Query 014357
Match_columns 426
No_of_seqs 184 out of 384
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:20:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03407 Nucleotid_trans: Nucl 100.0 1.8E-39 3.9E-44 305.7 17.3 200 181-402 3-212 (212)
2 cd02537 GT8_Glycogenin Glycoge 98.1 6.6E-05 1.4E-09 72.6 15.3 191 160-394 7-207 (240)
3 PLN00176 galactinol synthase 98.1 0.00034 7.3E-09 71.2 19.4 187 153-344 21-224 (333)
4 cd04194 GT8_A4GalT_like A4GalT 97.9 9.8E-05 2.1E-09 71.2 11.4 175 157-344 3-197 (248)
5 cd00505 Glyco_transf_8 Members 97.8 0.0021 4.5E-08 62.1 19.1 218 156-395 3-240 (246)
6 PF01501 Glyco_transf_8: Glyco 97.7 0.00029 6.4E-09 66.4 11.0 215 157-394 2-241 (250)
7 PF05637 Glyco_transf_34: gala 97.6 6.5E-05 1.4E-09 73.0 5.2 205 154-395 4-232 (239)
8 cd06914 GT8_GNT1 GNT1 is a fun 97.3 0.003 6.6E-08 62.9 12.7 150 160-344 7-171 (278)
9 cd06431 GT8_LARGE_C LARGE cata 96.9 0.041 8.8E-07 54.8 16.4 238 156-415 4-273 (280)
10 PLN03181 glycosyltransferase; 96.7 0.04 8.6E-07 57.4 14.4 147 152-344 127-306 (453)
11 cd06430 GT8_like_2 GT8_like_2 96.6 0.021 4.7E-07 57.5 11.2 151 233-406 90-269 (304)
12 PLN03182 xyloglucan 6-xylosylt 96.4 0.074 1.6E-06 55.3 14.2 122 194-344 157-305 (429)
13 PRK00888 ftsB cell division pr 96.1 0.081 1.8E-06 45.2 10.6 30 64-93 33-62 (105)
14 PF06295 DUF1043: Protein of u 96.0 0.062 1.3E-06 47.5 9.8 49 16-90 2-50 (128)
15 PRK11677 hypothetical protein; 95.6 0.041 8.9E-07 49.1 6.9 49 16-90 6-54 (134)
16 PRK15171 lipopolysaccharide 1, 95.5 0.63 1.4E-05 47.5 16.2 106 155-262 26-143 (334)
17 COG1442 RfaJ Lipopolysaccharid 95.2 0.2 4.3E-06 51.1 11.4 103 157-261 5-119 (325)
18 PLN02910 polygalacturonate 4-a 94.7 0.97 2.1E-05 49.6 15.3 326 65-415 254-648 (657)
19 PF06305 DUF1049: Protein of u 94.5 0.046 9.9E-07 42.4 3.8 22 70-91 46-67 (68)
20 PF11382 DUF3186: Protein of u 94.4 0.15 3.2E-06 51.6 7.9 36 68-103 35-70 (308)
21 PRK15396 murein lipoprotein; P 94.3 0.36 7.7E-06 39.2 8.5 59 59-117 19-77 (78)
22 cd06432 GT8_HUGT1_C_like The C 94.3 1.2 2.6E-05 43.5 14.0 217 156-398 3-243 (248)
23 PHA02047 phage lambda Rz1-like 94.2 0.23 4.9E-06 41.6 7.3 31 64-94 33-63 (101)
24 PLN02742 Probable galacturonos 93.8 5 0.00011 43.5 18.3 172 225-415 339-526 (534)
25 PF06305 DUF1049: Protein of u 93.6 0.21 4.5E-06 38.6 5.7 22 64-85 47-68 (68)
26 PLN02523 galacturonosyltransfe 93.5 8.3 0.00018 42.0 19.3 168 227-415 365-550 (559)
27 cd06429 GT8_like_1 GT8_like_1 93.3 0.37 7.9E-06 47.5 8.3 90 224-344 99-199 (257)
28 PLN02829 Probable galacturonos 93.2 2.4 5.2E-05 46.6 14.9 170 226-414 444-629 (639)
29 PF02183 HALZ: Homeobox associ 93.2 0.15 3.3E-06 37.0 4.1 29 68-96 15-43 (45)
30 PF10883 DUF2681: Protein of u 92.8 0.68 1.5E-05 38.4 7.9 14 21-34 9-22 (87)
31 PF12732 YtxH: YtxH-like prote 92.8 1.7 3.7E-05 34.5 10.0 18 17-34 2-19 (74)
32 PF06005 DUF904: Protein of un 92.3 0.81 1.8E-05 36.6 7.5 48 64-111 17-64 (72)
33 PLN02718 Probable galacturonos 92.1 21 0.00046 39.3 20.4 169 224-415 403-594 (603)
34 PLN02769 Probable galacturonos 91.6 10 0.00022 42.0 17.2 164 225-415 438-621 (629)
35 TIGR02209 ftsL_broad cell divi 91.1 0.66 1.4E-05 37.4 6.0 34 64-97 30-63 (85)
36 PF04728 LPP: Lipoprotein leuc 90.8 1.4 2.9E-05 33.6 6.9 53 64-116 2-54 (56)
37 TIGR00219 mreC rod shape-deter 90.8 0.85 1.8E-05 45.6 7.7 44 72-115 66-112 (283)
38 PLN02867 Probable galacturonos 90.8 25 0.00053 38.4 18.9 177 220-414 325-525 (535)
39 PF03314 DUF273: Protein of un 90.7 0.72 1.6E-05 44.2 6.6 91 225-343 27-125 (222)
40 PF11853 DUF3373: Protein of u 90.4 0.34 7.4E-06 51.8 4.6 36 64-100 24-59 (489)
41 PRK10884 SH3 domain-containing 89.9 0.98 2.1E-05 43.2 7.0 15 63-77 91-105 (206)
42 PF11471 Sugarporin_N: Maltopo 89.8 1.8 3.9E-05 33.4 7.0 27 64-90 31-57 (60)
43 COG3879 Uncharacterized protei 89.7 3 6.5E-05 40.9 10.1 34 66-99 51-84 (247)
44 PF04156 IncA: IncA protein; 89.2 2 4.2E-05 39.9 8.3 52 65-116 88-139 (191)
45 PF14362 DUF4407: Domain of un 89.2 0.7 1.5E-05 46.2 5.6 21 14-34 85-105 (301)
46 PF06156 DUF972: Protein of un 88.8 1.5 3.2E-05 37.7 6.5 36 65-100 22-57 (107)
47 smart00338 BRLZ basic region l 88.8 1.3 2.8E-05 34.1 5.7 36 65-100 26-61 (65)
48 PRK14872 rod shape-determining 88.5 1.5 3.3E-05 44.9 7.5 31 72-102 57-87 (337)
49 PF04977 DivIC: Septum formati 88.2 0.52 1.1E-05 37.2 3.2 27 65-91 24-50 (80)
50 PF12718 Tropomyosin_1: Tropom 88.0 1.9 4.2E-05 38.8 7.1 53 64-116 13-65 (143)
51 PRK13729 conjugal transfer pil 87.6 1.6 3.4E-05 46.6 7.2 54 62-115 73-126 (475)
52 PF07047 OPA3: Optic atrophy 3 87.6 1.1 2.3E-05 40.0 5.1 53 18-93 81-133 (134)
53 PF04156 IncA: IncA protein; 87.5 1.3 2.8E-05 41.1 5.9 55 62-116 78-132 (191)
54 PF11051 Mannosyl_trans3: Mann 87.3 9.9 0.00021 37.6 12.4 97 157-262 4-113 (271)
55 PF06156 DUF972: Protein of un 87.1 5.4 0.00012 34.3 9.0 51 64-114 7-57 (107)
56 PRK13922 rod shape-determining 87.0 2 4.3E-05 42.4 7.2 34 72-105 69-102 (276)
57 COG2919 Septum formation initi 86.0 6.6 0.00014 34.1 9.1 55 64-119 49-104 (117)
58 TIGR02449 conserved hypothetic 85.9 4.6 0.0001 31.7 7.2 53 64-116 6-58 (65)
59 KOG4748 Subunit of Golgi manno 85.2 8.9 0.00019 39.7 10.9 176 194-395 132-333 (364)
60 PF00170 bZIP_1: bZIP transcri 85.1 2.9 6.4E-05 32.1 5.8 35 65-99 26-60 (64)
61 COG4980 GvpP Gas vesicle prote 84.8 3.9 8.5E-05 35.6 7.0 23 12-34 3-25 (115)
62 PRK10803 tol-pal system protei 84.5 6 0.00013 39.1 9.2 45 69-113 58-102 (263)
63 PRK15422 septal ring assembly 84.2 5.7 0.00012 32.3 7.1 46 64-109 17-69 (79)
64 PF15058 Speriolin_N: Sperioli 84.2 1.5 3.3E-05 41.3 4.5 28 70-97 10-37 (200)
65 PF11932 DUF3450: Protein of u 84.0 2.2 4.7E-05 41.6 5.8 50 63-112 40-89 (251)
66 PRK13169 DNA replication intia 83.6 2.7 5.8E-05 36.4 5.5 47 64-110 7-53 (110)
67 TIGR00998 8a0101 efflux pump m 82.6 7 0.00015 39.1 9.0 56 66-121 81-143 (334)
68 PF03962 Mnd1: Mnd1 family; I 82.6 3.5 7.6E-05 38.8 6.3 46 60-105 57-102 (188)
69 PF05377 FlaC_arch: Flagella a 82.6 3.9 8.5E-05 31.0 5.3 34 66-99 1-34 (55)
70 PF06103 DUF948: Bacterial pro 82.4 6.7 0.00015 32.0 7.3 35 64-98 32-66 (90)
71 COG3883 Uncharacterized protei 82.2 6.1 0.00013 39.2 8.0 52 65-116 45-96 (265)
72 PF04977 DivIC: Septum formati 82.0 5.9 0.00013 31.0 6.6 40 64-103 16-55 (80)
73 COG3074 Uncharacterized protei 81.9 6 0.00013 31.4 6.2 43 64-106 17-59 (79)
74 PRK00888 ftsB cell division pr 81.8 2.6 5.6E-05 36.0 4.7 43 64-106 26-68 (105)
75 COG4839 FtsL Protein required 81.7 3.9 8.4E-05 35.8 5.7 39 64-102 66-104 (120)
76 PF07716 bZIP_2: Basic region 81.4 3.6 7.8E-05 30.6 4.8 29 65-93 25-53 (54)
77 COG3105 Uncharacterized protei 81.3 16 0.00034 32.6 9.3 19 16-34 11-29 (138)
78 PRK15136 multidrug efflux syst 81.2 7.2 0.00016 40.6 8.7 56 66-121 100-155 (390)
79 PF05529 Bap31: B-cell recepto 80.9 7.1 0.00015 36.4 7.8 40 77-116 152-191 (192)
80 PRK09973 putative outer membra 80.9 7.3 0.00016 32.2 6.8 48 59-106 18-65 (85)
81 PF04880 NUDE_C: NUDE protein, 80.8 1.2 2.5E-05 41.3 2.4 40 64-103 13-55 (166)
82 KOG2264 Exostosin EXT1L [Signa 80.6 5.3 0.00012 43.4 7.4 54 66-119 101-154 (907)
83 PF06295 DUF1043: Protein of u 80.0 4.3 9.2E-05 35.8 5.6 15 20-34 2-16 (128)
84 PF08912 Rho_Binding: Rho Bind 79.9 6.5 0.00014 31.2 5.9 33 70-102 1-33 (69)
85 PHA01750 hypothetical protein 79.7 3.4 7.5E-05 32.4 4.2 30 67-96 44-73 (75)
86 PF07106 TBPIP: Tat binding pr 79.5 5.5 0.00012 36.4 6.4 40 62-101 69-108 (169)
87 PF08317 Spc7: Spc7 kinetochor 79.3 5.6 0.00012 40.4 7.0 53 63-115 207-259 (325)
88 PF04111 APG6: Autophagy prote 78.3 5.8 0.00013 40.3 6.7 56 118-192 147-204 (314)
89 PF13334 DUF4094: Domain of un 78.0 9.6 0.00021 32.0 6.8 43 58-100 48-94 (95)
90 smart00340 HALZ homeobox assoc 77.7 4.1 9E-05 29.2 3.8 26 68-93 8-33 (44)
91 PRK13169 DNA replication intia 77.6 14 0.00029 32.0 7.8 37 64-100 21-57 (110)
92 PF10828 DUF2570: Protein of u 76.9 15 0.00032 31.5 7.9 27 65-91 32-58 (110)
93 PF12709 Kinetocho_Slk19: Cent 76.4 11 0.00024 31.3 6.6 42 64-105 33-82 (87)
94 PRK10884 SH3 domain-containing 76.1 9.8 0.00021 36.4 7.2 41 66-106 126-166 (206)
95 PF14193 DUF4315: Domain of un 75.7 7.4 0.00016 32.0 5.4 34 66-99 2-35 (83)
96 TIGR02894 DNA_bind_RsfA transc 75.4 6.5 0.00014 36.2 5.5 23 73-95 105-127 (161)
97 PF10211 Ax_dynein_light: Axon 75.2 9 0.0002 36.1 6.7 40 66-105 121-160 (189)
98 TIGR02338 gimC_beta prefoldin, 75.0 7.2 0.00016 33.3 5.5 35 64-98 73-107 (110)
99 KOG4571 Activating transcripti 74.6 5 0.00011 40.2 4.9 36 68-103 251-286 (294)
100 PF05377 FlaC_arch: Flagella a 74.4 9.4 0.0002 29.0 5.2 32 64-95 6-37 (55)
101 PF11336 DUF3138: Protein of u 74.1 4.4 9.5E-05 42.7 4.5 29 72-100 25-53 (514)
102 PRK06568 F0F1 ATP synthase sub 73.9 26 0.00056 32.0 9.1 43 64-106 34-76 (154)
103 PF05103 DivIVA: DivIVA protei 73.5 1.6 3.4E-05 37.9 1.1 46 64-109 24-69 (131)
104 TIGR02894 DNA_bind_RsfA transc 73.4 13 0.00028 34.3 6.9 42 75-116 100-141 (161)
105 TIGR00064 ftsY signal recognit 73.3 66 0.0014 31.9 12.6 69 167-248 87-162 (272)
106 PRK09343 prefoldin subunit bet 73.0 9.6 0.00021 33.3 5.8 38 64-101 77-114 (121)
107 PRK11677 hypothetical protein; 73.0 10 0.00023 33.9 6.1 17 18-34 4-20 (134)
108 PF14584 DUF4446: Protein of u 72.8 19 0.00041 32.8 7.9 42 59-100 39-81 (151)
109 PF10805 DUF2730: Protein of u 72.4 24 0.00052 30.0 8.0 17 18-34 12-28 (106)
110 cd00632 Prefoldin_beta Prefold 72.1 9.6 0.00021 32.2 5.5 35 64-98 69-103 (105)
111 PRK11239 hypothetical protein; 71.8 7.4 0.00016 37.4 5.2 33 63-95 181-213 (215)
112 TIGR03752 conj_TIGR03752 integ 71.8 22 0.00048 38.1 9.2 29 65-93 66-94 (472)
113 PF07407 Seadorna_VP6: Seadorn 71.6 4.7 0.0001 41.0 3.9 34 61-94 28-61 (420)
114 PRK09039 hypothetical protein; 71.4 10 0.00023 38.9 6.6 43 74-116 139-181 (343)
115 PRK13455 F0F1 ATP synthase sub 71.1 28 0.0006 32.3 8.9 66 11-100 25-93 (184)
116 PRK14127 cell division protein 71.0 7.5 0.00016 33.6 4.6 38 63-100 24-65 (109)
117 PRK02793 phi X174 lysis protei 71.0 35 0.00076 27.1 8.1 53 61-113 4-56 (72)
118 COG1422 Predicted membrane pro 70.8 27 0.00057 33.4 8.5 24 64-87 71-94 (201)
119 TIGR03752 conj_TIGR03752 integ 70.8 11 0.00025 40.2 6.8 33 63-95 71-103 (472)
120 PF11932 DUF3450: Protein of u 70.6 15 0.00032 35.9 7.2 43 64-106 55-97 (251)
121 PRK02119 hypothetical protein; 70.6 23 0.0005 28.2 7.0 41 60-100 4-44 (73)
122 PRK12653 fructose-6-phosphate 70.5 19 0.00041 34.8 7.7 82 121-204 19-106 (220)
123 PF04111 APG6: Autophagy prote 70.5 13 0.00029 37.7 7.0 54 62-115 40-93 (314)
124 PF05957 DUF883: Bacterial pro 70.4 3.4 7.3E-05 34.2 2.3 16 16-31 77-92 (94)
125 KOG4797 Transcriptional regula 69.8 7.2 0.00016 33.6 4.1 36 69-104 56-92 (123)
126 PF04999 FtsL: Cell division p 69.8 14 0.0003 30.6 5.9 30 65-94 42-71 (97)
127 TIGR01843 type_I_hlyD type I s 69.4 13 0.00029 38.1 6.9 56 66-121 138-193 (423)
128 KOG1003 Actin filament-coating 69.4 13 0.00029 35.3 6.2 52 65-116 116-174 (205)
129 PF02403 Seryl_tRNA_N: Seryl-t 69.3 16 0.00035 30.7 6.3 34 65-98 29-62 (108)
130 PRK00736 hypothetical protein; 68.8 39 0.00084 26.6 7.8 36 64-99 4-39 (68)
131 PF06005 DUF904: Protein of un 68.6 24 0.00053 28.1 6.7 38 65-102 11-48 (72)
132 PRK14472 F0F1 ATP synthase sub 68.5 45 0.00097 30.6 9.6 63 16-100 22-84 (175)
133 PLN02659 Probable galacturonos 68.5 17 0.00038 39.4 7.7 175 219-415 323-524 (534)
134 PF08317 Spc7: Spc7 kinetochor 68.5 16 0.00035 37.1 7.2 51 65-115 216-266 (325)
135 PRK00295 hypothetical protein; 68.3 41 0.0009 26.4 7.9 50 64-113 4-53 (68)
136 KOG2751 Beclin-like protein [S 68.1 1.6E+02 0.0034 31.5 14.2 102 117-238 279-383 (447)
137 KOG4343 bZIP transcription fac 67.8 6.6 0.00014 42.4 4.3 63 65-127 309-382 (655)
138 COG3074 Uncharacterized protei 67.7 31 0.00067 27.5 6.9 51 63-113 2-52 (79)
139 PF05546 She9_MDM33: She9 / Md 67.6 19 0.00041 34.5 6.9 51 64-114 31-81 (207)
140 PF11336 DUF3138: Protein of u 67.5 21 0.00044 37.9 7.6 59 63-121 23-111 (514)
141 PF04102 SlyX: SlyX; InterPro 67.3 25 0.00053 27.6 6.5 48 64-111 3-50 (69)
142 PF00170 bZIP_1: bZIP transcri 67.3 15 0.00032 28.1 5.2 30 65-94 33-62 (64)
143 KOG4253 Tryptophan-rich basic 67.2 26 0.00056 32.2 7.3 32 64-95 50-86 (175)
144 PF04899 MbeD_MobD: MbeD/MobD 67.1 15 0.00033 29.2 5.2 33 66-98 29-61 (70)
145 PF02183 HALZ: Homeobox associ 66.8 17 0.00036 26.4 4.9 31 68-98 8-38 (45)
146 PHA00728 hypothetical protein 66.6 7 0.00015 34.3 3.5 26 71-96 4-29 (151)
147 PF09304 Cortex-I_coil: Cortex 66.5 26 0.00057 30.1 6.9 44 65-108 16-59 (107)
148 PF10779 XhlA: Haemolysin XhlA 66.0 20 0.00043 28.2 5.7 48 68-115 2-49 (71)
149 PRK09173 F0F1 ATP synthase sub 65.9 33 0.00071 30.9 8.0 37 64-100 32-68 (159)
150 PRK13461 F0F1 ATP synthase sub 65.8 66 0.0014 29.0 10.0 64 16-101 9-72 (159)
151 PF04102 SlyX: SlyX; InterPro 65.6 32 0.00069 27.0 6.8 50 69-118 1-50 (69)
152 PRK01362 putative translaldola 65.5 22 0.00048 34.2 7.1 83 118-204 16-104 (214)
153 PF11382 DUF3186: Protein of u 65.3 27 0.00058 35.4 8.0 50 72-121 32-81 (308)
154 PF07989 Microtub_assoc: Micro 65.1 15 0.00033 29.5 5.0 36 65-100 36-71 (75)
155 PF03672 UPF0154: Uncharacteri 65.0 6 0.00013 31.0 2.5 19 16-34 3-21 (64)
156 PF15456 Uds1: Up-regulated Du 64.8 17 0.00036 32.1 5.6 35 62-97 19-53 (124)
157 COG0711 AtpF F0F1-type ATP syn 64.7 62 0.0013 29.5 9.6 21 15-35 9-29 (161)
158 COG1792 MreC Cell shape-determ 64.6 40 0.00086 33.8 9.0 50 63-112 54-106 (284)
159 TIGR00158 L9 ribosomal protein 64.5 15 0.00034 33.2 5.5 33 64-96 41-73 (148)
160 PF13704 Glyco_tranf_2_4: Glyc 64.4 73 0.0016 25.5 9.3 80 167-256 5-88 (97)
161 PF11559 ADIP: Afadin- and alp 64.3 24 0.00051 31.6 6.7 48 65-112 59-106 (151)
162 KOG2391 Vacuolar sorting prote 64.3 18 0.0004 37.1 6.5 84 64-153 224-312 (365)
163 COG1729 Uncharacterized protei 64.3 28 0.00062 34.6 7.7 50 66-116 57-106 (262)
164 COG3937 Uncharacterized conser 64.2 7.6 0.00017 33.3 3.2 34 63-96 66-107 (108)
165 PF12718 Tropomyosin_1: Tropom 64.0 27 0.00059 31.4 7.0 44 65-108 28-71 (143)
166 PLN02870 Probable galacturonos 63.4 19 0.00041 39.2 6.7 168 225-415 329-523 (533)
167 CHL00160 rpl9 ribosomal protei 63.2 18 0.0004 33.0 5.8 34 64-97 46-79 (153)
168 PF00430 ATP-synt_B: ATP synth 62.7 38 0.00083 29.0 7.6 18 17-34 4-21 (132)
169 PRK03947 prefoldin subunit alp 62.6 17 0.00037 32.1 5.4 43 64-106 93-135 (140)
170 PF12329 TMF_DNA_bd: TATA elem 62.6 24 0.00052 28.2 5.7 35 65-99 12-46 (74)
171 TIGR00293 prefoldin, archaeal 62.5 14 0.0003 31.9 4.7 31 66-96 94-124 (126)
172 TIGR00875 fsa_talC_mipB fructo 62.5 25 0.00055 33.7 6.9 83 118-204 16-104 (213)
173 smart00338 BRLZ basic region l 62.4 19 0.00041 27.6 4.9 33 72-104 26-58 (65)
174 PF04420 CHD5: CHD5-like prote 62.3 8.7 0.00019 35.2 3.5 46 61-106 36-93 (161)
175 PRK12655 fructose-6-phosphate 62.0 33 0.00072 33.1 7.6 82 121-204 19-106 (220)
176 PRK10920 putative uroporphyrin 61.9 43 0.00093 35.2 9.0 52 66-117 68-123 (390)
177 PF01166 TSC22: TSC-22/dip/bun 61.8 15 0.00032 28.3 4.0 28 65-92 14-41 (59)
178 PRK12656 fructose-6-phosphate 61.6 23 0.0005 34.3 6.5 82 121-204 19-108 (222)
179 PRK13453 F0F1 ATP synthase sub 61.5 62 0.0013 29.8 9.1 66 16-103 22-87 (173)
180 TIGR00290 MJ0570_dom MJ0570-re 61.4 61 0.0013 31.4 9.3 82 153-250 58-144 (223)
181 PF05812 Herpes_BLRF2: Herpesv 61.3 12 0.00026 32.8 4.0 24 67-90 5-28 (118)
182 PRK05759 F0F1 ATP synthase sub 61.3 80 0.0017 28.1 9.6 67 15-103 7-73 (156)
183 PF12097 DUF3573: Protein of u 61.3 16 0.00035 37.5 5.4 41 78-118 41-82 (383)
184 PRK14160 heat shock protein Gr 61.2 29 0.00063 33.4 7.0 44 66-109 55-98 (211)
185 PRK10476 multidrug resistance 61.1 63 0.0014 32.7 9.9 56 66-121 87-149 (346)
186 PRK09039 hypothetical protein; 60.8 32 0.0007 35.4 7.7 46 65-110 53-105 (343)
187 PHA03162 hypothetical protein; 60.8 11 0.00024 33.5 3.7 24 67-90 15-38 (135)
188 KOG0971 Microtubule-associated 60.8 6.4 0.00014 44.9 2.8 29 78-106 223-251 (1243)
189 PF01920 Prefoldin_2: Prefoldi 60.7 21 0.00045 29.4 5.3 31 65-95 69-99 (106)
190 PRK09413 IS2 repressor TnpA; R 60.4 15 0.00032 31.8 4.5 29 72-100 71-99 (121)
191 PF10828 DUF2570: Protein of u 60.4 84 0.0018 26.8 9.1 8 25-32 12-19 (110)
192 PF13974 YebO: YebO-like prote 60.3 17 0.00037 29.7 4.4 15 20-34 4-18 (80)
193 PF02388 FemAB: FemAB family; 60.2 30 0.00066 36.2 7.6 55 61-115 238-302 (406)
194 PF06637 PV-1: PV-1 protein (P 60.1 36 0.00077 35.6 7.7 48 65-112 58-105 (442)
195 CHL00118 atpG ATP synthase CF0 59.7 45 0.00098 30.1 7.7 70 12-103 22-91 (156)
196 PRK13454 F0F1 ATP synthase sub 59.6 68 0.0015 29.8 9.1 40 64-103 61-100 (181)
197 PF12325 TMF_TATA_bd: TATA ele 59.6 34 0.00073 30.0 6.5 28 64-91 15-42 (120)
198 PF08496 Peptidase_S49_N: Pept 59.5 1.1E+02 0.0023 28.1 10.1 91 64-164 48-142 (155)
199 COG1730 GIM5 Predicted prefold 59.5 29 0.00063 31.5 6.3 42 65-106 101-142 (145)
200 PF09730 BicD: Microtubule-ass 59.4 18 0.0004 40.7 6.0 53 65-117 265-317 (717)
201 PF12732 YtxH: YtxH-like prote 59.2 41 0.0009 26.4 6.5 18 16-33 5-22 (74)
202 PF09726 Macoilin: Transmembra 59.2 17 0.00036 41.0 5.7 33 60-94 450-482 (697)
203 PF07889 DUF1664: Protein of u 58.9 38 0.00083 30.0 6.8 27 14-41 7-37 (126)
204 PF12329 TMF_DNA_bd: TATA elem 58.7 43 0.00094 26.7 6.5 38 70-107 31-68 (74)
205 PRK06975 bifunctional uroporph 58.6 23 0.0005 39.6 6.7 35 83-117 375-409 (656)
206 cd02515 Glyco_transf_6 Glycosy 58.5 90 0.002 31.2 10.0 108 136-255 17-139 (271)
207 PF07334 IFP_35_N: Interferon- 58.3 17 0.00038 29.4 4.1 26 74-99 2-27 (76)
208 cd00956 Transaldolase_FSA Tran 58.3 35 0.00075 32.6 7.0 84 118-204 15-104 (211)
209 TIGR02134 transald_staph trans 58.2 36 0.00079 33.3 7.2 82 120-204 23-115 (236)
210 TIGR03789 pdsO proteobacterial 58.0 1.9E+02 0.0042 28.3 12.7 37 155-203 169-205 (239)
211 PF13807 GNVR: G-rich domain o 58.0 9.2 0.0002 30.7 2.6 22 12-33 58-79 (82)
212 smart00787 Spc7 Spc7 kinetocho 57.9 34 0.00074 34.8 7.2 55 59-114 199-260 (312)
213 cd00890 Prefoldin Prefoldin is 57.9 23 0.0005 30.3 5.3 33 65-97 94-126 (129)
214 PF09304 Cortex-I_coil: Cortex 57.9 32 0.00069 29.6 5.9 35 70-104 42-76 (107)
215 PRK14471 F0F1 ATP synthase sub 57.9 81 0.0018 28.5 9.1 38 64-101 38-75 (164)
216 PF14389 Lzipper-MIP1: Leucine 57.8 25 0.00055 29.0 5.2 38 59-96 48-85 (88)
217 PRK08475 F0F1 ATP synthase sub 57.3 82 0.0018 28.9 9.1 65 15-101 25-89 (167)
218 PRK14473 F0F1 ATP synthase sub 57.2 99 0.0021 28.0 9.6 62 18-101 14-75 (164)
219 COG4238 Murein lipoprotein [Ce 57.2 62 0.0013 26.1 7.0 48 59-106 19-66 (78)
220 PRK13729 conjugal transfer pil 57.1 15 0.00032 39.5 4.5 44 75-118 79-122 (475)
221 PF04728 LPP: Lipoprotein leuc 57.0 44 0.00095 25.5 5.8 40 64-103 9-48 (56)
222 PF12999 PRKCSH-like: Glucosid 56.4 26 0.00056 32.8 5.6 53 65-117 117-170 (176)
223 PHA03155 hypothetical protein; 56.3 14 0.00031 32.1 3.5 24 67-90 10-33 (115)
224 PRK13460 F0F1 ATP synthase sub 56.2 1E+02 0.0022 28.3 9.5 62 18-101 22-83 (173)
225 PF05529 Bap31: B-cell recepto 56.1 31 0.00068 32.1 6.2 32 64-95 117-148 (192)
226 PRK04325 hypothetical protein; 56.0 94 0.002 24.8 8.0 35 64-98 8-42 (74)
227 PF08172 CASP_C: CASP C termin 55.9 24 0.00052 34.8 5.6 41 67-107 81-121 (248)
228 cd05017 SIS_PGI_PMI_1 The memb 55.9 58 0.0013 27.6 7.4 59 151-210 41-99 (119)
229 KOG0994 Extracellular matrix g 55.6 28 0.00061 41.1 6.7 50 60-109 1537-1586(1758)
230 PRK14127 cell division protein 55.6 27 0.00058 30.2 5.1 29 68-96 40-68 (109)
231 PRK04406 hypothetical protein; 55.5 89 0.0019 25.1 7.8 32 64-95 10-41 (75)
232 PRK09174 F0F1 ATP synthase sub 55.5 99 0.0021 29.5 9.5 64 15-100 56-119 (204)
233 PF01034 Syndecan: Syndecan do 55.3 3.9 8.5E-05 31.9 0.0 24 11-34 5-28 (64)
234 PF13600 DUF4140: N-terminal d 55.3 28 0.00061 29.0 5.3 36 62-97 67-102 (104)
235 PF05600 DUF773: Protein of un 55.1 35 0.00076 37.1 7.2 92 21-118 408-500 (507)
236 KOG2264 Exostosin EXT1L [Signa 55.1 23 0.00051 38.7 5.6 48 71-118 92-139 (907)
237 PRK14475 F0F1 ATP synthase sub 54.8 60 0.0013 29.6 7.7 39 64-102 40-78 (167)
238 cd08555 PI-PLCc_GDPD_SF Cataly 54.7 1.1E+02 0.0024 27.8 9.6 90 140-247 59-178 (179)
239 PF08537 NBP1: Fungal Nap bind 54.6 30 0.00065 35.3 6.1 41 60-100 170-210 (323)
240 PRK15422 septal ring assembly 54.5 63 0.0014 26.4 6.7 40 65-104 4-43 (79)
241 PRK14161 heat shock protein Gr 54.5 37 0.00081 31.8 6.3 43 66-108 13-55 (178)
242 PRK09973 putative outer membra 54.4 73 0.0016 26.4 7.2 41 64-104 30-70 (85)
243 PHA02562 46 endonuclease subun 54.2 1.4E+02 0.003 32.1 11.7 18 185-202 444-461 (562)
244 PF07794 DUF1633: Protein of u 54.2 22 0.00048 38.2 5.2 40 71-110 617-656 (790)
245 PF04340 DUF484: Protein of un 54.1 46 0.001 31.8 7.2 41 66-106 41-81 (225)
246 cd04776 HTH_GnyR Helix-Turn-He 54.1 33 0.00072 29.6 5.6 35 65-99 80-114 (118)
247 PF11460 DUF3007: Protein of u 53.7 59 0.0013 27.9 6.8 58 15-94 36-93 (104)
248 cd01109 HTH_YyaN Helix-Turn-He 53.7 32 0.00069 29.2 5.4 34 64-97 78-111 (113)
249 KOG1962 B-cell receptor-associ 53.5 27 0.00058 33.7 5.3 30 80-109 159-188 (216)
250 COG4942 Membrane-bound metallo 53.4 39 0.00085 35.8 6.9 49 62-110 56-104 (420)
251 PF06103 DUF948: Bacterial pro 53.4 85 0.0018 25.4 7.7 32 65-96 26-57 (90)
252 PHA03385 IX capsid protein IX, 53.2 58 0.0013 28.8 6.8 35 60-94 95-129 (135)
253 TIGR00289 conserved hypothetic 53.2 1.1E+02 0.0025 29.5 9.6 81 153-250 58-143 (222)
254 PTZ00454 26S protease regulato 53.1 49 0.0011 34.7 7.7 54 60-113 10-63 (398)
255 cd04769 HTH_MerR2 Helix-Turn-H 53.1 34 0.00074 29.2 5.5 38 64-101 78-115 (116)
256 COG3883 Uncharacterized protei 53.0 62 0.0013 32.3 7.9 53 65-117 38-90 (265)
257 COG3763 Uncharacterized protei 52.9 13 0.00027 29.7 2.4 16 59-74 36-51 (71)
258 PF04380 BMFP: Membrane fusoge 52.7 25 0.00054 28.4 4.3 33 62-94 47-79 (79)
259 PRK03992 proteasome-activating 52.5 36 0.00078 35.4 6.6 48 66-113 2-49 (389)
260 PF07558 Shugoshin_N: Shugoshi 52.4 16 0.00035 26.5 2.8 26 64-89 20-45 (46)
261 PF00261 Tropomyosin: Tropomyo 52.4 48 0.001 32.1 7.0 41 76-116 166-206 (237)
262 TIGR01005 eps_transp_fam exopo 52.2 63 0.0014 36.5 8.9 22 232-256 567-588 (754)
263 COG1566 EmrA Multidrug resista 52.1 95 0.0021 32.2 9.4 55 66-120 92-147 (352)
264 PRK04325 hypothetical protein; 52.0 55 0.0012 26.1 6.1 49 68-116 5-53 (74)
265 COG0359 RplI Ribosomal protein 51.9 37 0.00079 31.0 5.6 34 64-97 41-74 (148)
266 KOG3705 Glycoprotein 6-alpha-L 51.8 64 0.0014 34.1 8.0 69 60-132 39-111 (580)
267 PF12072 DUF3552: Domain of un 51.8 42 0.00092 31.7 6.4 19 16-34 2-20 (201)
268 PF09789 DUF2353: Uncharacteri 51.7 16 0.00035 37.2 3.7 38 61-98 75-112 (319)
269 PRK15362 pathogenicity island 51.7 26 0.00057 37.2 5.3 53 62-124 102-155 (473)
270 COG4026 Uncharacterized protei 51.6 48 0.001 32.3 6.6 64 65-129 135-198 (290)
271 PRK12376 putative translaldola 51.5 47 0.001 32.5 6.8 82 120-204 23-115 (236)
272 KOG3119 Basic region leucine z 51.4 28 0.0006 34.6 5.3 37 68-104 218-254 (269)
273 TIGR03321 alt_F1F0_F0_B altern 51.4 1E+02 0.0022 30.0 9.1 61 18-100 11-71 (246)
274 COG0263 ProB Glutamate 5-kinas 51.3 1.3E+02 0.0028 31.4 10.0 110 142-258 29-183 (369)
275 PRK15396 murein lipoprotein; P 51.2 95 0.0021 25.2 7.4 41 64-104 31-71 (78)
276 PRK13182 racA polar chromosome 51.2 45 0.00099 31.1 6.3 58 60-117 80-142 (175)
277 PF06632 XRCC4: DNA double-str 51.1 53 0.0011 33.9 7.4 45 64-108 136-180 (342)
278 cd00584 Prefoldin_alpha Prefol 51.1 35 0.00076 29.5 5.3 37 63-99 85-121 (129)
279 COG1609 PurR Transcriptional r 50.8 2.2E+02 0.0048 28.7 11.9 96 141-242 71-176 (333)
280 PF02996 Prefoldin: Prefoldin 50.8 34 0.00073 29.0 5.1 42 64-105 76-117 (120)
281 PF08838 DUF1811: Protein of u 50.8 17 0.00037 31.0 3.1 25 82-106 10-34 (102)
282 PRK01844 hypothetical protein; 50.8 14 0.0003 29.6 2.4 18 17-34 11-28 (72)
283 PRK04654 sec-independent trans 50.6 51 0.0011 31.8 6.6 49 68-117 44-92 (214)
284 PF11853 DUF3373: Protein of u 50.4 11 0.00024 40.6 2.4 31 64-94 30-60 (489)
285 PRK00846 hypothetical protein; 50.2 1.2E+02 0.0027 24.5 7.9 33 64-96 12-44 (77)
286 COG4026 Uncharacterized protei 49.9 55 0.0012 31.9 6.7 39 71-109 134-172 (290)
287 PF07989 Microtub_assoc: Micro 49.7 49 0.0011 26.6 5.5 41 68-108 3-44 (75)
288 PF13094 CENP-Q: CENP-Q, a CEN 49.7 1.1E+02 0.0024 27.5 8.6 40 65-104 41-80 (160)
289 PRK03947 prefoldin subunit alp 49.7 62 0.0013 28.5 6.8 37 65-101 101-137 (140)
290 COG1340 Uncharacterized archae 49.6 59 0.0013 32.9 7.2 43 66-108 28-70 (294)
291 smart00787 Spc7 Spc7 kinetocho 49.5 52 0.0011 33.5 7.0 54 64-117 178-242 (312)
292 PF10046 BLOC1_2: Biogenesis o 49.3 75 0.0016 26.6 6.9 49 68-116 45-96 (99)
293 PRK14474 F0F1 ATP synthase sub 49.3 1.1E+02 0.0024 30.0 9.1 63 17-101 10-72 (250)
294 PF07407 Seadorna_VP6: Seadorn 49.0 51 0.0011 33.8 6.6 29 72-100 32-60 (420)
295 COG2825 HlpA Outer membrane pr 49.0 73 0.0016 29.5 7.3 30 68-97 47-76 (170)
296 PF11559 ADIP: Afadin- and alp 49.0 59 0.0013 29.0 6.6 48 68-115 55-102 (151)
297 KOG0981 DNA topoisomerase I [R 48.8 31 0.00066 37.9 5.3 48 70-117 634-693 (759)
298 PRK02119 hypothetical protein; 48.7 73 0.0016 25.4 6.3 50 68-117 5-54 (73)
299 PLN03230 acetyl-coenzyme A car 48.6 2.8E+02 0.006 29.7 12.2 16 194-209 214-229 (431)
300 PF01166 TSC22: TSC-22/dip/bun 48.6 15 0.00033 28.2 2.2 26 77-102 12-37 (59)
301 PF06946 Phage_holin_5: Phage 48.5 16 0.00034 30.7 2.5 18 17-34 38-55 (93)
302 PF10186 Atg14: UV radiation r 48.4 55 0.0012 31.9 6.9 31 65-95 70-100 (302)
303 PF08826 DMPK_coil: DMPK coile 48.1 51 0.0011 25.5 5.1 31 69-99 29-59 (61)
304 PRK07353 F0F1 ATP synthase sub 48.1 1E+02 0.0022 26.9 7.9 40 64-103 35-74 (140)
305 PF12097 DUF3573: Protein of u 47.7 30 0.00065 35.6 4.9 25 63-87 40-64 (383)
306 PRK14148 heat shock protein Gr 47.7 42 0.00092 31.9 5.6 44 65-108 33-76 (195)
307 PF06810 Phage_GP20: Phage min 47.6 55 0.0012 29.9 6.2 20 80-99 52-71 (155)
308 TIGR02977 phageshock_pspA phag 47.2 79 0.0017 30.2 7.6 40 64-103 98-137 (219)
309 COG1579 Zn-ribbon protein, pos 47.2 67 0.0015 31.5 7.1 42 65-106 103-144 (239)
310 PF06810 Phage_GP20: Phage min 47.2 61 0.0013 29.6 6.4 8 186-193 118-125 (155)
311 PF06936 Selenoprotein_S: Sele 47.1 40 0.00087 31.9 5.4 41 59-99 70-111 (190)
312 KOG4403 Cell surface glycoprot 47.0 78 0.0017 33.7 7.8 23 11-34 214-236 (575)
313 TIGR03185 DNA_S_dndD DNA sulfu 46.9 60 0.0013 36.2 7.6 47 65-111 421-467 (650)
314 PF02996 Prefoldin: Prefoldin 46.8 44 0.00096 28.3 5.2 36 64-99 83-118 (120)
315 PF13870 DUF4201: Domain of un 46.8 77 0.0017 29.1 7.2 62 64-134 83-144 (177)
316 TIGR03495 phage_LysB phage lys 46.7 1.4E+02 0.003 26.8 8.4 72 65-136 40-118 (135)
317 PRK05771 V-type ATP synthase s 46.6 84 0.0018 34.9 8.7 39 62-100 212-250 (646)
318 PF04899 MbeD_MobD: MbeD/MobD 46.6 36 0.00078 27.1 4.2 26 72-97 42-67 (70)
319 PF11221 Med21: Subunit 21 of 46.5 49 0.0011 29.6 5.7 44 65-108 69-126 (144)
320 PRK14153 heat shock protein Gr 46.4 56 0.0012 31.1 6.2 50 59-108 18-69 (194)
321 KOG1853 LIS1-interacting prote 46.2 42 0.00091 33.2 5.4 38 64-101 146-186 (333)
322 TIGR00524 eIF-2B_rel eIF-2B al 46.2 2.6E+02 0.0056 28.3 11.4 55 153-208 118-185 (303)
323 PRK04406 hypothetical protein; 46.1 86 0.0019 25.2 6.4 49 68-116 7-55 (75)
324 COG4345 Uncharacterized protei 46.1 61 0.0013 30.1 6.1 53 69-121 122-174 (181)
325 PF08606 Prp19: Prp19/Pso4-lik 45.9 1.1E+02 0.0024 24.4 6.8 48 64-111 7-54 (70)
326 COG1735 Php Predicted metal-de 45.9 62 0.0013 33.0 6.7 142 89-260 113-269 (316)
327 PRK12704 phosphodiesterase; Pr 45.7 53 0.0012 35.8 6.8 90 16-111 6-100 (520)
328 CHL00019 atpF ATP synthase CF0 45.5 1.6E+02 0.0035 27.2 9.1 41 64-104 54-94 (184)
329 PF06160 EzrA: Septation ring 45.5 49 0.0011 36.3 6.5 19 16-34 1-19 (560)
330 KOG4001 Axonemal dynein light 45.4 49 0.0011 31.8 5.5 38 66-103 186-223 (259)
331 TIGR02047 CadR-PbrR Cd(II)/Pb( 45.4 49 0.0011 28.8 5.4 34 64-97 78-111 (127)
332 PF10376 Mei5: Double-strand r 45.3 82 0.0018 30.5 7.3 27 73-99 132-158 (221)
333 PF12709 Kinetocho_Slk19: Cent 45.3 60 0.0013 27.0 5.4 25 65-89 49-73 (87)
334 PF11544 Spc42p: Spindle pole 45.3 1.4E+02 0.0031 24.2 7.4 44 65-108 5-48 (76)
335 PRK06569 F0F1 ATP synthase sub 45.0 2.1E+02 0.0046 26.2 9.5 45 64-108 40-84 (155)
336 PF12808 Mto2_bdg: Micro-tubul 44.9 36 0.00077 25.6 3.7 23 71-93 28-50 (52)
337 PF14645 Chibby: Chibby family 44.9 95 0.0021 27.0 7.0 38 61-98 67-104 (116)
338 PF10234 Cluap1: Clusterin-ass 44.9 79 0.0017 31.6 7.2 49 65-113 169-217 (267)
339 PF01920 Prefoldin_2: Prefoldi 44.7 58 0.0012 26.7 5.5 36 64-99 61-96 (106)
340 PRK06231 F0F1 ATP synthase sub 44.7 1.6E+02 0.0034 28.0 9.1 38 64-101 78-115 (205)
341 COG1382 GimC Prefoldin, chaper 44.7 56 0.0012 28.7 5.5 36 64-99 76-111 (119)
342 PF11471 Sugarporin_N: Maltopo 44.6 48 0.001 25.5 4.5 25 76-100 29-53 (60)
343 PF07905 PucR: Purine cataboli 44.5 93 0.002 26.8 6.9 60 151-210 40-108 (123)
344 PRK00523 hypothetical protein; 44.2 21 0.00046 28.6 2.5 18 17-34 12-29 (72)
345 KOG3883 Ras family small GTPas 44.2 8.5 0.00018 35.6 0.3 32 31-76 81-112 (198)
346 PF10779 XhlA: Haemolysin XhlA 44.2 47 0.001 26.1 4.6 30 67-96 15-44 (71)
347 PF10212 TTKRSYEDQ: Predicted 44.1 60 0.0013 35.3 6.7 50 65-114 420-469 (518)
348 PF07888 CALCOCO1: Calcium bin 44.1 58 0.0013 35.7 6.6 12 23-34 99-110 (546)
349 PF02403 Seryl_tRNA_N: Seryl-t 44.0 46 0.001 27.9 4.8 48 67-114 52-102 (108)
350 KOG4603 TBP-1 interacting prot 43.8 37 0.00081 31.7 4.4 30 62-91 76-105 (201)
351 PRK10227 DNA-binding transcrip 43.7 55 0.0012 29.0 5.5 34 63-96 77-110 (135)
352 PRK13428 F0F1 ATP synthase sub 43.4 1.3E+02 0.0028 32.1 9.2 19 17-35 6-24 (445)
353 COG4467 Regulator of replicati 43.4 38 0.00081 29.3 4.1 30 68-97 25-54 (114)
354 PF00038 Filament: Intermediat 43.4 80 0.0017 31.4 7.2 30 67-96 225-254 (312)
355 PF11461 RILP: Rab interacting 43.2 38 0.00082 26.2 3.7 32 72-103 3-34 (60)
356 PF01008 IF-2B: Initiation fac 43.2 2.7E+02 0.0058 27.2 10.9 50 153-206 107-163 (282)
357 PF09457 RBD-FIP: FIP domain ; 43.1 53 0.0012 24.2 4.3 28 69-96 4-31 (48)
358 KOG4196 bZIP transcription fac 43.0 56 0.0012 29.1 5.2 30 75-104 77-106 (135)
359 CHL00198 accA acetyl-CoA carbo 42.6 2.7E+02 0.0058 28.6 10.8 17 193-209 146-162 (322)
360 PF07321 YscO: Type III secret 42.6 92 0.002 28.5 6.8 48 62-109 64-111 (152)
361 TIGR01242 26Sp45 26S proteasom 42.3 47 0.001 34.0 5.5 35 65-99 6-40 (364)
362 PF04849 HAP1_N: HAP1 N-termin 42.3 51 0.0011 33.5 5.5 33 67-99 162-194 (306)
363 PRK14011 prefoldin subunit alp 42.1 83 0.0018 28.5 6.4 34 65-98 95-128 (144)
364 PF03962 Mnd1: Mnd1 family; I 42.1 1E+02 0.0022 29.0 7.2 29 64-92 68-96 (188)
365 PF10884 DUF2683: Protein of u 42.0 26 0.00057 28.5 2.8 53 76-129 24-76 (80)
366 PF08172 CASP_C: CASP C termin 42.0 69 0.0015 31.5 6.3 37 65-101 93-130 (248)
367 TIGR02231 conserved hypothetic 41.9 69 0.0015 34.6 6.9 48 67-114 126-173 (525)
368 PF10186 Atg14: UV radiation r 41.8 86 0.0019 30.5 7.1 48 64-111 55-102 (302)
369 KOG2577 Transcription factor E 41.7 54 0.0012 34.0 5.7 43 62-104 141-183 (354)
370 PRK00295 hypothetical protein; 41.7 94 0.002 24.4 5.9 47 71-117 4-50 (68)
371 PF01763 Herpes_UL6: Herpesvir 41.7 52 0.0011 36.2 5.8 36 66-101 371-406 (557)
372 TIGR02044 CueR Cu(I)-responsiv 41.7 67 0.0014 27.9 5.6 34 63-96 77-110 (127)
373 PF08614 ATG16: Autophagy prot 41.6 1.1E+02 0.0023 28.7 7.4 22 75-96 119-140 (194)
374 PF12325 TMF_TATA_bd: TATA ele 41.6 1.3E+02 0.0029 26.3 7.4 50 66-115 31-83 (120)
375 PRK05892 nucleoside diphosphat 41.6 44 0.00094 30.6 4.6 47 61-107 7-53 (158)
376 PRK09510 tolA cell envelope in 41.5 1.1E+02 0.0024 32.2 8.1 12 330-341 365-376 (387)
377 PF08614 ATG16: Autophagy prot 41.4 85 0.0018 29.4 6.7 35 65-99 74-108 (194)
378 PF08946 Osmo_CC: Osmosensory 41.2 47 0.001 24.3 3.7 27 69-95 9-35 (46)
379 PF03980 Nnf1: Nnf1 ; InterPr 41.1 42 0.00092 28.3 4.2 26 67-92 82-107 (109)
380 PRK06975 bifunctional uroporph 40.8 94 0.002 34.9 7.9 35 65-99 378-412 (656)
381 COG2433 Uncharacterized conser 40.8 50 0.0011 36.5 5.5 35 65-99 422-456 (652)
382 cd00225 API3 Ascaris pepsin in 40.8 11 0.00024 34.2 0.6 64 23-105 9-74 (159)
383 PF05837 CENP-H: Centromere pr 40.7 85 0.0018 26.7 5.9 33 64-96 16-48 (106)
384 PF05278 PEARLI-4: Arabidopsis 40.6 85 0.0018 31.4 6.7 27 74-100 216-242 (269)
385 PF04012 PspA_IM30: PspA/IM30 40.6 85 0.0018 29.7 6.7 46 64-109 97-142 (221)
386 cd08579 GDPD_memb_like Glycero 40.6 1.3E+02 0.0029 28.1 8.0 60 141-200 83-146 (220)
387 PF08738 Gon7: Gon7 family; I 40.5 76 0.0016 27.2 5.5 38 60-101 46-84 (103)
388 PF01902 ATP_bind_4: ATP-bindi 40.5 80 0.0017 30.4 6.4 85 153-253 58-147 (218)
389 TIGR00512 salvage_mtnA S-methy 40.3 3.2E+02 0.0068 28.2 11.0 53 156-208 149-213 (331)
390 cd01282 HTH_MerR-like_sg3 Heli 40.2 73 0.0016 27.1 5.5 33 63-95 79-111 (112)
391 PRK14158 heat shock protein Gr 40.2 50 0.0011 31.4 4.9 37 70-106 38-74 (194)
392 COG1196 Smc Chromosome segrega 40.1 1.8E+02 0.0039 34.8 10.6 12 117-128 514-525 (1163)
393 PF00532 Peripla_BP_1: Peripla 40.0 2.2E+02 0.0047 27.8 9.6 113 133-258 7-130 (279)
394 PTZ00464 SNF-7-like protein; P 39.8 1E+02 0.0022 29.7 6.9 30 65-94 18-47 (211)
395 PRK05431 seryl-tRNA synthetase 39.5 88 0.0019 33.1 7.1 34 64-97 27-60 (425)
396 PF13815 Dzip-like_N: Iguana/D 39.4 84 0.0018 27.1 5.8 13 22-34 29-41 (118)
397 PRK00846 hypothetical protein; 39.4 1.3E+02 0.0029 24.4 6.5 54 65-118 6-59 (77)
398 PRK09514 zntR zinc-responsive 39.3 76 0.0016 28.2 5.7 36 64-99 80-115 (140)
399 PRK00736 hypothetical protein; 39.3 1.1E+02 0.0023 24.1 5.9 26 70-95 24-49 (68)
400 PF04822 Takusan: Takusan; In 39.2 42 0.00091 27.7 3.6 28 65-92 19-46 (84)
401 PLN02678 seryl-tRNA synthetase 39.2 89 0.0019 33.5 7.1 31 65-95 33-63 (448)
402 PF07106 TBPIP: Tat binding pr 38.9 83 0.0018 28.6 6.0 50 65-114 79-130 (169)
403 PF00769 ERM: Ezrin/radixin/mo 38.8 1.1E+02 0.0024 29.9 7.2 53 64-116 81-133 (246)
404 PF09403 FadA: Adhesion protei 38.5 1.1E+02 0.0024 27.1 6.4 20 65-84 27-46 (126)
405 PF13851 GAS: Growth-arrest sp 38.4 85 0.0018 29.8 6.2 49 65-113 27-82 (201)
406 cd04766 HTH_HspR Helix-Turn-He 38.4 44 0.00096 27.2 3.8 23 74-96 67-89 (91)
