)
||+|+++|||||||+||++++.+.. +++..... +++++ ..+.+.|++++++++.+|+|.+++++.+.+
T Consensus 156 G~~V~~~~~i~D~G~Q~~~l~~~~~-~~g~~~~~~~~~~~~~~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~ 234 (629)
T 2zue_A 156 GYEVEVQNYIDDLGIQFAQVYWGYL-RLKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKK 234 (629)
T ss_dssp TCEEEEEEEECTTSHHHHHHHHHHH-HCHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred CCCceEEecccchhHHHHHHHHHHH-HhCCcchhhhhhhcccccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHh
Confidence 9999999999999999999986543 23221100 23455 446788999988888899999999999999
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eeccccc--cCcHHHHHHHHHHCCCEE-----EeCCeEEEEec-
Q 014355 234 LQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFY--NPYIPGVIDELSKQGLVE-----ESQGARVIFIE- 304 (426)
Q Consensus 234 le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~Es~~--~~~v~~vi~~L~~~g~~~-----~~dGa~~~~~~- 304 (426)
+|+|| .+|+++++.+++.|+++|++|||+|| |.+||.+ .+.+++++++|+++|++| +.+|++||+++
T Consensus 235 ~e~gd----~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~es~~~~~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~ 310 (629)
T 2zue_A 235 LESGE----LYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVRRKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRK 310 (629)
T ss_dssp HHHSS----SCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHHHTTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTT
T ss_pred ccccc----HHHHHHHHHHHHHHHHHHHHcCCccccccCcCccccchhHHHHHHHHHHCCCccccccCCcCCcEEEECcc
Confidence 99998 79999999999999999999999996 7789888 889999999999999999 88999999998
Q ss_pred -CCCCC---eEEEecCCccccccccHHHHHHH---------Hhhc-------------------CCCeEEEEeeCCcccc
Q 014355 305 -GVNIP---LIIVKSDGGFNYASTDLAALWYR---------LNEE-------------------KAEWIIYVTDVGQQLH 352 (426)
Q Consensus 305 -g~~~d---~Vl~ksDG~~tY~t~DiA~~~~r---------~~~~-------------------~~d~~i~V~g~~q~~h 352 (426)
|++++ +|++||||++||+++|+|||+|| ...+ ++|++|||||++|++|
T Consensus 311 ~g~~~~~~~~v~~ksdG~~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg~~~~~d~~IyV~g~~q~~~ 390 (629)
T 2zue_A 311 LFPDMKNPILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIVINVIGAEQKHP 390 (629)
T ss_dssp TCSSSSCCEEEEECTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTTSSCCCSEEEEEEEGGGHHH
T ss_pred cCCccccCceEEEecCCccccchhhHHHHHHHhhcccccccCCcccccccccCCCCCCCCCccCCCCcEEEEEeCcHhhH
Confidence 55566 89999999999999999999995 5444 8999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCC-CCcEEEEEeEEEEcCCCccccccCC--CceeHHHHHHHHHHHHHHHHHHhcc
Q 014355 353 FDMVFSAAKRAGWLSADDST-YPKASHVGFGLVLGEDGKRLRTRFS--EVVRLVDLLDEAKNRSKAVLIERGI 422 (426)
Q Consensus 353 f~~~~~~~~~lg~~~~~~~~-~~~~~Hv~~g~v~~~~g~kmSkR~G--~~v~L~dLlde~~~~a~~~i~~~~~ 422 (426)
|+|++++++++|+. + +..+.|++||+|+.+ |+|||||+| |+|+|+||++++.++|++.|++|+-
T Consensus 391 ~~~l~~~l~~lG~~-----~~~~~~~h~~~g~V~~~-~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~ 457 (629)
T 2zue_A 391 QLAIKYALQLLGFE-----DAAANLYHLAYEHVERP-EGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNP 457 (629)
T ss_dssp HHHHHHHHHHTTCH-----HHHHTEEEEEECCEEBT-TBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCC-----CCCCeEEEEEeeeEEcC-CCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999993 2 346999999999975 568999999 9999999999999999999999874
No 3
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=2.5e-76 Score=631.23 Aligned_cols=380 Identities=25% Similarity=0.311 Sum_probs=322.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCccccchhhHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCceeee
Q 014355 11 VKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESC 89 (426)
Q Consensus 11 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~~GD~~t~~a~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~i~~v 89 (426)
+++.+++.|.+++.+... .....+++| +++|||||||+ |.|||.+| ++|++||++|+++|+.++.|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~gD~~~~~-~~lak~~~------~~P~~iA~~i~~~l~~~~~~~~~ 71 (592)
T 1iq0_A 2 LRRALEEAIAQALKEMGV---PVRLKVARAPKDKPGDYGVPL-FALAKELR------KPPQAIAQELKDRLPLPEFVEEA 71 (592)
T ss_dssp CHHHHHHHHHHHHHTTSC---CCCCCCEECSTTSSCSEEEEC-SHHHHHTT------SCHHHHHHHHHHTCCCCTTEEEE
T ss_pred hHHHHHHHHHHHHHhcCC---CccceeeCCCCCCCCcchhhH-HHHHHHcC------CCHHHHHHHHHHhccccCcEEEE
Confidence 566778888888876421 122345555 78999999995 99999999 99999999999999877789999
Q ss_pred EEecCcEEEEeeCHHHHHHHHHH-HHHcCCCCCCccCCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCee
Q 014355 90 SVAGPGFVNVVLSKNWMAKNIQK-MLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEV 168 (426)
Q Consensus 90 ~vagpGfiNf~l~~~~~~~~l~~-~l~~~~~~~~~~~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V 168 (426)
+++| |||||+|+++++...+.. ++..++.++ +|+||||||||+|||||||+|++|+||+|||+|+++||+|
T Consensus 72 ~~~g-gfiN~~l~~~~~~~~~~~~~~~~~~~~g-------~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V 143 (592)
T 1iq0_A 72 VPVG-GYLNFRLRTEALLREALRPKAPFPRRPG-------VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREV 143 (592)
T ss_dssp EEET-TEEEEEECHHHHHHHHHSCCCCCCCEEE-------EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred EEcC-CEEEEEECHHHHHHHHHHHHHhcCcccC-------eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCce
Confidence 9999 999999999977666543 332332221 8999999999999999999999999999999999999999
Q ss_pred EEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 014355 169 LRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQI 248 (426)
Q Consensus 169 ~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~ 248 (426)
+++|||||||+||++++.+.. +++........+...+.++|+++++.++.+ ++.+++++.+.++|+|+ . +++
T Consensus 144 ~~~~~i~D~G~q~~~li~~~~-~~g~d~~~~~~~d~~~g~~y~~~~~~~~~~-~~~~~a~~~~~~~e~g~--~----~~~ 215 (592)
T 1iq0_A 144 LVLNYIDDTGRQAAETLFALR-HYGLTWDGKEKYDHFAGRAYVRLHQDPEYE-RLQPAIEEVLHALERGE--L----REE 215 (592)
T ss_dssp EEEEEECTTSHHHHHHHHHHH-HTTCCCCSSSCHHHHHHHHHHHHHHCTTTG-GGHHHHHHHHHHHHTTT--T----HHH
T ss_pred EEEeccCCcchHHHHHHHHHH-HhCCcccCCCCcchhHHHHHHHHHHHHHhh-hHHHHHHHHHHhCCchH--H----HHH
Confidence 999999999999999986654 455432211134566778999999888776 89999999999999998 1 889
Q ss_pred HHHHHHHHHHHHHHcCCcee-eeccccc--cCcHHHHHHHHHHCCCEE-----EeCCeEEEEec--CCCCC---eEEEec
Q 014355 249 CEISRKEFDKVYKRLRVDLE-EKGESFY--NPYIPGVIDELSKQGLVE-----ESQGARVIFIE--GVNIP---LIIVKS 315 (426)
Q Consensus 249 ~~~~~~~~~~~~~~Lgi~fd-~~~Es~~--~~~v~~vi~~L~~~g~~~-----~~dGa~~~~~~--g~~~d---~Vl~ks 315 (426)
++.+++.|+++|++|||+|| |.+||.+ .+.++++++.|+++|++| +.+|++||+++ |++++ +|++||
T Consensus 216 ~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g~~~G~~~~~~~~~g~~~~l~~~vi~ks 295 (592)
T 1iq0_A 216 VNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLRS 295 (592)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSSTTTTCEEEECTTTSCSCSCCEEEEECT
T ss_pred HHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHHHCCCcccCcccCcCCCEEEechhcCCCCCCCceEEEec
Confidence 99999999999999999996 6789877 889999999999999999 88999999998 55656 899999
Q ss_pred CCccccccccHHHHHHH--------Hhhc--------------------CCCeEEEEeeCCccccHHHHHHHHHHcCCCC
Q 014355 316 DGGFNYASTDLAALWYR--------LNEE--------------------KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLS 367 (426)
Q Consensus 316 DG~~tY~t~DiA~~~~r--------~~~~--------------------~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~ 367 (426)
||++||+++|+|||+|| ...+ ++|++|||||.+|++||+|++.+++++|+.
T Consensus 296 dG~~~Y~~~D~a~~~~Kl~l~~~~~~~~~~~~p~~r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~~~~~~alG~~- 374 (592)
T 1iq0_A 296 NGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYP- 374 (592)
T ss_dssp TSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCH-
T ss_pred CCceEEecchHHHHHHHhhhhhhhhhhhhhcCcchhhcccccCcccCCCCCCEEEEEEeccHHHHHHHHHHHHHHcCCC-
Confidence 99999999999999994 5434 899999999999999999999999999983
Q ss_pred CCCCC-CCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHHHHHhcc
Q 014355 368 ADDST-YPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGI 422 (426)
Q Consensus 368 ~~~~~-~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~i~~~~~ 422 (426)
+ +..+.|++||+|+. +|+|||||+||+|+++||++++.++|++.+.++|-
T Consensus 375 ----~~~~~~~H~~~g~v~~-~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~ 425 (592)
T 1iq0_A 375 ----ALAEKAHHLAYETVLL-EGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNP 425 (592)
T ss_dssp ----HHHTTEEEEEECCEEE-TTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCT
T ss_pred ----CCCCcEEEEEeeEEEc-CCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCC
Confidence 3 34799999999997 57789999999999999999999999999998874
No 4
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=2.4e-67 Score=544.70 Aligned_cols=292 Identities=16% Similarity=0.210 Sum_probs=246.2
Q ss_pred EeeCHHHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCch
Q 014355 99 VVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWG 178 (426)
Q Consensus 99 f~l~~~~~~~~l~~~l~~~~~~~~~~~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G 178 (426)
|+|+++++...+.+++..++.++....++++|+||||||||||||||||+||+++||+|||+++++||+|+|+|||||||
T Consensus 1 ~~l~~~~~~~~l~~i~~~~~~yG~~~~~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G 80 (464)
T 3fnr_A 1 MSLSKTFLNELANQALTNPNDFTKGEKKQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAG 80 (464)
T ss_dssp --CCHHHHHHHHHHHHHSGGGTTCCCCCSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCH
T ss_pred CEECHHHHHHHHHHHHHhHHhcCCCCCCCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCcc
Confidence 68999999999999998877655332378999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCC-----C-----CCccccccHHHHHH-HHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHH
Q 014355 179 TQFGMLIEYLFEKFP-----N-----SEDANETAIGELQE-FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQ 247 (426)
Q Consensus 179 ~Q~~~l~~~~~~~~~-----~-----~~~~~~~~i~~l~~-~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~ 247 (426)
+||++|+.++..+|. . ...+.++++.++++ ++++....+. +|++...+|++
T Consensus 81 ~Q~g~l~~~~~~~y~~~~~~~~~~~p~~~y~g~~~~~~a~~~~~~~~~~~~------------------~~~~~~~~~~~ 142 (464)
T 3fnr_A 81 NQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFF------------------SEENIPSLADW 142 (464)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCCCCCSSCCCSHHHHHHHHHHHHHHCGGGC------------------SGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhhcCccHHHHHHHHHHHhcchhhc------------------CcHHHHHHHHH
Confidence 999999987744321 1 11245566666643 3333232221 25556689999
Q ss_pred HHHHHHHHHHHHHHHcCCcee-eecc-ccccCcHHHHHHHHHHCCCEEEeCCeEEEEec--CCCCCeEEEecCCcccccc
Q 014355 248 ICEISRKEFDKVYKRLRVDLE-EKGE-SFYNPYIPGVIDELSKQGLVEESQGARVIFIE--GVNIPLIIVKSDGGFNYAS 323 (426)
Q Consensus 248 ~~~~~~~~~~~~~~~Lgi~fd-~~~E-s~~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~--g~~~d~Vl~ksDG~~tY~t 323 (426)
+++.++++|+++|++|||+|| |++| |+|. .+++++++|+++|++|++|||+||+++ |+++|+||+||||+|||+|
T Consensus 143 ~~~~~l~~~~~~~~~l~V~fD~~~~Ess~~~-~~~~vv~~L~~~g~~~e~dGa~~~~~~~~g~~~~~vl~ksDG~~~Y~t 221 (464)
T 3fnr_A 143 AKDKMLVLIKQNLEQAKIKIDSYVSERSYYD-ALNATLESLKEHKGIYEQEGKIWLASSQKGDEKDRVIIREDGRGTYLA 221 (464)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSCEEEGGGGST-THHHHHHHHHHTTCEEEETTEEEECGGGGTCSSCEEEECTTSCBCHHH
T ss_pred HHHHHHHHHHHHHHHhCCCceeecCHHHHHH-HHHHHHHHHHHCCCEEEeCCeEEEEecccCCCCceEEEeCCCceehhh
Confidence 999999999999999999996 8899 6777 999999999999999999999999987 6778999999999999999
Q ss_pred ccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEE-EcCCCc--cccccCCCce
Q 014355 324 TDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLV-LGEDGK--RLRTRFSEVV 400 (426)
Q Consensus 324 ~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v-~~~~g~--kmSkR~G~~v 400 (426)
+|||||++|+ .+++|++|||+|+||++||++++++++++|+.+ ..+.|+.+||| .+++|+ |||||+||+|
T Consensus 222 ~DiA~~~~r~-~~~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~~------~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v 294 (464)
T 3fnr_A 222 ADIVYHKDKM-SRGYGKCINIWGADHHGYIPRMKAAMEFLGFDS------NNLEIILAQMVSLLKDGEPYKMSKRAGNFI 294 (464)
T ss_dssp HHHHHHHHHH-TSSCSEEEEEEEGGGGGGHHHHHHHHHTTTCCG------GGEEEEEECCEEEEETTEECCC---CCSSC
T ss_pred HHHHHHHHHH-HcCCCeEEEEecCcHHHHHHHHHHHHHHcCCCc------cceEEEEeeeEEecCCCcccCCcCcCCCCC
Confidence 9999999999 468999999999999999999999999999942 37899999999 456775 9999999999
Q ss_pred eHHHHHHHHHHHHHHH
Q 014355 401 RLVDLLDEAKNRSKAV 416 (426)
Q Consensus 401 ~L~dLlde~~~~a~~~ 416 (426)
+++||++++...|.+.
T Consensus 295 ~l~dll~~~g~dalRy 310 (464)
T 3fnr_A 295 LMSDVVDEIGSDALRY 310 (464)
T ss_dssp BHHHHHHHHCHHHHHH
T ss_pred CHHHHHhhccHHHHHH
Confidence 9999999988777654
No 5
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.97 E-value=8.1e-31 Score=270.48 Aligned_cols=234 Identities=18% Similarity=0.135 Sum_probs=185.4
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
.+++|.+++|+|||++++||||+|+++++|+|+|+|++.||+|..+.+++|+|..+-.-+
T Consensus 22 ~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A-------------------- 81 (462)
T 3tqo_A 22 ESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRA-------------------- 81 (462)
T ss_dssp STTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHH--------------------
T ss_pred CCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHH--------------------
Confidence 467899999999999999999999999999999999999999999999999985443211
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-ee-ccccccCcHHHHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EK-GESFYNPYIPGVI 283 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~-~Es~~~~~v~~vi 283 (426)
.+ .|. .|+++++.+.+.|.+++++|||.++ +. ..+.|.+.+.+++
T Consensus 82 --------~~--------------------~g~-----~~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i 128 (462)
T 3tqo_A 82 --------GE--------------------NKE-----SPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLI 128 (462)
T ss_dssp --------HH--------------------TTS-----CHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHH
T ss_pred --------HH--------------------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCccccChhhHHHHHHHHH
Confidence 10 111 2677889999999999999999994 44 5678888999999
Q ss_pred HHHHHCCCEEEe-CCeEEEEec-----C-----------------------CCCCeEEEec--CCcccccccc----HHH
Q 014355 284 DELSKQGLVEES-QGARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYASTD----LAA 328 (426)
Q Consensus 284 ~~L~~~g~~~~~-dGa~~~~~~-----g-----------------------~~~d~Vl~ks--DG~~tY~t~D----iA~ 328 (426)
++|.++|++|+. +|.+||+++ | +..|++|+|. +|.|.|.+++ .+|
T Consensus 129 ~~L~ekG~aY~~~~g~Vyfdv~~~~~yg~Ls~~~~~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGW 208 (462)
T 3tqo_A 129 QKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGW 208 (462)
T ss_dssp HHHHHHTSEEECTTSCEEECTTTCTTTTTTTTCSCC------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECH
T ss_pred HHHHHCCCEEEecCCcEEeccccccccccccCCChHHhhccCccccccccCCccccceeeecCCCCCcccCCCCCCCCCC
Confidence 999999999998 799999864 1 1247999985 7999999987 567
Q ss_pred HHHHHh--hcCCCeEEEEeeCCccccHHHH-HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHH
Q 014355 329 LWYRLN--EEKAEWIIYVTDVGQQLHFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDL 405 (426)
Q Consensus 329 ~~~r~~--~~~~d~~i~V~g~~q~~hf~~~-~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dL 405 (426)
|+.+.. ...+..-+||+|.++++.|+++ ..+++.....+ .+++..|.|. |+|. .+|+|||||.||+|++.|+
T Consensus 209 HiEcsam~~~~lG~~~dih~gG~Dl~FpHheneiaqs~a~~g--~p~~~~w~H~--g~v~-~~G~KMSKSlGN~i~~~dl 283 (462)
T 3tqo_A 209 HIECSAMSSSILGQPFDIHGGGLDLKFPHHENEIAQSEAGEE--KPFVKLWMHA--GLLE-INKEKMSKSLGNIISIREA 283 (462)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHHHHHHHHHS--SCCEEEEEEE--CCEE-ETTEECCTTTTCCCBHHHH
T ss_pred ceehHHHHHHhcCCCeEEEccccccccHHHHhHHHHHHHHcC--CCcceEEEEc--cEEe-cCCcCccccCCCcccHHHH
Confidence 776521 1112245889999999999988 45555432211 1577789997 5576 4799999999999999999
Q ss_pred HHHHHHHHHHHH
Q 014355 406 LDEAKNRSKAVL 417 (426)
Q Consensus 406 lde~~~~a~~~i 417 (426)
+++....|....
T Consensus 284 l~~~g~dalR~~ 295 (462)
T 3tqo_A 284 LKESDVEVLRYF 295 (462)
T ss_dssp HHHSCHHHHHHH
T ss_pred HhhcChHHhhhh
Confidence 999887776644
No 6
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.97 E-value=3.9e-30 Score=266.92 Aligned_cols=228 Identities=14% Similarity=0.174 Sum_probs=175.0
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
.+++|.+++|||||+|++||||+|++++||+|+|+|++.||+|.++++++|+|..+.
T Consensus 19 ~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~----------------------- 75 (461)
T 1li5_A 19 HAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKII----------------------- 75 (461)
T ss_dssp STTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHH-----------------------
T ss_pred CCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHH-----------------------
Confidence 467899999999999999999999999999999999999999999999999984332
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCce-eee-ccccccCcHHHHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEK-GESFYNPYIPGVI 283 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-d~~-~Es~~~~~v~~vi 283 (426)
.++. +.|. .|+++++.+.+.|+++|++|||.+ |++ .+|.|.+.+.+++
T Consensus 76 -----~~A~--------------------~~g~-----~~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t~~~~~~~~~i 125 (461)
T 1li5_A 76 -----KRAN--------------------ENGE-----SFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELT 125 (461)
T ss_dssp -----HHHH--------------------HTTC-----CHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHH
T ss_pred -----HHHH--------------------HcCC-----CHHHHHHHHHHHHHHHHHHcCCCCCcccccccchHHHHHHHH
Confidence 1111 0122 278889999999999999999998 655 4577888899999
Q ss_pred HHHHHCCCEEEe-CCeEEEEecC----------------------------CCCCeEEEec--CCcccccccc-------
Q 014355 284 DELSKQGLVEES-QGARVIFIEG----------------------------VNIPLIIVKS--DGGFNYASTD------- 325 (426)
Q Consensus 284 ~~L~~~g~~~~~-dGa~~~~~~g----------------------------~~~d~Vl~ks--DG~~tY~t~D------- 325 (426)
++|.++|++|+. +|++||+++. +..|++|+|+ +|.|+|.+++
T Consensus 126 ~~L~~~G~aY~~~~g~v~f~~~~~~~yg~lsg~~~~~l~~g~rv~~~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgW 205 (461)
T 1li5_A 126 EQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGW 205 (461)
T ss_dssp HHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC----------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECS
T ss_pred HHHHHCCCEEEecCCCEEEecccccccccccCCCHHHhhcCCcccchhcccCccceEEEccCCCCCCcccCCCCCcCCCc
Confidence 999999999999 9999997531 0148999987 8999998753
Q ss_pred -HHHHHHHHhhcCCCeEEEEeeCCccccHHHH-HHHHHH---cCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCce
Q 014355 326 -LAALWYRLNEEKAEWIIYVTDVGQQLHFDMV-FSAAKR---AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 400 (426)
Q Consensus 326 -iA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~-~~~~~~---lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v 400 (426)
+++......-.+. .++|++.+++..|+++ +.+++. +|+ ++...+.|. |+|.. +|+|||||+||+|
T Consensus 206 hiecsam~~~~lg~--~~dih~gG~Dl~fpH~~~~~aq~~a~~g~-----~~~~~~~h~--g~v~~-~G~KMSKS~GN~v 275 (461)
T 1li5_A 206 HIECSAMNCKQLGN--HFDIHGGGSDLMFPHHENEIAQSTCAHDG-----QYVNYWMHS--GMVMV-DREKMSKSLGNFF 275 (461)
T ss_dssp SHHHHHHHHHHHCS--SEEEEECBGGGTTTHHHHHHHHHHHHSSS-----CCEEEECCB--CCEEE-TTBCCCGGGTCCC
T ss_pred cchhHHHHHHHhCC--CceEEeccCccCchHHHHHHHHHHHhcCC-----CCCcEEEEe--eEEEE-CCeEccccCCCcc
Confidence 2221111111233 4567766666766655 555554 365 355678887 55765 6889999999999
Q ss_pred eHHHHHHHHHHHHHHH
Q 014355 401 RLVDLLDEAKNRSKAV 416 (426)
Q Consensus 401 ~L~dLlde~~~~a~~~ 416 (426)
+++|++++....|...
T Consensus 276 ~~~dll~~~g~dalR~ 291 (461)
T 1li5_A 276 TVRDVLKYYDAETVRY 291 (461)
T ss_dssp BHHHHHTTSCHHHHHH
T ss_pred ChhHHhhhCCHHHHHH
Confidence 9999999876666554
No 7
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.95 E-value=5.6e-28 Score=250.61 Aligned_cols=238 Identities=18% Similarity=0.147 Sum_probs=165.0
Q ss_pred eEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHH
Q 014355 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (426)
Q Consensus 129 kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (426)
+|-++.|+|+|++++||||+|+++++|+|+|+|+..||+|..+.+++|+|+|.+.- ...+++|.
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~------------DehddKI~---- 105 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDL------------DDGEDKVA---- 105 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC----------------------------
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCC------------CCCCcHHH----
Confidence 89999999999999999999999999999999999999999999999999997721 01234332
Q ss_pred HHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeee--ccccccCcHHHHHHHH
Q 014355 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK--GESFYNPYIPGVIDEL 286 (426)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~--~Es~~~~~v~~vi~~L 286 (426)
.++. + +|- .|+++++.+.+.|.+++++|||.++++ ..+.|.+.+.+++++|
T Consensus 106 --~~A~--------------~------~g~-----~~~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L 158 (501)
T 3sp1_A 106 --KTAR--------------E------KGL-----TVYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKIL 158 (501)
T ss_dssp -----------------------------C-----CHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHH
T ss_pred --HHHH--------------H------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHHHHHHHH
Confidence 1111 1 121 257888999999999999999999643 3477788899999999
Q ss_pred HHCCCEEEeCCeEEEEec-----C------------------------CCCCeEEEec-----CCcccccccc----HHH
Q 014355 287 SKQGLVEESQGARVIFIE-----G------------------------VNIPLIIVKS-----DGGFNYASTD----LAA 328 (426)
Q Consensus 287 ~~~g~~~~~dGa~~~~~~-----g------------------------~~~d~Vl~ks-----DG~~tY~t~D----iA~ 328 (426)
.++|++|+.+|.+||+++ | +..|++|||+ .|.+.|.++. ..|
T Consensus 159 ~~kG~aY~~~g~Vyf~v~~f~~yG~ls~~~~~~~~~~g~r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGW 238 (501)
T 3sp1_A 159 EEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSW 238 (501)
T ss_dssp HHTTCEEEETTEEEECGGGCTTTTTTTC-----------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECH
T ss_pred HHCCCEEEeCCcEEecCCccCCccccCCCChhhhhccCCccCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCc
Confidence 999999999999999763 1 1137899987 4888888875 346
Q ss_pred HHHHH----hhcCCCeEEEEeeCCccccHHHH-HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHH
Q 014355 329 LWYRL----NEEKAEWIIYVTDVGQQLHFDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 403 (426)
Q Consensus 329 ~~~r~----~~~~~d~~i~V~g~~q~~hf~~~-~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~ 403 (426)
|+.+- .-+| .-++|++.+.++-|+++ +.+++...... .+++..|.|. |+|.. +|+||||+.||+|++.
