Query 014355
Match_columns 426
No_of_seqs 193 out of 1921
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 10:04:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014355.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014355hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f7ua2 c.26.1.1 (A:136-483) A 100.0 2E-71 1.4E-75 556.2 25.0 286 124-420 4-301 (348)
2 d1iq0a2 c.26.1.1 (A:97-466) Ar 100.0 1.5E-64 1.1E-68 510.1 27.2 286 125-423 4-330 (370)
3 d1li5a2 c.26.1.1 (A:1-315) Cys 99.9 1.7E-27 1.2E-31 232.8 16.0 229 125-417 18-292 (315)
4 d1irxa2 c.26.1.1 (A:3-319) Cla 99.9 1.1E-26 7.9E-31 221.8 5.7 58 126-184 16-73 (317)
5 d2d5ba2 c.26.1.1 (A:1-348) Met 99.9 4.1E-22 3E-26 194.9 14.7 229 127-416 2-322 (348)
6 d1ivsa4 c.26.1.1 (A:1-189,A:34 99.9 1.4E-20 1E-24 189.6 25.9 138 124-298 30-172 (425)
7 d1pfva2 c.26.1.1 (A:4-140,A:17 99.9 4.3E-21 3.2E-25 188.6 17.2 121 128-301 2-125 (350)
8 d1ffya3 c.26.1.1 (A:1-200,A:39 99.8 6.4E-19 4.6E-23 179.8 16.9 133 126-299 46-183 (450)
9 d1ilea3 c.26.1.1 (A:1-197,A:38 99.8 9.2E-19 6.7E-23 177.4 16.9 137 127-299 37-178 (452)
10 d1iq0a3 d.67.2.1 (A:1-96) Argi 99.7 2.1E-18 1.5E-22 139.4 10.5 90 11-111 2-92 (96)
11 d1j09a2 c.26.1.1 (A:1-305) Glu 99.7 5.2E-17 3.8E-21 157.5 14.4 188 135-408 6-259 (305)
12 d1rqga2 c.26.1.1 (A:1-138,A:17 99.6 1.3E-15 9.6E-20 148.8 15.7 116 128-296 2-121 (361)
13 d1nzja_ c.26.1.1 (A:) Glutamyl 99.6 4.9E-16 3.6E-20 149.2 9.4 130 254-397 55-231 (286)
14 d1f7ua3 d.67.2.1 (A:2-135) Arg 99.5 4E-14 2.9E-18 120.4 10.1 103 6-120 29-133 (134)
15 d1gtra2 c.26.1.1 (A:8-338) Glu 99.3 6.8E-12 4.9E-16 122.3 12.1 131 253-397 71-266 (331)
16 d1h3na3 c.26.1.1 (A:1-225,A:41 99.1 1.2E-10 8.8E-15 118.0 13.5 118 126-296 31-153 (494)
17 d1h3fa1 c.26.1.1 (A:5-347) Tyr 97.7 6.6E-06 4.8E-10 79.4 3.7 60 335-404 181-241 (343)
18 d1n3la_ c.26.1.1 (A:) Tyrosyl- 97.3 0.00012 8.4E-09 70.2 5.8 69 335-413 173-242 (339)
19 d1j1ua_ c.26.1.1 (A:) Tyrosyl- 95.9 0.0012 9E-08 61.9 2.0 65 336-414 162-227 (306)
20 d1h3na3 c.26.1.1 (A:1-225,A:41 95.1 0.0019 1.4E-07 63.7 0.4 35 382-416 436-470 (494)
21 d1jila_ c.26.1.1 (A:) Tyrosyl- 78.1 0.68 5E-05 42.8 3.7 57 340-404 186-243 (323)
22 d1r6ta2 c.26.1.1 (A:82-467) Tr 77.5 0.63 4.6E-05 44.1 3.4 64 341-412 224-290 (386)
23 d1jila_ c.26.1.1 (A:) Tyrosyl- 76.8 0.57 4.2E-05 43.4 2.8 43 133-181 34-77 (323)
24 d1iioa_ a.39.4.1 (A:) Hypothet 70.3 1.6 0.00012 31.9 3.3 68 10-79 7-81 (84)
25 d2ts1a_ c.26.1.1 (A:) Tyrosyl- 65.6 2.2 0.00016 39.1 4.0 56 340-403 186-242 (319)
26 d1i6la_ c.26.1.1 (A:) Tryptoph 62.9 1.3 9.4E-05 40.6 1.8 78 335-414 135-218 (326)
27 d1r6ta2 c.26.1.1 (A:82-467) Tr 51.4 4.7 0.00034 37.7 3.7 43 133-180 77-120 (386)
28 d1d4aa_ c.23.5.3 (A:) NAD(P)H: 48.3 10 0.00075 33.4 5.4 39 127-172 2-40 (273)
29 d2ts1a_ c.26.1.1 (A:) Tyrosyl- 47.5 4.2 0.0003 37.2 2.5 43 133-181 33-76 (319)
30 d1i6la_ c.26.1.1 (A:) Tryptoph 44.2 2.2 0.00016 38.9 -0.0 37 134-177 5-42 (326)
31 d2qwxa1 c.23.5.3 (A:1-230) Qui 42.2 16 0.0012 30.5 5.6 39 127-172 2-40 (230)
32 d1kama_ c.26.1.3 (A:) Nicotina 35.0 22 0.0016 27.5 5.1 37 127-172 1-37 (189)
33 d1sw5a_ c.94.1.1 (A:) Osmoprot 33.3 21 0.0016 30.3 5.0 38 148-185 11-48 (270)
34 d1r9la_ c.94.1.1 (A:) Glycine 26.9 20 0.0015 31.1 3.7 32 148-180 18-49 (309)
35 d1lvaa3 a.4.5.35 (A:511-574) C 26.4 83 0.0061 20.7 6.5 51 242-301 6-62 (64)
36 d1lw7a1 c.26.1.3 (A:57-219) Tr 20.6 22 0.0016 27.0 2.3 21 128-151 2-22 (163)
No 1
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=2e-71 Score=556.22 Aligned_cols=286 Identities=33% Similarity=0.505 Sum_probs=250.6
Q ss_pred cCCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccH
Q 014355 124 KLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAI 203 (426)
Q Consensus 124 ~~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i 203 (426)
.+++++|+||||||||||||||||+||+||||+|||||+++||+|+|+|||||||+||++|+.++. +++........++
T Consensus 4 ~~~~kki~vE~~SaNpt~plHvGH~R~aiiGd~larlL~~~G~~V~re~yvnD~G~Qi~~l~~~~~-~~~~~~~~~~~~~ 82 (348)
T d1f7ua2 4 LVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFE-RYGNEEALVKDPI 82 (348)
T ss_dssp CSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHH-HHCCHHHHHHCHH
T ss_pred CCCCCEEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHCCCeEEEEEEECCchHHHHHHHHHHH-Hhccccccccccc
Confidence 468999999999999999999999999999999999999999999999999999999999998764 3333222233455
Q ss_pred HHHHHHHHHhhcccCC-------ChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eeccc-c
Q 014355 204 GELQEFYRRSKNRFDS-------DPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGES-F 274 (426)
Q Consensus 204 ~~l~~~y~~~~~~~~~-------~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~Es-~ 274 (426)
.++.++|...++.++. .+.+.+++++.+.+++++|++++++|+.+++.+++.++++|++|||+|| |++|| +
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~~~l~i~fD~~~~Es~~ 162 (348)
T d1f7ua2 83 HHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQV 162 (348)
T ss_dssp HHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGC
T ss_pred hhHHHHHHHHHhhhcccchhhhhhhhhHhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc
Confidence 6666777666654432 2456778999999999999999999999999999999999999999996 77886 5
Q ss_pred ccCcHHHHHHHHHHCCCEEEeCCeEEEEec--CCCCCe-EEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccc
Q 014355 275 YNPYIPGVIDELSKQGLVEESQGARVIFIE--GVNIPL-IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQL 351 (426)
Q Consensus 275 ~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~--g~~~d~-Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~ 351 (426)
+.+...++++.|+++|++++++||+|++++ |++.|+ ||+||||++||+|+|||||.+|++.++||++|||||++|++
T Consensus 163 ~~~~~~~v~~~L~~~~~~~~~~ga~~~~~~~~g~~~~~~vl~ksDG~~tY~t~DiAy~~~K~~~~~~D~~I~V~g~dq~~ 242 (348)
T d1f7ua2 163 SKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDL 242 (348)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETTEEEEEGGGTCTTTCEEEEECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHH
T ss_pred cccchHHHHHHHHhhccccccCCcccccchhhccccccceeccCCCccceecchHHhhhhhhhccCCCEEEEecccccch
Confidence 555667899999999999999999999987 566555 67899999999999999999999878999999999999999
Q ss_pred cHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHHHHHh
Q 014355 352 HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIER 420 (426)
Q Consensus 352 hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~i~~~ 420 (426)
||+|+++++++||+. ++..+.|+.||+|. |||||+|++|+|+|||+|+.++|++.++++
T Consensus 243 ~~~~l~~~l~~lg~~-----~~~~~~h~~~g~v~-----kMStR~G~~i~l~dll~e~~~~a~~~~~~~ 301 (348)
T d1f7ua2 243 HAAQFFEILKQMGFE-----WAKDLQHVNFGMVQ-----GMSTRKGTVVFLDNILEETKEKMHEVMKKN 301 (348)
T ss_dssp HHHHHHHHHHHTTCG-----GGGGEEEECCCCEE-----SCCGGGTCCCBHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHHHHHHhCCC-----cccceeeecCCccc-----cccccCCCceEHHHHHHHHHHHHHHHHHhc
Confidence 999999999999984 45679999999996 699999999999999999999999998765
No 2
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=1.5e-64 Score=510.06 Aligned_cols=286 Identities=25% Similarity=0.267 Sum_probs=236.2
Q ss_pred CCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHH
Q 014355 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (426)
Q Consensus 125 ~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (426)
.++++|+||||||||||||||||+|||+|||+|||||+++||+|+|+|||||||+||++++.++.....+... ...+..