407 PF11180 DUF2968: Protein of u 38.3 1E+02 0.0022 29.3 6.5 32 68-99 108-139 (192)
408 PF04791 LMBR1: LMBR1-like mem 38.2 46 0.00099 35.2 4.8 36 64-99 195-230 (471)
409 COG2919 Septum formation initi 38.2 60 0.0013 28.1 4.7 31 64-94 56-86 (117)
410 PF04888 SseC: Secretion syste 38.2 72 0.0016 31.8 6.0 42 64-108 14-55 (306)
411 PF11180 DUF2968: Protein of u 38.2 73 0.0016 30.2 5.5 56 62-117 123-185 (192)
412 PF07795 DUF1635: Protein of u 38.1 1E+02 0.0022 29.8 6.6 41 73-113 16-60 (214)
413 PF12777 MT: Microtubule-bindi 37.9 40 0.00086 34.5 4.1 48 65-112 221-268 (344)
414 TIGR02338 gimC_beta prefoldin, 37.9 79 0.0017 26.9 5.3 39 65-103 67-105 (110)
415 TIGR01144 ATP_synt_b ATP synth 37.9 2.7E+02 0.0059 24.4 9.1 37 64-100 25-61 (147)
416 TIGR03679 arCOG00187 arCOG0018 37.8 2.8E+02 0.0061 26.4 9.7 72 163-250 69-145 (218)
417 PF01025 GrpE: GrpE; InterPro 37.7 18 0.0004 32.6 1.5 37 72-108 11-47 (165)
418 TIGR03185 DNA_S_dndD DNA sulfu 37.5 91 0.002 34.7 7.2 36 65-100 209-251 (650)
419 cd02523 PC_cytidylyltransferas 37.5 2.4E+02 0.0051 26.2 9.1 93 167-272 30-126 (229)
420 KOG4196 bZIP transcription fac 37.3 1.3E+02 0.0028 26.9 6.5 27 69-95 85-111 (135)
421 PRK09343 prefoldin subunit bet 37.3 1.1E+02 0.0024 26.6 6.3 42 65-106 71-112 (121)
422 PRK13922 rod shape-determining 37.2 60 0.0013 31.9 5.2 27 66-92 70-96 (276)
423 TIGR01062 parC_Gneg DNA topois 37.1 1.1E+02 0.0025 34.8 7.8 87 66-165 417-505 (735)
424 PRK11546 zraP zinc resistance 37.0 3.2E+02 0.007 24.8 9.2 41 59-99 41-81 (143)
425 KOG4119 G protein gamma subuni 36.8 98 0.0021 24.8 5.2 35 83-117 11-45 (71)
426 PRK00753 psbL photosystem II r 36.7 30 0.00066 24.2 2.0 22 19-40 18-39 (39)
427 PF10473 CENP-F_leu_zip: Leuci 36.6 1.6E+02 0.0035 26.5 7.3 43 66-108 67-109 (140)
428 PF14282 FlxA: FlxA-like prote 36.4 1E+02 0.0022 26.2 5.8 22 64-85 18-39 (106)
429 PRK02793 phi X174 lysis protei 36.3 1.4E+02 0.003 23.7 6.1 48 70-117 6-53 (72)
430 PRK10698 phage shock protein P 36.3 1.1E+02 0.0024 29.4 6.7 39 64-102 98-136 (222)
431 PF07888 CALCOCO1: Calcium bin 36.2 96 0.0021 34.1 6.8 22 77-98 155-176 (546)
432 PF10224 DUF2205: Predicted co 36.1 1.3E+02 0.0028 24.6 6.0 39 73-111 24-62 (80)
433 PF04568 IATP: Mitochondrial A 36.0 64 0.0014 27.5 4.4 10 84-93 88-97 (100)
434 PF12804 NTP_transf_3: MobA-li 35.9 1.1E+02 0.0024 26.6 6.2 74 167-254 25-100 (160)
435 PF09969 DUF2203: Uncharacteri 35.8 1.2E+02 0.0025 26.6 6.1 66 65-134 20-87 (120)
436 PHA02414 hypothetical protein 35.8 1.1E+02 0.0024 26.0 5.6 43 75-117 32-74 (111)
437 TIGR00511 ribulose_e2b2 ribose 35.7 1.3E+02 0.0027 30.4 7.3 54 152-208 114-173 (301)
438 PF05659 RPW8: Arabidopsis bro 35.6 32 0.00068 31.2 2.6 35 65-99 44-79 (147)
439 PF13851 GAS: Growth-arrest sp 35.3 1.3E+02 0.0029 28.5 7.0 37 67-103 50-86 (201)
440 PF11365 DUF3166: Protein of u 35.2 2.8E+02 0.006 23.5 8.3 42 66-114 2-43 (96)
441 PF03414 Glyco_transf_6: Glyco 35.1 1.6E+02 0.0035 30.4 7.8 108 136-257 82-205 (337)
442 cd07429 Cby_like Chibby, a nuc 35.1 1.4E+02 0.003 25.9 6.3 36 61-96 68-103 (108)
443 PRK14156 heat shock protein Gr 35.0 39 0.00084 31.7 3.2 123 60-197 16-139 (177)
444 PF06428 Sec2p: GDP/GTP exchan 34.9 2.2E+02 0.0048 24.2 7.5 46 72-117 8-61 (100)
445 KOG4797 Transcriptional regula 34.8 75 0.0016 27.5 4.5 30 64-93 66-95 (123)
446 PF00038 Filament: Intermediat 34.8 1.2E+02 0.0025 30.2 6.8 48 68-115 205-252 (312)
447 PRK10963 hypothetical protein; 34.8 1.1E+02 0.0023 29.5 6.3 47 66-112 38-84 (223)
448 PF10845 DUF2576: Protein of u 34.7 54 0.0012 23.9 3.1 20 75-94 14-33 (48)
449 PF14282 FlxA: FlxA-like prote 34.7 1.7E+02 0.0036 24.9 6.8 15 65-79 26-40 (106)
450 PRK07352 F0F1 ATP synthase sub 34.6 3.6E+02 0.0078 24.6 9.6 38 64-101 49-86 (174)
451 TIGR02417 fruct_sucro_rep D-fr 34.6 4.4E+02 0.0095 25.6 13.0 95 142-242 77-179 (327)
452 TIGR03510 XapX XapX domain. Th 34.5 39 0.00085 25.1 2.5 19 16-34 2-20 (49)
453 cd06534 ALDH-SF NAD(P)+-depend 34.5 5E+02 0.011 26.2 14.2 134 62-198 14-167 (367)
454 PRK14143 heat shock protein Gr 34.4 1E+02 0.0022 30.3 6.1 42 70-111 65-106 (238)
455 PRK14139 heat shock protein Gr 34.4 98 0.0021 29.2 5.8 33 73-105 33-65 (185)
456 PF07716 bZIP_2: Basic region 34.4 1.1E+02 0.0023 22.6 4.9 28 72-99 25-52 (54)
457 PF02388 FemAB: FemAB family; 34.3 68 0.0015 33.6 5.3 30 70-99 240-269 (406)
458 PRK09526 lacI lac repressor; R 34.2 4.5E+02 0.0098 25.7 11.7 98 142-242 80-182 (342)
459 KOG1962 B-cell receptor-associ 34.2 1.1E+02 0.0024 29.6 6.1 39 77-115 149-187 (216)
460 TIGR02976 phageshock_pspB phag 34.1 2.1E+02 0.0045 23.1 6.8 15 20-34 11-25 (75)
461 PF14389 Lzipper-MIP1: Leucine 34.0 1.7E+02 0.0036 24.1 6.5 60 77-152 6-65 (88)
462 PF08537 NBP1: Fungal Nap bind 33.9 82 0.0018 32.2 5.5 48 72-119 175-222 (323)
463 COG2900 SlyX Uncharacterized p 33.9 2.5E+02 0.0054 22.6 7.9 29 64-92 7-35 (72)
464 PTZ00454 26S protease regulato 33.9 77 0.0017 33.3 5.6 37 65-101 22-58 (398)
465 cd01107 HTH_BmrR Helix-Turn-He 33.8 92 0.002 26.2 5.1 33 64-96 74-106 (108)
466 TIGR03142 cytochro_ccmI cytoch 33.8 2.6E+02 0.0057 23.9 8.0 19 16-34 4-22 (117)
467 PF05667 DUF812: Protein of un 33.5 95 0.0021 34.5 6.4 51 67-117 330-380 (594)
468 KOG0250 DNA repair protein RAD 33.5 86 0.0019 36.9 6.2 18 157-174 502-519 (1074)
469 PF07061 Swi5: Swi5; InterPro 33.5 70 0.0015 26.2 4.1 29 67-95 2-30 (83)
470 COG5374 Uncharacterized conser 33.4 2.4E+02 0.0051 26.7 7.9 41 68-108 146-186 (192)
471 cd01108 HTH_CueR Helix-Turn-He 33.4 1E+02 0.0022 26.7 5.5 34 63-96 77-110 (127)
472 PF00535 Glycos_transf_2: Glyc 33.3 1.6E+02 0.0035 24.5 6.7 90 155-258 1-97 (169)
473 KOG1318 Helix loop helix trans 33.3 62 0.0013 34.2 4.7 36 64-99 289-324 (411)
474 KOG0837 Transcriptional activa 33.3 64 0.0014 32.1 4.5 35 64-98 233-267 (279)
475 PRK14872 rod shape-determining 33.3 92 0.002 32.1 5.8 82 14-99 10-91 (337)
476 PRK00137 rplI 50S ribosomal pr 33.2 1.1E+02 0.0025 27.5 5.9 33 64-96 41-73 (147)
477 PHA01750 hypothetical protein 33.2 1.8E+02 0.0039 23.0 6.0 31 68-98 30-61 (75)
478 PF14235 DUF4337: Domain of un 33.1 90 0.002 28.6 5.2 40 67-106 68-107 (157)
479 PF05276 SH3BP5: SH3 domain-bi 33.0 1.5E+02 0.0032 29.2 7.0 40 77-116 182-221 (239)
480 COG1579 Zn-ribbon protein, pos 33.0 1.5E+02 0.0033 29.1 7.1 48 64-111 88-135 (239)
481 COG2433 Uncharacterized conser 32.9 1.2E+02 0.0025 33.8 6.7 36 64-99 428-463 (652)
482 PF02419 PsbL: PsbL protein; 32.9 13 0.00029 25.7 -0.2 20 20-39 17-36 (37)
483 PF10481 CENP-F_N: Cenp-F N-te 32.8 63 0.0014 32.4 4.3 35 58-100 272-306 (307)
484 PRK14151 heat shock protein Gr 32.7 73 0.0016 29.7 4.6 34 73-106 21-54 (176)
485 cd04785 HTH_CadR-PbrR-like Hel 32.7 98 0.0021 26.8 5.2 34 64-97 78-111 (126)
486 PF10205 KLRAQ: Predicted coil 32.7 1.8E+02 0.0039 24.9 6.5 39 68-106 15-53 (102)
487 PRK14145 heat shock protein Gr 32.7 1E+02 0.0022 29.4 5.6 37 70-106 43-79 (196)
488 TIGR01843 type_I_hlyD type I s 32.6 1.2E+02 0.0026 31.0 6.7 42 74-115 139-180 (423)
489 KOG0239 Kinesin (KAR3 subfamil 32.6 1E+02 0.0022 34.7 6.6 54 65-118 241-294 (670)
490 PF09278 MerR-DNA-bind: MerR, 32.6 1.1E+02 0.0024 22.8 5.0 29 64-92 35-63 (65)
491 TIGR02449 conserved hypothetic 32.5 2.5E+02 0.0054 22.1 6.9 45 65-109 14-58 (65)
492 cd00632 Prefoldin_beta Prefold 32.5 1.2E+02 0.0025 25.5 5.5 36 66-101 64-99 (105)
493 COG3155 ElbB Uncharacterized p 32.4 1.2E+02 0.0025 28.4 5.7 105 89-202 62-168 (217)
494 PF07321 YscO: Type III secret 32.4 1.7E+02 0.0037 26.7 6.9 49 65-113 74-122 (152)
495 PF00261 Tropomyosin: Tropomyo 32.3 1.9E+02 0.0042 27.9 7.7 42 65-106 15-56 (237)
496 PF10226 DUF2216: Uncharacteri 32.2 1.6E+02 0.0036 27.9 6.8 21 86-106 108-128 (195)
497 TIGR02231 conserved hypothetic 32.2 25 0.00053 38.0 1.6 37 66-102 139-175 (525)
498 PF10458 Val_tRNA-synt_C: Valy 32.1 89 0.0019 24.1 4.4 27 69-95 1-27 (66)
499 COG4238 Murein lipoprotein [Ce 32.1 1.2E+02 0.0025 24.6 5.0 38 78-115 24-61 (78)
500 cd02071 MM_CoA_mut_B12_BD meth 32.0 2.4E+02 0.0051 24.1 7.5 67 139-205 35-106 (122)
No 1
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=100.00 E-value=1.8e-39 Score=305.74 Aligned_cols=200 Identities=33% Similarity=0.458 Sum_probs=162.9
Q ss_pred CCcEEEEEeCHHHHHHHHHCCCCEEEeCCC--CC--cccccccCcchhhHhhHHHHHHHHHhcCcceEEecccEEeecCc
Q 014357 181 ITNYLVVALDDQTAEYCKTNDIPVYQRDPD--EG--IDSIARKGGNHAVSGLKFRVLREFLQLDYSVLLSDIDIVFLQNP 256 (426)
Q Consensus 181 i~n~lVvAlD~~a~~~c~~~g~~c~~~~~~--~g--~d~~~gs~~f~~m~~~K~~~l~~vL~lGy~VL~sDvDVVWlrnP 256 (426)
++|++|+|+|+++++.|+++|++|+.+... .. ....+++..|+.++|.|+.+++++|++||+|+++|+||||+|||
T Consensus 3 ~~~~lv~a~D~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp 82 (212)
T PF03407_consen 3 IDNFLVVALDEETYDALEELGPPCFYFPSDASESEDSAFRFGSKAFQKLTWLKPKVLLDLLELGYDVLFSDADVVWLRDP 82 (212)
T ss_pred cccEEEEEECHHHHHHHHhcCCCeEEEecccccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCCceEEecCCEEEecCc
Confidence 689999999999999999999999887654 11 33556889999999999999999999999999999999999999
Q ss_pred cccc-ccCCcEeeccCCCCCCcccCCCCCCCCCccchhhhcccccceecceeEEEEecChhHHHHHHHHHHHhC-CCCCC
Q 014357 257 FEYL-YRDSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRIWVFNSGFFYIRPTIPSIELLDRVADRLG-KEKAW 334 (426)
Q Consensus 257 ~~~~-~~daDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~~~~~~~~NtGf~y~R~T~~s~~fl~~w~~rl~-~~~~~ 334 (426)
+++| +.++|+++++|+.......+ ....+|+||||+|||++|++|++.|..++. .++.+
T Consensus 83 ~~~~~~~~~Di~~~~d~~~~~~~~~-------------------~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~~~~~ 143 (212)
T PF03407_consen 83 LPYFENPDADILFSSDGWDGTNSDR-------------------NGNLVNTGFYYFRPTPRTIAFLEDWLERMAESPGCW 143 (212)
T ss_pred HHhhccCCCceEEecCCCcccchhh-------------------cCCccccceEEEecCHHHHHHHHHHHHHHHhCCCcc
Confidence 9999 78999999999875321110 011479999999999999999999988876 45778
Q ss_pred chHHHHHHhcCCCCCCCCCccceEEeccccccCCCceehhhcchhhhcc-CCCeEEEEeCCc---cChHHHH
Q 014357 335 DQAVFNEELFFPSHPGYYGLHASKRVMDFYLFMNSKVLFKTVRKDANLK-KLKPVVVHVNYH---PDKFPRM 402 (426)
Q Consensus 335 DQ~afN~ll~~ps~~~~~gl~v~v~~Lp~~~F~nG~~~F~~~R~~~~~~-~~~P~iVH~N~~---~~K~~Rl 402 (426)
||.+||+++...... . .++.+++||..+||||+.||.+.+.+.... +.+||+||+||+ ++|++||
T Consensus 144 DQ~~~n~~l~~~~~~-~--~~~~~~~L~~~~f~~g~~~f~~~~~~~~~~~~~~p~~vH~n~~~g~~~K~~~~ 212 (212)
T PF03407_consen 144 DQQAFNELLREQAAR-Y--GGLRVRFLPPSLFPNGHGYFCQSRDWAWVPTKNKPYIVHANCCDGKEGKRQRF 212 (212)
T ss_pred hHHHHHHHHHhcccC-C--cCcEEEEeCHHHeeccccceeecchhhhhccccccceEEEcCCCChHhHHhhC
Confidence 999999999742211 1 236789999999999999998733333332 589999999998 5566654
No 2
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=98.15 E-value=6.6e-05 Score=72.64 Aligned_cols=191 Identities=21% Similarity=0.251 Sum_probs=111.4
Q ss_pred EcCcchHHHHHHHHHHHHHcCCC-cEEEEEe---CHHHHHHHHHCCCCEEEeCCCCCcccc-cccCcchhhHhhHHHHHH
Q 014357 160 LANSNVKSMLEVWSTNIKRVGIT-NYLVVAL---DDQTAEYCKTNDIPVYQRDPDEGIDSI-ARKGGNHAVSGLKFRVLR 234 (426)
Q Consensus 160 ~~N~~~~d~~~Nwl~slkr~Gi~-n~lVvAl---D~~a~~~c~~~g~~c~~~~~~~g~d~~-~gs~~f~~m~~~K~~~l~ 234 (426)
++|.+|..-+..-+.|+++.+-+ +++|+.. .++..+.+++.+..+..++.....+.. .....+...++.|+.+..
T Consensus 7 ~~~~~Y~~~a~vl~~SL~~~~~~~~~~vl~~~~is~~~~~~L~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~kl~~~~ 86 (240)
T cd02537 7 LTNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVGWIVREVEPIDPPDSANLLKRPRFKDTYTKLRLWN 86 (240)
T ss_pred ecChhHHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHcCCEEEecCccCCcchhhhccchHHHHHhHHHHhcc
Confidence 36779999999999999988632 4444433 456677888888666554432111111 012234455667766654
Q ss_pred HHHhcCc-ceEEecccEEeecCcccccccCCcEeeccCCCCCCcccCCCCCCCCCccchhhhcccccceecceeEEEEec
Q 014357 235 EFLQLDY-SVLLSDIDIVFLQNPFEYLYRDSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRIWVFNSGFFYIRP 313 (426)
Q Consensus 235 ~vL~lGy-~VL~sDvDVVWlrnP~~~~~~daDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~~~~~~~~NtGf~y~R~ 313 (426)
+ ..| .||+.|+|++.++|+-+.|..+..+....|. .|. ..+|+|||.+++
T Consensus 87 -l--~~~drvlylD~D~~v~~~i~~Lf~~~~~~~a~~d~------------------~~~--------~~fNsGv~l~~~ 137 (240)
T cd02537 87 -L--TEYDKVVFLDADTLVLRNIDELFDLPGEFAAAPDC------------------GWP--------DLFNSGVFVLKP 137 (240)
T ss_pred -c--cccceEEEEeCCeeEccCHHHHhCCCCceeeeccc------------------Ccc--------ccccceEEEEcC
Confidence 2 357 6999999999999988877542112221111 111 158999999999
Q ss_pred ChhHHHHHHHHHHHhC---CCCCCchHHHHHHhcCCCCCCCCCccceEEecccc-ccCCCceehhhcchhhhccCCCeEE
Q 014357 314 TIPSIELLDRVADRLG---KEKAWDQAVFNEELFFPSHPGYYGLHASKRVMDFY-LFMNSKVLFKTVRKDANLKKLKPVV 389 (426)
Q Consensus 314 T~~s~~fl~~w~~rl~---~~~~~DQ~afN~ll~~ps~~~~~gl~v~v~~Lp~~-~F~nG~~~F~~~R~~~~~~~~~P~i 389 (426)
+....+ ...+.+. .....||.++|.++.. .+ .+..||.. .+..+..++.. . .......|.+
T Consensus 138 ~~~~~~---~~~~~~~~~~~~~~~DQdiLN~~~~~------~~---~~~~l~~~yN~~~~~~~~~~-~--~~~~~~~~~i 202 (240)
T cd02537 138 SEETFN---DLLDALQDTPSFDGGDQGLLNSYFSD------RG---IWKRLPFTYNALKPLRYLHP-E--ALWFGDEIKV 202 (240)
T ss_pred CHHHHH---HHHHHHhccCCCCCCCHHHHHHHHcC------CC---CEeECCcceeeehhhhccCc-h--hhcccCCcEE
Confidence 765443 3333332 2356899999999841 11 13456543 23333222211 0 0112568999
Q ss_pred EEeCC
Q 014357 390 VHVNY 394 (426)
Q Consensus 390 VH~N~ 394 (426)
+|.+-
T Consensus 203 iHf~g 207 (240)
T cd02537 203 VHFIG 207 (240)
T ss_pred EEEeC
Confidence 99764
No 3
>PLN00176 galactinol synthase
Probab=98.08 E-value=0.00034 Score=71.24 Aligned_cols=187 Identities=17% Similarity=0.196 Sum_probs=105.7
Q ss_pred CCeEEEE--EcCcchHHHHHHHHHHHHHcCCC-cEEEEEeCH---HHHHHHHHCCCCEEEeCCCCCcccccc-cCcchhh
Q 014357 153 GKELIVA--LANSNVKSMLEVWSTNIKRVGIT-NYLVVALDD---QTAEYCKTNDIPVYQRDPDEGIDSIAR-KGGNHAV 225 (426)
Q Consensus 153 d~~VIvt--~~N~~~~d~~~Nwl~slkr~Gi~-n~lVvAlD~---~a~~~c~~~g~~c~~~~~~~g~d~~~g-s~~f~~m 225 (426)
.+...|| .+|..|..=+.....||++.|-+ .++|+.+++ +..+.+++.|..+...++....+.... ...+..+
T Consensus 21 ~~~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s~~~lVvlVt~dVp~e~r~~L~~~g~~V~~V~~i~~~~~~~~~~~~~~~i 100 (333)
T PLN00176 21 AKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQGCIVREIEPVYPPENQTQFAMAYYVI 100 (333)
T ss_pred CceEEEEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEecccCCcccccccccchhhh
Confidence 4566666 46888999889999999999854 456665554 556778888865554443211111100 1123344
Q ss_pred HhhHHHHHHHHHhcCc-ceEEecccEEeecCcccccccCCc-EeeccCCCCCCc--c-----cCCCCCCCCC-ccchhhh
Q 014357 226 SGLKFRVLREFLQLDY-SVLLSDIDIVFLQNPFEYLYRDSD-VESMTDGHNNMT--A-----YGYNDVFDEP-AMGWARY 295 (426)
Q Consensus 226 ~~~K~~~l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~daD-i~~ssD~~~~~t--a-----~g~~dv~ddP-~~~w~r~ 295 (426)
.+.|+++-. +. .| .||+.|+|++-++|--+.|....+ +....|++.+.+ . .|+-. .-| ..+|+..
T Consensus 101 ~~tKl~iw~-l~--~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc~~~~~~~~~p~~~~~~c~--~~~~~~~wp~~ 175 (333)
T PLN00176 101 NYSKLRIWE-FV--EYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIGYCQ--QCPDKVTWPAE 175 (333)
T ss_pred hhhhhhhcc-cc--ccceEEEecCCEEeecChHHHhcCCCcceEEEecccccccccccccccccccc--cchhhccchhh
Confidence 556776443 33 47 599999999999998777754222 444455543211 0 00000 001 1223211
Q ss_pred cccccceecceeEEEEecChhHHHHHHHHHHHhCCCCCCchHHHHHHhc
Q 014357 296 AHTMRIWVFNSGFFYIRPTIPSIELLDRVADRLGKEKAWDQAVFNEELF 344 (426)
Q Consensus 296 a~~~~~~~~NtGf~y~R~T~~s~~fl~~w~~rl~~~~~~DQ~afN~ll~ 344 (426)
........+|+|+|.+.|...+.+-+-++...-..-...||+++|.++.
T Consensus 176 ~g~~~~~yFNSGVlvinps~~~~~~ll~~l~~~~~~~f~DQD~LN~~F~ 224 (333)
T PLN00176 176 LGPPPPLYFNAGMFVFEPSLSTYEDLLETLKITPPTPFAEQDFLNMFFR 224 (333)
T ss_pred ccCCCCCeEEeEEEEEEcCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHc
Confidence 1000112699999999998766433333322211224579999999884
No 4
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=97.91 E-value=9.8e-05 Score=71.17 Aligned_cols=175 Identities=19% Similarity=0.150 Sum_probs=97.0
Q ss_pred EEEEcCcchHHHHHHHHHHHHHcCC---CcEEEEEeC--HHHHHHHHHC----CCC--EEEeCCCCCcccccccCcchhh
Q 014357 157 IVALANSNVKSMLEVWSTNIKRVGI---TNYLVVALD--DQTAEYCKTN----DIP--VYQRDPDEGIDSIARKGGNHAV 225 (426)
Q Consensus 157 Ivt~~N~~~~d~~~Nwl~slkr~Gi---~n~lVvAlD--~~a~~~c~~~----g~~--c~~~~~~~g~d~~~gs~~f~~m 225 (426)
||..+|..|..-+..-+.|+.+..- -++.|++.| ++..+.+++. +.. .+.++...-......+..+..+
T Consensus 3 I~~~~d~~y~~~~~~~l~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 82 (248)
T cd04194 3 IVFAIDDNYAPYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDDFKFFPATTDHISYA 82 (248)
T ss_pred EEEEecHhhHHHHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHHHHhcCCcccccccHH
Confidence 6888999999999999999977533 245566644 5666666664 222 2222211000111022334445
Q ss_pred HhhHHHHHHHHHhcCc-ceEEecccEEeecCcccccccC---CcEeeccCCCCCCcccCCCCCCCCCccchhhhcccccc
Q 014357 226 SGLKFRVLREFLQLDY-SVLLSDIDIVFLQNPFEYLYRD---SDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRI 301 (426)
Q Consensus 226 ~~~K~~~l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~d---aDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~~~~~ 301 (426)
+..|+.+ -.++. .| .||+.|+|++.++|+-+.+..+ .-+.+..|.....+... . . +.......
T Consensus 83 ~y~rl~l-~~ll~-~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~~~~~~~--~----~-----~~~~~~~~ 149 (248)
T cd04194 83 TYYRLLI-PDLLP-DYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFIEQEKKR--K----R-----RLGGYDDG 149 (248)
T ss_pred HHHHHHH-HHHhc-ccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccHHHHHHH--H----h-----hcCCCccc
Confidence 5556544 44455 67 5999999999999988877642 22344455432111000 0 0 00000011
Q ss_pred eecceeEEEEecChhH-HHHHHHHHHHhC----CCCCCchHHHHHHhc
Q 014357 302 WVFNSGFFYIRPTIPS-IELLDRVADRLG----KEKAWDQAVFNEELF 344 (426)
Q Consensus 302 ~~~NtGf~y~R~T~~s-~~fl~~w~~rl~----~~~~~DQ~afN~ll~ 344 (426)
..+|+|+|.+..+.-- ..+.+.+.+.+. .....||.++|.++.
T Consensus 150 ~yfNsGv~l~nl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~ 197 (248)
T cd04194 150 SYFNSGVLLINLKKWREENITEKLLELIKEYGGRLIYPDQDILNAVLK 197 (248)
T ss_pred ceeeecchheeHHHHHHhhhHHHHHHHHHhCCCceeeCChHHHHHHHh
Confidence 2689999999875322 233333333332 234679999999884
No 5
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=97.83 E-value=0.0021 Score=62.13 Aligned_cols=218 Identities=16% Similarity=0.127 Sum_probs=111.0
Q ss_pred EEEEEcCcchHHHHHHHHHHHHHcCC--CcEEEEEeC--HHHHHHHHHC----CCC--EEEeCCCCCcccccccCcchhh
Q 014357 156 LIVALANSNVKSMLEVWSTNIKRVGI--TNYLVVALD--DQTAEYCKTN----DIP--VYQRDPDEGIDSIARKGGNHAV 225 (426)
Q Consensus 156 VIvt~~N~~~~d~~~Nwl~slkr~Gi--~n~lVvAlD--~~a~~~c~~~----g~~--c~~~~~~~g~d~~~gs~~f~~m 225 (426)
++++.++.+|..-+..-+.|+.+..- -++.|+..| ++..+.+.+. +.. .+.++...-........-+...
T Consensus 3 i~~~a~d~~y~~~~~v~i~Sl~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 82 (246)
T cd00505 3 IVIVATGDEYLRGAIVLMKSVLRHRTKPLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVDSEHLKRPIKIV 82 (246)
T ss_pred EEEEecCcchhHHHHHHHHHHHHhCCCCeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcchhhhhcCccccc
Confidence 45666777999999999999877643 245555433 3344444443 111 1111111100000001122233
Q ss_pred HhhHHHHHHHHHhcCc-ceEEecccEEeecCcccccccC---CcEeeccCCCCCCcccCCCCCCCCCccchhhhcccccc
Q 014357 226 SGLKFRVLREFLQLDY-SVLLSDIDIVFLQNPFEYLYRD---SDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRI 301 (426)
Q Consensus 226 ~~~K~~~l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~d---aDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~~~~~ 301 (426)
+..|+ ++-++|. .+ .||+.|+|++.++|.-+.+.-+ .-+.+..|.......-++.. ..++.. ..
T Consensus 83 ~y~RL-~i~~llp-~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~~-----~~~~~~-----~~ 150 (246)
T cd00505 83 TLTKL-HLPNLVP-DYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYRQ-----KRSHLA-----GP 150 (246)
T ss_pred eeHHH-HHHHHhh-ccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhhc-----ccCCCC-----CC
Confidence 44454 3455677 78 5999999999999988777542 23333344331110000000 000000 11
Q ss_pred eecceeEEEEecChhH-HHHHHHHHHH----hCCCCCCchHHHHHHhcCCCCCCCCCccceEEecccc-ccCCCceehhh
Q 014357 302 WVFNSGFFYIRPTIPS-IELLDRVADR----LGKEKAWDQAVFNEELFFPSHPGYYGLHASKRVMDFY-LFMNSKVLFKT 375 (426)
Q Consensus 302 ~~~NtGf~y~R~T~~s-~~fl~~w~~r----l~~~~~~DQ~afN~ll~~ps~~~~~gl~v~v~~Lp~~-~F~nG~~~F~~ 375 (426)
..+|+|+|.+.++.-. ..+++..... .......||+++|.++.. .+ ..+..||.. .+..+. ++..
T Consensus 151 ~yfNsGVmlinl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~~------~~--~~i~~L~~~wN~~~~~-~~~~ 221 (246)
T cd00505 151 DYFNSGVFVVNLSKERRNQLLKVALEKWLQSLSSLSGGDQDLLNTFFKQ------VP--FIVKSLPCIWNVRLTG-CYRS 221 (246)
T ss_pred CceeeeeEEEechHHHHHHHHHHHHHHHHhhcccCccCCcHHHHHHHhc------CC--CeEEECCCeeeEEecC-cccc
Confidence 2689999999998764 3444443322 223467899999998842 11 124566542 221111 1111
Q ss_pred cchhhhccCCCeEEEEeCCc
Q 014357 376 VRKDANLKKLKPVVVHVNYH 395 (426)
Q Consensus 376 ~R~~~~~~~~~P~iVH~N~~ 395 (426)
.+ .......+|.++|.+..
T Consensus 222 ~~-~~~~~~~~~~iiHy~g~ 240 (246)
T cd00505 222 LN-CFKAFVKNAKVIHFNGP 240 (246)
T ss_pred cc-chhhhcCCCEEEEeCCC
Confidence 01 11112458999998754
No 6
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=97.72 E-value=0.00029 Score=66.44 Aligned_cols=215 Identities=15% Similarity=0.101 Sum_probs=108.0
Q ss_pred EEEEcCcchHHHHHHHHHHHHHcCC--CcE-EEEEe---CHHHHHHHHHCCCCEE----EeCCCCCc-----ccccccCc
Q 014357 157 IVALANSNVKSMLEVWSTNIKRVGI--TNY-LVVAL---DDQTAEYCKTNDIPVY----QRDPDEGI-----DSIARKGG 221 (426)
Q Consensus 157 Ivt~~N~~~~d~~~Nwl~slkr~Gi--~n~-lVvAl---D~~a~~~c~~~g~~c~----~~~~~~g~-----d~~~gs~~ 221 (426)
|+.++|..|..-+..-+.|+++..- .++ +.+.. .++..+.+++.+.... ....+... ........
T Consensus 2 i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (250)
T PF01501_consen 2 IVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPDISMLEEFQFNSPSKRH 81 (250)
T ss_dssp EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETSGGHHH--TTS-HCCTC
T ss_pred EEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccchHHhhhhhhhccccccc
Confidence 7889999999999999999988864 344 33233 3345555555443211 00111100 00112233
Q ss_pred chhhHhhHHHHHHHHHhcCc-ceEEecccEEeecCccccccc---CCcEeeccCCCCCCcccCCCCCCCCCccchhhhcc
Q 014357 222 NHAVSGLKFRVLREFLQLDY-SVLLSDIDIVFLQNPFEYLYR---DSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAH 297 (426)
Q Consensus 222 f~~m~~~K~~~l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~---daDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~ 297 (426)
+..++..|+.+-. +| ..| .||+.|+|++.++|+-..|.- +.-+.+..|........+.......+.
T Consensus 82 ~~~~~~~rl~i~~-ll-~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------- 151 (250)
T PF01501_consen 82 FSPATFARLFIPD-LL-PDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFDNFPNKRFPFSERKQ-------- 151 (250)
T ss_dssp GGGGGGGGGGHHH-HS-TTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----HHHHTSTTSSEEECE--------
T ss_pred ccHHHHHHhhhHH-HH-hhcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhhhhhhcccchhhccc--------
Confidence 4556667775544 44 667 599999999999999887753 222333333100000000000000000
Q ss_pred cccceecceeEEEEecChhHHHHH-HHHHHHhC-C---CCCCchHHHHHHhcCCCCCCCCCccceEEeccccc-cCCCce
Q 014357 298 TMRIWVFNSGFFYIRPTIPSIELL-DRVADRLG-K---EKAWDQAVFNEELFFPSHPGYYGLHASKRVMDFYL-FMNSKV 371 (426)
Q Consensus 298 ~~~~~~~NtGf~y~R~T~~s~~fl-~~w~~rl~-~---~~~~DQ~afN~ll~~ps~~~~~gl~v~v~~Lp~~~-F~nG~~ 371 (426)
......+|+|++.+.+..-...-+ +.+...+. . -...||.++|.++. + .+..||... +..+..
T Consensus 152 ~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DQ~~ln~~~~--------~---~~~~L~~~~N~~~~~~ 220 (250)
T PF01501_consen 152 PGNKPYFNSGVMLFNPSKWRKENILQKLIEWLEQNGMKLGFPDQDILNIVFY--------G---NIKPLPCRYNCQPSWY 220 (250)
T ss_dssp STTTTSEEEEEEEEEHHHHHHHHHHHHHHHHHHHTTTT-SSCHHHHHHHHHT--------T---GEEEEEGGGSEEHHHH
T ss_pred CcccccccCcEEEEeechhhhhhhhhhhhhhhhhcccccCcCchHHHhhhcc--------c---eeEEECchhccccccc
Confidence 001126999999999887665433 33333333 2 24679999999884 1 245666532 111111
Q ss_pred ehhhcchhhhccCCCeEEEEeCC
Q 014357 372 LFKTVRKDANLKKLKPVVVHVNY 394 (426)
Q Consensus 372 ~F~~~R~~~~~~~~~P~iVH~N~ 394 (426)
.+..........++.++|.+.
T Consensus 221 --~~~~~~~~~~~~~~~iiHy~g 241 (250)
T PF01501_consen 221 --NQSDDYFNPILEDAKIIHYSG 241 (250)
T ss_dssp --HHTHHHHHHHGCC-SEEE--S
T ss_pred --cccchhhHhhcCCeEEEEeCC
Confidence 110111122357899999866
No 7
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=97.63 E-value=6.5e-05 Score=73.02 Aligned_cols=205 Identities=22% Similarity=0.218 Sum_probs=34.4
Q ss_pred CeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEeCHHHHHHHHHCCCCEEEeCCCCCcccccccCcchhhHhhHHHHH
Q 014357 154 KELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDDQTAEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGLKFRVL 233 (426)
Q Consensus 154 ~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAlD~~a~~~c~~~g~~c~~~~~~~g~d~~~gs~~f~~m~~~K~~~l 233 (426)
+.||||.+|..=.+ +..|-..++.-++.. =.++|+.+|..++......- + ......+|.|+-++
T Consensus 4 ~vvivt~~d~~~~~---------~~~~~~~~~~~~~~N-r~~Ya~~HgY~~~~~~~~~~-~-----~~~~~~~W~K~~~l 67 (239)
T PF05637_consen 4 KVVIVTASDFESCD---------KPSGDWSYLKKSIQN-RVDYARRHGYDLYYRNIQEY-D-----DPERPGSWAKIPAL 67 (239)
T ss_dssp ---------------------------------------HHHHHHHHT-EEEEE-S--S--------SHHHHHHTHHHHH
T ss_pred cccccccccccccc---------cccccccccchhHHH-HHHHHHhcCCEEEEEChHHc-C-----CCCCChhhHHHHHH
Confidence 56888888766321 122323333333333 34789999998877432211 1 12234568999999
Q ss_pred HHHHhcC---cceEEecccEEeecCccc---ccccCC--------cEe-eccCCCCCC-c-ccCCC-CCCCCCccchhhh
Q 014357 234 REFLQLD---YSVLLSDIDIVFLQNPFE---YLYRDS--------DVE-SMTDGHNNM-T-AYGYN-DVFDEPAMGWARY 295 (426)
Q Consensus 234 ~~vL~lG---y~VL~sDvDVVWlrnP~~---~~~~da--------Di~-~ssD~~~~~-t-a~g~~-dv~ddP~~~w~r~ 295 (426)
++.+..= ==|++.|.|++...-=++ ++.... |+- +.-+..... . ..+.+ +++ +..+|
T Consensus 68 r~~m~~~P~~~wv~~lD~Dali~n~~~~L~~~il~p~~L~~~~~r~~~~~p~~~~~~~~~~~~~~~~~li--~t~d~--- 142 (239)
T PF05637_consen 68 RAAMKKYPEAEWVWWLDSDALIMNPDFSLEEHILSPSRLDSLLLRDVPIVPPDSIIKTYSVIDGNDIHLI--ITQDW--- 142 (239)
T ss_dssp HHHHHH-TT-SEEEEE-TTEEE----------------------------------------------------------
T ss_pred HHHHHhCCCCCEEEEEcCCeEEEecccccccccccccccccccccccccccccccccccccccccccccc--ccccc---
Confidence 9999653 248999999998742222 111000 000 001111000 0 00000 011 01111
Q ss_pred cccccceecceeEEEEecChhHHHHHHHHHHHhC--C----CCCCchHHHHHHhcCCCCCCCCCccceEEeccccccCCC
Q 014357 296 AHTMRIWVFNSGFFYIRPTIPSIELLDRVADRLG--K----EKAWDQAVFNEELFFPSHPGYYGLHASKRVMDFYLFMNS 369 (426)
Q Consensus 296 a~~~~~~~~NtGf~y~R~T~~s~~fl~~w~~rl~--~----~~~~DQ~afN~ll~~ps~~~~~gl~v~v~~Lp~~~F~nG 369 (426)
-.+|+|+|++|.++-|+.|++.|...+- . ....||.||-.++.. ++... ..+.++|...|-+
T Consensus 143 ------~gLNtGsFliRns~ws~~fLd~w~~~~~~~~~~~~~~~~EQsAl~~ll~~--~~~~~---~~~~~vpq~~~ns- 210 (239)
T PF05637_consen 143 ------NGLNTGSFLIRNSPWSRDFLDAWADPLYRNYDWDQLEFDEQSALEHLLQW--HPEIL---SKVALVPQRWFNS- 210 (239)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------cccccccccccccccccccccccccccccccccccccccccccccccccc--ccccc---ccccccccccccc-
Confidence 1589999999999999999999976432 1 124689999988853 11111 1234677666533
Q ss_pred ceehhhcchhhhccCCCeEEEEeCCc
Q 014357 370 KVLFKTVRKDANLKKLKPVVVHVNYH 395 (426)
Q Consensus 370 ~~~F~~~R~~~~~~~~~P~iVH~N~~ 395 (426)
...-.. . ..-...+++||..-|
T Consensus 211 y~~~~~-~---~~~~~GDfvvhfaGC 232 (239)
T PF05637_consen 211 YPEDEC-N---YQYKEGDFVVHFAGC 232 (239)
T ss_dssp --------------------------
T ss_pred cccccc-c---ccccccccccccccc
Confidence 111100 0 012457899997544
No 8
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=97.34 E-value=0.003 Score=62.86 Aligned_cols=150 Identities=15% Similarity=0.226 Sum_probs=87.6
Q ss_pred EcCcchHHHHHHHHHHHHHcCCC-cEEEEEeCHH---HHH-------HHHHCCCCEEEeCCCCCcccccccCcchhhHhh
Q 014357 160 LANSNVKSMLEVWSTNIKRVGIT-NYLVVALDDQ---TAE-------YCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGL 228 (426)
Q Consensus 160 ~~N~~~~d~~~Nwl~slkr~Gi~-n~lVvAlD~~---a~~-------~c~~~g~~c~~~~~~~g~d~~~gs~~f~~m~~~ 228 (426)
.+|.+|..-+....+||+++|-+ ..+|+..++- ..+ .+...++.+..++..... .++..+.. +..
T Consensus 7 ~Tn~~YL~gAlvL~~sLr~~gs~~dlVvLvt~~~~~~~~~~~~~~~~~l~~~~~~v~~v~~~~~~---~~~~~~~~-~~t 82 (278)
T cd06914 7 ATNADYLCNALILFEQLRRLGSKAKLVLLVPETLLDRNLDDFVRRDLLLARDKVIVKLIPVIIAS---GGDAYWAK-SLT 82 (278)
T ss_pred ecChhHHHHHHHHHHHHHHhCCCCCEEEEECCCCChhhhhhHHHHHHHhhccCcEEEEcCcccCC---CCCccHHH-HHH
Confidence 45999999999999999999964 3444443331 111 112224433333321110 12223322 355
Q ss_pred HHHHHHHHHhcCc-ceEEecccEEeecCcccccccC-CcEeeccCCCCCCcccCCCCCCCCCccchhhhcccccceecce
Q 014357 229 KFRVLREFLQLDY-SVLLSDIDIVFLQNPFEYLYRD-SDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRIWVFNS 306 (426)
Q Consensus 229 K~~~l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~d-aDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~~~~~~~~Nt 306 (426)
|+.+... ..| .||+.|+|++-++|.-..|..+ ..-+. -|... |.+|+
T Consensus 83 Kl~~~~l---~~y~kvlyLDaD~l~~~~ideLf~~~~~~~~A------------------ap~~~----------~~FNS 131 (278)
T cd06914 83 KLRAFNQ---TEYDRIIYFDSDSIIRHPMDELFFLPNYIKFA------------------APRAY----------WKFAS 131 (278)
T ss_pred HHHhccc---cceeeEEEecCChhhhcChHHHhcCCccccee------------------eecCc----------ceecc
Confidence 6655543 457 5999999999999876666432 10000 01111 25999
Q ss_pred eEEEEecChhHHH-HHHHHHHHhC-CCCCCchHHHHHHhc
Q 014357 307 GFFYIRPTIPSIE-LLDRVADRLG-KEKAWDQAVFNEELF 344 (426)
Q Consensus 307 Gf~y~R~T~~s~~-fl~~w~~rl~-~~~~~DQ~afN~ll~ 344 (426)
|+|.+.|+...-. +++....... .....||+++|.++.
T Consensus 132 Gvmvi~ps~~~~~~l~~~~~~~~~~~~~~~DQdiLN~~~~ 171 (278)
T cd06914 132 HLMVIKPSKEAFKELMTEILPAYLNKKNEYDMDLINEEFY 171 (278)
T ss_pred eeEEEeCCHHHHHHHHHHHHHhcccCCCCCChHHHHHHHh
Confidence 9999999987753 3333333333 335789999999884
No 9
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=96.94 E-value=0.041 Score=54.85 Aligned_cols=238 Identities=14% Similarity=0.085 Sum_probs=112.3
Q ss_pred EEEEEcCcchHHHHHHHHHHHHHc-CC-CcEEEEEeC--HHHHHHHHHC----CCCEEEeCCCC-Cccccc-ccCcchhh
Q 014357 156 LIVALANSNVKSMLEVWSTNIKRV-GI-TNYLVVALD--DQTAEYCKTN----DIPVYQRDPDE-GIDSIA-RKGGNHAV 225 (426)
Q Consensus 156 VIvt~~N~~~~d~~~Nwl~slkr~-Gi-~n~lVvAlD--~~a~~~c~~~----g~~c~~~~~~~-g~d~~~-gs~~f~~m 225 (426)
.||+++ .+|...+.+-+.|+-.- .. -++.|+.-+ ++..+.+.+. +....-.+.+. .....+ .+..+...
T Consensus 4 ~iv~~~-~~y~~~~~~~i~Sil~n~~~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~s~~ 82 (280)
T cd06431 4 AIVCAG-YNASRDVVTLVKSVLFYRRNPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELKSRVSWIPNKHYSGI 82 (280)
T ss_pred EEEEcc-CCcHHHHHHHHHHHHHcCCCCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhhhhhccCcccchhhH
Confidence 566666 88988888888887443 21 144444432 3343444432 22111111110 000011 11111111
Q ss_pred -HhhHHHHHHHHHhcCc-ceEEecccEEeecCccccccc-----CCcEeeccCCCCCCcccCCCCCCCCCccchhhhccc
Q 014357 226 -SGLKFRVLREFLQLDY-SVLLSDIDIVFLQNPFEYLYR-----DSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHT 298 (426)
Q Consensus 226 -~~~K~~~l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~-----daDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~~ 298 (426)
+-.|+ ++-++|..-+ .||+.|+|+|...|..+.+.- +.-+....+.... + |..-.......|...
T Consensus 83 y~y~RL-~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~~~---~-~~~~~~~~~~~~~~~--- 154 (280)
T cd06431 83 YGLMKL-VLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSD---W-YLGNLWKNHRPWPAL--- 154 (280)
T ss_pred HHHHHH-HHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccchh---h-hhhhhhhccCCCccc---
Confidence 11333 3555665446 699999999999999887643 1112222221100 0 000000000001000
Q ss_pred ccceecceeEEEEecCh-hHHHHHHHHH----HHh---CCCCCCchHHHHHHhcCCCCCCCCCccceEEecccc-ccCCC
Q 014357 299 MRIWVFNSGFFYIRPTI-PSIELLDRVA----DRL---GKEKAWDQAVFNEELFFPSHPGYYGLHASKRVMDFY-LFMNS 369 (426)
Q Consensus 299 ~~~~~~NtGf~y~R~T~-~s~~fl~~w~----~rl---~~~~~~DQ~afN~ll~~ps~~~~~gl~v~v~~Lp~~-~F~nG 369 (426)
...+|+|+|++--.. +-..+.+.|. ..+ ......||+++|.++.. ...+ +..||.. -+..+
T Consensus 155 --~~yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQDiLN~v~~~-----~~~~---~~~L~~~wN~~~~ 224 (280)
T cd06431 155 --GRGFNTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDIFNAVIKQ-----NPFL---VYQLPCAWNVQLS 224 (280)
T ss_pred --ccceeeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHcC-----Ccce---eEECCCccccccC
Confidence 015999999986421 1112223332 221 23457899999999841 1110 2345542 23222
Q ss_pred ceehhhcchhhhccCCCeEEEEeCC-----ccChH-HHHHHhhhhhccCccc
Q 014357 370 KVLFKTVRKDANLKKLKPVVVHVNY-----HPDKF-PRMLAIVEFYVNGKQD 415 (426)
Q Consensus 370 ~~~F~~~R~~~~~~~~~P~iVH~N~-----~~~K~-~Rlre~~~wyl~~~~~ 415 (426)
.. +.. +... .....|.+||.+. .+++. +.+|+...-|++.+..
T Consensus 225 ~~-~~~-~~~~-~~~~~p~IIHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~ 273 (280)
T cd06431 225 DH-TRS-EQCY-RDVSDLKVIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGN 273 (280)
T ss_pred cc-chH-hHhh-cCcCCCEEEEeCCCCCCCCcCCCChHHHHHHHHHHhcCch
Confidence 21 111 1001 1246899999985 35665 8888887777766543
No 10
>PLN03181 glycosyltransferase; Provisional
Probab=96.71 E-value=0.04 Score=57.42 Aligned_cols=147 Identities=20% Similarity=0.291 Sum_probs=91.2
Q ss_pred CCCeEEEEEcC-----cchHH-HHHHHHHHHHHcCCCcEEEEEeCHHHHHHHHHCCCCEEEeCCCCCcccccccCcchhh
Q 014357 152 VGKELIVALAN-----SNVKS-MLEVWSTNIKRVGITNYLVVALDDQTAEYCKTNDIPVYQRDPDEGIDSIARKGGNHAV 225 (426)
Q Consensus 152 ~d~~VIvt~~N-----~~~~d-~~~Nwl~slkr~Gi~n~lVvAlD~~a~~~c~~~g~~c~~~~~~~g~d~~~gs~~f~~m 225 (426)
..+.||||..+ ..+.+ ++...+++ =.++|+.+|+.+|..... .+ + -...
T Consensus 127 ~prVViVT~Sdp~~C~~~~gD~~LlriikN-----------------R~dYArrHGY~lf~~~a~--Ld-----~-~~p~ 181 (453)
T PLN03181 127 EERVVMVTGSQPTPCKNPIGDHLLLRFFKN-----------------KVDYCRIHGYDIFYNNAL--LH-----P-KMNS 181 (453)
T ss_pred CCCEEEEECCCCCCCCCcccHHHHHHHHHH-----------------HHHHHHHhCCcEEEeccc--cC-----c-cCch
Confidence 47899999987 33433 33333333 237888888888764321 11 0 1245
Q ss_pred HhhHHHHHHHHHhcCc---ceEEecccEEeecCcccccc--c--CCcEeeccCCCCCCcccCCCCCCCCCccchhhhccc
Q 014357 226 SGLKFRVLREFLQLDY---SVLLSDIDIVFLQNPFEYLY--R--DSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHT 298 (426)
Q Consensus 226 ~~~K~~~l~~vL~lGy---~VL~sDvDVVWlrnP~~~~~--~--daDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~~ 298 (426)
.|.|+-+++..+..-- -+.+.|.|++.+ ||-..+. + +..+++ +|+.+++-+ ...|.
