Query 014357
Match_columns 426
No_of_seqs 184 out of 384
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 10:06:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u2u_A Glycogenin-1, GN-1, GN1 98.0 0.00011 3.6E-09 71.1 15.1 160 154-344 4-173 (263)
2 1ll2_A Glycogenin-1; protein-s 98.0 0.0001 3.5E-09 73.5 15.0 155 157-344 7-172 (333)
3 1g9r_A Glycosyl transferase; a 97.1 0.0034 1.2E-07 61.3 12.3 174 157-344 3-197 (311)
4 3tzt_A Glycosyl transferase fa 96.9 0.0082 2.8E-07 57.9 12.5 230 157-411 8-269 (276)
5 2yy0_A C-MYC-binding protein; 94.4 0.039 1.4E-06 40.4 4.1 38 59-96 13-50 (53)
6 3cve_A Homer protein homolog 1 93.6 0.16 5.4E-06 39.5 6.2 48 68-115 3-50 (72)
7 1ci6_A Transcription factor AT 93.2 0.17 5.9E-06 38.1 5.8 35 65-99 23-57 (63)
8 2wt7_A Proto-oncogene protein 93.1 0.18 6.3E-06 37.9 5.8 35 65-99 23-57 (63)
9 1t2k_D Cyclic-AMP-dependent tr 92.9 0.21 7.2E-06 37.2 5.8 36 65-100 22-57 (61)
10 1jnm_A Proto-oncogene C-JUN; B 92.3 0.17 6E-06 37.9 4.7 36 64-99 21-56 (62)
11 1go4_E MAD1 (mitotic arrest de 92.2 0.17 5.7E-06 41.8 4.9 35 61-95 8-42 (100)
12 3cvf_A Homer-3, homer protein 92.2 0.26 8.7E-06 39.0 5.7 47 70-116 11-57 (79)
13 2dgc_A Protein (GCN4); basic d 92.1 0.16 5.3E-06 38.4 4.2 32 65-96 30-61 (63)
14 1hjb_A Ccaat/enhancer binding 91.5 0.34 1.2E-05 39.0 5.8 36 65-100 36-71 (87)
15 1kd8_B GABH BLL, GCN4 acid bas 91.3 0.29 9.8E-06 32.6 4.2 33 65-97 1-33 (36)
16 1dh3_A Transcription factor CR 90.6 0.2 6.9E-06 36.8 3.4 31 65-95 22-52 (55)
17 4dzn_A Coiled-coil peptide CC- 90.4 0.5 1.7E-05 30.0 4.6 25 67-91 4-28 (33)
18 1gu4_A CAAT/enhancer binding p 90.1 0.57 1.9E-05 36.9 5.8 35 65-99 36-70 (78)
19 2oxj_A Hybrid alpha/beta pepti 89.4 0.55 1.9E-05 30.9 4.2 31 65-95 1-31 (34)
20 3hnw_A Uncharacterized protein 89.3 0.82 2.8E-05 39.7 6.8 53 64-116 74-126 (138)
21 2yy0_A C-MYC-binding protein; 89.0 0.53 1.8E-05 34.3 4.6 29 72-100 19-47 (53)
22 2jee_A YIIU; FTSZ, septum, coi 88.9 1.6 5.3E-05 34.6 7.5 30 64-93 19-48 (81)
23 1kd8_A GABH AIV, GCN4 acid bas 88.6 0.59 2E-05 31.1 4.1 35 65-99 1-35 (36)
24 4dzn_A Coiled-coil peptide CC- 87.3 1.1 3.7E-05 28.5 4.5 29 73-101 3-31 (33)
25 2oqq_A Transcription factor HY 87.3 1.5 5E-05 30.3 5.5 34 67-100 5-38 (42)
26 3u1c_A Tropomyosin alpha-1 cha 86.6 2.2 7.5E-05 34.9 7.5 48 64-111 22-69 (101)
27 1g6u_A Domain swapped dimer; d 86.1 1.3 4.4E-05 30.3 4.7 32 59-90 14-45 (48)
28 1p9i_A Cortexillin I/GCN4 hybr 85.4 1.5 5.2E-05 27.4 4.4 26 70-95 4-29 (31)
29 1jcd_A Major outer membrane li 84.8 3.2 0.00011 30.1 6.7 41 63-106 2-42 (52)
30 3gp4_A Transcriptional regulat 84.2 3.2 0.00011 35.8 7.8 53 64-116 80-132 (142)
31 2wuj_A Septum site-determining 84.0 0.78 2.7E-05 33.8 3.2 28 68-95 30-57 (57)
32 1ic2_A Tropomyosin alpha chain 83.6 4.1 0.00014 31.8 7.5 48 64-111 19-66 (81)
33 3u59_A Tropomyosin beta chain; 83.3 3.8 0.00013 33.3 7.5 47 64-110 22-68 (101)
34 4e61_A Protein BIM1; EB1-like 83.0 2 6.9E-05 35.6 5.6 39 66-104 5-43 (106)
35 2v66_B Nuclear distribution pr 82.8 3.1 0.0001 34.9 6.7 44 64-107 34-77 (111)
36 3he4_B Synzip5; heterodimeric 82.8 2.3 7.9E-05 28.9 4.8 30 66-99 4-33 (46)
37 3m91_A Proteasome-associated A 82.6 3.9 0.00013 29.5 6.3 35 64-98 8-42 (51)
38 1a93_B MAX protein, coiled coi 82.4 1.4 4.9E-05 29.1 3.5 26 66-91 8-33 (34)
39 1nkp_B MAX protein, MYC proto- 80.5 1.6 5.6E-05 34.2 4.1 35 64-98 46-80 (83)
40 3he5_A Synzip1; heterodimeric 80.5 7.5 0.00026 26.7 6.7 23 66-88 4-26 (49)
41 4etp_A Kinesin-like protein KA 79.8 3.7 0.00013 41.6 7.5 64 64-134 9-72 (403)
42 3m48_A General control protein 79.7 2.3 8E-05 27.8 3.8 29 66-94 1-29 (33)
43 3ra3_B P2F; coiled coil domain 79.2 1.9 6.6E-05 26.4 3.1 26 75-100 3-28 (28)
44 3c3f_A Alpha/beta peptide with 79.2 3.1 0.00011 27.3 4.2 31 65-95 1-31 (34)
45 1gd2_E Transcription factor PA 78.7 2.7 9.2E-05 32.3 4.6 31 66-96 37-67 (70)
46 2f95_B Sensory rhodopsin II tr 77.5 0.95 3.3E-05 38.2 2.0 15 20-34 65-79 (163)
47 2jee_A YIIU; FTSZ, septum, coi 76.2 10 0.00034 30.0 7.3 38 65-102 13-50 (81)
48 3viq_A SWI5-dependent recombin 75.8 3.3 0.00011 35.2 4.9 31 76-106 4-34 (122)
49 3m9b_A Proteasome-associated A 75.7 3.2 0.00011 39.5 5.2 40 64-103 53-92 (251)
50 1lq7_A Alpha3W; three helix bu 75.3 5.6 0.00019 28.9 5.2 52 66-117 3-65 (67)
51 2hy6_A General control protein 75.1 4.3 0.00015 26.7 4.1 30 66-95 2-31 (34)
52 1fxk_C Protein (prefoldin); ar 74.4 5.2 0.00018 33.7 5.9 37 65-101 95-131 (133)
53 2eqb_B RAB guanine nucleotide 73.9 8.9 0.0003 31.3 6.7 48 65-112 12-59 (97)
54 2aze_B Transcription factor E2 73.9 6.1 0.00021 32.7 5.9 41 63-103 4-44 (106)
55 3hnw_A Uncharacterized protein 73.9 8.3 0.00028 33.3 7.0 40 65-104 89-128 (138)
56 2wq1_A General control protein 73.7 5.4 0.00018 26.0 4.2 29 66-94 1-29 (33)
57 2eqb_B RAB guanine nucleotide 73.1 13 0.00045 30.3 7.5 49 67-115 7-55 (97)
58 1nlw_A MAD protein, MAX dimeri 73.0 5.2 0.00018 31.3 5.0 32 65-96 47-78 (80)
59 1deb_A APC protein, adenomatou 73.0 15 0.0005 26.4 6.7 36 68-103 6-41 (54)
60 3c3g_A Alpha/beta peptide with 73.0 5.7 0.0002 25.9 4.2 30 66-95 1-30 (33)
61 1lrz_A FEMA, factor essential 73.0 23 0.00077 35.6 11.2 43 64-106 246-301 (426)
62 3v86_A De novo design helix; c 72.6 6.6 0.00022 23.8 4.1 23 69-91 4-26 (27)
63 3u59_A Tropomyosin beta chain; 71.2 14 0.00048 29.9 7.5 49 65-113 44-92 (101)
64 2j5u_A MREC protein; bacterial 70.8 2.5 8.4E-05 40.2 3.2 34 73-106 20-53 (255)
65 2bni_A General control protein 70.7 5.3 0.00018 26.3 3.7 30 65-94 1-30 (34)
66 3twe_A Alpha4H; unknown functi 70.5 4.4 0.00015 24.6 3.1 18 82-99 4-21 (27)
67 3oja_A Leucine-rich immune mol 70.1 7.5 0.00026 39.6 6.9 47 69-115 439-485 (487)
68 1t2k_D Cyclic-AMP-dependent tr 70.0 8.3 0.00028 28.3 5.3 30 65-94 29-58 (61)
69 3oja_B Anopheles plasmodium-re 69.6 9.3 0.00032 39.7 7.6 43 75-117 540-582 (597)
70 3o0z_A RHO-associated protein 69.5 14 0.00049 32.9 7.6 50 66-115 28-77 (168)
71 1uix_A RHO-associated kinase; 69.3 12 0.00039 28.9 6.0 32 70-101 2-33 (71)
72 2zqm_A Prefoldin beta subunit 68.2 8.7 0.0003 31.4 5.7 38 64-101 76-113 (117)
73 1ik9_A DNA repair protein XRCC 68.1 12 0.00039 34.8 7.1 44 66-109 133-176 (213)
74 3u1c_A Tropomyosin alpha-1 cha 68.0 18 0.00062 29.3 7.5 46 68-113 47-92 (101)
75 2efr_A General control protein 68.0 12 0.0004 33.1 6.7 39 77-115 68-106 (155)
76 3u06_A Protein claret segregat 66.9 13 0.00043 37.8 7.7 63 65-134 10-72 (412)
77 2xus_A Breast cancer metastasi 66.5 15 0.0005 26.3 5.6 28 59-88 2-29 (49)
78 1s1c_X RHO-associated, coiled- 66.5 12 0.00042 28.7 5.7 32 69-100 3-34 (71)
79 1q08_A Zn(II)-responsive regul 66.4 8.2 0.00028 30.5 5.0 38 64-101 38-75 (99)
80 2c0n_A A197; thermophil protei 65.7 15 0.00053 33.7 7.2 67 192-270 16-88 (203)
81 2wt7_B Transcription factor MA 65.6 11 0.00037 30.3 5.5 29 67-95 57-85 (90)
82 3ra3_A P1C; coiled coil domain 65.0 4 0.00014 25.0 2.1 23 76-98 4-26 (28)
83 1nkp_B MAX protein, MYC proto- 64.8 3.8 0.00013 32.0 2.7 37 65-101 37-76 (83)
84 2v71_A Nuclear distribution pr 64.0 17 0.00057 33.2 7.1 36 65-100 88-123 (189)
85 3gpv_A Transcriptional regulat 64.0 9.4 0.00032 33.0 5.3 40 64-103 94-133 (148)
86 1fmh_A General control protein 63.8 13 0.00043 23.6 4.3 26 67-92 3-28 (33)
87 3k29_A Putative uncharacterize 63.7 24 0.00081 31.5 7.8 51 60-110 66-116 (169)
88 3r8s_H 50S ribosomal protein L 62.7 12 0.00042 32.7 5.8 33 64-96 41-73 (149)
89 1fxk_A Prefoldin; archaeal pro 62.5 12 0.0004 30.1 5.3 33 64-96 71-103 (107)
90 4etp_A Kinesin-like protein KA 62.4 12 0.00043 37.7 6.6 56 67-130 5-60 (403)