T Consensus 239 hiEcsam~~~~lg--~~~DIH~gG~DLifpHheneiAqs~a~~g--~~~~~~w~H~--g~v~~-~G~KMSKSlGN~it~~ 311 (501)
T 3sp1_A 239 HLECAAMNLEYFK--DALDIHLGGVDHIGVHHINEIAIAECFLN--KKWCDVFVHG--EFLIM-DYNKMSKSRGNFITVK 311 (501)
T ss_dssp HHHHHHHHHHHTT--TCCCEEEEEGGGTTTHHHHHHHHHHHHHT--SCCCSEEEEE--CCEEC-C----------CCCHH
T ss_pred hHHHHHHHHHHcC--CCceEEeeccccccchHHHHHHHHHHccC--CCCCeEEEEe--eeEee-CCeEccccCCCcCCHH
Confidence 76541 1133 23567888888888887 45555432211 2577889998 55874 7899999999999999
Q ss_pred HHHHH-HHHHHHHH
Q 014355 404 DLLDE-AKNRSKAV 416 (426)
Q Consensus 404 dLlde-~~~~a~~~ 416 (426)
|++++ ....+...
T Consensus 312 dll~~gyg~d~lR~ 325 (501)
T 3sp1_A 312 DLEDQNFSPLDFRY 325 (501)
T ss_dssp HHHHTTCCHHHHHH
T ss_pred HHHhcCCCHHHHHH
Confidence 99998 66665554
No 8
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.95 E-value=1.2e-26 Score=237.81 Aligned_cols=228 Identities=14% Similarity=0.087 Sum_probs=154.6
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHH
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (426)
+++|.+++|+|+|+||+||||+|++++||+|+|+|+..||+|..+++++|+|..+...+.
T Consensus 37 ~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~-------------------- 96 (414)
T 3c8z_A 37 GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAE-------------------- 96 (414)
T ss_dssp CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHH--------------------
T ss_pred CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHH--------------------
Confidence 567999999999999999999999999999999999999999999999999854432211
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCc-eee-eccccccCcHHHHHH
Q 014355 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVD-LEE-KGESFYNPYIPGVID 284 (426)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~-fd~-~~Es~~~~~v~~vi~ 284 (426)
+ .|. .|+++++.+.+.|++++++|||. +|+ .+++.|.+.+.++++
T Consensus 97 ----------------------~------~g~-----~~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~~~~~ 143 (414)
T 3c8z_A 97 ----------------------R------DGI-----DWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVE 143 (414)
T ss_dssp ----------------------H------HTC-----CHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHH
T ss_pred ----------------------H------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCcceecccchHHHHHHHHH
Confidence 0 011 24567888899999999999999 864 456778788999999
Q ss_pred HHHHCCCEEEeC----CeEEEEecCC--------------------------------CCCeEEEe--cCCcccccccc-
Q 014355 285 ELSKQGLVEESQ----GARVIFIEGV--------------------------------NIPLIIVK--SDGGFNYASTD- 325 (426)
Q Consensus 285 ~L~~~g~~~~~d----Ga~~~~~~g~--------------------------------~~d~Vl~k--sDG~~tY~t~D- 325 (426)
+|.++|++|+.+ |++||+++.. ..|++++| .+|.+.|.++.
T Consensus 144 ~L~~kG~~Y~~~~~~e~~~~f~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~~Wda~~g 223 (414)
T 3c8z_A 144 KLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFG 223 (414)
T ss_dssp HHHHHTSEEECSCSSCCCEEECTTSSTTTTTTTCCCHHHHHHHHHHTTCCTTCTTCSSTTCEEEEEECCTTSCCBCCTTC
T ss_pred HHHHCCCEEeccCCcCCCEEEEchhhhhhHhhcCCCHHHHHHHHhhccccccccccCCcchhhhcCCCCCCCCCCCCCCC
Confidence 999999999988 9999987510 02457777 46777775531
Q ss_pred ---HHHHHHHH----hhcCCCeEEEEeeCCccccHHHH---HHHHHHc-CCCCCCCCCCCcEEEEEeEEEEcCCCccccc
Q 014355 326 ---LAALWYRL----NEEKAEWIIYVTDVGQQLHFDMV---FSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRT 394 (426)
Q Consensus 326 ---iA~~~~r~----~~~~~d~~i~V~g~~q~~hf~~~---~~~~~~l-g~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSk 394 (426)
..||+.+. .-++ ..++|+..+.+..|.++ .+.+.++ |.. ++...+.|. |+|.. +|+||||
T Consensus 224 ~g~pgWhiec~a~~~~~~g--~~~di~~~G~D~~~~H~~~~~a~~~a~~g~~----~~~~~~~h~--g~v~~-~G~KMSK 294 (414)
T 3c8z_A 224 RGRPGWHVECSAIALTRIG--TGLDIQGGGSDLIFPHHEYSAAHAESVTGER----RFARHYVHT--GMIGW-DGHKMSK 294 (414)
T ss_dssp SEEECHHHHHHHHHHHHTC--SCEEEEEEEGGGTTTHHHHHHHHHHHHHCCS----CSEEEEEEE--CCBC---------
T ss_pred CCCCCccchhHHHHHHhcC--CCceEEEeccccccHHHHHHHHHHHHhcCCC----CcCeEEEEc--CEEec-CCeEccc
Confidence 12343321 1122 35566655445555443 2333444 652 344456776 56775 7889999
Q ss_pred cCCCceeHHHHHHH-HHHHHHHH
Q 014355 395 RFSEVVRLVDLLDE-AKNRSKAV 416 (426)
Q Consensus 395 R~G~~v~L~dLlde-~~~~a~~~ 416 (426)
|+||+|+++|++++ ....|...
T Consensus 295 S~GN~v~~~~ll~~g~g~D~lR~ 317 (414)
T 3c8z_A 295 SRGNLVLVSQLRAQGVDPSAIRL 317 (414)
T ss_dssp -----CBHHHHHHTTCCHHHHHH
T ss_pred ccCCcCCHHHHhhccCCcchhee
Confidence 99999999999998 66666554
No 9
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.94 E-value=6.4e-27 Score=247.41 Aligned_cols=228 Identities=11% Similarity=0.064 Sum_probs=156.7
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
.++++.|....|+|+||+||||+|++++||+|+|+++++||+|.++++++|+|.++...+...
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~----------------- 85 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKE----------------- 85 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH-----------------
T ss_pred CCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHc-----------------
Confidence 345899999999999999999999999999999999999999999999999999886543210
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eeccc--cccCcHHHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGES--FYNPYIPGV 282 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~Es--~~~~~v~~v 282 (426)
+ . .++++++.+.+.|++++++|||+|| +..++ .|.+.++++
T Consensus 86 --------g----~------------------------~~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~ 129 (536)
T 4dlp_A 86 --------G----I------------------------TPRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAI 129 (536)
T ss_dssp --------T----S------------------------CHHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHH
T ss_pred --------C----C------------------------CHHHHHHHHHHHHHHHHHHcCCCCCcceeCCCHHHHHHHHHH
Confidence 0 0 1234677788899999999999996 43443 477889999
Q ss_pred HHHHHHCCCEEEeCCeEEEEec---------------C------------------------------------------
Q 014355 283 IDELSKQGLVEESQGARVIFIE---------------G------------------------------------------ 305 (426)
Q Consensus 283 i~~L~~~g~~~~~dGa~~~~~~---------------g------------------------------------------ 305 (426)
+++|.++|++|+.++++|+... |
T Consensus 130 ~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P 209 (536)
T 4dlp_A 130 WQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMP 209 (536)
T ss_dssp HHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEES
T ss_pred HHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEeccceEEecHHHHHHHHHHHHhCCCccCc
Confidence 9999999999998777765321 0
Q ss_pred -------------CCCCeEEEec-------------CCccccccccHHHHH--------HHHhhcCCCeEEEEeeCCccc
Q 014355 306 -------------VNIPLIIVKS-------------DGGFNYASTDLAALW--------YRLNEEKAEWIIYVTDVGQQL 351 (426)
Q Consensus 306 -------------~~~d~Vl~ks-------------DG~~tY~t~DiA~~~--------~r~~~~~~d~~i~V~g~~q~~ 351 (426)
.-+|..|.|+ +..++|+..+++|.- .+++. ....-++|+|.||..
T Consensus 210 ~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~yvWfda~~~y~s~~~~~~~~~~~~~-~~p~dv~~~G~D~~~ 288 (536)
T 4dlp_A 210 AERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMYVWVDALTNYITALGYPDTTDERWA-YWPANAHIIGKDISR 288 (536)
T ss_dssp HHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSEECHHHHHHHHHHHTTTTTCTTSGGGG-GCSCSEEEEEGGGHH
T ss_pred HHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCceEEeeCCcHHHHHhcCCCCCchHHHh-hCCcceEEeechHHH
Confidence 1145667775 233445555555531 11211 122348899999876
Q ss_pred cHHHHH--HHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHH
Q 014355 352 HFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 352 hf~~~~--~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~ 416 (426)
|..++ +.+.++|+. ++...+.| |+|+. +|+|||||+||+|++.|++++....|...
T Consensus 289 -fh~~~~~a~l~a~g~~----~~~~v~~h---g~v~~-~G~KMSKS~GNvi~p~d~i~~~GaDalR~ 346 (536)
T 4dlp_A 289 -FHAVYWPAFLMSAQLP----LPKRVFAH---GFLFN-RGEKMSKSVGNVIDPFELVERYGLDQLRY 346 (536)
T ss_dssp -HHHTHHHHHHHHTTCC----CCSCEEEE---CCEEC-------------CCHHHHHHHHCHHHHHH
T ss_pred -HHHHHHHHHHHHCCCC----CCcEEEee---eeEee-CCceecccCCCCCCHHHHHHHcCcHHHHH
Confidence 66655 566778874 23333444 77875 89999999999999999999988877764
No 10
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.93 E-value=1.2e-25 Score=235.65 Aligned_cols=227 Identities=18% Similarity=0.147 Sum_probs=161.9
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHH
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (426)
.+++.|..++|||+|++||||+|+++++|+++|+++..||+|.+...++|+|..+...+.
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~-------------------- 61 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQ-------------------- 61 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHH--------------------
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHH--------------------
Confidence 468999999999999999999999999999999999999999999999998854432111
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeee-cc--ccccCcHHHHH
Q 014355 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-GE--SFYNPYIPGVI 283 (426)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~-~E--s~~~~~v~~vi 283 (426)
+. |.+ ++++++.+.+.|++++++|||.+|++ .. ..|.+.+.+++
T Consensus 62 --------~~--------------------g~~-----~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~ 108 (500)
T 2d5b_A 62 --------AA--------------------GED-----PKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVL 108 (500)
T ss_dssp --------HH--------------------TSC-----HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHH
T ss_pred --------Hc--------------------CCC-----HHHHHHHHHHHHHHHHHHhCCcCCCCcccCCHHHHHHHHHHH
Confidence 00 110 23467888899999999999999743 33 34778899999
Q ss_pred HHHHHCCCEEEe--CCeEEEEec-----CC--------------------------------------------------
Q 014355 284 DELSKQGLVEES--QGARVIFIE-----GV-------------------------------------------------- 306 (426)
Q Consensus 284 ~~L~~~g~~~~~--dGa~~~~~~-----g~-------------------------------------------------- 306 (426)
++|.++|++|+. .|.+|++++ ++
T Consensus 109 ~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~ 188 (500)
T 2d5b_A 109 KKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRN 188 (500)
T ss_dssp HHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHH
T ss_pred HHHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHHH
Confidence 999999999976 354443211 00
Q ss_pred ---------CCCeEEEe--cC---Cccc----------ccccc------HHHHHHH-Hh-hcCCCeEEEEeeCCccccHH
Q 014355 307 ---------NIPLIIVK--SD---GGFN----------YASTD------LAALWYR-LN-EEKAEWIIYVTDVGQQLHFD 354 (426)
Q Consensus 307 ---------~~d~Vl~k--sD---G~~t----------Y~t~D------iA~~~~r-~~-~~~~d~~i~V~g~~q~~hf~ 354 (426)
..|..|.| .+ |.|. |+... ++|+..+ +. .++.| +++.|.||.. |.
T Consensus 189 ~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~~g~~~~~~~~~~~p~d--i~~~G~D~~~-fh 265 (500)
T 2d5b_A 189 EVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHA--WHLIGKDILK-PH 265 (500)
T ss_dssp HHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGGE--EEEEEGGGHH-HH
T ss_pred HHHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHHcCCCCCchHHHcCCCe--EEEEeechhh-hH
Confidence 02444555 33 5422 11111 1222111 11 13444 8899999876 66
Q ss_pred HHH--HHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHH
Q 014355 355 MVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 355 ~~~--~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~ 416 (426)
+++ +.+.++|+. +...+.|+ |+|++++|+|||||+||+|+++|++++....|...
T Consensus 266 ~~~~~a~~~~~g~~-----~~~~v~~~--G~v~~~~G~KMSKS~GN~i~p~d~i~~~g~DalR~ 322 (500)
T 2d5b_A 266 AVFWPTMLKAAGIP-----MYRHLNVG--GFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRY 322 (500)
T ss_dssp HTHHHHHHHHHTCC-----CCSEEEEE--CCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHcCCC-----CCcEEEEC--ceEEeCCCCcccccCCCCCCHHHHHHhcCcHHHHH
Confidence 666 556678873 33567777 77998899999999999999999999988777664
No 11
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.93 E-value=7.6e-26 Score=240.43 Aligned_cols=229 Identities=15% Similarity=0.104 Sum_probs=162.3
Q ss_pred CCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHH
Q 014355 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (426)
Q Consensus 125 ~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (426)
..++++.|..++|||+||+||||+|++++||+|+|++|.+||+|.++++++|+|.++...+... +
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~-----------g---- 87 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQ-----------G---- 87 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHT-----------T----
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHc-----------C----
Confidence 4568899999999999999999999999999999999999999999999999999886543210 0
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeee-cc--ccccCcHHH
Q 014355 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-GE--SFYNPYIPG 281 (426)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~-~E--s~~~~~v~~ 281 (426)
.+ .+++++.+.+.|++++++|||+||.+ .+ ..|.+.+++
T Consensus 88 --------------~~------------------------p~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~ 129 (564)
T 3kfl_A 88 --------------VS------------------------PMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQD 129 (564)
T ss_dssp --------------CC------------------------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHH
T ss_pred --------------CC------------------------HHHHHHHHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHH
Confidence 01 13467777889999999999999743 33 357789999
Q ss_pred HHHHHHHCCCEEEeCCeEEEEec------------C--------------------------------------------
Q 014355 282 VIDELSKQGLVEESQGARVIFIE------------G-------------------------------------------- 305 (426)
Q Consensus 282 vi~~L~~~g~~~~~dGa~~~~~~------------g-------------------------------------------- 305 (426)
++++|.++|++|+.++..|+... |
T Consensus 130 ~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~ 209 (564)
T 3kfl_A 130 IWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDH 209 (564)
T ss_dssp HHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHC
T ss_pred HHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCCCCEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhC
Confidence 99999999999987655554321 0
Q ss_pred -------------------CCCCeEEEe---cC-----------Ccccccccc-----HHHHHH---H---------H--
Q 014355 306 -------------------VNIPLIIVK---SD-----------GGFNYASTD-----LAALWY---R---------L-- 333 (426)
Q Consensus 306 -------------------~~~d~Vl~k---sD-----------G~~tY~t~D-----iA~~~~---r---------~-- 333 (426)
.-+|..|.| ++ +...|.--| ++...| + +
T Consensus 210 ~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~ 289 (564)
T 3kfl_A 210 PNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHA 289 (564)
T ss_dssp TTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTT
T ss_pred CCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCCCCEEEEeccCcHHHHHHhCccccccccccchhcchh
Confidence 012344444 11 122222222 122111 0 1
Q ss_pred hhcCCCeEEEEeeCCccccHHHHH--HHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHH
Q 014355 334 NEEKAEWIIYVTDVGQQLHFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKN 411 (426)
Q Consensus 334 ~~~~~d~~i~V~g~~q~~hf~~~~--~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~ 411 (426)
+ .....-++++|.||.. |..++ +.+.++|+. ++...+.| |+| +.+|+|||||+||+|++.|++++...
T Consensus 290 ~-~~wp~dv~~~GkDii~-FH~~~wpa~L~a~g~~----~~~~v~~h---g~v-~~~G~KMSKS~GNvV~p~d~i~~~G~ 359 (564)
T 3kfl_A 290 L-NRWPADVHVVGKDILK-FHAIYWPAFLMSAELP----LPERLVSH---GWW-TKDHKKISKSLGNAFDPVEKAKEFGI 359 (564)
T ss_dssp T-TCCSCSEEEEEGGGHH-HHHTHHHHHHHHTTCC----CCSCEEEE---CCE-EETTEECCTTTTCCCCHHHHHHHHCH
T ss_pred h-hcCccceEEEeecccc-hHHHHHHHHHHhCCCC----CCcEEEEc---ccE-eeCCccccccCCCCCCHHHHHHHcCc
Confidence 1 1111238899999976 66655 666788874 23333333 778 46899999999999999999999888
Q ss_pred HHHHH
Q 014355 412 RSKAV 416 (426)
Q Consensus 412 ~a~~~ 416 (426)
.|...
T Consensus 360 DalR~ 364 (564)
T 3kfl_A 360 DALKY 364 (564)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 12
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.91 E-value=4.3e-24 Score=223.74 Aligned_cols=227 Identities=18% Similarity=0.184 Sum_probs=156.8
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHH
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (426)
.+++.|...+|||||++||||+|+++++|+++|+++..||+|.+...++|+|..+..-+.
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~-------------------- 63 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAE-------------------- 63 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHH--------------------
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHH--------------------
Confidence 468999999999999999999999999999999999999999999999998865542110
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeee---ccccccCcHHHHH
Q 014355 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK---GESFYNPYIPGVI 283 (426)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~---~Es~~~~~v~~vi 283 (426)
+ +|.+ ++++++.+.+.|++++++|||.+|++ ++..|.+.+.+++
T Consensus 64 --------~--------------------~g~~-----~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~ 110 (497)
T 2csx_A 64 --------E--------------------LGIS-----PKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVF 110 (497)
T ss_dssp --------H--------------------SSSC-----HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHH
T ss_pred --------H--------------------cCCC-----HHHHHHHHHHHHHHHHHHhCCcCCCCccCCCHHHHHHHHHHH
Confidence 0 0110 13467788899999999999999743 2344788899999
Q ss_pred HHHHHCCCEEEe--CCeEEEEec-----------------C---------------------------------------
Q 014355 284 DELSKQGLVEES--QGARVIFIE-----------------G--------------------------------------- 305 (426)
Q Consensus 284 ~~L~~~g~~~~~--dGa~~~~~~-----------------g--------------------------------------- 305 (426)
++|.++|++|+. .|.+|+.++ |
T Consensus 111 ~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~ 190 (497)
T 2csx_A 111 EECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRR 190 (497)
T ss_dssp HHHHHTTCEEEEEC---------------------------------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHH
T ss_pred HHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHH
Confidence 999999999986 465554321 0
Q ss_pred ---------CCCCeEEEe--cC---Ccccccc-ccH------------HHHHHH-HhhcCCCeEEEEeeCCccccHHHHH
Q 014355 306 ---------VNIPLIIVK--SD---GGFNYAS-TDL------------AALWYR-LNEEKAEWIIYVTDVGQQLHFDMVF 357 (426)
Q Consensus 306 ---------~~~d~Vl~k--sD---G~~tY~t-~Di------------A~~~~r-~~~~~~d~~i~V~g~~q~~hf~~~~ 357 (426)
.-.|..+.| .+ |++.... .++ +..... ..-+.+| +++.|.||.. |.+++
T Consensus 191 ~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~~~~~~~~~p~d--i~~~G~D~~~-~H~~~ 267 (497)
T 2csx_A 191 NEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALEDKVEIYWPAD--LHLVGKDILR-FHTVY 267 (497)
T ss_dssp HHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTTTTTHHHHCSCS--CEEEEGGGHH-HHHTH
T ss_pred HHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccchhhcccCCCcchhhCCce--EEEeecchhH-hHHHH
Confidence 002445555 33 5544311 011 000000 0123555 7789998865 44444
Q ss_pred --HHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHHH
Q 014355 358 --SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVL 417 (426)
Q Consensus 358 --~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~i 417 (426)
+.+.++|+. +...+.|+ |+|+. +|+|||||+||+|+++|++++....|....
T Consensus 268 ~~a~l~~~g~~-----~~~~~~~~--G~v~~-~G~KMSKS~GN~i~~~dli~~~g~DalR~~ 321 (497)
T 2csx_A 268 WPAFLMSLGYE-----LPKKVFAH--GWWTV-EGKKMSKTLGNVVDPYEVVQEYGLDEVRYF 321 (497)
T ss_dssp HHHHHHHHTCC-----CCSCEEEE--CCEES-SSSBCCTTTTCCCCHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHcCCC-----CCcEEEEC--cEEEe-CCceeCCcCCCCCCHHHHHHHCCcHHHHHH
Confidence 556678873 33567777 67887 799999999999999999999887776643
No 13
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.91 E-value=5.4e-24 Score=225.82 Aligned_cols=218 Identities=17% Similarity=0.181 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHH
Q 014355 102 SKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQF 181 (426)
Q Consensus 102 ~~~~~~~~l~~~l~~~~~~~~~~~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~ 181 (426)
.+.++...+.++++.|..++.. ..++|.+.|+ |||||+|||||+|++++++.+||- +-|.=+.| |.|.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilR---ieDt---- 171 (592)
T 3al0_C 104 GSMFITGAFFDILEVGPKKIRR--CFELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFILR---IEDT---- 171 (592)
T ss_dssp ----------------CCCCCC--CCCCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEEC---BCCC----
T ss_pred ChHHHHHHHHHHHHcChhhccc--CCCeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEE---ecCc----
Confidence 3567788888888887654432 3367999999 999999999999999999999984 23322222 2331
Q ss_pred HHHHHHHHhhCCCCCccccccHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 014355 182 GMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYK 261 (426)
Q Consensus 182 ~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~ 261 (426)
|++ +....+.+.+.++|+
T Consensus 172 --------------------------------------D~~------------------------r~~~~~~~~I~~dL~ 189 (592)
T 3al0_C 172 --------------------------------------DTE------------------------RSSREYEQQILESLR 189 (592)
T ss_dssp --------------------------------------CSS------------------------SCCHHHHHHHHHHHH
T ss_pred --------------------------------------Chh------------------------hccHHHHHHHHHHHH
Confidence 000 001223456778999
Q ss_pred HcCCceeee----------ccccccCcHHHHHHHHHHCCCEEE-----------------------eCC---eEEEEec-
Q 014355 262 RLRVDLEEK----------GESFYNPYIPGVIDELSKQGLVEE-----------------------SQG---ARVIFIE- 304 (426)
Q Consensus 262 ~Lgi~fd~~----------~Es~~~~~v~~vi~~L~~~g~~~~-----------------------~dG---a~~~~~~- 304 (426)
.||+.+|.. .-|.+.+...+++++|.++|.+|. .+| +++|+++
T Consensus 190 wlGl~~D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~ 269 (592)
T 3al0_C 190 WCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLP 269 (592)
T ss_dssp HTTCCCSBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCS
T ss_pred HcCCCCCCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCC
Confidence 999998642 234444567899999999999997 356 6777764
Q ss_pred -----------------CCCCCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCC
Q 014355 305 -----------------GVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLS 367 (426)
Q Consensus 305 -----------------g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~ 367 (426)
++..|+||+|+||.|||. +|..++.. ..|++++| +|.||..+-+++..+.++||+.
T Consensus 270 ~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dg~ptY~---~a~vvDD~-~~githvi--rG~D~~~~t~~q~~l~~alg~~- 342 (592)
T 3al0_C 270 GKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYN---FAVVVDDH-LMRISHVF--RGEDHLSNTPKQLMIYEAFGWE- 342 (592)
T ss_dssp SCCEECCTTTCSEECCSSSSCCEEEECTTSCCCHH---HHHHHHHH-HTTCSBCC--EEGGGGGGHHHHHHHHTTTTCC-
T ss_pred CCceeeecccceeeeccccCCCeEEEcCCCCeehh---hHHHHHHH-hcCCCeEE--EchhhHhCHHHHHHHHHHhCCC-
Confidence 234689999999999999 45556666 57999995 9999999999999999999994
Q ss_pred CCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHH
Q 014355 368 ADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDE 408 (426)
Q Consensus 368 ~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde 408 (426)
.+.+.|+++ +.+.+|+|||||+|+ ++++++.+.
T Consensus 343 -----~P~~~hlpl--i~~~~g~KLSKR~g~-~~l~~~~~~ 375 (592)
T 3al0_C 343 -----APVFMHIPL--ILGSDRTPLSKRHGA-TSVEHFRRE 375 (592)
T ss_dssp -----CCBCCEECC--CBCTTSSBCCTTTCS-SBHHHHHHT
T ss_pred -----CCeEEEeee--eeCCCCCcccccCCc-ccHHHHHHC
Confidence 357899954 989999999999997 689999885
No 14
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.91 E-value=1.9e-23 Score=221.91 Aligned_cols=231 Identities=13% Similarity=0.101 Sum_probs=161.0
Q ss_pred CCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHH
Q 014355 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (426)
Q Consensus 125 ~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (426)
...+++.|--.-|+||||+||||+|++++||+|+|+++..||+|....+++|.|.++...+...
T Consensus 15 ~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---------------- 78 (560)
T 3h99_A 15 QVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL---------------- 78 (560)
T ss_dssp --CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH----------------
T ss_pred CCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHh----------------
Confidence 3456677777778888999999999999999999999999999999999999998886543210
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eecc--ccccCcHHH
Q 014355 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGE--SFYNPYIPG 281 (426)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~E--s~~~~~v~~ 281 (426)
+ .+ ++++++.+.+.|++++++|||.+| +..+ ..|.+.+.+
T Consensus 79 ---------g----~~------------------------~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~ 121 (560)
T 3h99_A 79 ---------G----IT------------------------PEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSEL 121 (560)
T ss_dssp ---------T----SC------------------------HHHHHHHHHHHHHHHHHHTTCCCSEEEESSSHHHHHHHHH
T ss_pred ---------C----CC------------------------HHHHHHHHHHHHHHHHHHcCCCCCCceeCCCHHHHHHHHH
Confidence 0 00 134566777899999999999996 3333 366788999
Q ss_pred HHHHHHHCCCEEEeCCeEEEEec-----------------------C---------------------------------
Q 014355 282 VIDELSKQGLVEESQGARVIFIE-----------------------G--------------------------------- 305 (426)
Q Consensus 282 vi~~L~~~g~~~~~dGa~~~~~~-----------------------g--------------------------------- 305 (426)
++++|.++|++|+.++.+|+... |
T Consensus 122 ~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~ 201 (560)
T 3h99_A 122 IYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSE 201 (560)
T ss_dssp HHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTCCBCCGGGCEEEEETTTCCCCEEEEEE
T ss_pred HHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhhhccccCChhhhcCCccccCCCCceEEecc
Confidence 99999999999999888887321 0
Q ss_pred ------------------------------------CCCCeEEEecC---Ccc----------ccccccHHHH--H--HH
Q 014355 306 ------------------------------------VNIPLIIVKSD---GGF----------NYASTDLAAL--W--YR 332 (426)
Q Consensus 306 ------------------------------------~~~d~Vl~ksD---G~~----------tY~t~DiA~~--~--~r 332 (426)
.-.|..|.|.. |.+ +|+...++|. . +.