T Consensus 182 ~WaKipalRaAM~a~PeAEWfWWLDsDALIM-Np~~sLPl~ry~~~NLvv----------hg~p~~vy~-~qdw~----- 244 (453)
T PLN03181 182 YWAKLPVVRAAMLAHPEAEWIWWVDSDAVFT-DMDFKLPLHRYRDHNLVV----------HGWPKLIYE-KRSWT----- 244 (453)
T ss_pred hhhHHHHHHHHHHHCCCceEEEEecCCceee-cCCCCCCHhhcCCccccc----------cCCcccccc-ccccc-----
Confidence 7899999998776532 488999999887 5532221 1 222211 122222111 11233
Q ss_pred ccceecceeEEEEecChhHHHHHHHHHHH-------------h----C---CCCCCchHHHHHHhc
Q 014357 299 MRIWVFNSGFFYIRPTIPSIELLDRVADR-------------L----G---KEKAWDQAVFNEELF 344 (426)
Q Consensus 299 ~~~~~~NtGf~y~R~T~~s~~fl~~w~~r-------------l----~---~~~~~DQ~afN~ll~ 344 (426)
.+|+|.|++|.+.=|.+||+.|... + . .+...||.++--+|-
T Consensus 245 ----GlN~GsFLIRNcqWSl~LLDaWa~Mgp~~p~~~~~G~~l~~~l~~r~~~eaDDQsaLvyll~ 306 (453)
T PLN03181 245 ----ALNAGVFLIRNCQWSLDFMDAWASMGPASPEYAKWGKILRSTFKDKLFPESDDQSALVYLLY 306 (453)
T ss_pred ----ccceeeeEEecCHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCCCCCCccchHHHHHHHH
Confidence 5999999999999999999999651 1 1 245789999987773
No 11
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=96.57 E-value=0.021 Score=57.51 Aligned_cols=151 Identities=24% Similarity=0.288 Sum_probs=79.6
Q ss_pred HHHHHhcCc-ceEEecccEEeecCccccccc--CC-c--EeeccCCCCCCcccCCCCCCCCCccchh-hhc-c-ccccee
Q 014357 233 LREFLQLDY-SVLLSDIDIVFLQNPFEYLYR--DS-D--VESMTDGHNNMTAYGYNDVFDEPAMGWA-RYA-H-TMRIWV 303 (426)
Q Consensus 233 l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~--da-D--i~~ssD~~~~~ta~g~~dv~ddP~~~w~-r~a-~-~~~~~~ 303 (426)
+-++|. -+ .||+.|+||+.++|.-+.+.- +- | +....... .+|..+|- +.+ + ......
T Consensus 90 ip~lLp-~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~aA~v~e~------------~~~~~~~~~~~~~~~~~~~~g 156 (304)
T cd06430 90 LPSLLP-DVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAAMAPEH------------EEPNIGWYNRFARHPYYGKTG 156 (304)
T ss_pred HHHHhh-hhceEEEeccceeecCCHHHHHHHHhhcCCCeEEEEEecc------------cccchhhhhhhcccCcccccc
Confidence 445566 44 699999999999988776643 11 1 22222111 01222221 100 0 000114
Q ss_pred cceeEEEEecChhH------------HHHHHHHHHHhCC----CCCCchHHHHHHhcCCCCCCCCCccceEEeccc-ccc
Q 014357 304 FNSGFFYIRPTIPS------------IELLDRVADRLGK----EKAWDQAVFNEELFFPSHPGYYGLHASKRVMDF-YLF 366 (426)
Q Consensus 304 ~NtGf~y~R~T~~s------------~~fl~~w~~rl~~----~~~~DQ~afN~ll~~ps~~~~~gl~v~v~~Lp~-~~F 366 (426)
+|+|+|++-=+.=- ..+-+.|...+.+ -...||++||.++.. +.. .+..||. +-|
T Consensus 157 FNSGVmLmNL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~DQDiLN~v~~~-----~p~---~~~~Lp~~wN~ 228 (304)
T cd06430 157 VNSGVMLMNLTRMRRKYFKNDMTPVGLRWEEILMPLYKKYKLKITWGDQDLINIIFHH-----NPE---MLYVFPCHWNY 228 (304)
T ss_pred cccceeeeeHHHHHhhhcccccchhhhhHHHHHHHHHHhcccCCCCCCHHHHHHHHcC-----CCC---eEEEcCccccC
Confidence 89999998653311 1223334333332 235799999999852 111 1356664 334
Q ss_pred CCCceehhhcchhhhccCCCeEEEEeCC---ccChHHHHHHhh
Q 014357 367 MNSKVLFKTVRKDANLKKLKPVVVHVNY---HPDKFPRMLAIV 406 (426)
Q Consensus 367 ~nG~~~F~~~R~~~~~~~~~P~iVH~N~---~~~K~~Rlre~~ 406 (426)
...|..|...- ......++-++|.|= ++.|-.-+|...
T Consensus 229 ~~d~~~y~~~~--~~~~~~~~~~~H~n~~~~~~~~~~~f~~~~ 269 (304)
T cd06430 229 RPDHCMYGSNC--KAAEEEGVFILHGNRGVYHSDKQPAFRAVY 269 (304)
T ss_pred Cccceeecccc--cccccccceEEEcCCCCCCCccchHHHHHH
Confidence 44555443211 111246899999984 577777777664
No 12
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=96.41 E-value=0.074 Score=55.33 Aligned_cols=122 Identities=26% Similarity=0.401 Sum_probs=76.1
Q ss_pred HHHHHHCCCCEEEeCCCCCcccccccCcchhhHhhHHHHHHHHHhcCc---ceEEecccEEeecCcccc-cc--cCCcEe
Q 014357 194 AEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGLKFRVLREFLQLDY---SVLLSDIDIVFLQNPFEY-LY--RDSDVE 267 (426)
Q Consensus 194 ~~~c~~~g~~c~~~~~~~g~d~~~gs~~f~~m~~~K~~~l~~vL~lGy---~VL~sDvDVVWlrnP~~~-~~--~daDi~ 267 (426)
.++|+.+|+.+++ ... ..+. + ....|.|+-+++.++...- -+.+.|.|.+.+--++.. +. .+.+++
T Consensus 157 ~dYAr~HGY~~fy-n~~-~ld~--~----~p~~WaKlpaLR~aM~~~PeaEWiWWLDsDALImNmsfelPlery~~~NlV 228 (429)
T PLN03182 157 IDYCRLHGIEIFY-NMA-HLDA--E----MAGFWAKLPLLRKLMLAHPEVEWIWWMDSDALFTDMTFEIPLEKYEGYNLV 228 (429)
T ss_pred HHHHHHhCCEEEe-ehh-hcCc--C----CCcchhHHHHHHHHHHHCCCceEEEEecCCceeecCCCCCCHhHcCCcCee
Confidence 3678888877765 211 0110 1 1235889999999987643 478999999997533321 11 122222
Q ss_pred eccCCCCCCcccCCCCC-CCCCccchhhhcccccceecceeEEEEecChhHHHHHHHHHHH-----------------hC
Q 014357 268 SMTDGHNNMTAYGYNDV-FDEPAMGWARYAHTMRIWVFNSGFFYIRPTIPSIELLDRVADR-----------------LG 329 (426)
Q Consensus 268 ~ssD~~~~~ta~g~~dv-~ddP~~~w~r~a~~~~~~~~NtGf~y~R~T~~s~~fl~~w~~r-----------------l~ 329 (426)
+ . ||.+. +.. ..|. .+|+|.|++|.++=|+.|++.|+.. +.
T Consensus 229 i--h--------g~~~~l~~~--kdW~---------GLNtGsFLIRNcqWSldlLDaWa~mgp~~~~~~~~g~~l~~~l~ 287 (429)
T PLN03182 229 I--H--------GWDELVYDQ--KSWI---------GLNTGSFLIRNCQWSLDLLDAWAPMGPKGPIRDEAGKILTAELK 287 (429)
T ss_pred e--c--------cchhhheec--cccC---------ccceeeEEEEcCHHHHHHHHHHHhcCCCCchhhhHHHHHHHhhc
Confidence 2 1 22222 211 1232 5999999999999999999999642 11
Q ss_pred ---CCCCCchHHHHHHhc
Q 014357 330 ---KEKAWDQAVFNEELF 344 (426)
Q Consensus 330 ---~~~~~DQ~afN~ll~ 344 (426)
.....||.++--+|.
T Consensus 288 ~rp~~eaDDQSAlvyLl~ 305 (429)
T PLN03182 288 GRPAFEADDQSALVYLLL 305 (429)
T ss_pred CCCCCCcccHHHHHHHHH
Confidence 234789999998884
No 13
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=96.09 E-value=0.081 Score=45.23 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTA 93 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~ 93 (426)
..++..++++++.++++|++|+.||..|+.
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344555555555555555555555555544
No 14
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=96.00 E-value=0.062 Score=47.49 Aligned_cols=49 Identities=20% Similarity=0.438 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 014357 16 IAIAIVIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQ 90 (426)
Q Consensus 16 ~~~~~~vgv~lg~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~ 90 (426)
|+|+.+||+++|++++.++ .+. ....+.|+.||.+.++|.++-|.+|.+
T Consensus 2 ~~i~lvvG~iiG~~~~r~~-----~~~---------------------~~~q~~l~~eL~~~k~el~~yk~~V~~ 50 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLT-----SSN---------------------QQKQAKLEQELEQAKQELEQYKQEVND 50 (128)
T ss_pred hHHHHHHHHHHHHHHHHHh-----ccc---------------------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999998876 332 123467889999999999999988887
No 15
>PRK11677 hypothetical protein; Provisional
Probab=95.58 E-value=0.041 Score=49.08 Aligned_cols=49 Identities=14% Similarity=0.280 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 014357 16 IAIAIVIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQ 90 (426)
Q Consensus 16 ~~~~~~vgv~lg~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~ 90 (426)
++++++||+++|++++.+. .+. ..+.+.|+.||.+.+.|.++-|+||.+
T Consensus 6 a~i~livG~iiG~~~~R~~-----~~~---------------------~~~q~~le~eLe~~k~ele~YkqeV~~ 54 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFG-----NRK---------------------LRQQQALQYELEKNKAELEEYRQELVS 54 (134)
T ss_pred HHHHHHHHHHHHHHHHhhc-----cch---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777777776644 111 235577888888888888888887765
No 16
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=95.48 E-value=0.63 Score=47.52 Aligned_cols=106 Identities=13% Similarity=0.080 Sum_probs=58.1
Q ss_pred eEEEEEcCcchHHHHHHHHHHHHHcC--CC-cEEEEE--eCHHHHHHHHHC----CCC--EEEeCCCCCcccccccCcch
Q 014357 155 ELIVALANSNVKSMLEVWSTNIKRVG--IT-NYLVVA--LDDQTAEYCKTN----DIP--VYQRDPDEGIDSIARKGGNH 223 (426)
Q Consensus 155 ~VIvt~~N~~~~d~~~Nwl~slkr~G--i~-n~lVvA--lD~~a~~~c~~~----g~~--c~~~~~~~g~d~~~gs~~f~ 223 (426)
.=|+..+|.+|..-+..=+.|+-... .. ++.|+. ++++..+.+++. +.. .+.++.+. ......+..+.
T Consensus 26 i~Iv~~~D~ny~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~id~~~-~~~~~~~~~~s 104 (334)
T PRK15171 26 LDIAYGIDKNFLFGCGVSIASVLLNNPDKSLVFHVFTDYISDADKQRFSALAKQYNTRINIYLINCER-LKSLPSTKNWT 104 (334)
T ss_pred eeEEEECcHhhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeCHHH-HhCCcccCcCC
Confidence 44788889999888888888874332 11 344443 333444444332 322 22222111 01011122334
Q ss_pred hhHhhHHHHHHHHHhcCc-ceEEecccEEeecCccccccc
Q 014357 224 AVSGLKFRVLREFLQLDY-SVLLSDIDIVFLQNPFEYLYR 262 (426)
Q Consensus 224 ~m~~~K~~~l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~ 262 (426)
..+..|+. +-++|...+ .||+.|+|+|-..|--+.+.-
T Consensus 105 ~atY~Rl~-ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~ 143 (334)
T PRK15171 105 YATYFRFI-IADYFIDKTDKVLYLDADIACKGSIKELIDL 143 (334)
T ss_pred HHHHHHHH-HHHhhhhhcCEEEEeeCCEEecCCHHHHHhc
Confidence 44555543 345554456 599999999999988777744
No 17
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=95.21 E-value=0.2 Score=51.12 Aligned_cols=103 Identities=14% Similarity=0.137 Sum_probs=60.9
Q ss_pred EEEEcCcchHHHHHHHHHHH----HHcCCC-cEEEEEeCHHHHHHHHHCCCC--E----EEeCCCCCccccc-ccCcchh
Q 014357 157 IVALANSNVKSMLEVWSTNI----KRVGIT-NYLVVALDDQTAEYCKTNDIP--V----YQRDPDEGIDSIA-RKGGNHA 224 (426)
Q Consensus 157 Ivt~~N~~~~d~~~Nwl~sl----kr~Gi~-n~lVvAlD~~a~~~c~~~g~~--c----~~~~~~~g~d~~~-gs~~f~~ 224 (426)
||-.++.+|..=+..=+.|+ +++.++ |+++.-.+++-.+.+++.-.| + +..+.+. ..... .+..|..
T Consensus 5 Iv~a~D~nY~~~~gvsI~SiL~~n~~~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~~id~~~-~~~~~~~~~~~s~ 83 (325)
T COG1442 5 IAFAFDKNYLIPAGVSIYSLLEHNRKIFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLEVIDIEP-FLDYPPFTKRFSK 83 (325)
T ss_pred EEEEcccccchhHHHHHHHHHHhCccccEEEEEEecCCCHHHHHHHHHHHHhhccceeeEEEechh-hhcccccccchHH
Confidence 66778888854444444443 333344 668888888888877765222 1 1112111 11111 3455666
Q ss_pred hHhhHHHHHHHHHhcCcceEEecccEEeecCcccccc
Q 014357 225 VSGLKFRVLREFLQLDYSVLLSDIDIVFLQNPFEYLY 261 (426)
Q Consensus 225 m~~~K~~~l~~vL~lGy~VL~sDvDVVWlrnP~~~~~ 261 (426)
|+-.|.- +-+++...=.+|++|+|||...+=-..|.
T Consensus 84 ~v~~R~f-iadlf~~~dK~lylD~Dvi~~g~l~~lf~ 119 (325)
T COG1442 84 MVLVRYF-LADLFPQYDKMLYLDVDVIFCGDLSELFF 119 (325)
T ss_pred HHHHHHH-HHHhccccCeEEEEecCEEEcCcHHHHHh
Confidence 7766654 34455556679999999999997655553
No 18
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=94.67 E-value=0.97 Score=49.56 Aligned_cols=326 Identities=14% Similarity=0.139 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH-------------------HHHhhcccccCCc----
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQ-------------------VMVLGEQHKVGPF---- 121 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~-------------------~~~~~~~~~~~~~---- 121 (426)
++++.+..-|...+..--+-+.-++-|++-|+..|..-..+.+| -++|+.+|-.-+-
T Consensus 254 ~k~~~M~~~l~~ak~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs~~l~qlaa~t~PK~lHCL~mRLt~Ey~~~~~~~~~ 333 (657)
T PLN02910 254 DQAKAMGHVLSIAKDQLYDCHTMARKLRAMLQSTERKVDALKKKSAFLIQLAAKTVPKPLHCLPLQLAADYFLLGFQNKD 333 (657)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHHhCchhhcc
Confidence 67777777777777766666777777888888888877777777 2334444333221
Q ss_pred -ccccccccCC-----cccCCCCCchhHHH--HHHHh----cC-CCeEEEEEcCcchHHHHHHHHHH--HHHc-----CC
Q 014357 122 -GTVKALRTNP-----TVVPDESVNPRLAK--ILEEV----AV-GKELIVALANSNVKSMLEVWSTN--IKRV-----GI 181 (426)
Q Consensus 122 -~~~~~~~t~p-----~~~p~~~~~p~L~~--lL~~~----A~-d~~VIvt~~N~~~~d~~~Nwl~s--lkr~-----Gi 181 (426)
....+|.. | +|+.|. -|+. ++.+. .. .+.|+-.+|+.--..-+..|... .+.. ++
T Consensus 334 ~p~~~~l~d-p~l~Hy~ifSDN----VLAaSVVVnSTv~na~~P~k~VFHiVTD~~ny~aM~~WF~~n~~~~A~V~V~ni 408 (657)
T PLN02910 334 YVNKKKLED-PSLYHYAIFSDN----VLATSVVVNSTVLHAKEPQKHVFHIVTDKLNFAAMKMWFIINPPAKATIQVENI 408 (657)
T ss_pred CCChhhccC-CcceeEEEEecc----eeeEEeehhhhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEeeh
Confidence 11111111 1 111111 1111 11111 11 45666666666533444555542 1100 12
Q ss_pred CcEEEEEeCH-HHHHHHHHCCCCEEEeCCCC--C-----cccccccCcchhh-HhhHHHHHHHHHhcCcceEEecccEEe
Q 014357 182 TNYLVVALDD-QTAEYCKTNDIPVYQRDPDE--G-----IDSIARKGGNHAV-SGLKFRVLREFLQLDYSVLLSDIDIVF 252 (426)
Q Consensus 182 ~n~lVvAlD~-~a~~~c~~~g~~c~~~~~~~--g-----~d~~~gs~~f~~m-~~~K~~~l~~vL~lGy~VL~sDvDVVW 252 (426)
+++-..-.+. ...+.++.....-|++.... + .......+.|..+ +..|+. +-++|..=-.||+.|.|||-
T Consensus 409 e~f~wln~~~~pvl~qles~~~~~~yf~~~~~~~~~~~~~~~k~r~p~ylS~lnY~Rf~-LPelLp~l~KVLYLD~DVVV 487 (657)
T PLN02910 409 DDFKWLNSSYCSVLRQLESARIKEYYFKANHPSSLSAGADNLKYRNPKYLSMLNHLRFY-LPEVYPKLEKILFLDDDIVV 487 (657)
T ss_pred hhcccccccccHHHHHHhhhhhhhhhhhccccccccccccccccCCcchhhHHHHHHHH-HHHHhhhcCeEEEEeCCEEe
Confidence 2222222221 33344444333322221110 0 0111122344333 335543 44455521269999999999
Q ss_pred ecCccccccc---CCcEeeccCCCCCCcccCCCCCCCCCccchhhhcccccceecceeEEEEe-----cChhHHHHHHHH
Q 014357 253 LQNPFEYLYR---DSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRIWVFNSGFFYIR-----PTIPSIELLDRV 324 (426)
Q Consensus 253 lrnP~~~~~~---daDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~~~~~~~~NtGf~y~R-----~T~~s~~fl~~w 324 (426)
..|--+.+.- +.-+.+..|+......+.-.--+..|... ..+... .-..|+|++++- -..-+. .++.|
T Consensus 488 ~gDLseLw~iDL~g~v~AAVedc~~~f~r~~~ylnfs~P~i~-~yFNs~--aCyfNsGVmVIDL~~WRe~nITe-~ye~w 563 (657)
T PLN02910 488 QKDLTPLWSIDMQGMVNGAVETCKESFHRFDKYLNFSNPKIS-ENFDPN--ACGWAFGMNMFDLKEWRKRNITG-IYHYW 563 (657)
T ss_pred cCchHHHHhCCcCCceEEEecccchhhhhhhhhhccCChhhh-hccCCC--CceeecccEEEeHHHHHHhhHHH-HHHHH
Confidence 9998776643 22222334442210111000001122110 000000 115788999974 333344 77778
Q ss_pred HHHhCCCCCCchHHHHHHh--cCCCCCCCCCccceEEecccc--ccCCCceehhhcchhhhccCCCeEEEEeCCc-----
Q 014357 325 ADRLGKEKAWDQAVFNEEL--FFPSHPGYYGLHASKRVMDFY--LFMNSKVLFKTVRKDANLKKLKPVVVHVNYH----- 395 (426)
Q Consensus 325 ~~rl~~~~~~DQ~afN~ll--~~ps~~~~~gl~v~v~~Lp~~--~F~nG~~~F~~~R~~~~~~~~~P~iVH~N~~----- 395 (426)
.+.-.....|||.++|-.| + .|. +..||.. ...-|+-... .......|.++|.|..
T Consensus 564 ~eln~~~~L~dqgsLPpgLLvF-------~g~---i~pLD~rWNv~GLGyd~~v-----~~~~i~~AAVLHynG~~KPWl 628 (657)
T PLN02910 564 QDLNEDRTLWKLGSLPPGLITF-------YNL---TYPLDRSWHVLGLGYDPAL-----NQTEIENAAVVHYNGNYKPWL 628 (657)
T ss_pred HHhcccccccccCCCChHHHHH-------hCc---eeecCchheecCCCCCccc-----ccccccCcEEEEeCCCCCccc
Confidence 6654566799999999422 2 111 2334432 1222211110 1112457999999875
Q ss_pred cChHHHHHHhhhhhccCccc
Q 014357 396 PDKFPRMLAIVEFYVNGKQD 415 (426)
Q Consensus 396 ~~K~~Rlre~~~wyl~~~~~ 415 (426)
+.-+++.|..-.-|++.+..
T Consensus 629 ~l~i~~Yr~~W~kYl~~d~~ 648 (657)
T PLN02910 629 DLAIAKYKPYWSRYVQYDNP 648 (657)
T ss_pred ccCcccchHHHHHHccCCCh
Confidence 56667888888778877643
No 19
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=94.54 E-value=0.046 Score=42.36 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 014357 70 LKSDIASLTEKNAELQKQVRQL 91 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l 91 (426)
++.++++++++.++++||+.+|
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4456666666666666666554
No 20
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=94.37 E-value=0.15 Score=51.64 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
..|+.++.+|++||++|+.|+++++++++.+++=..
T Consensus 35 ~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~ 70 (308)
T PF11382_consen 35 DSLEDQFDSLREENDELRAELDALQAQLNAADQFIA 70 (308)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999888877666544
No 21
>PRK15396 murein lipoprotein; Provisional
Probab=94.32 E-value=0.36 Score=39.22 Aligned_cols=59 Identities=19% Similarity=0.388 Sum_probs=46.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Q 014357 59 SSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHK 117 (426)
Q Consensus 59 ~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~ 117 (426)
..|.+..++..|.+|+.+|+.|-+.|+..++.++...+-|+..-.-|-+.+--....||
T Consensus 19 aGCAs~~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~sy~ 77 (78)
T PRK15396 19 AGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQATKYR 77 (78)
T ss_pred HHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666779999999999999999999999999999988877666666555555554443
No 22
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=94.30 E-value=1.2 Score=43.53 Aligned_cols=217 Identities=12% Similarity=0.099 Sum_probs=97.2
Q ss_pred EEEEEcCcchHHHHHHHHHHHHHcCCC--cEEEEE--eCHHHHHHHHH----CCCCE--EEeC-CCCCcccccccCcchh
Q 014357 156 LIVALANSNVKSMLEVWSTNIKRVGIT--NYLVVA--LDDQTAEYCKT----NDIPV--YQRD-PDEGIDSIARKGGNHA 224 (426)
Q Consensus 156 VIvt~~N~~~~d~~~Nwl~slkr~Gi~--n~lVvA--lD~~a~~~c~~----~g~~c--~~~~-~~~g~d~~~gs~~f~~ 224 (426)
|+++.++..|...+..-+.|+-.-.-. ++.|+. +.++-.+.+.+ .+... +.++ +.. .... ....+.
T Consensus 3 i~~~~~~~~y~~~~~v~l~Sll~nn~~~~~fyil~~~is~e~~~~l~~~~~~~~~~i~~i~i~~~~~-~~~~--~~~~~~ 79 (248)
T cd06432 3 IFSVASGHLYERFLRIMMLSVMKNTKSPVKFWFIKNFLSPQFKEFLPEMAKEYGFEYELVTYKWPRW-LHKQ--TEKQRI 79 (248)
T ss_pred EEEEcCcHHHHHHHHHHHHHHHHcCCCCEEEEEEeCCCCHHHHHHHHHHHHHhCCceEEEEecChhh-hhcc--cccchh
Confidence 344566677878778888887543211 333333 33333333333 23322 2222 110 0000 001111
Q ss_pred hHhhHHHHHHHHHhcCc-ceEEecccEEeecCccccccc---CCcEeeccCCCCCCcccCCCCCCCCCccchhhhccccc
Q 014357 225 VSGLKFRVLREFLQLDY-SVLLSDIDIVFLQNPFEYLYR---DSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMR 300 (426)
Q Consensus 225 m~~~K~~~l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~---daDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~~~~ 300 (426)
++..+.-++..+|...+ .||+.|+|+|...|=-+.+.- ++=+.+..|+.......+. ..--.+ -|...- ..+
T Consensus 80 ~~~y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~~Aav~d~~~~~~~~~~--~~~~~~-~~~~~l-~~~ 155 (248)
T cd06432 80 IWGYKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAPYGYTPFCDSRKEMDGF--RFWKQG-YWKSHL-RGR 155 (248)
T ss_pred HHHHHHHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCCCeEEEeeccccchhcccc--hhhhhh-hhhhhc-CCC
Confidence 22233333444787777 699999999998765444432 2212222332211000000 000000 010000 001
Q ss_pred ceecceeEEEEe-----cChhHHHHHHHHHHHhC-C---CCCCchHHHHHHhcCCCCCCCCCccceEEeccccccCCCce
Q 014357 301 IWVFNSGFFYIR-----PTIPSIELLDRVADRLG-K---EKAWDQAVFNEELFFPSHPGYYGLHASKRVMDFYLFMNSKV 371 (426)
Q Consensus 301 ~~~~NtGf~y~R-----~T~~s~~fl~~w~~rl~-~---~~~~DQ~afN~ll~~ps~~~~~gl~v~v~~Lp~~~F~nG~~ 371 (426)
..+|+|+|++- ...-+.++. +....+. . -..+||+++|.++.. . .+..||..- .
T Consensus 156 -~YfNSGVmliNL~~wR~~~i~~~~~-~~~~~l~~~~~~l~~~DQDiLN~v~~~-----~-----~i~~Lp~~w-----~ 218 (248)
T cd06432 156 -PYHISALYVVDLKRFRRIAAGDRLR-GQYQQLSQDPNSLANLDQDLPNNMQHQ-----V-----PIFSLPQEW-----L 218 (248)
T ss_pred -CccceeeEEEeHHHHHHHhHHHHHH-HHHHHHhcCCCccccCCchhhHHHhcc-----C-----CeEECChHH-----H
Confidence 15899999974 322222222 1112232 2 135799999999841 1 145676653 2
Q ss_pred ehhhcchhhhccCCCeEEEEeCCccCh
Q 014357 372 LFKTVRKDANLKKLKPVVVHVNYHPDK 398 (426)
Q Consensus 372 ~F~~~R~~~~~~~~~P~iVH~N~~~~K 398 (426)
|+..+- ++..+.+|-++|..+.+-|
T Consensus 219 ~~~~~~--~~~~~~~~~~~~~~~~~~~ 243 (248)
T cd06432 219 WCETWC--SDESKKKAKTIDLCNNPLT 243 (248)
T ss_pred HHHHHh--cccccCccceeecccCCCC
Confidence 232221 1223678889998665443
No 23
>PHA02047 phage lambda Rz1-like protein
Probab=94.23 E-value=0.23 Score=41.64 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
-++++.|++++..++.+...+++||..|..|
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~k 63 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRHVQAVEAR 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999
No 24
>PLN02742 Probable galacturonosyltransferase
Probab=93.78 E-value=5 Score=43.47 Aligned_cols=172 Identities=15% Similarity=0.182 Sum_probs=87.7
Q ss_pred hHhhHHHHHHHHHhcCcceEEecccEEeecCcccccccC---CcEeeccCCCCCCcccC-CCCCCCCCccchhhhccccc
Q 014357 225 VSGLKFRVLREFLQLDYSVLLSDIDIVFLQNPFEYLYRD---SDVESMTDGHNNMTAYG-YNDVFDEPAMGWARYAHTMR 300 (426)
Q Consensus 225 m~~~K~~~l~~vL~lGy~VL~sDvDVVWlrnP~~~~~~d---aDi~~ssD~~~~~ta~g-~~dv~ddP~~~w~r~a~~~~ 300 (426)
.+-.|+.+-. ++..=-.||+.|+|||...|-.+.+.-+ .=+.+.-|+......|. |-. +.+|.-. ..+....+
T Consensus 339 ~~y~R~~lP~-llp~l~KvlYLD~DvVV~~DL~eL~~~DL~~~viaAVedC~~~f~ry~~yLn-fS~p~i~-~~f~~~aC 415 (534)
T PLN02742 339 LNHLRFYIPE-IYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLETFHRYHKYLN-FSHPLIS-SHFDPDAC 415 (534)
T ss_pred HHHHHHHHHH-HhhccCeEEEEeCCEEecCChHHHhcCCCCCCEEEEeCchhhhhhhhhhhhc-ccchhhh-ccCCCCcc
Confidence 4455654444 5543127999999999999987776442 21233344421111111 000 1112100 00011112
Q ss_pred ceecceeEEEEe-----cChhHHHHHHHHHHHhCCCCCCchHHHHHHhcCCCCCCCCCccceEEecccc-cc-CCCceeh
Q 014357 301 IWVFNSGFFYIR-----PTIPSIELLDRVADRLGKEKAWDQAVFNEELFFPSHPGYYGLHASKRVMDFY-LF-MNSKVLF 373 (426)
Q Consensus 301 ~~~~NtGf~y~R-----~T~~s~~fl~~w~~rl~~~~~~DQ~afN~ll~~ps~~~~~gl~v~v~~Lp~~-~F-~nG~~~F 373 (426)
..|+|++.+- -..-+. .+..|.+.-.+...|||.++|-.+- .+.|. +..||.. .+ .-|+. +
T Consensus 416 --~fNsGV~ViDL~~WRe~nITe-~~~~w~e~n~~~~l~d~gaLpp~LL-----aF~g~---~~~LD~rWNv~gLG~~-~ 483 (534)
T PLN02742 416 --GWAFGMNVFDLVAWRKANVTA-IYHYWQEQNVDRTLWKLGTLPPGLL-----TFYGL---TEPLDRRWHVLGLGYD-T 483 (534)
T ss_pred --ccccCcEEEeHHHHHhhcHHH-HHHHHHHhccccccccccccchHHH-----HHcCc---ceecChhheecccccc-c
Confidence 4699999874 344444 6667876544567899999997531 00111 2334332 11 22221 1
Q ss_pred hhcchhhhccCCCeEEEEeCCc-----cChHHHHHHhhhhhccCccc
Q 014357 374 KTVRKDANLKKLKPVVVHVNYH-----PDKFPRMLAIVEFYVNGKQD 415 (426)
Q Consensus 374 ~~~R~~~~~~~~~P~iVH~N~~-----~~K~~Rlre~~~wyl~~~~~ 415 (426)
. .. . .....|.|+|.|.. +.-+++.|+.-.-|++.+..
T Consensus 484 ~-v~--~-~~i~~aaILHynG~~KPWl~~~i~~yr~~W~kYl~~s~~ 526 (534)
T PLN02742 484 N-ID--P-RLIESAAVLHFNGNMKPWLKLAIERYKPLWERYVNYSHP 526 (534)
T ss_pred c-cc--h-hhccCCeEEEECCCCCcccccCCcccchHHHHHHccCCH
Confidence 1 01 1 12458999999875 55556677766667776643
No 25
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=93.56 E-value=0.21 Score=38.63 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQ 85 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~ 85 (426)
.-+++.++.+++.+++|+++|+
T Consensus 47 r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 47 RRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3456667777777777776653
No 26
>PLN02523 galacturonosyltransferase
Probab=93.47 E-value=8.3 Score=42.00 Aligned_cols=168 Identities=13% Similarity=0.127 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHhcCc-ceEEecccEEeecCcccccccCC---cEeeccCCCCCCcccCCCCCCCCCccchhhhcccccce
Q 014357 227 GLKFRVLREFLQLDY-SVLLSDIDIVFLQNPFEYLYRDS---DVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRIW 302 (426)
Q Consensus 227 ~~K~~~l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~da---Di~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~~~~~~ 302 (426)
..|+. +-+++.. + .||+.|.|||-.+|--+.+.-|- =+.+..|+......|+-.--+..|... ..+....+
T Consensus 365 y~Rf~-IPeLLP~-ldKVLYLD~DVVVq~DLseLw~iDL~gkv~aAVeDc~~~~~r~~~~ln~s~p~i~-~yFNs~aC-- 439 (559)
T PLN02523 365 HLRFY-LPEMYPK-LHRILFLDDDVVVQKDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYLNFSHPLIK-EKFNPKAC-- 439 (559)
T ss_pred HHHHH-HHHHhcc-cCeEEEEeCCEEecCCHHHHHhCcCCCceEEEehhhhhHHHHHHHhhcccchhhh-hCcCCCcc--
Confidence 34543 3445553 5 69999999999999877765321 122233332100001000001111100 00000000
Q ss_pred ecceeEEEEe-----cChhHHHHHHHHHHHhCCCCCCchHHHHH--HhcCCCCCCCCCccceEEecccc--ccCCCceeh
Q 014357 303 VFNSGFFYIR-----PTIPSIELLDRVADRLGKEKAWDQAVFNE--ELFFPSHPGYYGLHASKRVMDFY--LFMNSKVLF 373 (426)
Q Consensus 303 ~~NtGf~y~R-----~T~~s~~fl~~w~~rl~~~~~~DQ~afN~--ll~~ps~~~~~gl~v~v~~Lp~~--~F~nG~~~F 373 (426)
..|+|++++- -..-+.++ ..|...-.....|||.++|- +++. + .+..||.. ...-|+...
T Consensus 440 ~wnsGVmlINL~~WRe~nITek~-~~w~~ln~~~~l~DqdaLpp~LivF~-------g---ri~~LD~rWNvlglGy~~~ 508 (559)
T PLN02523 440 AWAYGMNIFDLDAWRREKCTEQY-HYWQNLNENRTLWKLGTLPPGLITFY-------S---TTKPLDKSWHVLGLGYNPS 508 (559)
T ss_pred cccCCcEEEeHHHHHHhchHHHH-HHHHHhccccccccccccchHHHHhc-------C---ceEecCchhhccCCccCCC
Confidence 3456999874 44444454 45654323457899999973 2221 1 13445432 122222111
Q ss_pred hhcchhhhccCCCeEEEEeCCc-----cChHHHHHHhhhhhccCccc
Q 014357 374 KTVRKDANLKKLKPVVVHVNYH-----PDKFPRMLAIVEFYVNGKQD 415 (426)
Q Consensus 374 ~~~R~~~~~~~~~P~iVH~N~~-----~~K~~Rlre~~~wyl~~~~~ 415 (426)
. . ...-.+|.|+|.|-. +....+.|+.-.-|++-+..
T Consensus 509 i--~---~~~i~~paIIHYnG~~KPWle~~i~~yr~~W~kYl~~~~~ 550 (559)
T PLN02523 509 I--S---MDEIRNAAVIHFNGNMKPWLDIAMNQFKPLWTKYVDYDME 550 (559)
T ss_pred c--c---ccccCCCEEEEECCCCCccccCCCCcchHHHHHHHccCCH
Confidence 1 1 111357999998864 44555666666666666543
No 27
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=93.26 E-value=0.37 Score=47.52 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=50.6
Q ss_pred hhHhhHHHHHHHHHhcCc-ceEEecccEEeecCcccccccCCcEeeccCCCCCCcccCCCCCCCCCccchhhhcccccce
Q 014357 224 AVSGLKFRVLREFLQLDY-SVLLSDIDIVFLQNPFEYLYRDSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRIW 302 (426)
Q Consensus 224 ~m~~~K~~~l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~daDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~~~~~~ 302 (426)
.++-.|+.+- ++|. .+ .||+.|+|+|-.+|=-+.+..+ + .+... | ++.|
T Consensus 99 ~~~y~Rl~ip-~llp-~~~kvlYLD~Dviv~~dl~eL~~~d--l---~~~~~-----a---av~d--------------- 148 (257)
T cd06429 99 LLNFARFYLP-ELFP-KLEKVIYLDDDVVVQKDLTELWNTD--L---GGGVA-----G---AVET--------------- 148 (257)
T ss_pred HHHHHHHHHH-HHhh-hhCeEEEEeCCEEEeCCHHHHhhCC--C---CCCEE-----E---EEhh---------------
Confidence 4455555443 3333 24 6999999999999877766432 1 01110 0 1111
Q ss_pred ecceeEEEEec-----ChhHHHHHHHHHHHhC-----CCCCCchHHHHHHhc
Q 014357 303 VFNSGFFYIRP-----TIPSIELLDRVADRLG-----KEKAWDQAVFNEELF 344 (426)
Q Consensus 303 ~~NtGf~y~R~-----T~~s~~fl~~w~~rl~-----~~~~~DQ~afN~ll~ 344 (426)
.+|+|++++-. ..-+.+++ .|..... .....||+++|.++.
T Consensus 149 yfNsGV~linl~~wr~~~i~~~~~-~~~~~~~~~~~~~~~~~dqd~ln~~~~ 199 (257)
T cd06429 149 SWNPGVNVVNLTEWRRQNVTETYE-KWMELNQEEEVTLWKLITLPPGLIVFY 199 (257)
T ss_pred hcccceEEEeHHHHHhccHHHHHH-HHHHHhhhcccchhhcCCccHHHHHcc
Confidence 38999999864 33333333 3433222 234568999998874
No 28
>PLN02829 Probable galacturonosyltransferase
Probab=93.24 E-value=2.4 Score=46.62 Aligned_cols=170 Identities=14% Similarity=0.122 Sum_probs=87.5
Q ss_pred HhhHHHHHHHHHhcCc-ceEEecccEEeecCccccccc---CCcEeeccCCCCCCcccCCCCCCCCCccchhhhcccccc
Q 014357 226 SGLKFRVLREFLQLDY-SVLLSDIDIVFLQNPFEYLYR---DSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRI 301 (426)
Q Consensus 226 ~~~K~~~l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~---daDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~~~~~ 301 (426)
+..|+. +-+++. .+ .||+.|.|||-.+|--+.+.- +.-+.+..|+......|.-.--+.+|... ..+... .
T Consensus 444 nY~Rfy-LPeLLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~~f~r~~~~l~fs~p~i~-~~Fn~~--~ 518 (639)
T PLN02829 444 NHLRFY-LPEIFP-KLNKVLFLDDDIVVQKDLTGLWSIDLKGNVNGAVETCGESFHRFDRYLNFSNPLIS-KNFDPH--A 518 (639)
T ss_pred HHHHHH-HHHHhc-ccCeEEEEeCCEEeCCChHHHHhCCCCCceEEEeccchhhhhhhhhhhhccchHhh-hccCCc--c
Confidence 345543 344555 34 699999999999988777643 22222334432211111000001112100 000001 1
Q ss_pred eecceeEEEE-----ecChhHHHHHHHHHHHhCCCCCCchHHHHHHhcCCCCCCCCCccceEEecccc--ccCCCceehh
Q 014357 302 WVFNSGFFYI-----RPTIPSIELLDRVADRLGKEKAWDQAVFNEELFFPSHPGYYGLHASKRVMDFY--LFMNSKVLFK 374 (426)
Q Consensus 302 ~~~NtGf~y~-----R~T~~s~~fl~~w~~rl~~~~~~DQ~afN~ll~~ps~~~~~gl~v~v~~Lp~~--~F~nG~~~F~ 374 (426)
-.+|+|++++ |-..-+..+. .|...-.+...|||.++|-.|- .+.| .+..||.. .+..|+.+..
T Consensus 519 CyFNSGVmVINL~~WRe~nITe~y~-~wm~~n~~r~L~dlgaLPp~Ll-----~F~g---~i~~LD~rWNv~GLGy~~~v 589 (639)
T PLN02829 519 CGWAYGMNVFDLDEWKRQNITEVYH-SWQKLNHDRQLWKLGTLPPGLI-----TFWK---RTYPLDRSWHVLGLGYNPNV 589 (639)
T ss_pred cceecceEEEeHHHHHHhChHHHHH-HHHHHccCCccccccCCChHHH-----HhcC---ceEecChhheecCCCCCccc
Confidence 1589999987 4444444444 7765434557899999997551 0111 13444442 2222322111
Q ss_pred hcchhhhccCCCeEEEEeCCc-----cChHHHHHHhhhhhccCcc
Q 014357 375 TVRKDANLKKLKPVVVHVNYH-----PDKFPRMLAIVEFYVNGKQ 414 (426)
Q Consensus 375 ~~R~~~~~~~~~P~iVH~N~~-----~~K~~Rlre~~~wyl~~~~ 414 (426)
.......|.++|.|.+ +..+++.|..-.-|++.+.
T Consensus 590 -----~~~~i~~aaIIHynG~~KPWle~~i~~yr~lW~kYl~~~~ 629 (639)
T PLN02829 590 -----NQRDIERAAVIHYNGNMKPWLEIGIPKYRNYWSKYVDYDQ 629 (639)
T ss_pred -----chhcccCCeEEEECCCCCccccCCcccchHHHHHHHhcCc
Confidence 1112457899999875 5556677887777777764
No 29
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.22 E-value=0.15 Score=37.01 Aligned_cols=29 Identities=34% Similarity=0.583 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
..|+++..+|.+||++|+.||..|++|++
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56889999999999999999999999875
No 30
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=92.81 E-value=0.68 Score=38.36 Aligned_cols=14 Identities=29% Similarity=0.736 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhc
Q 014357 21 VIGVLVGCVFAFLF 34 (426)
Q Consensus 21 ~vgv~lg~~~a~~~ 34 (426)
++|.+++|++++++
T Consensus 9 ~~~~v~~~i~~y~~ 22 (87)
T PF10883_consen 9 GVGAVVALILAYLW 22 (87)
T ss_pred HHHHHHHHHHHHHH
Confidence 45556677777766
No 31
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=92.81 E-value=1.7 Score=34.46 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 014357 17 AIAIVIGVLVGCVFAFLF 34 (426)
Q Consensus 17 ~~~~~vgv~lg~~~a~~~ 34 (426)
.+++++|.++|...++||
T Consensus 2 ~~g~l~Ga~~Ga~~glL~ 19 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAGLLF 19 (74)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 457788888888888888
No 32
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.29 E-value=0.81 Score=36.56 Aligned_cols=48 Identities=23% Similarity=0.323 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMV 111 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~ 111 (426)
-|.+..|+-++..|++||.+|..+-.+|.+......+.....+.-+..
T Consensus 17 veti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 17 VETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788888888888888888888888888888777777766655443
No 33
>PLN02718 Probable galacturonosyltransferase
Probab=92.14 E-value=21 Score=39.34 Aligned_cols=169 Identities=11% Similarity=0.110 Sum_probs=89.1
Q ss_pred hhHhhHHHHHHHHHhcCcceEEecccEEeecCccccccc---CCcEeeccCCCCCCcccC-CCCC--CCCCccchh--hh
Q 014357 224 AVSGLKFRVLREFLQLDYSVLLSDIDIVFLQNPFEYLYR---DSDVESMTDGHNNMTAYG-YNDV--FDEPAMGWA--RY 295 (426)
Q Consensus 224 ~m~~~K~~~l~~vL~lGy~VL~sDvDVVWlrnP~~~~~~---daDi~~ssD~~~~~ta~g-~~dv--~ddP~~~w~--r~ 295 (426)
..+..|+.+-. ++..=-.||+.|+|||...|-.+.+.- +.-+.+-.|+......++ +... +.+| |. .+
T Consensus 403 ~~~y~Rl~ipe-llp~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~~~~~~~~~~~~~lnfs~p---~i~~~f 478 (603)
T PLN02718 403 ALNHARFYLPD-IFPGLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFRSMDTFINFSDP---WVAKKF 478 (603)
T ss_pred HHHHHHHHHHH-HhcccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEeccccccccchhhhhhhhhccch---hhhccc
Confidence 34455655443 444312699999999999998777643 222223344422100000 0000 1111 10 01
Q ss_pred cccccceecceeEEEEe-----cChhHHHHHHHHHHHhCCCCCCchHHHH---HHhcCCCCCCCCCccceEEecccc--c
Q 014357 296 AHTMRIWVFNSGFFYIR-----PTIPSIELLDRVADRLGKEKAWDQAVFN---EELFFPSHPGYYGLHASKRVMDFY--L 365 (426)
Q Consensus 296 a~~~~~~~~NtGf~y~R-----~T~~s~~fl~~w~~rl~~~~~~DQ~afN---~ll~~ps~~~~~gl~v~v~~Lp~~--~ 365 (426)
.+.. -.+|+|++.+- -..-+.. +..|...-.....|||.++| .++. + .+..||.. .
T Consensus 479 n~~~--CyfNsGVlLIDLk~WReenITe~-~~~~l~~n~~~~l~dqdaLpp~LlvF~--------g---ri~~LD~rWNv 544 (603)
T PLN02718 479 DPKA--CTWAFGMNLFDLEEWRRQKLTSV-YHKYLQLGVKRPLWKAGSLPIGWLTFY--------N---QTVALDKRWHV 544 (603)
T ss_pred CCCc--cccccceEEEeHHHHHhcChHHH-HHHHHHhccCccccCcccccHHHHHhc--------C---ceeecChHHhc
Confidence 1111 15789999874 3333333 44565443344689999988 3331 1 13456543 2
Q ss_pred cCCCceehhhcchhhhccCCCeEEEEeCCc-----cChHHHHHHhhhhhccCccc
Q 014357 366 FMNSKVLFKTVRKDANLKKLKPVVVHVNYH-----PDKFPRMLAIVEFYVNGKQD 415 (426)
Q Consensus 366 F~nG~~~F~~~R~~~~~~~~~P~iVH~N~~-----~~K~~Rlre~~~wyl~~~~~ 415 (426)
.+.|+.+.. . .. ....|.|+|.|.. +.-+.+.|+.-.=|++-+..
T Consensus 545 ~gLG~~~~i--~--~~-~i~~aaIIHYnG~~KPWle~~i~~yr~~W~k~v~~~~~ 594 (603)
T PLN02718 545 LGLGHESGV--G--AS-DIEQAAVIHYDGVMKPWLDIGIGKYKRYWNIHVPYHHP 594 (603)
T ss_pred cCccccccc--c--cc-ccCCCEEEEECCCCCccccCChhhHHHHHHhhcCCCCh
Confidence 333432211 1 11 2468999998874 66778889888888887754
No 34
>PLN02769 Probable galacturonosyltransferase
Probab=91.61 E-value=10 Score=41.98 Aligned_cols=164 Identities=13% Similarity=0.045 Sum_probs=80.7
Q ss_pred hHhhHHHHHHHHHhcCcceEEecccEEeecCcccccccC---CcEeeccCCCCCCcccCCCCCCCCCccchhhhcccccc
Q 014357 225 VSGLKFRVLREFLQLDYSVLLSDIDIVFLQNPFEYLYRD---SDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRI 301 (426)
Q Consensus 225 m~~~K~~~l~~vL~lGy~VL~sDvDVVWlrnP~~~~~~d---aDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~~~~~ 301 (426)
++..|+. |=+++..=-.||+.|.|||-.+|-.+.+.-| .-+.+..|+......++ ....+. . +....+
T Consensus 438 ~nh~Rfy-IPELLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~rl~~~~--~yl~~~--~---F~~~~C- 508 (629)
T PLN02769 438 FSHSHFL-LPEIFKKLKKVVVLDDDVVVQRDLSFLWNLDMGGKVNGAVQFCGVRLGQLK--NYLGDT--N---FDTNSC- 508 (629)
T ss_pred HHHHHHH-HHHHhhhcCeEEEEeCCEEecCcHHHHhcCCCCCCeEEEehhhhhhhhhhh--hhhccc--C---CCcccc-
Confidence 3455654 4445552127999999999999987777532 11222223211000000 000000 0 000011
Q ss_pred eecceeEEEEe-----cChhHHHHHHHHHHHhC--CCCCCc---hHHHHHHhcCCCCCCCCCccceEEeccccc-c-CCC
Q 014357 302 WVFNSGFFYIR-----PTIPSIELLDRVADRLG--KEKAWD---QAVFNEELFFPSHPGYYGLHASKRVMDFYL-F-MNS 369 (426)
Q Consensus 302 ~~~NtGf~y~R-----~T~~s~~fl~~w~~rl~--~~~~~D---Q~afN~ll~~ps~~~~~gl~v~v~~Lp~~~-F-~nG 369 (426)
.+|+|++++- -..-+..++ .|...+. ....|+ |+++|.++. + .+..||..- + .-|
T Consensus 509 -yFNSGVLLINL~~WRk~nITe~~~-~~~~~~~~~~~~~~~~~~Lp~lnlvF~--------g---~v~~LD~rWNv~gLG 575 (629)
T PLN02769 509 -AWMSGLNVIDLDKWRELDVTETYL-KLLQKFSKDGEESLRAAALPASLLTFQ--------D---LIYPLDDRWVLSGLG 575 (629)
T ss_pred -ccccCeeEeeHHHHHHhCHHHHHH-HHHHHhhhcccccccccCcCHHHHHhc--------C---eEEECCHHHcccccc
Confidence 4799999974 333333333 3544332 234454 444554442 1 235565532 2 123
Q ss_pred ceehhhcchhhhccCCCeEEEEeCCc-----cChHHHHHHhhhhhccCccc
Q 014357 370 KVLFKTVRKDANLKKLKPVVVHVNYH-----PDKFPRMLAIVEFYVNGKQD 415 (426)
Q Consensus 370 ~~~F~~~R~~~~~~~~~P~iVH~N~~-----~~K~~Rlre~~~wyl~~~~~ 415 (426)
+.|.- . .+ ....|.|+|.|-. +.-.++.|+.-.-|++.+..
T Consensus 576 ~~~~i--~--~~-~i~~paIIHYnG~~KPW~e~~i~~yr~~W~kYl~~~~~ 621 (629)
T PLN02769 576 HDYGI--D--EQ-AIKKAAVLHYNGNMKPWLELGIPKYKKYWKRFLNRDDR 621 (629)
T ss_pred ccccc--c--cc-ccCCcEEEEECCCCCCccCCCCChHHHHHHHHhccCCh
Confidence 22211 1 11 2459999998853 44556788888888887754
No 35
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=91.08 E-value=0.66 Score=37.40 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
...+..+++++..++.||++|+.|+..|+..=+.
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rI 63 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAELSRHERI 63 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 4567888999999999999999999988876443
No 36
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=90.81 E-value=1.4 Score=33.61 Aligned_cols=53 Identities=21% Similarity=0.360 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
..++..|.+++.+|..|-+.|..+|+.|+..++.|...-..|-+.+-.....|
T Consensus 2 ~akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 2 NAKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence 46788899999999999999999999998888777666555555555544444
No 37
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=90.80 E-value=0.85 Score=45.62 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=29.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHhhcc
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRLAEQ---GKDQAQKQVMVLGEQ 115 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~a~q---g~~~a~~~~~~~~~~ 115 (426)
.++.++.+||++||+|+.+|.++++.+.+ ..++-.++++.+.++
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~~ 112 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPLS 112 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 35577899999999999999777766533 222223555555443
No 38
>PLN02867 Probable galacturonosyltransferase
Probab=90.79 E-value=25 Score=38.38 Aligned_cols=177 Identities=14% Similarity=0.119 Sum_probs=85.9
Q ss_pred Ccchh-hHhhHHHHHHHHHhcCc-ceEEecccEEeecCcccccccCC---cEeeccCCCCCCcc-cC--CCCCC--CCCc
Q 014357 220 GGNHA-VSGLKFRVLREFLQLDY-SVLLSDIDIVFLQNPFEYLYRDS---DVESMTDGHNNMTA-YG--YNDVF--DEPA 289 (426)
Q Consensus 220 ~~f~~-m~~~K~~~l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~da---Di~~ssD~~~~~ta-~g--~~dv~--ddP~ 289 (426)
+.|.. ++..|+.+ -+++. -+ .||+.|.|||-.+|--+.+.-|- -+.+-.|.+...+. .+ +.+.+ .+|.