91 3m91_A Proteasome-associated A 62.3 29 0.00098 24.9 6.6 43 71-113 8-50 (51)
92 4emc_A Monopolin complex subun 61.7 18 0.0006 32.9 6.7 34 67-100 22-55 (190)
93 2ve7_A Kinetochore protein HEC 61.6 4 0.00014 40.0 2.7 30 72-101 185-214 (315)
94 1uo4_A General control protein 61.2 11 0.00036 24.9 3.7 29 66-94 2-30 (34)
95 3mq7_A Bone marrow stromal ant 60.6 23 0.00078 29.7 6.7 31 78-108 70-100 (121)
96 1d7m_A Cortexillin I; coiled-c 60.5 16 0.00056 29.2 5.5 39 65-103 25-63 (101)
97 3r4h_A Coiled coil helix CC-TE 60.4 16 0.00056 23.2 4.4 31 73-103 3-33 (34)
98 3na7_A HP0958; flagellar bioge 60.1 14 0.00048 34.7 6.2 54 63-116 88-141 (256)
99 1gd2_E Transcription factor PA 60.0 15 0.00052 28.1 5.1 35 65-99 29-63 (70)
100 3lay_A Zinc resistance-associa 59.2 14 0.0005 33.1 5.8 37 60-96 66-102 (175)
101 1am9_A Srebp-1A, protein (ster 58.8 12 0.0004 29.3 4.5 28 64-91 49-76 (82)
102 3w03_C DNA repair protein XRCC 57.9 14 0.00047 33.6 5.3 32 64-95 151-182 (184)
103 1nkp_A C-MYC, MYC proto-oncoge 57.8 9.6 0.00033 30.3 3.9 34 65-98 52-85 (88)
104 1nkw_F 50S ribosomal protein L 57.6 16 0.00054 31.8 5.6 32 64-95 40-71 (146)
105 2v4h_A NF-kappa-B essential mo 56.7 24 0.00083 29.3 6.2 40 61-100 20-59 (110)
106 1uii_A Geminin; human, DNA rep 56.7 19 0.00065 28.5 5.3 25 69-93 50-74 (83)
107 1hjb_A Ccaat/enhancer binding 56.6 17 0.00059 28.9 5.2 30 65-94 43-72 (87)
108 4h22_A Leucine-rich repeat fli 56.6 28 0.00097 28.6 6.5 51 66-116 31-81 (103)
109 2zdi_C Prefoldin subunit alpha 56.4 15 0.00053 31.6 5.4 36 65-100 105-140 (151)
110 1nkp_A C-MYC, MYC proto-oncoge 55.8 18 0.00061 28.7 5.2 31 64-94 41-74 (88)
111 2oa5_A Hypothetical protein BQ 55.5 6 0.00021 32.9 2.3 24 67-90 10-33 (110)
112 1wt6_A Myotonin-protein kinase 55.4 20 0.00069 28.2 5.2 26 72-97 45-70 (81)
113 2zvf_A Alanyl-tRNA synthetase; 54.8 15 0.00053 31.9 5.1 24 64-87 31-54 (171)
114 1div_A Ribosomal protein L9; r 54.7 20 0.00067 31.3 5.7 32 64-95 41-72 (149)
115 1x79_B RAB GTPase binding effe 54.7 43 0.0015 27.9 7.5 32 75-106 34-65 (112)
116 2l5g_B Putative uncharacterize 54.6 24 0.00083 24.3 4.8 23 71-93 15-37 (42)
117 3a7p_A Autophagy protein 16; c 54.5 37 0.0013 29.8 7.3 33 68-100 64-96 (152)
118 1ic2_A Tropomyosin alpha chain 54.1 55 0.0019 25.2 7.7 44 68-111 30-73 (81)
119 3efg_A Protein SLYX homolog; x 53.8 39 0.0013 26.2 6.7 46 65-117 14-59 (78)
120 3viq_B Mating-type switching p 53.7 10 0.00036 30.1 3.4 25 70-94 6-30 (85)
121 1g6u_A Domain swapped dimer; d 53.7 20 0.00067 24.5 4.2 23 74-96 22-44 (48)
122 2wt7_A Proto-oncogene protein 53.6 26 0.0009 25.8 5.5 30 65-94 30-59 (63)
123 1lwu_C Fibrinogen gamma chain; 53.6 25 0.00085 34.6 6.9 50 67-116 7-56 (323)
124 1r8d_A Transcription activator 53.2 16 0.00056 29.5 4.7 32 64-95 74-105 (109)
125 2wg5_A General control protein 53.1 10 0.00036 31.2 3.5 26 74-99 9-34 (109)
126 1jnm_A Proto-oncogene C-JUN; B 51.8 11 0.00036 27.9 3.0 26 66-91 30-55 (62)
127 1ci6_A Transcription factor AT 51.7 30 0.001 25.7 5.5 30 72-101 23-52 (63)
128 2l5g_B Putative uncharacterize 51.7 33 0.0011 23.6 5.1 32 69-100 6-37 (42)
129 3mq7_A Bone marrow stromal ant 51.2 27 0.00092 29.3 5.6 42 75-116 60-101 (121)
130 1nlw_A MAD protein, MAX dimeri 51.0 13 0.00044 29.0 3.5 35 66-100 38-75 (80)
131 3nmd_A CGMP dependent protein 50.9 60 0.0021 24.9 7.1 54 59-112 13-66 (72)
132 3na7_A HP0958; flagellar bioge 50.5 31 0.0011 32.3 6.8 54 64-117 31-84 (256)
133 3twe_A Alpha4H; unknown functi 50.5 21 0.00072 21.6 3.5 21 76-96 5-25 (27)
134 3q0x_A Centriole protein; cent 50.3 41 0.0014 31.5 7.4 49 64-112 170-218 (228)
135 2oqq_A Transcription factor HY 50.1 43 0.0015 23.0 5.5 25 74-98 5-29 (42)
136 1joc_A EEA1, early endosomal a 50.0 43 0.0015 28.0 7.0 38 65-103 5-42 (125)
137 4dzo_A Mitotic spindle assembl 49.9 24 0.00082 29.8 5.3 34 63-96 2-35 (123)
138 3iyn_Q Protein IX, PIX, hexon- 49.7 20 0.00068 30.4 4.6 31 64-94 97-127 (140)
139 3nmd_A CGMP dependent protein 49.5 34 0.0011 26.4 5.5 31 68-98 36-66 (72)
140 1wle_A Seryl-tRNA synthetase; 49.2 37 0.0013 35.3 7.7 26 301-326 330-356 (501)
141 3oja_B Anopheles plasmodium-re 48.9 28 0.00096 36.0 6.8 27 71-97 515-541 (597)
142 1dip_A Delta-sleep-inducing pe 48.9 10 0.00034 29.4 2.5 25 78-102 14-38 (78)
143 2xdj_A Uncharacterized protein 48.7 45 0.0015 26.2 6.4 41 69-109 24-64 (83)
144 1zxa_A CGMP-dependent protein 48.7 19 0.00066 27.3 4.0 33 64-96 24-56 (67)
145 2wg5_A General control protein 48.6 11 0.00039 31.0 3.0 28 66-93 8-35 (109)
146 2r2v_A GCN4 leucine zipper; co 48.5 29 0.001 22.8 4.2 28 66-93 2-29 (34)
147 3hh0_A Transcriptional regulat 48.3 26 0.0009 30.0 5.5 40 64-103 79-118 (146)
148 3ljm_A Coil Ser L9C; de novo d 47.8 26 0.00088 21.9 3.7 27 75-101 4-30 (31)
149 4emc_A Monopolin complex subun 47.7 14 0.0005 33.5 3.8 48 69-116 10-57 (190)
150 1sf9_A YFHH hypothetical prote 47.2 13 0.00044 31.6 3.1 34 71-106 26-59 (128)
151 1fxk_C Protein (prefoldin); ar 47.0 46 0.0016 27.7 6.7 48 62-109 85-132 (133)
152 2yxy_A Hypothetical conserved 46.7 13 0.00046 31.0 3.1 25 82-106 17-41 (115)
153 3bas_A Myosin heavy chain, str 46.6 72 0.0025 25.1 7.4 46 63-108 12-57 (89)
154 2v66_B Nuclear distribution pr 46.2 46 0.0016 27.6 6.4 36 73-108 36-71 (111)
155 1d7m_A Cortexillin I; coiled-c 46.2 66 0.0023 25.7 6.9 50 66-115 5-54 (101)
156 3rvy_A ION transport protein; 46.2 9.4 0.00032 35.9 2.5 25 72-96 256-280 (285)
157 3q8t_A Beclin-1; autophagy, AT 46.0 62 0.0021 26.0 7.0 33 69-101 22-54 (96)
158 1a93_B MAX protein, coiled coi 45.6 35 0.0012 22.5 4.3 22 78-99 6-27 (34)
159 2v71_A Nuclear distribution pr 44.9 59 0.002 29.5 7.4 32 74-105 90-121 (189)
160 3qao_A LMO0526 protein, MERR-l 44.8 25 0.00085 33.0 5.2 41 63-103 74-114 (249)
161 3tq2_A KE1; parallel three hel 44.6 23 0.0008 22.8 3.3 25 70-94 6-30 (36)
162 2ocy_A RAB guanine nucleotide 44.6 57 0.0019 28.7 7.0 48 66-113 45-92 (154)
163 2vz4_A Tipal, HTH-type transcr 44.4 19 0.00066 29.0 3.8 32 64-95 73-104 (108)
164 3u06_A Protein claret segregat 44.4 38 0.0013 34.2 6.8 37 68-104 6-42 (412)
165 3viq_B Mating-type switching p 44.3 68 0.0023 25.4 6.7 49 65-113 8-65 (85)
166 2gkw_A TNF receptor-associated 44.2 30 0.001 30.8 5.4 36 67-102 2-37 (192)
167 1fmh_B General control protein 43.9 50 0.0017 20.8 4.7 28 67-94 3-30 (33)
168 1r8e_A Multidrug-efflux transp 43.8 33 0.0011 31.8 5.9 39 63-101 77-115 (278)
169 3s4r_A Vimentin; alpha-helix, 43.7 88 0.003 24.9 7.5 22 72-93 23-44 (93)
170 3iv1_A Tumor susceptibility ge 43.6 1E+02 0.0034 24.0 7.5 50 64-113 17-66 (78)
171 2wuj_A Septum site-determining 43.6 19 0.00066 26.2 3.3 27 74-100 29-55 (57)
172 2zvf_A Alanyl-tRNA synthetase; 43.6 28 0.00094 30.2 5.0 30 69-98 29-58 (171)
173 2dfs_A Myosin-5A; myosin-V, in 43.5 37 0.0013 38.7 7.1 36 77-112 975-1010(1080)
174 1dip_A Delta-sleep-inducing pe 43.2 18 0.0006 28.0 3.0 29 65-93 15-43 (78)
175 1wt6_A Myotonin-protein kinase 43.2 87 0.003 24.5 7.1 44 69-112 28-71 (81)
176 2dq0_A Seryl-tRNA synthetase; 43.0 64 0.0022 33.0 8.3 32 82-113 72-103 (455)
177 4gif_A Polycystic kidney disea 43.0 79 0.0027 22.1 6.1 42 60-101 2-43 (45)
178 3e61_A Putative transcriptiona 42.9 95 0.0032 27.8 8.8 85 153-242 38-123 (277)
179 1fzc_C Fibrin; blood coagulati 42.9 23 0.00077 34.8 4.6 32 64-95 17-48 (319)
180 1gu4_A CAAT/enhancer binding p 42.9 22 0.00074 27.8 3.6 28 65-92 43-70 (78)
181 1zme_C Proline utilization tra 42.8 20 0.00068 26.2 3.3 23 73-95 45-67 (70)
182 3qne_A Seryl-tRNA synthetase, 41.6 55 0.0019 33.9 7.5 33 82-114 74-106 (485)
183 3s4r_A Vimentin; alpha-helix, 41.5 82 0.0028 25.1 7.0 45 64-108 22-78 (93)