T Consensus 202 ~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~ 281 (560)
T 3h99_A 202 HFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLC 281 (560)
T ss_dssp EEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHH
T ss_pred eEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCCCCceEEeCcccchhHHHHHHHHh
Confidence 11234444444 432 2222223331 0 11
Q ss_pred --------Hhh-cCCC---eEEEEeeCCccc-cHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCc
Q 014355 333 --------LNE-EKAE---WIIYVTDVGQQL-HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 399 (426)
Q Consensus 333 --------~~~-~~~d---~~i~V~g~~q~~-hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~ 399 (426)
+.. +..| .+++|+|.||.. |.....+++.++|+. .+ ..+. ..|+|+. +|+|||||+||+
T Consensus 282 ~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~~----~p-~~v~--~hg~v~~-~G~KMSKS~GNv 353 (560)
T 3h99_A 282 DKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNFR----KP-SNLF--VHGYVTV-NGAKMSKSRGTF 353 (560)
T ss_dssp HHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTBC----CC-SEEE--EECCEEE-TTEECCTTTTCC
T ss_pred hccCChhhHHHhCcCCCCceeEEEeccccchhHHHHHHHHHHhCCCC----CC-cEEE--EEeEEEe-CCeeccccCCCc
Confidence 110 1233 679999999865 222222577788883 12 2222 3378887 899999999999
Q ss_pred eeHHHHHHHHHHHHHHH
Q 014355 400 VRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 400 v~L~dLlde~~~~a~~~ 416 (426)
|+++|++++....|...
T Consensus 354 v~p~d~i~~~GaDalR~ 370 (560)
T 3h99_A 354 IKASTWLNHFDADSLRY 370 (560)
T ss_dssp CBHHHHHHHSCHHHHHH
T ss_pred CCHHHHHHHcCcHHHHH
Confidence 99999999988777764
No 15
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.90 E-value=2.5e-23 Score=216.19 Aligned_cols=236 Identities=17% Similarity=0.142 Sum_probs=144.4
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCC------eeEEecccCCchhHHHHHHHHHHhhC---CCCC-
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNV------EVLRRNHVGDWGTQFGMLIEYLFEKF---PNSE- 196 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~------~V~~~~yv~D~G~Q~~~l~~~~~~~~---~~~~- 196 (426)
-..|++++++|||||||||||+|++++++.+||. +.|. ++.+.+++++++.||-.-..++...+ |+..
T Consensus 10 ~~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg 87 (481)
T 2o5r_A 10 HHHMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGG 87 (481)
T ss_dssp ---CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBC
T ss_pred cceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCCccccHHHHHHHHHHHHHHcCCCCCCCcccCC
Confidence 4468999999999999999999999999999999 3444 44456788888888865544443222 1111
Q ss_pred ----ccccccHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCC--cee-e
Q 014355 197 ----DANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRV--DLE-E 269 (426)
Q Consensus 197 ----~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi--~fd-~ 269 (426)
++..+.+. +|.+ .+++++ ++|..... .+....++.+++.....|+ .++ +
T Consensus 88 ~~g~y~QS~r~~----~y~~-------------~a~~L~---~~G~aY~c----~ct~eel~~~r~~~~~~g~~~~yd~~ 143 (481)
T 2o5r_A 88 DHGPYRQSERVE----IYRE-------------HAERLV---KEGKAYYV----YAYPEEIEEMREKLLSEGKAPHYSQE 143 (481)
T ss_dssp TTCCCBGGGGHH----HHHH-------------HHHHHH---HTTSEEEE----CCCSTTTHHHHHHHHHTTCCCCBCGG
T ss_pred CCCceeeeccHH----HHHH-------------HHHHHH---HCCCeeEe----cCCHHHHHHHHHHHHhcCCCCCCCCc
Confidence 11111111 1111 111111 11111000 0000112333444556777 343 2
Q ss_pred ecc-ccccCcHHHHHHHHHHCC-------------CEEEe--CCeEEEEecCCCCCeEEEecCCccccccccHHHHHHHH
Q 014355 270 KGE-SFYNPYIPGVIDELSKQG-------------LVEES--QGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRL 333 (426)
Q Consensus 270 ~~E-s~~~~~v~~vi~~L~~~g-------------~~~~~--dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~ 333 (426)
.++ +.. .++..+.+ +.| +.+++ .|+++++.+. -.|+||+|+||+|||. +|..++..
T Consensus 144 ~s~r~l~---~~e~~~~~-~~G~~~~iR~k~~~~~~~~~D~~~G~~~~~~~~-~~D~Vl~RsDG~ptY~---~a~vvDD~ 215 (481)
T 2o5r_A 144 MFEKFDT---PERRREYE-EKGLRPAVFFKMPRKDYVLNDVVKGEVVFKTGA-IGDFVIMRSNGLPTYN---FACVVDDM 215 (481)
T ss_dssp GGTTTCC---HHHHHHHH-HTTCCCEEEECCCSSCEEEEETTTEEEEECTTS-SCBEEEECTTSCBCHH---HHHHHHHH
T ss_pred hhhhcCC---HHHHHHHH-hcCCcceEEEEcCCCceEEEecccceeEecccc-CCCeEEEccCCCcchh---hHHHHHHH
Confidence 112 221 22222222 233 23332 4677765432 2489999999999994 23334444
Q ss_pred hhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHH
Q 014355 334 NEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDE 408 (426)
Q Consensus 334 ~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde 408 (426)
..+++++| +|.||..|++++..++++||+. .+.+.|+++ +.+.+|+|||||+|++ ++++++++
T Consensus 216 -~~githvi--rG~D~~~~t~~q~~l~~aLG~~------~p~~~H~pl--il~~~G~KLSKR~g~~-~l~~~~~~ 278 (481)
T 2o5r_A 216 -LMEITHVI--RGDDHLSNTLRQLALYEAFEKA------PPVFAHVST--ILGPDGKKLSKRHGAT-SVEAFRDM 278 (481)
T ss_dssp -HTTCSEEE--EEGGGHHHHHHHHHHHHHTTCC------CCEEEEECC--EECTTSSBCCGGGSCC-BHHHHHHH
T ss_pred -hCCCCeEE--EChhHHHhHHHHHHHHHHcCCC------CCeEEEEee--EECCCCCcccCcCCcc-cHHHHHHC
Confidence 35788995 9999999999999999999994 257999966 7788999999999987 99999987
No 16
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.90 E-value=5.9e-23 Score=216.40 Aligned_cols=229 Identities=15% Similarity=0.148 Sum_probs=157.9
Q ss_pred CCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHH
Q 014355 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (426)
Q Consensus 125 ~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (426)
+..+++.|--+-|||+|++||||+|+++++|+|+|+++..||+|.+...++|+|..+...+..
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~----------------- 71 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAK----------------- 71 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHH-----------------
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHH-----------------
Confidence 445688999999999999999999999999999999999999999999999988655422110
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eecccc--ccCcHHH
Q 014355 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESF--YNPYIPG 281 (426)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~Es~--~~~~v~~ 281 (426)
.|.+ ++++++.+...|++++++|||.+| +..++. |.+.+.+
T Consensus 72 -------------------------------~g~~-----~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~ 115 (524)
T 2x1l_A 72 -------------------------------EGIP-----AAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKA 115 (524)
T ss_dssp -------------------------------HTSC-----HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHH
T ss_pred -------------------------------cCCC-----HHHHHHHHHHHHHHHHHHcCCcCCCCeecCCHHHHHHHHH
Confidence 0111 245677888999999999999997 545554 7888999
Q ss_pred HHHHHHHCCCEEEeCCeEEEEecC----C-----------------CCCeEEE---------------------------
Q 014355 282 VIDELSKQGLVEESQGARVIFIEG----V-----------------NIPLIIV--------------------------- 313 (426)
Q Consensus 282 vi~~L~~~g~~~~~dGa~~~~~~g----~-----------------~~d~Vl~--------------------------- 313 (426)
++++|.++|++|+.++.+|+.... . +.+...+
T Consensus 116 ~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i 195 (524)
T 2x1l_A 116 IWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFI 195 (524)
T ss_dssp HHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGE
T ss_pred HHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCCeEeeHHHHHHHHHHHHHhCCCee
Confidence 999999999999999998875320 0 0111111
Q ss_pred -----------------------ec---CCcc--------ccc--cccHHHHH---H------HHh-hcCCCeEEEEeeC
Q 014355 314 -----------------------KS---DGGF--------NYA--STDLAALW---Y------RLN-EEKAEWIIYVTDV 347 (426)
Q Consensus 314 -----------------------ks---DG~~--------tY~--t~DiA~~~---~------r~~-~~~~d~~i~V~g~ 347 (426)
|. =|.+ .|. .+.++|.. + .+. -+.+| +++.|.
T Consensus 196 ~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~d--i~~~G~ 273 (524)
T 2x1l_A 196 GPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPAD--LHMIGK 273 (524)
T ss_dssp ESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCS--EEEEEG
T ss_pred CCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHHHcCCCCCchHHHHhhCCCe--EEEEee
Confidence 11 1111 111 11111100 0 000 12344 778888
Q ss_pred CccccHHHHH--HHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHHH
Q 014355 348 GQQLHFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVL 417 (426)
Q Consensus 348 ~q~~hf~~~~--~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~i 417 (426)
||. .|.+++ +.+.++|+. ++...+.| |+|+. +|+|||||+||+|+++|++++....|.+..
T Consensus 274 D~~-~fh~~~~~a~l~~~g~~----~~~~v~~h---G~v~~-~G~KMSKS~GN~v~p~d~i~~~g~DalR~~ 336 (524)
T 2x1l_A 274 DII-RFHTVYWPAFLMSAGLP----LPKRIFAH---GWLLN-RGEKMSKSIGNVVDPVNLVDTFGLDQVRYF 336 (524)
T ss_dssp GGH-HHHHTHHHHHHHHHTCC----CCSCEEEE---CCEEE-CSCSEETTTEESSCHHHHHHHHCHHHHHHH
T ss_pred chh-HhHHHHHHHHHHHCCCC----CCcEEEEC---cEEEe-CCcccCCcCCCCCCHHHHHHHcChHHHHHH
Confidence 886 466655 455667873 23344555 66886 789999999999999999999887776643
No 17
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.86 E-value=3.6e-22 Score=195.64 Aligned_cols=186 Identities=18% Similarity=0.137 Sum_probs=129.7
Q ss_pred cCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHhh
Q 014355 135 SSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSK 214 (426)
Q Consensus 135 ~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~ 214 (426)
-.|+|||+|||||+|+++ .|.|.+.++.+...--|.|.- +.
T Consensus 10 FAPsPtG~LHiG~~rtal-----~n~l~Ar~~~g~~ilRieDtD----------------------~~------------ 50 (298)
T 1nzj_A 10 FAPSPSGELHFGSLIAAL-----GSYLQARARQGRWLVRIEDID----------------------PP------------ 50 (298)
T ss_dssp ECCCTTSCCCHHHHHHHH-----HHHHHHHHTTCEEEEEECCSC----------------------GG------------
T ss_pred ECcCCCCCccHHHHHHHH-----HHHHHHHhcCCeEEEEEecCC----------------------ch------------
Confidence 479999999999999998 455555566677766666731 00
Q ss_pred cccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceee--eccccccCcHHHHHHHHHHCCCE
Q 014355 215 NRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLV 292 (426)
Q Consensus 215 ~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~--~~Es~~~~~v~~vi~~L~~~g~~ 292 (426)
+ . +..+.+.+.++|+.||+.+|. ...|.+.+...+++++|.++|++
T Consensus 51 -R--~-----------------------------~~~~~~~I~~dL~~LGl~~D~~~~~qSer~~~y~~~~~~L~~~G~a 98 (298)
T 1nzj_A 51 -R--E-----------------------------VPGAAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLS 98 (298)
T ss_dssp -G--S-----------------------------CTTHHHHHHHHHHHTTCCCSSCCEEGGGCHHHHHHHHHHHHHTTCE
T ss_pred -h--h-----------------------------HHHHHHHHHHHHHHcCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCc
Confidence 0 0 011235777899999999862 33455667788999999999999
Q ss_pred EEe--------------------------CCeEEEEecC-------------------CCCCeEEEecCCccccccccHH
Q 014355 293 EES--------------------------QGARVIFIEG-------------------VNIPLIIVKSDGGFNYASTDLA 327 (426)
Q Consensus 293 ~~~--------------------------dGa~~~~~~g-------------------~~~d~Vl~ksDG~~tY~t~DiA 327 (426)
|.. ..+++++++. +..|+||+|+||.|||. +|
T Consensus 99 Y~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL~R~dG~PtY~---la 175 (298)
T 1nzj_A 99 YYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYN---LA 175 (298)
T ss_dssp EEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEECTTSCBCHH---HH
T ss_pred ccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEEECCCCCEeee---ee
Confidence 973 1367765541 23589999999999996 89
Q ss_pred HHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHH
Q 014355 328 ALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLL 406 (426)
Q Consensus 328 ~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLl 406 (426)
+++++. ..|++++|. |.||..+-++...+.++||+. .+.+.|+++ +.+.+|+|||||.|++ +++++-
T Consensus 176 ~vvdD~-~~giThvIr--G~D~l~~t~~q~~l~~alG~~------~p~~~H~pl--l~~~~g~KLSKR~g~~-~v~~~~ 242 (298)
T 1nzj_A 176 VVVDDH-FQGVTEIVR--GADLIEPTVRQISLYQLFGWK------VPDYIHLPL--ALNPQGAKLSKQNHAP-ALPKGD 242 (298)
T ss_dssp HHHHHH-HTTCCEEEE--EGGGHHHHHHHHHHHHHHTCC------CCEEEEECB--CCC--------------CCCSSC
T ss_pred eeeEHH-hcCCCEEEe--CccccccHHHHHHHHHHcCCC------CCeEEEeee--eECCCCCcccccCCcc-ChhcCC
Confidence 999887 579999985 999988888888888999994 367899954 8888999999999976 666553
No 18
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.86 E-value=2.2e-23 Score=219.67 Aligned_cols=229 Identities=11% Similarity=0.000 Sum_probs=141.0
Q ss_pred CCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCch--hHH-HHHHHHHHhhCCCCCccccccHHHHHHHHHH
Q 014355 136 SPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWG--TQF-GMLIEYLFEKFPNSEDANETAIGELQEFYRR 212 (426)
Q Consensus 136 SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G--~Q~-~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~ 212 (426)
+|||||++||||+|+++++|+++|+|++.||+|..+++++|+| +++ ..+..+. +. +.+.++
T Consensus 27 gPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~-~~------~~G~~~--------- 90 (523)
T 1irx_A 27 GITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEW-KD------YLGMPI--------- 90 (523)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGG-GG------GTTSBG---------
T ss_pred CCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHH-HH------HcCCCc---------
Confidence 5999999999999999999999999999999999999999998 443 0000000 00 000000
Q ss_pred hhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecccc-ccC-cHHHHHHHHHHCC
Q 014355 213 SKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESF-YNP-YIPGVIDELSKQG 290 (426)
Q Consensus 213 ~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~Es~-~~~-~v~~vi~~L~~~g 290 (426)
.+-.||. ..|+.+++.+.+.|.++|+.|||.+|.+++|. |.+ .+.+++++|.++|
T Consensus 91 ---------------------~~~p~p~--~~~~~~~~~~~~~~~~~l~~Lgi~~D~~~~se~~~~g~~~~~i~~L~~~G 147 (523)
T 1irx_A 91 ---------------------SEVPDPW--GCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEKR 147 (523)
T ss_dssp ---------------------GGSCCTT--SSSSSHHHHHHHHHHHHHHTTTCCCEEEEHHHHHHTTTTHHHHHHHHHTH
T ss_pred ---------------------ccCCcch--hhHHHHHHHHHHHHHHHHHHcCCCceEEechhhccchHHHHHHHHHHHch
Confidence 0111222 13566788889999999999999998657776 766 8999999999999
Q ss_pred ----------------CEEEeCCeEEEEec--CCC-------------CCeEEEecCCcccccccc-----HHHHHHH-H
Q 014355 291 ----------------LVEESQGARVIFIE--GVN-------------IPLIIVKSDGGFNYASTD-----LAALWYR-L 333 (426)
Q Consensus 291 ----------------~~~~~dGa~~~~~~--g~~-------------~d~Vl~ksDG~~tY~t~D-----iA~~~~r-~ 333 (426)
.+|..+ |+..+ +.. .+.-...++|.+++.... +.++.+. +
T Consensus 148 ~~iy~~~~~~~g~~~~~~y~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~g~~~~~d~~~G~g~~~w~~d~~~ 224 (523)
T 1irx_A 148 DKIMEILNKYREIAKQPPLPEN---WWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPM 224 (523)
T ss_dssp HHHHHHHHHHHHHTTCCCCCTT---CCSEEEECTTTCCEECEEEECSSSCEEECCSSSCCCEECTTSSCEEECHHHHHHH
T ss_pred HHHHHHHHhhccccccccccCC---ceeccccchhhCCcccccccCCCCceeeeecCCCccccCCcCCCCCCCCCcchHh
Confidence 666542 43221 110 111111134555443221 1122221 0
Q ss_pred hhcCCCeEEEEeeCCccc------cHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC-CCccccccCCCceeHHHHH
Q 014355 334 NEEKAEWIIYVTDVGQQL------HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DGKRLRTRFSEVVRLVDLL 406 (426)
Q Consensus 334 ~~~~~d~~i~V~g~~q~~------hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~-~g~kmSkR~G~~v~L~dLl 406 (426)
..+.+...|++.|.||.. |..++. .+++|+. .+.+.|+ ++|.++ +|+|||||+||+|+++|++
T Consensus 225 ~~~~l~~~vd~~G~Dh~~~h~s~~~~~~i~--~~alG~~------~p~~~h~--~~i~~~g~g~KmSKs~Gn~i~~~~~~ 294 (523)
T 1irx_A 225 RWSHFGVDFEPAGKDHLVAGSSYDTGKEII--KEVYGKE------APLSLMY--EFVGIKGQKGKMSGSKGNVILLSDLY 294 (523)
T ss_dssp HHHHSCCCBCCEEHHHHSTTSHHHHHHHHH--HHHHCCC------CCBCCEE--CCEEESCC---------CCCCHHHHH
T ss_pred hHHHcCCCCcCCCcCccCCCcchhhHHHHH--HHHhCCC------CCeEEEE--EEEEeCCCCCCCCCcCCCCCCHHHHH
Confidence 112233456788999887 444442 2688984 2368888 668887 7999999999999999999
Q ss_pred HHHHHHHHHH
Q 014355 407 DEAKNRSKAV 416 (426)
Q Consensus 407 de~~~~a~~~ 416 (426)
++....|...
T Consensus 295 ~~~~pdalR~ 304 (523)
T 1irx_A 295 EVLEPGLVRF 304 (523)
T ss_dssp TTSCHHHHHH
T ss_pred HHcCHHHHHH
Confidence 9866655543
No 19
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=99.86 E-value=1.8e-21 Score=163.24 Aligned_cols=104 Identities=26% Similarity=0.514 Sum_probs=88.4
Q ss_pred cchHhHHHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCccccchhhHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCC
Q 014355 6 ENTGNVKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSE 84 (426)
Q Consensus 6 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~~GD~~t~~a~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~ 84 (426)
+.| ++++.+.+.|.+++....- ..+..+.+++| +++||||+||+||.|||.+| ++|++||++|+++|+.++
T Consensus 2 ~~M-~i~~~l~~~i~~al~~~~~-~~~~~~~ve~p~~~~~GD~a~n~a~~lak~~~------~~P~~iA~~i~~~l~~~~ 73 (109)
T 3gdz_A 2 NAM-NIQALLSEKVSQALIAAGA-PADCEPQVRQSAKVQFGDYQANGVMAVAKKLG------MAPRQLAEQVLSHLDLNG 73 (109)
T ss_dssp CCC-CHHHHHHHHHHHHHHHTTC-CTTCCCCEEECSSGGGCSEEECCHHHHHHHTT------SCHHHHHHHHHHHCCCTT
T ss_pred Ccc-CHHHHHHHHHHHHHHHcCC-CccCCceeecCCCCCcceeecHHHHHHHHHhC------CCHHHHHHHHHHhcCcCC
Confidence 456 7899999999999987521 11234556665 67999999999999999999 999999999999998778
Q ss_pred ceeeeEEecCcEEEEeeCHHHHHHHHHHHHHcC
Q 014355 85 MIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDG 117 (426)
Q Consensus 85 ~i~~v~vagpGfiNf~l~~~~~~~~l~~~l~~~ 117 (426)
+|++++++|||||||+|+++++.+.+..++.+.
T Consensus 74 ~i~~vevagpGFINf~l~~~~~~~~l~~il~~~ 106 (109)
T 3gdz_A 74 IANKVEIAGPGFINIFLDPAFLADNVNRALQSE 106 (109)
T ss_dssp TEEEEEEETTTEEEEEECHHHHHHHHHHHHTTC
T ss_pred cEeEEEEeCCCeEEEEECHHHHHHHHHHHHhcc
Confidence 899999999999999999999999999988553
No 20
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.84 E-value=2e-20 Score=194.39 Aligned_cols=194 Identities=18% Similarity=0.174 Sum_probs=145.6
Q ss_pred ceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHH
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (426)
++|.+=|. |.|||+|||||+|++++--..||- +.....--|.|.- .
T Consensus 24 ~~v~~RFA-PsPtG~LHiG~~rtal~n~l~Ar~-----~~G~filRieDtD----------------------~------ 69 (488)
T 3afh_A 24 ELVRVRFA-PSPTGHLHVGGARTALFNWMFARK-----EGGKFILRIEDTD----------------------T------ 69 (488)
T ss_dssp -CCEEEEC-CCCSSSCBHHHHHHHHHHHHHHHH-----HTCEEEECBCCCC----------------------T------
T ss_pred CCceEEEC-CCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEEeeCC----------------------c------
Confidence 34666665 999999999999999765555553 4444555555530 0
Q ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeee----------ccccccC
Q 014355 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK----------GESFYNP 277 (426)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~----------~Es~~~~ 277 (426)
.+ . +..+.+.+.++|+.||+.+|.. .-|.+.+
T Consensus 70 -------~R--~-----------------------------~~~~~~~I~~dL~wlGl~wDe~~~~gG~~gp~~QSer~~ 111 (488)
T 3afh_A 70 -------ER--S-----------------------------SREYEQQILESLRWCGLDWDEGPDIGGDFGPYRQSERLE 111 (488)
T ss_dssp -------TT--C-----------------------------CHHHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHH
T ss_pred -------cc--c-----------------------------cHHHHHHHHHHHHHcCCCCCcCCCCCCCCCCeeeeCCHH
Confidence 00 0 1223356778999999998652 2344445
Q ss_pred cHHHHHHHHHHCCCEEE-----------------------eCC---eEEEEec------------------CCCCCeEEE
Q 014355 278 YIPGVIDELSKQGLVEE-----------------------SQG---ARVIFIE------------------GVNIPLIIV 313 (426)
Q Consensus 278 ~v~~vi~~L~~~g~~~~-----------------------~dG---a~~~~~~------------------g~~~d~Vl~ 313 (426)
...+++++|.++|.+|. .+| +++++++ ++..|+||+
T Consensus 112 ~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~ 191 (488)
T 3afh_A 112 IYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIM 191 (488)
T ss_dssp HHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEEEEGGGSCCEEEE
T ss_pred HHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEeecCCCCCCeEEE
Confidence 67899999999999996 245 5666654 234689999
Q ss_pred ecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcccc
Q 014355 314 KSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLR 393 (426)
Q Consensus 314 ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmS 393 (426)
|+||.|||. +|..++.. ..|++++| .|.||..+-+++..+.++||+. .+.+.|+++ |.+.+|+|||
T Consensus 192 R~DG~PtY~---lA~vVDD~-~mgIThVi--RG~D~l~~tp~q~~l~~aLG~~------~P~f~H~pl--i~~~~g~KLS 257 (488)
T 3afh_A 192 KSNGFPTYN---FAVVVDDH-LMRISHVF--RGEDHLSNTPKQLMIYEAFGWE------APVFMHIPL--ILGSDRTPLS 257 (488)
T ss_dssp CTTSCBCHH---HHHHHHHH-HTTCSEEE--EEGGGGGGHHHHHHHHHHHTCC------CCEEEEECC--EECTTSSBCC
T ss_pred ecCCCeehh---hHHHHHHH-hcCCCEEE--EchhhhhCHHHHHHHHHHcCCC------CCeEEEEee--eeCCCCCccc
Confidence 999999999 56666776 57999995 9999999999999999999994 368999955 9999999999
Q ss_pred ccCCCceeHHHHHHH
Q 014355 394 TRFSEVVRLVDLLDE 408 (426)
Q Consensus 394 kR~G~~v~L~dLlde 408 (426)
||+|+ ++++++.++
T Consensus 258 KR~g~-~~l~~~r~~ 271 (488)
T 3afh_A 258 KRHGA-TSVEHFRRE 271 (488)
T ss_dssp TTTSC-CBHHHHHHH
T ss_pred CcCCc-ccHHHHHHC
Confidence 99997 689999885
No 21
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.80 E-value=3.8e-19 Score=193.74 Aligned_cols=122 Identities=14% Similarity=0.187 Sum_probs=100.4
Q ss_pred ceEEEEecCCCcCCCccchhHHH-HHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHH
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRS-TIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRs-aiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (426)
+++.|....|||+|++||||+|+ ++++|+++|.+|..||+|.+....+++|..+..-+...