T Consensus 4 ~~~~~i~vEf~SpN~~kplHvGHlRs~iiGd~laril~~~G~~V~r~nyigD~G~Qi~~l~~~~~~~~~~~~~-~~~~~~ 82 (370)
T d1iq0a2 4 RRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDG-KEKYDH 82 (370)
T ss_dssp CEEEEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCS-SSCHHH
T ss_pred CCCCeEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHcCCEEEEEEeECCchHHHHHHHHHHHHhcccccc-ccchhh
Confidence 3578999999999999999999999999999999999999999999999999999999999877554332211 224444
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eeccc--cccCcHHH
Q 014355 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGES--FYNPYIPG 281 (426)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~Es--~~~~~v~~ 281 (426)
.+.+.|++.+.. ...+.+...+++.+.++++++. ...|+ ..+..++++|.+|||.|| |++|| .+.+.+.+
T Consensus 83 ~~~~~y~~~~~~-~~~~~~~~~~~e~~~~le~~~~--~~~~~----~~l~~~~~~l~~l~v~fD~~~~Es~l~~~~~~~~ 155 (370)
T d1iq0a2 83 FAGRAYVRLHQD-PEYERLQPAIEEVLHALERGEL--REEVN----RILLAQMATMHALNARYDLLVWESDIVRAGLLQK 155 (370)
T ss_dssp HHHHHHHHHHHC-TTTGGGHHHHHHHHHHHHTTTT--HHHHH----HHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHH
T ss_pred hhhhhhhhhhhh-HHHHHHHHHHHHHHHHHHhhhH--HHHHH----HHHHHHHhhhhccceeeceeeeecccccccchhh
Confidence 556778876654 3345677788888999998863 23333 334566778999999996 77775 45778999
Q ss_pred HHHHHHHCCCEEEeC-----CeEEEEec-----CCCCCeEEEecCCccccccccHHHHHHHHhh----------------
Q 014355 282 VIDELSKQGLVEESQ-----GARVIFIE-----GVNIPLIIVKSDGGFNYASTDLAALWYRLNE---------------- 335 (426)
Q Consensus 282 vi~~L~~~g~~~~~d-----Ga~~~~~~-----g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~---------------- 335 (426)
+++.|.++|.+++.+ ||+|++.+ ++++|+||+||||++||+|+|||||++|++.
T Consensus 156 ~i~~l~~~~~~~~~~~~~~~ga~~~d~~~~~~~~~~~~~vl~ksDG~~tY~t~DiAy~~~K~~~~~~~~~~~~~~~~~~~ 235 (370)
T d1iq0a2 156 ALALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPG 235 (370)
T ss_dssp HHHHHTTSTTEECCSSSTTTTCEEEECTTTSCSCSCCEEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTT
T ss_pred hHhhhhhccceeeccccccceEEEecCccccccccCcceeeEeccCCceEeccHHHHHhhhcccccccceeccccCccce
Confidence 999999999999765 89999875 3567899999999999999999999999742
Q ss_pred ------------cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHH
Q 014355 336 ------------EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 403 (426)
Q Consensus 336 ------------~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~ 403 (426)
.++|++|||+|.+|..||++++++++++|+. +.+..+.|++||+|.+ +|+|||||+|++|+|+
T Consensus 236 i~i~~~d~~~~~~~~d~~iyVvd~~Q~~h~~~v~~~~~~~g~~----~~~~~~~hv~~g~v~~-~g~kMStR~G~~v~l~ 310 (370)
T d1iq0a2 236 LRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYP----ALAEKAHHLAYETVLL-EGRQMSGRKGLAVSVD 310 (370)
T ss_dssp CEEEEEEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCH----HHHTTEEEEEECCEEE-TTBCSCC----CCBHH
T ss_pred eEeeccccccchhhhhHHHHHHhccchHHHHHHHHHHHHhCCC----chhhceeeEEEEEEec-CCccccccCCCeeEHH
Confidence 3799999999999999999999999999994 2456899999999996 5789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 014355 404 DLLDEAKNRSKAVLIERGIY 423 (426)
Q Consensus 404 dLlde~~~~a~~~i~~~~~~ 423 (426)
|||+|+.++|++.+++|+..
T Consensus 311 dll~ea~~~a~~~~~~r~~~ 330 (370)
T d1iq0a2 311 EVLEEATRRARAIVEEKNPD 330 (370)
T ss_dssp HHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999998753
No 3
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}
Probab=99.95 E-value=1.7e-27 Score=232.76 Aligned_cols=229 Identities=13% Similarity=0.118 Sum_probs=154.4
Q ss_pred CCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHH
Q 014355 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (426)
Q Consensus 125 ~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~ 204 (426)
.++.+|.|+.|+|.|+|++||||+|++|+||+|||+|++.||+|.+++|+||+|+||...++.. +...
T Consensus 18 ~~~~~~~~yv~Gptv~g~~HIGH~R~av~gD~laR~lr~~G~~V~~~~~~dd~G~~i~~~a~~~-----------~~~~- 85 (315)
T d1li5a2 18 IHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANEN-----------GESF- 85 (315)
T ss_dssp SSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHT-----------TCCH-
T ss_pred CCCCeEEEEecCCcCCCCcccchhHHHHHHHHHHHHHHHcCCcEEEEecccchhHHHHHHHhhh-----------hhcc-
Confidence 3566888888899999999999999999999999999999999999999999999998766432 0000
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCce-eeecc-ccccCcHHHH
Q 014355 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIPGV 282 (426)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~f-d~~~E-s~~~~~v~~v 282 (426)
+++++.....+.+++++++|.. ++... +.+...+.+.
T Consensus 86 -----------------------------------------~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~ 124 (315)
T d1li5a2 86 -----------------------------------------VAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIEL 124 (315)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHH
T ss_pred -----------------------------------------ccccccchhhhhhhHHhcCCCCCcEEEecchhhhhhhhH
Confidence 1123334456777888888876 33322 2233455666
Q ss_pred HHHHHHCCCEEEe-CCeEEEEec----------------------------CCCCCeEEEecC-------------Cccc
Q 014355 283 IDELSKQGLVEES-QGARVIFIE----------------------------GVNIPLIIVKSD-------------GGFN 320 (426)
Q Consensus 283 i~~L~~~g~~~~~-dGa~~~~~~----------------------------g~~~d~Vl~ksD-------------G~~t 320 (426)
+++|..+|.++.. ++.+++... .+..+.++.|.. +.|+
T Consensus 125 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~g~~~~~ 204 (315)
T d1li5a2 125 TEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPG 204 (315)
T ss_dssp HHHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC----------------CCSTTCEEEEEECCTTSCCBCCTTCSEEEC
T ss_pred HHHhhccCceeccccceEEeecccccccCccccccccccccCCcccccccccChhhhhccccCccCCceeccCCceeccc
Confidence 7788888888753 556665532 012346666622 2345
Q ss_pred cccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHH--HHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCC
Q 014355 321 YASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSA--AKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE 398 (426)
Q Consensus 321 Y~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~--~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~ 398 (426)
|...+++++.+.+ +..+++++.+++.|+++.... ...++... .....+.|. ++|.. +|+|||||+||
T Consensus 205 ~~~~~~~~w~~~l-----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~l~~-~G~KMSKs~Gn 273 (315)
T d1li5a2 205 WHIECSAMNCKQL-----GNHFDIHGGGSDLMFPHHENEIAQSTCAHDG---QYVNYWMHS--GMVMV-DREKMSKSLGN 273 (315)
T ss_dssp SSHHHHHHHHHHH-----CSSEEEEECBGGGTTTHHHHHHHHHHHHSSS---CCEEEECCB--CCEEE-TTBCCCGGGTC
T ss_pred ccchhhhHHHHHc-----CCcccccccccccccccccccchhhhccccc---ccccEEEEE--EEEec-CCcEecCcCCC
Confidence 5555555555544 244667777777766654322 22223221 233445555 66775 67899999999
Q ss_pred ceeHHHHHHHHHHHHHHHH
Q 014355 399 VVRLVDLLDEAKNRSKAVL 417 (426)
Q Consensus 399 ~v~L~dLlde~~~~a~~~i 417 (426)
+|+++||++++...|.+-.