184 3cve_A Homer protein homolog 1 41.4 1.2E+02 0.004 23.3 7.6 50 64-113 20-69 (72)
185 1joc_A EEA1, early endosomal a 41.2 88 0.003 26.1 7.6 36 64-99 10-45 (125)
186 3cvf_A Homer-3, homer protein 41.2 1.1E+02 0.0037 23.9 7.4 30 65-94 13-42 (79)
187 1jcd_A Major outer membrane li 40.7 90 0.0031 22.4 6.3 36 65-100 11-46 (52)
188 3tnu_B Keratin, type II cytosk 40.5 84 0.0029 26.3 7.3 40 64-103 35-74 (129)
189 3efg_A Protein SLYX homolog; x 40.5 61 0.0021 25.1 5.9 34 65-98 21-54 (78)
190 3htk_A Structural maintenance 40.1 62 0.0021 23.1 5.6 40 68-107 8-47 (60)
191 3e35_A Uncharacterized protein 40.0 20 0.00067 35.3 3.7 38 81-118 236-274 (325)
192 3m9b_A Proteasome-associated A 39.9 31 0.0011 32.7 4.9 37 80-116 55-91 (251)
193 1gmj_A ATPase inhibitor; coile 39.8 68 0.0023 25.4 6.0 37 65-101 40-80 (84)
194 3tnu_A Keratin, type I cytoske 39.6 84 0.0029 26.4 7.2 29 66-94 46-74 (131)
195 2akf_A Coronin-1A; coiled coil 39.5 25 0.00085 22.3 2.8 24 76-99 3-26 (32)
196 3pjs_K KCSA, voltage-gated pot 39.4 1.4E+02 0.0048 25.7 9.0 22 82-103 141-162 (166)
197 3tnu_B Keratin, type II cytosk 39.3 86 0.0029 26.2 7.2 35 63-97 41-75 (129)
198 3htk_A Structural maintenance 38.7 1E+02 0.0036 21.9 6.8 34 66-99 13-46 (60)
199 1l8d_A DNA double-strand break 38.6 77 0.0026 25.4 6.6 32 66-97 65-96 (112)
200 1q06_A Transcriptional regulat 38.4 49 0.0017 27.8 5.5 34 64-97 78-111 (135)
201 2lw1_A ABC transporter ATP-bin 38.4 54 0.0019 25.7 5.4 29 69-97 19-47 (89)
202 3s9g_A Protein hexim1; cyclin 38.1 20 0.00069 29.2 2.8 30 70-99 42-78 (104)
203 1zvu_A Topoisomerase IV subuni 37.9 74 0.0025 34.6 8.0 83 71-166 401-484 (716)
204 1lwu_C Fibrinogen gamma chain; 37.6 56 0.0019 32.1 6.5 39 65-103 12-50 (323)
205 3gpv_A Transcriptional regulat 37.5 38 0.0013 29.0 4.8 38 82-119 98-135 (148)
206 4egx_A Kinesin-like protein KI 37.4 79 0.0027 28.2 7.1 64 69-136 9-74 (184)
207 2fxo_A Myosin heavy chain, car 37.3 90 0.0031 26.1 7.0 51 64-114 68-118 (129)
208 3k29_A Putative uncharacterize 37.2 92 0.0032 27.7 7.2 48 65-112 78-125 (169)
209 1ses_A Seryl-tRNA synthetase; 37.2 72 0.0025 32.2 7.5 32 82-113 67-98 (421)
210 3bas_A Myosin heavy chain, str 37.1 1.2E+02 0.0043 23.7 7.4 45 68-112 38-82 (89)
211 3ks6_A Glycerophosphoryl diest 37.0 2.4E+02 0.0083 25.6 11.1 19 229-247 214-232 (250)
212 4g1a_A AQ-C16C19 peptide; heli 36.9 14 0.00049 23.2 1.3 26 75-100 3-28 (32)
213 3r8r_A Transaldolase; pentose 36.7 41 0.0014 31.0 5.1 81 120-204 18-105 (212)
214 1kd8_B GABH BLL, GCN4 acid bas 36.7 58 0.002 21.6 4.3 25 74-98 3-27 (36)
215 3h5t_A Transcriptional regulat 36.5 1.3E+02 0.0046 28.3 9.1 95 143-242 91-190 (366)
216 3mq9_A Bone marrow stromal ant 36.5 29 0.001 34.9 4.5 34 77-110 434-467 (471)
217 1avy_A Fibritin, gpwac M; bact 36.2 75 0.0026 24.3 5.5 33 67-99 10-42 (74)
218 2dfs_A Myosin-5A; myosin-V, in 35.8 62 0.0021 36.8 7.4 36 71-106 976-1011(1080)
219 3vkg_A Dynein heavy chain, cyt 35.6 48 0.0016 42.2 6.8 50 65-114 2014-2063(3245)
220 2ve7_C Kinetochore protein NUF 35.5 8.6 0.0003 36.4 0.3 28 68-95 151-178 (250)
221 3tnu_A Keratin, type I cytoske 35.5 69 0.0024 26.9 6.0 44 64-107 37-80 (131)
222 1ykh_B RNA polymerase II holoe 35.4 61 0.0021 27.5 5.7 24 85-108 91-114 (132)
223 1uii_A Geminin; human, DNA rep 35.3 51 0.0018 26.0 4.6 29 78-106 45-73 (83)
224 3i00_A HIP-I, huntingtin-inter 35.0 1.1E+02 0.0039 25.5 7.2 27 82-108 43-69 (120)
225 1yhn_B RILP, RAB interacting l 35.0 39 0.0013 25.2 3.7 30 72-101 3-32 (65)
226 3mtu_A Tropomyosin alpha-1 cha 34.9 1.3E+02 0.0043 23.0 6.9 24 70-93 7-30 (75)
227 3v2d_I 50S ribosomal protein L 34.9 50 0.0017 28.7 5.1 49 27-95 24-72 (148)
228 2pnv_A Small conductance calci 34.7 34 0.0012 23.7 3.2 12 70-81 21-32 (43)
229 4ecm_A Glucose-1-phosphate thy 34.7 1.4E+02 0.0047 27.3 8.6 32 167-198 56-90 (269)
230 3kin_B Kinesin heavy chain; mo 34.6 52 0.0018 27.3 5.0 30 68-97 85-114 (117)
231 3e98_A GAF domain of unknown f 34.6 67 0.0023 30.1 6.4 40 67-106 67-106 (252)
232 2wq1_A General control protein 34.6 68 0.0023 20.9 4.3 24 74-97 2-25 (33)
233 2fxo_A Myosin heavy chain, car 34.2 1.2E+02 0.0042 25.3 7.4 47 64-110 12-58 (129)
234 1yke_B RNA polymerase II holoe 33.9 65 0.0022 28.1 5.7 42 82-123 95-136 (151)
235 3eff_K Voltage-gated potassium 33.8 2E+02 0.0067 23.8 8.7 23 81-103 113-135 (139)
236 3a7o_A Autophagy protein 16; c 33.8 1.5E+02 0.0052 22.6 6.8 35 69-103 15-49 (75)
237 3rrk_A V-type ATPase 116 kDa s 33.7 79 0.0027 30.5 7.0 26 183-208 188-216 (357)
238 2wt7_B Transcription factor MA 33.6 83 0.0028 25.2 5.7 34 73-106 49-82 (90)
239 1gk7_A Vimentin; intermediate 33.4 30 0.001 23.4 2.7 7 78-84 26-32 (39)
240 2xdj_A Uncharacterized protein 33.4 1.4E+02 0.0048 23.3 7.0 29 77-105 25-53 (83)
241 2ke4_A CDC42-interacting prote 33.2 73 0.0025 25.8 5.5 40 80-119 16-55 (98)
242 2oto_A M protein; helical coil 33.0 91 0.0031 26.8 6.5 30 69-98 54-83 (155)
243 3a7p_A Autophagy protein 16; c 32.9 1.3E+02 0.0046 26.2 7.4 25 65-89 68-92 (152)
244 1hlo_A Protein (transcription 32.5 30 0.001 26.6 2.9 18 75-92 60-77 (80)
245 1i84_S Smooth muscle myosin he 32.5 47 0.0016 38.1 5.7 43 64-106 856-898 (1184)
246 3axj_A GM27569P, translin; tra 32.3 94 0.0032 29.1 6.9 30 65-94 22-51 (249)
247 2z5i_I TM, tropomyosin alpha-1 32.2 58 0.002 22.2 3.9 34 73-106 4-37 (40)
248 4ani_A Protein GRPE; chaperone 32.1 76 0.0026 29.3 6.1 35 72-106 59-93 (213)
249 3arc_L Photosystem II reaction 32.0 13 0.00044 24.7 0.6 21 19-39 16-36 (37)
250 1l8d_A DNA double-strand break 31.8 96 0.0033 24.8 6.1 40 74-113 5-44 (112)
251 3o0z_A RHO-associated protein 31.7 88 0.003 27.8 6.2 41 66-106 98-138 (168)
252 1grj_A GREA protein; transcrip 31.5 44 0.0015 29.1 4.2 38 62-99 6-44 (158)
253 1j1j_A Translin; testis/brain 31.3 1.2E+02 0.004 28.3 7.4 31 64-94 16-46 (240)
254 3q8t_A Beclin-1; autophagy, AT 31.1 1.4E+02 0.0048 23.8 6.9 29 66-94 5-33 (96)
255 2lw1_A ABC transporter ATP-bin 31.0 1.5E+02 0.005 23.1 6.9 47 67-113 24-83 (89)
256 3mtu_A Tropomyosin alpha-1 cha 30.8 92 0.0031 23.8 5.4 35 66-100 10-51 (75)
257 1qg8_A Protein (spore coat pol 30.8 1.9E+02 0.0066 25.3 8.7 97 155-258 4-107 (255)
258 1kd8_A GABH AIV, GCN4 acid bas 30.2 45 0.0015 22.1 2.9 25 74-98 3-27 (36)
259 2v4h_A NF-kappa-B essential mo 29.8 62 0.0021 26.8 4.5 23 68-90 48-73 (110)
260 2f95_B Sensory rhodopsin II tr 29.7 17 0.00058 30.2 1.2 11 24-34 65-75 (163)
261 2e7s_A RAB guanine nucleotide 29.4 48 0.0017 28.5 3.9 40 74-113 41-80 (135)
262 1fxk_A Prefoldin; archaeal pro 29.2 90 0.0031 24.6 5.5 37 64-100 64-100 (107)
263 2no2_A HIP-I, huntingtin-inter 29.1 1.5E+02 0.005 24.3 6.7 30 70-99 13-42 (107)
264 1i84_S Smooth muscle myosin he 29.0 73 0.0025 36.5 6.6 31 65-95 864-894 (1184)
265 2wvr_A Geminin; DNA replicatio 29.0 86 0.0029 28.7 5.7 19 80-98 116-134 (209)
266 3o74_A Fructose transport syst 28.9 2.4E+02 0.0081 24.8 9.0 94 145-242 22-121 (272)
267 2zqm_A Prefoldin beta subunit 28.7 1.2E+02 0.0041 24.3 6.2 37 65-101 70-106 (117)
268 4b4t_M 26S protease regulatory 28.6 46 0.0016 33.9 4.4 30 68-97 42-71 (434)
269 3zwh_Q Myosin-9; Ca-binding pr 28.6 22 0.00077 24.9 1.4 27 70-96 4-30 (45)
270 3tb6_A Arabinose metabolism tr 28.1 3.2E+02 0.011 24.3 10.2 96 142-242 32-138 (298)
271 1bb1_B Designed, thermostable 28.0 95 0.0033 19.9 4.1 26 65-90 2-27 (36)
272 3tq2_A KE1; parallel three hel 28.0 1E+02 0.0035 19.8 4.2 27 65-91 8-34 (36)
273 3dm5_A SRP54, signal recogniti 27.9 4.1E+02 0.014 26.9 11.3 40 167-207 115-161 (443)