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~------------------ 63 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE------------------ 63 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH------------------
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHc------------------
Confidence 57899999999999999999999 99999999999999999999999999998766433100
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc---ccccCcHHHHH
Q 014355 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE---SFYNPYIPGVI 283 (426)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E---s~~~~~v~~vi 283 (426)
|- -.+++++.+.+.|++++++|||+||++.. ..|...+++++
T Consensus 64 ------------------------------G~-----~p~e~~~~~~~~~~~~~~~lgis~D~~~rT~d~~~~~~v~~~f 108 (722)
T 1rqg_A 64 ------------------------------GR-----SPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFF 108 (722)
T ss_dssp ------------------------------TC-----CHHHHHHHHHHHHHHHHHHHTCCCSEEEETTSHHHHHHHHHHH
T ss_pred ------------------------------CC-----CHHHHHHHHHHHHHHHHHHhCCCCCCCeeCCCHHHHHHHHHHH
Confidence 10 02456788889999999999999987543 34677899999
Q ss_pred HHHHHCCCEEEeCCeEEEE
Q 014355 284 DELSKQGLVEESQGARVIF 302 (426)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~ 302 (426)
.+|.++|++|+.+..+++.
T Consensus 109 ~~L~~kG~iY~~~~~v~y~ 127 (722)
T 1rqg_A 109 LKAYENGHLVKKVTKQAYC 127 (722)
T ss_dssp HHHHHTTCEEEEEEEEEEB
T ss_pred HHHHHCCCEEecceeeeec
Confidence 9999999999876555543
No 22
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.75 E-value=1.8e-17 Score=175.12 Aligned_cols=124 Identities=14% Similarity=0.132 Sum_probs=99.5
Q ss_pred CCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHH
Q 014355 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (426)
Q Consensus 125 ~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (426)
...++..|.-.-|+|||++||||+|+.++.|+++|.+|..||+|.....++|.|..+..-+.-
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k----------------- 68 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQ----------------- 68 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHH-----------------
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHH-----------------
Confidence 346778899889999999999999999999999999999999999999999999776532210
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeccc---cccCcHHH
Q 014355 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES---FYNPYIPG 281 (426)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~Es---~~~~~v~~ 281 (426)
.+ . + .+++++.+.+.|++++++|||++|++.++ .|...+.+
T Consensus 69 --------~g----~------------------~------~~e~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~ 112 (542)
T 3u1f_A 69 --------KQ----V------------------S------PYDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKE 112 (542)
T ss_dssp --------TT----S------------------C------HHHHHHHHHHHHHHHHHHHTCCCSEEEETTCHHHHHHHHH
T ss_pred --------cC----C------------------C------HHHHHHHHHHHHHHHHHHhCCccCcCccCCCHHHHHHHHH
Confidence 00 0 1 13456777788999999999999987543 45678999
Q ss_pred HHHHHHHCCCEEEeCCeEEE
Q 014355 282 VIDELSKQGLVEESQGARVI 301 (426)
Q Consensus 282 vi~~L~~~g~~~~~dGa~~~ 301 (426)
++.+|.++|++|+....+++
T Consensus 113 ~f~~L~~~G~iy~~~~~v~~ 132 (542)
T 3u1f_A 113 LWTKLEQKGDIYLGRYEGWY 132 (542)
T ss_dssp HHHHHHHTTCEEEEEEEEEE
T ss_pred HHHHHhhcCcEEecceeEEe
Confidence 99999999999987655544
No 23
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.74 E-value=3.5e-17 Score=169.41 Aligned_cols=195 Identities=18% Similarity=0.231 Sum_probs=142.9
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHH
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (426)
..+|.+=|. |.|||+|||||+|++++....|| ++....+--+.|.- .
T Consensus 23 ~~~v~~RFA-PSPTG~lHiG~~rtal~n~l~Ar-----~~~G~filRieDtD----------------------~----- 69 (490)
T 4g6z_A 23 TRPVRTRFA-PSPTGFIHLGNIRSALYPWAFAR-----KMKGTFVLRIEDTD----------------------V----- 69 (490)
T ss_dssp -CCCEEEEC-CCCCSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCC----------------------G-----
T ss_pred CCCceEEeC-CCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEeCCCC----------------------c-----
Confidence 345777776 99999999999999988666665 34444444445520 0
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceee--eccccccCcHHHHHH
Q 014355 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVID 284 (426)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~--~~Es~~~~~v~~vi~ 284 (426)
.+ .+..+.+.+.++++.||+..|. +..|.+.+...++++
T Consensus 70 --------~R-------------------------------~~~~~~~~i~~dl~wlGl~~d~~~~~qS~r~~~y~~~~~ 110 (490)
T 4g6z_A 70 --------ER-------------------------------SSQEAVDAILEGMAWLGLDYDEGPYYQMQRMDRYREVLA 110 (490)
T ss_dssp --------GG-------------------------------CCHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHH
T ss_pred --------cc-------------------------------ccHHHHHHHHHHHHHcCCCCCCCCcccccCHHHHHHHHH
Confidence 00 0122335677799999999863 334666667789999
Q ss_pred HHHHCCCEEEe----------------CC------------------------eEEEEec--------------C-----
Q 014355 285 ELSKQGLVEES----------------QG------------------------ARVIFIE--------------G----- 305 (426)
Q Consensus 285 ~L~~~g~~~~~----------------dG------------------------a~~~~~~--------------g----- 305 (426)
+|.++|++|.. .| ..++++. |
T Consensus 111 ~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~~~~~D~i~G~~~~~ 190 (490)
T 4g6z_A 111 QMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGTVAWDDAVKGRVEIS 190 (490)
T ss_dssp HHHHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSEEEEEETTTEEEEEE
T ss_pred HHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEecCCCCcEEEEEeeeeeeeec
Confidence 99999998831 00 0122221 1
Q ss_pred --CCCCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEE
Q 014355 306 --VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGL 383 (426)
Q Consensus 306 --~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~ 383 (426)
.-.|+||.|+||.|||. +|..++.. ..|++++| .|.||...-++...+.++|||. .+.+.|+++
T Consensus 191 ~~~~~D~Vl~R~DG~ptY~---lA~vVDD~-~mgIThVi--RG~D~l~~tprq~~l~~aLG~~------~P~f~HlpL-- 256 (490)
T 4g6z_A 191 NEELDDLVVARPDGTPMYN---FCVVVDDL-DMGITHVI--RGDDHVNNTPRQINILRALGGE------VPVYAHLPT-- 256 (490)
T ss_dssp GGGCCCCEEECTTSCBCHH---HHHHHHHH-HTTCCEEE--EEGGGGGGHHHHHHHHHHTTCC------CCEEEEECC--
T ss_pred cccCCCeEEEeeCCCccch---hHHHHHHH-hcCCCEEE--eccccccChHHHHHHHHHcCCC------CCeEEEecc--
Confidence 12589999999999999 68888887 57999996 7999999988888999999995 368999955
Q ss_pred EEcCCCccccccCCCceeHHHHHHH
Q 014355 384 VLGEDGKRLRTRFSEVVRLVDLLDE 408 (426)
Q Consensus 384 v~~~~g~kmSkR~G~~v~L~dLlde 408 (426)
|.+++|+|||||.| .+++.++.++
T Consensus 257 i~~~~g~KLSKR~g-~~sl~~~r~~ 280 (490)
T 4g6z_A 257 VLNEQGEKMSKRHG-AMSVMGYRDA 280 (490)
T ss_dssp EECTTSSBCCTTTT-CCBHHHHHHT
T ss_pred eeCCCCCcccCCCC-CcCHHHHHHC
Confidence 99999999999999 5899998876
No 24
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.72 E-value=5e-17 Score=169.10 Aligned_cols=187 Identities=18% Similarity=0.144 Sum_probs=139.1
Q ss_pred CCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHhhc
Q 014355 136 SPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKN 215 (426)
Q Consensus 136 SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~ 215 (426)
.|.|||+|||||+|++++ |.|.+.+|.+...--|.|.- + .
T Consensus 7 APSPtG~lHiG~artal~-----n~l~Ar~~~G~filRieDtD--------------~--~------------------- 46 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVF-----NWLYARHRGGKFILRIEDTD--------------R--E------------------- 46 (492)
T ss_dssp CCCTTSCCBHHHHHHHHH-----HHHHHHHTTCEEEEEECCCS--------------S--S-------------------
T ss_pred CCCCCCCccHHHHHHHHH-----HHHHHHhcCCeEEEEEeeCC--------------c--c-------------------
Confidence 589999999999999987 66666678888888788841 0 0
Q ss_pred ccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceee--eccccccCcHHHHHHHHHHCCCEE
Q 014355 216 RFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLVE 293 (426)
Q Consensus 216 ~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~--~~Es~~~~~v~~vi~~L~~~g~~~ 293 (426)
+ .. ..+.+.+.++|+.||+..|. +.-|.+.+...+++++|.++|.+|
T Consensus 47 R--~~-----------------------------~~~~~~i~~dL~wLGl~wde~~~~QS~r~~~y~~~~~~Li~~G~AY 95 (492)
T 2cfo_A 47 R--SR-----------------------------PEYTENILEGLQWLGLTWDEGPYFQSDRLDLYRQAIQTLLDKGLAY 95 (492)
T ss_dssp S--CC-----------------------------HHHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSEE
T ss_pred c--cc-----------------------------hHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHHHHHHHCCCce
Confidence 0 00 11234666788888888752 334555566778888888888888
Q ss_pred Ee-----------------------C-----------------Ce-EEEEec--------------C-------CC-CCe
Q 014355 294 ES-----------------------Q-----------------GA-RVIFIE--------------G-------VN-IPL 310 (426)
Q Consensus 294 ~~-----------------------d-----------------Ga-~~~~~~--------------g-------~~-~d~ 310 (426)
.. + |. .++++. | .- .|+
T Consensus 96 ~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D~ 175 (492)
T 2cfo_A 96 YCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGDM 175 (492)
T ss_dssp EECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEETTTEEEEEEGGGGCSSE
T ss_pred EecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEecceeeeeecccccCCCe
Confidence 31 1 21 122221 0 12 589
Q ss_pred EEEecC-----CccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEE
Q 014355 311 IIVKSD-----GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVL 385 (426)
Q Consensus 311 Vl~ksD-----G~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~ 385 (426)
||+|+| |.|||. +|..++.. ..|.+++| .|.||..+-++...+.++||+. .+.+.|++ +|.
T Consensus 176 Vl~R~d~~p~~G~PtY~---la~vvDD~-~~gIthvi--RG~D~~~~t~~q~~l~~alg~~------~P~~~H~p--lil 241 (492)
T 2cfo_A 176 VIARAAPRGEIGYPLYN---LVVVVDDI-AMGITDVI--RGEDHIGNTPKQILLYEALGAT------PPNFAHTP--LIL 241 (492)
T ss_dssp EEECSCCTTSCCCBCHH---HHHHHHHH-HTTCSEEE--EEGGGTTHHHHHHHHHHHTTCC------CCEEEEEC--CEE
T ss_pred EEEEecCCCCCCceeeh---hhhhhhhh-cCCCCeEE--EchhhhhCHHHHHHHHHHcCCC------CceEEEee--eEE
Confidence 999999 999998 67778877 57999994 9999999988888899999994 36899995 599
Q ss_pred cCCCccccccCCCceeHHHHHHH
Q 014355 386 GEDGKRLRTRFSEVVRLVDLLDE 408 (426)
Q Consensus 386 ~~~g~kmSkR~G~~v~L~dLlde 408 (426)
+.+|+|||||.|++ +++++.++
T Consensus 242 ~~~g~KLSKr~g~~-~l~~~r~~ 263 (492)
T 2cfo_A 242 NSTGQKLSKRDGVT-SISDFRAM 263 (492)
T ss_dssp CSSSSBCCTTSSCC-BHHHHHHT
T ss_pred CCCCCEecccCCcc-cHHHHHHC
Confidence 99999999999976 89888875
No 25
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.70 E-value=9.8e-17 Score=165.97 Aligned_cols=86 Identities=20% Similarity=0.178 Sum_probs=74.7
Q ss_pred CCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC
Q 014355 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (426)
Q Consensus 308 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~ 387 (426)
.|+||+|+||.|||. +|..++.. ..|++++ |.|.||..+-++...+.++||+. .+.+.|+ .++.+.
T Consensus 174 ~D~Vl~R~dg~PtY~---~a~vvDD~-~~githv--irG~D~~~~t~~q~~l~~alg~~------~p~~~h~--~li~~~ 239 (468)
T 1j09_A 174 PDVVLLKSDGYPTYH---LANVVDDH-LMGVTDV--IRAEEWLVSTPIHVLLYRAFGWE------APRFYHM--PLLRNP 239 (468)
T ss_dssp CCCEEECTTSCBCHH---HHHHHHHH-HTTCCEE--EEEGGGGGGHHHHHHHHHHHTCC------CCEEEEE--CCCBCT
T ss_pred CCeEEEecCCCeeeh---hHHHHHHH-HCCCCeE--EEChhhhhhHHHHHHHHHHcCCC------CCeEEEe--eeeeCC
Confidence 589999999999999 56667776 5799999 68999999999999999999994 2578898 458899
Q ss_pred CCccccccCCCceeHHHHHHH
Q 014355 388 DGKRLRTRFSEVVRLVDLLDE 408 (426)
Q Consensus 388 ~g~kmSkR~G~~v~L~dLlde 408 (426)
+|+|||||+|+. +++++.++
T Consensus 240 ~g~klSKR~g~~-~l~~~~~~ 259 (468)
T 1j09_A 240 DKTKISKRKSHT-SLDWYKAE 259 (468)
T ss_dssp TSCBCCTTTSCC-BHHHHHHT
T ss_pred CCCccccccchh-hHHHHHHC
Confidence 999999999987 89998875
No 26
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.68 E-value=4.6e-16 Score=161.75 Aligned_cols=86 Identities=19% Similarity=0.153 Sum_probs=75.7
Q ss_pred CCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHc-----CCCCCCCCCCCcEEEEEeE
Q 014355 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRA-----GWLSADDSTYPKASHVGFG 382 (426)
Q Consensus 308 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~l-----g~~~~~~~~~~~~~Hv~~g 382 (426)
.|+||+|+||.|||. +|..++.. ..|++++| .|.||..+-++...+.++| |+. .+.+.|+++
T Consensus 183 ~D~Vi~R~Dg~ptY~---lA~vVDD~-~mgithvi--RG~D~~~~t~~q~~l~~aL~~~g~g~~------~P~~~h~pl- 249 (498)
T 2ja2_A 183 PDFALTRASGDPLYT---LVNPCDDA-LMKITHVL--RGEDLLPSTPRQLALHQALIRIGVAER------IPKFAHLPT- 249 (498)
T ss_dssp CCCBSBCTTSCBCHH---HHHHHHHH-HTTCCEEE--EEGGGGGGHHHHHHHHHHHHHTTSCCC------CCEEEEECC-
T ss_pred CcceeEccCCCcchh---hHHHHHhh-hcCCCEEE--EChhhhhccHHHHHHHHHHHhhcCCCC------CCeEEEeee-
Confidence 588999999999999 67778877 57999995 9999999999998999999 984 368999955
Q ss_pred EEEcCCCccccccCCCceeHHHHHHH
Q 014355 383 LVLGEDGKRLRTRFSEVVRLVDLLDE 408 (426)
Q Consensus 383 ~v~~~~g~kmSkR~G~~v~L~dLlde 408 (426)
+.+.+|+|||||+|+ ++++++.++
T Consensus 250 -il~~~g~KLSKR~g~-~~l~~~r~~ 273 (498)
T 2ja2_A 250 -VLGEGTKKLSKRDPQ-SNLFAHRDR 273 (498)
T ss_dssp -EECSSSSBCCTTSGG-GBHHHHHHH
T ss_pred -eECCCCCcccccCCc-ccHHHHHhC
Confidence 988999999999996 689999885
No 27
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=99.67 E-value=1.8e-15 Score=167.22 Aligned_cols=134 Identities=19% Similarity=0.198 Sum_probs=101.3
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
++++..|....|||||+|||||+++.+++|+++|..|..||+|.+....+.+|..+...+. +.....+ ...
T Consensus 32 ~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve---k~l~~~g-~~~----- 102 (862)
T 1gax_A 32 GKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVE---RLLLKEG-KTR----- 102 (862)
T ss_dssp CSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHH---TTTTTTT-SCC-----
T ss_pred CCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHH---HHHHHcC-CCh-----
Confidence 4568999999999999999999999999999999999999999999999999987664332 1111000 000
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-----s~~~~~v~ 280 (426)
..+ |-++.++..+++++.+...+++.+++||+.+||..| ..|...+.
T Consensus 103 ---------~~~-------------------~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~ 154 (862)
T 1gax_A 103 ---------HDL-------------------GREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVR 154 (862)
T ss_dssp ---------SCC-------------------CTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHH
T ss_pred ---------HHc-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHH
Confidence 001 112223344556777889999999999999998654 23556799
Q ss_pred HHHHHHHHCCCEEEeC
Q 014355 281 GVIDELSKQGLVEESQ 296 (426)
Q Consensus 281 ~vi~~L~~~g~~~~~d 296 (426)
+++.+|.++|++|+..
T Consensus 155 ~~F~~L~~kGliYrg~ 170 (862)
T 1gax_A 155 YAFSRYYHEGLAYRAP 170 (862)
T ss_dssp HHHHHHHTTSSEEEEC
T ss_pred HHHHHHHHCCCEEecc
Confidence 9999999999999854
No 28
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.62 E-value=1.2e-15 Score=168.49 Aligned_cols=146 Identities=17% Similarity=0.176 Sum_probs=107.4
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHH
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (426)
.++++|++++|||+|+|||||+||+++||+++|+++..||+|.+..+.+++|+++...+..+.. + ++...
T Consensus 33 ~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~--~------~~~~~-- 102 (810)
T 1wkb_A 33 EKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKN--R------DPKTI-- 102 (810)
T ss_dssp GGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHT--T------CHHHH--
T ss_pred CCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcc--c------CchHH--
Confidence 5689999999999999999999999999999999999999999999999999999877654311 0 11110
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec-----c--ccccCcH
Q 014355 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----E--SFYNPYI 279 (426)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~-----E--s~~~~~v 279 (426)
+.+.+ .+.-..+ .+.+. ...+++++.+.+.+++++++|||.+||.. + ..|...+
T Consensus 103 -~~~~~---~~g~~~~-------~~~~~--------~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v 163 (810)
T 1wkb_A 103 -WIYRD---VYKVPEE-------ILWTF--------EDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFI 163 (810)
T ss_dssp -HHHHH---TSCCCHH-------HHHGG--------GSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHH
T ss_pred -HHHHH---HhCCCHH-------HHHHH--------HHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHH
Confidence 11111 0111000 00000 11245578889999999999999999743 4 4566778
Q ss_pred HHHHHHHHHCCCEEEeCCeEEE
Q 014355 280 PGVIDELSKQGLVEESQGARVI 301 (426)
Q Consensus 280 ~~vi~~L~~~g~~~~~dGa~~~ 301 (426)
.+++.+|.++|++|+.+..+++
T Consensus 164 ~~~f~~L~~~Gliy~~~~~v~~ 185 (810)
T 1wkb_A 164 EWQFWKLKEKGYIVKGAHRVRW 185 (810)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHHHHHHHHCCCEEECCeeeec
Confidence 9999999999999987665554
No 29
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=99.61 E-value=6.6e-15 Score=154.28 Aligned_cols=86 Identities=23% Similarity=0.286 Sum_probs=75.3
Q ss_pred CCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC
Q 014355 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (426)
Q Consensus 308 ~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~ 387 (426)
.|+||.|+||.|||. +|..++.. ..|.+++| .|.||-..-++...+.++|||. .+.+.|++. |.++
T Consensus 204 ~D~vi~r~dg~PtY~---fA~vVDD~-~mgITHVi--RG~D~l~sTp~q~~l~~alg~~------~P~y~H~pl--i~~~ 269 (512)
T 4gri_A 204 PDPVILKSDGLPTYH---LANVVDDY-LMKITHVL--RAQEWVSSGPLHVLLYKAFKWK------PPIYCHLPM--VMGN 269 (512)
T ss_dssp SSCEEECTTSCBCHH---HHHHHHHH-HTTCSEEE--EEGGGGGGHHHHHHHHHHHTCC------CCEEEEECC--CBCT
T ss_pred CceEEEecCCccccc---ccceeccc-ccCCceec--cccccccccHHHHHHHHHcCCC------CCeEEecch--hccc
Confidence 478999999999996 78888887 57999996 9999988888888899999995 478999954 9999
Q ss_pred CCccccccCCCceeHHHHHHH
Q 014355 388 DGKRLRTRFSEVVRLVDLLDE 408 (426)
Q Consensus 388 ~g~kmSkR~G~~v~L~dLlde 408 (426)
+|+|||||.| ..+++++.++
T Consensus 270 ~g~kLSKR~~-~~~v~~~~~~ 289 (512)
T 4gri_A 270 DGQKLSKRHG-STALRQFIED 289 (512)
T ss_dssp TSSBCCTTTS-CCBHHHHHHH
T ss_pred cccccCcccc-cccHHHHHHc
Confidence 9999999999 6788888876
No 30
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.52 E-value=1.7e-14 Score=150.67 Aligned_cols=194 Identities=14% Similarity=0.068 Sum_probs=126.2
Q ss_pred ceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHH
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (426)
++|+. =-.|+|||+|||||+|++++ |.+.+.+|.+...--++|.- +.
T Consensus 95 g~v~t-RFaPsPtG~LHIGhaRtal~-----n~l~Ar~~~G~~iLRieDtD----------------------~~----- 141 (553)
T 3aii_A 95 GEVVL-RFAPNPSGPLHIGHARAAIL-----NHEYARKYDGRLILRIEDTD----------------------PR----- 141 (553)
T ss_dssp SCCEE-EECCCSSSSCBHHHHHHHHH-----HHHHHHHTTCEEEEEECCCC----------------------GG-----
T ss_pred CceEE-EeCCCCCCCccHHHHHHHHH-----HHHHHHHcCCEEEEEECcCC----------------------cc-----
Confidence 44544 44799999999999999987 45555578888887788841 00
Q ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceee-eccccccCcHHHHHHHH
Q 014355 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDEL 286 (426)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~-~~Es~~~~~v~~vi~~L 286 (426)
+ .. ..+.+.|.++++.||+..|. ..-|.|.+...+++++|
T Consensus 142 --------R--~~-----------------------------~e~~~~I~edL~wLGl~wd~~~~qSdr~~~y~~~~~~L 182 (553)
T 3aii_A 142 --------R--VD-----------------------------PEAYDMIPADLEWLGVEWDETVIQSDRMETYYEYTEKL 182 (553)
T ss_dssp --------G--CC-----------------------------TTHHHHHHHHHHHHTCCCSEEEEGGGGHHHHHHHHHHH
T ss_pred --------c--cc-----------------------------HHHHHHHHHHHHHcCCCCCCCcccccCHHHHHHHHHHH
Confidence 0 00 11235667788999998752 23466667778888999
Q ss_pred HHCCCEEEeC--------------------------------------CeEEEEecCC-------CCCeEEEec------
Q 014355 287 SKQGLVEESQ--------------------------------------GARVIFIEGV-------NIPLIIVKS------ 315 (426)
Q Consensus 287 ~~~g~~~~~d--------------------------------------Ga~~~~~~g~-------~~d~Vl~ks------ 315 (426)
.++|++|... |..++++..+ -.|+||+|.
T Consensus 183 i~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~~~Dfvl~R~~~~~hp 262 (553)
T 3aii_A 183 IERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHP 262 (553)
T ss_dssp HHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGGGTTCEEEEECCSCBT
T ss_pred HHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCCCCCcEEEEecCCCCC
Confidence 9999888521 1234555321 147899986
Q ss_pred ---C---CccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC
Q 014355 316 ---D---GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG 389 (426)
Q Consensus 316 ---D---G~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g 389 (426)
| |.|+|. +|..++.. ..|.+++| .|.||..+-++...+.+++|+. .+.+.|+ ++++ .+|
T Consensus 263 ~~Gd~~~g~PtYh---fa~~vDD~-~~GIThvi--RG~D~~~nt~~Q~~l~~alG~~------~P~y~H~--~~L~-~~g 327 (553)
T 3aii_A 263 RTGTRYRVYPMMN---FSVAVDDH-LLGVTHVL--RGKDHLANREKQEYLYRHLGWE------PPEFIHY--GRLK-MDD 327 (553)
T ss_dssp TTBTSCCEEECHH---HHHHHHHH-HTTCCEEE--C-----CHHHHHHHHHHHHTCC------CCEEECC--CCBC----
T ss_pred ccCCCceeeeeee---eeeeeeec-cCCCceEe--ccHhhhhCHHHHHHHHHHcCCC------CCeEEEe--eEEe-cCC
Confidence 3 355554 78777765 57999996 8999988877777778899984 3567798 5575 478
Q ss_pred ccccccCCC---------------ceeHHHHHHH
Q 014355 390 KRLRTRFSE---------------VVRLVDLLDE 408 (426)
Q Consensus 390 ~kmSkR~G~---------------~v~L~dLlde 408 (426)
.|||||+|+ +.|+.+|.+.
T Consensus 328 ~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~r 361 (553)
T 3aii_A 328 VALSTSGAREGILRGEYSGWDDPRLGTLRAIARR 361 (553)
T ss_dssp ----CHHHHHHHHHSSCCSTTCTTSCBHHHHHHT
T ss_pred ceechhhhhhhccccccccccCcchHHHHHHHHc
Confidence 999999997 7789999876
No 31
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.47 E-value=1.8e-13 Score=143.02 Aligned_cols=211 Identities=12% Similarity=0.048 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHH
Q 014355 104 NWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGM 183 (426)
Q Consensus 104 ~~~~~~l~~~l~~~~~~~~~~~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~ 183 (426)
.|+...+.+-|..|.. ++|+ -=..|.|||+|||||+|++++-..+|| +|.+...--+.|.-
T Consensus 9 ~fi~~~i~~dl~~~~~--------~~v~-tRFaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD----- 69 (553)
T 1qtq_A 9 NFIRQIIDEDLASGKH--------TTVH-TRFPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTN----- 69 (553)
T ss_dssp CHHHHHHHHHHHHTSC--------SSCE-EEECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCC-----
T ss_pred hHHHHHHHhHhhcCCc--------CceE-EEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCC-----
Confidence 3556666666655432 1343 345799999999999999988555554 56667776677731
Q ss_pred HHHHHHhhCCCCCccccccHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHc
Q 014355 184 LIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRL 263 (426)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~L 263 (426)
+ .+ . ...+.+.|.++++.|
T Consensus 70 -----------------~-------------~R--~-----------------------------~~e~~~~I~edL~wL 88 (553)
T 1qtq_A 70 -----------------P-------------VK--E-----------------------------DIEYVESIKNDVEWL 88 (553)
T ss_dssp -----------------G-------------GG--C-----------------------------CHHHHHHHHHHHHHT
T ss_pred -----------------c-------------hh--c-----------------------------CHHHHHHHHHHHHHc
Confidence 0 00 0 112234566678888
Q ss_pred CCceee--eccccccCcHHHHHHHHHHCCCEEEe--------------------------------------------CC
Q 014355 264 RVDLEE--KGESFYNPYIPGVIDELSKQGLVEES--------------------------------------------QG 297 (426)
Q Consensus 264 gi~fd~--~~Es~~~~~v~~vi~~L~~~g~~~~~--------------------------------------------dG 297 (426)
|+..|. ..-|.|.+...+.+++|.++|++|.. +|
T Consensus 89 Gl~wde~~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~g 168 (553)
T 1qtq_A 89 GFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEG 168 (553)
T ss_dssp TCCCSSSCEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCTT
T ss_pred CCCCCCCCeehcccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccCC
Confidence 887631 22344445556677778888877742 11
Q ss_pred eEEEEec----C---CCCCeEEEe---------cC---CccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHH
Q 014355 298 ARVIFIE----G---VNIPLIIVK---------SD---GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFS 358 (426)
Q Consensus 298 a~~~~~~----g---~~~d~Vl~k---------sD---G~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~ 358 (426)
..+++.. . .-.|+||+| +| |.|||. +|..++.. ..|.+++| .|.+|+.|-+....
