BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014357
(426 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PDZ|A Chain A, X-Ray Structure And Catalytic Mechanism Of Lobster Enolase
pdb|1PDY|A Chain A, X-Ray Structure And Catalytic Mechanism Of Lobster Enolase
Length = 434
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 147 LEEVAVGKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDDQTAEYCKTNDIPVYQ 206
L+ AVG E A N K L++ IK+ G T + + +D +E+ K N+I Y
Sbjct: 202 LDATAVGDEGGFAPNILNNKDALDLIQEAIKKAGYTGKIEIGMDVAASEFYKQNNI--YD 259
Query: 207 RDPDEGIDSIARKGGNHAVSGLKFRVLREFLQLDYSVLLSDIDIVFLQNPFE 258
D A G+ +SG + R + Y D IV +++PF+
Sbjct: 260 LDF-----KTANNDGSQKISGDQLRDM-------YMEFCKDFPIVSIEDPFD 299
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 27/171 (15%)
Query: 76 SLTEKNAELQKQVRQLTAK--LRLAEQGKDQAQKQVMVLGEQHKVGPFGTVKALRTNPTV 133
SLTE+ +LQ R+ + L +A++ ++ + V+ + H+VG +
Sbjct: 4 SLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAI--------- 54
Query: 134 VPDESVNPRLAKILEEVAVGKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDDQT 193
+P+E L K+L+EV VG+EL A M +GIT L+ ++Q
Sbjct: 55 IPEEYGGMGL-KMLDEVIVGEELAYACMGIYTIPM-------ASDLGITPVLLAGTEEQK 106
Query: 194 AEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGLKFRVLREFLQLDYSVL 244
+ + P+ ++ P +++ G + LK R +R Q D+ VL
Sbjct: 107 ERFLR----PLTEK-PALAAFALSEPGNGSDAAALKTRAIR---QGDHYVL 149
>pdb|3VXD|A Chain A, Crystal Structure Of Unsaturated Glucuronyl Hydrolase
Mutant D115n From Streptcoccus Agalactiae
pdb|3VXD|B Chain B, Crystal Structure Of Unsaturated Glucuronyl Hydrolase
Mutant D115n From Streptcoccus Agalactiae
pdb|3VXD|C Chain C, Crystal Structure Of Unsaturated Glucuronyl Hydrolase
Mutant D115n From Streptcoccus Agalactiae
pdb|3VXD|D Chain D, Crystal Structure Of Unsaturated Glucuronyl Hydrolase
Mutant D115n From Streptcoccus Agalactiae
Length = 398
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 366 FMNSKVLFKTVRKDANLKKLKPVVVHVNYHPDKFPRMLAIVEFY-VNGKQDALDGFPVGS 424
F+NS++L K ++A K LK + ++++Y +++P Y V + +GF G
Sbjct: 18 FLNSRLLTKIEVEEAIEKALKQLYINIDYFGEEYPTPATFNNIYKVMDNTEWTNGFWTGC 77
Query: 425 DW 426
W
Sbjct: 78 LW 79
>pdb|3ANI|A Chain A, Crystal Structure Of Unsaturated Glucuronyl Hydrolase
Mutant D175n From Streptcoccus Agalactiae
pdb|3ANK|A Chain A, Crystal Structure Of Unsaturated Glucuronyl Hydrolase
Mutant D175n From Streptcoccus Agalactiae Complexed With
Dglca-Galnac6s
Length = 398
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 366 FMNSKVLFKTVRKDANLKKLKPVVVHVNYHPDKFPRMLAIVEFY-VNGKQDALDGFPVGS 424
F+NS++L K ++A K LK + ++++Y +++P Y V + +GF G
Sbjct: 18 FLNSRLLTKIEVEEAIEKALKQLYINIDYFGEEYPTPATFNNIYKVMDNTEWTNGFWTGC 77
Query: 425 DW 426
W
Sbjct: 78 LW 79
>pdb|3ANJ|A Chain A, Crystal Structure Of Unsaturated Glucuronyl Hydrolase From
Streptcoccus Agalactiae
Length = 398
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 366 FMNSKVLFKTVRKDANLKKLKPVVVHVNYHPDKFPRMLAIVEFY-VNGKQDALDGFPVGS 424
F+NS++L K ++A K LK + ++++Y +++P Y V + +GF G
Sbjct: 18 FLNSRLLTKIEVEEAIEKALKQLYINIDYFGEEYPTPATFNNIYKVMDNTEWTNGFWTGC 77
Query: 425 DW 426
W
Sbjct: 78 LW 79
>pdb|2ZZR|A Chain A, Crystal Structure Of Unsaturated Glucuronyl Hydrolase From
Streptcoccus Agalactiae
Length = 397
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 366 FMNSKVLFKTVRKDANLKKLKPVVVHVNYHPDKFPRMLAIVEFY-VNGKQDALDGFPVGS 424