T Consensus 325 pkylS~lnYlRflI-PeLLP-~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~~~~~~~~~YlNfsnp~ 402 (535)
T PLN02867 325 PSCLSLLNHLRIYI-PELFP-DLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFSHPL 402 (535)
T ss_pred hhhhhHHHHHHHHH-HHHhh-ccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEeccccccccccchhhhhhccccchh
Confidence 44433 34566544 34455 34 69999999999998877765421 12222222110000 00 00111 1120
Q ss_pred cchhhhcccccceecceeEEEEe-----cChhHHHHHHHHHHHhC--CCCCCchHHHHHHhcCCCCCCCCCccceEEecc
Q 014357 290 MGWARYAHTMRIWVFNSGFFYIR-----PTIPSIELLDRVADRLG--KEKAWDQAVFNEELFFPSHPGYYGLHASKRVMD 362 (426)
Q Consensus 290 ~~w~r~a~~~~~~~~NtGf~y~R-----~T~~s~~fl~~w~~rl~--~~~~~DQ~afN~ll~~ps~~~~~gl~v~v~~Lp 362 (426)
.. ..... ..-.+|+|++++- -..-+.+ +..|...-. ....|||+++|..|- -..| .+..||
T Consensus 403 i~-~~~~p--~~cYFNSGVmLINL~~WRe~nITek-~~~~Le~n~~~~~~l~dqd~LN~~Ll-----vF~g---~v~~LD 470 (535)
T PLN02867 403 IS-SNLDQ--ERCAWLYGMNVFDLKAWRRTNITEA-YHKWLKLSLNSGLQLWQPGALPPALL-----AFKG---HVHPID 470 (535)
T ss_pred hh-ccCCC--CCcceecceeeeeHHHHHHhcHHHH-HHHHHHhchhcccccccccccchHHH-----HhcC---cEEECC
Confidence 00 00000 0115899999974 3333333 334544322 246799999997331 0011 135565
Q ss_pred cc-cc-CCCceehhhcchhhhccCCCeEEEEeCCc-----cChHHHHHHhhhhhccCcc
Q 014357 363 FY-LF-MNSKVLFKTVRKDANLKKLKPVVVHVNYH-----PDKFPRMLAIVEFYVNGKQ 414 (426)
Q Consensus 363 ~~-~F-~nG~~~F~~~R~~~~~~~~~P~iVH~N~~-----~~K~~Rlre~~~wyl~~~~ 414 (426)
.. .+ .-|+.+.. ........|.|+|.|-+ +.-.+++|+.-.-|++-+.
T Consensus 471 ~rWNv~gLgy~~~~----~~~~~i~~paIIHYnG~~KPW~e~~~~~yR~~W~kyl~~~~ 525 (535)
T PLN02867 471 PSWHVAGLGSRPPE----VPREILESAAVLHFSGPAKPWLEIGFPEVRSLWYRHVNFSD 525 (535)
T ss_pred hhhcccCCCccccc----chhhhcCCcEEEEECCCCCcccccCCCchhHHHHHhcCccc
Confidence 42 22 22221110 11112468999999853 5566678887777776654
No 39
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=90.67 E-value=0.72 Score=44.20 Aligned_cols=91 Identities=22% Similarity=0.200 Sum_probs=62.2
Q ss_pred hHhhHHHHHHHHHhcCcceEEecccEEeecCccc----ccccCCcEeeccCCCCCCcccCCCCCCCCCccchhhhccccc
Q 014357 225 VSGLKFRVLREFLQLDYSVLLSDIDIVFLQNPFE----YLYRDSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMR 300 (426)
Q Consensus 225 m~~~K~~~l~~vL~lGy~VL~sDvDVVWlrnP~~----~~~~daDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~~~~ 300 (426)
..-+|--++..+|..==-|||.|+||.-. ||-. ++..+.||.. .|.+. .
T Consensus 27 ~fFrRHCvva~~L~~~~~vlflDaDigVv-Np~~~iEefid~~~Di~f-ydR~~----------------n--------- 79 (222)
T PF03314_consen 27 KFFRRHCVVAKILPEYDWVLFLDADIGVV-NPNRRIEEFIDEGYDIIF-YDRFF----------------N--------- 79 (222)
T ss_pred HHHHHHHHHHHHhccCCEEEEEcCCceee-cCcccHHHhcCCCCcEEE-Eeccc----------------c---------
Confidence 45567778888887544699999999765 6754 4444667654 33321 1
Q ss_pred ceecceeEEEEecChhHHHHHHHHHHHh-CCCC---CCchHHHHHHh
Q 014357 301 IWVFNSGFFYIRPTIPSIELLDRVADRL-GKEK---AWDQAVFNEEL 343 (426)
Q Consensus 301 ~~~~NtGf~y~R~T~~s~~fl~~w~~rl-~~~~---~~DQ~afN~ll 343 (426)
|.+.+|-|.+|.|+.+++|+..|+.-- ..|. ..|=.|+-..|
T Consensus 80 -~Ei~agsYlvkNT~~~~~fl~~~a~~E~~lP~sfhGtDNGAlH~~L 125 (222)
T PF03314_consen 80 -WEIAAGSYLVKNTEYSRDFLKEWADYEFKLPNSFHGTDNGALHIFL 125 (222)
T ss_pred -hhhhhccceeeCCHHHHHHHHHHhhhCccCCCccccCccHHHHHHH
Confidence 258899999999999999999997642 1222 44666666555
No 40
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=90.37 E-value=0.34 Score=51.76 Aligned_cols=36 Identities=22% Similarity=0.443 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
.+.+++|| +|.+|++|.+||++|+.+|++|+...|+
T Consensus 24 ~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 24 ADDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred hhhhHHHH-HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 56778888 9999999999999999999999888776
No 41
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.94 E-value=0.98 Score=43.20 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=10.8
Q ss_pred CHHHHHHHHHHHHHH
Q 014357 63 SPERVNMLKSDIASL 77 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~ 77 (426)
.-+|+..|++|++.+
T Consensus 91 ~~~rlp~le~el~~l 105 (206)
T PRK10884 91 LRTRVPDLENQVKTL 105 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 337888888887765
No 42
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=89.85 E-value=1.8 Score=33.41 Aligned_cols=27 Identities=11% Similarity=0.313 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQ 90 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~ 90 (426)
.+|+..|+++|...+++-+.-++|++.
T Consensus 31 EqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 31 EQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666665555555444443
No 43
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.69 E-value=3 Score=40.88 Aligned_cols=34 Identities=29% Similarity=0.294 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
|.-.|..++.++.+|..+|+.|+++|+.++.-.+
T Consensus 51 r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 51 RDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447889999999999999999999999998887
No 44
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.21 E-value=2 Score=39.90 Aligned_cols=52 Identities=17% Similarity=0.311 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
.+.+.|..++.+++++..++.+++.++++.....++.....++.+..+.+.+
T Consensus 88 ~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 139 (191)
T PF04156_consen 88 QQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESI 139 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433344444444444443
No 45
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=89.19 E-value=0.7 Score=46.21 Aligned_cols=21 Identities=14% Similarity=0.442 Sum_probs=18.1
Q ss_pred chhhHHHHHHHHHHHHHHhhc
Q 014357 14 SRIAIAIVIGVLVGCVFAFLF 34 (426)
Q Consensus 14 ~~~~~~~~vgv~lg~~~a~~~ 34 (426)
-|+++|++|||+++-.+...+
T Consensus 85 ~R~~lAvliaivIs~pl~l~i 105 (301)
T PF14362_consen 85 PRLLLAVLIAIVISEPLELKI 105 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999998888766
No 46
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=88.77 E-value=1.5 Score=37.74 Aligned_cols=36 Identities=33% Similarity=0.441 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
+.+..||.++.+|.+||++|+-|-..|+++|...++
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556666666666666666666666666555544
No 47
>smart00338 BRLZ basic region leucin zipper.
Probab=88.76 E-value=1.3 Score=34.15 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
+.+..|..++..|+.+|.+|++++..|+..+....+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999999999999999999888766544
No 48
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=88.54 E-value=1.5 Score=44.92 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=24.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRLAEQGK 102 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~ 102 (426)
++...|.+||++|++|+.+|+++++..++-+
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~ 87 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYEEAN 87 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888999999999999988887765443
No 49
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=88.21 E-value=0.52 Score=37.19 Aligned_cols=27 Identities=26% Similarity=0.577 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQL 91 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l 91 (426)
..++.|++++..++++|++|++|+..|
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555555555555554
No 50
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.02 E-value=1.9 Score=38.78 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
.+|+..|..+++.++.++..+..+|.+|+.|++.+|..-+.++.++..+-...
T Consensus 13 ~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 13 QDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999888888876554433
No 51
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=87.62 E-value=1.6 Score=46.58 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Q 014357 62 ESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQ 115 (426)
Q Consensus 62 ~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~ 115 (426)
+..++...|+.+|++++.|.+++.++..++++||...|....+-++|+.+++.+
T Consensus 73 eqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 73 EMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 445678888888888888888888999999999999998888888888776654
No 52
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=87.59 E-value=1.1 Score=39.96 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 014357 18 IAIVIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQLTA 93 (426)
Q Consensus 18 ~~~~vgv~lg~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~ 93 (426)
=+++-||..|+++.=.+ ||+. .. ..|-..++.++..|+++..+|+.++.++++
T Consensus 81 E~fiF~Va~~li~~E~~-----Rs~~------------ke------~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 81 EAFIFSVAAGLIIYEYW-----RSAR------------KE------AKKEEELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHh------------hH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667888888888877 7654 22 455667777788888888777777777664
No 53
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.51 E-value=1.3 Score=41.10 Aligned_cols=55 Identities=15% Similarity=0.274 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 62 ESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 62 ~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
...+.+..++.++..+.+|..++.+.+++++..+...+......++++....+..
T Consensus 78 ~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 132 (191)
T PF04156_consen 78 RLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERL 132 (191)
T ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445788888999999999999999999999998888888887776666665544
No 54
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=87.30 E-value=9.9 Score=37.56 Aligned_cols=97 Identities=22% Similarity=0.178 Sum_probs=54.7
Q ss_pred EEEEcCcchHHHHHHHHHHHHHcCC--CcEEEEE----eCHHHHHHHHH------CCCCEEEeCCCCCcccccccCcchh
Q 014357 157 IVALANSNVKSMLEVWSTNIKRVGI--TNYLVVA----LDDQTAEYCKT------NDIPVYQRDPDEGIDSIARKGGNHA 224 (426)
Q Consensus 157 Ivt~~N~~~~d~~~Nwl~slkr~Gi--~n~lVvA----lD~~a~~~c~~------~g~~c~~~~~~~g~d~~~gs~~f~~ 224 (426)
||++++..+..++...+..+|++|- +==|+.+ ++++..+.+.. .++-|.......+.+ .. ..+|.
T Consensus 4 IVi~~g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~~q~v~~vd~~~~~~~~~~~~~-~~-~~~~~- 80 (271)
T PF11051_consen 4 IVITAGDKYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLPDQDVWFVDASCVIDPDYLGKS-FS-KKGFQ- 80 (271)
T ss_pred EEEEecCccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhhhhhhheecceEEeeccccccc-cc-cCCch-
Confidence 4444455888888899999999983 3335555 34455544443 233333322111110 00 00111
Q ss_pred hHhhHHHHHHHHHhcCc-ceEEecccEEeecCccccccc
Q 014357 225 VSGLKFRVLREFLQLDY-SVLLSDIDIVFLQNPFEYLYR 262 (426)
Q Consensus 225 m~~~K~~~l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~ 262 (426)
.|+ ..++-.-+ +||+.|+|+|-++||-.+|..
T Consensus 81 ---~K~---lA~l~ssFeevllLDaD~vpl~~p~~lF~~ 113 (271)
T PF11051_consen 81 ---NKW---LALLFSSFEEVLLLDADNVPLVDPEKLFES 113 (271)
T ss_pred ---hhh---hhhhhCCcceEEEEcCCcccccCHHHHhcC
Confidence 232 22333344 799999999999999998853
No 55
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=87.12 E-value=5.4 Score=34.29 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGE 114 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~ 114 (426)
.+++..|.+++.++.++.++||+++.+|.|.-...+-...+..+.+..+.+
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999998888888888888777765
No 56
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=86.98 E-value=2 Score=42.39 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=27.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHH
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQA 105 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a 105 (426)
.++.++.+||.+|++|+.+|+.++..+++-+.+.
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en 102 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQELEQLEAEN 102 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999988776444433
No 57
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=86.00 E-value=6.6 Score=34.07 Aligned_cols=55 Identities=24% Similarity=0.314 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHhhcccccC
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQ-VMVLGEQHKVG 119 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~-~~~~~~~~~~~ 119 (426)
..++..+..++++..+||+.|.++...|.+.+...+.|.+-..++ -..|+ -.++|
T Consensus 49 ~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~l~-~~~~g 104 (117)
T COG2919 49 AADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSELG-MSKPG 104 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhC-CCCCC
Confidence 567777888888888888888888888888888888884433333 34444 44444
No 58
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=85.95 E-value=4.6 Score=31.69 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
.+||..|-....+|.+||+.|+.|+..+++.=+..-+..+.|...+.++-+..
T Consensus 6 e~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 6 AAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788888888999999999999999988887777777778887777665443
No 59
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=85.16 E-value=8.9 Score=39.72 Aligned_cols=176 Identities=18% Similarity=0.112 Sum_probs=97.9
Q ss_pred HHHHHHCCCCEEEeCCCCCcccccccCcchhhHhhHHHHHHHHHhcCcc---eEEecccEEeecCccc----ccccC--C
Q 014357 194 AEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGLKFRVLREFLQLDYS---VLLSDIDIVFLQNPFE----YLYRD--S 264 (426)
Q Consensus 194 ~~~c~~~g~~c~~~~~~~g~d~~~gs~~f~~m~~~K~~~l~~vL~lGy~---VL~sDvDVVWlrnP~~----~~~~d--a 264 (426)
.++|+.+|+..++..... +. ...-....|.|+-+|++.+..--+ +.+.|.|++.+- |-- +++.. -
T Consensus 132 idYA~rHgy~~~~~~~~~--~~---~~~e~~~~W~KiP~Ir~tM~kyP~AeWIWWlD~DAlimn-~~lsL~~~ilk~~~L 205 (364)
T KOG4748|consen 132 IDYARRHGYEFEYKNATL--DK---RYHELPGVWAKLPAIRQTMLKYPDAEWIWWLDQDALIMN-PDLSLQDHILKPENL 205 (364)
T ss_pred HHHHHHhCCeEEEEeccc--cc---ccccccchhHHhHHHHHHHHHCCCCcEEEEecccchhhC-cccchhHHhcCHHHH
Confidence 478999999877755331 10 001134578899999998876553 788899988763 311 11110 0
Q ss_pred cEeecc------CCCC-----CCcccCCCCCCCCCccchhhhcccccceecceeEEEEecChhHHHHHHHHHHH-hC--C
Q 014357 265 DVESMT------DGHN-----NMTAYGYNDVFDEPAMGWARYAHTMRIWVFNSGFFYIRPTIPSIELLDRVADR-LG--K 330 (426)
Q Consensus 265 Di~~ss------D~~~-----~~ta~g~~dv~ddP~~~w~r~a~~~~~~~~NtGf~y~R~T~~s~~fl~~w~~r-l~--~ 330 (426)
+..... ++.+ ..+ |- .|++ ..|.- -.+.-.-.+|+|=+++|.++-++.+++.|-+- +. .
T Consensus 206 ~~~l~~nd~~~~~~~n~~~~~~~~-~~----~d~~-~~~~~-ii~qD~nG~naGSfLirns~~~~~llD~w~dp~l~~~~ 278 (364)
T KOG4748|consen 206 VTHLLRNDQKSINPLNIFRLRPRT-PS----LDDL-EDIAF-IIPQDCNGINAGSFLIRNSEWGRLLLDAWNDPLLYELL 278 (364)
T ss_pred HHhhccccccccccCCcccccccc-cc----ccch-hhhce-ecccCCCCccccceEEecCccchhHHHhccCHHHHhhc
Confidence 000011 1111 111 00 1111 01100 00000114899999999999999999999543 33 2
Q ss_pred CCCCchHHHHHHhcCCCCCCCCCccceEEecccc---ccCCCceehhhcchhhhccCCCeEEEEeCCc
Q 014357 331 EKAWDQAVFNEELFFPSHPGYYGLHASKRVMDFY---LFMNSKVLFKTVRKDANLKKLKPVVVHVNYH 395 (426)
Q Consensus 331 ~~~~DQ~afN~ll~~ps~~~~~gl~v~v~~Lp~~---~F~nG~~~F~~~R~~~~~~~~~P~iVH~N~~ 395 (426)
-...+|.++--.+.. |+- ++-.+.+||.. .|++|+..+.. +..+++||.--|
T Consensus 279 ~~~~Eq~al~~~~e~--h~~---l~~~vgilp~r~ins~~~~~~~~g~--------~egdlvvhFaGC 333 (364)
T KOG4748|consen 279 WGQKEQDALGHFLEN--HPQ---LHSHVGILPLRYINSYPNGAPGYGY--------EEGDLVVHFAGC 333 (364)
T ss_pred cchHHHHHHHHHHhh--chh---hhhheeeccHHHHhcCCCCCCCCcc--------ccCCeEEEeccc
Confidence 345689998887742 222 11224556553 57888775542 348999997665
No 60
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=85.09 E-value=2.9 Score=32.07 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
+.+..|+.++..|+.+|..|++++..|...++...
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888999999999988888888876554
No 61
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=84.77 E-value=3.9 Score=35.62 Aligned_cols=23 Identities=35% Similarity=0.720 Sum_probs=21.4
Q ss_pred ccchhhHHHHHHHHHHHHHHhhc
Q 014357 12 RGSRIAIAIVIGVLVGCVFAFLF 34 (426)
Q Consensus 12 ~~~~~~~~~~vgv~lg~~~a~~~ 34 (426)
+++++.++++||.++|.+.|.||
T Consensus 3 ~~~~~l~G~liGgiiGa~aaLL~ 25 (115)
T COG4980 3 KGKDFLFGILIGGIIGAAAALLF 25 (115)
T ss_pred ccchHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999
No 62
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=84.49 E-value=6 Score=39.11 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
.|..+|..|..|.++||=|+.+++-+|+...+-+.+-..++..+.
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888888888888888888888776666655555543
No 63
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=84.22 E-value=5.7 Score=32.29 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHhhhhhHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQ-------LTAKLRLAEQGKDQAQKQV 109 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~-------l~~kl~~a~qg~~~a~~~~ 109 (426)
-|-|..|+-|+..|++||..|..++.+ |.++.+...|....=+..+
T Consensus 17 vdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888888888888777 5555555544444444333
No 64
>PF15058 Speriolin_N: Speriolin N terminus
Probab=84.17 E-value=1.5 Score=41.25 Aligned_cols=28 Identities=36% Similarity=0.521 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
|..++..|=.||+|||||||=|+|-..+
T Consensus 10 lrhqierLv~ENeeLKKlVrLirEN~eL 37 (200)
T PF15058_consen 10 LRHQIERLVRENEELKKLVRLIRENHEL 37 (200)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4567778889999999999999987433
No 65
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.02 E-value=2.2 Score=41.65 Aligned_cols=50 Identities=14% Similarity=0.259 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 014357 63 SPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVL 112 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~ 112 (426)
+.+|+..+..|-..+..+...|++|+..|+...+..+.--++.++++..|
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555444444444444444444444444444444444333333333333
No 66
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=83.62 E-value=2.7 Score=36.38 Aligned_cols=47 Identities=15% Similarity=0.230 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVM 110 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~ 110 (426)
.+++..|.+++.++.++.++||+++.+|.|.-...+-..++-.+.+.
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555554444444444443333
No 67
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=82.65 E-value=7 Score=39.10 Aligned_cols=56 Identities=23% Similarity=0.205 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccCCc
Q 014357 66 RVNMLKSDIASLTE-------KNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPF 121 (426)
Q Consensus 66 r~~~l~~~~~~~~~-------~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~~~ 121 (426)
.+..+++++.+++. ...+++.++..++..+..|++....|++++.++.+.++.|-.
T Consensus 81 ~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~i 143 (334)
T TIGR00998 81 ALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLI 143 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCc
Confidence 34444555544444 444555566666677777888888888888888888888765
No 68
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=82.62 E-value=3.5 Score=38.82 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHH
Q 014357 60 SCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQA 105 (426)
Q Consensus 60 ~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a 105 (426)
+|=|++..+.++..+..|.++.+++++++.+|++++..+..|+.+.
T Consensus 57 WsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~ 102 (188)
T PF03962_consen 57 WSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES 102 (188)
T ss_pred EecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 7899999999999999999999999999999999999998877665
No 69
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=82.61 E-value=3.9 Score=31.03 Aligned_cols=34 Identities=12% Similarity=0.344 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
|+..|.+++..++-..+.+++|..+|++.+..-+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555544443
No 70
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=82.41 E-value=6.7 Score=32.02 Aligned_cols=35 Identities=11% Similarity=0.285 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
.+.++.++.|+..+.+|-.++-++++++.+.++.-
T Consensus 32 ~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k 66 (90)
T PF06103_consen 32 NKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEK 66 (90)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777777777777666655443
No 71
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.20 E-value=6.1 Score=39.23 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
.-++.++.||.+|-.+..++.+++.+++++++..++.-.+.++++..+.+.+
T Consensus 45 ~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 45 KEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555566666666666666666665555543
No 72
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=81.98 E-value=5.9 Score=31.05 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
.-+...++.++.++++++++|+++..+|+++++....-.+
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~ 55 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPD 55 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 3456789999999999999999999999999888754333
No 73
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.85 E-value=6 Score=31.44 Aligned_cols=43 Identities=23% Similarity=0.397 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
.|-++.|+-|+..|++||..|..++.+++..-.-.++...+..
T Consensus 17 vdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk 59 (79)
T COG3074 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLK 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888888888888777666554444444443
No 74
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=81.83 E-value=2.6 Score=36.01 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
.-+...|++|+.+++++|++|+.+-.+|++++...+.+.+-.+
T Consensus 26 ~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiE 68 (105)
T PRK00888 26 ILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIE 68 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 3467899999999999999999999999999999987754333
No 75
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=81.71 E-value=3.9 Score=35.76 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGK 102 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~ 102 (426)
---++.|.+++.+-+.+|.+|+.||+||+.-=|..+-.+
T Consensus 66 q~ei~~Le~kIs~q~~e~~dlkqeV~dLss~eRIldiAk 104 (120)
T COG4839 66 QGEITDLESKISEQKTENDDLKQEVKDLSSPERILDIAK 104 (120)
T ss_pred HhHHHHHHHHHHHHHhhhhhHHHHHHHhccHHHHHHHHH
Confidence 456889999999999999999999999997755554433
No 76
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=81.38 E-value=3.6 Score=30.61 Aligned_cols=29 Identities=28% Similarity=0.530 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTA 93 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~ 93 (426)
+++..|+.++..|+++|+.|+.++..|+.
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677888888888888888888888764
No 77
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.26 E-value=16 Score=32.57 Aligned_cols=19 Identities=32% Similarity=0.672 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHhhc
Q 014357 16 IAIAIVIGVLVGCVFAFLF 34 (426)
Q Consensus 16 ~~~~~~vgv~lg~~~a~~~ 34 (426)
++||.+|||+||++++=+-
T Consensus 11 a~igLvvGi~IG~li~Rlt 29 (138)
T COG3105 11 ALIGLVVGIIIGALIARLT 29 (138)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 5788899999999998776
No 78
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=81.18 E-value=7.2 Score=40.57 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccCCc
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPF 121 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~~~ 121 (426)
.+...+.++.+.+.+..++..+.+.+++.++.|+...+.|++++.++...++.|-.
T Consensus 100 ~l~~A~a~l~~a~~~~~~~~~~~~~~~a~l~~a~a~l~~a~~~~~R~~~L~~~g~i 155 (390)
T PRK15136 100 AFEKAKTALANSVRQTHQLMINSKQYQANIELQKTALAQAQSDLNRRVPLGNANLI 155 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 34555566666655556666666777888888888899999999999888887744
No 79
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=80.93 E-value=7.1 Score=36.42 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=31.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 77 LTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 77 ~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
.+++++.+.+|+.+|+++|..+|+..+.-.||...+.++|
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567777888888888888888888888888888887766
No 80
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=80.87 E-value=7.3 Score=32.17 Aligned_cols=48 Identities=27% Similarity=0.489 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 59 SSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 59 ~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
..|.|...+..|.+|+.+|+.|-+.+...++.++.-.+.|...-..|-
T Consensus 18 aGCAs~~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN 65 (85)
T PRK09973 18 SGCVNEQKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRAN 65 (85)
T ss_pred HHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556688888999999998888888888888887766655544444
No 81
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=80.83 E-value=1.2 Score=41.30 Aligned_cols=40 Identities=28% Similarity=0.449 Sum_probs=15.5
Q ss_pred HHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 64 PERVNMLKSDI---ASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 64 ~~r~~~l~~~~---~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
.||-.+|++|| ..|.++++-||.|+|||++.|..-++-++
T Consensus 13 IERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl~V~ek~~~ 55 (166)
T PF04880_consen 13 IERNALLESELDEKENLREEVQRLKDELRDLKQELIVQEKLRK 55 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHCH----------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 79999999999 45778889999999999999855554433
No 82
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=80.63 E-value=5.3 Score=43.45 Aligned_cols=54 Identities=26% Similarity=0.299 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccC
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVG 119 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~ 119 (426)
|-+.|.+|++++..|.+|||+.+-.-+..|-..+-..+|||.|+..|.++-.+-
T Consensus 101 krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pk 154 (907)
T KOG2264|consen 101 KRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPK 154 (907)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCc
Confidence 345555555555555555555554444444445555666776666666665544
No 83
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=79.95 E-value=4.3 Score=35.84 Aligned_cols=15 Identities=40% Similarity=0.924 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhc
Q 014357 20 IVIGVLVGCVFAFLF 34 (426)
Q Consensus 20 ~~vgv~lg~~~a~~~ 34 (426)
++||+++|++++|+.
T Consensus 2 ~~i~lvvG~iiG~~~ 16 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLI 16 (128)
T ss_pred hHHHHHHHHHHHHHH
Confidence 689999999999976
No 84
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=79.87 E-value=6.5 Score=31.23 Aligned_cols=33 Identities=21% Similarity=0.454 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTAKLRLAEQGK 102 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~ 102 (426)
|++++..++.|++||-+|+++..+.+..+....
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999987766544
No 85
>PHA01750 hypothetical protein
Probab=79.74 E-value=3.4 Score=32.38 Aligned_cols=30 Identities=37% Similarity=0.560 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
..+|+.|+..+..+.++|..||.|+..|++
T Consensus 44 LdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 44 LDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 455666666666666666666666666654
No 86
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.50 E-value=5.5 Score=36.42 Aligned_cols=40 Identities=38% Similarity=0.504 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 62 ESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 62 ~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
.|++-+..|..++..|+++..+|++++++|++.|+...+-
T Consensus 69 ~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 69 PSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3567788888889999999999999988888888766543
No 87
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=79.28 E-value=5.6 Score=40.45 Aligned_cols=53 Identities=19% Similarity=0.267 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Q 014357 63 SPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQ 115 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~ 115 (426)
.++.++.|+.+|++++.+.+++++++.+|+++++..++.......+...+.++
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~e 259 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAE 259 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888999999988888888666666666666655555544444444443333
No 88
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.30 E-value=5.8 Score=40.29 Aligned_cols=56 Identities=25% Similarity=0.408 Sum_probs=32.4
Q ss_pred cCCcccccccccCCcccCCCCCchhHHHHHHHhcCCCeEEEEEcCcchHHHHHHHHHHHHHcCC--CcEEEEEeCHH
Q 014357 118 VGPFGTVKALRTNPTVVPDESVNPRLAKILEEVAVGKELIVALANSNVKSMLEVWSTNIKRVGI--TNYLVVALDDQ 192 (426)
Q Consensus 118 ~~~~~~~~~~~t~p~~~p~~~~~p~L~~lL~~~A~d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi--~n~lVvAlD~~ 192 (426)
.|||||+.++|=- -.|... -++.+| |+||+..+.....=.+++|+ .+|.++.+...
T Consensus 147 dG~fGTINGlRLG--rl~~~~--V~W~EI---------------NAA~Gq~~LLL~~la~~l~~~f~~y~l~P~Gs~ 204 (314)
T PF04111_consen 147 DGPFGTINGLRLG--RLPNVP--VEWNEI---------------NAAWGQTALLLQTLAKKLNFKFQRYRLVPMGSF 204 (314)
T ss_dssp ETTEEEETTEEE----BTTB-----HHHH---------------HHHHHHHHHHHHHHHHHCT---SSEEEE--GGG
T ss_pred cCCeeeECCeeec--cCCCCC--CChHHH---------------HHHHHHHHHHHHHHHHHhCCCcccceeEecCCC
Confidence 5999999999852 122211 134443 67777666655555667886 57888887553
No 89
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=78.02 E-value=9.6 Score=32.05 Aligned_cols=43 Identities=16% Similarity=0.310 Sum_probs=29.2
Q ss_pred CCCCCCHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 58 GSSCESPE----RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 58 ~~~~~~~~----r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
+..|.+-. .-+..-.|+...-+-..+|.|.|..|+++|.-|..
T Consensus 48 s~~c~~k~~~~~~~~di~~eV~kTh~aIq~LdKtIS~LEMELAaARa 94 (95)
T PF13334_consen 48 SEDCDPKKLKESDQRDIMGEVSKTHEAIQSLDKTISSLEMELAAARA 94 (95)
T ss_pred cccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56775433 22333345555566677999999999999988764
No 90
>smart00340 HALZ homeobox associated leucin zipper.
Probab=77.72 E-value=4.1 Score=29.17 Aligned_cols=26 Identities=50% Similarity=0.615 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTA 93 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~ 93 (426)
..||.=..+|++||.-|+||+.||+.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788889999999999999999975
No 91
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=77.59 E-value=14 Score=32.05 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
.+-+..||.+++.|.|||++|+-|-.-|+++|...++
T Consensus 21 ~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 21 LKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5678899999999999999999999999999997654
No 92
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=76.90 E-value=15 Score=31.49 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQL 91 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l 91 (426)
.+.+.+.+.+++-++.|.+|+.++.+-
T Consensus 32 a~n~~q~~tI~qq~~~~~~L~~~~~~~ 58 (110)
T PF10828_consen 32 AENKAQAQTIQQQEDANQELKAQLQQN 58 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777777766543
No 93
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=76.39 E-value=11 Score=31.27 Aligned_cols=42 Identities=26% Similarity=0.412 Sum_probs=30.3
Q ss_pred HHHHHHHH--------HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHH
Q 014357 64 PERVNMLK--------SDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQA 105 (426)
Q Consensus 64 ~~r~~~l~--------~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a 105 (426)
...|++|| .++..|+.+|.+|..++.+|+.+|......+.+.
T Consensus 33 E~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 33 ETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777 5677777788888888888888877776665543
No 94
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.15 E-value=9.8 Score=36.42 Aligned_cols=41 Identities=29% Similarity=0.291 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
+++.+++++..|+++|++|++|+.+++++++.+++..+..+
T Consensus 126 ~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 126 KVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555777777777777777777777665544444
No 95
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=75.75 E-value=7.4 Score=32.00 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
++.-+..++...++|.+++++++++|..+.+.+|
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778999999999999999999998888777
No 96
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=75.35 E-value=6.5 Score=36.17 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=8.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 014357 73 DIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
|...|++++++|++++.+|+.++
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~ 127 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKEL 127 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 97
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=75.21 E-value=9 Score=36.06 Aligned_cols=40 Identities=30% Similarity=0.428 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQA 105 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a 105 (426)
....|+.++..|++++.+|++++.+|+.+....++...+.
T Consensus 121 ~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 121 GKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999999998888765544
No 98
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=74.97 E-value=7.2 Score=33.29 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
.+|+..+...++.++++...|++++.+++.+|+.+
T Consensus 73 ~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 73 KEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777788888888888888888888888777654
No 99
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=74.56 E-value=5 Score=40.19 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
..|..|+.-|+++|.+||.|+.+|...+|-..|---
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999999999999988887766443
No 100
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=74.41 E-value=9.4 Score=29.00 Aligned_cols=32 Identities=16% Similarity=0.403 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
..++..+++.+..++++|.++++++.++.+-+
T Consensus 6 En~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 6 ENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888999999999999999999999887
No 101
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=74.05 E-value=4.4 Score=42.69 Aligned_cols=29 Identities=34% Similarity=0.394 Sum_probs=21.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
++++.|.++..+|++||+||+.||.-+..
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~laa~~~ 53 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKLAAKPA 53 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45666666677888999999988655443
No 102
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=73.92 E-value=26 Score=32.05 Aligned_cols=43 Identities=9% Similarity=0.105 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
.+|-+....+|...++.++|+.+-..+.+++|+.|++...+..
T Consensus 34 eeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii 76 (154)
T PRK06568 34 DAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMI 76 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888888888888888888776555433
No 103
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=73.52 E-value=1.6 Score=37.85 Aligned_cols=46 Identities=22% Similarity=0.424 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQV 109 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~ 109 (426)
-+=+..|..++..|.++|++|+.|+++|..+|..++......++.+
T Consensus 24 D~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 24 DDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 4456788889999999999999999999999888876665555443
No 104
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=73.41 E-value=13 Score=34.28 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=22.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 75 ASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 75 ~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
..+..||..|+.|+.+|++++...++....-.++...+.+.|
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555444444
No 105
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=73.32 E-value=66 Score=31.86 Aligned_cols=69 Identities=22% Similarity=0.385 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeC-------HHHHHHHHHCCCCEEEeCCCCCcccccccCcchhhHhhHHHHHHHHHhc
Q 014357 167 SMLEVWSTNIKRVGITNYLVVALD-------DQTAEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGLKFRVLREFLQL 239 (426)
Q Consensus 167 d~~~Nwl~slkr~Gi~n~lVvAlD-------~~a~~~c~~~g~~c~~~~~~~g~d~~~gs~~f~~m~~~K~~~l~~vL~l 239 (426)
..+.+....+++.| ..+++++.| +....+++..+++.+.... +.|. .......+......
T Consensus 87 Tt~akLA~~l~~~g-~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~--~~dp----------~~~~~~~l~~~~~~ 153 (272)
T TIGR00064 87 TTIAKLANKLKKQG-KSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKE--GADP----------AAVAFDAIQKAKAR 153 (272)
T ss_pred HHHHHHHHHHHhcC-CEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCC--CCCH----------HHHHHHHHHHHHHC
Confidence 35555555665555 478888999 4555677888887764322 1110 11122334555678
Q ss_pred CcceEEecc
Q 014357 240 DYSVLLSDI 248 (426)
Q Consensus 240 Gy~VL~sDv 248 (426)
||++++.|+
T Consensus 154 ~~D~ViIDT 162 (272)
T TIGR00064 154 NIDVVLIDT 162 (272)
T ss_pred CCCEEEEeC
Confidence 999998886
No 106
>PRK09343 prefoldin subunit beta; Provisional
Probab=73.02 E-value=9.6 Score=33.27 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
.+|+..++.+++.++++...|++++.+++.+|+.+-++
T Consensus 77 ~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 77 KERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888888888888888888888888888888777654
No 107
>PRK11677 hypothetical protein; Provisional
Probab=72.96 E-value=10 Score=33.89 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhhc
Q 014357 18 IAIVIGVLVGCVFAFLF 34 (426)
Q Consensus 18 ~~~~vgv~lg~~~a~~~ 34 (426)
+.++||+++|++++|+.
T Consensus 4 ~~a~i~livG~iiG~~~ 20 (134)
T PRK11677 4 EYALIGLVVGIIIGAVA 20 (134)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56779999999999987
No 108
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=72.77 E-value=19 Score=32.82 Aligned_cols=42 Identities=33% Similarity=0.402 Sum_probs=28.2
Q ss_pred CCCCCHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 59 SSCESPER-VNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 59 ~~~~~~~r-~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
....+.|. +..+..++..++++.+++++++++|+.+++.+=|
T Consensus 39 ~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (151)
T PF14584_consen 39 KDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQ 81 (151)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44445544 5677777777777777777777777777665443
No 109
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=72.36 E-value=24 Score=30.05 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhhc
Q 014357 18 IAIVIGVLVGCVFAFLF 34 (426)
Q Consensus 18 ~~~~vgv~lg~~~a~~~ 34 (426)
++.++|++.|.+++.+=
T Consensus 12 i~a~~~~~~~~~~~~l~ 28 (106)
T PF10805_consen 12 IWAVFGIAGGIFWLWLR 28 (106)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455666666666543
No 110
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=72.12 E-value=9.6 Score=32.16 Aligned_cols=35 Identities=26% Similarity=0.497 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
.+|+..|+.+++.++++..++.+|+++++.+|+..
T Consensus 69 e~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 69 KERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999999999999888754
No 111
>PRK11239 hypothetical protein; Provisional
Probab=71.84 E-value=7.4 Score=37.39 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 63 SPERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
+++|...|+.++.+|+.|.++|+.++.+|.+.+
T Consensus 181 ~~~~~~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 181 SNAVDGDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367788899999999999999999999987754
No 112
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=71.75 E-value=22 Score=38.05 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTA 93 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~ 93 (426)
.+++.++.++..|.++|..|++|-+.|++
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888877777765
No 113
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=71.60 E-value=4.7 Score=41.02 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 61 CESPERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 61 ~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
..|.+....|+.|=.+|++||.+|+++|..|++.
T Consensus 28 ~~~~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 28 GVSIDENFALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred ccchhhhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555433
No 114
>PRK09039 hypothetical protein; Validated
Probab=71.41 E-value=10 Score=38.92 Aligned_cols=43 Identities=26% Similarity=0.394 Sum_probs=32.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 74 IASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 74 ~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
+..|..+.+.|++|+..|++.|+.+|+...+++.|+..|+...
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888888888887777887776666543
No 115
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=71.09 E-value=28 Score=32.30 Aligned_cols=66 Identities=15% Similarity=0.336 Sum_probs=40.6
Q ss_pred cccchhhHHHHHHHHHHHHHHhhcCC---CcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHHHHHHHHhHHHHHH
Q 014357 11 IRGSRIAIAIVIGVLVGCVFAFLFPH---GFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQ 87 (426)
Q Consensus 11 ~~~~~~~~~~~vgv~lg~~~a~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~l~~~ 87 (426)
+...-+..+|...|+++.+.-|.+|. +++ .+|-+....++...++.+.+..+.
T Consensus 25 ~~~t~~~~~inflil~~iL~~f~~~~~v~~~L------------------------~~R~~~I~~~l~~Ae~~~~eA~~~ 80 (184)
T PRK13455 25 LSNTDFVVTLAFLLFIGILVYFKVPGMIGGML------------------------DKRAEGIRSELEEARALREEAQTL 80 (184)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhccHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777888887775532 122 456666666666666666666666
Q ss_pred HHHHHHHHHHHhh
Q 014357 88 VRQLTAKLRLAEQ 100 (426)
Q Consensus 88 ~~~l~~kl~~a~q 100 (426)
..+.+++|..|++
T Consensus 81 l~e~e~~L~~A~~ 93 (184)
T PRK13455 81 LASYERKQREVQE 93 (184)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665553
No 116
>PRK14127 cell division protein GpsB; Provisional
Probab=71.02 E-value=7.5 Score=33.57 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=22.5
Q ss_pred CHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 63 SPERVNM----LKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 63 ~~~r~~~----l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
+++-|.. .-.++..+.+||++|++|+..|+++|...+.
T Consensus 24 d~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 24 DQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455543 3344456666777777777777666655544
No 117
>PRK02793 phi X174 lysis protein; Provisional
Probab=71.00 E-value=35 Score=27.11 Aligned_cols=53 Identities=13% Similarity=0.041 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 61 CESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 61 ~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
++-.+|+..|...++=.+...++|-+.|-+.+..++..+..-..-.+++..++
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33467888888888777777777666666655555444433333333444433
No 118
>COG1422 Predicted membrane protein [Function unknown]
Probab=70.83 E-value=27 Score=33.37 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQ 87 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~ 87 (426)
-||.+.++.+.++..||-.|.+++
T Consensus 71 ~ekm~~~qk~m~efq~e~~eA~~~ 94 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFREAQES 94 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777777766666666553
No 119
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=70.75 E-value=11 Score=40.21 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 63 SPERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
--.|++.|.+|=+.|.+||+.|+++-..+..++
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 356666677777777777777766444443333
No 120
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=70.60 E-value=15 Score=35.85 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
.+++..|+.|+..|+..|+.|++++.++++++...++..++.+
T Consensus 55 ~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 55 LAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777787787777777777777777766665
No 121
>PRK02119 hypothetical protein; Provisional
Probab=70.58 E-value=23 Score=28.24 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 60 SCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 60 ~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
.|.-.+|+..|...++-.+...++|-+.|-+....++..+.
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ 44 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQV 44 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456788888888877776666666666555555444443
No 122
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=70.55 E-value=19 Score=34.81 Aligned_cols=82 Identities=15% Similarity=0.264 Sum_probs=48.1
Q ss_pred cccccccccCCcccCCCCCch--hHHHHHHHhcCCCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEE-EEeCHHHHHH-
Q 014357 121 FGTVKALRTNPTVVPDESVNP--RLAKILEEVAVGKELIVALANSNVKSMLEVWSTNIKRVGITNYLV-VALDDQTAEY- 196 (426)
Q Consensus 121 ~~~~~~~~t~p~~~p~~~~~p--~L~~lL~~~A~d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lV-vAlD~~a~~~- 196 (426)
++.++++.|||++.-.+..++ .++++++.+..++.|.+-+....+.+|++. ...+.+++ +|++| +-...+-++.
T Consensus 19 ~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~v~~Qv~~~d~e~mi~e-a~~l~~~~-~ni~IKIP~T~~Gl~A~ 96 (220)
T PRK12653 19 IFPLAGVTTNPSIIAAGKKPLEVVLPQLHEAMGGQGRLFAQVMATTAEGMVND-ARKLRSII-ADIVVKVPVTAEGLAAI 96 (220)
T ss_pred CCCccEEeCCHHHHHhcCCCHHHHHHHHHHHhCCCCcEEEEEecCCHHHHHHH-HHHHHHhC-CCEEEEeCCCHHHHHHH
Confidence 455689999999998775542 233443333334567766666666666664 33344444 56655 6666444444
Q ss_pred --HHHCCCCE
Q 014357 197 --CKTNDIPV 204 (426)
Q Consensus 197 --c~~~g~~c 204 (426)
+.+.|++|
T Consensus 97 ~~L~~~GI~v 106 (220)
T PRK12653 97 KMLKAEGIPT 106 (220)
T ss_pred HHHHHcCCCe
Confidence 44567764
No 123
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.50 E-value=13 Score=37.70 Aligned_cols=54 Identities=19% Similarity=0.359 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Q 014357 62 ESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQ 115 (426)
Q Consensus 62 ~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~ 115 (426)
...+-+..+..++..+++|..+|.+++++|+..-...++...+.+++...+.++
T Consensus 40 ~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 40 DSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp --HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777777777777777777766666666666666555555433
No 124
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=70.36 E-value=3.4 Score=34.18 Aligned_cols=16 Identities=31% Similarity=0.621 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHH
Q 014357 16 IAIAIVIGVLVGCVFA 31 (426)
Q Consensus 16 ~~~~~~vgv~lg~~~a 31 (426)
++||+.||++||++++
T Consensus 77 vgiAagvG~llG~Ll~ 92 (94)
T PF05957_consen 77 VGIAAGVGFLLGLLLR 92 (94)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5677777777777764
No 125
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=69.81 E-value=7.2 Score=33.57 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=29.1
Q ss_pred HHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHhhhhhH
Q 014357 69 MLKSDI-ASLTEKNAELQKQVRQLTAKLRLAEQGKDQ 104 (426)
Q Consensus 69 ~l~~~~-~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~ 104 (426)
..|+.| =..+||-+-||.|++||.+|++..|+...-
T Consensus 56 LVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~l 92 (123)
T KOG4797|consen 56 LVKTHLMFAVREEVEVLKEQIRELEERNSALERENSL 92 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 467899999999999999999999987653
No 126
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=69.76 E-value=14 Score=30.57 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
-.++.++++..+|.+||..|+-|+..|+.=
T Consensus 42 ~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~ 71 (97)
T PF04999_consen 42 YELQQLEKEIDQLQEENERLRLEIATLSSP 71 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 447888888888888888888888777654
No 127
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=69.40 E-value=13 Score=38.09 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccCCc
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPF 121 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~~~ 121 (426)
+.+.+++++.+++.+.+.++.|+..+++++..+++....+++++....+.++.|--
T Consensus 138 ~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~i 193 (423)
T TIGR01843 138 RKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLV 193 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34556677777778888888888888888888888888888887777666666544
No 128
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=69.39 E-value=13 Score=35.28 Aligned_cols=52 Identities=29% Similarity=0.495 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 65 ERVNMLKSDIASLTE-------KNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~-------~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
+-.+.+.+.+++|+. +.+...++++.|++||..|++-..+|.+.|..|.+++
T Consensus 116 Ee~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~ 174 (205)
T KOG1003|consen 116 EDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKER 174 (205)
T ss_pred HHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccH
Confidence 445566666666654 4567789999999999999999999999988887654
No 129
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=69.30 E-value=16 Score=30.69 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
+++-.|-.+..++..+-++|+.+-|+++.++..+
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~ 62 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKL 62 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4444444444444444444444444444444333
No 130
>PRK00736 hypothetical protein; Provisional
Probab=68.84 E-value=39 Score=26.58 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
.+|+..|...++-.+...++|-+.|-+-...++..+
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~ 39 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMR 39 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888777666666666665555554444444
No 131
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=68.55 E-value=24 Score=28.13 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGK 102 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~ 102 (426)
.||+.+-..+..|..|+++|+++..+|.+.....++..
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en 48 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELKEENEELKEEN 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45555555555555555555555555554444443333
No 132
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=68.50 E-value=45 Score=30.62 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 16 IAIAIVIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 16 ~~~~~~vgv~lg~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
+..+|...|+++++.-|+||. ... -. .+|-+....++...++..++..+...+..++|
T Consensus 22 ~~~~i~Flil~~lL~~~l~kp---------i~~-------~l------~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L 79 (175)
T PRK14472 22 FWTAVTFVIVLLILKKIAWGP---------ILS-------AL------EEREKGIQSSIDRAHSAKDEAEAILRKNRELL 79 (175)
T ss_pred HHHHHHHHHHHHHHHHHhHHH---------HHH-------HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888999998888832 111 11 35555555666555555555555555555555
Q ss_pred HHHhh
Q 014357 96 RLAEQ 100 (426)
Q Consensus 96 ~~a~q 100 (426)
..|++
T Consensus 80 ~~a~~ 84 (175)
T PRK14472 80 AKADA 84 (175)
T ss_pred HHHHH
Confidence 55543
No 133
>PLN02659 Probable galacturonosyltransferase
Probab=68.49 E-value=17 Score=39.42 Aligned_cols=175 Identities=15% Similarity=0.181 Sum_probs=85.7
Q ss_pred cCcchhh-HhhHHHHHHHHHhcCc-ceEEecccEEeecCcccccccCC--cE-eeccCCCCCC-----cccC-CCCCCCC
Q 014357 219 KGGNHAV-SGLKFRVLREFLQLDY-SVLLSDIDIVFLQNPFEYLYRDS--DV-ESMTDGHNNM-----TAYG-YNDVFDE 287 (426)
Q Consensus 219 s~~f~~m-~~~K~~~l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~da--Di-~~ssD~~~~~-----ta~g-~~dv~dd 287 (426)
.+.|..| +..|+.+ -+++. .+ .||+.|.|||-.+|=-+.+.-|- .+ .+..|+.... ..+. |- -+..
T Consensus 323 ~p~ylS~~nY~RL~I-PeLLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL-~~s~ 399 (534)
T PLN02659 323 SPKYNSVMNHIRIHL-PELFP-SLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYL-NFSH 399 (534)
T ss_pred CccceeHHHHHHHHH-HHHhh-hcCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhh-cccc
Confidence 3445443 4566544 34444 24 69999999999998666654321 11 1223321000 0000 00 0111
Q ss_pred CccchhhhcccccceecceeEEEEe-----cChhHHHHHHHHHHHh--CCCCCCchHHHHH--HhcCCCCCCCCCccceE
Q 014357 288 PAMGWARYAHTMRIWVFNSGFFYIR-----PTIPSIELLDRVADRL--GKEKAWDQAVFNE--ELFFPSHPGYYGLHASK 358 (426)
Q Consensus 288 P~~~w~r~a~~~~~~~~NtGf~y~R-----~T~~s~~fl~~w~~rl--~~~~~~DQ~afN~--ll~~ps~~~~~gl~v~v 358 (426)
|... ..+... .-.+|+|++++- -..-+.+++ .|.... .+-..|||+++|. +++ .| .+
T Consensus 400 p~i~-~yFn~~--~cYfNsGVlLINLk~WRe~nITek~l-~~l~~n~~~~l~l~DQdaLp~~LivF-------~g---~v 465 (534)
T PLN02659 400 PLIA-KNFDPN--ECAWAYGMNIFDLEAWRKTNISSTYH-HWLEENLKSDLSLWQLGTLPPGLIAF-------HG---HV 465 (534)
T ss_pred hhhh-hccCcc--ccceecceeEeeHHHHHhcChHHHHH-HHHHhcccccccccccccchHHHHHh-------cC---CE
Confidence 1100 000000 115789999874 344444433 343322 2345789999962 222 12 14
Q ss_pred Eecccc--ccCCCceehhhcchhhhccCCCeEEEEeCC-----ccChHHHHHHhhhhhccCccc
Q 014357 359 RVMDFY--LFMNSKVLFKTVRKDANLKKLKPVVVHVNY-----HPDKFPRMLAIVEFYVNGKQD 415 (426)
Q Consensus 359 ~~Lp~~--~F~nG~~~F~~~R~~~~~~~~~P~iVH~N~-----~~~K~~Rlre~~~wyl~~~~~ 415 (426)
..||.. .+..|+.+-. . .+ ....|.++|.|. ++.-+++.|+.-.-|++.+..
T Consensus 466 ~~LD~rWN~~gLg~~~~~--~--~~-~i~~paIIHYnG~~KPW~~~~~~~yr~~W~kYl~~s~~ 524 (534)
T PLN02659 466 HVIDPFWHMLGLGYQENT--S--LA-DAESAGVVHFNGRAKPWLDIAFPQLRPLWAKYIDSSDK 524 (534)
T ss_pred EECChhheecCCcccccc--c--cc-ccCCcEEEEECCCCCccccccCCcchhHHHHHhccCCH
Confidence 556542 2333332211 1 11 236899999885 455566777777778877753
No 134
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=68.46 E-value=16 Score=37.09 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQ 115 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~ 115 (426)
+++..++.++.+.+++.++|++|+.++++++...+..+.+.++++..+...
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888888888888888888888877777777777776666543
No 135
>PRK00295 hypothetical protein; Provisional
Probab=68.29 E-value=41 Score=26.40 Aligned_cols=50 Identities=16% Similarity=0.047 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
.+|+..|...++-.+...++|-+.|-+....++..+..-..-.+++..+.