274 1zme_C Proline utilization tra 27.8 32 0.0011 25.1 2.3 27 64-90 43-69 (70)
275 2j5u_A MREC protein; bacterial 27.6 25 0.00086 33.1 2.1 29 66-94 20-48 (255)
276 3oam_A 3-deoxy-manno-octuloson 27.1 1.4E+02 0.0048 27.1 7.1 41 167-207 28-68 (252)
277 1fzc_C Fibrin; blood coagulati 27.0 45 0.0016 32.6 3.8 20 227-246 140-161 (319)
278 1rtm_1 Mannose-binding protein 26.9 47 0.0016 27.6 3.5 23 77-99 2-24 (149)
279 1wle_A Seryl-tRNA synthetase; 26.9 75 0.0026 33.0 5.7 34 81-114 118-151 (501)
280 3i00_A HIP-I, huntingtin-inter 26.8 71 0.0024 26.8 4.5 17 67-83 42-58 (120)
281 1lrz_A FEMA, factor essential 26.6 65 0.0022 32.1 5.1 27 70-96 245-271 (426)
282 1ses_A Seryl-tRNA synthetase; 26.5 79 0.0027 31.9 5.7 26 300-325 273-299 (421)
283 2xu6_A MDV1 coiled coil; prote 26.5 2.2E+02 0.0074 21.8 7.4 50 66-115 15-64 (72)
284 3c3g_A Alpha/beta peptide with 26.3 1.1E+02 0.0039 19.8 4.3 24 74-97 2-25 (33)
285 2dq3_A Seryl-tRNA synthetase; 26.2 56 0.0019 33.0 4.5 29 385-413 374-404 (425)
286 2wvr_A Geminin; DNA replicatio 26.2 89 0.003 28.6 5.3 26 68-93 118-143 (209)
287 1xou_B Z5138 gene product; coi 26.1 1.3E+02 0.0045 23.3 5.4 48 69-120 16-66 (95)
288 4evw_A Nucleoside-diphosphate- 25.9 3.7E+02 0.013 24.3 11.9 28 240-267 106-133 (255)
289 2p6w_A VP54, putative glycosyl 25.8 94 0.0032 28.5 5.3 150 153-344 6-162 (213)
290 1t6f_A Geminin; coiled-coil, c 25.8 90 0.0031 20.7 3.8 22 70-91 12-33 (37)
291 2w6b_A RHO guanine nucleotide 25.5 1.8E+02 0.0061 21.1 5.7 13 69-81 14-26 (56)
292 1x79_B RAB GTPase binding effe 25.2 1.6E+02 0.0054 24.4 6.2 51 63-116 4-54 (112)
293 1dh3_A Transcription factor CR 25.2 1.1E+02 0.0038 21.9 4.7 23 74-96 24-46 (55)
294 1wlq_A Geminin; coiled-coil; 2 25.1 1E+02 0.0036 24.2 4.8 21 79-99 38-58 (83)
295 2zdi_C Prefoldin subunit alpha 24.9 1.1E+02 0.0037 26.1 5.5 47 62-108 95-141 (151)
296 3qvq_A Phosphodiesterase OLEI0 24.9 3.8E+02 0.013 24.3 9.7 17 231-247 222-238 (252)
297 2yko_A LINE-1 ORF1P; RNA-bindi 24.8 1.1E+02 0.0039 28.5 5.9 36 64-99 12-47 (233)
298 4etp_B Spindle POLE BODY-assoc 24.6 75 0.0026 31.2 4.8 35 72-106 3-37 (333)
299 4b4t_K 26S protease regulatory 24.4 1E+02 0.0035 31.2 6.0 34 64-97 48-81 (428)
300 3rrk_A V-type ATPase 116 kDa s 24.4 1.6E+02 0.0054 28.4 7.2 33 62-94 223-255 (357)
301 3egc_A Putative ribose operon 24.3 3.3E+02 0.011 24.2 9.2 93 146-242 29-126 (291)
302 4fi5_A Nucleoprotein; structur 24.2 57 0.0019 27.1 3.3 33 71-103 68-100 (113)
303 2zhg_A Redox-sensitive transcr 24.0 78 0.0027 27.2 4.5 32 64-95 89-120 (154)
304 2ocy_A RAB guanine nucleotide 23.9 1.2E+02 0.004 26.6 5.5 45 70-114 42-86 (154)
305 3he4_A Synzip6; heterodimeric 23.9 1.8E+02 0.0062 20.3 5.3 30 69-98 21-50 (56)
306 2oxj_A Hybrid alpha/beta pepti 23.8 1.4E+02 0.0046 19.6 4.3 23 74-96 3-25 (34)
307 1lwu_B Fibrinogen beta chain; 23.7 56 0.0019 32.0 3.8 19 228-246 158-176 (323)
308 4ath_A MITF, microphthalmia-as 23.7 1.5E+02 0.0051 23.3 5.5 31 65-95 49-79 (83)
309 3qh9_A Liprin-beta-2; coiled-c 23.6 1.3E+02 0.0045 23.5 5.1 33 79-111 19-51 (81)
310 1o7q_A N-acetyllactosaminide a 23.4 5E+02 0.017 24.9 11.1 112 133-255 28-154 (289)
311 4ghu_A TNF receptor-associated 23.2 90 0.0031 27.9 4.8 32 69-100 4-35 (198)
312 3ioh_A Histo-blood group ABO s 23.0 1.4E+02 0.0048 28.9 6.3 109 136-255 41-163 (298)
313 3rjz_A N-type ATP pyrophosphat 22.9 1.8E+02 0.0063 26.9 7.1 70 168-253 78-152 (237)
314 1m1j_C Fibrinogen gamma chain; 22.9 1.9E+02 0.0064 29.2 7.6 51 66-116 85-135 (409)
315 1go4_E MAD1 (mitotic arrest de 22.3 1.2E+02 0.004 24.7 4.8 28 72-99 12-39 (100)
316 2zxx_A Geminin; coiled-coil, c 22.3 1.3E+02 0.0043 23.5 4.8 36 65-100 41-76 (79)
317 3mq9_A Bone marrow stromal ant 22.3 96 0.0033 31.0 5.4 52 65-116 397-452 (471)
318 3ni0_A Bone marrow stromal ant 22.2 2E+02 0.0069 23.2 6.0 21 79-99 67-87 (99)
319 3tqd_A 3-deoxy-manno-octuloson 22.2 2.5E+02 0.0084 25.9 7.9 40 167-206 35-74 (256)
320 1i6z_A BAG-family molecular ch 22.2 2.3E+02 0.0078 24.3 6.8 44 62-106 12-55 (135)
321 3bbo_J Ribosomal protein L9; l 22.1 23 0.00078 32.4 0.6 32 64-95 90-121 (197)
322 3jsv_C NF-kappa-B essential mo 22.1 3E+02 0.01 22.1 7.1 25 69-93 6-30 (94)
323 3pvv_A Chromosomal replication 22.0 95 0.0032 25.0 4.3 27 72-98 72-98 (101)
324 3csx_A Putative uncharacterize 22.0 66 0.0022 25.3 3.1 37 59-95 9-45 (81)
325 3hcw_A Maltose operon transcri 21.9 4.2E+02 0.015 23.7 9.5 94 145-242 32-132 (295)
326 1fo8_A Alpha-1,3-mannosyl-glyc 21.8 2.9E+02 0.0099 26.9 8.6 105 155-262 5-122 (343)
327 4gmk_A Ribose-5-phosphate isom 21.7 1.6E+02 0.0055 27.4 6.3 67 142-209 6-76 (228)
328 3huu_A Transcription regulator 21.7 3.1E+02 0.011 24.7 8.5 93 146-242 48-145 (305)
329 3uux_B Mitochondrial division 21.6 2E+02 0.0069 26.9 6.9 47 67-113 172-218 (242)
330 1aq5_A Matrilin-1, CMP, cartil 21.5 1.1E+02 0.0039 21.4 4.0 19 73-91 24-42 (47)
331 3viq_A SWI5-dependent recombin 21.5 1.8E+02 0.0063 24.3 6.1 35 70-104 5-39 (122)
332 2l5g_A GPS2 protein, G protein 21.5 1E+02 0.0035 20.6 3.4 22 83-104 12-33 (38)
333 1ca9_A TRAF2, protein (TNF rec 21.3 90 0.0031 27.4 4.4 35 67-101 5-39 (192)
334 2oto_A M protein; helical coil 21.3 2.8E+02 0.0095 23.6 7.5 19 81-99 52-70 (155)
335 3jy6_A Transcriptional regulat 21.3 4.3E+02 0.015 23.3 11.1 86 153-242 37-124 (276)
336 3lss_A Seryl-tRNA synthetase; 21.1 1.7E+02 0.0057 30.2 6.9 30 85-114 109-139 (484)
337 1am9_A Srebp-1A, protein (ster 21.1 1.1E+02 0.0037 23.6 4.3 36 64-99 39-77 (82)
338 3k8d_A 3-deoxy-manno-octuloson 21.1 2.6E+02 0.009 25.8 7.9 40 167-206 44-83 (264)
339 2k1a_A Integrin alpha-IIB; sin 20.9 79 0.0027 21.7 3.0 29 14-42 11-40 (42)
340 3mud_A DNA repair protein XRCC 20.6 92 0.0032 27.9 4.2 19 77-95 133-151 (175)
341 2k48_A Nucleoprotein; viral pr 20.5 1.5E+02 0.0052 24.3 5.1 35 65-101 30-64 (107)
342 3qk7_A Transcriptional regulat 20.5 2.4E+02 0.0083 25.4 7.4 83 153-242 40-127 (294)
343 2k48_A Nucleoprotein; viral pr 20.5 1.8E+02 0.0062 23.8 5.5 29 64-92 34-62 (107)
344 3qne_A Seryl-tRNA synthetase, 20.1 1.1E+02 0.0037 31.7 5.2 35 64-98 32-66 (485)
345 3l49_A ABC sugar (ribose) tran 20.1 4.5E+02 0.016 23.2 11.9 65 145-210 25-95 (291)
No 1
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=98.01 E-value=0.00011 Score=71.14 Aligned_cols=160 Identities=23% Similarity=0.309 Sum_probs=98.3
Q ss_pred CeEEEE-EcCcchHHHHHHHHHHHHHcCCC-cEEEEEe---CHHHHHHHHHCCCCEEEeCCCCCcccc----cccCcchh
Q 014357 154 KELIVA-LANSNVKSMLEVWSTNIKRVGIT-NYLVVAL---DDQTAEYCKTNDIPVYQRDPDEGIDSI----ARKGGNHA 224 (426)
Q Consensus 154 ~~VIvt-~~N~~~~d~~~Nwl~slkr~Gi~-n~lVvAl---D~~a~~~c~~~g~~c~~~~~~~g~d~~----~gs~~f~~ 224 (426)
+...|| .+|.+|..-+...+.|+++.|-+ .++|+.. +++..+.+++.+..+...+.....+.. .+.+.+ .
T Consensus 4 ~~AyvTl~td~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~l~~~~~~~~~~~~rp~~-~ 82 (263)
T 3u2u_A 4 DQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPEL-G 82 (263)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHSSEEEECCCCCCCCHHHHHHTTCTTG-G
T ss_pred ceEEEEEEECHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHcCCeEEEeeecCCcchhhhhhhcCcch-h
Confidence 444455 56889999999999999998854 3444443 457777888887666655432211110 011222 3
Q ss_pred hHhhHHHHHHHHHhcCc-ceEEecccEEeecCcccccccCCcEeeccCCCCCCcccCCCCCCCCCccchhhhccccccee
Q 014357 225 VSGLKFRVLREFLQLDY-SVLLSDIDIVFLQNPFEYLYRDSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRIWV 303 (426)
Q Consensus 225 m~~~K~~~l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~daDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~~~~~~~ 303 (426)
.++.|+.+-. ++ .| .||+.|+|++.++|.-+.|..+ .+....| + +|+. .
