BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014356
         (426 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7M878|PANB_WOLSU 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Wolinella
           succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 /
           NCTC 11488 / FDC 602W) GN=panB PE=3 SV=1
          Length = 262

 Score = 40.0 bits (92), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 24/136 (17%)

Query: 230 EAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGF-IQINSEIAMGASISPVSSY 288
           E G++V     G+  + L     + A + +G + L+  G   ++  E+A   S+  +   
Sbjct: 146 EGGYKVKGKEEGEAQSLL---RDAKALEESGVFALVLEGVKAEVAQEVARSVSVPVIGIG 202

Query: 289 RNSQYDISILIWKDPTEGHWWMQFGNDYVLGYWPSFLFSYLADSASMIEWGGEVVNSEAD 348
             SQ D  +L+W D             +  G+ P F+  YL + AS+I  G         
Sbjct: 203 SGSQVDGQVLVWSDML----------GFFEGFTPKFVRRYL-EGASLIRQG--------- 242

Query: 349 GRHTSTQMGSGRFPEE 364
            R  +  +  GRFP E
Sbjct: 243 VREYAKDVREGRFPSE 258


>sp|Q32SG6|HIRA_MAIZE Protein HIRA OS=Zea mays PE=1 SV=1
          Length = 964

 Score = 33.1 bits (74), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 8/62 (12%)

Query: 263 NLLCSGFIQINSEIAMGASISPVSSYRNSQYD-ISILIWKD-------PTEGHWWMQFGN 314
           N +C+  ++ ++ +  G +  P+ S+  SQ D  +++IW+         TEGHW    G+
Sbjct: 156 NGICTAVLRGHTSLVKGVTWDPIGSFIASQSDDKTVMIWRTSDWSLAHKTEGHWTKSLGS 215

Query: 315 DY 316
            +
Sbjct: 216 TF 217


>sp|A4XPL2|F16PA_PSEMY Fructose-1,6-bisphosphatase class 1 OS=Pseudomonas mendocina
           (strain ymp) GN=fbp PE=3 SV=1
          Length = 335

 Score = 32.0 bits (71), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 337 EWGGEVVNSEADGRHTSTQMGSGRFPEEGFGKASYFRNVQVVDGSNNLKAPKGIGTFTEQ 396
           EWGG +    ++    + Q+  G++P     K +Y      +DGS+N+     +GT    
Sbjct: 79  EWGGHLAGMASEEMDNAYQI-PGKYP-----KGAYLLVFDPLDGSSNIDVNVSVGTIFSV 132

Query: 397 SNCYDVQTGSNGDWGHYFYF 416
             C D + G  GD G   + 
Sbjct: 133 LRCPD-RNGDTGDLGEDAFL 151


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.134    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,387,436
Number of Sequences: 539616
Number of extensions: 7735928
Number of successful extensions: 14640
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 14637
Number of HSP's gapped (non-prelim): 9
length of query: 426
length of database: 191,569,459
effective HSP length: 120
effective length of query: 306
effective length of database: 126,815,539
effective search space: 38805554934
effective search space used: 38805554934
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)