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36777777777766666666666665555555444433333334444443
No 136
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=68.15 E-value=1.6e+02 Score=31.46 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=55.7
Q ss_pred ccCCcccccccccCCcccCCCCCchhHHHHHHHhcCCCeEEEEEcCcchHHHHHHHHHHHHHcCC--CcEEEEEeCHHHH
Q 014357 117 KVGPFGTVKALRTNPTVVPDESVNPRLAKILEEVAVGKELIVALANSNVKSMLEVWSTNIKRVGI--TNYLVVALDDQTA 194 (426)
Q Consensus 117 ~~~~~~~~~~~~t~p~~~p~~~~~p~L~~lL~~~A~d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi--~n~lVvAlD~~a~ 194 (426)
-.|+|||+.+.|-. -.|.-. -++.++ |.+|......--.-.+++|+ ..|-+++|-..+|
T Consensus 279 ~~G~fgtIN~FRLG--~lp~~p--Vew~EI---------------NAA~GQ~vLLL~~l~~kig~~~~~y~lvp~GshSy 339 (447)
T KOG2751|consen 279 HDGEFGTINNFRLG--RLPSVP--VEWDEI---------------NAAWGQTVLLLHTLANKIGLNFVRYRLVPMGSHSY 339 (447)
T ss_pred ecccccccccceec--cccCCC--cCHHHH---------------HHHhhhHHHHHHHHHHhcCcccceeeeecccchhH
Confidence 37999999997742 122111 123333 34443333222223456787 4689999988888
Q ss_pred HHHHHCCCCEEEeCC-CCCcccccccCcchhhHhhHHHHHHHHHh
Q 014357 195 EYCKTNDIPVYQRDP-DEGIDSIARKGGNHAVSGLKFRVLREFLQ 238 (426)
Q Consensus 195 ~~c~~~g~~c~~~~~-~~g~d~~~gs~~f~~m~~~K~~~l~~vL~ 238 (426)
=.....++|.++-.- ..|....| +..|.+-|.+=..++.++.+
T Consensus 340 I~~~~~~~~~el~l~~sgg~~~f~-~tkfD~amvafLd~L~qf~~ 383 (447)
T KOG2751|consen 340 IKKRMVNLPYELPLFQSGGLKFFW-STKFDKAMVAFLDCLKQFAD 383 (447)
T ss_pred HHHhccCCCccchhhcCCCceeee-ccccCHHHHHHHHHHHHHHH
Confidence 666666767665221 22344444 34455544445556665543
No 137
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=67.78 E-value=6.6 Score=42.40 Aligned_cols=63 Identities=25% Similarity=0.330 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--hhhhHHHHH---------HHHhhcccccCCccccccc
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE--QGKDQAQKQ---------VMVLGEQHKVGPFGTVKAL 127 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~--qg~~~a~~~---------~~~~~~~~~~~~~~~~~~~ 127 (426)
.|++.|.+|=.+|+.||+.||.|+-+|...-...+ +++++.+|. +|+..----.|||..-..+
T Consensus 309 ~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvpsp~~~~qKk~Rkvvaimv~maFi~f~~~~p~ni~nnl 382 (655)
T KOG4343|consen 309 ARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPSPKGRNQKKKRKVVAIMVVMAFIIFNYGSPMNILNNL 382 (655)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCCCcccccccchhhhhHHHHHHHHHHhccCcccccCCc
Confidence 46677777777777777777777777765433333 444444433 3444444445588555555
No 138
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.75 E-value=31 Score=27.52 Aligned_cols=51 Identities=24% Similarity=0.199 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 63 SPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
|.|=...|...+.+.-+...=|+-+|.||.||-+...|....|+.+-.+|.
T Consensus 2 SlEv~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 2 SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 345556777888888888888888888888887777777776666655543
No 139
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=67.61 E-value=19 Score=34.50 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGE 114 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~ 114 (426)
..-|..||.++..++.+-++.++++++..+....|-+...+.|+++..|-.
T Consensus 31 Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLq 81 (207)
T PF05546_consen 31 YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQ 81 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667888888888888888888888888888888888888888888766543
No 140
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=67.47 E-value=21 Score=37.90 Aligned_cols=59 Identities=20% Similarity=0.322 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------------------------------HHHHHhhhhhHHHHHHHHh
Q 014357 63 SPERVNMLKSDIASLTEKNAELQKQVRQLTA------------------------------KLRLAEQGKDQAQKQVMVL 112 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~------------------------------kl~~a~qg~~~a~~~~~~~ 112 (426)
++++++.|++||..|.++-.||++++..-.. .++.-.|....++-++..|
T Consensus 23 ~a~~i~~L~~ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~~~~~qqiAn~~lKv~~l 102 (514)
T PF11336_consen 23 TADQIKALQAQLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSDAQAGLTNDDATEMRQQIANAQLKVESL 102 (514)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcccccccChHHHHHHHHHHHhhhhhHHHH
Confidence 3788999999999999999999999754322 2222334444556668899
Q ss_pred hcccccCCc
Q 014357 113 GEQHKVGPF 121 (426)
Q Consensus 113 ~~~~~~~~~ 121 (426)
.+.-..|||
T Consensus 103 ~da~~t~~~ 111 (514)
T PF11336_consen 103 EDAAETGGF 111 (514)
T ss_pred hhHHhcCCc
Confidence 999999998
No 141
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=67.35 E-value=25 Score=27.62 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMV 111 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~ 111 (426)
.+|+..|...++-.++..++|-+.|-+.+.+++..+..-..-.+++..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666555555555555554444444433333
No 142
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=67.27 E-value=15 Score=28.12 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
+++..|+++...|.++++.|++++..|...
T Consensus 33 ~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 33 EKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555555555555555543
No 143
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=67.24 E-value=26 Score=32.24 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTE-----KNAELQKQVRQLTAKL 95 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~-----~~~~l~~~~~~l~~kl 95 (426)
-+.++.+|+|+.+.+- |-|.|...++.|+.|+
T Consensus 50 ~~ei~dmKqelnavs~qD~fAkwaRlnRKi~kl~~el 86 (175)
T KOG4253|consen 50 VAEIQDMKQELNAVSMQDNFAKWARLNRKINKLDKEL 86 (175)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777754432 3345555566666555
No 144
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=67.14 E-value=15 Score=29.21 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
-.+.|+..+..-+.+|+.|..||++|+.++...
T Consensus 29 sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~L 61 (70)
T PF04899_consen 29 SYADLQHMFEQTSQENAALSEQVNNLSQQVQRL 61 (70)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888998888888886644
No 145
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.76 E-value=17 Score=26.42 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
..|++...+|..+++.|++|...|++.+...
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999886543
No 146
>PHA00728 hypothetical protein
Probab=66.59 E-value=7 Score=34.32 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 71 KSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 71 ~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
..++.+|.+||+||+|.+.+|.+-+.
T Consensus 4 ~teveql~keneelkkkla~leal~n 29 (151)
T PHA00728 4 LTEVEQLKKENEELKKKLAELEALMN 29 (151)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHc
Confidence 35889999999999999999987654
No 147
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=66.52 E-value=26 Score=30.12 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQ 108 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~ 108 (426)
.|+..|..++..++.-+.+|.+|-.+|+.-++..++......+-
T Consensus 16 n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr 59 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQR 59 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555554444444433
No 148
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=65.98 E-value=20 Score=28.24 Aligned_cols=48 Identities=13% Similarity=0.192 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQ 115 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~ 115 (426)
+.++.++..++.+-.++.+.++.|+......|+...+..+++..+.+.
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666666666666655543
No 149
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=65.90 E-value=33 Score=30.93 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
.+|-+....++...++.+.+..+...+..++|..|++
T Consensus 32 ~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ 68 (159)
T PRK09173 32 DARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEK 68 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666666666666666653
No 150
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=65.84 E-value=66 Score=28.97 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 16 IAIAIVIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 16 ~~~~~~vgv~lg~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
+...|...|+++++.-|+||. ... -. .+|-+....++...++.+.+..+...+.+++|
T Consensus 9 ~~~~inF~il~~iL~~f~~kp---------i~~-------~l------~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l 66 (159)
T PRK13461 9 IATIINFIILLLILKHFFFDK---------IKA-------VI------DSRQSEIDNKIEKADEDQKKARELKLKNEREL 66 (159)
T ss_pred HHHHHHHHHHHHHHHHHhHHH---------HHH-------HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677888888888831 111 12 46666677777777666666666666666666
Q ss_pred HHHhhh
Q 014357 96 RLAEQG 101 (426)
Q Consensus 96 ~~a~qg 101 (426)
..|++.
T Consensus 67 ~~a~~e 72 (159)
T PRK13461 67 KNAKEE 72 (159)
T ss_pred HHHHHH
Confidence 666544
No 151
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=65.61 E-value=32 Score=27.01 Aligned_cols=50 Identities=24% Similarity=0.285 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccc
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKV 118 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~ 118 (426)
||...|..|+.+.|-+..-+.+|.+-+..-.+..+.-++++..|.+..+.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666655555555556666666655544
No 152
>PRK01362 putative translaldolase; Provisional
Probab=65.46 E-value=22 Score=34.19 Aligned_cols=83 Identities=12% Similarity=0.330 Sum_probs=49.7
Q ss_pred cCCcccccccccCCcccCCCCCchhHHHHHHHhcC--CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEE-EEeCHHHH
Q 014357 118 VGPFGTVKALRTNPTVVPDESVNPRLAKILEEVAV--GKELIVALANSNVKSMLEVWSTNIKRVGITNYLV-VALDDQTA 194 (426)
Q Consensus 118 ~~~~~~~~~~~t~p~~~p~~~~~p~L~~lL~~~A~--d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lV-vAlD~~a~ 194 (426)
.-+++.++++.|||++.-.+..+ +.+.+++++. ++.|-+-+....+.+|++-=.. +.+++ +|++| +-...+-.
T Consensus 16 ~~~~~~i~GvTTNPsll~k~g~~--~~~~~~~i~~~i~g~vs~qv~~~d~~~m~~~a~~-l~~~~-~~i~iKIP~T~~G~ 91 (214)
T PRK01362 16 ANELGVLDGVTTNPSLIAKEGRD--FEEVIKEICSIVDGPVSAEVIALDAEGMIKEGRE-LAKIA-PNVVVKIPMTPEGL 91 (214)
T ss_pred HHhCCCcceEcCCHHHHHhcCCC--HHHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHH-HHHhC-CCEEEEeCCCHHHH
Confidence 45677789999999999876543 4455555543 6677766665556666543222 33333 56655 55554434
Q ss_pred H---HHHHCCCCE
Q 014357 195 E---YCKTNDIPV 204 (426)
Q Consensus 195 ~---~c~~~g~~c 204 (426)
+ .+.+.|++|
T Consensus 92 ~a~~~L~~~Gi~v 104 (214)
T PRK01362 92 KAVKALSKEGIKT 104 (214)
T ss_pred HHHHHHHHCCCce
Confidence 4 444557764
No 153
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=65.31 E-value=27 Score=35.36 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=38.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccCCc
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPF 121 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~~~ 121 (426)
.=+.+|+++..+|++|..+|+++++.++...+.+.+....++...-+|-.
T Consensus 32 ~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~lv~g~L 81 (308)
T PF11382_consen 32 NLIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPRLVAGRL 81 (308)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 34577888888999999999999988888887777777766666666544
No 154
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=65.14 E-value=15 Score=29.51 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
+.+..+-++-..|..++++|++++.+++..|+.|++
T Consensus 36 ~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 36 ESIEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555555443
No 155
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=64.99 E-value=6 Score=30.96 Aligned_cols=19 Identities=26% Similarity=0.669 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHhhc
Q 014357 16 IAIAIVIGVLVGCVFAFLF 34 (426)
Q Consensus 16 ~~~~~~vgv~lg~~~a~~~ 34 (426)
|.+|+++|+++||.+|.-|
T Consensus 3 iilali~G~~~Gff~ar~~ 21 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARKY 21 (64)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6788889999999988866
No 156
>PF15456 Uds1: Up-regulated During Septation
Probab=64.76 E-value=17 Score=32.13 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 62 ESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 62 ~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
-|.|.|..||.|+..|+.....+++.+. |..|++-
T Consensus 19 Ls~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~Rd 53 (124)
T PF15456_consen 19 LSFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRD 53 (124)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4678888888888888887777776666 5555443
No 157
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=64.72 E-value=62 Score=29.53 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHhhcC
Q 014357 15 RIAIAIVIGVLVGCVFAFLFP 35 (426)
Q Consensus 15 ~~~~~~~vgv~lg~~~a~~~~ 35 (426)
-|+.++..+|+++++.-|.+|
T Consensus 9 ~~~~~i~F~ill~ll~~~~~~ 29 (161)
T COG0711 9 ILWQLIAFVILLWLLKKFVWK 29 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 567778888899999888883
No 158
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=64.64 E-value=40 Score=33.79 Aligned_cols=50 Identities=22% Similarity=0.227 Sum_probs=35.2
Q ss_pred CHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 014357 63 SPERVNMLKSD---IASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVL 112 (426)
Q Consensus 63 ~~~r~~~l~~~---~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~ 112 (426)
|.+.+.-+... +..+..||.+||+|+.|+.+++...++=+.+.++--..|
T Consensus 54 p~~~v~~~~~~~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 54 PFEFVDGVLEFLKSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHHHHHhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444 456777999999999999999998887777776443333
No 159
>TIGR00158 L9 ribosomal protein L9. Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast.
Probab=64.50 E-value=15 Score=33.22 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
++.++.++.+..+++++.++.+++..+|.++|.
T Consensus 41 ~~nl~~~e~~~~~~~~~~~~~~~~a~~l~~~l~ 73 (148)
T TIGR00158 41 KKNIEFFEARRKKLEEKLAANKAAAARLKEVLE 73 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 778888888888888888877777777776654
No 160
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=64.38 E-value=73 Score=25.53 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEe--CHHHHHHHHHC-CCCEEEeCCCCCcccccccCcchhhHhhHHHHHHHHHhcCc-c
Q 014357 167 SMLEVWSTNIKRVGITNYLVVAL--DDQTAEYCKTN-DIPVYQRDPDEGIDSIARKGGNHAVSGLKFRVLREFLQLDY-S 242 (426)
Q Consensus 167 d~~~Nwl~slkr~Gi~n~lVvAl--D~~a~~~c~~~-g~~c~~~~~~~g~d~~~gs~~f~~m~~~K~~~l~~vL~lGy-~ 242 (426)
+++.-|+.+.+++|+++++|+-- ++.+.+.|++. ++.++..... +. .....+.+ +..++.. ..+. -
T Consensus 5 ~~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~~~v~i~~~~~~------~~-~~~~~~~~-~~~~~~~--~~~~dW 74 (97)
T PF13704_consen 5 DYLPEWLAHHLALGVDHIYIYDDGSTDGTREILRALPGVGIIRWVDP------YR-DERRQRAW-RNALIER--AFDADW 74 (97)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhCCCcEEEEeCCC------cc-chHHHHHH-HHHHHHh--CCCCCE
Confidence 57899999999999999877643 35678888875 3333332110 00 01111221 1112221 1244 4
Q ss_pred eEEecccEEeecCc
Q 014357 243 VLLSDIDIVFLQNP 256 (426)
Q Consensus 243 VL~sDvDVVWlrnP 256 (426)
|++.|+|=++.-+|
T Consensus 75 vl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 75 VLFLDADEFLVPPP 88 (97)
T ss_pred EEEEeeeEEEecCC
Confidence 88999998877655
No 161
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=64.35 E-value=24 Score=31.59 Aligned_cols=48 Identities=33% Similarity=0.466 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVL 112 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~ 112 (426)
+++.-|.+++..++..+..|+.++.++..++..++....++++++..+
T Consensus 59 ~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 59 DKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555444433
No 162
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.34 E-value=18 Score=37.07 Aligned_cols=84 Identities=25% Similarity=0.286 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc--cCCcccccccccCCcccCC---CC
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHK--VGPFGTVKALRTNPTVVPD---ES 138 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~--~~~~~~~~~~~t~p~~~p~---~~ 138 (426)
.|++..|+++..+|.+.-+||++=.++|.+-....||.--.-+++..+|.+-.. .|.. +++.. +..| +.
T Consensus 224 eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~---~n~~~---~~~D~~~~~ 297 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKA---ENLEA---LDIDEAIEC 297 (365)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh---ccCcC---CCchhhhhc
Confidence 466778888999999999999999999999999999999999998877765433 3333 23322 2222 23
Q ss_pred CchhHHHHHHHhcCC
Q 014357 139 VNPRLAKILEEVAVG 153 (426)
Q Consensus 139 ~~p~L~~lL~~~A~d 153 (426)
..|.-+.+|+-.|.|
T Consensus 298 ~~~l~kq~l~~~A~d 312 (365)
T KOG2391|consen 298 TAPLYKQILECYALD 312 (365)
T ss_pred cchHHHHHHHhhhhh
Confidence 345556666666643
No 163
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.27 E-value=28 Score=34.56 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
++..|.+||.++..|.++|+- +.+|+...+.-.+..+++++++..+.++-
T Consensus 57 ~~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~g~ 106 (262)
T COG1729 57 RLTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLESGR 106 (262)
T ss_pred ccHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 577888888888888888886 55665555555555666666666666653
No 164
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=64.17 E-value=7.6 Score=33.34 Aligned_cols=34 Identities=35% Similarity=0.587 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHHHHHH
Q 014357 63 SPERVNMLKSDI--------ASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 63 ~~~r~~~l~~~~--------~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
.+.|++...+++ .+++++.++|++||++|++|+.
T Consensus 66 ~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 66 IPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred hhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355665555444 5888899999999999998864
No 165
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=63.98 E-value=27 Score=31.37 Aligned_cols=44 Identities=23% Similarity=0.434 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQ 108 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~ 108 (426)
+|...+..+|.+|.++|..|..+|..+.++|..+..--++..+.
T Consensus 28 ~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~ 71 (143)
T PF12718_consen 28 QENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR 71 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44555666777777777777777777777777766555555543
No 166
>PLN02870 Probable galacturonosyltransferase
Probab=63.39 E-value=19 Score=39.18 Aligned_cols=168 Identities=15% Similarity=0.167 Sum_probs=81.6
Q ss_pred hHhhHHHHHHHHHhcCc-ceEEecccEEeecCcccccccCC--cEe-eccCCCCCC-----cccCCCCCCC--CCccchh
Q 014357 225 VSGLKFRVLREFLQLDY-SVLLSDIDIVFLQNPFEYLYRDS--DVE-SMTDGHNNM-----TAYGYNDVFD--EPAMGWA 293 (426)
Q Consensus 225 m~~~K~~~l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~da--Di~-~ssD~~~~~-----ta~g~~dv~d--dP~~~w~ 293 (426)
+...|+.+- +++. -+ .||+.|.|||-.+|--+.+.-|- -+. +..|+.... ..+ ...++ +|.-. .
T Consensus 329 lny~Rl~LP-elLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~--~~YfNfs~p~i~-~ 403 (533)
T PLN02870 329 LNHLRIYLP-ELFP-NLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRF--RNYFNFSHPLIA-K 403 (533)
T ss_pred HHHHHHHHH-HHhh-hcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhh--hhhcccccchhh-c
Confidence 344555443 3444 24 79999999999999877765421 122 223321100 000 00111 11000 0
Q ss_pred hhcccccceecceeEEEE-----ecChhHHHHHHHHHHHh--CCCCCCchHHHHH--HhcCCCCCCCCCccceEEecccc
Q 014357 294 RYAHTMRIWVFNSGFFYI-----RPTIPSIELLDRVADRL--GKEKAWDQAVFNE--ELFFPSHPGYYGLHASKRVMDFY 364 (426)
Q Consensus 294 r~a~~~~~~~~NtGf~y~-----R~T~~s~~fl~~w~~rl--~~~~~~DQ~afN~--ll~~ps~~~~~gl~v~v~~Lp~~ 364 (426)
..... .-..|+|++++ |-..-+.+++ .|...- ..-..|||.++|. +++ .| .+..||..
T Consensus 404 ~fd~~--~cyfNSGVlLINL~~WRe~nITek~~-~~l~~n~~~~l~l~DQdaLp~~livf-------~g---~v~~LD~r 470 (533)
T PLN02870 404 NLDPE--ECAWAYGMNIFDLRAWRKTNIRETYH-SWLKENLKSNLTMWKLGTLPPALIAF-------KG---HVHPIDPS 470 (533)
T ss_pred ccCcc--cceeeccchhccHHHHHHcChHHHHH-HHHHhhhhcCceecccccccHhHHHh-------cC---ceEECChH
Confidence 00000 11578999986 3444444433 443322 2346899999962 232 12 13556553
Q ss_pred --ccCCCceehhhcchhhhccCCCeEEEEeCCc-----cChHHHHHHhhhhhccCccc
Q 014357 365 --LFMNSKVLFKTVRKDANLKKLKPVVVHVNYH-----PDKFPRMLAIVEFYVNGKQD 415 (426)
Q Consensus 365 --~F~nG~~~F~~~R~~~~~~~~~P~iVH~N~~-----~~K~~Rlre~~~wyl~~~~~ 415 (426)
.+..|+.. . .......+|.++|.|.. +.-+++.|..-.-|++.+..
T Consensus 471 WN~~gLgy~~----~-~~~~~i~~aaIIHY~G~~KPW~~~~~~~yr~~W~kYl~~s~~ 523 (533)
T PLN02870 471 WHMLGLGYQS----K-TNIESVKKAAVIHYNGQSKPWLEIGFEHLRPFWTKYVNYSND 523 (533)
T ss_pred HhcCCCCCcc----c-ccccccCCcEEEEECCCCCCccccCccchhHHHHHHHccCch
Confidence 23333211 1 11113468999998763 33445566666667776643
No 167
>CHL00160 rpl9 ribosomal protein L9; Provisional
Probab=63.24 E-value=18 Score=32.99 Aligned_cols=34 Identities=15% Similarity=0.020 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
++.++.++.+..+++++.++.+++..+|.++|..
T Consensus 46 ~~n~~~~e~~~~~~~~~~~~~~~~a~~la~~l~~ 79 (153)
T CHL00160 46 QGSLKQQKMYQKILDLKLKEAKEKCLKVKQLLEE 79 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6777778888888888887777777777777543
No 168
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=62.71 E-value=38 Score=28.97 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 014357 17 AIAIVIGVLVGCVFAFLF 34 (426)
Q Consensus 17 ~~~~~vgv~lg~~~a~~~ 34 (426)
+.+|..+|+++++.-|+|
T Consensus 4 ~~~i~Flil~~~l~~~~~ 21 (132)
T PF00430_consen 4 WQLINFLILFFLLNKFLY 21 (132)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666778888888877
No 169
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=62.59 E-value=17 Score=32.06 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
.|.+..|+..+..|++...+|.+++.+++++++..++.-.+++
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555555555544444444333
No 170
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=62.58 E-value=24 Score=28.19 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
+.|..|..|-..|+++...+...|+-|+.++...|
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e 46 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELE 46 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44555555544444444444444444444443333
No 171
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=62.50 E-value=14 Score=31.95 Aligned_cols=31 Identities=32% Similarity=0.441 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
|++.|..++..+++..+++++|++.+.+.|+
T Consensus 94 ~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 94 RIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555555554443
No 172
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=62.50 E-value=25 Score=33.73 Aligned_cols=83 Identities=16% Similarity=0.320 Sum_probs=48.4
Q ss_pred cCCcccccccccCCcccCCCCCchhHHHHHHHhcC--CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEE-EEeCHHHH
Q 014357 118 VGPFGTVKALRTNPTVVPDESVNPRLAKILEEVAV--GKELIVALANSNVKSMLEVWSTNIKRVGITNYLV-VALDDQTA 194 (426)
Q Consensus 118 ~~~~~~~~~~~t~p~~~p~~~~~p~L~~lL~~~A~--d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lV-vAlD~~a~ 194 (426)
+-+++.++++.|||++.-.+..+ +.++++++.. ++.|-+-+....+.+|++.=.+ +.+++ +|++| +-...+-+
T Consensus 16 ~~~~~~i~GvTTNPsll~k~g~~--~~~~~~~i~~~~~g~vs~qv~~~~~~~mi~~a~~-l~~~~-~~i~iKIP~T~~Gl 91 (213)
T TIGR00875 16 AAELGILAGVTTNPSLIAKEGRS--FWEVLKEIQEAVEGPVSAETISLDAEGMVEEAKE-LAKLA-PNIVVKIPMTSEGL 91 (213)
T ss_pred HHhcCCcceEeCCHHHHHhcCCC--HHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHH-HHHhC-CCeEEEeCCCHHHH
Confidence 44677789999999999876543 4455555432 5666666655556566553222 22332 56655 55554333
Q ss_pred H---HHHHCCCCE
Q 014357 195 E---YCKTNDIPV 204 (426)
Q Consensus 195 ~---~c~~~g~~c 204 (426)
+ .+.+.|++|
T Consensus 92 ~A~~~L~~~Gi~v 104 (213)
T TIGR00875 92 KAVKILKKEGIKT 104 (213)
T ss_pred HHHHHHHHCCCce
Confidence 3 445557764
No 173
>smart00338 BRLZ basic region leucin zipper.
Probab=62.40 E-value=19 Score=27.59 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=18.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhH
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQ 104 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~ 104 (426)
..+..|+.+...|.++..+|..++...++....
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666665555554443
No 174
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=62.32 E-value=8.7 Score=35.18 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhH------------HHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 61 CESPERVNMLKSDIASLTEKNA------------ELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 61 ~~~~~r~~~l~~~~~~~~~~~~------------~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
+.+.++.+.|+.|+.++.+|+. -|+.|++.|+++|...++.....+
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~ 93 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEK 93 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5557888899999988888764 477777777777777665555444
No 175
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=62.01 E-value=33 Score=33.14 Aligned_cols=82 Identities=13% Similarity=0.233 Sum_probs=47.4
Q ss_pred cccccccccCCcccCCCCCch--hHHHHHHHhcCCCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEE-EEeCHHHHH--
Q 014357 121 FGTVKALRTNPTVVPDESVNP--RLAKILEEVAVGKELIVALANSNVKSMLEVWSTNIKRVGITNYLV-VALDDQTAE-- 195 (426)
Q Consensus 121 ~~~~~~~~t~p~~~p~~~~~p--~L~~lL~~~A~d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lV-vAlD~~a~~-- 195 (426)
++.++++.|||++.-.+..++ .++++.+.+-.++.|.+-+....+.+|++.=.. +.+.+ +|++| +-...+-.+
T Consensus 19 ~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~v~~qv~~~d~e~mi~eA~~-l~~~~-~nv~IKIP~T~~Gl~Ai 96 (220)
T PRK12655 19 IFPIAGVTTNPSIIAASKESIWEVLPRLQKAIGGEGILFAQTMSRDAQGMVEEAKR-LRNAI-PGIVVKIPVTAEGLAAI 96 (220)
T ss_pred CCCccEEeCCHHHHHhcCCCHHHHHHHHHHHhCCCCCEEEEEeeCCHHHHHHHHHH-HHHhC-CCEEEEeCCCHHHHHHH
Confidence 345799999999998776542 333333333225667766666667677664222 33333 56655 555544444
Q ss_pred -HHHHCCCCE
Q 014357 196 -YCKTNDIPV 204 (426)
Q Consensus 196 -~c~~~g~~c 204 (426)
.+.+.|++|
T Consensus 97 ~~L~~~GI~v 106 (220)
T PRK12655 97 KKLKKEGIPT 106 (220)
T ss_pred HHHHHCCCce
Confidence 445568764
No 176
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=61.94 E-value=43 Score=35.19 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Q 014357 66 RVNMLKSDIASLTEK----NAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHK 117 (426)
Q Consensus 66 r~~~l~~~~~~~~~~----~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~ 117 (426)
....|++++.++..+ ...|..+...+++++..+|+...+.++|+..|..++.
T Consensus 68 ~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~ 123 (390)
T PRK10920 68 TNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDELQQKVA 123 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666554333 4456666667777777777777777777777666553
No 177
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=61.76 E-value=15 Score=28.28 Aligned_cols=28 Identities=39% Similarity=0.605 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLT 92 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~ 92 (426)
|-|..||.+|+.|+++|.+|+.|=+=|+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555544443
No 178
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=61.63 E-value=23 Score=34.27 Aligned_cols=82 Identities=12% Similarity=0.181 Sum_probs=48.4
Q ss_pred cccccccccCCcccCCCCCchhHHHHHHHhc----CCCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEE-EEeCHHHHH
Q 014357 121 FGTVKALRTNPTVVPDESVNPRLAKILEEVA----VGKELIVALANSNVKSMLEVWSTNIKRVGITNYLV-VALDDQTAE 195 (426)
Q Consensus 121 ~~~~~~~~t~p~~~p~~~~~p~L~~lL~~~A----~d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lV-vAlD~~a~~ 195 (426)
++.++++.|||++.-.+... ...+.++++. .++.|-+-+....+.+|+..=..-.+..| +|++| +-.-.+.++
T Consensus 19 ~~~i~GvTTNPsll~k~g~~-~~~~~~~~i~~~i~~~~~vs~ev~~~~~~~mi~eA~~l~~~~~-~nv~VKIP~T~~Gl~ 96 (222)
T PRK12656 19 ILPLAGVTSNPSIAKKEGDI-DFFERIREVREIIGDEASIHVQVVAQDYEGILKDAHEIRRQCG-DDVYIKVPVTPAGLA 96 (222)
T ss_pred cCCcceEeCCHHHHHhcCCC-CHHHHHHHHHHHhCCCCcEEEEEEECCHHHHHHHHHHHHHHhC-CCEEEEeCCCHHHHH
Confidence 34568999999999876431 2334444432 24567666666666666664333222345 66666 666665555
Q ss_pred HHH---HCCCCE
Q 014357 196 YCK---TNDIPV 204 (426)
Q Consensus 196 ~c~---~~g~~c 204 (426)
.|+ +.|++|
T Consensus 97 Ai~~L~~~Gi~v 108 (222)
T PRK12656 97 AIKTLKAEGYHI 108 (222)
T ss_pred HHHHHHHCCCce
Confidence 554 457764
No 179
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=61.46 E-value=62 Score=29.76 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 16 IAIAIVIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 16 ~~~~~~vgv~lg~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
+...|...|+++++.-|+|| - ... -. .+|-+....++...++..++..+...+.+++|
T Consensus 22 ~~~iInFliL~~lL~~~l~~-----p----i~~-------~l------~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l 79 (173)
T PRK13453 22 IVTVLTFIVLLALLKKFAWG-----P----LKD-------VM------DKRERDINRDIDDAEQAKLNAQKLEEENKQKL 79 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----H----HHH-------HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777777772 1 111 12 46667777777777777777777777777777
Q ss_pred HHHhhhhh
Q 014357 96 RLAEQGKD 103 (426)
Q Consensus 96 ~~a~qg~~ 103 (426)
..|++...
T Consensus 80 ~~a~~ea~ 87 (173)
T PRK13453 80 KETQEEVQ 87 (173)
T ss_pred HHHHHHHH
Confidence 66664433
No 180
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=61.44 E-value=61 Score=31.38 Aligned_cols=82 Identities=11% Similarity=0.218 Sum_probs=57.1
Q ss_pred CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEeCHHH-----HHHHHHCCCCEEEeCCCCCcccccccCcchhhHh
Q 014357 153 GKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDDQT-----AEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSG 227 (426)
Q Consensus 153 d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAlD~~a-----~~~c~~~g~~c~~~~~~~g~d~~~gs~~f~~m~~ 227 (426)
+-.++..-+...+.+....+.+-++++|++.++.++++.+- -..|+++|+-++. |- |+.
T Consensus 58 gipl~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v~~~lgl~~~~--PL------W~~-------- 121 (223)
T TIGR00290 58 GIPLIKLYTEGTEEDEVEELKGILHTLDVEAVVFGAIYSEYQKTRIERVCRELGLKSFA--PL------WHR-------- 121 (223)
T ss_pred CCCeEEeecCCCccHHHHHHHHHHHHcCCCEEEECCcccHHHHHHHHHHHHhcCCEEec--cc------cCC--------
Confidence 55555433444566777777888888899999999998543 3468888886664 22 211
Q ss_pred hHHHHHHHHHhcCcceEEecccE
Q 014357 228 LKFRVLREFLQLDYSVLLSDIDI 250 (426)
Q Consensus 228 ~K~~~l~~vL~lGy~VL~sDvDV 250 (426)
..-.++.++++.|+.++++=++.
T Consensus 122 ~~~~ll~e~i~~G~~aiIv~v~a 144 (223)
T TIGR00290 122 DPEKLMEEFVEEKFEARIIAVAA 144 (223)
T ss_pred CHHHHHHHHHHcCCeEEEEEEec
Confidence 14569999999999999865554
No 181
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=61.32 E-value=12 Score=32.76 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQ 90 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~ 90 (426)
+..|..||..|+=||-.|++|++.
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 568999999999999999999874
No 182
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=61.28 E-value=80 Score=28.10 Aligned_cols=67 Identities=21% Similarity=0.256 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 15 RIAIAIVIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 15 ~~~~~~~vgv~lg~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
-+..+|...|+++.+.-|+||. ... -. .+|-+..+.++...++.+++..+...+..++
T Consensus 7 ~~~~~i~Flil~~il~~~~~~p---------i~~-------~l------~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~ 64 (156)
T PRK05759 7 LIGQLIAFLILVWFIMKFVWPP---------IMK-------AL------EERQKKIADGLAAAERAKKELELAQAKYEAQ 64 (156)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH---------HHH-------HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777888887787721 111 11 4566666666666666666666666666666
Q ss_pred HHHHhhhhh
Q 014357 95 LRLAEQGKD 103 (426)
Q Consensus 95 l~~a~qg~~ 103 (426)
|..|++...
T Consensus 65 l~~a~~ea~ 73 (156)
T PRK05759 65 LAEARAEAA 73 (156)
T ss_pred HHHHHHHHH
Confidence 666654433
No 183
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=61.27 E-value=16 Score=37.52 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=18.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHhhccccc
Q 014357 78 TEKNAELQKQVRQLTAKLRLAEQG-KDQAQKQVMVLGEQHKV 118 (426)
Q Consensus 78 ~~~~~~l~~~~~~l~~kl~~a~qg-~~~a~~~~~~~~~~~~~ 118 (426)
+++..+|++|++.|+..++..|+. ...-..|+..+.+.+..
T Consensus 41 ~~~i~~Lq~QI~~Lq~ei~~l~~~~~~n~~~~f~tYsSkv~~ 82 (383)
T PF12097_consen 41 QQEISELQKQIQQLQAEINQLEEQNNSNNSSQFTTYSSKVDD 82 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccceehhhhhcc
Confidence 344444444444444444433322 22223455555555543
No 184
>PRK14160 heat shock protein GrpE; Provisional
Probab=61.24 E-value=29 Score=33.41 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQV 109 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~ 109 (426)
.+..|+.++.+|++++++|++++.+|+.++..+...-++..|..
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~ 98 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRT 98 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999877766666555443
No 185
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=61.06 E-value=63 Score=32.72 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHhhhhhHHHHHHHHhhcccccCCc
Q 014357 66 RVNMLKSDIASLTEKNAELQK-------QVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPF 121 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~-------~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~~~ 121 (426)
.++.+++++.+++.+.+.++. ++..+.+++..|+...+.|++++.++.+.++.|-.
T Consensus 87 ~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~v 149 (346)
T PRK10476 87 TVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGYV 149 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 455555666555554444432 23345566677777777888888888888887754
No 186
>PRK09039 hypothetical protein; Validated
Probab=60.81 E-value=32 Score=35.37 Aligned_cols=46 Identities=33% Similarity=0.421 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 014357 65 ERVNMLKSDIASLT-------EKNAELQKQVRQLTAKLRLAEQGKDQAQKQVM 110 (426)
Q Consensus 65 ~r~~~l~~~~~~~~-------~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~ 110 (426)
+.+..|.++|..|. .+++.|..++.+|+..++.|+.-+..++.+..
T Consensus 53 ~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 53 SALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555544 45566666666666666666665555554433
No 187
>PHA03162 hypothetical protein; Provisional
Probab=60.77 E-value=11 Score=33.49 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQ 90 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~ 90 (426)
+..|..||+.|+-||-.|++|++.
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999998864
No 188
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=60.76 E-value=6.4 Score=44.93 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=17.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 78 TEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 78 ~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
+++-.||+.||++|+|||..+.+.+.+.-
T Consensus 223 skte~eLr~QvrdLtEkLetlR~kR~EDk 251 (1243)
T KOG0971|consen 223 SKTEEELRAQVRDLTEKLETLRLKRAEDK 251 (1243)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 44445566666666666666665555443
No 189
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=60.72 E-value=21 Score=29.42 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
++...++.++..++++...+.++++++..+|
T Consensus 69 ~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 69 ERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444
No 190
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=60.45 E-value=15 Score=31.80 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=19.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
+.+.++++++.+|++++.+|++.++..++
T Consensus 71 ~~~~~~~~ei~~L~~el~~L~~E~diLKK 99 (121)
T PRK09413 71 SELAAAMKQIKELQRLLGKKTMENELLKE 99 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777665544
No 191
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=60.38 E-value=84 Score=26.80 Aligned_cols=8 Identities=25% Similarity=0.073 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 014357 25 LVGCVFAF 32 (426)
Q Consensus 25 ~lg~~~a~ 32 (426)
++-+++++
T Consensus 12 lvl~L~~~ 19 (110)
T PF10828_consen 12 LVLGLGGW 19 (110)
T ss_pred HHHHHHHH
Confidence 33334443
No 192
>PF13974 YebO: YebO-like protein
Probab=60.29 E-value=17 Score=29.73 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhc
Q 014357 20 IVIGVLVGCVFAFLF 34 (426)
Q Consensus 20 ~~vgv~lg~~~a~~~ 34 (426)
+++++++|+++-|+.
T Consensus 4 ~~~~~lv~livWFFV 18 (80)
T PF13974_consen 4 SVLVLLVGLIVWFFV 18 (80)
T ss_pred hHHHHHHHHHHHHHH
Confidence 457789999998877
No 193
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=60.23 E-value=30 Score=36.22 Aligned_cols=55 Identities=16% Similarity=0.352 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHH----------HHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Q 014357 61 CESPERVNMLKSDIASLTEKNAELQK----------QVRQLTAKLRLAEQGKDQAQKQVMVLGEQ 115 (426)
Q Consensus 61 ~~~~~r~~~l~~~~~~~~~~~~~l~~----------~~~~l~~kl~~a~qg~~~a~~~~~~~~~~ 115 (426)
-.-.+.++.|+.++.+++++.++|.+ |+++|+++++..++-..++++-....++.
T Consensus 238 l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~ 302 (406)
T PF02388_consen 238 LNGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAEYGDE 302 (406)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SE
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 34578888888888888888777766 57777777777777777777555555444
No 194
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=60.09 E-value=36 Score=35.56 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVL 112 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~ 112 (426)
.|++.++.....|..+|-.|+++-..|+..|.+--..|+...+.++..
T Consensus 58 ~~lq~~e~ra~~L~~q~~~L~~~~~NLtkeLN~t~~~K~~imq~ll~~ 105 (442)
T PF06637_consen 58 SRLQATEQRADRLYSQVVGLRASQANLTKELNLTTRAKDAIMQMLLNA 105 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhchhHHHHHHHHHHHHHh
Confidence 678888888888888888888888888888887777777766655543
No 195
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=59.65 E-value=45 Score=30.07 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=46.8
Q ss_pred ccchhhHHHHHHHHHHHHHHhhcCCCcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 014357 12 RGSRIAIAIVIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQL 91 (426)
Q Consensus 12 ~~~~~~~~~~vgv~lg~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l 91 (426)
.+.-+...|...|++.++--|+||- + .. -. .+|-+..++++...++.+.+..+...+.
T Consensus 22 n~t~~~~~inFliL~~lL~k~l~~P--i-------~~-------~l------~~R~~~I~~~l~~Ae~~~~ea~~~~~e~ 79 (156)
T CHL00118 22 NATLPLMALQFLLLMVLLNIILYKP--L-------LK-------VL------DERKEYIRKNLTKASEILAKANELTKQY 79 (156)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH--H-------HH-------HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566667777777777732 1 01 12 5777788888888888888888888888
Q ss_pred HHHHHHHhhhhh
Q 014357 92 TAKLRLAEQGKD 103 (426)
Q Consensus 92 ~~kl~~a~qg~~ 103 (426)
+++|..|++...
T Consensus 80 e~~L~~A~~ea~ 91 (156)
T CHL00118 80 EQELSKARKEAQ 91 (156)
T ss_pred HHHHHHHHHHHH
Confidence 888877765433
No 196
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=59.65 E-value=68 Score=29.82 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
.+|-+..+.++...++.+.+..+...+.+++|+.|++...
T Consensus 61 ~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~ 100 (181)
T PRK13454 61 AERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQ 100 (181)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777777777777777777777777664433
No 197
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=59.59 E-value=34 Score=30.05 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQL 91 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l 91 (426)
.-=|..|.++|.+++-|.+.|+.|+..|
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l 42 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARL 42 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333333
No 198
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=59.52 E-value=1.1e+02 Score=28.07 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccCCcccccccccCCcccCCCCCchhH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPFGTVKALRTNPTVVPDESVNPRL 143 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~~~~~~~~~~t~p~~~p~~~~~p~L 143 (426)
.||.+..+.++....-...++++..++...+-..-++...++.|+-. + +=..+--|.++..+. .+....|
T Consensus 48 ne~Y~~~k~~L~~all~k~e~K~~~K~~KK~~K~~~K~~k~~~k~~~----~----~~~r~~VldF~Gdi~--A~~v~~L 117 (155)
T PF08496_consen 48 NERYEDMKEQLKQALLDKKELKAWEKAEKKEEKAKAKAEKKAAKKAK----E----PKPRLFVLDFKGDIK--ASEVESL 117 (155)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhhhhhhhccC----C----CCCeEEEEecCCCcc--HHHHHHH
Confidence 57777788888777777777777777666553333333332222211 1 111222444444443 2323344
Q ss_pred HH----HHHHhcCCCeEEEEEcCcc
Q 014357 144 AK----ILEEVAVGKELIVALANSN 164 (426)
Q Consensus 144 ~~----lL~~~A~d~~VIvt~~N~~ 164 (426)
++ ||.-+-.+.+|+|-.-+.+
T Consensus 118 Reeisail~~a~~~DeV~~rLES~G 142 (155)
T PF08496_consen 118 REEISAILSVATPEDEVLVRLESPG 142 (155)
T ss_pred HHHHHHHHHhCCCCCeEEEEEecCC
Confidence 43 5544445888998776654
No 199
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=59.46 E-value=29 Score=31.48 Aligned_cols=42 Identities=29% Similarity=0.399 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
+|+..|++.+..+.++.++|-++..++..+++...|+...++
T Consensus 101 k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~~ 142 (145)
T COG1730 101 KRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAAQ 142 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555555555566666666666555555554444
No 200
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=59.37 E-value=18 Score=40.75 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHK 117 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~ 117 (426)
--++.|+.||.+++.|++.|.+.++|++..|..+...-.+=+.++..|.++++
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~ 317 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLD 317 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999887666555555666665544
No 201
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=59.21 E-value=41 Score=26.45 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 014357 16 IAIAIVIGVLVGCVFAFL 33 (426)
Q Consensus 16 ~~~~~~vgv~lg~~~a~~ 33 (426)
++++.+||+++|+++|=.
T Consensus 5 ~l~Ga~~Ga~~glL~aP~ 22 (74)
T PF12732_consen 5 FLAGAAAGAAAGLLFAPK 22 (74)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 344445555555555543
No 202
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=59.21 E-value=17 Score=41.03 Aligned_cols=33 Identities=33% Similarity=0.529 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 60 SCESPERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 60 ~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
+..+.|| .||+||.++.+||++|+..+.+|...
T Consensus 450 ~l~~~Er--~lk~eL~qlr~ene~Lq~Kl~~L~~a 482 (697)
T PF09726_consen 450 SLTNNER--SLKSELSQLRQENEQLQNKLQNLVQA 482 (697)
T ss_pred hccccch--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455 67788888888888888877766543
No 203
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=58.86 E-value=38 Score=29.98 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=13.8
Q ss_pred chhhHHHHHHHHHHHHHH----hhcCCCcccC
Q 014357 14 SRIAIAIVIGVLVGCVFA----FLFPHGFFSS 41 (426)
Q Consensus 14 ~~~~~~~~vgv~lg~~~a----~~~~~~~~~s 41 (426)
+-|..|++||++ |+... +=||+=+|-+
T Consensus 7 ~~i~paa~~gav-GY~Y~wwKGws~sD~M~vT 37 (126)
T PF07889_consen 7 SLIVPAAAIGAV-GYGYMWWKGWSFSDLMFVT 37 (126)
T ss_pred chhhHHHHHHHH-HheeeeecCCchhHHHHHH
Confidence 455656666655 54432 2255555543
No 204
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=58.73 E-value=43 Score=26.71 Aligned_cols=38 Identities=32% Similarity=0.440 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQK 107 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~ 107 (426)
+...++.|..++.++.+++.+|..++..+++.....+.
T Consensus 31 ~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 31 LNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777777777777777776666555543
No 205
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=58.63 E-value=23 Score=39.64 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Q 014357 83 ELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHK 117 (426)
Q Consensus 83 ~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~ 117 (426)
.++..++++++|+..+|+...++++|...|.+.+.
T Consensus 375 ~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~ 409 (656)
T PRK06975 375 QAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQ 409 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555667777888888777777777777776654
No 206
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=58.49 E-value=90 Score=31.22 Aligned_cols=108 Identities=15% Similarity=0.291 Sum_probs=64.1
Q ss_pred CCCCchhHHHHHHHhcC--CCeE-EEEEcCcchHHHHHHHHHHHHHc---CCC-cEEEEEeCHHHHHHHH---HCCCCEE
Q 014357 136 DESVNPRLAKILEEVAV--GKEL-IVALANSNVKSMLEVWSTNIKRV---GIT-NYLVVALDDQTAEYCK---TNDIPVY 205 (426)
Q Consensus 136 ~~~~~p~L~~lL~~~A~--d~~V-Ivt~~N~~~~d~~~Nwl~slkr~---Gi~-n~lVvAlD~~a~~~c~---~~g~~c~ 205 (426)
+.+-|++ +|++.-. |=+| |+.++-..|..|++.|++|..+. |.+ +|.|++=+.......+ .+.+.++
T Consensus 17 egtf~~~---~l~~~y~~~n~tIgl~vfatGkY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~~~p~v~lg~~r~~~V~ 93 (271)
T cd02515 17 EGTFNPD---VLDEYYRKQNITIGLTVFAVGKYTEFLERFLESAEKHFMVGYRVIYYIFTDKPAAVPEVELGPGRRLTVL 93 (271)
T ss_pred cCcCCHH---HHHHHHHhcCCEEEEEEEEeccHHHHHHHHHHHHHHhccCCCeeEEEEEeCCcccCcccccCCCceeEEE
Confidence 4555554 4555443 3344 34466777989999999999875 654 5666655444432211 0112222
Q ss_pred EeCCCCCcccccccCcchhhHhhHHHHHHHHHh--c--Ccc-eEEecccEEeecC
Q 014357 206 QRDPDEGIDSIARKGGNHAVSGLKFRVLREFLQ--L--DYS-VLLSDIDIVFLQN 255 (426)
Q Consensus 206 ~~~~~~g~d~~~gs~~f~~m~~~K~~~l~~vL~--l--Gy~-VL~sDvDVVWlrn 255 (426)
... ....+..++-.|...+....+ . .+| +.+.|+|.++..+
T Consensus 94 ~v~---------~~~~W~~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ 139 (271)
T cd02515 94 KIA---------EESRWQDISMRRMKTLADHIADRIGHEVDYLFCMDVDMVFQGP 139 (271)
T ss_pred Eec---------cccCCcHHHHHHHHHHHHHHHHhhcccCCEEEEeeCCceEeec
Confidence 221 224566677778888877765 3 456 5567999998774
No 207
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=58.33 E-value=17 Score=29.37 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=20.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 74 IASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 74 ~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
+..|.+||+.|++++..|.+.|+...
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999998877666543
No 208
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=58.29 E-value=35 Score=32.60 Aligned_cols=84 Identities=12% Similarity=0.246 Sum_probs=47.4
Q ss_pred cCCcccccccccCCcccCCCCCchhHHHHHHHhcC--CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEE-EEeCHHHH
Q 014357 118 VGPFGTVKALRTNPTVVPDESVNPRLAKILEEVAV--GKELIVALANSNVKSMLEVWSTNIKRVGITNYLV-VALDDQTA 194 (426)
Q Consensus 118 ~~~~~~~~~~~t~p~~~p~~~~~p~L~~lL~~~A~--d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lV-vAlD~~a~ 194 (426)
.-+++.++++.|||++.-.+... ...+.+++++. ++.|.+-+....+.+|++.=.. +.+. ..+++| +....+..
T Consensus 15 ~~~~~~i~GvTTNPsll~k~~~~-~~~~~~~~i~~~~~~~v~~qv~~~~~e~~i~~a~~-l~~~-~~~~~iKIP~T~~gl 91 (211)
T cd00956 15 ASETGLLDGVTTNPSLIAKSGRI-DFEAVLKEICEIIDGPVSAQVVSTDAEGMVAEARK-LASL-GGNVVVKIPVTEDGL 91 (211)
T ss_pred HHhcCCcCccccCHHHHHhcCCc-CHHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHH-HHHh-CCCEEEEEcCcHhHH
Confidence 34677778999999999876542 34455555432 5556655555555555554222 3233 235544 66665555
Q ss_pred HHH---HHCCCCE
Q 014357 195 EYC---KTNDIPV 204 (426)
Q Consensus 195 ~~c---~~~g~~c 204 (426)
+.| .+.|++|
T Consensus 92 ~ai~~L~~~gi~v 104 (211)
T cd00956 92 KAIKKLSEEGIKT 104 (211)
T ss_pred HHHHHHHHcCCce
Confidence 544 4456653
No 209
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=58.18 E-value=36 Score=33.27 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=51.1
Q ss_pred CcccccccccCCcccCCCCCchhHHHHHHHh-c--CCCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEE-EEeC-----
Q 014357 120 PFGTVKALRTNPTVVPDESVNPRLAKILEEV-A--VGKELIVALANSNVKSMLEVWSTNIKRVGITNYLV-VALD----- 190 (426)
Q Consensus 120 ~~~~~~~~~t~p~~~p~~~~~p~L~~lL~~~-A--~d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lV-vAlD----- 190 (426)
+++.++++.|||++.-.+... .+.++++++ + .++.|-+-+....+.+|++-=.. +..++ +|++| +-..
T Consensus 23 ~~g~i~GvTTNPsll~k~g~~-~~~~~~~~i~~~~~~~~vs~EV~~~d~~~m~~eA~~-l~~~~-~nv~VKIP~T~~~G~ 99 (236)
T TIGR02134 23 THPYVKGFTTNPSLMRKAGIV-DYEAFAHEALAQITDLPISFEVFADDLDEMEKEARY-IASWG-NNVNVKIPVTNTKGE 99 (236)
T ss_pred hCCCeeEEeCCHHHHHhcCCC-CHHHHHHHHHHHccCCcEEEEEecCCHHHHHHHHHH-HHhcC-CCeEEEECCcCcccc
Confidence 356679999999999876532 355555553 2 36677766666777777665322 34455 67766 4433
Q ss_pred --HHHHHHHHHCCCCE
Q 014357 191 --DQTAEYCKTNDIPV 204 (426)
Q Consensus 191 --~~a~~~c~~~g~~c 204 (426)
-++.+.+.+.|++|
T Consensus 100 ~~l~ai~~L~~~GI~v 115 (236)
T TIGR02134 100 STGPLIQKLSADGITL 115 (236)
T ss_pred hHHHHHHHHHHCCCcE
Confidence 33445667778874
No 210
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=58.04 E-value=1.9e+02 Score=28.32 Aligned_cols=37 Identities=11% Similarity=-0.009 Sum_probs=26.4
Q ss_pred eEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEeCHHHHHHHHHCCCC
Q 014357 155 ELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDDQTAEYCKTNDIP 203 (426)
Q Consensus 155 ~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAlD~~a~~~c~~~g~~ 203 (426)
..|...++. ..+...||--|.+|.- ...+++.+.|++
T Consensus 169 V~I~GHTD~-~Gs~~~N~~LS~~RA~-----------aV~~yLv~~GI~ 205 (239)
T TIGR03789 169 LDLSGYADR-RGDSQYNQALSEQRVL-----------EVRSYLIKQGVD 205 (239)
T ss_pred EEEEEeCCC-CCChhhHHHHHHHHHH-----------HHHHHHHHcCCC
Confidence 455555543 4678899999998873 467788888886
No 211
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=57.97 E-value=9.2 Score=30.72 Aligned_cols=22 Identities=32% Similarity=0.690 Sum_probs=15.6
Q ss_pred ccchhhHHHHHHHHHHHHHHhh
Q 014357 12 RGSRIAIAIVIGVLVGCVFAFL 33 (426)
Q Consensus 12 ~~~~~~~~~~vgv~lg~~~a~~ 33 (426)
+.--+++|+++|+++|+.++|+
T Consensus 58 ~~lil~l~~~~Gl~lgi~~~~~ 79 (82)
T PF13807_consen 58 RALILALGLFLGLILGIGLAFL 79 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677777888888887774
No 212
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=57.93 E-value=34 Score=34.82 Aligned_cols=55 Identities=15% Similarity=0.302 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Q 014357 59 SSCESPERVNMLKSDI-------ASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGE 114 (426)
Q Consensus 59 ~~~~~~~r~~~l~~~~-------~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~ 114 (426)
.+|-| +-.+.|+.+| .....+.+++++|+.+++.++...+..+.+.+.++..+..