F+NS++L K ++A K LK + ++++Y +++P Y V + +GF G
Sbjct: 17 FLNSRLLTKIEVEEAIEKALKQLYINIDYFGEEYPTPATFNNIYKVMDNTEWTNGFWTGC 76
Query: 425 DW 426
W
Sbjct: 77 LW 78
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 47 DRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQ---KQVRQLTAKLRLAEQGKD 103
+R+ +KK +S ER+ ++++IA LTE+ A+L+ ++ R++ KLR A+ D
Sbjct: 416 EREALKKE----KDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLD 471
Query: 104 QAQKQVMVLGEQH 116
+ ++++ + Q+
Sbjct: 472 EVRREIELAERQY 484
>pdb|3GJX|A Chain A, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|D Chain D, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3NBY|A Chain A, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|D Chain D, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC1|A Chain A, Crystal Structure Of The Crm1-Rangtp Complex
Length = 1073
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 355 HASKRVMDFYLFMNSKVLFKTVR-----KDANLKKLKPVVVHVNYHPDKFPRMLAIVEFY 409
HA+++++DF ++ +L V + A + + V+ H+ HPD + R+ I+EF
Sbjct: 13 HAARQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFS 72
Query: 410 VN 411
N
Sbjct: 73 QN 74
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 47 DRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQ---KQVRQLTAKLRLAEQGKD 103
+R+ +KK +S ER+ ++++IA LTE+ A+L+ ++ R++ KLR A+ D
Sbjct: 279 EREALKKE----KDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLD 334
Query: 104 QAQKQVMVLGEQH 116
+ ++++ + Q+
Sbjct: 335 EVRREIELAERQY 347
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 1071
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 355 HASKRVMDFYLFMNSKVLFKTVR-----KDANLKKLKPVVVHVNYHPDKFPRMLAIVEFY 409
HA+++++DF ++ +L V + A + + V+ H+ HPD + R+ I+EF
Sbjct: 11 HAARQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFS 70
Query: 410 VN 411
N
Sbjct: 71 QN 72
>pdb|2P9B|A Chain A, Crystal Structure Of Putative Prolidase From
Bifidobacterium Longum
Length = 458
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 139 VNPRLAK--------ILEEVAVGKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALD 190
+NP+LA +GK A N ++LE T I+ +G Y VV L
Sbjct: 87 LNPKLATPKGQRXVATFAHSPLGKPYXAATVKHNATTLLESGVTTIRTLGDVGYEVVTLR 146
Query: 191 DQ 192
DQ
Sbjct: 147 DQ 148
>pdb|4FD4|A Chain A, Crystal Structure Of Mosquito Arylalkylamine
N-Acetyltransferase Like 5b
pdb|4FD4|B Chain B, Crystal Structure Of Mosquito Arylalkylamine
N-Acetyltransferase Like 5b
Length = 217
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 318 IELLDRVAD---RLGKEKAWDQAVFNEELFFPSHPGYYGLHASKRVMDFYLFMNSKVLFK 374
+ LL+R AD R G EKA+ + + P Y G +R++ F + ++ K+ FK
Sbjct: 108 LALLERTADVCGRYGLEKAYHVHILAVD------PTYRGHSLGQRLLQFQMDLSKKLGFK 161
Query: 375 TVRKD 379
+ D
Sbjct: 162 AISGD 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,506,687
Number of Sequences: 62578
Number of extensions: 527295
Number of successful extensions: 1177
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1174
Number of HSP's gapped (non-prelim): 14
length of query: 426
length of database: 14,973,337
effective HSP length: 102
effective length of query: 324
effective length of database: 8,590,381
effective search space: 2783283444
effective search space used: 2783283444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)