T Consensus 83 ~~~~kl~~~~-l~--~~~~vlylD~D~~v~~~~~~Lf~~~-~~aA~~d----------------~--~~~~--------~ 132 (263)
T 3u2u_A 83 VTLTKLHCWS-LT--QYSKCVFMDADTLVLANIDDLFDRE-ELSAAPD----------------P--GWPD--------C 132 (263)
T ss_dssp GGGGGGGGGG-CT--TCSEEEEECTTEEECSCCGGGGGSC-SSEEEEC----------------T--TSTT--------S
T ss_pred HHhHHHHhcc-cc--CcceEEEEcCCEeeccCHHHHhCCC-cceEecc----------------C--CCCc--------c
Confidence 4555655543 22 46 5999999999999988777644 2222222 1 2332 4
Q ss_pred cceeEEEEecChhHHHHHHHHHHHhCCCCCCchHHHHHHhc
Q 014357 304 FNSGFFYIRPTIPSIELLDRVADRLGKEKAWDQAVFNEELF 344 (426)
Q Consensus 304 ~NtGf~y~R~T~~s~~fl~~w~~rl~~~~~~DQ~afN~ll~ 344 (426)
+|+|+|.+.|+...-+-+-+.......-...||.++|.++.
T Consensus 133 fNsGv~li~p~~~~~~~l~~~~~~~~~~~~~DQd~LN~~f~ 173 (263)
T 3u2u_A 133 FNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFS 173 (263)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHHCCTTSSHHHHHHHHTT
T ss_pred ccCeEEEEcccHHHHHHHHHHHHhcCCCCcccHHHHHHHhc
Confidence 89999999997544432323222223334679999999884
No 2
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=97.98 E-value=0.0001 Score=73.46 Aligned_cols=155 Identities=20% Similarity=0.251 Sum_probs=94.8
Q ss_pred EEEEcCcchHHHHHHHHHHHHHcCCC-cEEEEEeC---HHHHHHHHHCCCCEEEeCCCCCcccc---cccCcchhhHhhH
Q 014357 157 IVALANSNVKSMLEVWSTNIKRVGIT-NYLVVALD---DQTAEYCKTNDIPVYQRDPDEGIDSI---ARKGGNHAVSGLK 229 (426)
Q Consensus 157 Ivt~~N~~~~d~~~Nwl~slkr~Gi~-n~lVvAlD---~~a~~~c~~~g~~c~~~~~~~g~d~~---~gs~~f~~m~~~K 229 (426)
|+.++|.+|..-+..-+.|+++.+-+ .++|+..| ++..+.+++.+..+..++........ .........+..|
T Consensus 7 vt~~~d~~Yl~~a~vl~~SL~~~~s~~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~~~~~~~~~~~~~t~~K 86 (333)
T 1ll2_A 7 VTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTK 86 (333)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGGHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchhhcccccccchHHHHHH
Confidence 44457999999999999999988743 45555543 56667777777655554432111100 0001112345566
Q ss_pred HHHHHHHHhcCc-ceEEecccEEeecCcccccccCCcEeeccCCCCCCcccCCCCCCCCCccchhhhcccccceecceeE
Q 014357 230 FRVLREFLQLDY-SVLLSDIDIVFLQNPFEYLYRDSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRIWVFNSGF 308 (426)
Q Consensus 230 ~~~l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~daDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~~~~~~~~NtGf 308 (426)
+.+.. + ..| .||+.|+|++.++|+-+.|..+ .+....| .+|+. .+|+|+
T Consensus 87 l~i~~-l--~~ydrvlYLDaD~lv~~di~eLf~~~-~~aAv~d------------------~~~~~--------~fNsGv 136 (333)
T 1ll2_A 87 LHCWS-L--TQYSKCVFMDADTLVLANIDDLFERE-ELSAAPD------------------PGWPD--------CFNSGV 136 (333)
T ss_dssp GGGGG-C--TTCSEEEEECTTEEECSCCGGGGGSC-SSEEEEC------------------SSSTT--------SEEEEE
T ss_pred HHHhH-h--cCCCeEEEEeCCEEeccCHHHHhCCC-ceeEEec------------------CCCCc--------ceeeeE
Confidence 55543 2 355 5999999999999998888643 2222122 12332 489999
Q ss_pred EEEecChhHHHHHHHHHHHh---CCCCCCchHHHHHHhc
Q 014357 309 FYIRPTIPSIELLDRVADRL---GKEKAWDQAVFNEELF 344 (426)
Q Consensus 309 ~y~R~T~~s~~fl~~w~~rl---~~~~~~DQ~afN~ll~ 344 (426)
|.++++...- +.+.+.+ ..-...||.++|.++.
T Consensus 137 mlin~~~~~~---~~l~~~~~~~~~~~~~DQ~~LN~~f~ 172 (333)
T 1ll2_A 137 FVYQPSVETY---NQLLHVASEQGSFDGGDQGLLNTFFN 172 (333)
T ss_dssp EEECCCHHHH---HHHHHHHHHTCCTTSSHHHHHHHHTT
T ss_pred EEEeCCHHHH---HHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 9999985443 3333322 2224579999999763
No 3
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=97.13 E-value=0.0034 Score=61.33 Aligned_cols=174 Identities=15% Similarity=0.150 Sum_probs=92.5
Q ss_pred EEEEcCcchHHHHHHHHHHH-HHcC-CC-cEEEEEeC--HHHHHHHHHC----CCCEEEeCCCCC-cccccc-cCcchhh
Q 014357 157 IVALANSNVKSMLEVWSTNI-KRVG-IT-NYLVVALD--DQTAEYCKTN----DIPVYQRDPDEG-IDSIAR-KGGNHAV 225 (426)
Q Consensus 157 Ivt~~N~~~~d~~~Nwl~sl-kr~G-i~-n~lVvAlD--~~a~~~c~~~----g~~c~~~~~~~g-~d~~~g-s~~f~~m 225 (426)
|+..+|.+|...+...+.|+ .+.. -+ ++.|++.| ++..+.+++. +..+...+.+.. ...... ..-+...
T Consensus 3 I~~~~d~~Y~~~~~vli~Sl~l~~~~~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~ 82 (311)
T 1g9r_A 3 IVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNIRHISIT 82 (311)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHTCTTSCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGGGGTTSCCCCTTCCGG
T ss_pred EEEECCHhHHHHHHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHHHHhcCccccccCCHH
Confidence 56778999999999999999 4332 22 34555544 5666666654 443322221110 000000 1112334
Q ss_pred HhhHHHHHHHHHhcCc-ceEEecccEEeecCcccccccC---CcEeeccCCCCCCcccCCCCCCCCCccchhhh-ccccc
Q 014357 226 SGLKFRVLREFLQLDY-SVLLSDIDIVFLQNPFEYLYRD---SDVESMTDGHNNMTAYGYNDVFDEPAMGWARY-AHTMR 300 (426)
Q Consensus 226 ~~~K~~~l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~d---aDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~-a~~~~ 300 (426)
+..|+.+ -+++. .+ .||+.|+|++.++|.-+.+.-+ .-+.+..|..... .+ .|... +....
T Consensus 83 ~y~Rl~l-~~ll~-~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~----------~~--~~~~~~~~~~~ 148 (311)
T 1g9r_A 83 TYARLKL-GEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVER----------QE--GYKQKIGMADG 148 (311)
T ss_dssp GGGGGGH-HHHCC-SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHT----------ST--THHHHTTCCTT
T ss_pred HHHHHHH-HHHhh-hcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhh----------hH--HHHHhcCCCCC
Confidence 5556544 44443 55 5999999999999988877542 2233333432100 00 01000 00001
Q ss_pred ceecceeEEEEecCh----hHHHHHHHHHHHhC-CCCCCchHHHHHHhc
Q 014357 301 IWVFNSGFFYIRPTI----PSIELLDRVADRLG-KEKAWDQAVFNEELF 344 (426)
Q Consensus 301 ~~~~NtGf~y~R~T~----~s~~fl~~w~~rl~-~~~~~DQ~afN~ll~ 344 (426)
...+|+|+|.+.++. ...+-+..|..... .-...||+++|.++.
T Consensus 149 ~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~lN~~f~ 197 (311)
T 1g9r_A 149 EYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGLFK 197 (311)
T ss_dssp SCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSHHHHHHHHHHT
T ss_pred CceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCcCccCCcCHHHHHHc
Confidence 125899999998753 12233334544332 234569999998773
No 4
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=96.91 E-value=0.0082 Score=57.87 Aligned_cols=230 Identities=12% Similarity=0.096 Sum_probs=109.0
Q ss_pred EEEEcCcchHHHHHHHHHHHHHcCC-CcE--EEEEeC--HHHHHHHHH----CCCC--EEEeCCCCCcccccccCcchhh
Q 014357 157 IVALANSNVKSMLEVWSTNIKRVGI-TNY--LVVALD--DQTAEYCKT----NDIP--VYQRDPDEGIDSIARKGGNHAV 225 (426)
Q Consensus 157 Ivt~~N~~~~d~~~Nwl~slkr~Gi-~n~--lVvAlD--~~a~~~c~~----~g~~--c~~~~~~~g~d~~~gs~~f~~m 225 (426)
|+.++|.+|...+..-+.|+.+.+- .++ .|+.-+ ++..+.+.+ .|.. .+.++... ......+.-+...
T Consensus 8 I~~~~d~~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~s~~ 86 (276)
T 3tzt_A 8 LLLTLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDL-FSFAKVTDRYPKE 86 (276)
T ss_dssp EEEECCGGGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC--------------CHH
T ss_pred EEEEeCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCHHH-HhcCccccccCHH
Confidence 6788999999999999999987764 333 344432 344443333 3432 22222210 1100011122333
Q ss_pred HhhHHHHHHHHHhcCc-ceEEecccEEeecCcccccccC---CcEeeccCCCCCCcccCCCCCCCCCccchhhhcccccc
Q 014357 226 SGLKFRVLREFLQLDY-SVLLSDIDIVFLQNPFEYLYRD---SDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRI 301 (426)
Q Consensus 226 ~~~K~~~l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~d---aDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~~~~~ 301 (426)
+..|+. +-+++...+ .||+.|+|++.++|.-+.+.-+ .-+.+..|+..... ...... .+++.. .
T Consensus 87 ~~~rl~-~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~----~~~~~~--~~l~~~-----~ 154 (276)
T 3tzt_A 87 MYYRLL-AGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDM----ANNVNR--IRLGTD-----T 154 (276)
T ss_dssp HHHHHT-HHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC------------------------------
T ss_pred HHHHHH-HHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchH----HHHHHH--hcCCCC-----C
Confidence 444433 334454456 6999999999999998877542 23444455432100 000000 000000 1
Q ss_pred eecceeEEEEecCh-----hHHHHHHHHHHHhC-CCCCCchHHHHHHhcCCCCCCCCCccceEEeccc--cccCCCce--
Q 014357 302 WVFNSGFFYIRPTI-----PSIELLDRVADRLG-KEKAWDQAVFNEELFFPSHPGYYGLHASKRVMDF--YLFMNSKV-- 371 (426)
Q Consensus 302 ~~~NtGf~y~R~T~-----~s~~fl~~w~~rl~-~~~~~DQ~afN~ll~~ps~~~~~gl~v~v~~Lp~--~~F~nG~~-- 371 (426)
-.+|+|++.+..+. -+.+++ .|...-. .-...||+++|.++. + .+..||. ..+..|..
T Consensus 155 ~yfNsGV~linl~~~R~~~~~~~~~-~~~~~~~~~~~~~DQd~LN~~f~--------~---~~~~Lp~~~wN~~~~~~~~ 222 (276)
T 3tzt_A 155 DYYNSGLLLINLKRAREEIDPDEIF-SFVEDNHMNLLLPDQDILNAMYG--------D---RIYPLDDLIYNYDARNYSS 222 (276)
T ss_dssp -CEEEEEEEEEHHHHHHHCCHHHHH-HHHHHC--------CHHHHHHHG--------G---GEEEEEHHHHSEETTCHHH
T ss_pred CeEEeeEEEEEHHHHHhhhHHHHHH-HHHHhccccccCCChhHHHHHHh--------C---CEEECCchheeeecccchh
Confidence 26999999998753 122222 3322211 123579999998874 1 2577874 45554431
Q ss_pred eh-hhc-chhhhccCCCeEEEEeCCc-----cChHHHHHHhhhhhcc
Q 014357 372 LF-KTV-RKDANLKKLKPVVVHVNYH-----PDKFPRMLAIVEFYVN 411 (426)
Q Consensus 372 ~F-~~~-R~~~~~~~~~P~iVH~N~~-----~~K~~Rlre~~~wyl~ 411 (426)
|. ... +...+.....|.++|.+-. ..-.+++|+.-..|.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~ 269 (276)
T 3tzt_A 223 YLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMS 269 (276)
T ss_dssp HHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHH
T ss_pred hhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHH
Confidence 11 000 0000111347999998763 2223455555444443
No 5
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=94.43 E-value=0.039 Score=40.39 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 59 SSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 59 ~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
..|++..-+..|+.|...|..|+++|++|+.||+.||.