T Consensus 199 ~~~d~-~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 199 EDCDP-TELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HhCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46654 3344444444 4444555555556666666666666666666666655554
No 213
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=57.91 E-value=23 Score=30.26 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
+|+..|+.++..++++..++++|++++...++.
T Consensus 94 ~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 94 KRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555443
No 214
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=57.88 E-value=32 Score=29.62 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhH
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQ 104 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~ 104 (426)
|++.+.+|..+|+.+.+.++||+.|+.-|.++-+.
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777777777777666554
No 215
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=57.86 E-value=81 Score=28.50 Aligned_cols=38 Identities=26% Similarity=0.260 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
.+|-+....++...++.+.+..+...+.+++|..|++.
T Consensus 38 ~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~e 75 (164)
T PRK14471 38 KEREDSIKNALASAEEARKEMQNLQADNERLLKEARAE 75 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777888887777777777777777777777654
No 216
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=57.76 E-value=25 Score=29.00 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 59 SSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 59 ~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
.+|.=|..++.|-.||+.++.+..-|+++|.+|.-++.
T Consensus 48 ~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~ 85 (88)
T PF14389_consen 48 SPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLF 85 (88)
T ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445789999999999999999999999999988764
No 217
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=57.26 E-value=82 Score=28.86 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 15 RIAIAIVIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 15 ~~~~~~~vgv~lg~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
-+...|-.-|+++++.-|+| .- ... -. .+|-+..++++...++...+..+...+..++
T Consensus 25 ~~~~~inflil~~lL~~fl~-----kP----i~~-------~l------~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~ 82 (167)
T PRK08475 25 IIERTINFLIFVGILWYFAA-----KP----LKN-------FY------KSRINKISKRLEEIQEKLKESKEKKEDALKK 82 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HH----HHH-------HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556678888887777 11 111 12 4677777777777777777777777777777
Q ss_pred HHHHhhh
Q 014357 95 LRLAEQG 101 (426)
Q Consensus 95 l~~a~qg 101 (426)
|..|++.
T Consensus 83 L~~Ar~e 89 (167)
T PRK08475 83 LEEAKEK 89 (167)
T ss_pred HHHHHHH
Confidence 7666543
No 218
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=57.25 E-value=99 Score=27.96 Aligned_cols=62 Identities=19% Similarity=0.194 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 18 IAIVIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 18 ~~~~vgv~lg~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
..|-.-|+++++.-|+|| . ... -. .+|-+..+.++...++.+++..+...+.+++|..
T Consensus 14 ~~inflil~~lL~~fl~k-----p----i~~-------~l------~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~ 71 (164)
T PRK14473 14 QLINFLLLIFLLRTFLYR-----P----VLN-------LL------NERTRRIEESLRDAEKVREQLANAKRDYEAELAK 71 (164)
T ss_pred HHHHHHHHHHHHHHHHHH-----H----HHH-------HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677888888872 1 111 12 4677777777777777777777777777776666
Q ss_pred Hhhh
Q 014357 98 AEQG 101 (426)
Q Consensus 98 a~qg 101 (426)
|++.
T Consensus 72 A~~e 75 (164)
T PRK14473 72 ARQE 75 (164)
T ss_pred HHHH
Confidence 6543
No 219
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=57.22 E-value=62 Score=26.14 Aligned_cols=48 Identities=23% Similarity=0.477 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 59 SSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 59 ~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
..|.|..+++.|.+++..|.-+-+.|...++-+.+..+-|.-...+|-
T Consensus 19 AGc~s~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn 66 (78)
T COG4238 19 AGCSSNAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARAN 66 (78)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 456667777777777777777777777777777766666654444443
No 220
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=57.15 E-value=15 Score=39.48 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=21.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccc
Q 014357 75 ASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKV 118 (426)
Q Consensus 75 ~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~ 118 (426)
.+|++|.++|++|+.+++.+++..|+--++-+.++..|.++.++
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444444556777777644
No 221
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=57.00 E-value=44 Score=25.53 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
+.-|+.|.+++.+|+.+...|+.+|....+....|.|--+
T Consensus 9 s~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 9 SSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888888888888888887777776554
No 222
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=56.39 E-value=26 Score=32.83 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHhhhhhHHHHHHHHhhcccc
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAK-LRLAEQGKDQAQKQVMVLGEQHK 117 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k-l~~a~qg~~~a~~~~~~~~~~~~ 117 (426)
.+-+.+..+.....++..+..++--.++++ ++.|++.+.+.++++..|.++++
T Consensus 117 N~C~e~~~~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~ 170 (176)
T PF12999_consen 117 NTCAELGKEYREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQ 170 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544444444444443333333 34455555556666666555443
No 223
>PHA03155 hypothetical protein; Provisional
Probab=56.29 E-value=14 Score=32.06 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQ 90 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~ 90 (426)
+..|..||..|+-||-.|+++++.
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 668999999999999999999865
No 224
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=56.24 E-value=1e+02 Score=28.27 Aligned_cols=62 Identities=19% Similarity=0.219 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 18 IAIVIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 18 ~~~~vgv~lg~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
..|...|+++++.-|+|| . ... -. .+|-+...+++...++.+.+..+...+.+++|..
T Consensus 22 ~~i~Flil~~iL~~~~~k-----p----i~~-------~l------~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~ 79 (173)
T PRK13460 22 TLVTFLVVVLVLKKFAWD-----V----ILK-------AL------DERASGVQNDINKASELRLEAEALLKDYEARLNS 79 (173)
T ss_pred HHHHHHHHHHHHHHHhHH-----H----HHH-------HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566677777777772 1 111 12 4666777777777777777777777777777766
Q ss_pred Hhhh
Q 014357 98 AEQG 101 (426)
Q Consensus 98 a~qg 101 (426)
|++.
T Consensus 80 a~~e 83 (173)
T PRK13460 80 AKDE 83 (173)
T ss_pred HHHH
Confidence 6543
No 225
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=56.05 E-value=31 Score=32.09 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
..|+..+-.++..++++.++++||.++.++..
T Consensus 117 I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~ 148 (192)
T PF05529_consen 117 IRRVHSLIKELIKLEEKLEALKKQAESASEAA 148 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 35667777888899999999999887665443
No 226
>PRK04325 hypothetical protein; Provisional
Probab=55.99 E-value=94 Score=24.82 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
.+|+..|+..++=.+...++|-+.|-+....++..
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L 42 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLL 42 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777666666666555555544444333
No 227
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=55.91 E-value=24 Score=34.75 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQK 107 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~ 107 (426)
+-+.++|=-..+++|.||++|++.+.+++...++..+..++
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777666666655553
No 228
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=55.86 E-value=58 Score=27.59 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=46.6
Q ss_pred cCCCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEeCHHHHHHHHHCCCCEEEeCCC
Q 014357 151 AVGKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDDQTAEYCKTNDIPVYQRDPD 210 (426)
Q Consensus 151 A~d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAlD~~a~~~c~~~g~~c~~~~~~ 210 (426)
...+++++.+..++...-+..-++.+++.|+ .++.++-+.+..+.|.+.|.+++.++.+
T Consensus 41 ~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~-~iI~IT~~~~l~~~~~~~~~~~~~~p~~ 99 (119)
T cd05017 41 VDRKTLVIAVSYSGNTEETLSAVEQAKERGA-KIVAITSGGKLLEMAREHGVPVIIIPKG 99 (119)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHcCCcEEECCCC
Confidence 3467899999999987777778888888888 4455556778888999899999987544
No 229
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=55.61 E-value=28 Score=41.10 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 014357 60 SCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQV 109 (426)
Q Consensus 60 ~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~ 109 (426)
+=....|+++|.++-...+++-..+++++++..|-|+.|++.+..|++-+
T Consensus 1537 T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai 1586 (1758)
T KOG0994|consen 1537 TKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAI 1586 (1758)
T ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457899999999999999999999999999999999999999998543
No 230
>PRK14127 cell division protein GpsB; Provisional
Probab=55.57 E-value=27 Score=30.21 Aligned_cols=29 Identities=31% Similarity=0.530 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
..|..++..|+++|+.|++++.+++.++.
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555666666666666666666666555
No 231
>PRK04406 hypothetical protein; Provisional
Probab=55.52 E-value=89 Score=25.07 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
.+|+..|...++-.+...++|-+.|-+....+
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I 41 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELNDALSQQQLLI 41 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666555555555555444444333
No 232
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=55.46 E-value=99 Score=29.45 Aligned_cols=64 Identities=16% Similarity=0.203 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 15 RIAIAIVIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 15 ~~~~~~~vgv~lg~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
-+..+|..+|++.+|--|+||- ... -. .+|-+...+++...++.+++..+...+.+++
T Consensus 56 l~w~~I~FliL~~lL~k~~~~p---------I~~-------vL------e~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~ 113 (204)
T PRK09174 56 LLWLAITFGLFYLFMSRVILPR---------IGG-------II------ETRRDRIAQDLDQAARLKQEADAAVAAYEQE 113 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHH-------HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777731 111 11 4666667777777777777666666666666
Q ss_pred HHHHhh
Q 014357 95 LRLAEQ 100 (426)
Q Consensus 95 l~~a~q 100 (426)
|..|++
T Consensus 114 L~~Ar~ 119 (204)
T PRK09174 114 LAQARA 119 (204)
T ss_pred HHHHHH
Confidence 666553
No 233
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=55.31 E-value=3.9 Score=31.94 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=0.0
Q ss_pred cccchhhHHHHHHHHHHHHHHhhc
Q 014357 11 IRGSRIAIAIVIGVLVGCVFAFLF 34 (426)
Q Consensus 11 ~~~~~~~~~~~vgv~lg~~~a~~~ 34 (426)
+..+-+.+|+++|+++|.+||++.
T Consensus 5 ~~~~~vlaavIaG~Vvgll~ailL 28 (64)
T PF01034_consen 5 FERSEVLAAVIAGGVVGLLFAILL 28 (64)
T ss_dssp ------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHHH
Confidence 344567789999999999999876
No 234
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=55.28 E-value=28 Score=28.96 Aligned_cols=36 Identities=19% Similarity=0.428 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 62 ESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 62 ~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
..+++++.|+.++..++.+.+.++.+..-+...+.+
T Consensus 67 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 67 SDSPELKELEEELEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777777777777777777766666665543
No 235
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=55.10 E-value=35 Score=37.06 Aligned_cols=92 Identities=21% Similarity=0.204 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhhcCCCcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 21 VIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 21 ~vgv~lg~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
.|..+|+-+-.-..=|=|+=-+|+.+..+++..-.|. -..+..++.....+++|+.|++.++.++.-||+..-+
T Consensus 408 ~V~~ii~~Lt~~~~~~L~~Ik~SprYvdrl~~~L~qk------~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~ 481 (507)
T PF05600_consen 408 AVEEIISQLTNPRTQHLFMIKSSPRYVDRLVESLQQK------LKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVE 481 (507)
T ss_pred HHHHHHHHhcCHHHHHHHHHhcCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3555555554332222222223445555555444444 4556677788889999999999999999999999999
Q ss_pred hhhHHHHHHHH-hhccccc
Q 014357 101 GKDQAQKQVMV-LGEQHKV 118 (426)
Q Consensus 101 g~~~a~~~~~~-~~~~~~~ 118 (426)
-..+-++++.. +.+.|+-
T Consensus 482 ~Tr~Lq~~iE~~ISk~y~g 500 (507)
T PF05600_consen 482 RTRELQKQIEADISKRYKG 500 (507)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 99999998877 6666654
No 236
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=55.05 E-value=23 Score=38.74 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccc
Q 014357 71 KSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKV 118 (426)
Q Consensus 71 ~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~ 118 (426)
..|+.+++.|++||..++.++..|....+|-..++|..+++|.-.+..
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieq 139 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQ 139 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 457889999999999999999999999999999999999888765543
No 237
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=54.82 E-value=60 Score=29.62 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGK 102 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~ 102 (426)
.+|-+...+++...++.+.+..+...+..++|..|++..
T Consensus 40 e~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea 78 (167)
T PRK14475 40 DAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQA 78 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888888888888888776443
No 238
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=54.67 E-value=1.1e+02 Score=27.80 Aligned_cols=90 Identities=16% Similarity=0.183 Sum_probs=53.6
Q ss_pred chhHHHHHHHhcCC-----CeEEEEEcCcc----hHHHHHHHHHHHHHcC---CC-cEEEEE----------------eC
Q 014357 140 NPRLAKILEEVAVG-----KELIVALANSN----VKSMLEVWSTNIKRVG---IT-NYLVVA----------------LD 190 (426)
Q Consensus 140 ~p~L~~lL~~~A~d-----~~VIvt~~N~~----~~d~~~Nwl~slkr~G---i~-n~lVvA----------------lD 190 (426)
.|.|+++|+.+... ..+++..=.+. +.++....+.-+++.+ .. ++++.. .+
T Consensus 59 ~ptl~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sf~~~~~~~~~~~~~~~~~ 138 (179)
T cd08555 59 PPTLEEVLELIADYLKNPDYTIILSLEIKQDSPEYDEFLAKVLKELRVYFDYDLRGKVVLSSFNALGVDYYNFSSKLIKD 138 (179)
T ss_pred CCCHHHHHHHHHhhhhcCCCceEEEEEeCCCCCcchHHHHHHHHHHHHcCCcccCCCEEEEeecccCCChhcccchhhcC
Confidence 47888888877642 34444433332 3456666777776665 43 333322 24
Q ss_pred HHHHHHHHHCCCCEEEeCCCCCcccccccCcchhhHhhH-HHHHHHHHhcCcceEEec
Q 014357 191 DQTAEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGLK-FRVLREFLQLDYSVLLSD 247 (426)
Q Consensus 191 ~~a~~~c~~~g~~c~~~~~~~g~d~~~gs~~f~~m~~~K-~~~l~~vL~lGy~VL~sD 247 (426)
++..+.+.+.|++++.... .+ ...++.++++|.+-++||
T Consensus 139 ~~~v~~~~~~g~~v~~wtv------------------n~~~~~~~~l~~~Gvd~i~TD 178 (179)
T cd08555 139 TELIASANKLGLLSRIWTV------------------NDNNEIINKFLNLGVDGLITD 178 (179)
T ss_pred HHHHHHHHHCCCEEEEEee------------------CChHHHHHHHHHcCCCEEeCC
Confidence 4555555555555544322 23 667888899999999988
No 239
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=54.56 E-value=30 Score=35.31 Aligned_cols=41 Identities=24% Similarity=0.462 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 60 SCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 60 ~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
.....+||..|+.++..|+++..++++|+.-++.+|..|..
T Consensus 170 ~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqe 210 (323)
T PF08537_consen 170 PSSNSDRVILLQKKIDELEERLNDLEKELEITKKDLKFAQE 210 (323)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445999999999999999998888888888888888854
No 240
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=54.49 E-value=63 Score=26.36 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQ 104 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~ 104 (426)
|=...|.+.+.+.-+.++=|+-+|.||++|-....+..++
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666666666666665555444443
No 241
>PRK14161 heat shock protein GrpE; Provisional
Probab=54.46 E-value=37 Score=31.77 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQ 108 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~ 108 (426)
=...|+..+.++.++.++|++|+.+|++|+..+...-++..|.
T Consensus 13 ~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR 55 (178)
T PRK14161 13 INDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKR 55 (178)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788889999999999999999999987776555555544
No 242
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=54.39 E-value=73 Score=26.39 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQ 104 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~ 104 (426)
+..|+.|++++.+++.+-..++.++..-.++-..|.|--|+
T Consensus 30 ss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 30 ASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 56789999999999999999999999999999999887764
No 243
>PHA02562 46 endonuclease subunit; Provisional
Probab=54.25 E-value=1.4e+02 Score=32.14 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=9.3
Q ss_pred EEEEeCHHHHHHHHHCCC
Q 014357 185 LVVALDDQTAEYCKTNDI 202 (426)
Q Consensus 185 lVvAlD~~a~~~c~~~g~ 202 (426)
++..+|+..-..+...|.
T Consensus 444 ~~~~~~~~~~~~~~~~g~ 461 (562)
T PHA02562 444 YNFTLDEEFNETIKSRGR 461 (562)
T ss_pred EEEEechhhhhHHhcCCC
Confidence 344556655555555553
No 244
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=54.20 E-value=22 Score=38.24 Aligned_cols=40 Identities=25% Similarity=0.376 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 014357 71 KSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVM 110 (426)
Q Consensus 71 ~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~ 110 (426)
.++|--|+++++||.|||.||+.-.|-+++.-.+|.+++.
T Consensus 617 r~qIh~Le~~Reelsk~V~DLtssaQgakKAVhdaK~ElA 656 (790)
T PF07794_consen 617 RNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHDAKVELA 656 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3455667777777777777777777766666666665544
No 245
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=54.09 E-value=46 Score=31.78 Aligned_cols=41 Identities=22% Similarity=0.358 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
=|.....|+..|++||.+|+.|+.+|.+.-+..|+-...-.
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~ 81 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQRLH 81 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677789999999999999999999998777775554443
No 246
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=54.09 E-value=33 Score=29.59 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
+++..|..++..|+++.++|++..++|..++...+
T Consensus 80 ~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~ 114 (118)
T cd04776 80 KMLEKIEKRRAELEQQRRDIDAALAELDAAEERCR 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888888876543
No 247
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=53.69 E-value=59 Score=27.90 Aligned_cols=58 Identities=26% Similarity=0.332 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 15 RIAIAIVIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 15 ~~~~~~~vgv~lg~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
.++=+++|.+++|-+.+|+| |-.+- ++ .=.+..+.-+..+.+++ ++||+|...||+..
T Consensus 36 i~sq~~lv~glvgW~~sYlf-----RV~t~-----------~M----Ty~~Q~k~Ye~a~~~~~--~~~lqkRle~l~~e 93 (104)
T PF11460_consen 36 IWSQALLVLGLVGWVSSYLF-----RVVTG-----------KM----TYMQQRKDYEEAVDQLT--NEELQKRLEELSPE 93 (104)
T ss_pred HHHHHHHHHHHHHHHhHHHh-----hhccC-----------CC----cHHHHHHHHHHHHHHHh--HHHHHHHHHhCCHH
Confidence 34456778888999999999 65441 22 11233444444444443 34777777777654
No 248
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=53.66 E-value=32 Score=29.20 Aligned_cols=34 Identities=35% Similarity=0.512 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
+++..+|+.++..|+++.++|++....|..++..
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~ 111 (113)
T cd01109 78 PERLELLEEHREELEEQIAELQETLAYLDYKIDY 111 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788899999999999999988888888887753
No 249
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=53.48 E-value=27 Score=33.74 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=12.4
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 014357 80 KNAELQKQVRQLTAKLRLAEQGKDQAQKQV 109 (426)
Q Consensus 80 ~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~ 109 (426)
+-..|++++++.+.+|..|+...+.-+||.
T Consensus 159 ~~~kL~~el~~~~~~Le~~~~~~~al~Kq~ 188 (216)
T KOG1962|consen 159 DLEKLETELEKKQKKLEKAQKKVDALKKQS 188 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444443
No 250
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=53.39 E-value=39 Score=35.76 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 014357 62 ESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVM 110 (426)
Q Consensus 62 ~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~ 110 (426)
++-++-..|.++|++++++++.+..|+.+....+...++-.....+++.
T Consensus 56 ~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~ 104 (420)
T COG4942 56 EQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLN 104 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence 3456667788888888888877777777766666666555444443333
No 251
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=53.36 E-value=85 Score=25.42 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
+-++.++..+..++++-+++.+|++++..+.+
T Consensus 26 ~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n 57 (90)
T PF06103_consen 26 KTLDEVNKTIDTLQEQVDPITKEINDLLHNTN 57 (90)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34566666667777777777777776666644
No 252
>PHA03385 IX capsid protein IX,hexon associated protein IX; Provisional
Probab=53.21 E-value=58 Score=28.76 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 60 SCESPERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 60 ~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
+..-.|.+..|-.||..|+++.+||-.||.+|++.
T Consensus 95 s~~~ed~L~~llaqLealsqqL~~ls~qv~~L~~~ 129 (135)
T PHA03385 95 SSLAEDKLLVLLAQLEALSQQLQELSQQVAQLREQ 129 (135)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33445677777888888888888888888888765
No 253
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=53.16 E-value=1.1e+02 Score=29.50 Aligned_cols=81 Identities=10% Similarity=0.204 Sum_probs=55.9
Q ss_pred CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEeCHH-----HHHHHHHCCCCEEEeCCCCCcccccccCcchhhHh
Q 014357 153 GKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDDQ-----TAEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSG 227 (426)
Q Consensus 153 d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAlD~~-----a~~~c~~~g~~c~~~~~~~g~d~~~gs~~f~~m~~ 227 (426)
+=.++...++..|.+-++..++.+++.|++.++.++++.+ .-..|.+.|+-++. |- |+..
T Consensus 58 giPl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~vc~~~gl~~~~--PL------W~~d------- 122 (222)
T TIGR00289 58 GIPLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGAIESNYQKSRIDKVCRELGLKSIA--PL------WHAD------- 122 (222)
T ss_pred CCCeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHHHHHHcCCEEec--cc------cCCC-------
Confidence 5555655666668888888888898899999999999854 33468888886554 21 2111
Q ss_pred hHHHHHHHHHhcCcceEEecccE
Q 014357 228 LKFRVLREFLQLDYSVLLSDIDI 250 (426)
Q Consensus 228 ~K~~~l~~vL~lGy~VL~sDvDV 250 (426)
.-.++ ++++.|+.++++=++.
T Consensus 123 -~~~l~-e~i~~Gf~aiIv~v~~ 143 (222)
T TIGR00289 123 -PEKLM-YEVAEKFEVIIVSVSA 143 (222)
T ss_pred -HHHHH-HHHHcCCeEEEEEEcc
Confidence 22344 7889999999865553
No 254
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=53.14 E-value=49 Score=34.70 Aligned_cols=54 Identities=11% Similarity=0.080 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 60 SCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 60 ~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
....+-+.+.|...+..+++++..|+.|.++|++++..+++...+.++++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 10 ASSTTHTERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567778888888888888888888888888888888887777777776664
No 255
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=53.06 E-value=34 Score=29.24 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
.++..+|..+...++++.++|+++.+.|..++...+++
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~ 115 (116)
T cd04769 78 PHLQQALEDKKQEIRAQITELQQLLARLDAFEASLKDA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 46678899999999999999999999988888776653
No 256
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.04 E-value=62 Score=32.26 Aligned_cols=53 Identities=13% Similarity=0.295 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHK 117 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~ 117 (426)
..++.++++.+.++.+.+.|..||.++..|.+-.....++-+..+..|..+++
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~ 90 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIA 90 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888888888888888888888877877777765
No 257
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.92 E-value=13 Score=29.68 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=10.7
Q ss_pred CCCCCHHHHHHHHHHH
Q 014357 59 SSCESPERVNMLKSDI 74 (426)
Q Consensus 59 ~~~~~~~r~~~l~~~~ 74 (426)
+...++|=+++.-++.
T Consensus 36 NPpine~~iR~M~~qm 51 (71)
T COG3763 36 NPPINEEMIRMMMAQM 51 (71)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 5566677777776666
No 258
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=52.69 E-value=25 Score=28.42 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 62 ESPERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 62 ~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
+|-|-...++.-+..+.++.++|.++|.+|++|
T Consensus 47 VtREEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 47 VTREEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 556666777777777777777777777777653
No 259
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=52.47 E-value=36 Score=35.40 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
+...|...+..++++++.|+.+.++|.+++...++....-++++..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 2 RLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455667777777778888888888888887777777777777766554
No 260
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=52.39 E-value=16 Score=26.54 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVR 89 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~ 89 (426)
.-|++.|+.++..|..||.+|++++-
T Consensus 20 ~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 20 SIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp ----------HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 56788888888888888888888764
No 261
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=52.37 E-value=48 Score=32.06 Aligned_cols=41 Identities=27% Similarity=0.431 Sum_probs=30.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 76 SLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 76 ~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
..+++...+..+++.|+++|..||.-.+.|...+..|..++
T Consensus 166 ~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~i 206 (237)
T PF00261_consen 166 KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEI 206 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677888888888888888888888887777666543
No 262
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=52.21 E-value=63 Score=36.47 Aligned_cols=22 Identities=18% Similarity=0.033 Sum_probs=15.5
Q ss_pred HHHHHHhcCcceEEecccEEeecCc
Q 014357 232 VLREFLQLDYSVLLSDIDIVFLQNP 256 (426)
Q Consensus 232 ~l~~vL~lGy~VL~sDvDVVWlrnP 256 (426)
+...+-+.|..||+.|.| +|+|
T Consensus 567 LA~~lA~~g~rvLlID~D---~~~~ 588 (754)
T TIGR01005 567 AAALIASGGKRALLIDAD---GRKA 588 (754)
T ss_pred HHHHHHhCCCeEEEEeCC---CCch
Confidence 344455689999999998 4455
No 263
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=52.05 E-value=95 Score=32.20 Aligned_cols=55 Identities=22% Similarity=0.207 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHhhcccccCC
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQG-KDQAQKQVMVLGEQHKVGP 120 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg-~~~a~~~~~~~~~~~~~~~ 120 (426)
++..++.+++..+++...|+.|+..+++.+..++-. -++|+.++.++.+..+.|=
T Consensus 92 al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~ 147 (352)
T COG1566 92 ALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGV 147 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 456777789999999999999999999999999986 8899999998888886653
No 264
>PRK04325 hypothetical protein; Provisional
Probab=51.96 E-value=55 Score=26.15 Aligned_cols=49 Identities=22% Similarity=0.176 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
+.+...|..|+.+.|-+.+=|.+|.+-+-.-.+..+.-++|+..|.++.
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665544444455555555554433
No 265
>COG0359 RplI Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]
Probab=51.86 E-value=37 Score=30.96 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
+.=++.++.+.++++++.++.+.+..+|.++|..
T Consensus 41 ~~n~~~~e~~r~~~e~~~~~~~~~a~~lk~~Le~ 74 (148)
T COG0359 41 KGNLKLLEARRAKLEKKAAEELAEAEALKEKLEG 74 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5566777888888888888888888888887754
No 266
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=51.81 E-value=64 Score=34.09 Aligned_cols=69 Identities=19% Similarity=0.227 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHhhccc---ccCCcccccccccCCc
Q 014357 60 SCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE-QGKDQAQKQVMVLGEQH---KVGPFGTVKALRTNPT 132 (426)
Q Consensus 60 ~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~-qg~~~a~~~~~~~~~~~---~~~~~~~~~~~~t~p~ 132 (426)
+--|.-+...-..-|..|.+.|++||.=+.+|+ .-+ -.+..|.+|+-+|+++. |.-.+..++.....|.
T Consensus 39 ~~~s~R~~sq~l~~le~l~qqNEdLk~~~e~lr----~~~~~d~~~am~~v~~Le~~~~npk~~~~E~~k~~~r~~n 111 (580)
T KOG3705|consen 39 GGDSIRAWSQTLEALEKLQQQNEDLKSILEKLR----QERNDDHKKAMEQVHQLEPNPENPKLPKPEPVKEIIRKPN 111 (580)
T ss_pred CcccHHHHHHHHHHHHHHHHhhHHHHHHHHHHh----cccccchhhHHHHHhhCCCCcCCcCcCCCCchHHHhcCCc
Confidence 444556666666667777888887776544443 333 33456788888888763 2233445555544443
No 267
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=51.75 E-value=42 Score=31.70 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHhhc
Q 014357 16 IAIAIVIGVLVGCVFAFLF 34 (426)
Q Consensus 16 ~~~~~~vgv~lg~~~a~~~ 34 (426)
+.+.++||+++|++++|++
T Consensus 2 ~ii~~i~~~~vG~~~G~~~ 20 (201)
T PF12072_consen 2 IIIIAIVALIVGIGIGYLV 20 (201)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777
No 268
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=51.69 E-value=16 Score=37.25 Aligned_cols=38 Identities=32% Similarity=0.380 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 61 CESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 61 ~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
|++-||.+.|+.|+..|.++..|++..++-|++++...
T Consensus 75 ~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 75 SESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 45556666666666666666666666666666655443
No 269
>PRK15362 pathogenicity island 2 effector protein SseC; Provisional
Probab=51.67 E-value=26 Score=37.18 Aligned_cols=53 Identities=26% Similarity=0.383 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccCCcccc
Q 014357 62 ESPERVNMLKSDIASLTEKNAEL-QKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPFGTV 124 (426)
Q Consensus 62 ~~~~r~~~l~~~~~~~~~~~~~l-~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~~~~~~ 124 (426)
.+.+.++.+..++...++.-+.| .||+.|++++++.|+...+.|+ |+|.|+.|
T Consensus 102 ~~ad~a~s~~kq~ei~td~Q~~LR~k~~~e~q~qi~ka~e~adkA~----------KagIf~~i 155 (473)
T PRK15362 102 VFGDNAQSLCQALEIATEVQEALRDKQVKEYQEQIQKAIEQEDKAR----------KAGIFGAI 155 (473)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hccHHHHH
Confidence 44566777777776666555555 4789999999999999889888 56666544
No 270
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=51.64 E-value=48 Score=32.31 Aligned_cols=64 Identities=25% Similarity=0.310 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccCCccccccccc
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPFGTVKALRT 129 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~~~~~~~~~~t 129 (426)
++...+|..|..+-+||.+|.++..+|+.++..-..--..-++..+.|.+..+.=| +.|..|++
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~-~ev~~L~~ 198 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP-GEVYDLKK 198 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch-hHHHHHHH
Confidence 44555555555555566666655555555544433333344444555555444333 23344443
No 271
>PRK12376 putative translaldolase; Provisional
Probab=51.49 E-value=47 Score=32.49 Aligned_cols=82 Identities=16% Similarity=0.261 Sum_probs=47.9
Q ss_pred CcccccccccCCcccCCCCCchhHHHHHHHhcC---CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEE-EEeCH----
Q 014357 120 PFGTVKALRTNPTVVPDESVNPRLAKILEEVAV---GKELIVALANSNVKSMLEVWSTNIKRVGITNYLV-VALDD---- 191 (426)
Q Consensus 120 ~~~~~~~~~t~p~~~p~~~~~p~L~~lL~~~A~---d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lV-vAlD~---- 191 (426)
+++.++++.|||++.-.+... .+.++++++.. ++.|-+-+....+.+|++.=.+ +.+.+ +|++| +....
T Consensus 23 ~~g~i~GVTTNPsll~k~g~~-~~~~~~~~i~~~~~~~~vs~EV~~~d~~~mv~eA~~-l~~~~-~nv~VKIP~T~~~G~ 99 (236)
T PRK12376 23 KNPLVKGFTTNPSLMRKAGVT-DYKAFAKEVLAEIPDAPISFEVFADDLETMEKEAEK-IASLG-ENVYVKIPITNTKGE 99 (236)
T ss_pred hCCCeeEEECCHHHHHhcCCC-CHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHH-HHHhC-CCeEEEECCcCccch
Confidence 456678999999999876432 24444444332 4567666666666677654222 33333 57666 44442
Q ss_pred ---HHHHHHHHCCCCE
Q 014357 192 ---QTAEYCKTNDIPV 204 (426)
Q Consensus 192 ---~a~~~c~~~g~~c 204 (426)
++.+.+.+.|++|
T Consensus 100 ~gl~Ai~~L~~~GI~v 115 (236)
T PRK12376 100 STIPLIKKLSADGVKL 115 (236)
T ss_pred hHHHHHHHHHHCCCeE
Confidence 3344556678874
No 272
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=51.40 E-value=28 Score=34.63 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhH
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQ 104 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~ 104 (426)
...+..+..|++||+.|+.||.+|+..+....+-+.+
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556777778888887777777776655544443
No 273
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=51.36 E-value=1e+02 Score=30.03 Aligned_cols=61 Identities=20% Similarity=0.186 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 18 IAIVIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 18 ~~~~vgv~lg~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
-.|-..|+++++.-|+||- ... -. .+|-+....++...++...+..+...+.+++|..
T Consensus 11 qiInFlil~~lL~kfl~kP---------i~~-------~l------~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~ 68 (246)
T TIGR03321 11 QLINFLILVWLLKRFLYRP---------ILD-------AM------DAREKKIAGELADADTKKREAEQERREYEEKNEE 68 (246)
T ss_pred HHHHHHHHHHHHHHHhHHH---------HHH-------HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566778887787721 111 12 4666677777777777776666666666666666
Q ss_pred Hhh
Q 014357 98 AEQ 100 (426)
Q Consensus 98 a~q 100 (426)
|++
T Consensus 69 a~~ 71 (246)
T TIGR03321 69 LDQ 71 (246)
T ss_pred HHH
Confidence 643
No 274
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=51.34 E-value=1.3e+02 Score=31.42 Aligned_cols=110 Identities=23% Similarity=0.347 Sum_probs=68.4
Q ss_pred hHHHHHHHhcC----CCeEEEEEcCc--------------------------chHHHHHHHHHHHHHcCCC--cEEEEEe
Q 014357 142 RLAKILEEVAV----GKELIVALANS--------------------------NVKSMLEVWSTNIKRVGIT--NYLVVAL 189 (426)
Q Consensus 142 ~L~~lL~~~A~----d~~VIvt~~N~--------------------------~~~d~~~Nwl~slkr~Gi~--n~lVvAl 189 (426)
.|++|.+.+|. ..+||+...-. +..-++..|-+.|.+.|+. .+|+-.-
T Consensus 29 ~l~~l~~~ia~L~~~G~eVilVSSGAiaaG~~~Lg~~~rp~~l~~kQA~AAVGQ~~Lm~~y~~~f~~~g~~v~QiLLTr~ 108 (369)
T COG0263 29 KLEELVRQVAALHKAGHEVVLVSSGAIAAGRTRLGLPKRPKTLAEKQAAAAVGQVRLMQLYEELFARYGIKVGQILLTRD 108 (369)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEccchhhhChhhcCCCCCCcchHHHHHHHHhCHHHHHHHHHHHHHhcCCeeeEEEeehh
Confidence 67777777764 45565554332 2357889999999999863 4555444
Q ss_pred CHH----------HHHHHHHCCC-CEEEeCCCCC-c-ccccccCcchhhHhhHHHHHHHHHhcCcceEEecccEEeecCc
Q 014357 190 DDQ----------TAEYCKTNDI-PVYQRDPDEG-I-DSIARKGGNHAVSGLKFRVLREFLQLDYSVLLSDIDIVFLQNP 256 (426)
Q Consensus 190 D~~----------a~~~c~~~g~-~c~~~~~~~g-~-d~~~gs~~f~~m~~~K~~~l~~vL~lGy~VL~sDvDVVWlrnP 256 (426)
|-. |...|-++|+ |... +.+.- . ...+| ++..++. ++-.+.+...=||+||+|=.+-.||
T Consensus 109 D~~~r~ry~Nar~Tl~~Ll~~gvVPIIN-ENDtva~~EikfG--DND~LsA----~VA~lv~ADlLvlLsDiDGLyd~nP 181 (369)
T COG0263 109 DFSDRRRYLNARNTLSALLELGVVPIIN-ENDTVATEEIKFG--DNDTLSA----LVAILVGADLLVLLSDIDGLYDANP 181 (369)
T ss_pred hhhhHHHHHHHHHHHHHHHHCCceeeec-CCCceeeeeeeec--CCchHHH----HHHHHhCCCEEEEEEccCcccCCCC
Confidence 422 3334445553 5554 32211 1 11122 3444444 6777888999999999999999999
Q ss_pred cc
Q 014357 257 FE 258 (426)
Q Consensus 257 ~~ 258 (426)
..
T Consensus 182 r~ 183 (369)
T COG0263 182 RT 183 (369)
T ss_pred CC
Confidence 54
No 275
>PRK15396 murein lipoprotein; Provisional
Probab=51.23 E-value=95 Score=25.25 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQ 104 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~ 104 (426)
...|+.|++++.+++.+-+.++..+..-.+.-..|.|--|+
T Consensus 31 ssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 31 SSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999888888876553
No 276
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=51.17 E-value=45 Score=31.09 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-----hhhhHHHHHHHHhhcccc
Q 014357 60 SCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE-----QGKDQAQKQVMVLGEQHK 117 (426)
Q Consensus 60 ~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~-----qg~~~a~~~~~~~~~~~~ 117 (426)
....++|..+|+.+...++++.++|.++...+-.++--.. +.-++-.+++..|+..++
T Consensus 80 ~~t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~ 142 (175)
T PRK13182 80 QNISSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLK 142 (175)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3345699999999999999999999988888777754332 444455555655555544
No 277
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=51.13 E-value=53 Score=33.92 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQ 108 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~ 108 (426)
.+.+..|+.+...|+++|+.|+.+++++.++|...-..|++-+.+
T Consensus 136 l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~ 180 (342)
T PF06632_consen 136 LDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEED 180 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888999999999999999999988888888887766
No 278
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=51.07 E-value=35 Score=29.55 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 63 SPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
..+=...|+..+..|++..++|.+++..++++++..+
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~ 121 (129)
T cd00584 85 LEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLE 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555554444
No 279
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=50.83 E-value=2.2e+02 Score=28.73 Aligned_cols=96 Identities=19% Similarity=0.259 Sum_probs=60.3
Q ss_pred hhHHHHHHH---hcC--CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEE--eCHHHHHHHHHCCCCEEEeCCCCC-
Q 014357 141 PRLAKILEE---VAV--GKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVA--LDDQTAEYCKTNDIPVYQRDPDEG- 212 (426)
Q Consensus 141 p~L~~lL~~---~A~--d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvA--lD~~a~~~c~~~g~~c~~~~~~~g- 212 (426)
|-..++++. .+. +-.++++.++. -.+-....++.+..-+++-+++.. .++...+.+.+.++|++.++....
T Consensus 71 ~~~~~i~~gi~~~~~~~gy~~~l~~~~~-~~~~e~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~~P~V~i~~~~~~ 149 (333)
T COG1609 71 PFFAEILKGIEEAAREAGYSLLLANTDD-DPEKEREYLETLLQKRVDGLILLGERPNDSLLELLAAAGIPVVVIDRSPPG 149 (333)
T ss_pred chHHHHHHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHhcCCCEEEEeCCCcc
Confidence 444444444 333 55677666665 245556667777777899998887 666788899999999988764321
Q ss_pred --cccccccCcchhhHhhHHHHHHHHHhcCcc
Q 014357 213 --IDSIARKGGNHAVSGLKFRVLREFLQLDYS 242 (426)
Q Consensus 213 --~d~~~gs~~f~~m~~~K~~~l~~vL~lGy~ 242 (426)
.++.. .. +... =-..+..|+++|+.
T Consensus 150 ~~~~~V~-~D-n~~~---~~~a~~~L~~~G~~ 176 (333)
T COG1609 150 LGVPSVG-ID-NFAG---AYLATEHLIELGHR 176 (333)
T ss_pred CCCCEEE-EC-hHHH---HHHHHHHHHHCCCc
Confidence 11111 11 1111 12367889999985
No 280
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=50.80 E-value=34 Score=29.02 Aligned_cols=42 Identities=31% Similarity=0.425 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQA 105 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a 105 (426)
.+=+..|+..+..++++..+|.+++++++++++..++.-.+.
T Consensus 76 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 76 EEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666666666666666666555544433
No 281
>PF08838 DUF1811: Protein of unknown function (DUF1811); InterPro: IPR014938 This entry consists uncharacterised bacterial proteins. Some of the proteins are annotated as being transcriptional regulators (see Q4MQL7 from SWISSPROT, Q65MA2 from SWISSPROT). The structure of one of the proteins has revealed a beta-barrel like structure with helix-turn-helix like motif. ; PDB: 2YXY_A 1SF9_A.
Probab=50.80 E-value=17 Score=31.04 Aligned_cols=25 Identities=32% Similarity=0.326 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 82 AELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 82 ~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
.||+.++..|++|.+.|||-..-.+
T Consensus 10 ~EL~~Ei~~L~ekarKAEq~G~~nE 34 (102)
T PF08838_consen 10 EELRQEIARLKEKARKAEQLGIVNE 34 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccH
Confidence 6899999999999999999755443
No 282
>PRK01844 hypothetical protein; Provisional
Probab=50.76 E-value=14 Score=29.57 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 014357 17 AIAIVIGVLVGCVFAFLF 34 (426)
Q Consensus 17 ~~~~~vgv~lg~~~a~~~ 34 (426)
.+|++||+++||.+|--+
T Consensus 11 I~~li~G~~~Gff~ark~ 28 (72)
T PRK01844 11 VVALVAGVALGFFIARKY 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666666666544
No 283
>PRK04654 sec-independent translocase; Provisional
Probab=50.59 E-value=51 Score=31.77 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHK 117 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~ 117 (426)
+..++|+..- -+.+||++++++++++++.++++-.+.++|+..-....+
T Consensus 44 ~~vk~El~~E-l~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~~~~ 92 (214)
T PRK04654 44 DSVKQELERE-LEAEELKRSLQDVQASLREAEDQLRNTQQQVEQGARALH 92 (214)
T ss_pred HHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444332 346788888888888888888887777777765554433
No 284
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=50.42 E-value=11 Score=40.55 Aligned_cols=31 Identities=16% Similarity=0.415 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
.+++++||+||.+|+++.++|.++|++.+.+
T Consensus 30 ~qkie~L~kql~~Lk~q~~~l~~~v~k~e~~ 60 (489)
T PF11853_consen 30 LQKIEALKKQLEELKAQQDDLNDRVDKVEKH 60 (489)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhhHh
Confidence 3578888888888888888888888776665
No 285
>PRK00846 hypothetical protein; Provisional
Probab=50.22 E-value=1.2e+02 Score=24.54 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
.+|+..|...++-.+...++|-+.|-+....++
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~ 44 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGA 44 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666665555555555444444333333
No 286
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=49.94 E-value=55 Score=31.91 Aligned_cols=39 Identities=33% Similarity=0.405 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 014357 71 KSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQV 109 (426)
Q Consensus 71 ~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~ 109 (426)
|.....+++|.+|+.|+-.+|...|...|-..++.++.+
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erl 172 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERL 172 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443333333333
No 287
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=49.74 E-value=49 Score=26.55 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HhhhhhHHHHH
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRL-AEQGKDQAQKQ 108 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~-a~qg~~~a~~~ 108 (426)
+....++..|++||=.|+=.|.-|.++|+. +..+...+.++
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~ke 44 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKE 44 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 445667777777777777777777777773 34555555554
No 288
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=49.73 E-value=1.1e+02 Score=27.53 Aligned_cols=40 Identities=10% Similarity=0.232 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQ 104 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~ 104 (426)
+.+..|+.|+...+...+.-.+++++|+.+.+.++....+
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666655544433
No 289
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=49.65 E-value=62 Score=28.48 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
.|++.|...+..++++.++++++++++.+.++.+.+.
T Consensus 101 ~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 101 KRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666666655544
No 290
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=49.62 E-value=59 Score=32.85 Aligned_cols=43 Identities=26% Similarity=0.451 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQ 108 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~ 108 (426)
+=..|..++.++.+++++|-++|+|+.++.+......++--++
T Consensus 28 kR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeinee 70 (294)
T COG1340 28 KRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEE 70 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356667777777777777777777777777766666655544
No 291
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=49.53 E-value=52 Score=33.49 Aligned_cols=54 Identities=13% Similarity=0.329 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Q 014357 64 PERVNMLKSDIASLTEKNAEL-----------QKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHK 117 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l-----------~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~ 117 (426)
.+|.+.|+.++.+|.+-.+|+ |+++.++...+....+.-.+.++|+..+...+.
T Consensus 178 ~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 178 RDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777776666555443 333333333333333444444455555555444
No 292
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=49.34 E-value=75 Score=26.61 Aligned_cols=49 Identities=22% Similarity=0.252 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 68 NMLKSDIASLTEKNAELQK---QVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~---~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
..|...+..|.++.++|+. |+.++.+++...|+--.+--++...|+..+
T Consensus 45 ~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 45 AGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555555444443 333333355555555554445555555443
No 293
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=49.29 E-value=1.1e+02 Score=29.96 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHhhcCCCcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 17 AIAIVIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 17 ~~~~~vgv~lg~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
+-.|-.-|+++++.-|+| +--. . -+ .+|-+...+++...++..++.++...+.++++.
T Consensus 10 ~qiInFlILv~lL~~fl~-----kPi~----~-------~l------~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~ 67 (250)
T PRK14474 10 AQIINFLILVYLLRRFLY-----KPII----Q-------VM------KKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQ 67 (250)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHH----H-------HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556668888888888 2211 1 12 466666667777666666666666666666666
Q ss_pred HHhhh
Q 014357 97 LAEQG 101 (426)
Q Consensus 97 ~a~qg 101 (426)
.+++.
T Consensus 68 ~a~~e 72 (250)
T PRK14474 68 SLEQQ 72 (250)
T ss_pred HHHHH
Confidence 55543
No 294
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=49.01 E-value=51 Score=33.83 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=26.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
.|...|.+||+.||||.++|+.||...|-
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999988763
No 295
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=48.99 E-value=73 Score=29.52 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
..|++++..-.+++..+++++..+..||+.
T Consensus 47 ~~le~~f~~~~~~lq~~~~el~~~~~kL~~ 76 (170)
T COG2825 47 ADLESEFKKRQKELQKMQKELKAKEAKLQD 76 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 788899998899999999999999999885
No 296
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=48.95 E-value=59 Score=29.01 Aligned_cols=48 Identities=23% Similarity=0.262 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQ 115 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~ 115 (426)
..|..++..++.+++.|..++..|++++..+|+.-..++.....+...
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~ 102 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQ 102 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555444444444433
No 297
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=48.76 E-value=31 Score=37.91 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh------------hhHHHHHHHHhhcccc
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTAKLRLAEQG------------KDQAQKQVMVLGEQHK 117 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg------------~~~a~~~~~~~~~~~~ 117 (426)
-..++..|.++..+|++|+.|++..|+.|..+ .+..+|++..|.++++
T Consensus 634 h~~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~ 693 (759)
T KOG0981|consen 634 HEKSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLK 693 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHH
Confidence 34677888999999999999999999999654 2455666777766653
No 298
>PRK02119 hypothetical protein; Provisional
Probab=48.72 E-value=73 Score=25.38 Aligned_cols=50 Identities=24% Similarity=0.177 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHK 117 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~ 117 (426)
..+...|..|+.+.+-+.+-|.+|.+-+-.-.|..+.-++|+..|.++.+
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777777777777777666655556666666666655443
No 299
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=48.61 E-value=2.8e+02 Score=29.67 Aligned_cols=16 Identities=6% Similarity=0.027 Sum_probs=11.7
Q ss_pred HHHHHHCCCCEEEeCC
Q 014357 194 AEYCKTNDIPVYQRDP 209 (426)
Q Consensus 194 ~~~c~~~g~~c~~~~~ 209 (426)
.+.|.+.++|++.+-.
T Consensus 214 mklAekf~lPIVtLVD 229 (431)
T PLN03230 214 MRHAEKFGFPILTFVD 229 (431)
T ss_pred HHHHHHcCCCEEEEEe
Confidence 3468888999877643
No 300
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=48.60 E-value=15 Score=28.19 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=17.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhh
Q 014357 77 LTEKNAELQKQVRQLTAKLRLAEQGK 102 (426)
Q Consensus 77 ~~~~~~~l~~~~~~l~~kl~~a~qg~ 102 (426)
..||-+.||+++.||.++....|...
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~EN 37 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEEN 37 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777666543
No 301
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=48.49 E-value=16 Score=30.69 Aligned_cols=18 Identities=39% Similarity=0.567 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 014357 17 AIAIVIGVLVGCVFAFLF 34 (426)
Q Consensus 17 ~~~~~vgv~lg~~~a~~~ 34 (426)
.+.++||++|||+..++.
T Consensus 38 lIs~viGilLG~~~~~~~ 55 (93)
T PF06946_consen 38 LISVVIGILLGAAAYPLT 55 (93)
T ss_pred HHHHHHHHHHHHHhhhcC
Confidence 688999999999988766
No 302
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=48.37 E-value=55 Score=31.92 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
+|+..|+.++..+.++++++++++.++++++
T Consensus 70 ~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 70 ERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443333
No 303
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=48.10 E-value=51 Score=25.54 Aligned_cols=31 Identities=16% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
.+++.|...+++|.+|..+|+.|++++....
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 304
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=48.06 E-value=1e+02 Score=26.94 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
.+|-+..+.++...++...+..+...+..++|..|++...
T Consensus 35 ~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~ 74 (140)
T PRK07353 35 EEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQ 74 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888888888888888888888877765543
No 305
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=47.75 E-value=30 Score=35.59 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHH
Q 014357 63 SPERVNMLKSDIASLTEKNAELQKQ 87 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~~~~~~~l~~~ 87 (426)
.-+++..|+.|+++|..|...|++|
T Consensus 40 ~~~~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 40 DQQEISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777777777777777666666
No 306
>PRK14148 heat shock protein GrpE; Provisional
Probab=47.67 E-value=42 Score=31.89 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQ 108 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~ 108 (426)
.--..+.+++..++++.++|++|+.+|++++..+...-++..|.
T Consensus 33 ~e~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR 76 (195)
T PRK14148 33 LEELSVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKR 76 (195)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344567788888888888888888888876665555555443
No 307
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=47.56 E-value=55 Score=29.87 Aligned_cols=20 Identities=45% Similarity=0.602 Sum_probs=11.5
Q ss_pred HhHHHHHHHHHHHHHHHHHh
Q 014357 80 KNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 80 ~~~~l~~~~~~l~~kl~~a~ 99 (426)
-|++|++|+.+|+++...++
T Consensus 52 d~eeLk~~i~~lq~~~~~~~ 71 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNKTAK 71 (155)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666655433
No 308
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=47.22 E-value=79 Score=30.21 Aligned_cols=40 Identities=30% Similarity=0.402 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
.+.+..|+.++..++..-++|+.++++|+.|+..++.-++
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777777777777666654433
No 309
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=47.18 E-value=67 Score=31.54 Aligned_cols=42 Identities=31% Similarity=0.524 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
+|...|..++..+.++..+|.+++.+|.+++..-|+--..++
T Consensus 103 ~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 103 ERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444333333
No 310
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=47.15 E-value=61 Score=29.56 Aligned_cols=8 Identities=38% Similarity=0.588 Sum_probs=4.0
Q ss_pred EEEeCHHH
Q 014357 186 VVALDDQT 193 (426)
Q Consensus 186 VvAlD~~a 193 (426)
+.-+|+..