T Consensus 274 ~V~~~dlle~~g~D~lRy~ 292 (315)
T d1li5a2 274 FFTVRDVLKYYDAETVRYF 292 (315)
T ss_dssp CCBHHHHHTTSCHHHHHHH
T ss_pred cccHHHHHHhCCHHHHHHH
Confidence 9999999999988887654
No 4
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=99.92 E-value=1.1e-26 Score=221.76 Aligned_cols=58 Identities=21% Similarity=0.170 Sum_probs=53.7
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGML 184 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l 184 (426)
..++|+|+ |||||||||||||+|++++||+|||+||+.||+|.+++|+||+|.|+...
T Consensus 16 ~k~~~v~~-~~~~PnG~lHIGHlr~~i~gD~laR~lr~~G~~V~~~~~~dd~g~~~~~~ 73 (317)
T d1irxa2 16 EKEKYVVE-SGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVP 73 (317)
T ss_dssp CCSEEEEE-EEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCC
T ss_pred CCCeEEEE-CCCCCCCCccccccHHHHHHHHHHHHHHHcCCCEEEEEEeccCcchhhhH
Confidence 45677777 89999999999999999999999999999999999999999999998754
No 5
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.87 E-value=4.1e-22 Score=194.93 Aligned_cols=229 Identities=14% Similarity=0.128 Sum_probs=147.6
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHH
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (426)
.+++.|...-|.|+|||||||+|++++||+|+|+|+++||+|..+..++|.|.++...+...
T Consensus 2 ~~~~~~~~~~PypnG~lHiGH~r~~v~~D~l~R~lr~~G~~V~~v~g~D~~g~~i~~~a~~~------------------ 63 (348)
T d2d5ba2 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA------------------ 63 (348)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHH------------------
T ss_pred CCCEEEecCCCCCCCCcccccCHHHHHHHHHHHHHHhcCCCeEecCcCCCCCHHHHHHHHHc------------------
Confidence 46899999999999999999999999999999999999999999999999998876443210
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceee-ec-c-ccccCcHHHHH
Q 014355 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KG-E-SFYNPYIPGVI 283 (426)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~-~~-E-s~~~~~v~~vi 283 (426)
+ .+ +++++......|++.++.+||.++. .. . ..+...+.+++
T Consensus 64 -------g----~~------------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 108 (348)
T d2d5ba2 64 -------G----ED------------------------PKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVL 108 (348)
T ss_dssp -------T----SC------------------------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHH
T ss_pred -------C----CC------------------------HHHhhhhHHHHHHHHHHhcCccccceeecccchhhHHHHHHH
Confidence 0 00 1234455566788899999999853 22 2 33456788899
Q ss_pred HHHHHCCCEEEeCCeEEEEec------------------CC---------------------------------------
Q 014355 284 DELSKQGLVEESQGARVIFIE------------------GV--------------------------------------- 306 (426)
Q Consensus 284 ~~L~~~g~~~~~dGa~~~~~~------------------g~--------------------------------------- 306 (426)
..+.++|++|+.....++... |.
T Consensus 109 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (348)
T d2d5ba2 109 KKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRN 188 (348)
T ss_dssp HHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHH
T ss_pred HHHHhhCccccccccccccccccceeccccccccccccCCCceEEecccccccchHhhhhhHHHhhhccccccccccccc
Confidence 999999998864332221100 00
Q ss_pred ---------CCCeEEEecCC---------------ccccccccHHHHHH-------HHhhcCCCeEEEEeeCCccccHHH
Q 014355 307 ---------NIPLIIVKSDG---------------GFNYASTDLAALWY-------RLNEEKAEWIIYVTDVGQQLHFDM 355 (426)
Q Consensus 307 ---------~~d~Vl~ksDG---------------~~tY~t~DiA~~~~-------r~~~~~~d~~i~V~g~~q~~hf~~ 355 (426)
-.|..+..... ..+|+...+++... .+ ....+..+.+.|.++..+...
T Consensus 189 ~~~~~~~~~l~d~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~d~~~~~~~ 267 (348)
T d2d5ba2 189 EVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAY-RTFWPHAWHLIGKDILKPHAV 267 (348)
T ss_dssp HHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTTCHHH-HHHGGGEEEEEEGGGHHHHHT
T ss_pred cccccccccccccccccccccCCCCcccccCCcccccchhccchhhhhhhcCCchhhh-ccccchheeeehhhccchhhh
Confidence 00111211111 11222222222210 11 112345677888887654444
Q ss_pred HHHHHH-HcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHH
Q 014355 356 VFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 356 ~~~~~~-~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~ 416 (426)
...+.. +.+.. ++...+.| |++.+.+|+|||||+||+|+++||++++...+.+.
T Consensus 268 ~~~~~~~~~~~~----~~~~v~~~---~~~l~~~G~KMSKS~Gn~i~~~ell~~~g~D~lR~ 322 (348)
T d2d5ba2 268 FWPTMLKAAGIP----MYRHLNVG---GFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRY 322 (348)
T ss_dssp HHHHHHHHHTCC----CCSEEEEE---CCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHH
T ss_pred hhhhhccccccC----CCCEEEeC---ceEEcccCCCCcCCCCcccCHHHHHHHCCcHHHHH
Confidence 433332 23332 33333334 66888999999999999999999999988887763
No 6
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.87 E-value=1.4e-20 Score=189.64 Aligned_cols=138 Identities=20% Similarity=0.191 Sum_probs=103.8
Q ss_pred cCCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccH
Q 014355 124 KLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAI 203 (426)
Q Consensus 124 ~~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i 203 (426)
..++++.+|..+.|||||||||||+|+++++|+++|.+|.+||+|....+.++.|+.+...++..... +. ...
T Consensus 30 ~~~~~~f~i~~~pPy~NG~lHlGH~~~yv~~Dv~~Ry~r~~G~~V~~v~g~D~hG~~i~~~aek~~~~-~~------~~~ 102 (425)
T d1ivsa4 30 KSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLK-EG------KTR 102 (425)
T ss_dssp TCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHHHHHT-TT------CCG
T ss_pred CCCCCcEEEEcCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCceeecCcccCCcchHHHHHHHhhcc-cC------CCh
Confidence 35678899999999999999999999999999999999999999999999999999998765422110 00 000
Q ss_pred HHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec-----cccccCc
Q 014355 204 GELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPY 278 (426)
Q Consensus 204 ~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~-----Es~~~~~ 278 (426)
. .+ +.......+..++....+.+.+.+++||+.+|+.. +..|...
T Consensus 103 ~-----------~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~d~~~~~~t~~~~~~~~ 152 (425)
T d1ivsa4 103 H-----------DL-------------------GREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRA 152 (425)
T ss_dssp G-----------GS-------------------TTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHH
T ss_pred H-----------Hh-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcchhhcccchhhhhh
Confidence 0 00 11122334455566667788889999999987532 2345567
Q ss_pred HHHHHHHHHHCCCEEEeCCe
Q 014355 279 IPGVIDELSKQGLVEESQGA 298 (426)
Q Consensus 279 v~~vi~~L~~~g~~~~~dGa 298 (426)
+.+++..|.++|++|+.+.-
T Consensus 153 ~~~~~~~l~~~G~iy~~~~~ 172 (425)
T d1ivsa4 153 VRYAFSRYYHEGLAYRAPRL 172 (425)
T ss_dssp HHHHHHHHHTTSSEEEECCE
T ss_pred hHHHHhhhhccCccccccee
Confidence 89999999999999986643
No 7
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}
Probab=99.85 E-value=4.3e-21 Score=188.61 Aligned_cols=121 Identities=15% Similarity=0.156 Sum_probs=94.9
Q ss_pred ceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHH
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (426)
|+++|--.-|+|+||+||||+|+++++|+|+|+|++.||+|..+.+++|.|..+..-+.-
T Consensus 2 ~~~~i~~~~P~~nG~lHiGHar~~v~~D~l~R~lr~~G~~V~~v~~~dd~g~ki~~~a~~-------------------- 61 (350)
T d1pfva2 2 KKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ-------------------- 61 (350)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH--------------------
T ss_pred CeEEEeCCCCCCCCCccccccHHHHHHHHHHHHHHhcCCceEecCccCCccHHHHHHHHH--------------------
Confidence 689999999999999999999999999999999999999999999999998766533210
Q ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec---cccccCcHHHHHH
Q 014355 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVID 284 (426)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~---Es~~~~~v~~vi~ 284 (426)
.+ . + ++++++.+...|.++++.|||.++... ...+...++++++
T Consensus 62 -----~g----~------------------~------~~~~~~~~~~~~~~~~~~l~i~~~~~~~t~~~~~~~~~~~~~~ 108 (350)
T d1pfva2 62 -----LG----I------------------T------PEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYS 108 (350)
T ss_dssp -----HT----S------------------C------HHHHHHHHHHHHHHHHHHTTCCCSEEEESSSHHHHHHHHHHHH
T ss_pred -----cC----C------------------C------HHHHHHhHHHHHHHHHHHcCCCcccCCCcCCcccchHHHHHHH
Confidence 00 0 1 133555666788889999999874322 2345667889999
Q ss_pred HHHHCCCEEEeCCeEEE
Q 014355 285 ELSKQGLVEESQGARVI 301 (426)
Q Consensus 285 ~L~~~g~~~~~dGa~~~ 301 (426)
+|.++|++|+.+..+++
T Consensus 109 ~l~~~g~~~~~~~~~~~ 125 (350)
T d1pfva2 109 RLKENGFIKNRTISQLY 125 (350)
T ss_dssp HHHHTTCEEEEEEEEEE
T ss_pred HHhhccceeeccceEEE
Confidence 99999999987655444
No 8
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=99.79 E-value=6.4e-19 Score=179.80 Aligned_cols=133 Identities=13% Similarity=0.154 Sum_probs=101.2
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
..++.+|....|||+|+|||||+++.++.|+++|.+|..||+|....+.++.|.++...+... ..... +
T Consensus 46 ~~~~f~~~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~rm~G~~V~~~~G~D~~G~pie~~~~~~---~~~~~----~---- 114 (450)
T d1ffya3 46 GNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKK---GVDRK----K---- 114 (450)
T ss_dssp TSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHH---TCCST----T----
T ss_pred CCCcEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCccccccccccCCcHHHHHHHhh---CCccc----c----
Confidence 345678888999999999999999999999999999999999999999999999988654321 00000 0
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-----s~~~~~v~ 280 (426)
+ +..+..+..+.++....+.+++.+++||+.+||..+ ..|...+.