T Consensus 13 ~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 13 AATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677788899999999999999999999999998875
No 6
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=93.59 E-value=0.16 Score=39.47 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQ 115 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~ 115 (426)
..+...+..++.+|.+|+.+|++|+..|.-+...+++.+.++..+.+.
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788999999999999999999999999998888887776665554
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=93.23 E-value=0.17 Score=38.14 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
++...|..++..|+++|++|+.++..|+..++...
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999998866543
No 8
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=93.09 E-value=0.18 Score=37.89 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
+++..|..++..|+.+|++|+++|..|++.+....
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999998865543
No 9
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=92.87 E-value=0.21 Score=37.24 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
+++..|..++..|+.+|.+|+++|..|++.+....+
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999988765543
No 10
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=92.25 E-value=0.17 Score=37.86 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
-+++..|..++..|+.+|++|+.+|..|++.+....
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999999999999999998876544
No 11
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=92.24 E-value=0.17 Score=41.78 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 61 CESPERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 61 ~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
..|.|.+..|+.+|.+|+.||..|++++.+|..+|
T Consensus 8 ~~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 8 LFSREEADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33779999999999999999999999999999997
No 12
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=92.19 E-value=0.26 Score=38.99 Aligned_cols=47 Identities=23% Similarity=0.349 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
+...+..++.+|.+|+.+|+.|+..|.-+...+++++.++..+.+..
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999988888887776665543
No 13
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=92.10 E-value=0.16 Score=38.45 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
+++..|..++..|+.+|++|++|+..|++.|.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999988653
No 14
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=91.50 E-value=0.34 Score=38.98 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
.|...++.++..|++||+.|++||.+|+..++...+
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788899999999999999999999988776553
No 15
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=91.31 E-value=0.29 Score=32.61 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
+|.+-|+..+..|-.+|.+|+.||.-|++.|..
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 578889999999999999999999999988754
No 16
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=90.62 E-value=0.2 Score=36.77 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
+.+..|..++..|+++|++|++|+..|++.+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999998753
No 17
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=90.43 E-value=0.5 Score=29.99 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQL 91 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l 91 (426)
+..||+|++.|++|.+.|+=++.-|
T Consensus 4 iaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554444
No 18
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=90.10 E-value=0.57 Score=36.89 Aligned_cols=35 Identities=31% Similarity=0.341 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
.|...++..+..|++||+.|+++|..|+..+....
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999998877654
No 19
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=89.36 E-value=0.55 Score=30.90 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
||.+-|...+..|=.+|.+|++||.-|++=|
T Consensus 1 eRMnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5778888999999999999999999888754
No 20
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.30 E-value=0.82 Score=39.73 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
-++...|.+++..+++|...|+.++.++++|+..+++.....++++..|.++.
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888888888888888888887777777766665543
No 21
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=89.03 E-value=0.53 Score=34.30 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=25.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
+++..|..||++|++++.+|+++++....
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999877654
No 22
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=88.90 E-value=1.6 Score=34.61 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTA 93 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~ 93 (426)
-+.|..|+-++..|++||..|..++.+++.
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666777777777777777777777444
No 23
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=88.63 E-value=0.59 Score=31.10 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
+|.+-|...+..|-.+|.+|..||.-|++-|...|
T Consensus 1 eRMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 1 XEVKQLEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 47788888999999999999999998888765443
No 24
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=87.30 E-value=1.1 Score=28.47 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=25.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 73 DIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
|++.|++|.+.|+|++.-|.-.+.-..||
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 78899999999999999998888777777
No 25
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=87.25 E-value=1.5 Score=30.31 Aligned_cols=34 Identities=21% Similarity=0.421 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
+..|.+..+.|+.+|+||...|+-|+..-+...|
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4567788888888888888888887776555554
No 26
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.62 E-value=2.2 Score=34.94 Aligned_cols=48 Identities=23% Similarity=0.410 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMV 111 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~ 111 (426)
.+|+..+..+++.+++++..+..+|.+|+-|++..|..-+.++.++..
T Consensus 22 ~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 22 LDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888888888888888888777777766543
No 27
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=86.12 E-value=1.3 Score=30.33 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=24.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 014357 59 SSCESPERVNMLKSDIASLTEKNAELQKQVRQ 90 (426)
Q Consensus 59 ~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~ 90 (426)
...-|||.+..|.+|+..|++|.+.|+..+.-
T Consensus 14 kegfspeelaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 14 KEGFSPEELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888888877665443
No 28
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=85.36 E-value=1.5 Score=27.45 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
|..-+++|+-||..|+..|.||-.|+
T Consensus 4 lnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45568899999999999999998875
No 29
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=84.81 E-value=3.2 Score=30.07 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 63 SPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
|.+.+..|.+++.+|+.|-+.|..+|+.|+..++ +.|++|.
T Consensus 2 s~aki~~Lss~V~~L~~kVdqLssdV~al~~~v~---~ak~eA~ 42 (52)
T 1jcd_A 2 SNAKADQASSDAQTANAKADQASNDANAARSDAQ---AAKDDAA 42 (52)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3578899999999999999999999999998777 4444444
No 30
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=84.19 E-value=3.2 Score=35.80 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
.++.++|+.++..|+++.++|++....|..+++..++......+++...-..+
T Consensus 80 ~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~ 132 (142)
T 3gp4_A 80 EARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNVER 132 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccc
Confidence 58889999999999999999999999999999999988877776665544443
No 31
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=84.05 E-value=0.78 Score=33.80 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
..+..++..+.++|++|++|+.+|++||
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4566777888888888888888888765
No 32
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=83.59 E-value=4.1 Score=31.83 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMV 111 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~ 111 (426)
.+|+..+..++...++++..+..+|..|+-|+++.|..-+.++.++..
T Consensus 19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788888888888888888888888888888888777777766543
No 33
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=83.30 E-value=3.8 Score=33.35 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVM 110 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~ 110 (426)
.+|+..+..+++.+++++..+..++..|+-|++..|..-+.++.++.
T Consensus 22 ~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 22 IDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777777777777777776666665544
No 34
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=83.00 E-value=2 Score=35.64 Aligned_cols=39 Identities=10% Similarity=0.233 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQ 104 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~ 104 (426)
-+..|+.|+++.+.+.++|.+|+.+|+.++.-.|+..+-
T Consensus 5 s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDF 43 (106)
T 4e61_A 5 SLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREF 43 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999988873
No 35
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=82.82 E-value=3.1 Score=34.86 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQK 107 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~ 107 (426)
.--++.|+.++.+|...|.+|++.+|+|..+.+-.|...-.+..
T Consensus 34 ~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~ 77 (111)
T 2v66_B 34 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIV 77 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHh
Confidence 45578889999999999999999999998888877766655543
No 36
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=82.75 E-value=2.3 Score=28.85 Aligned_cols=30 Identities=43% Similarity=0.607 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
-|+.||.-+..|++.|+||+. |.+-|..|.
T Consensus 4 tvkelknyiqeleernaelkn----lkehlkfak 33 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELKN----LKEHLKFAK 33 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHh----HHHHHHHHH
Confidence 378999999999999999875 555555543
No 37
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=82.64 E-value=3.9 Score=29.50 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
.+|...|+.++.+|+++|+.|.+-+++-+++|...
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~L 42 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLAL 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999988777666666665443
No 38
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=82.38 E-value=1.4 Score=29.11 Aligned_cols=26 Identities=38% Similarity=0.539 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQL 91 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l 91 (426)
+.+..++++..|+++|+-|..||+-|
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 34566777777778887777777755
No 39
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=80.48 E-value=1.6 Score=34.15 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
.+=|+.|+.+...++++.++|++|...|..+|+..
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567777777777777777777777777777543
No 40
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=80.48 E-value=7.5 Score=26.67 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQV 88 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~ 88 (426)
-|..|..|+++|+.||+.|+|.-
T Consensus 4 lvaqlenevaslenenetlkkkn 26 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKN 26 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhc
Confidence 36778999999999999998863
No 41
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=79.83 E-value=3.7 Score=41.59 Aligned_cols=64 Identities=23% Similarity=0.333 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccCCcccccccccCCccc
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPFGTVKALRTNPTVV 134 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~~~~~~~~~~t~p~~~ 134 (426)
.+++..|+++..+++++.+++++++++|.++++..|+-...-.-++..+. |....+-.+| |.+.
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk-----gnIrV~vRvR--P~~~ 72 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR-----GNIRVYLRIR--PALK 72 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CSEEEEEEEC--CCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCeEEEEEeC--CCCC
Confidence 46788888888888999999999999999998888877776666666654 5555554444 6543
No 42
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=79.71 E-value=2.3 Score=27.81 Aligned_cols=29 Identities=28% Similarity=0.420 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
|.+-|...+..|-.+|.+|+.||.-|++=
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45567777888888888888888877764
No 43
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=79.24 E-value=1.9 Score=26.38 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=17.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 75 ASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 75 ~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
..|++||+.|+.++.-|+-.+.-.||
T Consensus 3 rrlkqknarlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhcC
Confidence 45677788888777777666555443
No 44
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=79.16 E-value=3.1 Score=27.31 Aligned_cols=31 Identities=6% Similarity=0.172 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
+|.+-|...+..|=.+|.+|+.||.-|++=|
T Consensus 1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4677788888888888888888888877644
No 45
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=78.72 E-value=2.7 Score=32.33 Aligned_cols=31 Identities=42% Similarity=0.479 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
+|..|+....++..||..|+.++..|+.++.
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445556666666666666554
No 46
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=77.46 E-value=0.95 Score=38.24 Aligned_cols=15 Identities=13% Similarity=-0.018 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhhc
Q 014357 20 IVIGVLVGCVFAFLF 34 (426)
Q Consensus 20 ~~vgv~lg~~~a~~~ 34 (426)
+++++++++++++++
T Consensus 65 ~~~~~~~~~~~~~~~ 79 (163)
T 2f95_B 65 IILLGINLGLVAATL 79 (163)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455555555544
No 47
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.23 E-value=10 Score=29.96 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGK 102 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~ 102 (426)
+||+.+-..++.|..|.+|||.+-..|.+..+.|..+.
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~ 50 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQR 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444444444444444444444444444444333
No 48
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=75.84 E-value=3.3 Score=35.18 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=25.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 76 SLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 76 ~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
+|-+++.+|.+|+++|+++|+.++|-+.-..
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~ 34 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETARKVEA 34 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888999999999999999988766544
No 49
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=75.67 E-value=3.2 Score=39.52 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
.+|++.|+.++.+|+++|.-|++++++++.++..++..-+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEle 92 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD 92 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888888888888888776665444
No 50
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=75.32 E-value=5.6 Score=28.94 Aligned_cols=52 Identities=31% Similarity=0.434 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHhhcccc
Q 014357 66 RVNMLKSDIASLTEK---------NAELQKQVRQLTAKLRLAEQGKD--QAQKQVMVLGEQHK 117 (426)
Q Consensus 66 r~~~l~~~~~~~~~~---------~~~l~~~~~~l~~kl~~a~qg~~--~a~~~~~~~~~~~~ 117 (426)
||+.|...++.|+++ .+||+|.-.||..|+....-|.+ ..++.+..|++.+|
T Consensus 3 rvkaleekvkaleekvkalggggrieelkkkweelkkkieelggggevkkveeevkkleeeik 65 (67)
T 1lq7_A 3 RVKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIK 65 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 677788888888776 46888888888888877665443 23455666665543
No 51
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=75.07 E-value=4.3 Score=26.66 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
|.+-|...+..|-.+|.+|..||.-|++-|
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 567777888888888888888888877643
No 52
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=74.40 E-value=5.2 Score=33.75 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
+|++.|+..+..+++..+.+++|+..+.+.++.+.|+
T Consensus 95 ~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 95 SQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4666666666666666666666666666666655543
No 53
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.93 E-value=8.9 Score=31.27 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVL 112 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~ 112 (426)
+++.-|+++++..+.+...|+.++.+-+.+-..||+.+.+.++.+..|
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555444445555555555555554444
No 54
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=73.92 E-value=6.1 Score=32.66 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 63 SPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
..+|+..||.|+.+|+++-.+|-++++.+++.|+..-.-..