T Consensus 169 ~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~---la~vvDDh-~~GITHvi--Rg~e~~~n~~~q~~ 242 (553)
T 1qtq_A 169 KACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYD---FTHCISDA-LEGITHSL--CTLEFQDNRRLYDW 242 (553)
T ss_dssp SCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHH---HHHHHHHH-HTTCSEEE--EEGGGTTTHHHHHH
T ss_pred ceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCCccccccc---cccEEEec-cCCcceEe--eccchhhhHHHHHH
Confidence 2333421 0 113789999 66 477777 77777766 57999995 89999998887778
Q ss_pred HHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCC---------------ceeHHHHHHH
Q 014355 359 AAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE---------------VVRLVDLLDE 408 (426)
Q Consensus 359 ~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~---------------~v~L~dLlde 408 (426)
+.+++|+. ..+...|. +.+. .+|.|||||+|+ +.|+.++++.
T Consensus 243 l~~alg~~-----~~P~~~~f--~hLn-~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~r 299 (553)
T 1qtq_A 243 VLDNITIP-----VHPRQYEF--SRLN-LEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRR 299 (553)
T ss_dssp HHHTSCCS-----CCCEEEEE--CCCC-BTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHH
T ss_pred HHHHcCCC-----CCCCeEEE--Eeec-CCCccccccccccccccCcccCCCCcchhhHHHHHHC
Confidence 88999983 11333354 4453 578999999986 7899999986
No 32
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=99.47 E-value=2.9e-13 Score=149.53 Aligned_cols=148 Identities=20% Similarity=0.139 Sum_probs=105.3
Q ss_pred eCHHHHHHHHHHHHHcCCCCCCc-cCCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchh
Q 014355 101 LSKNWMAKNIQKMLVDGIETWAP-KLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGT 179 (426)
Q Consensus 101 l~~~~~~~~l~~~l~~~~~~~~~-~~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~ 179 (426)
.++..+....++.=++...+... ....++..|--..|||+|+|||||+|+.+++|+|+|.+|..||+|.+..+.+|+|.
T Consensus 25 y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Gl 104 (880)
T 4arc_A 25 YRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGL 104 (880)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCST
T ss_pred CChHHHHHHHHHHHHhcCCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCc
Confidence 34555555544433332222221 12345666666789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCccccccHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 014355 180 QFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKV 259 (426)
Q Consensus 180 Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~ 259 (426)
++...+.. .+ ..| ++++....+.|+++
T Consensus 105 pie~~a~~-----------~g------------------~~p------------------------~~~~~~~i~~~~~~ 131 (880)
T 4arc_A 105 PAEGAAVK-----------NN------------------TAP------------------------APWTYDNIAYMKNQ 131 (880)
T ss_dssp HHHHHHHH-----------TT------------------SCH------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----------cC------------------CCH------------------------HHHHHHHHHHHHHH
Confidence 88654311 00 001 12345566889999
Q ss_pred HHHcCCceeeecc-----ccccCcHHHHHHHHHHCCCEEEeCCeEEE
Q 014355 260 YKRLRVDLEEKGE-----SFYNPYIPGVIDELSKQGLVEESQGARVI 301 (426)
Q Consensus 260 ~~~Lgi~fd~~~E-----s~~~~~v~~vi~~L~~~g~~~~~dGa~~~ 301 (426)
+++||+.+||..+ ..|...+.+++.+|.++|++|+.+..+++
T Consensus 132 l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~w 178 (880)
T 4arc_A 132 LKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNW 178 (880)
T ss_dssp HHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC--
T ss_pred HHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEee
Confidence 9999999997533 34567899999999999999987655443
No 33
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=99.42 E-value=6e-13 Score=147.64 Aligned_cols=121 Identities=18% Similarity=0.178 Sum_probs=95.7
Q ss_pred ceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHH
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (426)
++..|--..|||+|++||||+|+.+++|+|+|.+|..||+|....+.+++|.++...+..
T Consensus 33 ~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k-------------------- 92 (878)
T 2v0c_A 33 GKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALK-------------------- 92 (878)
T ss_dssp -EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHH--------------------
T ss_pred CCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHH--------------------
Confidence 345555568999999999999999999999999999999999999999999887643310
Q ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec-----cccccCcHHHH
Q 014355 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPGV 282 (426)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~-----Es~~~~~v~~v 282 (426)
+|.+ .+++++.+.+.|++++++||+.+||.. +..|...+.++
T Consensus 93 ----------------------------~g~~-----~~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~ 139 (878)
T 2v0c_A 93 ----------------------------FGVH-----PKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWI 139 (878)
T ss_dssp ----------------------------TTCC-----HHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHH
T ss_pred ----------------------------cCCC-----HHHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHH
Confidence 0100 024567778899999999999999743 33456779999
Q ss_pred HHHHHHCCCEEEeCCeEEE
Q 014355 283 IDELSKQGLVEESQGARVI 301 (426)
Q Consensus 283 i~~L~~~g~~~~~dGa~~~ 301 (426)
+.+|.++|++|+.++.+++
T Consensus 140 f~~L~~kGliY~~~~~v~w 158 (878)
T 2v0c_A 140 FLKMWEKGLAYRAKGLVNW 158 (878)
T ss_dssp HHHHHHTTCEEEEEEEEEE
T ss_pred HHHHHHCCCEEEcceeEEE
Confidence 9999999999986655554
No 34
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.41 E-value=7e-13 Score=144.23 Aligned_cols=212 Identities=12% Similarity=0.003 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHH
Q 014355 103 KNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFG 182 (426)
Q Consensus 103 ~~~~~~~l~~~l~~~~~~~~~~~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~ 182 (426)
+.|+...+..-|..|.. ++|+ -=..|+|||+|||||+|++++- .|.+.+|.+...--+.|.-
T Consensus 48 ~~fi~~ii~~dl~~g~~--------~~v~-tRFaPSPtG~LHIGhARtAL~n-----~l~Ar~~gG~fiLRIEDTD---- 109 (851)
T 2hz7_A 48 PNFITEIIERDLEAGKY--------PRVV-TRFPPDPSGYAHLGHVFASLLD-----FNTARQYGGQFNLRMDDTN---- 109 (851)
T ss_dssp CCHHHHHHHHHHHTTSC--------SSCE-EEECCCSSSCCBHHHHHHHHHH-----HHHHHHTTCEEEEEECCCC----
T ss_pred HHHHHHHHHHHhhcCCc--------CceE-EEeCCCCCCCccHHHHHHHHHH-----HHHHHHcCCEEEEEECcCC----
Confidence 34566777666655331 1233 2347999999999999999884 4445567777777777731
Q ss_pred HHHHHHHhhCCCCCccccccHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHH
Q 014355 183 MLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKR 262 (426)
Q Consensus 183 ~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~ 262 (426)
+ .+ . ...+.+.|.++++.
T Consensus 110 ------------------~-------------~R--~-----------------------------~~e~~~~IledL~w 127 (851)
T 2hz7_A 110 ------------------P-------------EL--A-----------------------------RQEYVDSIADDLKW 127 (851)
T ss_dssp ------------------T-------------TT--C-----------------------------CHHHHHHHHHHHHH
T ss_pred ------------------c-------------cc--c-----------------------------cHHHHHHHHHHHHH
Confidence 0 00 0 11223566778888
Q ss_pred cCCcee--eeccccccCcHHHHHHHHHHCCCEEEeC----------------C---------------------------
Q 014355 263 LRVDLE--EKGESFYNPYIPGVIDELSKQGLVEESQ----------------G--------------------------- 297 (426)
Q Consensus 263 Lgi~fd--~~~Es~~~~~v~~vi~~L~~~g~~~~~d----------------G--------------------------- 297 (426)
||+..| ...-|.|.+...+++++|+++|++|... |
T Consensus 128 LGl~wde~~~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe~m~~G~~~~ 207 (851)
T 2hz7_A 128 LGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMKAGEFAD 207 (851)
T ss_dssp HTCCCTTCEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHHHHTTCSCT
T ss_pred cCCCCCCCcccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHHHHhcCCccc
Confidence 888873 2234666667788888888888888521 1
Q ss_pred -eEEEEec----C---CCCCeEEEecC------------CccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHH
Q 014355 298 -ARVIFIE----G---VNIPLIIVKSD------------GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVF 357 (426)
Q Consensus 298 -a~~~~~~----g---~~~d~Vl~ksD------------G~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~ 357 (426)
..++++. . .-.|+||+|++ |.|||. +|..++.. ..|.+++| .|.+|..|-+...
T Consensus 208 g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtYh---fA~vVDD~-~~GITHVi--RG~D~~~n~~~q~ 281 (851)
T 2hz7_A 208 GEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYD---FEHPLQDA-IEGVTHSM--CSLEFVDNRAIYD 281 (851)
T ss_dssp TSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHH---HHHHHHHH-HHTCSEEE--EEGGGTTTHHHHH
T ss_pred CCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCCccccccc---eeeEeeec-cCCcceee--cchhhhhChHHHH
Confidence 1233321 0 11378999987 345554 77777765 56999996 8999999888777
Q ss_pred HHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCC---------------ceeHHHHHHH
Q 014355 358 SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE---------------VVRLVDLLDE 408 (426)
Q Consensus 358 ~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~---------------~v~L~dLlde 408 (426)
.+.++||+. ..+...|. +.+. .+|.|||||+|+ +.|+.+|.+.
T Consensus 282 ~l~~alG~~-----~~P~~~~f--ahLn-~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~r 339 (851)
T 2hz7_A 282 WLMEKLNFD-----PRPHQYEF--GRRG-LEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRL 339 (851)
T ss_dssp HHHHHTTCS-----SCCEEEEE--CCEE-ETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHH
T ss_pred HHHHHcCCC-----CCCCceEE--EEec-CCCccccccccccccccCcccCCCCcchhHHHHHHHc
Confidence 888999983 11333343 4454 368899999986 6789999876
No 35
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=99.37 E-value=9.6e-13 Score=145.43 Aligned_cols=140 Identities=17% Similarity=0.164 Sum_probs=106.0
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
+.++.+|....|||+|+|||||+|+.+++|+++|..+..||+|.+..+.+++|.++...+.. ..+. .+...+.+
T Consensus 36 ~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k---~l~~---~~~~~~~~ 109 (821)
T 1ile_A 36 GGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEK---KLGL---KSKREIEA 109 (821)
T ss_dssp TSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHH---HTTC---CSHHHHHH
T ss_pred CCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHH---Hhcc---cccchHhh
Confidence 34578888999999999999999999999999999999999999999999999999865531 1110 00111110
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-----s~~~~~v~ 280 (426)
+ |.++..+.+++++..+.+.+++++++||+.+||..+ ..|...+.
T Consensus 110 ~------------------------------g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~ 159 (821)
T 1ile_A 110 Y------------------------------GIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIW 159 (821)
T ss_dssp H------------------------------CHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHH
T ss_pred c------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHH
Confidence 0 233444556667777888999999999988776433 34556799
Q ss_pred HHHHHHHHCCCEEEeCCeEEE
Q 014355 281 GVIDELSKQGLVEESQGARVI 301 (426)
Q Consensus 281 ~vi~~L~~~g~~~~~dGa~~~ 301 (426)
+++.+|.++|++|+..-.+++
T Consensus 160 ~~f~~L~~~Gliy~~~~~v~w 180 (821)
T 1ile_A 160 WSLKNLFDRGLLYRDHKVVPY 180 (821)
T ss_dssp HHHHHHHHTTCEEEECCEEEE
T ss_pred HHHHHHHHcCCeeecCcceEe
Confidence 999999999999987655544
No 36
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.22 E-value=2.8e-11 Score=134.82 Aligned_cols=134 Identities=14% Similarity=0.162 Sum_probs=103.2
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHH
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (426)
.++.+|....|||+|.|||||++|.+++|+++|..+..||+|.+....+..|..+...+... +- .+ .
T Consensus 47 ~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~----G~---~~-~----- 113 (917)
T 1ffy_A 47 NETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKK----GV---DR-K----- 113 (917)
T ss_dssp SCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHH----TC---CS-T-----
T ss_pred CCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHc----CC---Cc-h-----
Confidence 45788999999999999999999999999999999999999999999999999998665321 10 00 0
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHHH
Q 014355 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (426)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-----s~~~~~v~~ 281 (426)
.+ ...+| ++.+++++....+.+++.+++||+.+||..+ ..|...+.+
T Consensus 114 ---------~~-~~~~f------------------~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~ 165 (917)
T 1ffy_A 114 ---------KM-STAEF------------------REKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIR 165 (917)
T ss_dssp ---------TT-CHHHH------------------HHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHH
T ss_pred ---------hC-CHHHH------------------HHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHH
Confidence 00 01123 2344556677788999999999999987544 234567899
Q ss_pred HHHHHHHCCCEEEeCCeEEE
Q 014355 282 VIDELSKQGLVEESQGARVI 301 (426)
Q Consensus 282 vi~~L~~~g~~~~~dGa~~~ 301 (426)
++.+|.++|++|+..-.+++
T Consensus 166 ~F~~l~~kGliYr~~~~v~w 185 (917)
T 1ffy_A 166 IFGEMADKGLIYKGKKPVYW 185 (917)
T ss_dssp HHHHHHHTTCEEEEEEEEEE
T ss_pred HHHHHHHcCCeEecccceec
Confidence 99999999999986544443
No 37
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=99.12 E-value=2e-10 Score=128.88 Aligned_cols=140 Identities=18% Similarity=0.237 Sum_probs=101.4
Q ss_pred ceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHH
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (426)
++..|....|||+|.|||||+||.+++|+++|..|..||+|.+....+..|..+...+..+.. + +... +
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~--~------~~~~--~- 102 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKN--R------DPKT--I- 102 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHT--T------CHHH--H-
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhc--c------chhH--H-
Confidence 678999999999999999999999999999999999999999999999999999876543211 0 1110 0
Q ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-------ccccCcHH
Q 014355 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-------SFYNPYIP 280 (426)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-------s~~~~~v~ 280 (426)
+.+. ..+.-.. +.+.++. ..++++..+...+++.+++||+.+||..+ ..|...+.
T Consensus 103 ~~~~---~~~gi~~-------~~~~~~~--------~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~ 164 (967)
T 1wz2_A 103 WIYR---DVYKVPE-------EILWTFE--------DPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIE 164 (967)
T ss_dssp HHHH---TTSCCCH-------HHHHGGG--------SHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHH
T ss_pred HHHH---HhcCCCH-------HHHHHHH--------HHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHH
Confidence 1111 0011110 0001110 12455777888999999999999998654 23456789
Q ss_pred HHHHHHHHCCCEEEeC
Q 014355 281 GVIDELSKQGLVEESQ 296 (426)
Q Consensus 281 ~vi~~L~~~g~~~~~d 296 (426)
.++.+|.++|++|+..
T Consensus 165 ~~F~~L~~kGliyr~~ 180 (967)
T 1wz2_A 165 WQFWKLKEKGYIVKGA 180 (967)
T ss_dssp HHHHHTTTTTCEEECC
T ss_pred HHHHHHHHCCCEEEec
Confidence 9999999999999843
No 38
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=98.28 E-value=3.6e-06 Score=83.03 Aligned_cols=70 Identities=16% Similarity=0.276 Sum_probs=55.0
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSK 414 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~ 414 (426)
.+++|.+ ++|.||..|+..-..+++.+|+. .+...|.+ ++.+.+|+||||+.||+|.|.|--+++....+
T Consensus 168 ~~~~~~v--~~G~DQ~~~~~l~rdla~~~~~~------~p~~l~~p--ll~~l~G~KMSKS~~n~I~l~d~p~~i~~Ki~ 237 (323)
T 2cyb_A 168 HLGVDLA--VGGIDQRKIHMLARENLPRLGYS------SPVCLHTP--ILVGLDGQKMSSSKGNYISVRDPPEEVERKIR 237 (323)
T ss_dssp HTTCSEE--EEEGGGHHHHHHHHHHGGGGTCC------CCEEEEEC--CCBCTTSSBCCTTTTCSCBTTCCHHHHHHHHH
T ss_pred hcCCCEE--EechhhHHHHHHHHHHHHhcCCC------CceEEecC--cccCCCCCcccCCcCceeCCCCCHHHHHHHHH
Confidence 4688877 59999999998888888888873 34566764 58888899999999999999876555555443
No 39
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=2.7e-05 Score=78.78 Aligned_cols=70 Identities=13% Similarity=0.110 Sum_probs=45.3
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCC-CccccccCCCc-eeHHHHHHHHHHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED-GKRLRTRFSEV-VRLVDLLDEAKNR 412 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~-g~kmSkR~G~~-v~L~dLlde~~~~ 412 (426)
.+++|.++ +|.||..|+..-..+++.+|+. .+...|++ ++.+.+ |+|||||.|+. |.|.|==+++...
T Consensus 180 ~~~~~~v~--~G~DQ~~~~~l~rdl~~r~~~~------~p~~l~~p--ll~gl~~G~KMSKS~~ns~I~L~D~p~~i~kK 249 (394)
T 2dlc_X 180 FLDVDCQF--GGVDQRKIFVLAEENLPSLGYK------KRAHLMNP--MVPGLAQGGKMSASDPNSKIDLLEEPKQVKKK 249 (394)
T ss_dssp HTTCSEEE--EEGGGHHHHHHHHHHGGGGTCC------CCEEEEEC--CCCCCC----------CCSCBTTCCHHHHHHH
T ss_pred hhCCCEEe--cCccHHHHHHHHHHHHHHcCCC------CCEEEecc--cccCCCCCCcCCCCCCCCEEeccCCHHHHHHH
Confidence 46888774 8999999999888999999984 35677765 477777 89999999996 9887655555444
Q ss_pred HH
Q 014355 413 SK 414 (426)
Q Consensus 413 a~ 414 (426)
.+
T Consensus 250 I~ 251 (394)
T 2dlc_X 250 IN 251 (394)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 40
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=97.88 E-value=7e-06 Score=82.54 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=44.5
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCC-ceeHHHHHHHHHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE-VVRLVDLLDEAKN 411 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~-~v~L~dLlde~~~ 411 (426)
.+++|.++ +|.||..|+..-..+++.+|+. .+...|.+ ++.+.+|+|||||.|+ .|.|.|==+++..
T Consensus 176 ~~~a~~v~--~G~DQ~~~~~l~rdl~~r~~~~------~p~~l~~p--ll~gldG~KMSKS~~ns~I~L~d~p~~i~k 243 (372)
T 1n3l_A 176 YLKVDAQF--GGIDQRKIFTFAEKYLPALGYS------KRVHLMNP--MVPGLTGSKMSSSEEESKIDLLDRKEDVKK 243 (372)
T ss_dssp HTTCSEEE--EEGGGHHHHHHHHHHGGGGTCC------CCEEEEEC--CCCCSSCC-------CCSCBTTCCHHHHHH
T ss_pred HhcCCEEE--cChhHHHHHHHHHHHHHHcCCC------CCEEEecC--ccCCCCcccccCCCCCCeEeccCCHHHHHH
Confidence 36787775 8999999999888999999874 34566664 4888889999999999 7988654444333
No 41
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=97.59 E-value=5.2e-05 Score=84.54 Aligned_cols=69 Identities=16% Similarity=0.254 Sum_probs=52.2
Q ss_pred EEEeeCCcc-ccHHHHHHHHH-HcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHHH
Q 014355 342 IYVTDVGQQ-LHFDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVL 417 (426)
Q Consensus 342 i~V~g~~q~-~hf~~~~~~~~-~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~i 417 (426)
+|+.|.||. +||..+..... ..|.. ++...+.| |+|++.+|+|||||+||+|+..|++++....|.+.-
T Consensus 551 l~~~G~D~~r~wf~~~l~~s~~~~g~~----Pfk~v~~h---G~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~ 621 (917)
T 1ffy_A 551 MYLEGSDQYRGWFNSSITTSVATRGVS----PYKFLLSH---GFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLW 621 (917)
T ss_dssp EEEEEGGGGTTHHHHHHHHHHHHHSSC----SBSEEEEE---CCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHH
T ss_pred EEEEEecccccHHHHHHHHHHHhhCCC----cccceeEe---eeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHH
Confidence 678999997 57887643333 34542 34444555 789988999999999999999999999888777643
No 42
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=97.44 E-value=6.6e-05 Score=82.88 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=51.6
Q ss_pred EEEeeCCcc-ccHHHHHHHHHHc-CCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHH
Q 014355 342 IYVTDVGQQ-LHFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 342 i~V~g~~q~-~hf~~~~~~~~~l-g~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~ 416 (426)
+++.|.||. .||..+..+..++ |.. ++...+.| |+|++.+|+|||||+||+|+..|++++....|.+.
T Consensus 547 l~~~G~D~~r~w~~~~~~~~~~~~~~~----pf~~v~~h---g~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~ 616 (821)
T 1ile_A 547 FIAEGIDQTRGWFNSLHQLGVMLFGSI----AFKNVICH---GLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRW 616 (821)
T ss_dssp BEEEEGGGGGTHHHHHHHHHHHHHSSC----SBSEEEEE---CCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHH
T ss_pred cccchhhhhccHHHHHHHHHHHhcCCC----CcceEEEE---eeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHH
Confidence 668999997 4677665555543 442 34445555 78998899999999999999999999987776664
No 43
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=97.31 E-value=0.0014 Score=64.14 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=46.8
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC-ccccccCCCceeHHHHHHHHHHHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG-KRLRTRFSEVVRLVDLLDEAKNRS 413 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g-~kmSkR~G~~v~L~dLlde~~~~a 413 (426)
.+++|.++ +|.||..|+...+.+++ + .+...|.+ ++.+-+| +||||+.|++|.|.|=-+++....
T Consensus 161 ~~~~~~v~--~G~DQ~~~~~l~R~i~~-----~-----~~~~~~~~--~l~~l~G~~KMSKS~~~~I~L~d~~~~i~~KI 226 (314)
T 2zp1_A 161 YLGVDVAV--GGMEQRKIHMLARELLP-----K-----KVVCIHNP--VLTGLDGEGKMSSSKGNFIAVDDSPEEIRAKI 226 (314)
T ss_dssp HHTCSEEE--EEGGGHHHHHHHHHHSS-----S-----CCEEEEEC--CCBCTTSSSBCCTTTTCSCBTTCCHHHHHHHH
T ss_pred hhCCCEEE--cChhHHHHHHHHHHhcC-----C-----CcEEeecc--ccccCCcccccCCCCcceecCCCCHHHHHHHH
Confidence 35788775 89999998854444321 1 24556664 4777788 799999999999987666666555
Q ss_pred HH
Q 014355 414 KA 415 (426)
Q Consensus 414 ~~ 415 (426)
+.