T Consensus 115 -----------~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~v~ 164 (450)
T d1ffya3 115 -----------M-------------------STAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQI 164 (450)
T ss_dssp -----------T-------------------CHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHH
T ss_pred -----------c-------------------cHHHHhhhcchhhhhhhhhHHHHHHHHhhhcccccccccccHHHHHHHH
Confidence 0 011122344556677788889999999999987543 23456789
Q ss_pred HHHHHHHHCCCEEEeCCeE
Q 014355 281 GVIDELSKQGLVEESQGAR 299 (426)
Q Consensus 281 ~vi~~L~~~g~~~~~dGa~ 299 (426)
+++.+|.++|++|+...-+
T Consensus 165 ~~f~~l~~~G~iy~~~~~v 183 (450)
T d1ffya3 165 RIFGEMADKGLIYKGKKPV 183 (450)
T ss_dssp HHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHcCCeecccccc
Confidence 9999999999999855433
No 9
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.78 E-value=9.2e-19 Score=177.44 Aligned_cols=137 Identities=17% Similarity=0.152 Sum_probs=101.2
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHH
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (426)
+++.+|--..|+|+|++||||+|+.+++|+++|.+|.+||+|..+.+.++.|+.+..-+... ... ....++
T Consensus 37 ~~~f~i~~~pPy~nG~lHiGH~~~~v~~Dv~~Ry~r~~G~~V~~v~G~D~hG~~i~~~a~~~---~~~------~~~~~~ 107 (452)
T d1ilea3 37 GPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKK---LGL------KSKREI 107 (452)
T ss_dssp SCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHH---TTC------CSHHHH
T ss_pred CCCEEEecCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCCceeccCCcCCCCHHHHHHHHHh---hcc------ccccch
Confidence 46788888999999999999999999999999999999999999999999999998765321 000 000110
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec-----cccccCcHHH
Q 014355 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPG 281 (426)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~-----Es~~~~~v~~ 281 (426)
.. ...+ +..+.|++++..+...+.+.+.+||+..++.. +..|...+.+
T Consensus 108 ---~~--------------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~T~~~~~~~~~~~ 160 (452)
T d1ilea3 108 ---EA--------------YGIE----------RFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWW 160 (452)
T ss_dssp ---HH--------------HCHH----------HHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHH
T ss_pred ---hH--------------HHHH----------HHHHHHhhHHhhhhhhHHHHHhhhccccccchhhhcCChHHHHHHHH
Confidence 00 0001 11234566666777888889999999986532 2345667899
Q ss_pred HHHHHHHCCCEEEeCCeE
Q 014355 282 VIDELSKQGLVEESQGAR 299 (426)
Q Consensus 282 vi~~L~~~g~~~~~dGa~ 299 (426)
++.+|.++|++|......
T Consensus 161 ~f~~l~~~G~iy~~~~~~ 178 (452)
T d1ilea3 161 SLKNLFDRGLLYRDHKVV 178 (452)
T ss_dssp HHHHHHHTTCEEEECCEE
T ss_pred HHHHHHhcCCcccccccc
Confidence 999999999999875433
No 10
>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Thermus thermophilus [TaxId: 274]}
Probab=99.75 E-value=2.1e-18 Score=139.42 Aligned_cols=90 Identities=28% Similarity=0.410 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcccccc-cCCCCccccchhhHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCceeee
Q 014355 11 VKRELEKVFDLALKATVPNETDVRPLIAA-CTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESC 89 (426)
Q Consensus 11 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~~GD~~t~~a~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~i~~v 89 (426)
+++.|+++|.+++.... .+....++. |+++||||||| ||.|||.++ +||++||++|++.|..++.|+++
T Consensus 2 i~~~i~~~i~~~l~~~~---~~~~~~i~~~~~~~~GD~a~n-a~~laK~~~------k~P~~iA~~I~~~l~~~~~i~~v 71 (96)
T d1iq0a3 2 LRRALEEAIAQALKEMG---VPVRLKVARAPKDKPGDYGVP-LFALAKELR------KPPQAIAQELKDRLPLPEFVEEA 71 (96)
T ss_dssp CHHHHHHHHHHHHHTTS---CCCCCCCEECSTTSSCSEEEE-CSHHHHHTT------SCHHHHHHHHHHTCCCCTTEEEE
T ss_pred hHHHHHHHHHHHHHhcC---CCCceeeecCCCCCCcchHHH-HHHHHHHHC------CCHHHHHHHHHHHhccCccccee
Confidence 46778888888877541 233345554 47899999999 899999999 99999999999999888899999
Q ss_pred EEecCcEEEEeeCHHHHHHHHH
Q 014355 90 SVAGPGFVNVVLSKNWMAKNIQ 111 (426)
Q Consensus 90 ~vagpGfiNf~l~~~~~~~~l~ 111 (426)
+++|| ||||+|+++++++.+.
T Consensus 72 ~~~gp-FiNf~l~~~~l~~~il 92 (96)
T d1iq0a3 72 VPVGG-YLNFRLRTEALLREAL 92 (96)
T ss_dssp EEETT-EEEEEECHHHHHHHHH
T ss_pred EeeCC-eEEEEECHHHHHHHHh
Confidence 99996 9999999999877653
No 11
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.70 E-value=5.2e-17 Score=157.53 Aligned_cols=188 Identities=21% Similarity=0.197 Sum_probs=136.1
Q ss_pred cCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHhh
Q 014355 135 SSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSK 214 (426)
Q Consensus 135 ~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~ 214 (426)
-.|+|||+|||||+|++++...+|| .+-|.=+.| ++|.-.+
T Consensus 6 faPsPtG~lHiG~~rtal~n~~~Ak--~~~G~~iLR---idDtD~~---------------------------------- 46 (305)
T d1j09a2 6 IAPSPTGDPHVGTAYIALFNYAWAR--RNGGRFIVR---IEDTDRA---------------------------------- 46 (305)
T ss_dssp ECCCCSSSCBHHHHHHHHHHHHHHH--HTTCEEEEC---BCCCCTT----------------------------------
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEE---eCcCCCc----------------------------------
Confidence 3699999999999999999999998 345543334 4553100
Q ss_pred cccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeee----------ccccccCcHHHHHH
Q 014355 215 NRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK----------GESFYNPYIPGVID 284 (426)
Q Consensus 215 ~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~----------~Es~~~~~v~~vi~ 284 (426)
+ ..++ +.+.+.++++.||+..|.. ..|.+.+...++++
T Consensus 47 -R--~~~~-----------------------------~~~~I~~dL~wLgi~wD~~p~~~~~~~~~~qS~r~~~y~~~~~ 94 (305)
T d1j09a2 47 -R--YVPG-----------------------------AEERILAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAE 94 (305)
T ss_dssp -S--CCTT-----------------------------HHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHH
T ss_pred -c--CchH-----------------------------HHHHHHHHHHHHhcCcccCCcCCCCCcceeeecchhHHHHHHH
Confidence 0 0011 1245566899999988632 12333445788899
Q ss_pred HHHHCCCEEEeC-----------------------------------CeEEEEec---------------------CCCC
Q 014355 285 ELSKQGLVEESQ-----------------------------------GARVIFIE---------------------GVNI 308 (426)
Q Consensus 285 ~L~~~g~~~~~d-----------------------------------Ga~~~~~~---------------------g~~~ 308 (426)
+|+++|.+|... ...++++. ..-.
