BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014356
         (426 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IZV|A Chain A, Crystal Structure Of Socs-4 In Complex With Elongin-B And
           Elongin-C At 2.55a Resolution
          Length = 187

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 131 PEGTIPVRRTKEDDVLRASSVKRYGKKKHRSIPQ 164
           PEGT  +R + ++D L + S +RY +  H  I Q
Sbjct: 54  PEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQ 87


>pdb|2VIF|A Chain A, Crystal Structure Of Socs6 Sh2 Domain In Complex With A
           C-Kit Phosphopeptide
          Length = 141

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 119 PINQLWHANGK---CPEGTIPVRRTKEDDVLRASSVKRYGKKKHRSIPQPRS-----ADP 170
           PI + W A GK    P+G+  VR + +D  L + S + +GK  H  I            P
Sbjct: 30  PITR-WEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHSNGRFSFYEQP 88

Query: 171 DLTNESGHQHAIAYVEGDKYYGA 193
           D+   +     I +  GD   GA
Sbjct: 89  DVEGHTSIVDLIEHSIGDSENGA 111


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,535,994
Number of Sequences: 62578
Number of extensions: 649245
Number of successful extensions: 1456
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1455
Number of HSP's gapped (non-prelim): 8
length of query: 426
length of database: 14,973,337
effective HSP length: 102
effective length of query: 324
effective length of database: 8,590,381
effective search space: 2783283444
effective search space used: 2783283444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)