T Consensus 227 ~~ 228 (314)
T 2zp1_A 227 KK 228 (314)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 44
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=97.24 E-value=0.00028 Score=69.95 Aligned_cols=65 Identities=23% Similarity=0.330 Sum_probs=45.5
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCC-CCCCCCCCc--EEEEEeEEEEcCCCccccccCCCceeHHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTYPK--ASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~-~~~~~~~~~--~~Hv~~g~v~~~~g~kmSkR~G~~v~L~d 404 (426)
.+++|.+ .+|.||..|+..-..+++.++.. .+ -...+. +.|. -++.+-+|.||||+.||+|.|.|
T Consensus 151 ~~~~~~v--pvG~DQ~~hi~l~rdia~r~n~~yg~-~f~~P~~~~~~~--~~l~gldG~KMSKS~~n~I~L~d 218 (340)
T 2g36_A 151 IYKAEGV--PVGEDQVYHIELTREIARRFNYLYDE-VFPEPEAILSRV--PKLPGTDGRKMSKSYGNIINLEI 218 (340)
T ss_dssp TTTCSEE--EECGGGHHHHHHHHHHHHHHHHHSCC-CCCCCEEEECCS--CCCCCTTSSCCCGGGTCCCBTTC
T ss_pred HhCCCEE--EcccchHHHHHHHHHHHHHhhhhccc-ccCCchhhhccc--cccCCCCccccCCCCCCeEeeeC
Confidence 4678777 49999999999888888876521 00 001232 3333 45777789999999999999977
No 45
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=97.02 E-value=0.00036 Score=77.26 Aligned_cols=73 Identities=16% Similarity=0.351 Sum_probs=51.6
Q ss_pred EEEeeCCc-ccc--HHHH-HHHHHHcCCCCCCCCCCCcEEEEEeEEEE-------cCCCc--------------------
Q 014355 342 IYVTDVGQ-QLH--FDMV-FSAAKRAGWLSADDSTYPKASHVGFGLVL-------GEDGK-------------------- 390 (426)
Q Consensus 342 i~V~g~~q-~~h--f~~~-~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~-------~~~g~-------------------- 390 (426)
+||.|.|| -+| +.+. .+++..+|+.+...|+. .+.+ .|||+ +.+|+
T Consensus 546 ~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk-~ll~--qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~ 622 (880)
T 4arc_A 546 IYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAK-QLLC--QGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIV 622 (880)
T ss_dssp EEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEE-EEEC--CCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEE
T ss_pred EeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChH-HeEE--eceEeecceeccccCCcccccCHHHhccccccccccc
Confidence 67899998 345 3554 36677788743322332 2332 28885 56676
Q ss_pred ----------------cccccCCCceeHHHHHHHHHHHHHHHH
Q 014355 391 ----------------RLRTRFSEVVRLVDLLDEAKNRSKAVL 417 (426)
Q Consensus 391 ----------------kmSkR~G~~v~L~dLlde~~~~a~~~i 417 (426)
||||++||+|+.+|++++....|.+.-
T Consensus 623 ~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGADalRl~ 665 (880)
T 4arc_A 623 KAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLF 665 (880)
T ss_dssp EEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCHHHHHHH
T ss_pred cccccCCccccccccccccCcCCCCCCHHHHHHHcCchHHHHH
Confidence 999999999999999999888887653
No 46
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=96.95 E-value=0.00042 Score=76.88 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=54.0
Q ss_pred CCCeEEEEeeCCc-cccHH--HH-HHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC-------------------------
Q 014355 337 KAEWIIYVTDVGQ-QLHFD--MV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGE------------------------- 387 (426)
Q Consensus 337 ~~d~~i~V~g~~q-~~hf~--~~-~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~------------------------- 387 (426)
.+| +||.|.|| .+|+- +. ..++..+|+.....|+...+.| |||+++
T Consensus 531 P~D--~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l~~~---G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (878)
T 2v0c_A 531 PVD--QYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQ---GMVLAWTDFGPVEVEGSVVRLPEPTRIRLEI 605 (878)
T ss_dssp SBS--EEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECC---CCEEEEEEEEEEEEETTEEECCHHHHHHHTC
T ss_pred CCe--EEEechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhheec---ceEeccceeccccccccceeccccccccccc
Confidence 455 45799998 45533 43 3566777853332355445555 889873
Q ss_pred ---------------------CC-------ccccccCCCceeHHHHHHHHHHHHHHHH
Q 014355 388 ---------------------DG-------KRLRTRFSEVVRLVDLLDEAKNRSKAVL 417 (426)
Q Consensus 388 ---------------------~g-------~kmSkR~G~~v~L~dLlde~~~~a~~~i 417 (426)
+| +|||||+||+|+.+|++++.+..|.+.-
T Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ 663 (878)
T 2v0c_A 606 PESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARIT 663 (878)
T ss_dssp SCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHH
T ss_pred cCchhhhhccccccceeeccCCCCchhhhHHHhhccCCCcccHHHHHHHcCccHHHHH
Confidence 89 8999999999999999999888877653
No 47
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=96.80 E-value=0.0027 Score=68.48 Aligned_cols=86 Identities=10% Similarity=0.052 Sum_probs=56.3
Q ss_pred CccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC-CC-ccccc
Q 014355 317 GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DG-KRLRT 394 (426)
Q Consensus 317 G~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~-~g-~kmSk 394 (426)
|..+|..-= + +.+..+++|.+ .+|.||..|+..-..+++.+|.. ..+.+.|. .++.+- +| +||||
T Consensus 167 g~f~YPlLQ---A-aDil~~~ad~v--pvG~DQ~~~l~l~Rdla~r~n~~-----~~p~~l~~--~~l~gL~dG~~KMSK 233 (690)
T 3p0j_A 167 AQVLYPLMQ---C-CDIFFLKADIC--QLGLDQRKVNMLAREYCDLIGRK-----LKPVILSH--HMLAGLKQGQAKMSK 233 (690)
T ss_dssp SCSSHHHHH---H-HHHHHTTCSEE--CCBGGGHHHHHHHHHHHHHTTCC-----CCCEEEEB--CCCCCSSTTCSSCBT
T ss_pred hhHhhHHHH---H-HHHHhhCCCEE--eccccHHHHHHHHHHHHHHhCCC-----CCceEeec--CeeecCCCCCcCCCC
Confidence 667776321 1 11223577765 48999999999888999999873 12344454 347665 77 49999
Q ss_pred cCC-CceeHHHHHHHHHHHHHH
Q 014355 395 RFS-EVVRLVDLLDEAKNRSKA 415 (426)
Q Consensus 395 R~G-~~v~L~dLlde~~~~a~~ 415 (426)
+.| +.|.|.|==+++....+.
T Consensus 234 S~~~~~I~L~D~p~~i~kKI~~ 255 (690)
T 3p0j_A 234 SDPDSAIFMEDTEEDVARKIRQ 255 (690)
T ss_dssp TBGGGSCBTTCCHHHHHHHHHT
T ss_pred CCCCCeeeccCCHHHHHHHHHh
Confidence 998 689886555555444433
No 48
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=96.71 E-value=0.0013 Score=72.48 Aligned_cols=70 Identities=10% Similarity=0.056 Sum_probs=47.3
Q ss_pred CCCeEEEEeeCCccc-cHHHHHHHHH--H-cCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHH
Q 014355 337 KAEWIIYVTDVGQQL-HFDMVFSAAK--R-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNR 412 (426)
Q Consensus 337 ~~d~~i~V~g~~q~~-hf~~~~~~~~--~-lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~ 412 (426)
.+| +++.|.||.. |. .+.++. + ++.. ++...+.|. |+|+. +|+|||||+||+|+.+|++++....
T Consensus 603 p~D--i~~~G~D~~~~H~--~~~~~~~~~~~~~~----~~pk~v~~~--G~v~~-~G~KMSKS~GNvv~p~dli~~yGaD 671 (810)
T 1wkb_A 603 PLD--WRCSGKDLIPNHL--TFFIFNHVAIFREE----HWPKGIAVN--GFGTL-EGQKMSKSKGNVLNFIDAIEENGAD 671 (810)
T ss_dssp SCS--EEEEEGGGTTTHH--HHHHHHHHHHSCGG----GSCCEEEEE--CCEEE-TTBCCCTTTTCCCBHHHHHHHHCHH
T ss_pred Cce--EEeecccccccHH--HHHHHHHHHHcCcc----ccccEEEEE--eEEEe-CCeehhhcCCCcCCHHHHHHHcChH
Confidence 456 7789999843 31 122222 2 2310 233467776 66876 7999999999999999999998887
Q ss_pred HHHHH
Q 014355 413 SKAVL 417 (426)
Q Consensus 413 a~~~i 417 (426)
|.+.-
T Consensus 672 alR~~ 676 (810)
T 1wkb_A 672 VVRLY 676 (810)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77643
No 49
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=96.38 E-value=0.0027 Score=71.21 Aligned_cols=72 Identities=8% Similarity=0.020 Sum_probs=47.2
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHH--HH-cCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHH
Q 014355 336 EKAEWIIYVTDVGQQLHFDMVFSAA--KR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNR 412 (426)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~--~~-lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~ 412 (426)
+.+| +++.|.||.. |...+.++ .+ .+- .++...+.|. |+|+. +|+||||++||+|+..|++++....
T Consensus 602 ~P~D--i~~~G~D~i~-~H~~~~~~~~~a~~~~----~~~pk~v~~~--G~v~~-~G~KMSKS~GNvv~p~d~i~~yGaD 671 (967)
T 1wz2_A 602 YPLD--WRCSGKDLIP-NHLTFFIFNHVAIFRE----EHWPKGIAVN--GFGTL-EGQKMSKSKGNVLNFIDAIEENGAD 671 (967)
T ss_dssp CSCS--EEEEEGGGTT-THHHHHHHHHHHHSCS----TTSCCCEEEE--CCEEE-SSSCCCTTTCCCCBHHHHHHTTCHH
T ss_pred CCCe--EEeeeeCcch-hHHHHHHHHHHHHcCc----ccccceEEEe--eEEee-CCEEccccccCCCCHHHHHHHhChH
Confidence 3556 6678998832 11112222 22 232 1233567777 66876 7999999999999999999998777
Q ss_pred HHHHH
Q 014355 413 SKAVL 417 (426)
Q Consensus 413 a~~~i 417 (426)
|.+.-
T Consensus 672 alR~~ 676 (967)
T 1wz2_A 672 VVRLY 676 (967)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76643
No 50
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=95.24 E-value=0.0039 Score=62.04 Aligned_cols=59 Identities=12% Similarity=-0.037 Sum_probs=34.5
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHH
Q 014355 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (426)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~d 404 (426)
+++|.+ ++|.||..|+..-..+++.++.. .+...+. -++.+.+|+||||+.||+|.|+|
T Consensus 209 ~~~~i~--p~G~DQ~~~i~l~rdla~r~n~~------~~~~l~~--pll~~ldG~KMSKS~~naI~L~d 267 (356)
T 2pid_A 209 YGCRVQ--LGGSDQLGNIMSGYEFINKLTGE------DVFGITV--PLITSTTGAKLGKSAGNAVWLNR 267 (356)
T ss_dssp HCCCEE--EEEGGGHHHHHHHHHHHHHHSSC------CCEEEEE--CCCC-------------CCBSST
T ss_pred CCCcEE--eccHHHHHHHHHHHHHHHHhCCC------Ccccccc--ccccCCCcccccCCCCCeeeccC
Confidence 477766 48999999999889999998873 1233344 44777789999999999999987
No 51
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=94.87 E-value=0.0046 Score=60.72 Aligned_cols=59 Identities=12% Similarity=0.012 Sum_probs=45.0
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHH
Q 014355 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (426)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~d 404 (426)
+++| |=++|.||..|+..-..+++.++.. .+.. +..-++.+.+|+||||+.||+|.|+|
T Consensus 190 ~~~~--v~~gG~DQ~~~i~l~rdla~r~n~~------~~~~--l~~pll~gldG~KMSKS~~n~I~L~d 248 (322)
T 2yxn_A 190 YGVV--LCIGGSDQWGNITSGIDLTRRLHQN------QVFG--LTVPLITKADGTKFGKTEGGAVWLDP 248 (322)
T ss_dssp HCEE--EEEECTTCHHHHHHHHHHHHHHHCC------CCEE--EECCCCBCTTSCBTTEETTEECBSST
T ss_pred CCce--EEecCchhHHHHHHHHHHHHHhCCC------Ccee--eccCccCCCCcccccCCCCCeeeccC
Confidence 3555 4468999999999888999988862 1222 23345777789999999999999887
No 52
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=94.65 E-value=0.0092 Score=60.82 Aligned_cols=60 Identities=13% Similarity=0.003 Sum_probs=46.7
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCC-ceeHHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE-VVRLVD 404 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~-~v~L~d 404 (426)
.+++|.+ ++|.||..|+..-..+++.++.. .+...+. -++.+.+|+||||+.|| +|.|+|
T Consensus 185 ~~~~~i~--~gG~DQ~~ni~lgrdlarr~~~~------~~~~l~~--plL~~ldG~KMSKS~~nsaI~L~d 245 (432)
T 2jan_A 185 RHGCTLQ--IGGADQWGNIIAGVRLVRQKLGA------TVHALTV--PLVTAADGTKFGKSTGGGSLWLDP 245 (432)
T ss_dssp HHCCCEE--EECSTTHHHHHHHHHHHHHHHCC------CCEEEEC--CCCBCTTSCBTTBCSSSCBCBSST
T ss_pred cCCCcEE--eccHHHHHHHHHHHHHHHHhCCC------Ccccccc--ccccCCCcCcCCCCCCCCeEEccC
Confidence 3477766 48999999999888999888863 1233333 45778899999999999 999887
No 53
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=94.41 E-value=0.011 Score=60.02 Aligned_cols=59 Identities=20% Similarity=0.102 Sum_probs=45.9
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHc-CCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHH
Q 014355 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (426)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~l-g~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~d 404 (426)
+++|.. ++|.||..|+..=..+++.+ +.. .+...+. -++.+.+|+||||+.||+|.|+|
T Consensus 185 ~~~~i~--~gG~DQ~~ni~~grdla~r~~~~~------~~~~l~~--pll~~ldG~KMSKS~~naI~L~d 244 (420)
T 1jil_A 185 LNCKIQ--VGGSDQWGNITSGIELMRRMYGQT------DAYGLTI--PLVTKSDGKKFGKSESGAVWLDA 244 (420)
T ss_dssp HCEEEE--EEEGGGHHHHHHHHHHHHHHHCCC------CCEEEEE--CCCBCTTSCBTTBCSSSBCBSST
T ss_pred CCCcEE--eccHHHHHHHHHHHHHHHHhcCCC------CeeEeec--ccccCCccccccCCCCCeEecCC
Confidence 355544 58999999999888999988 762 1334444 45888899999999999999987
No 54
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=94.32 E-value=0.01 Score=60.24 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=44.9
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHc-CCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHH
Q 014355 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (426)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~l-g~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~d 404 (426)
+++|.. ++|.||..|+..-..+++.+ +.. .+...+. -++.+.+|+||||+.||+|.|+|
T Consensus 184 ~~~~i~--~gG~DQ~~ni~lgrdlarr~~~~~------~~~~lt~--pll~~ldG~KMSKS~~naI~L~d 243 (419)
T 2ts1_A 184 EGCRLQ--IGGSDQWGNITAGLELIRKTKGEA------RAFGLTI--PLVTKADGTKFGKTESGTIWLDK 243 (419)
T ss_dssp HCEEEE--EEEGGGHHHHHHHHHHHHHHHC--------CCEEEEE--CCCCCTTSCCTTCCSSCCCBSST
T ss_pred CCCcEE--eccHHHHHHHHHHHHHHHHhcCCC------Ceeeccc--ccccCCCcccccCCCCCeEecCC
Confidence 465544 58999999999888999888 752 1334444 45778889999999999999987
No 55
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=94.28 E-value=0.028 Score=57.26 Aligned_cols=59 Identities=14% Similarity=0.221 Sum_probs=45.9
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCc-cccccCCCceeHHH
Q 014355 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTRFSEVVRLVD 404 (426)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~-kmSkR~G~~v~L~d 404 (426)
+++|.+ ++|.||..|+..-..+++.+|..+ ....|. -++.+.+|. ||||+.||+|.|+|
T Consensus 186 l~~~l~--~gG~DQ~~ni~l~rdlarr~~~~~------~~~lt~--pll~gldG~~KMSKS~~n~I~L~d 245 (432)
T 1h3f_A 186 IRADVE--MGGTDQRFNLLVGREVQRAYGQSP------QVCFLM--PLLVGLDGREKMSKSLDNYIGLTE 245 (432)
T ss_dssp HTCSEE--EEEGGGHHHHHHHHHHHHHTTCCC------CEEEEE--CCCBCTTSSSBCCGGGTCCCBTTS
T ss_pred cCccEE--EechHHHHHHHHHHHHHHHhCCCC------ceEeec--ccccCCCCccccCcCCCCeeCCCC
Confidence 457766 499999999988889999888631 233344 457778886 99999999999987
No 56
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=93.01 E-value=0.046 Score=55.69 Aligned_cols=63 Identities=11% Similarity=0.174 Sum_probs=41.9
Q ss_pred EeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC--ccccccCCC-ceeHHHHHHHHHHHHH
Q 014355 344 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDEAKNRSK 414 (426)
Q Consensus 344 V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g--~kmSkR~G~-~v~L~dLlde~~~~a~ 414 (426)
.+|.||..|+.--..+++.+|+. .+...|. -++.+-+| .||||+.|| .|.|.|==+++.++..
T Consensus 254 p~G~DQ~~~i~l~Rdla~r~~~~------~p~~l~~--~ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~~KI~ 319 (432)
T 2ip1_A 254 PCAIDQDPYFRVCRDVADKLKYS------KPALLHS--RFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKIN 319 (432)
T ss_dssp EEEGGGHHHHHHHHHHHHHHTSC------CCEEEEE--CCCCCTTC--------CGGGCCBTTCCHHHHHHHHH
T ss_pred EeccCcHHHHHHHHHHHHHhCCC------Cceeecc--ccccCCCCCccccCCCCCCCeEeccCCHHHHHHHhh
Confidence 59999999998888999999973 2344555 44877888 899999999 8988774444444443
No 57
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=92.50 E-value=0.051 Score=53.56 Aligned_cols=67 Identities=21% Similarity=0.252 Sum_probs=46.9
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHc----C--CCCCCCCCCCcEEEEEe-EEEEcCCC-ccccccCCCceeHHHHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRA----G--WLSADDSTYPKASHVGF-GLVLGEDG-KRLRTRFSEVVRLVDLL 406 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~l----g--~~~~~~~~~~~~~Hv~~-g~v~~~~g-~kmSkR~G~~v~L~dLl 406 (426)
.+++|.+ .+|.||..|+..-..+++.+ | + ..+...|... -++.+-+| +||||+.||.|.|.|==
T Consensus 139 ~~~~~lv--p~G~DQ~~~i~l~rdla~r~n~~~g~~f------~~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d~p 210 (337)
T 2el7_A 139 IYKADTV--PVGEDQVQHIELTREIARRFNHLFGETF------PEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLEPE 210 (337)
T ss_dssp HTTCCEE--ECCGGGCHHHHHHHHHHHHHHHHHSSCC------CCCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSSCH
T ss_pred hhCCcEE--EcccchHHHHHHHHHHHHHHHhhcCccc------CCCeeecccccccccCCCCccccCCCCCCeeeCcCCH
Confidence 4678776 49999999999877888765 4 2 1244444311 25777788 89999999999886543
Q ss_pred HHH
Q 014355 407 DEA 409 (426)
Q Consensus 407 de~ 409 (426)
+++
T Consensus 211 ~~i 213 (337)
T 2el7_A 211 ESI 213 (337)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 58
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=92.47 E-value=0.051 Score=54.13 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=49.6
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCC-----------------Ccccccc-C
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED-----------------GKRLRTR-F 396 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~-----------------g~kmSkR-~ 396 (426)
.+++|.++ +|.||..|+..-..+++.+|+. .+...|.++ +.+-+ |+||||+ .
T Consensus 175 ~~~~~~v~--~G~DQ~~~~~l~rdla~r~~~~------~p~~l~~~l--l~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~ 244 (364)
T 2cya_A 175 YMDLDIAL--GGMDQRKAHMLARDVAEKLGRK------KPVAIHTPI--ISSLQGPGRMEASQGEIDDVLAEVKMSKSKP 244 (364)
T ss_dssp HTTCSEEE--EEGGGHHHHHHHHHHHTTTTCC------CCEEEEECC--CBCSSCC----------------CBCCSSSG
T ss_pred hcCCCEEe--ccchHHHHHHHHHHHHHHcCCC------Cceeeccce--eeCCCcccccccccccccccccccccCCCCC
Confidence 46788775 9999999998888999988873 244566644 66655 6899999 6
Q ss_pred CCceeHHHHHHHHHHHH
Q 014355 397 SEVVRLVDLLDEAKNRS 413 (426)
Q Consensus 397 G~~v~L~dLlde~~~~a 413 (426)
|+.|.|.|==+++....
T Consensus 245 ~~~I~L~d~p~~i~~Ki 261 (364)
T 2cya_A 245 ETAVFVVDSDDDIRRKI 261 (364)
T ss_dssp GGSCBTTCCHHHHHHHH
T ss_pred CCEeeccCCHHHHHHHH
Confidence 88898866544444433
No 59
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=92.06 E-value=0.024 Score=57.07 Aligned_cols=65 Identities=11% Similarity=-0.012 Sum_probs=43.2
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCC-----------CCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHH
Q 014355 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGW-----------LSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (426)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~-----------~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~d 404 (426)
+++|.+ ++|.||..|+..=..+++.++. .|+-....+...+. -++.+.+|+||||+.||.|.|+|
T Consensus 231 ~~~~i~--~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~--pll~~ldG~KMSKS~~naI~L~d 306 (392)
T 1y42_X 231 QGVQMQ--IGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTV--PLLTDSSGAKFGKSAGNAIWLDP 306 (392)
T ss_dssp HCEEEE--EECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEEC--CCCBCTTCCBTTBCSSSBCBSST
T ss_pred CCccEE--ecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCcccccc--ccCcCCchhhccCCCCCeeeccC
Confidence 466555 5899999999887777765421 11000011233344 45888899999999999999987
No 60
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=92.05 E-value=0.087 Score=52.11 Aligned_cols=69 Identities=10% Similarity=0.068 Sum_probs=49.7
Q ss_pred CCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcC-CC-ccccccC-CCceeHHHHHHHHHHHH
Q 014355 337 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DG-KRLRTRF-SEVVRLVDLLDEAKNRS 413 (426)
Q Consensus 337 ~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~-~g-~kmSkR~-G~~v~L~dLlde~~~~a 413 (426)
++|.++ +|.||..|+..-..+++.+|+. .+...|. .++.+- +| .||||+. |+.|.|.|==+++.+..
T Consensus 186 ~~~~~~--~G~DQ~~~i~l~Rdia~r~~~~------~p~~~~~--~~l~gL~dg~~KMSKS~~~~~I~L~d~p~~i~kKI 255 (348)
T 2j5b_A 186 GIDICQ--LGIDQRKVNMLAIEYANDRGLK------IPISLSH--HMLMSLSGPKKKMSKSDPQGAIFMDDTEQEVSEKI 255 (348)
T ss_dssp CCSEEC--CBGGGHHHHHHHHHHHHHTTCC------CCEEEEB--CCCCCTTCSSCCCSTTCGGGSCBTTCCHHHHHHHH
T ss_pred CCcEEE--eccChHHHHHHHHHHHHHhCCC------CceeecC--ccccCCCCcccccccCCCCCeEeecCCHHHHHHHH
Confidence 777664 8999999998888999999873 1334444 346555 56 6999998 58898876666655554
Q ss_pred HH
Q 014355 414 KA 415 (426)
Q Consensus 414 ~~ 415 (426)
++
T Consensus 256 ~k 257 (348)
T 2j5b_A 256 SR 257 (348)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 61
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=91.83 E-value=0.055 Score=54.43 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=39.0
Q ss_pred EEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC--ccccccCCC-ceeHHHHHHHHHHHHHH
Q 014355 342 IYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDEAKNRSKA 415 (426)
Q Consensus 342 i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g--~kmSkR~G~-~v~L~dLlde~~~~a~~ 415 (426)
+=.+|.||..|+..-..+++.+|+. .+...|.++ +.+-+| .||||+.+| .|.|.|==+++.+..++
T Consensus 223 lvp~G~DQ~~~i~l~Rdla~r~~~~------~p~~l~~~~--l~gLdG~~~KMSKS~~nsaI~L~D~p~~i~kKI~k 291 (393)
T 3hv0_A 223 LVPHAIDQDPYFRMVRDVAPRLGYL------KPSSIHSIF--LPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMK 291 (393)
T ss_dssp EEEEEGGGHHHHHHHHHHTGGGTCC------CCEEEEECC--CCC-------------CCCCBTTCCHHHHHHHHHH
T ss_pred ecccccchHHHHHHHHHHHHHcCCC------CceeeccCc--ccCCCCCCcCCCCCCCCCeEeccCCHHHHHHHHHh
Confidence 3368999999998888999999984 234556544 766677 699999987 89886655555555444
No 62
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=91.81 E-value=0.064 Score=54.65 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=47.8
Q ss_pred EeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC--ccccccCCC-ceeHHHHHHHHHHHHHH
Q 014355 344 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDEAKNRSKA 415 (426)
Q Consensus 344 V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g--~kmSkR~G~-~v~L~dLlde~~~~a~~ 415 (426)
-+|.||..|+..-..+++.+|+. .+...|.+ ++.+-+| .||||+.|| .|.|+|==+++..+...
T Consensus 261 pvG~DQ~~~i~l~Rdla~r~~~~------~P~~l~~p--ll~gLdG~~~KMSKS~~nsaI~L~D~p~~I~kKI~~ 327 (437)
T 1r6u_A 261 PCAIDQDPYFRMTRDVAPRIGYP------KPALLHST--FFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNK 327 (437)
T ss_dssp EEEGGGHHHHHHHHHHGGGGTCC------CCEEEEEC--CCEETTEEEEECCTTSSSSCCBTTCCHHHHHHHHHH
T ss_pred EeehhhHHHHHHHHHHHHHhCCC------CceEeecc--cccCCCCCccccCCCCCCCeeeccCCHHHHHHHhhc
Confidence 37999999998888888999973 23445554 4777888 799999999 89887655555554443
No 63
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=91.79 E-value=0.066 Score=55.24 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=48.4
Q ss_pred EeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC--ccccccCCC-ceeHHHHHHHHHHHHHH
Q 014355 344 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDEAKNRSKA 415 (426)
Q Consensus 344 V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g--~kmSkR~G~-~v~L~dLlde~~~~a~~ 415 (426)
.+|.||..|+..-..+++.+|+. .+...|.+ ++.+-+| .||||+.|| .|.|.|==+++..+...
T Consensus 308 pvG~DQ~~~i~l~Rdla~r~~~~------~p~~l~~p--ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~kKi~~ 374 (477)
T 1r6t_A 308 PCAIDQDPYFRMTRDVAPRIGYP------KPALLHST--FFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNK 374 (477)
T ss_dssp EEEGGGHHHHHHHHHHGGGGTCC------CCEEEEEC--CCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHH
T ss_pred eccccHHHHHHHHHHHHHHhCCC------Cceeeecc--cccCCCCCccccCCCCCCCceeecCCHHHHHHHhcc
Confidence 37999999998888899999973 23455654 4777888 799999999 89987665555555444
No 64
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=91.64 E-value=0.037 Score=54.21 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=45.6
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCC-CCCCCCCCcEEEE-EeEEEEcCCCccccccCCCceeHHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTYPKASHV-GFGLVLGEDGKRLRTRFSEVVRLVD 404 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~-~~~~~~~~~~~Hv-~~g~v~~~~g~kmSkR~G~~v~L~d 404 (426)
.+++|.+. +|.||..|+.--..+++.++.. ++ -...+...|. ..-++.+-+|+||||+.||.|.|.|
T Consensus 137 ~~~~~~vp--vG~DQ~~hi~l~Rdia~r~n~~~g~-~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d 205 (322)
T 3tzl_A 137 LFDTRIVP--VGKDQIQHVEIARDIALKVNNEWGE-IFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS 205 (322)
T ss_dssp HTTCSEEE--CCGGGHHHHHHHHHHHHHHHHHHCS-CSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC
T ss_pred HhCCcEEE--eccchHHHHHHHHHHHHHhcccccC-CCCCchhhhccccccccCCCCCcCCCCCCCceecCC
Confidence 36777764 9999999998878888777530 00 0112333331 1245777788999999999999875
No 65
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=91.58 E-value=0.11 Score=51.78 Aligned_cols=72 Identities=10% Similarity=0.055 Sum_probs=50.6
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEc-CCCc-cccccC-CCceeHHHHHHHHHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG-EDGK-RLRTRF-SEVVRLVDLLDEAKN 411 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~-~~g~-kmSkR~-G~~v~L~dLlde~~~ 411 (426)
.+++|.+ .+|.||..|+..-..+++.+|.. ..+.+.|.+ ++.+ .+|. ||||+. |+.|.|.|==+++..