T Consensus 118 ~~Gldeqi 125 (155)
T PF06810_consen 118 LKGLDEQI 125 (155)
T ss_pred cccHHHHH
Confidence 45555544
No 311
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=47.11 E-value=40 Score=31.93 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHh
Q 014357 59 SSCESPERVNMLKSDIASLTEKN-AELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 59 ~~~~~~~r~~~l~~~~~~~~~~~-~~l~~~~~~l~~kl~~a~ 99 (426)
.++..++-|...+..+....++- +|+.+++.+..||.+..|
T Consensus 70 ~~~~dpd~v~~rqEa~eaAR~RmQEE~dakA~~~kEKq~q~E 111 (190)
T PF06936_consen 70 AAKKDPDVVVRRQEAMEAARRRMQEELDAKAEEYKEKQKQEE 111 (190)
T ss_dssp HHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777776665554 456777777777754433
No 312
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=47.03 E-value=78 Score=33.73 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=14.7
Q ss_pred cccchhhHHHHHHHHHHHHHHhhc
Q 014357 11 IRGSRIAIAIVIGVLVGCVFAFLF 34 (426)
Q Consensus 11 ~~~~~~~~~~~vgv~lg~~~a~~~ 34 (426)
...-.+++.|+||| .||.+||+-
T Consensus 214 ~KD~iLv~lili~v-~gcw~ay~Q 236 (575)
T KOG4403|consen 214 TKDFILVVLILIGV-GGCWFAYRQ 236 (575)
T ss_pred hhhHHHHHHHHHHh-hhhhhhhhh
Confidence 34445566666664 689999855
No 313
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=46.91 E-value=60 Score=36.16 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMV 111 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~ 111 (426)
|.++.|..++..++++.++++.++.++++++..+++...+.++++..
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555555554444444444444444433
No 314
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=46.83 E-value=44 Score=28.25 Aligned_cols=36 Identities=31% Similarity=0.415 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
..|++.|+.++..++++.++++++++.+...++..-
T Consensus 83 ~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 83 KKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478888888888888888888888888888776554
No 315
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=46.80 E-value=77 Score=29.07 Aligned_cols=62 Identities=18% Similarity=0.355 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccCCcccccccccCCccc
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPFGTVKALRTNPTVV 134 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~~~~~~~~~~t~p~~~ 134 (426)
-|+.+++..++..+.++.++..+++.++++.+..++...+.+.++...+.. ..|.| ..|.+.
T Consensus 83 keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~--~~~~~-------~~P~ll 144 (177)
T PF13870_consen 83 KEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQ--QGGLL-------GVPALL 144 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCC-------CCcHHH
Confidence 477888999999999999999999999999999999999999988887753 44555 446665
No 316
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=46.71 E-value=1.4e+02 Score=26.85 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc------ccCCccc-ccccccCCcccCC
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH------KVGPFGT-VKALRTNPTVVPD 136 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~------~~~~~~~-~~~~~t~p~~~p~ 136 (426)
.-+.+++++|..|.....+-..+-..|...+..+.+.-.+.++++..|--+- ...|.+. |..|++.|.+..-
T Consensus 40 ~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t~LPd~V~RL~~RPA~tga 118 (135)
T TIGR03495 40 AELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWADTPLPDDVIRLRQRPALTGA 118 (135)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhcCCCcHHHHHHhcCCCCCCh
Confidence 4456777777655544433333333344444444444445555555554332 3455554 4789988888643
No 317
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=46.62 E-value=84 Score=34.95 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 62 ESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 62 ~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
.|.+.++.|+.++.+++++.++++++++++.++......
T Consensus 212 ~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~ 250 (646)
T PRK05771 212 TPSELIREIKEELEEIEKERESLLEELKELAKKYLEELL 250 (646)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888999999999999999999999998887654433
No 318
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=46.57 E-value=36 Score=27.09 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=16.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
.+-+.|++.+.+|.+||..|.++++.
T Consensus 42 ~~~a~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 42 QENAALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666666666666666666654
No 319
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=46.53 E-value=49 Score=29.62 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNA--------------ELQKQVRQLTAKLRLAEQGKDQAQKQ 108 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~--------------~l~~~~~~l~~kl~~a~qg~~~a~~~ 108 (426)
+.++.|..+|...++..+ +-.+++++|.++++.+++...++-+.
T Consensus 69 ~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e 126 (144)
T PF11221_consen 69 ENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKE 126 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777765555443 22456667777777666666555544
No 320
>PRK14153 heat shock protein GrpE; Provisional
Probab=46.43 E-value=56 Score=31.06 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014357 59 SSCESPERVNMLKS--DIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQ 108 (426)
Q Consensus 59 ~~~~~~~r~~~l~~--~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~ 108 (426)
+|..|.+....|+. ++.+++.+.++|++|+.+|++++..+...-++..|.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR 69 (194)
T PRK14153 18 NSGSSAEEAEELKEEPEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKR 69 (194)
T ss_pred ccCCCHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666653 467788888889999999988876665555554443
No 321
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=46.17 E-value=42 Score=33.24 Aligned_cols=38 Identities=26% Similarity=0.390 Sum_probs=30.5
Q ss_pred HHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 64 PERVNMLKSDI---ASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 64 ~~r~~~l~~~~---~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
.||..+|.+|| ..|-+.-.-||.+.|+|++.|++-++.
T Consensus 146 IErnAfLESELdEke~llesvqRLkdEardlrqelavr~kq 186 (333)
T KOG1853|consen 146 IERNAFLESELDEKEVLLESVQRLKDEARDLRQELAVRTKQ 186 (333)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 68999999998 445667778999999999988876643
No 322
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=46.16 E-value=2.6e+02 Score=28.26 Aligned_cols=55 Identities=15% Similarity=-0.012 Sum_probs=35.1
Q ss_pred CCeEEEEEcCcchH-----HHHHHHHHHHHHcCCCcEEEEEeC--------HHHHHHHHHCCCCEEEeC
Q 014357 153 GKELIVALANSNVK-----SMLEVWSTNIKRVGITNYLVVALD--------DQTAEYCKTNDIPVYQRD 208 (426)
Q Consensus 153 d~~VIvt~~N~~~~-----d~~~Nwl~slkr~Gi~n~lVvAlD--------~~a~~~c~~~g~~c~~~~ 208 (426)
++.+|+|.+|++.. .-+...+....+.|.+ +-|++.+ ..+...+.+.|+||....
T Consensus 118 ~g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~g~~-~~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~ 185 (303)
T TIGR00524 118 DGDTVLTHCNAGALATSDYGTALGVIRSAWEDGKR-IRVIACETRPRNQGSRLTAWELMQDGIDVTLIT 185 (303)
T ss_pred CCCEEEEecCCccccccCcchHHHHHHHHHHcCCc-eEEEECCCCCccchHHHHHHHHHHCCCCEEEEC
Confidence 67789999998542 3455566666656654 3333333 335667778888887753
No 323
>PRK04406 hypothetical protein; Provisional
Probab=46.15 E-value=86 Score=25.17 Aligned_cols=49 Identities=16% Similarity=0.113 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
.++.+.|..|+.+.|=+.+-|.+|.+-+-.-.|..+.-++|+..|.++.
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778888888888888888887777666666666667766665554
No 324
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.11 E-value=61 Score=30.10 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccCCc
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPF 121 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~~~ 121 (426)
.|...++...+|++++++.++|+-.+|--.-|...++..-+..+-+.+|+|-=
T Consensus 122 el~eK~~~~~~Everi~~~ieE~v~eLe~~a~~lke~~~~i~~l~~~ik~~~~ 174 (181)
T COG4345 122 ELEEKLADAMEEVERIEKTIEELVSELESLANKLKEVTDVINSLVERIKQEHT 174 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 34455666677777777777777777665556777788778888888887753
No 325
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=45.90 E-value=1.1e+02 Score=24.40 Aligned_cols=48 Identities=25% Similarity=0.277 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMV 111 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~ 111 (426)
|.=...|+.|--++--|+-+||||+...++.|..|=-..|.|-.=..+
T Consensus 7 P~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViAr 54 (70)
T PF08606_consen 7 PSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIAR 54 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455678999999999999999999999999998887766666543333
No 326
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=45.89 E-value=62 Score=32.96 Aligned_cols=142 Identities=20% Similarity=0.181 Sum_probs=86.9
Q ss_pred HHHHHH-HHHHhhhhhHHHHHHHHhhcccccCCcccccccccCCcccCCCCCchhHHHHHHHhcC----CCeEEEEEcCc
Q 014357 89 RQLTAK-LRLAEQGKDQAQKQVMVLGEQHKVGPFGTVKALRTNPTVVPDESVNPRLAKILEEVAV----GKELIVALANS 163 (426)
Q Consensus 89 ~~l~~k-l~~a~qg~~~a~~~~~~~~~~~~~~~~~~~~~~~t~p~~~p~~~~~p~L~~lL~~~A~----d~~VIvt~~N~ 163 (426)
.+|++- ++..|+|.+. ..+|||-. +.....|.+.|.|. +.|+.+|. .+.=|.|=++.
T Consensus 113 ~~~ae~~v~ei~~Gi~g---------T~ikAGiI---k~~~~~~~iTp~Ee------k~lrAaA~A~~~Tg~Pi~tHt~~ 174 (316)
T COG1735 113 EELAEFVVKEIEEGIAG---------TGIKAGII---KEAGGSPAITPLEE------KSLRAAARAHKETGAPISTHTPA 174 (316)
T ss_pred HHHHHHHHHHHHhcccC---------Ccccccee---eeccCcccCCHHHH------HHHHHHHHHhhhcCCCeEEeccc
Confidence 334444 5566777764 44888865 44555566766552 34444443 45556665554
Q ss_pred chHHHHHHHHHHHHHcCC--CcEEEEEeC----HHHHH-HHHHCCCC-EEEeCCCCCcccccccCcchhhHhhHHHHHHH
Q 014357 164 NVKSMLEVWSTNIKRVGI--TNYLVVALD----DQTAE-YCKTNDIP-VYQRDPDEGIDSIARKGGNHAVSGLKFRVLRE 235 (426)
Q Consensus 164 ~~~d~~~Nwl~slkr~Gi--~n~lVvAlD----~~a~~-~c~~~g~~-c~~~~~~~g~d~~~gs~~f~~m~~~K~~~l~~ 235 (426)
+- +..--++-+..-|+ ++++|.=|| +..|+ .+..+|.- +|.+- |.+..+- -..|...+.+
T Consensus 175 gt--~g~eq~~il~~egvdl~~v~igH~d~n~dd~~y~~~l~~~Ga~l~fD~i---G~d~y~p-------d~~r~~~~~~ 242 (316)
T COG1735 175 GT--MGLEQLRILAEEGVDLRKVSIGHMDPNTDDVYYQKKLADRGAFLEFDRI---GKDKYYP-------DEDRIAPLLE 242 (316)
T ss_pred hh--hhHHHHHHHHHcCCChhHeeEeccCCCCChHHHHHHHHhcCceEEeccc---CccccCc-------HHHhhhhHHH
Confidence 43 77777788887886 588888888 23333 24444542 23211 2222111 1237889999
Q ss_pred HHhcCc--ceEEecccEEeecCccccc
Q 014357 236 FLQLDY--SVLLSDIDIVFLQNPFEYL 260 (426)
Q Consensus 236 vL~lGy--~VL~sDvDVVWlrnP~~~~ 260 (426)
+++.|| .+++|+-|+.|..+++.+.
T Consensus 243 l~~~gy~d~i~ls~d~~~~~~~~~~~~ 269 (316)
T COG1735 243 LVARGYADLILLSHDDICLSDDVFLKS 269 (316)
T ss_pred HHHhhHhhheecccchhhhhhhHHHHh
Confidence 999999 5999989999999887664
No 327
>PRK12704 phosphodiesterase; Provisional
Probab=45.73 E-value=53 Score=35.78 Aligned_cols=90 Identities=14% Similarity=0.196 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhhc----CCCcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHH-HHHHHHhHHHHHHHHH
Q 014357 16 IAIAIVIGVLVGCVFAFLF----PHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDI-ASLTEKNAELQKQVRQ 90 (426)
Q Consensus 16 ~~~~~~vgv~lg~~~a~~~----~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~-~~~~~~~~~l~~~~~~ 90 (426)
+.+.++||+++|+++++.. =...+..+......-......+. .+..+..+.+. ..+.+.++++.+++++
T Consensus 6 ~~~~~ivg~~iG~~ig~~i~k~~a~~~l~~Ae~eAe~I~keA~~eA------ke~~ke~~leaeeE~~~~R~Ele~e~~~ 79 (520)
T PRK12704 6 IILIALVALVVGAVIGYFVRKKIAEAKIKEAEEEAKRILEEAKKEA------EAIKKEALLEAKEEIHKLRNEFEKELRE 79 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhHHHHHHHH
Q 014357 91 LTAKLRLAEQGKDQAQKQVMV 111 (426)
Q Consensus 91 l~~kl~~a~qg~~~a~~~~~~ 111 (426)
.+++|+.-|+--++-++++..
T Consensus 80 ~e~~L~qrE~rL~~Ree~Le~ 100 (520)
T PRK12704 80 RRNELQKLEKRLLQKEENLDR 100 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 328
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=45.52 E-value=1.6e+02 Score=27.22 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQ 104 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~ 104 (426)
.+|-+....++...++...+..+...+.+++|+.|++...+
T Consensus 54 ~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ 94 (184)
T CHL00019 54 DNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADE 94 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777777777777777777777666654443
No 329
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=45.45 E-value=49 Score=36.28 Aligned_cols=19 Identities=26% Similarity=0.641 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHhhc
Q 014357 16 IAIAIVIGVLVGCVFAFLF 34 (426)
Q Consensus 16 ~~~~~~vgv~lg~~~a~~~ 34 (426)
|.|+|+|-|+++++++|++
T Consensus 1 iiI~iivi~l~~~~~~~~~ 19 (560)
T PF06160_consen 1 IIIGIIVIVLIIYIIGYIY 19 (560)
T ss_pred CeehHHHHHHHHHHHHHHH
Confidence 3566777778888888877
No 330
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=45.40 E-value=49 Score=31.79 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
--.+++.+++.++-||.+|..+|+++..|+..+|.-..
T Consensus 186 ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~ 223 (259)
T KOG4001|consen 186 EKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSE 223 (259)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34577888999999999999999999999888775443
No 331
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=45.37 E-value=49 Score=28.84 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
.++..+|+.++..++++.++|++..+.|.+++..
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~ 111 (127)
T TIGR02047 78 SDVNALLDEHISHVRARIIKLQALIEQLVDLRGR 111 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5777888899999999999988888888877543
No 332
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=45.34 E-value=82 Score=30.53 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=22.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 73 DIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
..++|++|++.|++|+.+.++.|+.+.
T Consensus 132 ~~~el~~ek~kL~~q~~e~~e~lr~L~ 158 (221)
T PF10376_consen 132 KQQELEEEKRKLEKQVDEKEEELRRLK 158 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 457788899999999999998877655
No 333
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=45.28 E-value=60 Score=26.97 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVR 89 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~ 89 (426)
.||..|+.++..+++||..|++|+.
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555543
No 334
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=45.25 E-value=1.4e+02 Score=24.19 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQ 108 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~ 108 (426)
+..+.|+..|....+|...|...+..|+.||...-.=...-+.+
T Consensus 5 ~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~ 48 (76)
T PF11544_consen 5 KQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQ 48 (76)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999998765443333333
No 335
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=45.02 E-value=2.1e+02 Score=26.24 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQ 108 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~ 108 (426)
.+|-.....++.+.++.+++..+...+.++.|+.|.+...+..++
T Consensus 40 e~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 40 NNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888889999999988888888888888888887666555433
No 336
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=44.94 E-value=36 Score=25.60 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 014357 71 KSDIASLTEKNAELQKQVRQLTA 93 (426)
Q Consensus 71 ~~~~~~~~~~~~~l~~~~~~l~~ 93 (426)
..+|..|+.||+.|+.|++-+++
T Consensus 28 ~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 28 RKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777777777777665543
No 337
>PF14645 Chibby: Chibby family
Probab=44.93 E-value=95 Score=27.04 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 61 CESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 61 ~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
....+..+.|+.+.++|+|||.-|+-|+.=|-.=|...
T Consensus 67 ~~~~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtet 104 (116)
T PF14645_consen 67 TADGEENQRLRKENQQLEEENNLLKLKIELLLDMLTET 104 (116)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457788899999999999999999988765554433
No 338
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=44.90 E-value=79 Score=31.59 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
+-++.+.+++.++++....|......|.+|+....+.-+.++|.+..|.
T Consensus 169 ~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 169 EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888888888889999999999999999999988775
No 339
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=44.71 E-value=58 Score=26.74 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
.+=...|+.+...++++...|+++.+++..++...+
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355688999999999999999999999999887665
No 340
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=44.67 E-value=1.6e+02 Score=28.02 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
.+|-+..+.++...++.+++..+...+.+++|..|++.
T Consensus 78 ~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~e 115 (205)
T PRK06231 78 NKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQ 115 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777788877877777777777777777776543
No 341
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=44.67 E-value=56 Score=28.72 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
.+|+.-|..+++.|++.-.-|++++.+|+++++.+-
T Consensus 76 ~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 76 EERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666666666666666666665544
No 342
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=44.60 E-value=48 Score=25.54 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=14.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 76 SLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 76 ~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
++|+..+.|.+++.+.+.+++.||.
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~ 53 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEA 53 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666655555555555555543
No 343
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=44.52 E-value=93 Score=26.77 Aligned_cols=60 Identities=12% Similarity=0.179 Sum_probs=44.3
Q ss_pred cCCCeEEEEEcCcch---HHHHHHHHHHHHHcCCCcEEE------EEeCHHHHHHHHHCCCCEEEeCCC
Q 014357 151 AVGKELIVALANSNV---KSMLEVWSTNIKRVGITNYLV------VALDDQTAEYCKTNDIPVYQRDPD 210 (426)
Q Consensus 151 A~d~~VIvt~~N~~~---~d~~~Nwl~slkr~Gi~n~lV------vAlD~~a~~~c~~~g~~c~~~~~~ 210 (426)
...+++++|+.-.-. ...+..|++.+.+.|+.-+.| -.+.+++.+.|.++++|.+.++.+
T Consensus 40 l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~~ 108 (123)
T PF07905_consen 40 LRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPWE 108 (123)
T ss_pred CCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCCC
Confidence 347888888653322 236889999998888644333 257899999999999999998754
No 344
>PRK00523 hypothetical protein; Provisional
Probab=44.19 E-value=21 Score=28.58 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 014357 17 AIAIVIGVLVGCVFAFLF 34 (426)
Q Consensus 17 ~~~~~vgv~lg~~~a~~~ 34 (426)
.+|++||+++||.+|--+
T Consensus 12 i~~li~G~~~Gffiark~ 29 (72)
T PRK00523 12 IPLLIVGGIIGYFVSKKM 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666666666554
No 345
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=44.17 E-value=8.5 Score=35.58 Aligned_cols=32 Identities=31% Similarity=0.372 Sum_probs=23.8
Q ss_pred HhhcCCCcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHHHH
Q 014357 31 AFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIAS 76 (426)
Q Consensus 31 a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~ 76 (426)
-||||+||.=-.+ +.+.||.+||..||.+|..
T Consensus 81 y~q~aDafVLVYs--------------~~d~eSf~rv~llKk~Idk 112 (198)
T KOG3883|consen 81 YFQFADAFVLVYS--------------PMDPESFQRVELLKKEIDK 112 (198)
T ss_pred HhccCceEEEEec--------------CCCHHHHHHHHHHHHHHhh
Confidence 3788888873332 2578999999999988865
No 346
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=44.17 E-value=47 Score=26.10 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
++.+..++..++..++.+.+++..+.++|.
T Consensus 15 l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~ 44 (71)
T PF10779_consen 15 LDNHEERIDKLEKRDAANEKDIKNLNKQLE 44 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 347
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=44.14 E-value=60 Score=35.26 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGE 114 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~ 114 (426)
+||..|.+++...+-|..-+.+|-+.|..+|..+|+.+..-..++..+..
T Consensus 420 ~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~ 469 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQ 469 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888899999999999999999999888776655554443
No 348
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=44.09 E-value=58 Score=35.68 Aligned_cols=12 Identities=33% Similarity=0.587 Sum_probs=6.7
Q ss_pred HHHHHHHHHhhc
Q 014357 23 GVLVGCVFAFLF 34 (426)
Q Consensus 23 gv~lg~~~a~~~ 34 (426)
|.+.|+=--|+|
T Consensus 99 g~V~G~S~pFqf 110 (546)
T PF07888_consen 99 GEVRGASTPFQF 110 (546)
T ss_pred ccEEEecCCccc
Confidence 445555556666
No 349
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=43.95 E-value=46 Score=27.88 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Q 014357 67 VNMLKSDIASLTE---KNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGE 114 (426)
Q Consensus 67 ~~~l~~~~~~~~~---~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~ 114 (426)
-+.+..++.++.. +.++|++++++|.+++...|....++++++..+-.
T Consensus 52 rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~ 102 (108)
T PF02403_consen 52 RNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLL 102 (108)
T ss_dssp HHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555554 36677778888888888888888888877766543
No 350
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=43.81 E-value=37 Score=31.71 Aligned_cols=30 Identities=33% Similarity=0.418 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 014357 62 ESPERVNMLKSDIASLTEKNAELQKQVRQL 91 (426)
Q Consensus 62 ~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l 91 (426)
+|.|-.+.|.-+++.|+++..+|++..+..
T Consensus 76 ~~~eel~~ld~~i~~l~ek~q~l~~t~s~v 105 (201)
T KOG4603|consen 76 VSDEELQVLDGKIVALTEKVQSLQQTCSYV 105 (201)
T ss_pred CChHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666544433
No 351
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=43.69 E-value=55 Score=29.00 Aligned_cols=34 Identities=24% Similarity=0.158 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 63 SPERVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
..++..+|+.++..++++.++|..+.+.|.+++.
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (135)
T PRK10227 77 SADVKRRTLEKVAEIERHIEELQSMRDQLLALAN 110 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888888888888888888888877664
No 352
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=43.43 E-value=1.3e+02 Score=32.08 Aligned_cols=19 Identities=32% Similarity=0.446 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHhhcC
Q 014357 17 AIAIVIGVLVGCVFAFLFP 35 (426)
Q Consensus 17 ~~~~~vgv~lg~~~a~~~~ 35 (426)
+-.|-..|+++++.-|+||
T Consensus 6 ~qlInFlIl~~lL~kfl~~ 24 (445)
T PRK13428 6 GQLIGFAVIVFLVWRFVVP 24 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345566677888888873
No 353
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=43.43 E-value=38 Score=29.27 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
-.||+++.++=+||..|+=+-.-|+++|..
T Consensus 25 ~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 25 GGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 344444455555555555555555544433
No 354
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=43.35 E-value=80 Score=31.37 Aligned_cols=30 Identities=37% Similarity=0.661 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
++.|..++.+|..+|+.|.+++.+|...++
T Consensus 225 ~~~l~~el~~l~~~~~~Le~~l~~le~~~~ 254 (312)
T PF00038_consen 225 IQSLQAELESLRAKNASLERQLRELEQRLD 254 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhhhccccchhhhhhhHHHHHHHHH
Confidence 344455555555555555555555544443
No 355
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=43.24 E-value=38 Score=26.23 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=26.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
+||..+=.|+-|||.+|-+|+|.|+..+.+..
T Consensus 3 ~ELr~VL~ERNeLK~~v~~leEEL~~yk~~~~ 34 (60)
T PF11461_consen 3 QELREVLQERNELKARVFLLEEELAYYKSELL 34 (60)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 46777778888999999999999998875543
No 356
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=43.16 E-value=2.7e+02 Score=27.20 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=24.9
Q ss_pred CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEeCH-------HHHHHHHHCCCCEEE
Q 014357 153 GKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDD-------QTAEYCKTNDIPVYQ 206 (426)
Q Consensus 153 d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAlD~-------~a~~~c~~~g~~c~~ 206 (426)
|+.+|+|..++. .+..++.+.++.|- ++-|+++|. .+.+.+.+.|++|..
T Consensus 107 ~~~~ILT~~~S~---~v~~~l~~a~~~~~-~~~V~v~es~P~~eG~~~a~~L~~~gi~v~~ 163 (282)
T PF01008_consen 107 DGDTILTHGYSS---TVERFLLSAKKKGK-KFRVIVLESRPYNEGRLMAKELAEAGIPVTL 163 (282)
T ss_dssp TTEEEEEES--S---HHHHHHHHHHHTTE-EEEEEEE--TTTTHHHTHHHHHHHTT-EEEE
T ss_pred CCeEEEEeCCch---HHHHHHHHHHHcCC-eEEEEEccCCcchhhhhHHHHhhhcceeEEE
Confidence 677888877665 35666666655553 333333332 233444555555554
No 357
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=43.09 E-value=53 Score=24.23 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
.|.+.+...+++|++-..+++||++=++
T Consensus 4 eL~~~l~~~e~~~~~k~~~v~eLe~YiD 31 (48)
T PF09457_consen 4 ELISLLKKQEEENARKDSRVRELEDYID 31 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888889999999999999987644
No 358
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=42.97 E-value=56 Score=29.12 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=16.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhhH
Q 014357 75 ASLTEKNAELQKQVRQLTAKLRLAEQGKDQ 104 (426)
Q Consensus 75 ~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~ 104 (426)
..||.+|.+|..||.-|.+.+..+.+.-+.
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da 106 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDA 106 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666665555555444443
No 359
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=42.62 E-value=2.7e+02 Score=28.65 Aligned_cols=17 Identities=6% Similarity=0.026 Sum_probs=12.2
Q ss_pred HHHHHHHCCCCEEEeCC
Q 014357 193 TAEYCKTNDIPVYQRDP 209 (426)
Q Consensus 193 a~~~c~~~g~~c~~~~~ 209 (426)
..+.|.+.++|++.+-.
T Consensus 146 lm~lA~~f~lPIItlvD 162 (322)
T CHL00198 146 LMKHANKFGLPILTFID 162 (322)
T ss_pred HHHHHHHcCCCEEEEEe
Confidence 34578888999877643
No 360
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=42.56 E-value=92 Score=28.45 Aligned_cols=48 Identities=29% Similarity=0.423 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 014357 62 ESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQV 109 (426)
Q Consensus 62 ~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~ 109 (426)
.+..-+..++.++..|.+.-++|.+++.++..++..+.+--..+++++
T Consensus 64 v~~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~ 111 (152)
T PF07321_consen 64 VSLKELEKWQQQVASLREREAELEQQLAEAEEQLEQERQALEEARKQL 111 (152)
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777777777777777777666666666555553
No 361
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=42.33 E-value=47 Score=33.96 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
.+++.|+.+++.+..|..++++|++++++++....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677888888888888888888888888875443
No 362
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=42.25 E-value=51 Score=33.52 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
+..|+..++.|++||..|+.++..|...-...|
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~E 194 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYE 194 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc
Confidence 689999999999999999999999986544433
No 363
>PRK14011 prefoldin subunit alpha; Provisional
Probab=42.12 E-value=83 Score=28.46 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
.|++.|++....|.+..+++.+++++|...|+..
T Consensus 95 ~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k 128 (144)
T PRK14011 95 KSVEELDKTKKEGNKKIEELNKEITKLRKELEKR 128 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888888888665543
No 364
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=42.10 E-value=1e+02 Score=29.00 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLT 92 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~ 92 (426)
..++..|++++..++++.++|++++.++.
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888887774
No 365
>PF10884 DUF2683: Protein of unknown function (DUF2683); InterPro: IPR020271 This entry contains proteins with no known function.
Probab=41.97 E-value=26 Score=28.54 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=41.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccCCccccccccc
Q 014357 76 SLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPFGTVKALRT 129 (426)
Q Consensus 76 ~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~~~~~~~~~~t 129 (426)
.|..|-+.+-+-+.|.++++-.. +=+.+==|++....+.-+.|||++|+.||.
T Consensus 24 ~lkdks~aId~~ieeye~~~lEp-ElkPEfVeki~~i~k~~~~i~i~svd~LRk 76 (80)
T PF10884_consen 24 NLKDKSAAIDKIIEEYEEKILEP-ELKPEFVEKIKKIMKGKKFIPIGSVDELRK 76 (80)
T ss_pred CCchHHHHHHHHHHHHHHHhccc-ccCHHHHHHHHHHHhcccCcCcCcHHHHHH
Confidence 45677778888888888887655 445555678888888899999999999884
No 366
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=41.96 E-value=69 Score=31.55 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHhhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAK-LRLAEQG 101 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k-l~~a~qg 101 (426)
.|...|+.|+.+..+++.+|+.|+..|+.- +.|.|+-
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888776 7777764
No 367
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=41.88 E-value=69 Score=34.61 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGE 114 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~ 114 (426)
+..+.+-+....++.++|..+.++|+.+++.+++....+++++..+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345666667777788888888888888888888888888888877765
No 368
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=41.79 E-value=86 Score=30.53 Aligned_cols=48 Identities=15% Similarity=0.303 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMV 111 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~ 111 (426)
...+..++.++.+++++++.|++++.++++++....+.-.+..+++..
T Consensus 55 ~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 55 LLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666665555555555555444444444333
No 369
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]
Probab=41.73 E-value=54 Score=33.98 Aligned_cols=43 Identities=26% Similarity=0.528 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhH
Q 014357 62 ESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQ 104 (426)
Q Consensus 62 ~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~ 104 (426)
+.+||.+-|++|+..|+.+-.+|-++++.+++-|++..|-.++
T Consensus 141 ~~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~lted~~n 183 (354)
T KOG2577|consen 141 GVPERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRLLTEDVEN 183 (354)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhc
Confidence 5789999999999999999999999999999999888876653
No 370
>PRK00295 hypothetical protein; Provisional
Probab=41.72 E-value=94 Score=24.39 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Q 014357 71 KSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHK 117 (426)
Q Consensus 71 ~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~ 117 (426)
...|..|+.+.|-+.+-|.+|.+-+-.-.|..+.-++|+..|.++.+
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544444444444455555544443
No 371
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=41.70 E-value=52 Score=36.19 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
-||.+=.+|..|+++|+.|.+++++++..|..++.+
T Consensus 371 qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 371 QINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555666777777777777777666666544
No 372
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=41.66 E-value=67 Score=27.88 Aligned_cols=34 Identities=26% Similarity=0.212 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 63 SPERVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
..++..+|+.++..++++.++|++..+.|..++.
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (127)
T TIGR02044 77 SADVKARTLEKVAEIERKISELQSMRDQLEALAQ 110 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677778888888888888888887777776653
No 373
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=41.64 E-value=1.1e+02 Score=28.66 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=8.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q 014357 75 ASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 75 ~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
..++.+++.|+.++++|.+.|.
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ 140 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELK 140 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 374
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=41.59 E-value=1.3e+02 Score=26.32 Aligned_cols=50 Identities=14% Similarity=0.290 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHhhcc
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE---QGKDQAQKQVMVLGEQ 115 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~---qg~~~a~~~~~~~~~~ 115 (426)
-+..|+.+++.|+.++++|..++-.|+.+....+ +...+.++++..+...
T Consensus 31 E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 31 ELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777654443 2233333444444443
No 375
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=41.56 E-value=44 Score=30.59 Aligned_cols=47 Identities=15% Similarity=0.180 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 014357 61 CESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQK 107 (426)
Q Consensus 61 ~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~ 107 (426)
-.++|-.+.|+.||..|..++.++.+++.+-.+.=++.|.+.-+|-|
T Consensus 7 ~lT~eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak 53 (158)
T PRK05892 7 GLAPAARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRA 53 (158)
T ss_pred ccCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHH
Confidence 45788999999999999989999988888877776676665544443
No 376
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=41.49 E-value=1.1e+02 Score=32.15 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=7.1
Q ss_pred CCCCCchHHHHH
Q 014357 330 KEKAWDQAVFNE 341 (426)
Q Consensus 330 ~~~~~DQ~afN~ 341 (426)
.|...|+.+|+.
T Consensus 365 lP~pP~~~vye~ 376 (387)
T PRK09510 365 IPKPPSQEVYEK 376 (387)
T ss_pred CCCCCchHHHHh
Confidence 455556666654
No 377
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=41.40 E-value=85 Score=29.35 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
.++..|..|++.+-+++++|..++.+++.+++..+
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~ 108 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELE 108 (194)
T ss_dssp -----------------------------------
T ss_pred cccccccccccccccccccccccccccccccchhh
Confidence 44555555555555555555555444444444443
No 378
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=41.23 E-value=47 Score=24.26 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
.|+..---+++|.+++-.|+.||++|-
T Consensus 9 lLqe~~d~IEqkiedid~qIaeLe~KR 35 (46)
T PF08946_consen 9 LLQEHYDNIEQKIEDIDEQIAELEAKR 35 (46)
T ss_dssp ------THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHH
Confidence 345555678888888888888888873
No 379
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=41.07 E-value=42 Score=28.32 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLT 92 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~ 92 (426)
+..|+..+..++++|+.|.++|.+++
T Consensus 82 ~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 82 REQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566666666667766666666654
No 380
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=40.85 E-value=94 Score=34.86 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
+.++.++.++.+|+.+-+++++|...|++.++...
T Consensus 378 ~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~ 412 (656)
T PRK06975 378 ASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLS 412 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666666666666666666666554433
No 381
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=40.84 E-value=50 Score=36.54 Aligned_cols=35 Identities=26% Similarity=0.533 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
.|+..|...+..|+++|.+|+.++.+|+..+-..+
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~ 456 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLE 456 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555444444444443333333
No 382
>cd00225 API3 Ascaris pepsin inhibitor-3 (API3); protein inhibitor that reversibly inhibits aspartic proteinase cathepsin E, and gastric enzymes pepsin and gastricsin.
Probab=40.84 E-value=11 Score=34.21 Aligned_cols=64 Identities=25% Similarity=0.517 Sum_probs=45.6
Q ss_pred HHHHHHHHH--hhcCCCcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 23 GVLVGCVFA--FLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 23 gv~lg~~~a--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
|--.||+.. .||-|||+-+.- .++--+.|.+-+....+-.++++.-++|-+++++++.+
T Consensus 9 ggs~gCvVt~N~Lfang~~lReL-------------------t~~Eq~el~~y~~d~~~yK~~~k~~l~er~~~~~~~~~ 69 (159)
T cd00225 9 GGSAGCVVTDNVLFANGFPLREL-------------------TPDEQQELAQYVEDVADYKEEVKQALKERQEGLKLRRA 69 (159)
T ss_pred CCceeEEEECCEEEecCceeeeC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 334566664 677777764422 13336777777788888888888888899999999998
Q ss_pred hhhHH
Q 014357 101 GKDQA 105 (426)
Q Consensus 101 g~~~a 105 (426)
|+...
T Consensus 70 ~~~~~ 74 (159)
T cd00225 70 GKKKK 74 (159)
T ss_pred ccccc
Confidence 87744
No 383
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=40.68 E-value=85 Score=26.70 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
.+++..++.+--++.++|.||..++.+|+++..
T Consensus 16 ~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~ 48 (106)
T PF05837_consen 16 QEKLSDVEKKRLRLKRRNQELAQELLELAEKQK 48 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567777777777777788888777777777643
No 384
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=40.64 E-value=85 Score=31.37 Aligned_cols=27 Identities=11% Similarity=0.287 Sum_probs=11.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 74 IASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 74 ~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
+++.+++-+|++.++.|.+++|..+|.
T Consensus 216 L~~~Eke~~e~~~~i~e~~~rl~~l~~ 242 (269)
T PF05278_consen 216 LKQKEKEVKEIKERITEMKGRLGELEM 242 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 385
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=40.63 E-value=85 Score=29.68 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQV 109 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~ 109 (426)
.+.+..|+.++..++..-+.|+.++.+|+.|++.++..++...-+.
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777778888888888888887777776655433
No 386
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=40.56 E-value=1.3e+02 Score=28.11 Aligned_cols=60 Identities=23% Similarity=0.209 Sum_probs=29.3
Q ss_pred hhHHHHHHHhcCCCe-EEEEEcCcc--hHHHHHHHHHHHHHcCC-CcEEEEEeCHHHHHHHHHC
Q 014357 141 PRLAKILEEVAVGKE-LIVALANSN--VKSMLEVWSTNIKRVGI-TNYLVVALDDQTAEYCKTN 200 (426)
Q Consensus 141 p~L~~lL~~~A~d~~-VIvt~~N~~--~~d~~~Nwl~slkr~Gi-~n~lVvAlD~~a~~~c~~~ 200 (426)
|.|+++|......+. +.+=.=... ...++...+.-+++.|+ ++++|.+.|.+..+.++++
T Consensus 83 ptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~v~v~Sf~~~~l~~~~~~ 146 (220)
T cd08579 83 PSLDEYLALAKGLKQKLLIELKPHGHDSPDLVEKFVKLYKQNLIENQHQVHSLDYRVIEKVKKL 146 (220)
T ss_pred CCHHHHHHHhhccCCeEEEEECCCCCCCHHHHHHHHHHHHHcCCCcCeEEEeCCHHHHHHHHHH
Confidence 456666655443222 222222111 23445555555555554 4566666666666666554
No 387
>PF08738 Gon7: Gon7 family; InterPro: IPR014849 In Saccharomyces cerevisiae Gon7 is a member of the KEOPS protein complex. A protein complex proposed to be involved in transcription and promoting telomere uncapping and telomere elongation [].
Probab=40.54 E-value=76 Score=27.18 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhhh
Q 014357 60 SCESPERVNMLKSDIASLTEKNAELQKQVR-QLTAKLRLAEQG 101 (426)
Q Consensus 60 ~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~-~l~~kl~~a~qg 101 (426)
+..+..|. .-|.+|+.....|+.||| .|++|+...+..
T Consensus 46 d~~s~~K~----t~L~~LR~~lt~lQddIN~fLTeRMe~dK~~ 84 (103)
T PF08738_consen 46 DKPSEDKD----TYLSELRAQLTTLQDDINEFLTERMEEDKAR 84 (103)
T ss_pred CCCchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33455565 667888999999999999 899998766543
No 388
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=40.50 E-value=80 Score=30.40 Aligned_cols=85 Identities=16% Similarity=0.256 Sum_probs=47.7
Q ss_pred CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEeCHHH-----HHHHHHCCCCEEEeCCCCCcccccccCcchhhHh
Q 014357 153 GKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDDQT-----AEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSG 227 (426)
Q Consensus 153 d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAlD~~a-----~~~c~~~g~~c~~~~~~~g~d~~~gs~~f~~m~~ 227 (426)
+=.++...++....+....+.+-+++++++.++.++++-+- -+.|.+.|+-++. |- |+ .
T Consensus 58 gipl~~~~~~g~~~~~~~~l~~~l~~~~v~~vv~GdI~~~~~r~~~e~vc~~lGl~~~~--PL------W~--------~ 121 (218)
T PF01902_consen 58 GIPLIEIPTSGDEEDYVEDLKEALKELKVEAVVFGDIDSEYQRNWVERVCERLGLEAVF--PL------WG--------R 121 (218)
T ss_dssp T--EEEEEE---CCCHHHHHHHHHCTC--SEEE--TTS-HHHHHHHHHHHHHCT-EEE---TT------TT---------
T ss_pred CCCEEEEEccCccchhhHHHHHHHHHcCCCEEEECcCCcHHHHHHHHHHHHHcCCEEEe--cc------cC--------C
Confidence 44555555542233445666777788889999999998542 2358888987765 32 21 1
Q ss_pred hHHHHHHHHHhcCcceEEecccEEee
Q 014357 228 LKFRVLREFLQLDYSVLLSDIDIVFL 253 (426)
Q Consensus 228 ~K~~~l~~vL~lGy~VL~sDvDVVWl 253 (426)
.+-.++.++++.|+..+++=+|.-.|
T Consensus 122 d~~~ll~e~i~~Gf~aiIv~V~~~~L 147 (218)
T PF01902_consen 122 DREELLREFIESGFEAIIVKVDADGL 147 (218)
T ss_dssp -HHHHHHHHHHTT-EEEEEEEESTT-
T ss_pred CHHHHHHHHHHCCCeEEEEEEeccCC
Confidence 25579999999999999887765433
No 389
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=40.34 E-value=3.2e+02 Score=28.17 Aligned_cols=53 Identities=11% Similarity=-0.056 Sum_probs=30.0
Q ss_pred EEEEEcCcch-----HHHHHHHHHHHHHcCCCcEEEEEeCH-------HHHHHHHHCCCCEEEeC
Q 014357 156 LIVALANSNV-----KSMLEVWSTNIKRVGITNYLVVALDD-------QTAEYCKTNDIPVYQRD 208 (426)
Q Consensus 156 VIvt~~N~~~-----~d~~~Nwl~slkr~Gi~n~lVvAlD~-------~a~~~c~~~g~~c~~~~ 208 (426)
+|+|-+|++. ..-+...+.+..+.|..--++++... .+...+.+.|+||....
T Consensus 149 ~ILThcnsg~lat~~~gtal~~l~~A~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~ 213 (331)
T TIGR00512 149 RVLTHCNTGSLATAGYGTALGVIRSAHEKGRLEHVYADETRPRLQGARLTAWELVQEGIPATLIT 213 (331)
T ss_pred eEEeecCCccccccccchHHHHHHHHHHcCCceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEc
Confidence 7888888753 12344566666666643333333211 23455777788887753
No 390
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=40.17 E-value=73 Score=27.06 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 63 SPERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
.+++.+.|+.++..++++.++|++..+.|..+|
T Consensus 79 ~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~l 111 (112)
T cd01282 79 CPDLLAVLRRELARIDRQIADLTRSRDRLDAYL 111 (112)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367778888888888888888887777776654
No 391
>PRK14158 heat shock protein GrpE; Provisional
Probab=40.16 E-value=50 Score=31.36 Aligned_cols=37 Identities=14% Similarity=0.021 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
...++..++++.++|++|+.+|++++..+...-++..
T Consensus 38 ~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~R 74 (194)
T PRK14158 38 AADRIKELEEALAAKEAEAAANWDKYLRERADLENYR 74 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666666666666555544444444
No 392
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=40.09 E-value=1.8e+02 Score=34.82 Aligned_cols=12 Identities=33% Similarity=0.481 Sum_probs=5.5
Q ss_pred ccCCcccccccc
Q 014357 117 KVGPFGTVKALR 128 (426)
Q Consensus 117 ~~~~~~~~~~~~ 128 (426)
-.|.+|+|-.+-
T Consensus 514 ~~Gv~G~v~~li 525 (1163)
T COG1196 514 LPGVYGPVAELI 525 (1163)
T ss_pred CCCccchHHHhc
Confidence 345555444443
No 393
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=40.03 E-value=2.2e+02 Score=27.85 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=65.9
Q ss_pred ccCCCCCchhHHHHHHH---hcC--CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEeCHH--HHHHHHHCCCCEE
Q 014357 133 VVPDESVNPRLAKILEE---VAV--GKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDDQ--TAEYCKTNDIPVY 205 (426)
Q Consensus 133 ~~p~~~~~p~L~~lL~~---~A~--d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAlD~~--a~~~c~~~g~~c~ 205 (426)
+.|+-+ ||=..+++.. .|. +-.+++..++..- +.- ..++.+.+.+++-+++...... .+..+.+.++|++
T Consensus 7 ivp~~~-npff~~ii~gIe~~a~~~Gy~l~l~~t~~~~-~~e-~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~~~iPvV 83 (279)
T PF00532_consen 7 IVPDIS-NPFFAEIIRGIEQEAREHGYQLLLCNTGDDE-EKE-EYIELLLQRRVDGIILASSENDDEELRRLIKSGIPVV 83 (279)
T ss_dssp EESSST-SHHHHHHHHHHHHHHHHTTCEEEEEEETTTH-HHH-HHHHHHHHTTSSEEEEESSSCTCHHHHHHHHTTSEEE
T ss_pred EECCCC-CcHHHHHHHHHHHHHHHcCCEEEEecCCCch-HHH-HHHHHHHhcCCCEEEEecccCChHHHHHHHHcCCCEE
Confidence 445543 5555554444 443 4467676666553 333 8899998889999988876544 5555666699998
Q ss_pred EeCCCC----CcccccccCcchhhHhhHHHHHHHHHhcCcceEEecccEEeecCccc
Q 014357 206 QRDPDE----GIDSIARKGGNHAVSGLKFRVLREFLQLDYSVLLSDIDIVFLQNPFE 258 (426)
Q Consensus 206 ~~~~~~----g~d~~~gs~~f~~m~~~K~~~l~~vL~lGy~VL~sDvDVVWlrnP~~ 258 (426)
.++... +.+..+ . ++...+ + ...+.+++.|+.=- |.|+..|..
T Consensus 84 ~~~~~~~~~~~~~~V~-~-D~~~a~--~-~a~~~Li~~Gh~~~-----I~~i~~~~~ 130 (279)
T PF00532_consen 84 LIDRYIDNPEGVPSVY-I-DNYEAG--Y-EATEYLIKKGHRRP-----IAFIGGPED 130 (279)
T ss_dssp EESS-SCTTCTSCEEE-E-EHHHHH--H-HHHHHHHHTTCCST-----EEEEEESTT
T ss_pred EEEeccCCcccCCEEE-E-cchHHH--H-HHHHHHHhcccCCe-----EEEEecCcc
Confidence 877542 122221 1 111111 2 57889999999420 355555543
No 394
>PTZ00464 SNF-7-like protein; Provisional
Probab=39.75 E-value=1e+02 Score=29.70 Aligned_cols=30 Identities=3% Similarity=0.158 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
+++..|.+.+.+|++|...|.+|+..+++.
T Consensus 18 d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~ 47 (211)
T PTZ00464 18 DASKRIGGRSEVVDARINKIDAELMKLKEQ 47 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555444444444433
No 395
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=39.51 E-value=88 Score=33.13 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
.+++-.|-.+..++..+.++|++|.|+++.++..
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666655544
No 396
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=39.43 E-value=84 Score=27.09 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhhc
Q 014357 22 IGVLVGCVFAFLF 34 (426)
Q Consensus 22 vgv~lg~~~a~~~ 34 (426)
|+.+=-++-.|.|
T Consensus 29 i~~Lq~~i~~vtf 41 (118)
T PF13815_consen 29 IDTLQENIENVTF 41 (118)
T ss_pred HHHHHHHHHhcce
Confidence 3334444444444
No 397
>PRK00846 hypothetical protein; Provisional
Probab=39.39 E-value=1.3e+02 Score=24.39 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccc
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKV 118 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~ 118 (426)
-|-+++...|..|+.+.|-...=|.+|.+-+....+..+.-+.|+..+.+..+.
T Consensus 6 ~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 6 LRDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788888888888777778888777777666666677777776665554
No 398
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=39.34 E-value=76 Score=28.21 Aligned_cols=36 Identities=25% Similarity=0.211 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
.++...|..++..++++.++|++..+.|..++....
T Consensus 80 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 115 (140)
T PRK09514 80 QEVKGIVDEKLAEVEAKIAELQHMRRSLQRLNDACC 115 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567778888888888888888777777777665543
No 399
>PRK00736 hypothetical protein; Provisional
Probab=39.27 E-value=1.1e+02 Score=24.06 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
|-..+.+-.++.+.|++|++-|.+||
T Consensus 24 Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 24 LSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444433
No 400
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=39.20 E-value=42 Score=27.67 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLT 92 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~ 92 (426)
++...|+.+|..+++|+.||++-+.-++
T Consensus 19 k~lE~L~~eL~~it~ERnELr~~L~~~~ 46 (84)
T PF04822_consen 19 KELERLKFELQKITKERNELRDILALYT 46 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677888999999999988887766444
No 401
>PLN02678 seryl-tRNA synthetase
Probab=39.18 E-value=89 Score=33.48 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
+++-.|-.+..++..+.++|++|.|+++.++
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I 63 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEV 63 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444433
No 402
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=38.90 E-value=83 Score=28.64 Aligned_cols=50 Identities=14% Similarity=0.302 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHhhc
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLA--EQGKDQAQKQVMVLGE 114 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a--~qg~~~a~~~~~~~~~ 114 (426)
..+..|+.++.+|+.++..|+.+++.|+..+-.. .....+-++++..+.+
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~ 130 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEE 130 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4588899999999999888888888777664222 2333344444444443
No 403
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=38.84 E-value=1.1e+02 Score=29.94 Aligned_cols=53 Identities=15% Similarity=0.317 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
..++..++.++..|.++...-.+++++|+++|..|......|.+.+..+....
T Consensus 81 e~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~~~ 133 (246)
T PF00769_consen 81 EQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVMSAP 133 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45778888888999999999999999999999999988888877665544433
No 404
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=38.50 E-value=1.1e+02 Score=27.09 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 014357 65 ERVNMLKSDIASLTEKNAEL 84 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l 84 (426)
.+.+.|..|+..|..+=++-
T Consensus 27 ~~l~~LEae~q~L~~kE~~r 46 (126)
T PF09403_consen 27 SELNQLEAEYQQLEQKEEAR 46 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666777776665544333
No 405
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=38.41 E-value=85 Score=29.81 Aligned_cols=49 Identities=29% Similarity=0.427 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 65 ERVNMLKSDIASLTEK-------NAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~-------~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
+=|+.||.|+..+.++ -+++..+-+.|++-|..|++...+.++++..+.
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~ 82 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE 82 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555544443 334444445555556666666666665555444
No 406
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=38.38 E-value=44 Score=27.17 Aligned_cols=23 Identities=43% Similarity=0.614 Sum_probs=18.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 014357 74 IASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 74 ~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
+-.|.++.++|++|+.+|+++|+
T Consensus 67 ~l~l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 67 ILELEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34588888888888888888876
No 407
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=38.33 E-value=1e+02 Score=29.25 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
..|..+-..+++..++=+++.+.|+.-|+.+.
T Consensus 108 ~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~ 139 (192)
T PF11180_consen 108 AQLEAQKAQLERLIAESEARANRLQADLQIAR 139 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 408
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=38.24 E-value=46 Score=35.17 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
..|...+..+....+++.+|..+|+++++.+.+..+
T Consensus 195 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 230 (471)
T PF04791_consen 195 YFRAAKLEDEAAEAKEKLDDIIEKLRRLRRILRDVE 230 (471)
T ss_pred cchhhhhcchhHHHHHHHHHHHHHHHHHHhhhcccH
Confidence 566666777777777777777777776654444333
No 409
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=38.20 E-value=60 Score=28.10 Aligned_cols=31 Identities=13% Similarity=0.425 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
...+..+++++..|+.+|..|+.|++.|+..
T Consensus 56 ~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 56 QRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5566699999999999999999999999988
No 410
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=38.17 E-value=72 Score=31.85 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQ 108 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~ 108 (426)
.++.+..+.++..+++++. +++.|..+|++.++...++|+|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~---~~~~e~~~~~~e~~~kaeeaqK~ 55 (306)
T PF04888_consen 14 EESLKSKKEQIERASEAQE---KKAEEKAEEIEEAQEKAEEAQKA 55 (306)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677777777777777775 77777777777777666777643
No 411
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=38.16 E-value=73 Score=30.25 Aligned_cols=56 Identities=29% Similarity=0.369 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Q 014357 62 ESPERVNMLKSDIAS-------LTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHK 117 (426)
Q Consensus 62 ~~~~r~~~l~~~~~~-------~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~ 117 (426)
++.+|.+-|..++.. ...+-.+.++|+..|...-+-|...-++.+.|+..|..+..
T Consensus 123 ~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 123 ESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556777777777733 23333445555555555555555555555556655555443
No 412
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=38.11 E-value=1e+02 Score=29.80 Aligned_cols=41 Identities=32% Similarity=0.400 Sum_probs=29.4
Q ss_pred HHHHHHH-HhHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 73 DIASLTE-KNAELQK---QVRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 73 ~~~~~~~-~~~~l~~---~~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
||.++.- -++|+|| ||..|..=|..|-|..|+|+.|+..|-
T Consensus 16 ELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 16 ELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444322 3566665 667788889999999999999876555
No 413
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=37.86 E-value=40 Score=34.54 Aligned_cols=48 Identities=23% Similarity=0.319 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVL 112 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~ 112 (426)
+++..++.++...+++.++.++++.+++++|...+...+.+.++...|
T Consensus 221 ~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l 268 (344)
T PF12777_consen 221 QKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQEL 268 (344)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555666666555555555555444443333
No 414
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=37.86 E-value=79 Score=26.85 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
+=+..|+..+..++.+...|.|+...|++++...++.-.