T Consensus 95 ~Li~~g~aY~C~cs~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~k~~~~~~~~~~d~i~~~~~~~~~~~~ 174 (305)
T d1j09a2 95 ELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIP 174 (305)
T ss_dssp HHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETTTEEEEEEGGGSC
T ss_pred HHHHcCCeeeccccchhhhhhhhhccCCCCccccchhhhHHHHhhcCCcceEEEeccccCCccccchhhceeeeccccCC
Confidence 999999999521 01112221 0124
Q ss_pred CeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCC
Q 014355 309 PLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED 388 (426)
Q Consensus 309 d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~ 388 (426)
|+||+|+||.|+|. +|..++.. ..|.+++| .|.|+...-++...+.++||+. .+.+.|+ .++.+.+
T Consensus 175 D~vi~r~dg~p~Y~---~A~vvDD~-~~githvi--RG~Dl~~~t~~q~~l~~~Lg~~------~p~~~h~--~l~~~~~ 240 (305)
T d1j09a2 175 DVVLLKSDGYPTYH---LANVVDDH-LMGVTDVI--RAEEWLVSTPIHVLLYRAFGWE------APRFYHM--PLLRNPD 240 (305)
T ss_dssp CCEEECTTSCBCHH---HHHHHHHH-HTTCCEEE--EEGGGGGGHHHHHHHHHHHTCC------CCEEEEE--CCCBCTT
T ss_pred CeEEECCCCCeehH---HHHHHHHH-HccCcccc--ccccceeccHHHHHHHHhhcCC------CCceeee--cccccCc
Confidence 78999999999995 89999887 57999996 8999988888777899999994 4678888 4488899
Q ss_pred CccccccCCCceeHHHHHHH
Q 014355 389 GKRLRTRFSEVVRLVDLLDE 408 (426)
Q Consensus 389 g~kmSkR~G~~v~L~dLlde 408 (426)
|+|||||+| ..||++|.++
T Consensus 241 g~KLSKr~~-~~tl~~lr~~ 259 (305)
T d1j09a2 241 KTKISKRKS-HTSLDWYKAE 259 (305)
T ss_dssp SCBCCTTTS-CCBHHHHHHT
T ss_pred cccccccCC-ccCHHHHHHc
Confidence 999999999 6799998875
No 12
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Probab=99.63 E-value=1.3e-15 Score=148.81 Aligned_cols=116 Identities=14% Similarity=0.178 Sum_probs=85.6
Q ss_pred ceEEEEecCCCcCCCccchhHHHH-HHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHH
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRST-IIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsa-iiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l 206 (426)
.|.+|--+-|||+|+|||||+|++ +.+|+|+|+|+..||+|......+|.|+.+..-+.-
T Consensus 2 ~~~~v~~~~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~A~~------------------- 62 (361)
T d1rqga2 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK------------------- 62 (361)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH-------------------
T ss_pred ceEEEecCCCCCCCCcccccccccHHHHHHHHHHHHhcCCceEecCccCcccHHHHHHHHH-------------------
Confidence 367888899999999999998875 669999999999999999999999998776543210
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeee--cc-ccccCcHHHHH
Q 014355 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK--GE-SFYNPYIPGVI 283 (426)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~--~E-s~~~~~v~~vi 283 (426)
.+ .+ .+++++.....+.+++..+++.++.. .. ..+...++.++
T Consensus 63 ------~g----~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 108 (361)
T d1rqga2 63 ------EG----RS------------------------PREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFF 108 (361)
T ss_dssp ------HT----CC------------------------HHHHHHHHHHHHHHHHHHHTCCCSEEEETTSHHHHHHHHHHH
T ss_pred ------cC----CC------------------------HHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhh
Confidence 00 01 12345555667777888888887422 12 23345677888
Q ss_pred HHHHHCCCEEEeC
Q 014355 284 DELSKQGLVEESQ 296 (426)
Q Consensus 284 ~~L~~~g~~~~~d 296 (426)
..+.++|.+++.+
T Consensus 109 ~~~~~~~~~~~~~ 121 (361)
T d1rqga2 109 LKAYENGHLVKKV 121 (361)
T ss_dssp HHHHHTTCEEEEE
T ss_pred hhccccCceeeee
Confidence 8899999887654
No 13
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]}
Probab=99.61 E-value=4.9e-16 Score=149.23 Aligned_cols=130 Identities=21% Similarity=0.191 Sum_probs=86.8
Q ss_pred HHHHHHHHHcCCceee--eccccccCcHHHHHHHHHHCCCEEEeC-------------------------CeEE-EEec-
Q 014355 254 KEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLVEESQ-------------------------GARV-IFIE- 304 (426)
Q Consensus 254 ~~~~~~~~~Lgi~fd~--~~Es~~~~~v~~vi~~L~~~g~~~~~d-------------------------Ga~~-~~~~- 304 (426)
+.+.++|+.||+..|. ...|.+.+.-.+++++|.++|.+|... ...+ +...
T Consensus 55 ~~I~~dL~wlgl~~d~~~~~QS~r~~~Y~~~~~~L~~~g~aY~C~ct~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 134 (286)
T d1nzja_ 55 ETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQH 134 (286)
T ss_dssp HHHHHHHHHTTCCCSSCCEEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSS
T ss_pred HHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHHcCCcccccccHHHHHhhccccccccccccchhhhhhhhhcccc
Confidence 5667789999998753 223555556788999999999999621 0011 1110
Q ss_pred ----------C--------CCCCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCC
Q 014355 305 ----------G--------VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL 366 (426)
Q Consensus 305 ----------g--------~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~ 366 (426)
+ ...|+||.|+||.|||. +|..++.. ..|.+++| .|.||-..-++...+.++|||.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~D~vi~R~dg~ptY~---lA~vVDD~-~~gIThVi--RG~D~l~st~~Q~~L~~~lg~~ 208 (286)
T d1nzja_ 135 PVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYN---LAVVVDDH-FQGVTEIV--RGADLIEPTVRQISLYQLFGWK 208 (286)
T ss_dssp CCCEEEETTTEEEECCHHHHHSCCEEECTTSCBCHH---HHHHHHHH-HTTCCEEE--EEGGGHHHHHHHHHHHHHHTCC
T ss_pred cccceeeeeeeeeeeccccccccccccCCCCCeeee---ehhhhccc-ccccceec--ccccccchHHHHHHHHHhhCCC
Confidence 0 01489999999999998 78888887 57999996 8999876655666888999994
Q ss_pred CCCCCCCCcEEEEEeEEEEcCCCccccccCC
Q 014355 367 SADDSTYPKASHVGFGLVLGEDGKRLRTRFS 397 (426)
Q Consensus 367 ~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G 397 (426)
.+.+.|+ ++|.+++|+|||||.|
T Consensus 209 ------~P~y~H~--pli~~~~g~KLSKr~~ 231 (286)
T d1nzja_ 209 ------VPDYIHL--PLALNPQGAKLSKQNH 231 (286)
T ss_dssp ------CCEEEEE--CBCCC-----------
T ss_pred ------ccceeec--ceEEccCCcccccccC
Confidence 4689999 5598899999999988
No 14
>d1f7ua3 d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.49 E-value=4e-14 Score=120.41 Aligned_cols=103 Identities=15% Similarity=0.227 Sum_probs=75.7
Q ss_pred cchHhHHHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCccccchhhHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCC
Q 014355 6 ENTGNVKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSE 84 (426)
Q Consensus 6 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~~GD~~t~~a~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~ 84 (426)
|.|+.++..|.+.+.++.. +. ...+...+++| +.++|||++|+++ +|..| +||++||++|+++++..+
T Consensus 29 n~~D~~R~~Ia~~L~~i~g--vd-~~~i~~~le~p~~~d~GDla~~~p~--lk~kg------knP~eiA~ela~~l~~~~ 97 (134)
T d1f7ua3 29 NIVDLMRNYISQELSKISG--VD-SSLIFPALEWTNTMERGDLLIPIPR--LRIKG------ANPKDLAVQWAEKFPCGD 97 (134)
T ss_dssp CHHHHHHHHHHHHHHHHHC--CC-HHHHGGGCEECSSGGGCSEEEEGGG--GCCTT------CCHHHHHHHHHHTCCCTT
T ss_pred ChHHHHHHHHHHHHHHHhC--CC-HHHHHHHhhCCCCCcccchHHHHHH--HHHcC------CCHHHHHHHHHHHcCCCC
Confidence 4555556666665554331 11 01123456666 5689999999876 34445 899999999999999888
Q ss_pred ceeeeEEecCcEEEEeeCHHHHHHH-HHHHHHcCCCC
Q 014355 85 MIESCSVAGPGFVNVVLSKNWMAKN-IQKMLVDGIET 120 (426)
Q Consensus 85 ~i~~v~vagpGfiNf~l~~~~~~~~-l~~~l~~~~~~ 120 (426)
+|++++++|| ||||+|+++++.+. +..+++.++.|
T Consensus 98 ~i~~v~~~Gp-FINf~l~~~~l~~~vl~~Il~~~~~Y 133 (134)
T d1f7ua3 98 FLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDY 133 (134)
T ss_dssp TEEEEEEETT-EEEEEECHHHHHHHHHHHHHHHGGGT
T ss_pred ceeeEEeeCC-eEEEEECHHHHHHHHHHHHHHhhhcc
Confidence 9999999998 99999999998876 57888776654
No 15
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}
Probab=99.28 E-value=6.8e-12 Score=122.31 Aligned_cols=131 Identities=11% Similarity=-0.112 Sum_probs=91.4
Q ss_pred HHHHHHHHHHcCCceee--eccccccCcHHHHHHHHHHCCCEEEeC----------------------------------
Q 014355 253 RKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLVEESQ---------------------------------- 296 (426)
Q Consensus 253 ~~~~~~~~~~Lgi~fd~--~~Es~~~~~v~~vi~~L~~~g~~~~~d---------------------------------- 296 (426)
.+.+.++|+.||+..|. ..-|.+.+.-.+++++|.++|.+|...