T Consensus 198 ~l~ad~v--pgG~DQ~~~l~l~Rdla~r~~~~-----~~~~~l~~p--~l~gL~dG~~KMSKS~~~~~I~L~D~p~~i~~ 268 (373)
T 3vgj_A 198 FLNVDIC--QLGIDQRKVNMLAREYCDIKKIK-----KKPVILSHG--MLPGLLEGQEKMSKSDENSAIFMDDSESDVNR 268 (373)
T ss_dssp HTTCSEE--CCBGGGHHHHHHHHHHHHHHTCS-----CCCEEEEBC--CCCCSSTTCCSCCSSSTTCCCBTTCCHHHHHH
T ss_pred ccCCcEE--EcchhhHHHHHHHHHHHHHhCCC-----CCceEEeCC--eeecCCCCCCCCcCCCCCCeeecCCCHHHHHH
Confidence 4578865 58999999999888999999873 123445554 4766 4784 999999 579988654455544
Q ss_pred HHHH
Q 014355 412 RSKA 415 (426)
Q Consensus 412 ~a~~ 415 (426)
..+.
T Consensus 269 KI~k 272 (373)
T 3vgj_A 269 KIKK 272 (373)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4433
No 66
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=91.41 E-value=0.11 Score=52.16 Aligned_cols=64 Identities=9% Similarity=0.112 Sum_probs=46.3
Q ss_pred EeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCc-ccccc-CCCceeHHHHHHHHHHHHHH
Q 014355 344 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTR-FSEVVRLVDLLDEAKNRSKA 415 (426)
Q Consensus 344 V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~-kmSkR-~G~~v~L~dLlde~~~~a~~ 415 (426)
-+|.||..|+.--..+++.+|+. .+...|.+ ++.+-+|. ||||+ .|+.|.|.|=-+++....++
T Consensus 229 pvG~DQ~~hl~l~Rdla~r~n~~------~p~~l~~~--~l~gLdG~~KMSKSd~~~~I~L~D~p~~i~kKI~k 294 (386)
T 3hzr_A 229 LDSIKNVQFHSIIDQIATTLNFI------QPTVLFHK--MVPLLSGVTKFDIPSDHNSILLSDNAKQVERKINK 294 (386)
T ss_dssp EEEGGGHHHHHHHHHHHHHHTCC------CCEEEEEC--CCCCTTCTTCCCCCCTTTSCBTTCCHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHcCCC------CceEeecC--eeeCCCCCCccCcCCCCCeeecCCCHHHHHHHHHH
Confidence 35999999999888999999983 23344554 47776775 99999 79999886644454444433
No 67
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=91.24 E-value=0.14 Score=51.60 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=48.5
Q ss_pred EEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC--ccccccC-CCceeHHHHHHHHHHHHHH
Q 014355 341 IIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRF-SEVVRLVDLLDEAKNRSKA 415 (426)
Q Consensus 341 ~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g--~kmSkR~-G~~v~L~dLlde~~~~a~~ 415 (426)
.+-.+|.||..|+.--..+++.+|+. .+...|.++ +.+-+| .||||+. |+.|.|.|==+++.+..+.
T Consensus 245 ~lvpvG~DQ~~~i~l~Rdla~r~~~~------~p~~l~~~~--l~gLdG~~~KMSKS~~~~~I~L~D~p~~I~kKI~k 314 (406)
T 3tze_A 245 CLVPAAVDQDPFFRLARDKAKALGEK------KPSSIYVSL--LPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIA 314 (406)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHTCC------CCEEEEECC--CCCTTSCCCCSSCSCGGGSCBTTCCHHHHHHHHHH
T ss_pred eEEeeccchHHHHHHHHHHHHHcCCC------CceeeccCc--ccCCCCCCcCCCCCCCCCcccCCCCHHHHHHHHHh
Confidence 33358999999998888999999984 244556544 777778 6999998 6899886655555544443
No 68
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=90.75 E-value=0.076 Score=53.38 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=47.5
Q ss_pred EeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC--ccccccCCC-ceeHHHHHHHHHHHHHH
Q 014355 344 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDEAKNRSKA 415 (426)
Q Consensus 344 V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g--~kmSkR~G~-~v~L~dLlde~~~~a~~ 415 (426)
.+|.||..|+..-..+++.+|+. .+...|.+ ++.+-+| +||||+.+| .|.|.|==+++....++
T Consensus 212 pvG~DQ~~hl~l~Rdla~r~n~~------~p~~l~~~--~l~gLdG~~~KMSKS~~ns~I~L~D~p~~I~kKI~k 278 (392)
T 3jxe_A 212 PAAIDQDPYWRLQRDFAESLGYY------KTAALHSK--FVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWK 278 (392)
T ss_dssp EEEGGGHHHHHHHHHHTGGGTSC------CCEEEEEC--CCCCSSCSSSCCCTTSGGGCCBTTCCHHHHHHHHHT
T ss_pred ecccchHHHHHHHHHHHHHcCCC------CCeeeecc--cccCCCCCccccccCCCCCeeeCCCCHHHHHHHHHh
Confidence 79999999998888999999973 24455554 4766667 599999998 89886555555555444
No 69
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=90.69 E-value=0.087 Score=53.02 Aligned_cols=66 Identities=23% Similarity=0.332 Sum_probs=38.5
Q ss_pred EEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC--ccccccCCCceeHHHHHHHHHHHHHH
Q 014355 342 IYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSEVVRLVDLLDEAKNRSKA 415 (426)
Q Consensus 342 i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g--~kmSkR~G~~v~L~dLlde~~~~a~~ 415 (426)
+-.+|.||..|+..-..+++.+|+. .+...|.++ +.+-+| .||||+.|+.|.|.|=-+++....++
T Consensus 227 lvp~G~DQ~~~i~l~Rdla~r~~~~------~p~~l~~~~--l~gLdG~~~KMSKS~~~~I~L~D~p~~i~kKI~k 294 (395)
T 3i05_A 227 LIPQAIDQDPYFRLTRDIAPRLGYL------KPAVIHSKF--FPGLSGPKGKMSSSSGTAVLLTDTEKMVKDKINK 294 (395)
T ss_dssp EEEEEGGGHHHHHHHHHTHHHHTCC------CCEEEEECC--CCCC-------------CCBTTCCHHHHHHHHC-
T ss_pred EEEeccchHHHHHHHHHHHHHcCCC------Cceeecccc--ccCCCCCcccCCCCCCCcccCCCCHHHHHHHHHh
Confidence 3468999999998888999999983 234556544 776677 69999999999986655555554433
No 70
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=90.68 E-value=0.075 Score=52.16 Aligned_cols=78 Identities=14% Similarity=0.083 Sum_probs=49.8
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCC-CCCCCCCCcEEEE-EeEEEEcCCC--ccccccCCC-c--eeHHHHHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTYPKASHV-GFGLVLGEDG--KRLRTRFSE-V--VRLVDLLD 407 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~-~~~~~~~~~~~Hv-~~g~v~~~~g--~kmSkR~G~-~--v~L~dLld 407 (426)
.+++|.++ +|.||..|+..-..+++.++.. .+ -...+...+. ...++.+-+| +||||+.|| . |.|.|=-+
T Consensus 135 ~~~~~~vp--vG~DQ~~~iel~Rdia~r~n~~yg~-~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~ 211 (328)
T 1i6k_A 135 LYNTDIVP--VGEDQKQHIELTRDLAERFNKRYGE-LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAK 211 (328)
T ss_dssp TTTCSEEE--CCGGGHHHHHHHHHHHHHHHHHHCS-CCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHH
T ss_pred HhCCCEEe--cccchHHHHHHHHHHHHHhCccccc-ccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHH
Confidence 46787774 9999999998888888877620 00 0011222221 0123556667 899999999 7 98877666
Q ss_pred HHHHHHHH
Q 014355 408 EAKNRSKA 415 (426)
Q Consensus 408 e~~~~a~~ 415 (426)
++.+..+.
T Consensus 212 ~i~~KI~~ 219 (328)
T 1i6k_A 212 TIEKKIKS 219 (328)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66555544
No 71
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=90.57 E-value=0.086 Score=52.21 Aligned_cols=74 Identities=16% Similarity=0.177 Sum_probs=46.9
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcC--CCCCCCCCCCcEEEEEeEEEEcCCCc-cccccCCCceeHHHHHHHHHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAG--WLSADDSTYPKASHVGFGLVLGEDGK-RLRTRFSEVVRLVDLLDEAKN 411 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg--~~~~~~~~~~~~~Hv~~g~v~~~~g~-kmSkR~G~~v~L~dLlde~~~ 411 (426)
.+++|.+ ++|.||..|+..-..+++.++ |.+ --..+...+...-++.+-+|. ||||+.||.|.|.|==+++..
T Consensus 160 ~~~~~~v--pvG~DQ~~hi~l~rdia~r~n~~yg~--~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~p~~i~~ 235 (351)
T 1yi8_B 160 AFGATLV--PVGDDQLPMLEQTREIVRRFNALYAP--VLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGDSADEVAR 235 (351)
T ss_dssp HHTCSEE--EECGGGHHHHHHHHHHHHHHHHHTCS--CSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTCCHHHHHH
T ss_pred hcCCCEE--EecCCcHHHHHHHHHHHHHHHhhccc--ccCCCeeeeecCccccCCCCccccCCCCCCeecCCCCHHHHHH
Confidence 3677777 499999999998788887653 110 001232222112347667886 999999999988664444443
Q ss_pred H
Q 014355 412 R 412 (426)
Q Consensus 412 ~ 412 (426)
.
T Consensus 236 K 236 (351)
T 1yi8_B 236 K 236 (351)
T ss_dssp H
T ss_pred H
Confidence 3
No 72
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=90.45 E-value=0.068 Score=52.89 Aligned_cols=77 Identities=12% Similarity=0.093 Sum_probs=49.0
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCC-CCCCCCCCcEEEEE-eEEEEcCCC--ccccccCCC---ceeHHHHHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTYPKASHVG-FGLVLGEDG--KRLRTRFSE---VVRLVDLLD 407 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~-~~~~~~~~~~~Hv~-~g~v~~~~g--~kmSkR~G~---~v~L~dLld 407 (426)
.+++|.++ +|.||..|+..-..+++.++.. .+ -...+...|.. ..+|.+-+| +||||+.|| +|.|.|==+
T Consensus 145 ~~~a~~vp--vG~DQ~~~lel~Rdia~r~n~~yg~-~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~ 221 (348)
T 2yy5_A 145 LYQPDIVP--VGNDQKQHLELTRDLAQRIQKKFKL-KLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKE 221 (348)
T ss_dssp TTCCSEEE--CCGGGHHHHHHHHHHHHHHHHHHCC-CCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHH
T ss_pred HhCccEEE--ecccHHHHHHHHHHHHHHhhhhccc-ccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHH
Confidence 47888774 9999999998888888877510 00 00123333311 123555566 799999999 898876555
Q ss_pred HHHHHHH
Q 014355 408 EAKNRSK 414 (426)
Q Consensus 408 e~~~~a~ 414 (426)
++.+..+
T Consensus 222 ~i~~KI~ 228 (348)
T 2yy5_A 222 VVVKKIR 228 (348)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 73
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=88.00 E-value=0.22 Score=50.86 Aligned_cols=64 Identities=19% Similarity=0.209 Sum_probs=46.0
Q ss_pred EeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCc--cccccCCC-ceeHHHHHHHHHHHHHH
Q 014355 344 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK--RLRTRFSE-VVRLVDLLDEAKNRSKA 415 (426)
Q Consensus 344 V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~--kmSkR~G~-~v~L~dLlde~~~~a~~ 415 (426)
.+|.||..|+..-+.+++.+|+. .+.+.|.++ +.+-+|. ||||+.+| .|.|.|==+++....+.
T Consensus 292 PvG~DQ~~hlel~Rdia~rfn~~------~p~~~~~~~--l~gLdG~~~KMSKS~~ns~I~l~D~p~~I~kKI~k 358 (451)
T 3foc_A 292 ASGIEQDPYFRLARDLAPRMGHP------KNAYLLGKF--LPGLQGSGTKMSASDPNSAIYLTDTPAQIKNKINR 358 (451)
T ss_dssp EECTTTHHHHHHHHHHTTTTTSC------CCEEEEECC--CCBTTBTTCCCCTTCGGGSCBTTCCHHHHHHHHHH
T ss_pred eeecchHHHHHHHHHHHHHhCCC------CCeeecCCc--ccCCCCCCCccCCCCCCCeeeecCCHHHHHHHHhh
Confidence 57999999998888999988873 234556544 6666664 99999987 78875544555544444
No 74
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=85.84 E-value=0.24 Score=48.64 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=27.8
Q ss_pred ecCCCcCCCccchhHHHHHHHHHHHHHHHHCC-CeeEEecccCCc
Q 014355 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSN-VEVLRRNHVGDW 177 (426)
Q Consensus 134 ~~SpNp~~plHiGHlRsaiiGD~Larll~~~G-~~V~~~~yv~D~ 177 (426)
|++--|||+||+||...++ --+.+ |+..| |+| ...|+||
T Consensus 5 y~G~~PTg~lHlGh~~g~l--~~~~~-lQ~~G~~~~--~~~IaD~ 44 (337)
T 2el7_A 5 LSGIQPSGEIHIGNYLGAI--KQWVA-IGEKLGRDA--FFCIVDY 44 (337)
T ss_dssp EEEECSCSCCBHHHHHTHH--HHHHH-HHHHHGGGE--EEEECGG
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHH-HHhcCCCCE--EEEEeCc
Confidence 6777899999999988764 22233 35568 887 5667775
No 75
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=85.27 E-value=0.71 Score=45.96 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=46.5
Q ss_pred eEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccC-CCceeHHHHHHHHHHH
Q 014355 340 WIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF-SEVVRLVDLLDEAKNR 412 (426)
Q Consensus 340 ~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~-G~~v~L~dLlde~~~~ 412 (426)
..+--+|.||..|+..-+.+++.+|.... ...+...|..+ +.+-+|.||||+. ++.|.|.|==+++.+.
T Consensus 209 a~~VPVG~DQ~~hleltRdiA~rfn~~~~--~~~P~~~~~~~--~pgldG~KmS~S~~ns~I~l~D~p~~i~kK 278 (372)
T 3a04_A 209 HVVVPVGADQDPHLRLTRDLADRMAGVVE--LERPASTYHKL--QPGLDGRKMSSSRPDSTIFLTDPPEVARNK 278 (372)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHHHTTTTSC--CCCCEEEEECC--CBCTTSSBCCTTSGGGSCBTTCCHHHHHHH
T ss_pred ceecccchhhHHHHHHHHHHHHHhcCccc--ccChhhhhhcc--cCCCCCCccCCCCCCcccccCCCHHHHHHH
Confidence 33446899999999988999998873211 12345666644 7778899999987 5578775544444433
No 76
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=85.16 E-value=0.42 Score=47.66 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=49.1
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCC---CCCCCcEEEEEeEEEEcCCC------------------cccc
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSAD---DSTYPKASHVGFGLVLGEDG------------------KRLR 393 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~---~~~~~~~~Hv~~g~v~~~~g------------------~kmS 393 (426)
.+++|.+. +|.||..|+.--..+++.+++.++. ....+...|. .++.+-+| +|||
T Consensus 178 ~~~~~~vp--~G~DQ~~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~--~~l~gL~g~~~~~~~~~~~~~~~~~~~KMS 253 (375)
T 2cyc_A 178 YQGVTIAH--AGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHH--HLLLGLQEPPKWPIESEEEFKEIKAQMKMS 253 (375)
T ss_dssp HTTCSEEE--EEGGGHHHHHHHHHHGGGCSSSCEEETTEEECCEEEEE--CCCBCSSCCSSSSCCSHHHHHHHHHHHBGG
T ss_pred HhCCCeec--ccchHHHHHHHHHHHHHHhCCcccccccccCccEEecc--ccccCCCCcccccccchhhhhhhhhhhccc
Confidence 36777765 9999999998888888888761000 0002334444 44776666 7999
Q ss_pred ccC-CCceeHHHHHHHHHHHH
Q 014355 394 TRF-SEVVRLVDLLDEAKNRS 413 (426)
Q Consensus 394 kR~-G~~v~L~dLlde~~~~a 413 (426)
|+. ++.|.|.|==+++....
T Consensus 254 KS~~~~~I~L~d~p~~i~~KI 274 (375)
T 2cyc_A 254 KSKPYSAVFIHDSPEEIRQKL 274 (375)
T ss_dssp GSCGGGSCBTTCCHHHHHHHH
T ss_pred CCCCCCeeccCCCHHHHHHHH
Confidence 998 78898865444444433
No 77
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=77.43 E-value=0.75 Score=44.94 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=27.6
Q ss_pred ecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 134 ~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
||+--|||.||+||...++ --+.+ |+. ||++ .+.|+||
T Consensus 5 ysG~~PTG~lHlGn~vg~l--~~~~~-lQ~-g~~~--~~~IaD~ 42 (328)
T 1i6k_A 5 FSGIQPSGVITIGNYIGAL--RQFVE-LQH-EYNC--YFCIVDQ 42 (328)
T ss_dssp EEEECCCSCCBHHHHHHTH--HHHHH-HTT-TSEE--EEEECHH
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHH-HHc-CCcE--EEEEeCc
Confidence 6788899999999998776 22223 344 8886 5678885
No 78
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=75.30 E-value=0.7 Score=46.27 Aligned_cols=75 Identities=13% Similarity=0.109 Sum_probs=45.7
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEe-----EEEEc-CCC-ccccccC---CCceeHHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGF-----GLVLG-EDG-KRLRTRF---SEVVRLVD 404 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~-----g~v~~-~~g-~kmSkR~---G~~v~L~d 404 (426)
.+++|.+. +|.||..|+..-+.+++.+|..-. ..+ ..+-++ .+|.+ .+| +||||+. |+.|.|.|
T Consensus 169 ~~~ad~vP--vG~DQ~~hleltRdia~rfn~~y~-~~f---~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D 242 (388)
T 3prh_A 169 LYGTDLVP--PGEDQKQHLELTRNLAERFNKKYN-DIF---TIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLD 242 (388)
T ss_dssp TTTCCEEC--CCSSCHHHHHHHHHHHHHHHHHTC-SCC---CCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTC
T ss_pred HhCCCEEE--echhHHHHHHHHHHHHHHhCcccC-CCc---ccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCC
Confidence 46777764 999999999988899988874100 001 111111 11222 244 6999999 89999865
Q ss_pred HHHHHHHHHHH
Q 014355 405 LLDEAKNRSKA 415 (426)
Q Consensus 405 Llde~~~~a~~ 415 (426)
==+++.+..+.
T Consensus 243 ~p~~I~kKI~k 253 (388)
T 3prh_A 243 EPKQLEKKIKS 253 (388)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHhh
Confidence 54555544433
No 79
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=71.86 E-value=1.1 Score=44.28 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=27.3
Q ss_pred EecCCCcCCCccchhHHHHHHHHHHHHH--HHHCCCeeEEecccCCch
Q 014355 133 DFSSPNIAKEMHVGHLRSTIIGDSLARM--LEFSNVEVLRRNHVGDWG 178 (426)
Q Consensus 133 E~~SpNp~~plHiGHlRsaiiGD~Larl--l~~~G~~V~~~~yv~D~G 178 (426)
=|++--|||+||+||+..++ .++ |+.. |+| .+.|+||=
T Consensus 25 vysG~~PTG~lHLGn~~g~l-----~~~~~lQ~~-~~~--~~~IaD~h 64 (351)
T 1yi8_B 25 VLTGDRPTGALHLGHLAGSL-----QNRVRLQDE-AEL--FVLLADVQ 64 (351)
T ss_dssp EEEEECCSSCCBHHHHHHTH-----HHHHHHTSS-SEE--EEEECHHH
T ss_pred EEEeeCCCCCccHHHHHHHH-----HHHHHHHHh-CCe--EEEEecch
Confidence 37888999999999988764 333 4433 665 66788873
No 80
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=71.73 E-value=0.89 Score=44.80 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=44.6
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcC--CCCCCCCC-CCc-EE--EEEeEEEEcC-CC-ccccccCC---CceeHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAG--WLSADDST-YPK-AS--HVGFGLVLGE-DG-KRLRTRFS---EVVRLV 403 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg--~~~~~~~~-~~~-~~--Hv~~g~v~~~-~g-~kmSkR~G---~~v~L~ 403 (426)
.+++|.+. +|.||..|+..-+.+++.+| |.+ .+ .+. +. |. .++.+- +| +||||+.+ +.|.|.
T Consensus 150 ~~~ad~vp--vG~DQ~~hleltRdia~rfn~~yg~---~f~~p~~li~~~~--~~l~gL~dg~~KMSKS~~~~~~~I~L~ 222 (346)
T 3n9i_A 150 LYQTNQVP--VGEDQKQHLELSRDIASRFNNLYGD---IFKIPEPFIPKAG--ARVMSLQDPTKKMSKSDDNRNNVIELL 222 (346)
T ss_dssp TTTCSEEC--CCGGGHHHHHHHHHHHHHHHHHHSS---CSCCCEECCCCCC--CCCBCSSCTTSBCCTTCSCGGGCCBTT
T ss_pred HhCceEEE--eccchHHHHHHHHHHHHHhccccCC---cccccchhccCCc--ccCccCCCCccccCCCCCCCCceecCC
Confidence 45777664 89999999998888988877 310 01 011 10 11 123332 56 49999987 688886
Q ss_pred HHHHHHHHHHH
Q 014355 404 DLLDEAKNRSK 414 (426)
Q Consensus 404 dLlde~~~~a~ 414 (426)
|=-+++.+..+
T Consensus 223 D~p~~i~kKI~ 233 (346)
T 3n9i_A 223 EDPKSVVKKIK 233 (346)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 54455544443
No 81
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=70.89 E-value=0.67 Score=45.58 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=45.4
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcC--CCCCCCCC-CCc-EEEEEeEEEEcC-CC-ccccccC---CCceeHHHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAG--WLSADDST-YPK-ASHVGFGLVLGE-DG-KRLRTRF---SEVVRLVDL 405 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg--~~~~~~~~-~~~-~~Hv~~g~v~~~-~g-~kmSkR~---G~~v~L~dL 405 (426)
.+++|.+ .+|.||..|+..-+.+++.++ |..+.+.+ .+. +.+-...++.+- +| +||||+. |+.|.|.|=
T Consensus 141 ~~~ad~v--pvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~ 218 (341)
T 3sz3_A 141 LYGAHQV--PVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLED 218 (341)
T ss_dssp TTTCSEE--CCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCC
T ss_pred HcCCCEE--EeccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCC
Confidence 4577766 489999999988888888776 31000011 011 111001123333 56 5999999 789988655
Q ss_pred HHHHHHHHH
Q 014355 406 LDEAKNRSK 414 (426)
Q Consensus 406 lde~~~~a~ 414 (426)
-+++.+..+
T Consensus 219 p~~i~kKI~ 227 (341)
T 3sz3_A 219 PKSIIKKIN 227 (341)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 555554443
No 82
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=70.42 E-value=2.2 Score=42.26 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=25.7
Q ss_pred ecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 134 ~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
|++--|||+||+|| ..++ -.+. -|+..||+| ...|+||
T Consensus 39 y~G~~PTg~lHlG~-l~~l--~~~~-~lQ~~G~~~--~~~iaD~ 76 (364)
T 2cya_A 39 YIGYEPSGVAHIGW-LVWM--YKVK-DLVEAGVDF--SVLEATW 76 (364)
T ss_dssp EEEECCCSSCBTHH-HHHH--HHHH-HHHHTTCEE--EEEECHH
T ss_pred EeccCCCCCccHhH-HHHH--HHHH-HHHHCCCCE--EEEEeCc
Confidence 77788999999999 4443 2233 344569876 5566775
No 83
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=68.42 E-value=1.3 Score=43.20 Aligned_cols=38 Identities=8% Similarity=0.247 Sum_probs=26.6
Q ss_pred ecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 134 ~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
||+--|||.||+||.-.++.- +.++ .. ||++ .+.|+||
T Consensus 7 ysG~~PTg~lHlG~~lg~l~~--~~~l-Q~-g~~~--~~~iaD~ 44 (322)
T 3tzl_A 7 LTGLQPSGDLHIGNYFGAIKQ--MVDA-QE-KSQM--FMFIANY 44 (322)
T ss_dssp EEEECCSSCCBHHHHHHTHHH--HHHT-TT-TSCC--EEEECHH
T ss_pred EEccCCCccccHHHHHHHHHH--HHHH-hc-CCCE--EEEEecC
Confidence 677889999999998765532 3443 33 8877 4556776
No 84
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=67.33 E-value=3.7 Score=41.40 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=26.4
Q ss_pred EecCCCcCCC-ccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 133 DFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 133 E~~SpNp~~p-lHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
=||+--|||+ ||+||+- .+ -.+ +-|...||++.. .|+||
T Consensus 33 iy~G~dPTg~sLHlGh~v-~l--~~l-~~lQ~~G~~~i~--lIgd~ 72 (419)
T 2ts1_A 33 LYCGFDPTADSLHIGHLA-TI--LTM-RRFQQAGHRPIA--LVGGA 72 (419)
T ss_dssp EEEEECCSSSSCBGGGHH-HH--HHH-HHHHHTTCEEEE--EECTT
T ss_pred EEEeeCCCCCCccHHHHH-HH--HHH-HHHHHCCCcEEE--EEcCc
Confidence 4889999999 9999965 22 223 345567998754 34444
No 85
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=67.24 E-value=3.4 Score=40.07 Aligned_cols=38 Identities=16% Similarity=0.319 Sum_probs=26.0
Q ss_pred ecCCCcCCC-ccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 134 FSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 134 ~~SpNp~~p-lHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
|++--|||+ ||+||.- ++. . .+-|...||++. +.|+||
T Consensus 37 y~G~~PTg~slHlGh~l-~l~--~-~~~lQ~~g~~~~--~~i~D~ 75 (322)
T 2yxn_A 37 VCGFDPTADSLHLGHLV-PLL--C-LKRFQQAGHKPV--ALVGGA 75 (322)
T ss_dssp EEEECCSSSSCBHHHHH-HHH--H-HHHHHHTTCEEE--EEECTT
T ss_pred EEeecCCCCcccHHHHH-HHH--H-HHHHHHcCCcEE--EEEccc
Confidence 899999999 9999965 222 2 334456698864 445554
No 86
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=65.97 E-value=3 Score=41.39 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=27.3
Q ss_pred ecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 134 ~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
|++--|||+||+||.-.+ .-.+.+...|++|. +.|.||
T Consensus 74 ~sG~~PTG~lHLGhyv~~----~~~~~lq~~~~~~~--~~IaD~ 111 (372)
T 3a04_A 74 LTGFMPSGKFHFGHKLTV----DQLIYLQKNGFKVF--VAIADA 111 (372)
T ss_dssp EEEECCCSCCBHHHHHHH----HHHHHHHHTTCEEE--EEECHH
T ss_pred EeCcCCCcHhHHHHHHHH----HHHHHHHhCCCeEE--EEEecc
Confidence 688899999999996532 23445555799884 557776
No 87
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=65.56 E-value=4 Score=40.48 Aligned_cols=40 Identities=13% Similarity=0.339 Sum_probs=26.5
Q ss_pred EecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 133 DFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 133 E~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
=|++--|||.||+|| .++-....+-|...||+|+ +.|+||
T Consensus 59 iy~G~~PTg~lHlG~---gvl~~~~~~~lQ~~G~~~~--~lIaD~ 98 (373)
T 3vgj_A 59 CYDGFEPSGRMHIAQ---GLLKSIIVNKLTSNGCTFI--FWIADW 98 (373)
T ss_dssp EEEEECCCSSCBHHH---HHHHHHHHHHHHTTTCEEE--EEECHH
T ss_pred EEeCCCCCCCceehh---hHHHHHHHHHHHHCCCcEE--EEEecc
Confidence 378889999999999 2333322344566788765 456665
No 88
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=65.53 E-value=3.6 Score=41.14 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=24.6
Q ss_pred EecCCCcCCC-ccchhHHHHHHHHHHHHHHHHCCCeeEEe
Q 014355 133 DFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRR 171 (426)
Q Consensus 133 E~~SpNp~~p-lHiGHlRsaiiGD~Larll~~~G~~V~~~ 171 (426)
=||+--|||+ |||||+- ++. .+.++ ...||++...