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~~ 44 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTD 44 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 36899999999999999999999999999999988876543
No 55
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.91 E-value=8.3 Score=33.31 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQ 104 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~ 104 (426)
+-+..||.++.++..+++++++++.+|+++++..+.....
T Consensus 89 kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 89 KEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666665555544333
No 56
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=73.67 E-value=5.4 Score=26.03 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
|.+-|...+..|-.||.+|..||.-|++=
T Consensus 1 RMnQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34556666666667777777777666553
No 57
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.06 E-value=13 Score=30.26 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQ 115 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~ 115 (426)
...|+.++.+|+.+++...+++..|+++|....+....|+++...+...
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~E 55 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKE 55 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999887776544
No 58
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=73.00 E-value=5.2 Score=31.35 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
+=|+.|+.+...+.++++.|++|..+|..+|.
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44677777777777788888888888877765
No 59
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=73.00 E-value=15 Score=26.37 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
.-|-.|+..|++||..||+|+++=+..|...|....
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets 41 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEAS 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhh
Confidence 346789999999999999999999999988886543
No 60
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=72.98 E-value=5.7 Score=25.90 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
|.+-|...+..|=.+|.+|+.||.-|++=|
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445677777777788888888887776644
No 61
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=72.97 E-value=23 Score=35.57 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHHHHHHHHhhhhhHHH
Q 014357 64 PERVNMLKSDIASLTEKNAEL-------------QKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l-------------~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
.+.++.|+.++.+|+++.++| ++|+++|+++++..++-..+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 301 (426)
T 1lrz_A 246 DEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGK 301 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666 3445555555555544444443
No 62
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=72.61 E-value=6.6 Score=23.84 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 014357 69 MLKSDIASLTEKNAELQKQVRQL 91 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l 91 (426)
.||.|+..|+.|-..|+.+|++|
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 46666666666666666666665
No 63
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=71.20 E-value=14 Score=29.91 Aligned_cols=49 Identities=20% Similarity=0.292 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
+.|..|+..+..++.+-+....++.+...+|..+++-..+|+-++..|.
T Consensus 44 ~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLn 92 (101)
T 3u59_A 44 EEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLN 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555556666666666666666666665553
No 64
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=70.83 E-value=2.5 Score=40.21 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=22.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 73 DIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
++..+.+||++|++|+.+|++++..+++-+.+.+
T Consensus 20 ~~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~ 53 (255)
T 2j5u_A 20 DLKNTYTENQHLKERLEELAQLESEVADLKKENK 53 (255)
T ss_dssp ------CTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999998887776655544
No 65
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=70.70 E-value=5.3 Score=26.26 Aligned_cols=30 Identities=7% Similarity=0.285 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
+|.+-|...+..|=.+|.+|..||.-|++=
T Consensus 1 eRMnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 466777777888888888888888777654
No 66
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=70.54 E-value=4.4 Score=24.59 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 014357 82 AELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 82 ~~l~~~~~~l~~kl~~a~ 99 (426)
+||-|++.+|+|+|+...
T Consensus 4 delykeledlqerlrklr 21 (27)
T 3twe_A 4 DELYKELEDLQERLRKLR 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666666554
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.10 E-value=7.5 Score=39.56 Aligned_cols=47 Identities=23% Similarity=0.188 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQ 115 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~ 115 (426)
..+.++..++|||+.|+|++.|+..++..|.+--..|-.|-.+|++|
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (487)
T 3oja_A 439 MYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQ 485 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHh
Confidence 44566788889999999999999999999999888888777777665
No 68
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=69.95 E-value=8.3 Score=28.35 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
+++..|+++-..|..+...|+.|+..|...
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555544443
No 69
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.55 E-value=9.3 Score=39.69 Aligned_cols=43 Identities=23% Similarity=0.259 Sum_probs=21.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Q 014357 75 ASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHK 117 (426)
Q Consensus 75 ~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~ 117 (426)
.++++|+.++++++++.++++....|...++.+++..+.+...
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444444444445555555555555555555555554433
No 70
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=69.48 E-value=14 Score=32.95 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQ 115 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~ 115 (426)
=+.-|+...+.+++..+.+...++||.+|+..++..++..+++++.|-.+
T Consensus 28 ~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~ 77 (168)
T 3o0z_A 28 TAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAI 77 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666777777778888899999999999988888766543
No 71
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=69.34 E-value=12 Score=28.89 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
|++++..++.|++||.++++++.+.+..+.+.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ee 33 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDE 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999888776633
No 72
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=68.16 E-value=8.7 Score=31.35 Aligned_cols=38 Identities=21% Similarity=0.438 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
.+|...++.+++.|+++...+++++.+|+.+|+..-++
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 46777777777888888888888888887777765543
No 73
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=68.09 E-value=12 Score=34.76 Aligned_cols=44 Identities=11% Similarity=0.217 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQV 109 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~ 109 (426)
-++.|+.+...|++||..|..+.++|.+.+...-+.|.+.+.++
T Consensus 133 ~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L 176 (213)
T 1ik9_A 133 TIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDL 176 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999888888888663
No 74
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=67.98 E-value=18 Score=29.35 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
..|+..+..++.+.+.+..++.+...||..+++-...|+-++..|.
T Consensus 47 ~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~ 92 (101)
T 3u1c_A 47 VQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLN 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555555555555555555555543
No 75
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=67.96 E-value=12 Score=33.10 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=32.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Q 014357 77 LTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQ 115 (426)
Q Consensus 77 ~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~ 115 (426)
.+++-+.+..|++.|++||..||.-...|...+..|...
T Consensus 68 asqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~ 106 (155)
T 2efr_A 68 YSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKS 106 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677899999999999999999999998777666554
No 76
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=66.91 E-value=13 Score=37.82 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccCCcccccccccCCccc
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPFGTVKALRTNPTVV 134 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~~~~~~~~~~t~p~~~ 134 (426)
+.+..|+.+..++++++.+++.++++++++|...|.......-++..+. |....+-.+| |...
T Consensus 10 ~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~-----gnIrV~vRvR--P~~~ 72 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR-----DNIRVFCRIR--PPLE 72 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CSEEEEEEEC--CCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEEEcC--CCCc
Confidence 4556666666666666777777777777776666655555555566554 4454444444 6543
No 77
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=66.53 E-value=15 Score=26.30 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=19.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhHHHHHHH
Q 014357 59 SSCESPERVNMLKSDIASLTEKNAELQKQV 88 (426)
Q Consensus 59 ~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~ 88 (426)
..|| -|-..--.++..|+++.++||.|+
T Consensus 2 ~~~e--rrr~e~ld~l~~LEkqF~~LkEql 29 (49)
T 2xus_A 2 EDYE--RRRSECVSEMLDLEKQFSELKEKL 29 (49)
T ss_dssp ---C--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566 344555678899999999998886
No 78
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=66.51 E-value=12 Score=28.72 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
+|++++..++.|+.||.++++.+.+.+..+.+
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~e 34 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKE 34 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999988877663
No 79
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=66.36 E-value=8.2 Score=30.45 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
+++..+|+.++..++++.++|++....|..++...+.+
T Consensus 38 ~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~~ 75 (99)
T 1q08_A 38 QESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGT 75 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57889999999999999999999999999888776653
No 80
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=65.74 E-value=15 Score=33.72 Aligned_cols=67 Identities=21% Similarity=0.191 Sum_probs=46.6
Q ss_pred HHHHHHHHCCCCEEEeCCCCCcccccccCcchhhHhhHHHHHHHHHh-cCcc-eEEecccEEeec-Ccc---cccccCCc
Q 014357 192 QTAEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGLKFRVLREFLQ-LDYS-VLLSDIDIVFLQ-NPF---EYLYRDSD 265 (426)
Q Consensus 192 ~a~~~c~~~g~~c~~~~~~~g~d~~~gs~~f~~m~~~K~~~l~~vL~-lGy~-VL~sDvDVVWlr-nP~---~~~~~daD 265 (426)
.....|.+.|+++..... -..++..|..++..+|+ .||+ +++.|+|||=+. ||- ..+..++|
T Consensus 16 ~l~~~l~~~gi~~~l~~~------------~SlI~raRN~lv~~Fl~~~~~dhllfIDAD~~~I~FdPe~V~rLl~~g~D 83 (203)
T 2c0n_A 16 PLIDFLVKNDIEYVILSR------------RNHVAVQREIALDMFLEMKDYDTLAFLDEDVVPIEIDFQKVEAKFNEGYD 83 (203)
T ss_dssp HHHHHHHHTTCCEEEECC------------CSCHHHHHHHHHHHHHHCTTCCEEEEECTTEEEEECCHHHHHHHHHHTCS
T ss_pred HHHHHHHhCCCeEEEEcc------------ccchHHHHHHHHHHHHhcCCCCEEEEEeCCCCccccCHHHHHHHHhCCCC
Confidence 345678888988776443 13467789999999888 6985 899999965444 442 23344889
Q ss_pred Eeecc
Q 014357 266 VESMT 270 (426)
Q Consensus 266 i~~ss 270 (426)
|++.+
T Consensus 84 VV~Gs 88 (203)
T 2c0n_A 84 VVCGY 88 (203)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98744
No 81
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=65.58 E-value=11 Score=30.32 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
+..|.+|+..|.+||+++.+++..+.+|+
T Consensus 57 ~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 57 KTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555554444444443
No 82
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=65.01 E-value=4 Score=25.00 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=13.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 014357 76 SLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 76 ~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
.|+=||+.|...+.-|.+|+.-.
T Consensus 4 alefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHh
Confidence 45556666666666666665433
No 83
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=64.85 E-value=3.8 Score=32.01 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=23.8
Q ss_pred HHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 65 ERVNMLKSD---IASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 65 ~r~~~l~~~---~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
.++..|+.- |..|.+++.+|+.++.+|..+....++.
T Consensus 37 sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 37 SRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544 4677777777777777777765555543
No 84
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=63.98 E-value=17 Score=33.16 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
--++.|+.++..|.+.+..|++++++|..+.+-.|.
T Consensus 88 ~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr 123 (189)
T 2v71_A 88 KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 123 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 345666677777777777777776666666555553
No 85
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=63.97 E-value=9.4 Score=32.96 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
.++..+|+.++..|+++.++|++....|..++...++-..
T Consensus 94 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~ 133 (148)
T 3gpv_A 94 LHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEIS 133 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999887776443
No 86
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=63.84 E-value=13 Score=23.58 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLT 92 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~ 92 (426)
|..|..|+++.+-||-.|..+|..|+
T Consensus 3 vaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55677888888888877777777665
No 87
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=63.66 E-value=24 Score=31.46 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 014357 60 SCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVM 110 (426)
Q Consensus 60 ~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~ 110 (426)
-..+++.+++.+.=|+.+.++-++|.++|.+..+++..+.+--.+|++++.
T Consensus 66 ~gtt~~~i~~m~~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~ 116 (169)
T 3k29_A 66 DGTTSDAILKMKAYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELT 116 (169)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688899999988888888888888888888888777777777766544
No 88
>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F 1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...
Probab=62.71 E-value=12 Score=32.68 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
++-++.++.+.++++++.++.+++..++.++|.