T Consensus 71 ~~~I~~dL~WLGl~wD~~~~~QS~r~~~Y~~~~~~L~~~G~aY~C~cs~eel~~~r~~~~~~g~~~~~~~~~~~~~~~~~ 150 (331)
T d1gtra2 71 VESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALF 150 (331)
T ss_dssp HHHHHHHHHHTTCCCSSSCEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHTCCSSSCCCCCTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccceecchHHHHHHHHHHhhhhcCCcccccccHHHHHHHHhhhhccCCCCCCCCccccccHHHh
Confidence 35666789999998752 112333345578888999999888521
Q ss_pred ----------CeEEEEec----C---------------CCCCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeC
Q 014355 297 ----------GARVIFIE----G---------------VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDV 347 (426)
Q Consensus 297 ----------Ga~~~~~~----g---------------~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~ 347 (426)
+..+++.. . ...|+|+.|+||.|||. +|..++.. ..|.++|| .|.
T Consensus 151 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~d~~~~~~~~~~~d~v~~r~dg~ptY~---lA~vVDD~-~~gIThVi--RG~ 224 (331)
T d1gtra2 151 EKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYD---FTHCISDA-LEGITHSL--CTL 224 (331)
T ss_dssp HHHHHTCSCTTSCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHH---HHHHHHHH-HHTCSEEE--EEG
T ss_pred hHHhhccccCCceEEEEecccCCCceeEEccceeeeccCCCcccccccccccHHh---hhHHHhhh-hhccccee--ccc
Confidence 11122221 0 11367889999999998 78888887 57999996 899
Q ss_pred CccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCC
Q 014355 348 GQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFS 397 (426)
Q Consensus 348 ~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G 397 (426)
||-.--+....+.++||+. .+.+.|++. +.+.+|.|||||++
T Consensus 225 D~l~~T~~q~~l~~~Lg~~------~p~~~h~~~--~l~~~g~~lskr~l 266 (331)
T d1gtra2 225 EFQDNRRLYDWVLDNITIP------VHPRQYEFS--RLNLEYTVMSKRKL 266 (331)
T ss_dssp GGTTTHHHHHHHHHHSCCS------CCCEEEEEC--CCCBTTSCCCHHHH
T ss_pred ccccccHHHHHHHHhccCC------CCcceeecc--ccccccchhhhccc
Confidence 9877666666888999994 245778754 56778999999964
No 16
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.14 E-value=1.2e-10 Score=118.02 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=94.9
Q ss_pred CCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHH
Q 014355 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (426)
Q Consensus 126 ~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~ 205 (426)
..++..|.-..||+||.|||||+.+.++-|+++|..|..|++|......++.|..+...++ ++.
T Consensus 31 ~~~~~~i~~~pP~~nG~lHiGH~~~~~~~D~~~R~~rm~G~~v~~~~G~D~~G~~~e~~~~----k~~------------ 94 (494)
T d1h3na3 31 GRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAAL----KFG------------ 94 (494)
T ss_dssp TTCEEEEEECCCCSSSCCBHHHHHHHHHHHHHHHHHHHTTCEEECCCCBCCSSHHHHHHHH----HTT------------
T ss_pred CCCCeEEEeCCCCCCCchhhhHHHHHHHHHHHHHHHHccCCcccCcCCcCcchHHHHHHHH----HhC------------
Confidence 4556788899999999999999999999999999999999999999999999988765432 110
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc-----ccccCcHH
Q 014355 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (426)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E-----s~~~~~v~ 280 (426)
.. .+++++.+...+++.+++||+.+||..+ ..|...+.
T Consensus 95 -------------~~------------------------~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~d~~~~~~~~ 137 (494)
T d1h3na3 95 -------------VH------------------------PKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQ 137 (494)
T ss_dssp -------------CC------------------------HHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHH
T ss_pred -------------CC------------------------hHHHHHHHHHHhHHHHHhcCcccCCCCceecCCccccchHH
Confidence 00 1234555667788899999999987543 23456799
Q ss_pred HHHHHHHHCCCEEEeC
Q 014355 281 GVIDELSKQGLVEESQ 296 (426)
Q Consensus 281 ~vi~~L~~~g~~~~~d 296 (426)
+++.+|.++|++|+..
T Consensus 138 ~~f~~l~~~g~iy~~~ 153 (494)
T d1h3na3 138 WIFLKMWEKGLAYRAK 153 (494)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHhhhCCcEEeee
Confidence 9999999999999853
No 17
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]}
Probab=97.73 E-value=6.6e-06 Score=79.42 Aligned_cols=60 Identities=12% Similarity=0.179 Sum_probs=47.3
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC-ccccccCCCceeHHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG-KRLRTRFSEVVRLVD 404 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g-~kmSkR~G~~v~L~d 404 (426)
.+++|.+ ++|.||..|+..-..+++.+++. .+...|+++ +.+.+| +||||+.||.|.|.|
T Consensus 181 ~l~~~~v--p~G~DQ~~~i~l~Rdla~r~~~~------~~~~~~~p~--L~gldG~~KMSKS~~naI~L~d 241 (343)
T d1h3fa1 181 AIRADVE--MGGTDQRFNLLVGREVQRAYGQS------PQVCFLMPL--LVGLDGREKMSKSLDNYIGLTE 241 (343)
T ss_dssp HHTCSEE--EEEGGGHHHHHHHHHHHHHTTCC------CCEEEEECC--CBCTTSSSBCCGGGTCCCBTTS
T ss_pred hhccccc--ccccchHHHHHHHHHHHhhcCcc------ccceeeccc--cccccccchhhcccccceeeec
Confidence 3467766 59999999999889999999974 245566654 777778 499999999998865
No 18
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.27 E-value=0.00012 Score=70.17 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=46.0
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcccccc-CCCceeHHHHHHHHHHHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTR-FSEVVRLVDLLDEAKNRS 413 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR-~G~~v~L~dLlde~~~~a 413 (426)
.+++|.++ +|.||..|+..-+.+++.++.. .+...|+++ +.+.+|.||||+ .|+.|.|.|==+++.+..
T Consensus 173 ~~~ad~v~--~G~DQ~~~i~l~rd~a~r~~~~------~~~~l~~pl--l~~l~g~kmsks~~~~~I~l~D~~~~I~kKI 242 (339)
T d1n3la_ 173 YLKVDAQF--GGIDQRKIFTFAEKYLPALGYS------KRVHLMNPM--VPGLTGSKMSSSEEESKIDLLDRKEDVKKKL 242 (339)
T ss_dssp HTTCSEEE--EEGGGHHHHHHHHHHGGGGTCC------CCEEEEECC--CCCSSCC-------CCSCBTTCCHHHHHHHH
T ss_pred hccCCccc--cchhHHHHHHHHHHHHhhhccC------cceeeeecc--ccccccccccccchhhcccccCCHHHHHHHH
Confidence 36788775 9999999999888999988873 234555544 777788888875 699998866555554443
No 19
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=95.88 E-value=0.0012 Score=61.90 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=35.0
Q ss_pred cCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCc-cccccCCCceeHHHHHHHHHHHHH
Q 014355 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTRFSEVVRLVDLLDEAKNRSK 414 (426)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~-kmSkR~G~~v~L~dLlde~~~~a~ 414 (426)
+++|.+ +.|.||..|+.--..++ - ..+...|.+ ++.+.+|+ ||||+.||+|.|.|=-+++.++.+
T Consensus 162 ~~~~~~--~~G~DQ~~~~~l~rdl~---~-------~~~~~~~~~--~l~gldG~~KMSKS~~n~I~L~D~~e~I~~KI~ 227 (306)
T d1j1ua_ 162 LGVDVA--VGGMEQRKIHMLARELL---P-------KKVVCIHNP--VLTGLDGEGKMSSSKGNFIAVDDSPEEIRAKIK 227 (306)
T ss_dssp HTCSEE--EEEGGGHHHHHHHHHHS---S-------SCCEEEEEC--CCCCTTCCC-------CSCBTTCCHHHHHHHHH
T ss_pred cCccee--ccchhhHHHHHHhhhcc---c-------ccceecccc--cccCcccccccccccccccccCCCHHHHHHHHh
Confidence 467655 59999987775333332 1 123444543 47777885 999999999998765555555443
No 20
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}
Probab=95.11 E-value=0.0019 Score=63.66 Aligned_cols=35 Identities=9% Similarity=-0.035 Sum_probs=32.3
Q ss_pred EEEEcCCCccccccCCCceeHHHHHHHHHHHHHHH
Q 014355 382 GLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAV 416 (426)
Q Consensus 382 g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~ 416 (426)
|+|.+.+|+||||++||+|.-.|||++.+..|.+.