T Consensus 67 vy~G~dPTg~sLHlGhlv-~l~--~l~~l-Q~~G~~~~~l 102 (392)
T 1y42_X 67 AYVGIDPTAPSLHVGHLL-PLM--PLFWM-YLEGYKAFTL 102 (392)
T ss_dssp EEEEECCCSSSCBGGGHH-HHH--HHHHH-HHHTCEEEEE
T ss_pred EEEeecCCCCCccHHHHH-HHH--HHHHH-HHcCCcEEEE
Confidence 3889999999 9999976 322 34444 4559987543
No 89
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=65.52 E-value=3.9 Score=41.26 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=26.4
Q ss_pred EecCCCcCCC-ccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 133 DFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 133 E~~SpNp~~p-lHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
=||+--|||+ ||+||+- .+ -.+ +-|...||++.. .|+||
T Consensus 35 iy~G~dPTg~sLHlGh~v-~l--~~~-~~lQ~~G~~~~~--lIgd~ 74 (420)
T 1jil_A 35 LYCGADPTADSLHIGHLL-PF--LTL-RRFQEHGHRPIV--LIGGG 74 (420)
T ss_dssp EEEEECCSSSSCBHHHHH-HH--HHH-HHHHHTTCEEEE--EECTT
T ss_pred EEEeeCCCCCCccHHHHH-HH--HHH-HHHHHCCCcEEE--EEcCc
Confidence 4889999999 9999965 22 223 345557998754 34443
No 90
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=65.44 E-value=3.6 Score=41.05 Aligned_cols=41 Identities=22% Similarity=0.131 Sum_probs=29.3
Q ss_pred EEecCCCcCCCccchhHHHHHHHHHHHHHHHH-CCCeeEEecccCCch
Q 014355 132 VDFSSPNIAKEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDWG 178 (426)
Q Consensus 132 VE~~SpNp~~plHiGHlRsaiiGD~Larll~~-~G~~V~~~~yv~D~G 178 (426)
.=|++--|||+||+||.-.+. +.|.|.. .|..|.-. |+|+.
T Consensus 84 ~vysG~~PTG~lHLGh~v~~~----~~~~lQ~~~g~~v~i~--I~D~~ 125 (386)
T 3hzr_A 84 FIFIQKYPQKEVALEEYITLE----FARYLQDAFNIQVIIQ--ILDDI 125 (386)
T ss_dssp EEEEEECCCSSCBGGGHHHHH----HHHHHHHHHCCEEEEE--ECHHH
T ss_pred EEEeccCCCCCccHHHHHHHH----HHHHHHHhcCCeEEEE--eCchH
Confidence 347889999999999965542 3344554 48877766 88875
No 91
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=63.66 E-value=5.5 Score=39.08 Aligned_cols=39 Identities=10% Similarity=0.202 Sum_probs=25.9
Q ss_pred ecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 134 ~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
|++--|||.||+||.-.++ -.+.+ |...||++ ...|+||
T Consensus 44 y~G~~PTg~lHlGhyl~~l--~~~~~-lQ~~G~~~--~~~i~D~ 82 (348)
T 2j5b_A 44 YNGFEPSGRIHIAQALITV--MNTNN-MIECGGQM--IIYIADW 82 (348)
T ss_dssp EEEECCCSSCBHHHHHHHH--HHHHH-HHHTTEEE--EEEECHH
T ss_pred EeccCCCCCCchhHHHHHH--HHHHH-HHHcCCcE--EEEeccc
Confidence 8999999999999922221 23333 34458765 4667776
No 92
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=60.58 E-value=2.1 Score=42.09 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=26.8
Q ss_pred ecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 134 ~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
|++--|||.||+||...++ --.. -|+. ||++ .+.|.||
T Consensus 8 ~sG~~PTG~lHLGn~vg~l--~~~~-~lQ~-~~~~--~~~IaD~ 45 (348)
T 2yy5_A 8 LTGIQASGKQHLGNYLGVM--QSLI-ELQE-QCQL--FVFVADL 45 (348)
T ss_dssp EEEECCCTTCBHHHHHHTG--GGHH-HHHH-HSEE--EEEECHH
T ss_pred EEeeCCCCcccHHHHHHHH--HHHH-HHHh-CCcE--EEEEcCh
Confidence 7888899999999988765 1112 2454 7775 5667775
No 93
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=59.97 E-value=5.6 Score=39.16 Aligned_cols=39 Identities=26% Similarity=0.421 Sum_probs=25.9
Q ss_pred EecCCCcCCC-ccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 133 DFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 133 E~~SpNp~~p-lHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
=|++--|||+ ||+||+- ++. .+.+ |...||+|.. .|+||
T Consensus 49 vy~G~~PTg~sLHLGhl~-~l~--~~~~-lQ~~G~~~~~--lIaD~ 88 (356)
T 2pid_A 49 IYCGFDPTADSLHVGHLL-ALL--GLFH-LQRAGHNVIA--LVGGA 88 (356)
T ss_dssp EEEEECCSSSSCBHHHHH-HHH--HHHH-HHHTTCEEEE--EECTT
T ss_pred EEEeecCCCCcccHHHHH-HHH--HHHH-HHHCCCcEEE--EEccc
Confidence 3899999998 9999944 333 2333 4456988754 45554
No 94
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=59.45 E-value=7.5 Score=30.06 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHhc-CCCCCCCccccc-cc---CC--CCccccchhhHHHHHhhcCCCCCCCChHHHHHHHHHh
Q 014355 10 NVKRELEKVFDLALKAT-VPNETDVRPLIA-AC---TA--KFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKN 79 (426)
Q Consensus 10 ~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~-~~---~~--~~GD~~t~~a~~lak~~k~~~~~~~~P~~iA~~l~~~ 79 (426)
.+++.|.+.|..+++.. +|.. +...++. .| .. +.||.+.. |+.+.|.++...-..+++.++|..|+++
T Consensus 7 ~~~~ei~~qi~~a~~~a~FPI~-s~~EL~~AlP~G~~t~c~~Gd~~~t-a~El~kll~~~DFP~ksA~~lAd~iv~r 81 (84)
T 1iio_A 7 GVKEDIRGQIIGALAGADFPIN-SPEELMAALPNGPDTTCKSGDVELK-ASDAGQVLTADDFPFKSAEEVADTIVNK 81 (84)
T ss_dssp SHHHHHHHHHHHHHTTSSSTTB-HHHHHHHHCTTSSCCCCCBTTBCCC-TTTTGGGSCGGGSBCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCC-CHHHHHHhCCCCCCCceeeCCEeee-HHHHHhhCCcccCCCCCHHHHHHHHHHH
Confidence 68888998888888753 3321 1111121 12 22 45998776 7899988865545568999999998865
No 95
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=57.62 E-value=7.6 Score=39.27 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=26.4
Q ss_pred EecCCCcCCC-ccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 133 DFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 133 E~~SpNp~~p-lHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
=||+--|||| ||+||+- ++. .+. -|...||++. +.|+||
T Consensus 35 iy~G~dPTg~sLHLGhlv-~l~--~l~-~lQ~~G~~~i--~lIgD~ 74 (432)
T 2jan_A 35 VYAGFDPTAPSLHAGHLV-PLL--TLR-RFQRAGHRPI--VLAGGA 74 (432)
T ss_dssp EEEEECCSSSSCBGGGHH-HHH--HHH-HHHHTTCEEE--EEECHH
T ss_pred EEEeeCCCCCCcCHHHHH-HHH--HHH-HHHHCCCcEE--EEEcCc
Confidence 3889999997 9999954 222 244 4445698864 446665
No 96
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=57.01 E-value=2.8 Score=41.14 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=26.4
Q ss_pred EecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 133 DFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 133 E~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
=|++--|||+||+||.-.++ .-+..+-+ ||+| .+.|.||
T Consensus 9 v~sG~~PTG~lHLGhy~g~l--~~~~~lQ~--~~~~--~~~iaD~ 47 (341)
T 3sz3_A 9 VLSGVQPSGELSIGNYLGAL--RQWQQMQD--DYDC--QYCVVDL 47 (341)
T ss_dssp EEEEECSSSCCBHHHHHHTG--GGHHHHHH--HSEE--EEEECHH
T ss_pred EEeCcCCCCcccHHHHHHHH--HHHHHHHh--cCeE--EEEEecc
Confidence 36788999999999976654 22333333 5665 4668886
No 97
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=52.47 E-value=8.5 Score=38.89 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=27.1
Q ss_pred EecCCCcCCC-ccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhH
Q 014355 133 DFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQ 180 (426)
Q Consensus 133 E~~SpNp~~p-lHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q 180 (426)
=|++--|||+ ||+||+- .+ -.+.+ |...||+| ...|+||=..
T Consensus 40 vy~G~dPTg~sLHlGh~v-~l--~~l~~-lQ~~G~~~--i~lIgD~ta~ 82 (432)
T 1h3f_A 40 VKLGADPTRPDLHLGHAV-VL--RKMRQ-FQELGHKV--VLIIGDFTGM 82 (432)
T ss_dssp EEEEECTTCCSCBHHHHH-HH--HHHHH-HHHTTCEE--EEEECCCC--
T ss_pred EEEcccCCCCCCchhhHH-HH--HHHHH-HHHCCCCE--EEEEccceEE
Confidence 3789999997 9999965 21 23333 44569875 5567776433
No 98
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=47.46 E-value=5.3 Score=39.82 Aligned_cols=39 Identities=13% Similarity=0.103 Sum_probs=26.3
Q ss_pred EecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 133 DFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 133 E~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
=|++--|||+||+||.-.++- -. +-|.. ||+| .+.|.||
T Consensus 38 i~sG~~PTG~lHLGhyvGal~--~~-~~LQ~-~~~~--~~~IaD~ 76 (388)
T 3prh_A 38 IFSGIQPSGSVTLGNYIGAMK--QF-VELQH-DYNS--YFCIVDQ 76 (388)
T ss_dssp EEEEECCCSCCBHHHHHHTHH--HH-HHTTT-TSEE--EEEECHH
T ss_pred EEEeeCCCCcchHHHHHHHHH--HH-HHHHc-cCcE--EEEEecc
Confidence 378899999999999765542 11 12333 8876 4567886
No 99
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=46.51 E-value=11 Score=37.72 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=27.5
Q ss_pred EecCCCcCCCccchhHHHHHHHHHHHHHHHH-CCCeeEEecccCCc
Q 014355 133 DFSSPNIAKEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 177 (426)
Q Consensus 133 E~~SpNp~~plHiGHlRsaiiGD~Larll~~-~G~~V~~~~yv~D~ 177 (426)
=|++--|||.||+||.-.++ +.|.|+. .|++|.. .|.||
T Consensus 76 i~sG~~PTG~lHLGh~v~~~----~~~~lQ~~~g~~~~i--~IaD~ 115 (392)
T 3jxe_A 76 LYTGRGPSGPMHIGHIIPFF----ATKWLQEKFGVNLYI--QITDD 115 (392)
T ss_dssp EEEEECCSSCCBHHHHHHHH----HHHHHHHHHCCEEEE--EECHH
T ss_pred EEeccCCCCchhHHHHHHHH----HHHHHHHhcCCceEE--Eecch
Confidence 36788899999999976554 3344554 7887664 47776
No 100
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=40.13 E-value=16 Score=36.39 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=27.6
Q ss_pred EecCCCcC-CCccchhHHHHHHHHHHHHHHHHC-CCeeEEecccCCchh
Q 014355 133 DFSSPNIA-KEMHVGHLRSTIIGDSLARMLEFS-NVEVLRRNHVGDWGT 179 (426)
Q Consensus 133 E~~SpNp~-~plHiGHlRsaiiGD~Larll~~~-G~~V~~~~yv~D~G~ 179 (426)
=|++--|| +.||+||+-.++ .+.+ |... |..|.- -|+|++.
T Consensus 77 vy~G~~PTa~~lHlGh~v~~~---~~~~-lQ~~~~~~v~i--~I~D~~~ 119 (393)
T 3hv0_A 77 LYTGRGPSSESLHVGHLVPFL---FTKY-LQDTFKVPLVI--QLTDDEK 119 (393)
T ss_dssp EEEEECCSSSSCBSTTHHHHH---HHHH-HHHHHCCCEEE--EECHHHH
T ss_pred EEeCCCCCCCCccHHHHHHHH---HHHH-HHHhcCCCeEe--eccChHH
Confidence 47888999 689999964443 2444 5555 666554 6899863
No 101
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=38.39 E-value=15 Score=36.66 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=26.9
Q ss_pred EEecCCCcCC-CccchhHHHHHHHHHHHHHHHHC-CCeeEEecccCCc
Q 014355 132 VDFSSPNIAK-EMHVGHLRSTIIGDSLARMLEFS-NVEVLRRNHVGDW 177 (426)
Q Consensus 132 VE~~SpNp~~-plHiGHlRsaiiGD~Larll~~~-G~~V~~~~yv~D~ 177 (426)
.=|++--||| .||+||+-.+ .+.|.|... |..|.-. |+|+
T Consensus 80 ~vy~G~~PTg~~lHLGh~v~~----~~~~~lQ~~~~~~v~i~--I~D~ 121 (395)
T 3i05_A 80 YLYTGRGPSSESMHMGHLIPF----MFTKWLQDSFRVPLVIQ--MTDD 121 (395)
T ss_dssp EEEEEECCCSSCCBGGGSHHH----HHHHHHHHHHTCCEEEE--ECHH
T ss_pred EEEEeecCCCccchHHHHHHH----HHHHHHHHhcCCcEEEE--Ecch
Confidence 3478889999 6999997433 233445544 7766664 7886
No 102
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=38.19 E-value=19 Score=36.79 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=27.5
Q ss_pred EEecCCCcC-CCccchhHHHHHHHHHHHHHHHH-CCCeeEEecccCCc
Q 014355 132 VDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 177 (426)
Q Consensus 132 VE~~SpNp~-~plHiGHlRsaiiGD~Larll~~-~G~~V~~~~yv~D~ 177 (426)
.=|++--|| |.|||||+-.++ +.|.|+. .|+.|+. .|+||
T Consensus 157 ~vy~G~dPTag~LHLGh~v~~~----~~~~lQ~~~g~~~ii--lI~D~ 198 (477)
T 1r6t_A 157 YLYTGRGPSSEAMHVGHLIPFI----FTKWLQDVFNVPLVI--QMTDD 198 (477)
T ss_dssp EEEEEECCCTTCCBGGGHHHHH----HHHHHHHHHTCCEEE--EECHH
T ss_pred EEEEcccCCCCCccHHHHHHHH----HHHHHHHHhCCcEEE--EEecc
Confidence 347888999 899999986654 2344554 7887654 35554
No 103
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=37.86 E-value=19 Score=36.37 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=26.6
Q ss_pred EecCCCcC-CCccchhHHHHHHHHHHHHHHHH-CCCeeEEecccCCc
Q 014355 133 DFSSPNIA-KEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 177 (426)
Q Consensus 133 E~~SpNp~-~plHiGHlRsaiiGD~Larll~~-~G~~V~~~~yv~D~ 177 (426)
=|++--|| |.||+||+-..+. .|.|+. .|+.|+ ..|+||
T Consensus 105 vy~G~dPTag~LHLGh~v~~~~----l~~lQ~~~g~~~i--~lI~D~ 145 (432)
T 2ip1_A 105 LYTGRGPSSDSMHLGHMIPFVF----TKWLQEVFDVPLV--IELTDD 145 (432)
T ss_dssp EEEEECCCSSCCBGGGHHHHHH----HHHHHHHHTCCEE--EEECHH
T ss_pred EEEeecCCCCCccHHHHHHHHH----HHHHHHHcCCeEE--EEEecc
Confidence 37888899 8999999775442 334554 788754 456674
No 104
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=35.92 E-value=22 Score=36.12 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=27.6
Q ss_pred EEecCCCcC-CCccchhHHHHHHHHHHHHHHHHC-CCeeEEecccCCch
Q 014355 132 VDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEFS-NVEVLRRNHVGDWG 178 (426)
Q Consensus 132 VE~~SpNp~-~plHiGHlRsaiiGD~Larll~~~-G~~V~~~~yv~D~G 178 (426)
.=|++--|| |.||+||+-.+ ...|.|... |..|.- -|+|+.
T Consensus 93 ~vytG~dPTagsLHLGH~v~~----~~l~~lQ~~~g~~v~I--~IgD~~ 135 (451)
T 3foc_A 93 YIYTGRGPSSGALHLGHLLPF----IFTKYLQDAFKCYVVI--QITDDE 135 (451)
T ss_dssp EEEEEECCCSSCCBHHHHHHH----HHHHHHHHHHTCEEEE--EECHHH
T ss_pred EEEecCCCCCCCccHHHHHHH----HHHHHHHHccCceEEE--EeeCcH
Confidence 347888999 88999995443 323335555 666655 589984
No 105
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=35.85 E-value=23 Score=34.98 Aligned_cols=39 Identities=18% Similarity=0.354 Sum_probs=24.7
Q ss_pred ecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 134 ~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
|++--|||.||+||.-.++ -.+.+ |...||++ ...|+||
T Consensus 37 y~G~~PTg~lHlG~yl~~l--~~~~~-lQ~~G~~~--~~~iaD~ 75 (375)
T 2cyc_A 37 YIGFEISGYIHLGTGLMAG--AKIAD-FQKAGIKT--RVFLADW 75 (375)
T ss_dssp EEEECCCSCCBHHHHHHHH--HHHHH-HHHTTCBC--EEEECHH
T ss_pred EeCCCCCCCcCchHHHHHH--HHHHH-HHHCCCcE--EEEecCc
Confidence 7788899999999932222 12233 44568875 4556665
No 106
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=34.46 E-value=22 Score=35.86 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=27.4
Q ss_pred EEecCCCcC-CCccchhHHHHHHHHHHHHHHHH-CCCeeEEecccCCc
Q 014355 132 VDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 177 (426)
Q Consensus 132 VE~~SpNp~-~plHiGHlRsaiiGD~Larll~~-~G~~V~~~~yv~D~ 177 (426)
.=|++--|| |.|||||+-..+ ..|.|+. .|+.|+ ..|+||
T Consensus 110 ~vy~G~dPTag~LHLGh~v~~~----~~~~lQ~~~G~~~i--ilIgD~ 151 (437)
T 1r6u_A 110 YLYTGRGPSSEAMHVGHLIPFI----FTKWLQDVFNVPLV--IQMTDD 151 (437)
T ss_dssp EEEEEECCCSSCCBHHHHHHHH----HHHHHHHHHTCCEE--EEECHH
T ss_pred EEEEcccCCCCCccHHHHHHHH----HHHHHHHHhCCcEE--EEEecc
Confidence 347888999 899999987544 2344554 788764 345664
No 107
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=30.56 E-value=15 Score=35.99 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=25.3
Q ss_pred EecCCCcCCCccchhHHHHHHHHHHHHH--HHHCCCeeEEecccCCc
Q 014355 133 DFSSPNIAKEMHVGHLRSTIIGDSLARM--LEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 133 E~~SpNp~~plHiGHlRsaiiGD~Larl--l~~~G~~V~~~~yv~D~ 177 (426)
=|++--|||+||+||.-.++ .++ |+. +|++ .+.|.||
T Consensus 18 i~sG~~PTG~lHLGh~vg~l-----~~~~~lQ~-~~~~--~~~iaD~ 56 (346)
T 3n9i_A 18 VFSGAQPSGELTIGNYMGAL-----RQWVQMQD-DYDC--IYCIVDL 56 (346)
T ss_dssp EEEEECSCSCCBHHHHHHTH-----HHHHTTTT-TSEE--EEEECHH
T ss_pred EEECcCCCCcccHHHHHHHH-----HHHHHHHh-hCcE--EEEEecc
Confidence 36888999999999976553 333 333 5664 4667776
No 108
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=29.20 E-value=28 Score=34.80 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=26.6
Q ss_pred EecCCCcCC-CccchhHHHHHHHHHHHHHHHHC-CCeeEEecccCCc
Q 014355 133 DFSSPNIAK-EMHVGHLRSTIIGDSLARMLEFS-NVEVLRRNHVGDW 177 (426)
Q Consensus 133 E~~SpNp~~-plHiGHlRsaiiGD~Larll~~~-G~~V~~~~yv~D~ 177 (426)
=|++--||| .||+||+-.+ .+.|.|... |..|.- -|+|+
T Consensus 104 vy~G~~PTg~~lHLGh~v~~----~~~~~lQ~~~g~~~~i--~IaD~ 144 (406)
T 3tze_A 104 LYTGRGPSSKTMHIGHTIPF----LLCKYMQDAFKIRLVI--QITDD 144 (406)
T ss_dssp EEEEECCCSSCCBGGGHHHH----HHHHHHHHHHTCCEEE--EECHH
T ss_pred EEEeeCCCCCcccHHHHHHH----HHHHHHHHhcCCcEEE--EeeCh
Confidence 478889998 7999996443 234445555 777665 46776
No 109
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=24.79 E-value=82 Score=28.39 Aligned_cols=42 Identities=10% Similarity=0.028 Sum_probs=34.8
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCC
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGD 176 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D 176 (426)
++||+|=++||++ +..|..+.+.++..++..|++|+... +.|
T Consensus 1 ~mkiLiI~gspr~-------~S~t~~l~~~~~~~l~~~g~ev~~~d-L~~ 42 (228)
T 3tem_A 1 GKKVLIVYAHQEP-------KSFNGSLKNVAVDELSRQGCTVTVSD-LYA 42 (228)
T ss_dssp CCEEEEEECCSCT-------TSHHHHHHHHHHHHHHHHTCEEEEEE-TTT
T ss_pred CCEEEEEEeCCCC-------CCHHHHHHHHHHHHHHHCCCEEEEEE-hhh
Confidence 3689999999986 45788899999999999999998775 444
No 110
>2dew_X Protein-arginine deiminase type IV; histone modification enzyme, hydrolase; 2.10A {Homo sapiens} SCOP: b.2.9.1 b.6.1.6 d.126.1.5 PDB: 2dex_X 2dey_X 3b1u_A* 3b1t_A* 2dw5_A* 3apn_A 3apm_A 1wda_A* 1wd9_A* 1wd8_A 4dkt_A*
Probab=21.30 E-value=38 Score=35.83 Aligned_cols=39 Identities=13% Similarity=0.270 Sum_probs=32.9
Q ss_pred EecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCc
Q 014355 133 DFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (426)
Q Consensus 133 E~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~ 177 (426)
++..|||-||+==|. -|+-+.+..+|+.+|++|+ ||+||
T Consensus 603 ~l~iPkP~GPvI~G~---d~lee~v~~l~~p~Gl~vt---FIDD~ 641 (671)
T 2dew_X 603 HLGIPKPFGPVINGR---CCLEEKVCSLLEPLGLQCT---FINDF 641 (671)
T ss_dssp EEEEECCCCCEETTE---EHHHHHHHHHHGGGTCEEE---EECCT
T ss_pred ceecCCCcCCccCCe---eHHHHHHHHHHhhcCCEEE---EEcCh
Confidence 566799999996664 3899999999999999986 56787
No 111
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=20.46 E-value=1.2e+02 Score=28.49 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=33.0
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEec
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRN 172 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~ 172 (426)
...||+|=+++|+|.. -|..+-+....-|+..|++|+...
T Consensus 21 ~~MKiLII~aHP~~~S-------~n~aL~~~~~~~l~~~G~eV~v~D 60 (280)
T 4gi5_A 21 QSMKVLLIYAHPEPRS-------LNGALKNFAIRHLQQAGHEVQVSD 60 (280)
T ss_dssp -CCEEEEEECCSCTTS-------HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hCCeEEEEEeCCCCcc-------HHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4568999999999742 467788999999999999999875
No 112
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=20.24 E-value=84 Score=28.83 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHH
Q 014355 150 STIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGML 184 (426)
Q Consensus 150 saiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l 184 (426)
+.+++..++.+|+..||+|.....+++....+.-|
T Consensus 18 ~~~~~~~~~~~le~~G~~Ve~~~~~g~~~~~~~al 52 (275)
T 1sw5_A 18 QYILANMIAILLEENGYKAEVKEGLGGTLVNYEAL 52 (275)
T ss_dssp HHHHHHHHHHHHHHTTCCEEECTTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCchHHHHHHH
Confidence 46778889999999999999998677765555433
Done!