T Consensus 67 e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 67 EAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344777777888888888888888888877776665443
No 415
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=37.86 E-value=2.7e+02 Score=24.38 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
.+|-+....++...++...+..+...+..++|..|++
T Consensus 25 ~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ 61 (147)
T TIGR01144 25 ETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKD 61 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666666653
No 416
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=37.80 E-value=2.8e+02 Score=26.39 Aligned_cols=72 Identities=15% Similarity=0.257 Sum_probs=47.1
Q ss_pred cchHHHHHHHHHHHHHcCCCcEEEEEeCHHH-----HHHHHHCCCCEEEeCCCCCcccccccCcchhhHhhHHHHHHHHH
Q 014357 163 SNVKSMLEVWSTNIKRVGITNYLVVALDDQT-----AEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGLKFRVLREFL 237 (426)
Q Consensus 163 ~~~~d~~~Nwl~slkr~Gi~n~lVvAlD~~a-----~~~c~~~g~~c~~~~~~~g~d~~~gs~~f~~m~~~K~~~l~~vL 237 (426)
..+.+-+..-+..+++.|++.++.++.+.+- ...|.+.|++++. |- +.+.|-.++..++
T Consensus 69 ~~~~~~l~~~l~~~~~~g~~~vv~G~i~sd~~~~~~e~v~~~~gl~~~~--PL--------------w~~~~~el~~~~~ 132 (218)
T TIGR03679 69 EKEVEDLKGALKELKREGVEGIVTGAIASRYQKSRIERICEELGLKVFA--PL--------------WGRDQEEYLRELV 132 (218)
T ss_pred hHHHHHHHHHHHHHHHcCCCEEEECCcccHhHHHHHHHHHHhCCCeEEe--eh--------------hcCCHHHHHHHHH
Confidence 3344434445555555589888888776532 2356666776654 21 1234788999999
Q ss_pred hcCcceEEecccE
Q 014357 238 QLDYSVLLSDIDI 250 (426)
Q Consensus 238 ~lGy~VL~sDvDV 250 (426)
+.|+..+++-++.
T Consensus 133 ~~G~~~~i~~v~~ 145 (218)
T TIGR03679 133 ERGFRFIIVSVSA 145 (218)
T ss_pred HCCCEEEEEEEec
Confidence 9999999977765
No 417
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=37.73 E-value=18 Score=32.59 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=17.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQ 108 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~ 108 (426)
.++..++++.++|++|+.+|.+++..+.+.-++..+.
T Consensus 11 ~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r 47 (165)
T PF01025_consen 11 EEIEELEEELEELEKEIEELKERLLRLQAEFENYRKR 47 (165)
T ss_dssp HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555544444444444433
No 418
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=37.53 E-value=91 Score=34.74 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHhh
Q 014357 65 ERVNMLKSDIASLTE-------KNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~-------~~~~l~~~~~~l~~kl~~a~q 100 (426)
+++..|+.++..++. +.+++++++.++.++++.+++
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555444443 444444444444555544444
No 419
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=37.50 E-value=2.4e+02 Score=26.25 Aligned_cols=93 Identities=27% Similarity=0.320 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeCH--HHHHHHHH-CCCCEEEeCCCCCcccccccCcchhhHhhHHHHHHHHHhcCcce
Q 014357 167 SMLEVWSTNIKRVGITNYLVVALDD--QTAEYCKT-NDIPVYQRDPDEGIDSIARKGGNHAVSGLKFRVLREFLQLDYSV 243 (426)
Q Consensus 167 d~~~Nwl~slkr~Gi~n~lVvAlD~--~a~~~c~~-~g~~c~~~~~~~g~d~~~gs~~f~~m~~~K~~~l~~vL~lGy~V 243 (426)
.+++--++++.+.|+++++|++-.. ...+++.+ .++.+.. .+.. . ..+.-..+.. ....+ +-+|
T Consensus 30 ~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~-~~~~--~---~~g~~~s~~~-----~~~~~--~~~~ 96 (229)
T cd02523 30 PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKYPNIKFVY-NPDY--A---ETNNIYSLYL-----ARDFL--DEDF 96 (229)
T ss_pred EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhccCCeEEEe-Ccch--h---hhCcHHHHHH-----HHHHc--CCCE
Confidence 5666677788778998887766532 22333332 2332222 1110 0 0111112211 12222 4579
Q ss_pred EEecccEEeecCccccc-ccCCcEeeccCC
Q 014357 244 LLSDIDIVFLQNPFEYL-YRDSDVESMTDG 272 (426)
Q Consensus 244 L~sDvDVVWlrnP~~~~-~~daDi~~ssD~ 272 (426)
++...|+++-.+-+..+ ...+|+.+..+.
T Consensus 97 lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 126 (229)
T cd02523 97 LLLEGDVVFDPSILERLLSSPADNAILVDK 126 (229)
T ss_pred EEEeCCEecCHHHHHHHHcCCCCCeEEEcc
Confidence 99999998733323333 235565554443
No 420
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=37.33 E-value=1.3e+02 Score=26.93 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
+|..|+..|.+||+.++-++.-++.|.
T Consensus 85 ~L~qqv~~L~~e~s~~~~E~da~k~k~ 111 (135)
T KOG4196|consen 85 ELQQQVEKLKEENSRLRRELDAYKSKY 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 421
>PRK09343 prefoldin subunit beta; Provisional
Probab=37.33 E-value=1.1e+02 Score=26.62 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
|=...|+..+..++.+...|.||...|++++...++.-.++.
T Consensus 71 e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 71 KVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788888888888888888888888888887776666555
No 422
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=37.21 E-value=60 Score=31.89 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLT 92 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~ 92 (426)
....|++|-+.|++||++|+.|+.++.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~ 96 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELE 96 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777888888888877777664
No 423
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=37.08 E-value=1.1e+02 Score=34.80 Aligned_cols=87 Identities=13% Similarity=0.165 Sum_probs=51.6
Q ss_pred HHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccCCcccccccccCCcccCC-CCCchhH
Q 014357 66 RVNMLK-SDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPFGTVKALRTNPTVVPD-ESVNPRL 143 (426)
Q Consensus 66 r~~~l~-~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~~~~~~~~~~t~p~~~p~-~~~~p~L 143 (426)
|++.|+ -|...|++|.+||++|+.+|++=|.--+.-.+.-.+++....+.|.. | -|| .+... +...-.-
T Consensus 417 rL~~L~~le~~~i~~E~~~l~~e~~~l~~~L~~~~~~~~~i~~el~~~~~~~g~-~------RRt--~i~~~~~~~~~~~ 487 (735)
T TIGR01062 417 RLRHLAKLEEHAIIDEQSELEKERAILEKILKSERELNQLVKKEIQADATKYGL-A------RRS--SLEEREEAKQVSE 487 (735)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC-C------CCe--eeeccccccccch
Confidence 444443 36677788888888888888887766555556666777777777653 1 133 22211 1100011
Q ss_pred HHHHHHhcCCCeEEEEEcCcch
Q 014357 144 AKILEEVAVGKELIVALANSNV 165 (426)
Q Consensus 144 ~~lL~~~A~d~~VIvt~~N~~~ 165 (426)
+++ ..+..++|+.+..+|
T Consensus 488 ~~~----i~~e~v~VilTk~G~ 505 (735)
T TIGR01062 488 IDM----IPKEPVTIILSKMGW 505 (735)
T ss_pred hhc----ccCcceEEEEecCCE
Confidence 122 225678888888898
No 424
>PRK11546 zraP zinc resistance protein; Provisional
Probab=36.95 E-value=3.2e+02 Score=24.78 Aligned_cols=41 Identities=7% Similarity=0.005 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 59 SSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 59 ~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
.+..++|.-+.+++-...--.+-++||+|+..-+..|+-.-
T Consensus 41 ~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl 81 (143)
T PRK11546 41 AAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALL 81 (143)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456776666655555555555555555555555544433
No 425
>KOG4119 consensus G protein gamma subunit [Signal transduction mechanisms]
Probab=36.84 E-value=98 Score=24.79 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Q 014357 83 ELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHK 117 (426)
Q Consensus 83 ~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~ 117 (426)
.+++.|..|+.++.+-..--.+|.++++.+-+++.
T Consensus 11 q~k~~VeqLk~e~~~~R~~vS~a~~el~~y~E~~~ 45 (71)
T KOG4119|consen 11 QMKKEVEQLKLEANIERIKVSKAAAELLEYCETHA 45 (71)
T ss_pred HHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHhcC
Confidence 33444444444433333445677788888877765
No 426
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=36.72 E-value=30 Score=24.18 Aligned_cols=22 Identities=32% Similarity=0.677 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhcCCCccc
Q 014357 19 AIVIGVLVGCVFAFLFPHGFFS 40 (426)
Q Consensus 19 ~~~vgv~lg~~~a~~~~~~~~~ 40 (426)
..-.|++|=||+|++|++-||+
T Consensus 18 SLy~GlLlifvl~vLFssYffN 39 (39)
T PRK00753 18 SLYLGLLLVFVLGILFSSYFFN 39 (39)
T ss_pred hHHHHHHHHHHHHHHHHhhccC
Confidence 3567999999999999777763
No 427
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=36.61 E-value=1.6e+02 Score=26.51 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQ 108 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~ 108 (426)
..+-|..+|..+++++.+|.++..+.++|+...|.-.......
T Consensus 67 el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~ 109 (140)
T PF10473_consen 67 ELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENL 109 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3455777777777777777777777777766666544444433
No 428
>PF14282 FlxA: FlxA-like protein
Probab=36.40 E-value=1e+02 Score=26.20 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQ 85 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~ 85 (426)
..++..|+.++..|.++..+|.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~ 39 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELS 39 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666655554443
No 429
>PRK02793 phi X174 lysis protein; Provisional
Probab=36.29 E-value=1.4e+02 Score=23.70 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHK 117 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~ 117 (426)
+...|..|+.+.+=+.+=|.+|.+-+-.-.+..+.-++|+..|.++.+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 53 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666655555555555556555555443
No 430
>PRK10698 phage shock protein PspA; Provisional
Probab=36.27 E-value=1.1e+02 Score=29.45 Aligned_cols=39 Identities=18% Similarity=0.339 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGK 102 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~ 102 (426)
.+++..|+.++.+.+..-+.|+.++..|+.|+..++.-+
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~ 136 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQ 136 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777777766665433
No 431
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=36.19 E-value=96 Score=34.05 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=8.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 014357 77 LTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 77 ~~~~~~~l~~~~~~l~~kl~~a 98 (426)
|.++|..|++++.+|++++...
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l 176 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERL 176 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 432
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=36.14 E-value=1.3e+02 Score=24.64 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=15.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 014357 73 DIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMV 111 (426)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~ 111 (426)
++..|.....+|-..|.+.++.-...+++..--++++.-
T Consensus 24 ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 24 EILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGN 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333444444444433
No 433
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=35.98 E-value=64 Score=27.46 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 014357 84 LQKQVRQLTA 93 (426)
Q Consensus 84 l~~~~~~l~~ 93 (426)
-+|++.+|.+
T Consensus 88 ~~k~i~~le~ 97 (100)
T PF04568_consen 88 HRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 434
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=35.85 E-value=1.1e+02 Score=26.62 Aligned_cols=74 Identities=23% Similarity=0.354 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeCHHHHHHHHHCCCCEEEeCCCCCcccccccCcchhhHhhHHHHHHHHHh--cCcceE
Q 014357 167 SMLEVWSTNIKRVGITNYLVVALDDQTAEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGLKFRVLREFLQ--LDYSVL 244 (426)
Q Consensus 167 d~~~Nwl~slkr~Gi~n~lVvAlD~~a~~~c~~~g~~c~~~~~~~g~d~~~gs~~f~~m~~~K~~~l~~vL~--lGy~VL 244 (426)
.|++.-++.++..|+++++|++-+++.+..+...++.++.-... + .+. +.. +...+-. ..-.|+
T Consensus 25 ~li~~~l~~l~~~~~~~Ivvv~~~~~~~~~~~~~~~~~v~~~~~-~------~G~---~~s----l~~a~~~~~~~~~vl 90 (160)
T PF12804_consen 25 PLIERVLEALREAGVDDIVVVTGEEEIYEYLERYGIKVVVDPEP-G------QGP---LAS----LLAALSQLPSSEPVL 90 (160)
T ss_dssp EHHHHHHHHHHHHTESEEEEEESTHHHHHHHTTTTSEEEE-STS-S------CSH---HHH----HHHHHHTSTTSSEEE
T ss_pred cHHHHHHHHhhccCCceEEEecChHHHHHHHhccCceEEEeccc-c------CCh---HHH----HHHHHHhcccCCCcE
Confidence 46777788888889999999999988888888888877763211 1 011 111 1112222 356799
Q ss_pred EecccEEeec
Q 014357 245 LSDIDIVFLQ 254 (426)
Q Consensus 245 ~sDvDVVWlr 254 (426)
+.-+|+.|+.
T Consensus 91 v~~~D~p~~~ 100 (160)
T PF12804_consen 91 VLPCDQPFLS 100 (160)
T ss_dssp EEETTETTS-
T ss_pred EEeCCccccC
Confidence 9999998854
No 435
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=35.82 E-value=1.2e+02 Score=26.59 Aligned_cols=66 Identities=26% Similarity=0.284 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHhhhhhHHHHHHHHhhcccccCCcccccccccCCccc
Q 014357 65 ERVNMLKSDIASLTEKNAELQK--QVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPFGTVKALRTNPTVV 134 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~--~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~~~~~~~~~~t~p~~~ 134 (426)
+++..+++++.++.++..+++. +...+.++++.+++.-...-+.+..+|=.+|.--- +|-..|++.
T Consensus 20 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~Gv~vKd~~~----gLvDFPa~~ 87 (120)
T PF09969_consen 20 EEIRELKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIEELGVEVKDLDP----GLVDFPAKL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHHHcCcEEeCCcc----eeEeCCccc
Confidence 4555555555555555444433 34555566666666666666667777777765322 445555554
No 436
>PHA02414 hypothetical protein
Probab=35.80 E-value=1.1e+02 Score=25.95 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=27.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Q 014357 75 ASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHK 117 (426)
Q Consensus 75 ~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~ 117 (426)
+.|+..-+|||+=|..|-..+..-+..+.+-.=|+.+|++.+.
T Consensus 32 ~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~ 74 (111)
T PHA02414 32 KELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKIS 74 (111)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHH
Confidence 4555566666666666666666666556666667777776554
No 437
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=35.73 E-value=1.3e+02 Score=30.43 Aligned_cols=54 Identities=15% Similarity=0.044 Sum_probs=35.9
Q ss_pred CCCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEeCH------HHHHHHHHCCCCEEEeC
Q 014357 152 VGKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDD------QTAEYCKTNDIPVYQRD 208 (426)
Q Consensus 152 ~d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAlD~------~a~~~c~~~g~~c~~~~ 208 (426)
.|+.+|+|.+|+. -+..++..+.+.|-+--++++... .+...|.+.|+||....
T Consensus 114 ~~g~~ILT~~~S~---tv~~~l~~a~~~~~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~ 173 (301)
T TIGR00511 114 RDGDVVMTHCNSE---AALSVIKTAFEQGKDIEVIATETRPRKQGHITAKELRDYGIPVTLIV 173 (301)
T ss_pred CCCCEEEEECCcH---HHHHHHHHHHHcCCcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEe
Confidence 3788999999884 466677777666654334444332 35667778899888753
No 438
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=35.63 E-value=32 Score=31.17 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHh
Q 014357 65 ERVNMLKSDIASLTEKNAEL-QKQVRQLTAKLRLAE 99 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l-~~~~~~l~~kl~~a~ 99 (426)
+++.=+-.|+..+.++-+.- ++|+.+|.+-|+.++
T Consensus 44 ~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~ 79 (147)
T PF05659_consen 44 ESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGK 79 (147)
T ss_pred HHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHH
Confidence 34444445555555555555 777777777766554
No 439
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=35.30 E-value=1.3e+02 Score=28.48 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
+..+..|-..|++....+++++.+|+.+|...++-+.
T Consensus 50 m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~ 86 (201)
T PF13851_consen 50 MAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQ 86 (201)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555556666666666555554443
No 440
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=35.21 E-value=2.8e+02 Score=23.50 Aligned_cols=42 Identities=12% Similarity=0.208 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGE 114 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~ 114 (426)
....|+.+|.=.++|-+=|++.+.||.+.-+ +.+.++..+..
T Consensus 2 ~~aeLR~qLqFvEEEa~LlRRkl~ele~eN~-------~l~~EL~kyk~ 43 (96)
T PF11365_consen 2 DSAELRRQLQFVEEEAELLRRKLSELEDENK-------QLTEELNKYKS 43 (96)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 4678889998888888888888887776643 34445555554
No 441
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=35.09 E-value=1.6e+02 Score=30.41 Aligned_cols=108 Identities=16% Similarity=0.281 Sum_probs=58.2
Q ss_pred CCCCchhHHHHHHHhcC--CCeE-EEEEcCcchHHHHHHHHHHHHHc---CCC-cEEEEEeCHHHHHHHHHCC----CCE
Q 014357 136 DESVNPRLAKILEEVAV--GKEL-IVALANSNVKSMLEVWSTNIKRV---GIT-NYLVVALDDQTAEYCKTND----IPV 204 (426)
Q Consensus 136 ~~~~~p~L~~lL~~~A~--d~~V-Ivt~~N~~~~d~~~Nwl~slkr~---Gi~-n~lVvAlD~~a~~~c~~~g----~~c 204 (426)
+..-|++ +|++.-. |=|| ++.++-..|..|++.|++|..+. |.+ +|.|++=+.+..-.+. +| +.+
T Consensus 82 egTf~~~---~l~~~y~~~n~tIGL~vfA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~p~~vP~i~-l~~~r~~~V 157 (337)
T PF03414_consen 82 EGTFNRD---ILNEYYKQQNITIGLTVFATGKYIVFLKDFLESAEKHFMVGHRVIYYVFTDQPSKVPRIE-LGPGRRLKV 157 (337)
T ss_dssp TTSB-HH---HHHHHHHHCT-EEEEEEEE-CCHHHHHHHHHHHHHHHBSTTSEEEEEEEES-GGGS-------TTEEEEE
T ss_pred cCcCCHH---HHHHHHHhcCceEEEEEEecccHHHHHHHHHHhHHHhccCCcEEEEEEEeCchhhCCccc-cCCCceeEE
Confidence 5555554 4555432 4344 33466677999999999999875 654 5666655444332211 11 111
Q ss_pred EEeCCCCCcccccccCcchhhHhhHHHHHHHHHh----cCcc-eEEecccEEeecCcc
Q 014357 205 YQRDPDEGIDSIARKGGNHAVSGLKFRVLREFLQ----LDYS-VLLSDIDIVFLQNPF 257 (426)
Q Consensus 205 ~~~~~~~g~d~~~gs~~f~~m~~~K~~~l~~vL~----lGy~-VL~sDvDVVWlrnP~ 257 (426)
+.. .+...+..++..|...+....+ ..+| +.+.|+|.++ +|++
T Consensus 158 ~~v---------~~~~~Wqd~sm~Rm~~i~~~i~~~~~~EvDYLFc~dvd~~F-~~~v 205 (337)
T PF03414_consen 158 FEV---------QEEKRWQDISMMRMEMISEHIEQHIQHEVDYLFCMDVDMVF-QDHV 205 (337)
T ss_dssp EE----------SGGSSHHHHHHHHHHHHHHHHHHCHHHH-SEEEEEESSEEE--S-B
T ss_pred EEe---------cccCCCccchhHHHHHHHHHHHHHHhhcCCEEEEEecceEE-eccc
Confidence 211 1234567777778888887654 3356 5667999996 6665
No 442
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=35.07 E-value=1.4e+02 Score=25.86 Aligned_cols=36 Identities=28% Similarity=0.205 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 61 CESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 61 ~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
..+..-+.-||.+..+|+|||-=||-++.-|-.=|.
T Consensus 68 ~~~~~e~~rlkkk~~~LeEENNlLklKievLLDMLt 103 (108)
T cd07429 68 GVSGREVLRLKKKNQQLEEENNLLKLKIEVLLDMLA 103 (108)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888999999999888888877765544
No 443
>PRK14156 heat shock protein GrpE; Provisional
Probab=35.00 E-value=39 Score=31.67 Aligned_cols=123 Identities=14% Similarity=0.181 Sum_probs=62.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc-cccCCcccccccccCCcccCCCC
Q 014357 60 SCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQ-HKVGPFGTVKALRTNPTVVPDES 138 (426)
Q Consensus 60 ~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~-~~~~~~~~~~~~~t~p~~~p~~~ 138 (426)
..++.+-|...-.+ ..++.+.++|++|+.+|++++..+...-++..|....=.+. .+-|--..++.|- |.+ |
T Consensus 16 ~~~~~~~~~~~~~~-~~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LL--pVl---D- 88 (177)
T PRK14156 16 ATETEETVEEVVEE-TPEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAIL--PSL---D- 88 (177)
T ss_pred hhhHHHHHHHHHhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHH---h-
Confidence 44444545443222 44566667778888888877666655555544433221111 1111111222222 233 2
Q ss_pred CchhHHHHHHHhcCCCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEeCHHHHHHH
Q 014357 139 VNPRLAKILEEVAVGKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDDQTAEYC 197 (426)
Q Consensus 139 ~~p~L~~lL~~~A~d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAlD~~a~~~c 197 (426)
.|+..|.....+..+ -.|+.-....++..|.+.||..+=....|+..++..
T Consensus 89 ---nLerAl~~~~~~~~l-----~~Gv~mi~k~l~~~L~~~GV~~i~~~~FDP~~HEAv 139 (177)
T PRK14156 89 ---NLERALAVEGLTDDV-----KKGLEMVQESLIQALKEEGVEEVAVDSFDHNLHMAV 139 (177)
T ss_pred ---HHHHHHhCcccchhH-----HHHHHHHHHHHHHHHHHCCCeecCCCCCChhHhhcc
Confidence 354444332211111 145666777788888899975442237777777654
No 444
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=34.94 E-value=2.2e+02 Score=24.19 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=28.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH-HHHh-------hhhhHHHHHHHHhhcccc
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKL-RLAE-------QGKDQAQKQVMVLGEQHK 117 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl-~~a~-------qg~~~a~~~~~~~~~~~~ 117 (426)
..-..++++++.+..++.+|+..| ..|. ++...+++....|.++.+
T Consensus 8 ~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~ 61 (100)
T PF06428_consen 8 ERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLK 61 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557777777777777777776 4444 444444455666666654
No 445
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=34.80 E-value=75 Score=27.50 Aligned_cols=30 Identities=33% Similarity=0.521 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTA 93 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~ 93 (426)
-|.|.-||.+|..|+++|..|+.|-+=|+.
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888888888888888777655543
No 446
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=34.78 E-value=1.2e+02 Score=30.21 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQ 115 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~ 115 (426)
..-.+.+.++.+++.++++++.+|+.++...+..+...++++..+...
T Consensus 205 ~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~ 252 (312)
T PF00038_consen 205 EKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQR 252 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHH
Confidence 334455566666677777777777777666666666666665555443
No 447
>PRK10963 hypothetical protein; Provisional
Probab=34.77 E-value=1.1e+02 Score=29.50 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVL 112 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~ 112 (426)
=|.+..-|+..|++||.+|+.|+++|.+--+..++....-..-.+.|
T Consensus 38 aVSL~ErQ~~~LR~r~~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~L 84 (223)
T PRK10963 38 TVSLVEWQMARQRNHIHVLEEEMTLLMEQAIANEDLFYRLLPLQSRL 84 (223)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577788999999999999999999988777776666555433333
No 448
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=34.72 E-value=54 Score=23.90 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=17.1
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 014357 75 ASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 75 ~~~~~~~~~l~~~~~~l~~k 94 (426)
.||++|+.+|++.|-||..+
T Consensus 14 eqlrrelnsLR~~vhelctR 33 (48)
T PF10845_consen 14 EQLRRELNSLRRSVHELCTR 33 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 57888999999999999876
No 449
>PF14282 FlxA: FlxA-like protein
Probab=34.70 E-value=1.7e+02 Score=24.91 Aligned_cols=15 Identities=13% Similarity=0.494 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTE 79 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~ 79 (426)
+++..|+.+|..|..
T Consensus 26 ~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 26 KQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHc
Confidence 455566666655554
No 450
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=34.61 E-value=3.6e+02 Score=24.59 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
.+|-+....++...++...+..+...+.+++|..|++.
T Consensus 49 ~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~e 86 (174)
T PRK07352 49 EERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQE 86 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666665543
No 451
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=34.59 E-value=4.4e+02 Score=25.61 Aligned_cols=95 Identities=20% Similarity=0.253 Sum_probs=53.9
Q ss_pred hHHHHHHHhcC--CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEe---CHHHHHHHHHCCCCEEEeCCCC-C--c
Q 014357 142 RLAKILEEVAV--GKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVAL---DDQTAEYCKTNDIPVYQRDPDE-G--I 213 (426)
Q Consensus 142 ~L~~lL~~~A~--d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAl---D~~a~~~c~~~g~~c~~~~~~~-g--~ 213 (426)
++..-+.+.+. +-.+++..++.. .+-....++.+...+++-+++... +++.++.+.+.++|++.++... + .
T Consensus 77 ~~~~~i~~~~~~~gy~~~i~~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~ 155 (327)
T TIGR02417 77 RIAKELEQQCREAGYQLLIACSDDN-PDQEKVVIENLLARQVDALIVASCMPPEDAYYQKLQNEGLPVVALDRSLDDEHF 155 (327)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCC-HHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHHHhcCCCEEEEccccCCCCC
Confidence 45555555554 345555554432 223344566666668888777764 3466778888899998876432 1 1
Q ss_pred ccccccCcchhhHhhHHHHHHHHHhcCcc
Q 014357 214 DSIARKGGNHAVSGLKFRVLREFLQLDYS 242 (426)
Q Consensus 214 d~~~gs~~f~~m~~~K~~~l~~vL~lGy~ 242 (426)
+.. .+..+... -.++..++++|+.
T Consensus 156 ~~V-~~dn~~~~----~~~~~~L~~~G~~ 179 (327)
T TIGR02417 156 CSV-ISDDVDAA----AELIERLLSQHAD 179 (327)
T ss_pred CEE-EeCcHHHH----HHHHHHHHHCCCC
Confidence 111 22222221 1367788999983
No 452
>TIGR03510 XapX XapX domain. This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (Pfam model pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins.
Probab=34.53 E-value=39 Score=25.08 Aligned_cols=19 Identities=26% Similarity=0.602 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHhhc
Q 014357 16 IAIAIVIGVLVGCVFAFLF 34 (426)
Q Consensus 16 ~~~~~~vgv~lg~~~a~~~ 34 (426)
+.++.++|+++|++|+++=
T Consensus 2 ~llsl~~G~~vG~~~~~l~ 20 (49)
T TIGR03510 2 YLLSLGAGLLVGALYSLLK 20 (49)
T ss_pred cHHHHHHHHHHHHHHHHhC
Confidence 4577888888888888754
No 453
>cd06534 ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase superfamily. The aldehyde dehydrogenase superfamily (ALDH-SF) of NAD(P)+-dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydri
Probab=34.51 E-value=5e+02 Score=26.19 Aligned_cols=134 Identities=18% Similarity=0.144 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHhhhhh-------HHHHHHHHhhc-ccccCCcccccccccCC-
Q 014357 62 ESPERVNMLKSDIASLTEKNAELQKQVRQLTAK-LRLAEQGKD-------QAQKQVMVLGE-QHKVGPFGTVKALRTNP- 131 (426)
Q Consensus 62 ~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k-l~~a~qg~~-------~a~~~~~~~~~-~~~~~~~~~~~~~~t~p- 131 (426)
...+|.+.|+.=...+.+..++|.+.+..-+.| +..++..-. .+.++...+.. ....++.+.....+..|
T Consensus 14 ~~~~R~~~l~~l~~~l~~~~~~l~~~~~~e~Gk~~~~~~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 93 (367)
T cd06534 14 PPAERAAILRKIADLLEERREELAALETLETGKPIEEALGEVARAIDTFRYAAGLADKLGGPELPSPDPGGEAYVRREPL 93 (367)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCceeEEEEEee
Confidence 346888888877777777776666654333322 222221111 11122221111 11111222112222223
Q ss_pred ----cccCCCCCch---hHHHHHHHhcCCCeEEEEEcCcchHHHHHHHHHHHHHcCCC-cE-EEEEeCHH-HHHHHH
Q 014357 132 ----TVVPDESVNP---RLAKILEEVAVGKELIVALANSNVKSMLEVWSTNIKRVGIT-NY-LVVALDDQ-TAEYCK 198 (426)
Q Consensus 132 ----~~~p~~~~~p---~L~~lL~~~A~d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~-n~-lVvAlD~~-a~~~c~ 198 (426)
.+.|.. .| -+..++...+..|.||+-....... ...-+.+.++..|++ ++ -++.-|.+ ..+.+.
T Consensus 94 Gvv~~i~p~n--~p~~~~~~~~~~aL~~GN~vilk~s~~~~~-~~~~l~~~l~~ag~p~~~v~~~~~~~~~~~~~l~ 167 (367)
T cd06534 94 GVVGVITPWN--FPLLLAAWKLAPALAAGNTVVLKPSELTPL-TALALAELLQEAGLPPGVVNVVPGGGDEVGAALL 167 (367)
T ss_pred eEEEEECCCc--hHHHHHHHHHHHHHHcCCEEEEECCCcchH-HHHHHHHHHHhcCCCcCeEEEEEcCchhHHHHHh
Confidence 233322 23 3446677777889988887766643 445567788888863 33 34444443 444443
No 454
>PRK14143 heat shock protein GrpE; Provisional
Probab=34.41 E-value=1e+02 Score=30.28 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMV 111 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~ 111 (426)
+..++..|+++.++|++|+.+|+.++..+..--++..|....
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 455
>PRK14139 heat shock protein GrpE; Provisional
Probab=34.39 E-value=98 Score=29.21 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=16.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHH
Q 014357 73 DIASLTEKNAELQKQVRQLTAKLRLAEQGKDQA 105 (426)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a 105 (426)
++..++++.++|++|+.||++++..+...-++.
T Consensus 33 e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~ 65 (185)
T PRK14139 33 AAPALEAELAEAEAKAAELQDSFLRAKAETENV 65 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666666666654444333333
No 456
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=34.39 E-value=1.1e+02 Score=22.63 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=17.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
.....++.+..+|..+...|..++...+
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666666666666666666655544
No 457
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=34.32 E-value=68 Score=33.64 Aligned_cols=30 Identities=33% Similarity=0.383 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
++.-+..++++.++|.+++.+|.++|....
T Consensus 240 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~ 269 (406)
T PF02388_consen 240 GKEYLESLQEKLEKLEKEIEKLEEKLEKNP 269 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 456778999999999999999999876544
No 458
>PRK09526 lacI lac repressor; Reviewed
Probab=34.23 E-value=4.5e+02 Score=25.66 Aligned_cols=98 Identities=11% Similarity=0.127 Sum_probs=49.6
Q ss_pred hHHHHHHHhcC--CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEE-EeCHHHHHHHHH--CCCCEEEeCCCCCcccc
Q 014357 142 RLAKILEEVAV--GKELIVALANSNVKSMLEVWSTNIKRVGITNYLVV-ALDDQTAEYCKT--NDIPVYQRDPDEGIDSI 216 (426)
Q Consensus 142 ~L~~lL~~~A~--d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVv-AlD~~a~~~c~~--~g~~c~~~~~~~g~d~~ 216 (426)
.+..-+++.|. +-.+++..++..-.+-....++.+...+++-+++. ..|.+....+.. .++|++.++........
T Consensus 80 ~~~~gi~~~a~~~g~~~~i~~~~~~~~~~~~~~l~~l~~~~vdGiii~~~~~~~~~~~~~~~~~~iPvV~~d~~~~~~~~ 159 (342)
T PRK09526 80 QIAAAIKSRADQLGYSVVISMVERSGVEACQAAVNELLAQRVSGVIINVPLEDADAEKIVADCADVPCLFLDVSPQSPVN 159 (342)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHhcCCCEEEEecCCCcchHHHHHhhcCCCCEEEEeccCCCCCC
Confidence 45555555554 44566555543322222344555655688888874 666554444432 58998877643211111
Q ss_pred cccCcchhhHhhHHHHHHHHHhcCcc
Q 014357 217 ARKGGNHAVSGLKFRVLREFLQLDYS 242 (426)
Q Consensus 217 ~gs~~f~~m~~~K~~~l~~vL~lGy~ 242 (426)
+=..++...+. .....++++|+.
T Consensus 160 ~V~~d~~~~~~---~a~~~L~~~G~~ 182 (342)
T PRK09526 160 SVSFDPEDGTR---LGVEHLVELGHQ 182 (342)
T ss_pred EEEECcHHHHH---HHHHHHHHCCCC
Confidence 10112222222 256677888984
No 459
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=34.18 E-value=1.1e+02 Score=29.64 Aligned_cols=39 Identities=31% Similarity=0.446 Sum_probs=20.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Q 014357 77 LTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQ 115 (426)
Q Consensus 77 ~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~ 115 (426)
+++||+.++.+..-|+++++.-++.-+.|++++.++.+|
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq 187 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQ 187 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555544
No 460
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=34.15 E-value=2.1e+02 Score=23.10 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhhc
Q 014357 20 IVIGVLVGCVFAFLF 34 (426)
Q Consensus 20 ~~vgv~lg~~~a~~~ 34 (426)
|++.|+++.+|-+++
T Consensus 11 iif~ifVap~wl~lH 25 (75)
T TIGR02976 11 IIFVIFVAPLWLILH 25 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334456677777766
No 461
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=34.04 E-value=1.7e+02 Score=24.11 Aligned_cols=60 Identities=25% Similarity=0.427 Sum_probs=30.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccCCcccccccccCCcccCCCCCchhHHHHHHHhcC
Q 014357 77 LTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPFGTVKALRTNPTVVPDESVNPRLAKILEEVAV 152 (426)
Q Consensus 77 ~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~~~~~~~~~~t~p~~~p~~~~~p~L~~lL~~~A~ 152 (426)
.++.+.+|+++|.+|+.+|+ -|+....|. .-+-....|+. ...|... .+...++|..+|.
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~-~E~~~r~aL----e~al~~~~~~~------~~~~~~l-----p~~~keLL~EIA~ 65 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQ-EEQDLRRAL----EKALGRSSGSL------PSSPSSL-----PKKAKELLEEIAL 65 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHH-HHHHHHHHH----HHHhCCCCccc------CCccccC-----ChHHHHHHHHHHH
Confidence 34566667777777776665 223333222 22222344443 1233333 3456777887774
No 462
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=33.93 E-value=82 Score=32.22 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=36.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccC
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVG 119 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~ 119 (426)
.++..|.+|+++|+.++++++.+|++..+--.=|++--.-|.+.....
T Consensus 175 D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLdda 222 (323)
T PF08537_consen 175 DRVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDA 222 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456778889999999999999999998888888887655555444433
No 463
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.90 E-value=2.5e+02 Score=22.56 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLT 92 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~ 92 (426)
.+|+.+|...++--++..+||-.+|-|..
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~ 35 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALAEQQ 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777766655555555555444433
No 464
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=33.87 E-value=77 Score=33.29 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
++...|+.++.+++.++.+|+.+.+.++.++...+..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (398)
T PTZ00454 22 EKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEE 58 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666666555544443
No 465
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=33.81 E-value=92 Score=26.23 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
.+....|+.++..|+++..+|....+.|..++.
T Consensus 74 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l~ 106 (108)
T cd01107 74 DELRKLLREKLAELEAEIEELQRILRLLEDRLK 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888888888888888888777777777654
No 466
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=33.80 E-value=2.6e+02 Score=23.92 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHHHHhhc
Q 014357 16 IAIAIVIGVLVGCVFAFLF 34 (426)
Q Consensus 16 ~~~~~~vgv~lg~~~a~~~ 34 (426)
|.+|+++.+.+.+++.-++
T Consensus 4 l~~a~l~~~a~~~v~~pl~ 22 (117)
T TIGR03142 4 IVAALLTLVALLFLLLPLL 22 (117)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455555555555554444
No 467
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=33.55 E-value=95 Score=34.51 Aligned_cols=51 Identities=20% Similarity=0.332 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHK 117 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~ 117 (426)
+..|+.+|..|..+.+++..++..|+.++...++...+.+.....+.++++
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888888888877777777777777665
No 468
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=33.52 E-value=86 Score=36.94 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=8.5
Q ss_pred EEEEcCcchHHHHHHHHH
Q 014357 157 IVALANSNVKSMLEVWST 174 (426)
Q Consensus 157 Ivt~~N~~~~d~~~Nwl~ 174 (426)
-||..|--|...+++-|-
T Consensus 502 ~Vtl~~~KWa~aIE~~L~ 519 (1074)
T KOG0250|consen 502 YVTLKEPKWALAIERCLG 519 (1074)
T ss_pred eeEecCcHHHHHHHHHHH
Confidence 455555555444443333
No 469
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=33.50 E-value=70 Score=26.21 Aligned_cols=29 Identities=31% Similarity=0.580 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
.+.|++++..|+++.+.|.+++.+++.++
T Consensus 2 ~~~l~~~~~~L~~~~~~l~~~i~~~~~~l 30 (83)
T PF07061_consen 2 IESLEAEIQELKEQIEQLEKEISELEAEL 30 (83)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 470
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=33.38 E-value=2.4e+02 Score=26.71 Aligned_cols=41 Identities=24% Similarity=0.180 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQ 108 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~ 108 (426)
..|+.++....+..++|+|+.++|..-++...+-.+++++.
T Consensus 146 t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~~ne~~~~v~~e 186 (192)
T COG5374 146 TDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKE 186 (192)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45666677777777788888877766666555555555544
No 471
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=33.36 E-value=1e+02 Score=26.73 Aligned_cols=34 Identities=32% Similarity=0.264 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 63 SPERVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
..++...|+.++..++++.++|++..+.|..++.
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~~ 110 (127)
T cd01108 77 SADVKALALEHIAELERKIAELQAMRRTLQQLAD 110 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888877777776654
No 472
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=33.31 E-value=1.6e+02 Score=24.54 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=48.0
Q ss_pred eEEEEEcCcchHHHHHHHHHHHHHcCCCcE-EEEEeCH---HHHHHHHHC---CCCEEEeCCCCCcccccccCcchhhHh
Q 014357 155 ELIVALANSNVKSMLEVWSTNIKRVGITNY-LVVALDD---QTAEYCKTN---DIPVYQRDPDEGIDSIARKGGNHAVSG 227 (426)
Q Consensus 155 ~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~-lVvAlD~---~a~~~c~~~---g~~c~~~~~~~g~d~~~gs~~f~~m~~ 227 (426)
+||+.+-|. .+.+...++|+.+.....+ ++++-|. ++.+.+++. +.+...+.... ......
T Consensus 1 Svvip~~n~--~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~----------n~g~~~ 68 (169)
T PF00535_consen 1 SVVIPTYNE--AEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPE----------NLGFSA 68 (169)
T ss_dssp EEEEEESS---TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCC----------CSHHHH
T ss_pred CEEEEeeCC--HHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccccccccccccccc----------cccccc
Confidence 478888888 5678888899877732222 3443333 466667665 33433322110 011222
Q ss_pred hHHHHHHHHHhcCcceEEecccEEeecCccc
Q 014357 228 LKFRVLREFLQLDYSVLLSDIDIVFLQNPFE 258 (426)
Q Consensus 228 ~K~~~l~~vL~lGy~VL~sDvDVVWlrnP~~ 258 (426)
.+...+.. -.|-=+++.|.|.+|..+=+.
T Consensus 69 ~~n~~~~~--a~~~~i~~ld~D~~~~~~~l~ 97 (169)
T PF00535_consen 69 ARNRGIKH--AKGEYILFLDDDDIISPDWLE 97 (169)
T ss_dssp HHHHHHHH----SSEEEEEETTEEE-TTHHH
T ss_pred cccccccc--cceeEEEEeCCCceEcHHHHH
Confidence 33333333 234478999999999877333
No 473
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=33.29 E-value=62 Score=34.23 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
-+|...+..+-+.|+.+|.+|.+++.||++++..+.
T Consensus 289 ~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~~~ 324 (411)
T KOG1318|consen 289 LQRARELENRQKKLESTNQELALRIEELKSEAGRHG 324 (411)
T ss_pred HHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 466666677778888899999999999999877654
No 474
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=33.29 E-value=64 Score=32.06 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
.|+|+.|+.+...|.-+-..|++||+|+.+|+-.+
T Consensus 233 Edkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~h 267 (279)
T KOG0837|consen 233 EDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEH 267 (279)
T ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
No 475
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=33.27 E-value=92 Score=32.15 Aligned_cols=82 Identities=12% Similarity=0.144 Sum_probs=46.9
Q ss_pred chhhHHHHHHHHHHHHHHhhcCCCcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 014357 14 SRIAIAIVIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQLTA 93 (426)
Q Consensus 14 ~~~~~~~~vgv~lg~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~ 93 (426)
.|+.+-+++ ++|+|+....|..++.+-........++.... -.-++..+...|++|-.+|++||++|+.|+..+++
T Consensus 10 ~~~~~l~~~--~~~l~l~~~~~~~~~e~~r~~~~d~~ap~~~~--~~~p~~~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~ 85 (337)
T PRK14872 10 VRFIVYLII--ALGIIVSWSLPRPVYEKIQDTFVSLCSKFFPK--FRQGPSSHALVLETENFLLKERIALLEERLKSYEE 85 (337)
T ss_pred hhhHHHHHH--HHHHHHHhcCCcHHHHHHHHhhHHHhchhhHH--HhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 77777777664443322111111111111111 11234477789999999999999999999998766
Q ss_pred HHHHHh
Q 014357 94 KLRLAE 99 (426)
Q Consensus 94 kl~~a~ 99 (426)
-.+..+
T Consensus 86 l~~En~ 91 (337)
T PRK14872 86 ANQTPP 91 (337)
T ss_pred HHHHHH
Confidence 554433
No 476
>PRK00137 rplI 50S ribosomal protein L9; Reviewed
Probab=33.24 E-value=1.1e+02 Score=27.49 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
++.++.++.+..+++++.++.+++..++.++|.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~l~ 73 (147)
T PRK00137 41 KGNLKQLEARRAELEAKAAEELAEAEALAEKLE 73 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 778888888888888887777777777776655
No 477
>PHA01750 hypothetical protein
Probab=33.17 E-value=1.8e+02 Score=23.00 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=20.6
Q ss_pred HHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHH
Q 014357 68 NMLKSDIAS-LTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 68 ~~l~~~~~~-~~~~~~~l~~~~~~l~~kl~~a 98 (426)
++|+.-++. ..+|...|++|+.++.-|.+-.
T Consensus 30 q~lkdAvkeIV~~ELdNL~~ei~~~kikqDnl 61 (75)
T PHA01750 30 QALKDAVKEIVNSELDNLKTEIEELKIKQDEL 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 566666644 3567778888888887664443
No 478
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=33.07 E-value=90 Score=28.57 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
...++.++..-+++.++.+++..+|++|-+.+|+..+++.
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~ 107 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHAL 107 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 3455566666666666666666666666666666666666
No 479
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=33.01 E-value=1.5e+02 Score=29.16 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=34.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 77 LTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 77 ~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
..+...+.+++|.+|+.+|..+..-...|.+-|..+.+++
T Consensus 182 ~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeI 221 (239)
T PF05276_consen 182 FNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEI 221 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677889999999999999999999999888887765
No 480
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=32.98 E-value=1.5e+02 Score=29.06 Aligned_cols=48 Identities=13% Similarity=0.235 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMV 111 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~ 111 (426)
....+.|+.++..+.++...|..++.+|.+++...+......+.++..
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~ 135 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLER 135 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666665555555544444333
No 481
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.91 E-value=1.2e+02 Score=33.78 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
.++|+.|+.|.+.|+.++.+|++++..|.+||..+.
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888888888888888888888888776654
No 482
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=32.90 E-value=13 Score=25.74 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhcCCCcc
Q 014357 20 IVIGVLVGCVFAFLFPHGFF 39 (426)
Q Consensus 20 ~~vgv~lg~~~a~~~~~~~~ 39 (426)
.-.|++|=|++|++|++-||
T Consensus 17 LY~GLllifvl~vLFssyff 36 (37)
T PF02419_consen 17 LYWGLLLIFVLAVLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhc
Confidence 45789999999999966555
No 483
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=32.82 E-value=63 Score=32.38 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 58 GSSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 58 ~~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
+++|.| ..+.+|+--|.||+-.|+||+.+|+--|+
T Consensus 272 ~~s~~s--------~l~dQLK~qNQEL~ski~ELE~rLq~qek 306 (307)
T PF10481_consen 272 SNSSSS--------QLLDQLKAQNQELRSKINELELRLQGQEK 306 (307)
T ss_pred CCCCch--------HHHHHHHHHhHHHHHHHHHHHHHHhhccC
No 484
>PRK14151 heat shock protein GrpE; Provisional
Probab=32.73 E-value=73 Score=29.74 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=17.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 73 DIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
....++++.++|++|+.||++++..+...-++..
T Consensus 21 ~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~r 54 (176)
T PRK14151 21 AGDDLTARVQELEEQLAAAKDQSLRAAADLQNVR 54 (176)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666666544443333333
No 485
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=32.72 E-value=98 Score=26.83 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
.++..+|+.++..++++.++|++....|..++..
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~ 111 (126)
T cd04785 78 AEADAIARAHLADVRARIADLRRLEAELKRMVAA 111 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888777777643
No 486
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=32.69 E-value=1.8e+02 Score=24.94 Aligned_cols=39 Identities=33% Similarity=0.430 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
..||.-+..=..++++|++++++-...|+.++|..+.-.
T Consensus 15 ~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~ 53 (102)
T PF10205_consen 15 QVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLT 53 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566777777777777777777777766443
No 487
>PRK14145 heat shock protein GrpE; Provisional
Probab=32.65 E-value=1e+02 Score=29.38 Aligned_cols=37 Identities=8% Similarity=0.071 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
...++.+|.++.++|++++.+|+.++..+...-++..
T Consensus 43 ~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~r 79 (196)
T PRK14145 43 TVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYR 79 (196)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666677777777777777655544444444
No 488
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=32.63 E-value=1.2e+02 Score=31.03 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=20.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Q 014357 74 IASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQ 115 (426)
Q Consensus 74 ~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~ 115 (426)
...+..+.+.|+.|+..++.++..+++....+++++..+.++
T Consensus 139 ~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~ 180 (423)
T TIGR01843 139 KSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEE 180 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555555555443
No 489
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=32.61 E-value=1e+02 Score=34.71 Aligned_cols=54 Identities=22% Similarity=0.291 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccc
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKV 118 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~ 118 (426)
+++++|+.++..++++..+|+.++.+++++++.+-+....-++++..+.+.+..
T Consensus 241 ~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~ 294 (670)
T KOG0239|consen 241 KKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVE 294 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667999999999999999999999999999888877777666666666665553
No 490
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=32.61 E-value=1.1e+02 Score=22.79 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLT 92 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~ 92 (426)
+++.++|+.+++.++++.++|.+-.++|.
T Consensus 35 ~~~~~~l~~~~~~i~~~i~~L~~~~~~L~ 63 (65)
T PF09278_consen 35 ADRRALLEEKLEEIEEQIAELQALRAQLE 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888888888888888776666554
No 491
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=32.51 E-value=2.5e+02 Score=22.09 Aligned_cols=45 Identities=22% Similarity=0.199 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQV 109 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~ 109 (426)
.|.+.|+.|=..|.++.+.++.+=+.|.+|+..|.+-.+.--..+
T Consensus 14 ~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 14 EYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566777777777777777777777778888777776555433333
No 492
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.47 E-value=1.2e+02 Score=25.50 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
=+..|+.++..++.+...|.+++.++..++...+..
T Consensus 64 a~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 64 ARTELKERLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666665555443
No 493
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.43 E-value=1.2e+02 Score=28.42 Aligned_cols=105 Identities=23% Similarity=0.218 Sum_probs=72.1
Q ss_pred HHHHHHHHHHh-hhhhHHHHHHHHhhcccccCCcccccccccCCcccCCCCCchhHHHHHHHhcC-CCeEEEEEcCcchH
Q 014357 89 RQLTAKLRLAE-QGKDQAQKQVMVLGEQHKVGPFGTVKALRTNPTVVPDESVNPRLAKILEEVAV-GKELIVALANSNVK 166 (426)
Q Consensus 89 ~~l~~kl~~a~-qg~~~a~~~~~~~~~~~~~~~~~~~~~~~t~p~~~p~~~~~p~L~~lL~~~A~-d~~VIvt~~N~~~~ 166 (426)
|-|-|--|.|. .=++-++-+...|.-.+-+|-||+.|+|.....--..-+++|++..+.+..+. .+.+=+....-++.
T Consensus 62 NVLvEsARIaRG~i~~l~~a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~ 141 (217)
T COG3155 62 NVLVESARIARGEIRPLAQADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAML 141 (217)
T ss_pred hHHHHHHHHhhccccchhhcCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHH
Confidence 34555555554 23444555677788889999999999998765555567888999998888776 55554444444443
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeCHHHHHHHHHCCC
Q 014357 167 SMLEVWSTNIKRVGITNYLVVALDDQTAEYCKTNDI 202 (426)
Q Consensus 167 d~~~Nwl~slkr~Gi~n~lVvAlD~~a~~~c~~~g~ 202 (426)
..+ .|..--+-+.-|..+.+.++.+|-
T Consensus 142 pki---------~g~~~~~TIGnD~dTa~a~~~mG~ 168 (217)
T COG3155 142 PKI---------FGFPLRLTIGNDIDTAEALEEMGA 168 (217)
T ss_pred HHH---------cCCceeEEecCCccHHHHHHHhCc
Confidence 322 365555777889999999998863
No 494
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=32.36 E-value=1.7e+02 Score=26.67 Aligned_cols=49 Identities=27% Similarity=0.275 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
.+|..|...-..|++.-++.+++++.-.++|..+.+.-.+|.++...+.
T Consensus 74 ~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~~a~r~~eKf~ 122 (152)
T PF07321_consen 74 QQVASLREREAELEQQLAEAEEQLEQERQALEEARKQLQQARRQQEKFA 122 (152)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777888888888888888888888888888888887755443
No 495
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=32.25 E-value=1.9e+02 Score=27.86 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
+|+..+..++....++......++..|+.|+++.|+.-+.++
T Consensus 15 ~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~e 56 (237)
T PF00261_consen 15 ERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAE 56 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 455555555555555555555555555555555554444333
No 496
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=32.24 E-value=1.6e+02 Score=27.91 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHH
Q 014357 86 KQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 86 ~~~~~l~~kl~~a~qg~~~a~ 106 (426)
++|.....||+..|.-+.+..
T Consensus 108 ~eV~~Y~~KL~eLE~kq~~L~ 128 (195)
T PF10226_consen 108 QEVAQYQQKLKELEDKQEELI 128 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777765554443
No 497
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=32.19 E-value=25 Score=38.05 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGK 102 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~ 102 (426)
+...|..++..++++.++|++++.+|+.+|+.+..++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~ 175 (525)
T TIGR02231 139 EIERLLTEDREAERRIRELEKQLSELQNELNALLTGK 175 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 4444455555555555555555555555555554433
No 498
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=32.13 E-value=89 Score=24.08 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
.+..|+..|+++.+.+++++.-++.||
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=32.10 E-value=1.2e+02 Score=24.60 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Q 014357 78 TEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQ 115 (426)
Q Consensus 78 ~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~ 115 (426)
+.|..+|--+|++|..|++..|+-.+++..++.+..+.
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~e 61 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDE 61 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
No 500
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=32.04 E-value=2.4e+02 Score=24.11 Aligned_cols=67 Identities=12% Similarity=0.094 Sum_probs=0.0
Q ss_pred CchhHHHHHHHhcC--CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEe---CHHHHHHHHHCCCCEE
Q 014357 139 VNPRLAKILEEVAV--GKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVAL---DDQTAEYCKTNDIPVY 205 (426)
Q Consensus 139 ~~p~L~~lL~~~A~--d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAl---D~~a~~~c~~~g~~c~ 205 (426)
.+-..+++++.+.. -..|.++..+..+...+..+++.+++.|.+++.|++- =++..+.+.+.|+..|
T Consensus 35 ~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~ 106 (122)
T cd02071 35 LRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEI 106 (122)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEE
Done!