T Consensus 436 g~v~d~~g~KMSKSlGNVIdP~~iI~~YGADalRl 470 (494)
T d1h3na3 436 GTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARI 470 (494)
T ss_dssp SSEEEEEEEECCTTTTCCCBHHHHHHHSCHHHHHH
T ss_pred ccEEeCCceeCCCCCCCcCCHHHHHHHhCHHHHHH
Confidence 88999999999999999999999999988888774
No 21
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=78.14 E-value=0.68 Score=42.84 Aligned_cols=57 Identities=23% Similarity=0.124 Sum_probs=39.8
Q ss_pred eEEEEeeCCccccHHHHHHHHHHc-CCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHH
Q 014355 340 WIIYVTDVGQQLHFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (426)
Q Consensus 340 ~~i~V~g~~q~~hf~~~~~~~~~l-g~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~d 404 (426)
.-|-|-|.||.+.+..=....+.+ |.. .....+.+ ++.+.+|+||||+.||+|.|++
T Consensus 186 ~~iqiGGsDQ~~Ni~~Grdl~~~~~~~~------~~~~it~p--Ll~~~~G~Km~KS~~n~i~l~~ 243 (323)
T d1jila_ 186 CKIQVGGSDQWGNITSGIELMRRMYGQT------DAYGLTIP--LVTKSDGKKFGKSESGAVWLDA 243 (323)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHCCC------CCEEEEEC--CCBCTTSCBTTBCSSSBCBSST
T ss_pred chhhhhccccHHHhhhhhhhhhhhcccc------cceEEecc--cccchhhhhhhhcCCCCeeeec
Confidence 455678999887766555666654 542 12344444 4778899999999999998864
No 22
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}
Probab=77.48 E-value=0.63 Score=44.11 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=43.4
Q ss_pred EEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCC--ccccccCCC-ceeHHHHHHHHHHH
Q 014355 341 IIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDEAKNR 412 (426)
Q Consensus 341 ~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g--~kmSkR~G~-~v~L~dLlde~~~~ 412 (426)
++=.+|.||..|+.--+.+++.+|+. .+...|.++ +-+-+| .||||+.++ .|.|.|=-+++.+.
T Consensus 224 ~lvpvG~DQ~~h~~ltRDia~r~~~~------~p~~l~~~~--lpgL~G~~~KMSsS~~~s~I~l~D~~~~i~~K 290 (386)
T d1r6ta2 224 CLIPCAIDQDPYFRMTRDVAPRIGYP------KPALLHSTF--FPALQGAQTKMSASDPNSSIFLTDTAKQIKTK 290 (386)
T ss_dssp EEEEEEGGGHHHHHHHHHHGGGGTCC------CCEEEEECC--CEETTEEEEECCTTSTTCCCBTTCCHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHhCCC------Cceeecccc--ccCCCCcccccccCCCCceeeecCCHHHHHHH
Confidence 44578999999999989999999984 245566654 444444 478777655 68875544444433
No 23
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=76.80 E-value=0.57 Score=43.37 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=32.3
Q ss_pred EecCCCcCCC-ccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHH
Q 014355 133 DFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQF 181 (426)
Q Consensus 133 E~~SpNp~~p-lHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~ 181 (426)
=|++--||+| ||+||+=.. ..-|.|+.+||.|+ .-|||+-.++
T Consensus 34 ~Y~G~DPTa~sLHlGhlv~l----~~l~~~q~~Gh~~i--~LiG~~T~~i 77 (323)
T d1jila_ 34 LYCGADPTADSLHIGHLLPF----LTLRRFQEHGHRPI--VLIGGGTGMI 77 (323)
T ss_dssp EEEEECCSSSSCBHHHHHHH----HHHHHHHHTTCEEE--EEECTTGGGT
T ss_pred EEEcccCCCccccHHHHHHH----HHHHHHHHhCCceE--Eeehhhhhhc
Confidence 4778899999 999998665 34577888999885 4567765444
No 24
>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=70.33 E-value=1.6 Score=31.87 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHhc-CCCCCCCccccc-cc---CC--CCccccchhhHHHHHhhcCCCCCCCChHHHHHHHHHh
Q 014355 10 NVKRELEKVFDLALKAT-VPNETDVRPLIA-AC---TA--KFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKN 79 (426)
Q Consensus 10 ~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~-~~---~~--~~GD~~t~~a~~lak~~k~~~~~~~~P~~iA~~l~~~ 79 (426)
.+|+.++..|..+++.. +|.. +...++. -| .. +.||++.. |+.+.+.+..+.-..+++.++|..|+++
T Consensus 7 ~vkeei~~qi~~af~gA~FPI~-s~~eL~~alP~G~~t~c~~Gd~e~T-A~E~~k~l~~~DFP~ksae~lad~ii~r 81 (84)
T d1iioa_ 7 GVKEDIRGQIIGALAGADFPIN-SPEELMAALPNGPDTTCKSGDVELK-ASDAGQVLTADDFPFKSAEEVADTIVNK 81 (84)
T ss_dssp SHHHHHHHHHHHHHTTSSSTTB-HHHHHHHHCTTSSCCCCCBTTBCCC-TTTTGGGSCGGGSBCSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCCCC-CHHHHHHhCCCCCCCceecCCEeee-HHHHHhhcCcccCCCCCHHHHHHHHHHh
Confidence 68999999999888753 3321 1111221 12 22 45999885 7888888876555668999999999865
No 25
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}
Probab=65.59 E-value=2.2 Score=39.13 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=36.5
Q ss_pred eEEEEeeCCccccHHHHHHHHHH-cCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHH
Q 014355 340 WIIYVTDVGQQLHFDMVFSAAKR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 403 (426)
Q Consensus 340 ~~i~V~g~~q~~hf~~~~~~~~~-lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~ 403 (426)
..+-+-|.||-+....=....+. .|-. .....++|. +.+.+|+||||..|+.|.|+
T Consensus 186 ~~~qiGGsDQ~gNi~~G~dli~~~~~~~------~~~~lT~PL--L~~~~G~K~~ks~~n~i~l~ 242 (319)
T d2ts1a_ 186 CRLQIGGSDQWGNITAGLELIRKTKGEA------RAFGLTIPL--VTKADGTKFGKTESGTIWLD 242 (319)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHC--------CCEEEEECC--CCCTTSCCTTCCSSCCCBSS
T ss_pred CchhhccchhhhHHHHHHHHHHHhcccc------cceEeeccc--ccccccceeeecCCCCcccc
Confidence 45567888887665554455443 3421 123444443 78899999999999999885
No 26
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=62.90 E-value=1.3 Score=40.62 Aligned_cols=78 Identities=14% Similarity=0.073 Sum_probs=43.5
Q ss_pred hcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEE-e-EEEEcC-CCccccccCCC---ceeHHHHHHH
Q 014355 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVG-F-GLVLGE-DGKRLRTRFSE---VVRLVDLLDE 408 (426)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~-~-g~v~~~-~g~kmSkR~G~---~v~L~dLlde 408 (426)
.+++|.+ .+|.||..|+..-+.++..+++........+...... . .++.+. +++||||+.++ +|.|.|=-++
T Consensus 135 ~~~~d~v--pvG~DQ~~h~eltRdia~r~n~~~~~~~~~~~~~i~~~~~~~~~~~d~~~kmskS~~~~~~~I~l~D~~~~ 212 (326)
T d1i6la_ 135 LYNTDIV--PVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKT 212 (326)
T ss_dssp TTTCSEE--ECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHH
T ss_pred hcCcccc--ccccchHHHHHHHHHHHHHhhhccCCcccccccccccccceeeecCCccccccccCCCccceeeccCCHHH
Confidence 4678866 4999999999988899988774211000001000000 0 012222 34689998887 5666555555
Q ss_pred HHHHHH
Q 014355 409 AKNRSK 414 (426)
Q Consensus 409 ~~~~a~ 414 (426)
+.+...
T Consensus 213 i~kKI~ 218 (326)
T d1i6la_ 213 IEKKIK 218 (326)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 27
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.37 E-value=4.7 Score=37.71 Aligned_cols=43 Identities=26% Similarity=0.315 Sum_probs=29.9
Q ss_pred EecCCCcCCC-ccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhH
Q 014355 133 DFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQ 180 (426)
Q Consensus 133 E~~SpNp~~p-lHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q 180 (426)
=|++--|+|+ ||+||+-..+. +..+....|++|.. .+.|+...
T Consensus 77 vytG~~PSg~~lHlGh~v~~~~---~~~~q~~~~~~v~i--~iaD~~a~ 120 (386)
T d1r6ta2 77 LYTGRGPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVI--QMTDDEKY 120 (386)
T ss_dssp EEEEECCCTTCCBGGGHHHHHH---HHHHHHHHTCCEEE--EECHHHHH
T ss_pred EEeccCCCCchhHHHHHHHHHH---HHHHHHhcccceEE--EecchHhh
Confidence 3678889995 99999865543 44445567888764 58887543
No 28
>d1d4aa_ c.23.5.3 (A:) NAD(P)H:quinone reductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.35 E-value=10 Score=33.38 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=33.9
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEec
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRN 172 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~ 172 (426)
+|||+|=++||+|. -.|..+-+.+..-|+..|++|...+
T Consensus 2 ~KKiLiI~ahP~~~-------S~~~aL~~~~~~~l~~~G~eV~~~D 40 (273)
T d1d4aa_ 2 GRRALIVLAHSERT-------SFNYAMKEAAAAALKKKGWEVVESD 40 (273)
T ss_dssp CCEEEEEECCSCTT-------SHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCeEEEEEcCCCCc-------cHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 58999999999974 3677899999999999999998775
No 29
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}
Probab=47.53 E-value=4.2 Score=37.16 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=31.5
Q ss_pred EecCCCcCCC-ccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHH
Q 014355 133 DFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQF 181 (426)
Q Consensus 133 E~~SpNp~~p-lHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~ 181 (426)
=|++--||++ |||||+=.. ..-+.|+..||.|+.. +||+-.++
T Consensus 33 ~Y~G~DPTa~sLHlGhlv~l----~~l~~~q~~Gh~~i~L--iG~~T~~I 76 (319)
T d2ts1a_ 33 LYCGFDPTADSLHIGHLATI----LTMRRFQQAGHRPIAL--VGGATGLI 76 (319)
T ss_dssp EEEEECCSSSSCBGGGHHHH----HHHHHHHHTTCEEEEE--ECTTGGGT
T ss_pred EEEeecCCCCcchHHHHHHH----HHHHHHHHcCCceeEE--eeehhhcc
Confidence 3778889988 999998665 3566778889988876 45554333
No 30
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=44.20 E-value=2.2 Score=38.95 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=25.0
Q ss_pred ecCCCcCCCccchhHHHHHHHHHHHHHHH-HCCCeeEEecccCCc
Q 014355 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLE-FSNVEVLRRNHVGDW 177 (426)
Q Consensus 134 ~~SpNp~~plHiGHlRsaiiGD~Larll~-~~G~~V~~~~yv~D~ 177 (426)
||+--|+|.+|+||.- | +|.++.. ..|+++ ...|-||
T Consensus 5 ~tG~~PSG~~HlG~~~----g-~i~~~~~lq~~~~~--~i~iAD~ 42 (326)
T d1i6la_ 5 FSGIQPSGVITIGNYI----G-ALRQFVELQHEYNC--YFCIVDQ 42 (326)
T ss_dssp EEEECCCSCCBHHHHH----H-THHHHHHHTTTSEE--EEEECHH
T ss_pred EeCcCCCCccHHHHHH----H-HHHHHHHHhCCCCE--EEEeehH
Confidence 5788899999999964 3 3455533 236665 4567775
No 31
>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.20 E-value=16 Score=30.53 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=32.8
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEec
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRN 172 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~ 172 (426)
|+||+|=++||++ .-.|..+.+.+..-++..|++|...+
T Consensus 2 ~mKiLiI~ghp~~-------~S~t~~l~~~~~~~~~~~g~ev~~~d 40 (230)
T d2qwxa1 2 GKKVLIVYAHQEP-------KSFNGSLKNVAVDELSRQGCTVTVSD 40 (230)
T ss_dssp CCEEEEEECCSCT-------TSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEEeCCCC-------ccHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 6899999999986 33566788999999999999988866
No 32
>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=35.02 E-value=22 Score=27.50 Aligned_cols=37 Identities=19% Similarity=0.056 Sum_probs=27.0
Q ss_pred CceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEec
Q 014355 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRN 172 (426)
Q Consensus 127 ~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~ 172 (426)
.|||-|-..|-|| +|.||+. .+.++++.++.+++...
T Consensus 1 ~kkIalfgGSFdP---~H~GH~~------ii~~a~~~~~~~~V~~~ 37 (189)
T d1kama_ 1 SKKIGIFGGTFDP---PHNGHLL------MANEVLYQAGLDEIWFM 37 (189)
T ss_dssp CCEEEEEEECCSS---CCHHHHH------HHHHHHHHTTCSEEEEE
T ss_pred CCEEEEeccCcCC---CCHHHHH------HHHHHHHHcCCCEEEEE
Confidence 3688888999985 8999985 34566777776655544
No 33
>d1sw5a_ c.94.1.1 (A:) Osmoprotection protein ProX {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=33.34 E-value=21 Score=30.32 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHH
Q 014355 148 LRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLI 185 (426)
Q Consensus 148 lRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~ 185 (426)
.=+.+++..++.+|+..||+|..+..+++...++.-+.
T Consensus 11 te~~v~a~i~~~~Le~~Gy~ve~~~~~~~~~~~~~al~ 48 (270)
T d1sw5a_ 11 NEQYILANMIAILLEENGYKAEVKEGLGGTLVNYEALK 48 (270)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEECTTCCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCCceEEEecCCccHHHHHHHH
Confidence 34678999999999999999999998888776666443
No 34
>d1r9la_ c.94.1.1 (A:) Glycine betaine-binding periplasmic protein ProX {Escherichia coli [TaxId: 562]}
Probab=26.95 E-value=20 Score=31.12 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHCCCeeEEecccCCchhH
Q 014355 148 LRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQ 180 (426)
Q Consensus 148 lRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q 180 (426)
.=+.|++..++.+|+..||+|++...+ +.+..
T Consensus 18 te~~i~~ei~~q~Le~~Gy~V~~~~~~-~~~~~ 49 (309)
T d1r9la_ 18 TEETFQTLLVSRALEKLGYTVNKPSEV-DYNVG 49 (309)
T ss_dssp GGGHHHHHHHHHHHHHTTCEECCCEEC-CHHHH
T ss_pred cHHHHHHHHHHHHHHHcCCceeeecCC-ChHHH
Confidence 467899999999999999999866544 44433
No 35
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=26.37 E-value=83 Score=20.74 Aligned_cols=51 Identities=12% Similarity=0.188 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHcCCceeeeccccccCcHHHHHHHHHHCCCEEEeCCeEEE
Q 014355 242 HEAWAQICEISRKE------FDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVI 301 (426)
Q Consensus 242 ~~~w~~~~~~~~~~------~~~~~~~Lgi~fd~~~Es~~~~~v~~vi~~L~~~g~~~~~dGa~~~ 301 (426)
.++|+++...+.++ .++..+.+|+.- ..+.+++..|...|.+..-....||
T Consensus 6 ~~l~~~I~~~~~~~g~~PP~vrdl~~~l~~~e---------~~~~~lL~~l~~~G~lvkI~~d~yf 62 (64)
T d1lvaa3 6 KKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDP---------SELEELLHYLVREGVLVKINDEFYW 62 (64)
T ss_dssp HHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCH---------HHHHHHHHHHHHTTSEEESSSSBEE
T ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHhCCCH---------HHHHHHHHHHHHCCCEEEecccccc
Confidence 46777775544432 334444444422 4578999999999988765544444
No 36
>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]}
Probab=20.59 E-value=22 Score=26.97 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=16.5
Q ss_pred ceEEEEecCCCcCCCccchhHHHH
Q 014355 128 KKAVVDFSSPNIAKEMHVGHLRST 151 (426)
Q Consensus 128 ~kV~VE~~SpNp~~plHiGHlRsa 151 (426)
++|.|-..|=|| +|.||.+-.
T Consensus 2 kkigl~~G~FdP---~H~GH~~l~ 22 (163)
T d1lw7a1 2 KKVGVIFGKFYP---VHTGHINMI 22 (163)
T ss_dssp CCEEEEEECCSS---CCHHHHHHH
T ss_pred CeEEEEeeeCCC---CCHHHHHHH
Confidence 577788888886 799997654
Done!