T Consensus 41 ~~n~k~~e~~~~~~~~~~~~~~~~A~~~~~~L~ 73 (149)
T 3r8s_H 41 KKNIEFFEARRAELEAKLAEVLAAANARAEKIN 73 (149)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566778888888888888888888888777774
No 89
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=62.48 E-value=12 Score=30.08 Aligned_cols=33 Identities=9% Similarity=0.346 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
.+|...++.+++.|+++...+++++.+|+.+|+
T Consensus 71 ~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 71 QEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666676666677777766666654
No 90
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=62.44 E-value=12 Score=37.69 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccCCcccccccccC
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPFGTVKALRTN 130 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~~~~~~~~~~t~ 130 (426)
+..|+.++..|+++.++|++++.++++.++..++.-.+.+..-..| +..+..++.|
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l--------~n~~~elkgn 60 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL--------HNELQELRGN 60 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHcCCC
Confidence 4556666777777777777777776666666654443333333333 4555555554
No 91
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=62.27 E-value=29 Score=24.93 Aligned_cols=43 Identities=26% Similarity=0.257 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 71 KSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 71 ~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
..++..+..+++.|.++-..|.+-|+.|.+.-....+|+..|+
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555555555555556666655555555555555443
No 92
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=61.71 E-value=18 Score=32.92 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
|+.|.+|...|+++++....++..|+++|+.+++
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~ 55 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNA 55 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555444444444444444443
No 93
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=61.57 E-value=4 Score=39.99 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=23.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
+|+.+|++++++|++|+.+|+.+....+++
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~~k~ 214 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTANKA 214 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 388889999999999999997665555554
No 94
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=61.20 E-value=11 Score=24.86 Aligned_cols=29 Identities=7% Similarity=0.197 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
|.+-|...+..|=.+|.+|..||.-|++=
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45566677777777777777777766653
No 95
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=60.59 E-value=23 Score=29.74 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=15.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014357 78 TEKNAELQKQVRQLTAKLRLAEQGKDQAQKQ 108 (426)
Q Consensus 78 ~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~ 108 (426)
.++..||+-|+.+|.+||+.|+-.-++-.++
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555555555555555554444443333
No 96
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=60.54 E-value=16 Score=29.23 Aligned_cols=39 Identities=33% Similarity=0.406 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
...+.|++-+.+|+.+|++=.+.++||+.|++-+=+|-+
T Consensus 25 kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~ 63 (101)
T 1d7m_A 25 KQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLE 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344778888899999999999999999999888777765
No 97
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=60.37 E-value=16 Score=23.21 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=19.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 73 DIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
|++.+++|.+..+|++.-+.-.|.--.||.+
T Consensus 3 elaaikqelaaikkelaaikfelaaikqgag 33 (34)
T 3r4h_A 3 ELAAIKQELAAIKKELAAIKFELAAIKQGAG 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5666777777777777766666666667643
No 98
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=60.10 E-value=14 Score=34.73 Aligned_cols=54 Identities=11% Similarity=0.268 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 63 SPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
++.-.+.|+.|+..++++++.|.+++.++.+++...+....+++.++..+.+..
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l 141 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA 141 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788899999999999999999999999998888877777777766655543
No 99
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=59.97 E-value=15 Score=28.09 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
++++.|..++..|+++++.|..+...|.+.+....
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777766666655443
No 100
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=59.25 E-value=14 Score=33.08 Aligned_cols=37 Identities=11% Similarity=0.039 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 60 SCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 60 ~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
..-++|.-+.+++-..+-..+..+|++|+.+.+++|+
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~ 102 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYN 102 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666655555555566666666655555554
No 101
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=58.81 E-value=12 Score=29.28 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQL 91 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l 91 (426)
.+=++.|+.++..|++++++|+.++.+.
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666666666655544
No 102
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=57.88 E-value=14 Score=33.58 Aligned_cols=32 Identities=9% Similarity=0.213 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
.++++.|+.++..|+++|+-|+.|-++..+++
T Consensus 151 ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 151 LDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667788888888888888887777776665
No 103
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=57.78 E-value=9.6 Score=30.27 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
+=|+.|+.+...+..+.+.|++|...|..+|+..
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666665555666666666666665543
No 104
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I
Probab=57.61 E-value=16 Score=31.82 Aligned_cols=32 Identities=16% Similarity=0.363 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
++-++.++.+.++++++.++.+++..++.++|
T Consensus 40 ~~n~~~~e~~~~~~~~~~~~~~~~A~~~a~~L 71 (146)
T 1nkw_F 40 RTNMKTLEAQLRSIEKRQAQEKAVAEDLASRL 71 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67778888888888888877777777777776
No 105
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=56.68 E-value=24 Score=29.29 Aligned_cols=40 Identities=10% Similarity=0.110 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 61 CESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 61 ~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
-.+..-++.|+.+|.+.++-.++-..++.+|++++...+.
T Consensus 20 ~~~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 20 HMASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444578999999999999999999999999988766433
No 106
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=56.68 E-value=19 Score=28.47 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTA 93 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~ 93 (426)
.|..++.+++++++.|+++..+|++
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555544444
No 107
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=56.63 E-value=17 Score=28.93 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
.|+..|+.|=..|..+.++|++|+..|.+-
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443
No 108
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=56.59 E-value=28 Score=28.55 Aligned_cols=51 Identities=22% Similarity=0.217 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
-|..||..+..+++..++|+++.+|.+..+......-+..+.++..+.+++
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888888888877777666665555555555555554443
No 109
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=56.39 E-value=15 Score=31.61 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
+|+..|+.++..+++..+++++++..+.+.++...|
T Consensus 105 ~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 105 KRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777777777766666666554
No 110
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=55.84 E-value=18 Score=28.67 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=16.0
Q ss_pred HHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDI---ASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 64 ~~r~~~l~~~~---~~~~~~~~~l~~~~~~l~~k 94 (426)
..++..|+.-+ ..|++++..|..++..|..+
T Consensus 41 ~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~ 74 (88)
T 1nkp_A 41 APKVVILKKATAYILSVQAEEQKLISEEDLLRKR 74 (88)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665443 45555555555555444444
No 111
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=55.53 E-value=6 Score=32.91 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQ 90 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~ 90 (426)
+..|..||..|+=||-.||||++.
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678999999999999999999864
No 112
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=55.36 E-value=20 Score=28.15 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=11.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
++|...+.+|.+|..+++-|++++..
T Consensus 45 skL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 45 SQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 113
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=54.83 E-value=15 Score=31.89 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQ 87 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~ 87 (426)
++||..|..+++.+++|+++|+++
T Consensus 31 ~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 31 PKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666655555444444444443
No 114
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Probab=54.74 E-value=20 Score=31.34 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
++-++.++.+.++++++.++.+++..++.++|
T Consensus 41 ~~n~~~~e~~~~~~~~~~~~~~~~A~~~a~~L 72 (149)
T 1div_A 41 PANLKALEAQKQKEQRQAAEELANAKKLKEQL 72 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888888877777777777776
No 115
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=54.71 E-value=43 Score=27.88 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=24.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 75 ASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 75 ~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
..+.+++++=++||.+|+++++.+|+--...+
T Consensus 34 ~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lq 65 (112)
T 1x79_B 34 DFIKQSSEDSSHQISALVLRAQASEILLEELQ 65 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888999999999998886544444
No 116
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=54.58 E-value=24 Score=24.30 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 014357 71 KSDIASLTEKNAELQKQVRQLTA 93 (426)
Q Consensus 71 ~~~~~~~~~~~~~l~~~~~~l~~ 93 (426)
-.|+...+++.++|+++.++|++
T Consensus 15 drEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 15 DREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554
No 117
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=54.52 E-value=37 Score=29.78 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
+++...+..|+++.+.|+.++++|.+.++.-.+
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K 96 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNK 96 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666655544433
No 118
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=54.11 E-value=55 Score=25.21 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMV 111 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~ 111 (426)
+.......+++.+.+.|.+.+..|.+-|..++..-..|+..+..
T Consensus 30 ~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 30 KAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555555544455444443
No 119
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=53.84 E-value=39 Score=26.19 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHK 117 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~ 117 (426)
+|+..|...++=.+... .+|.+-+..-.+..+.-++|+..|.+..+
T Consensus 14 ~Ri~~LE~klAfqE~tI-------eeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 14 ARLVELETRLSFQEQAL-------TELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554444444 44444443333444444455555555544
No 120
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=53.73 E-value=10 Score=30.13 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
|++++++|+++.+.|.+|+.+++++
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554443
No 121
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=53.67 E-value=20 Score=24.50 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=10.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 014357 74 IASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 74 ~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
++.|+.|...|.|.+.-|..|||
T Consensus 22 laaleselqalekklaalksklq 44 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 122
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=53.60 E-value=26 Score=25.83 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
++|..|+.+-..|..+.+.|+.|+..|..-
T Consensus 30 ~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 30 AETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 123
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=53.58 E-value=25 Score=34.58 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
++.|..|+.+++........+++.|+++|...++...+-++++..|.+..
T Consensus 7 ~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443444444444444433
No 124
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=53.24 E-value=16 Score=29.49 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
+++...|+.++..|+++.++|++....|..++
T Consensus 74 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 105 (109)
T 1r8d_A 74 FDRKAALQSQKEILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888888888888888887775
No 125
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=53.10 E-value=10 Score=31.23 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=17.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 74 IASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 74 ~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
.++|+.++.+|++|+++|+++++...
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777777777765543
No 126
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=51.76 E-value=11 Score=27.90 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQL 91 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l 91 (426)
+|..|+++-..|..+...|+.|+..|
T Consensus 30 ~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 30 KVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 127
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=51.74 E-value=30 Score=25.65 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
.+...|+.+..+|.++-.+|.+++...+..
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544443
No 128
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=51.69 E-value=33 Score=23.64 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
.|-+.+..+..|.+--++|+++|+.|+...|.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888999999999999999999887764
No 129
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=51.25 E-value=27 Score=29.32 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=27.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 75 ASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 75 ~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
.+|++|.+--.|+|.||+.++...+|.-..|+.++.+|..+.
T Consensus 60 ~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 60 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555555566677777777777777777776666666554
No 130
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=51.04 E-value=13 Score=29.02 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=21.7
Q ss_pred HHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 66 RVNMLK---SDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 66 r~~~l~---~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
++..|+ .-|..|++++.+|..+...|..+.+...+
T Consensus 38 k~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 38 TLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 34577777777777777777766555443
No 131
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=50.95 E-value=60 Score=24.92 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 014357 59 SSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVL 112 (426)
Q Consensus 59 ~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~ 112 (426)
.|-|+..-+..|+..|....+|.......+++|...|+.-+....+-+.++-.+
T Consensus 13 ~~~~~mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 13 ASIEGRGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555558888887766666666666677777777766666666666555544
No 132
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=50.53 E-value=31 Score=32.30 Aligned_cols=54 Identities=9% Similarity=0.126 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHK 117 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~ 117 (426)
|..+..|+.++..++...+.++.++.++...+...|....+++..+..+.++..
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777777777777777777777777777777777766666666553
No 133
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=50.46 E-value=21 Score=21.62 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=15.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHH
Q 014357 76 SLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 76 ~~~~~~~~l~~~~~~l~~kl~ 96 (426)
.|-+|.++|++.++.|+.||+
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345667777788888888876
No 134
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=50.28 E-value=41 Score=31.46 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVL 112 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~ 112 (426)
..|.+.+|+++..|+.+.+..+.|.+.++..|..-.|.-.++.+|--.+
T Consensus 170 a~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 170 AFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3577888888888888888888888888888888888888887775443
No 135
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=50.14 E-value=43 Score=23.01 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=13.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 74 IASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 74 ~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
+..|+.+-.+|.....||.+|+...
T Consensus 5 l~eLE~r~k~le~~naeLEervstL 29 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTL 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544
No 136
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=50.03 E-value=43 Score=28.05 Aligned_cols=38 Identities=24% Similarity=0.228 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
||.+.|+.-++ .+.|.+.|++++.||+.+|+.++.+..
T Consensus 5 e~~~~~~~~~~-~e~e~~~l~~~~~el~~~l~~~~~~~~ 42 (125)
T 1joc_A 5 ERRALLERCLK-GEGEIEKLQTKVLELQRKLDNTTAAVQ 42 (125)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544443 355677777777777777776665543
No 137
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=49.95 E-value=24 Score=29.82 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 63 SPERVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
|+..++.|+.|+.++++++.-|++=-++-...-+
T Consensus 2 ~~~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFR 35 (123)
T 4dzo_A 2 SSKEVAELKKQVESAELKNQRLKEVFQTKIQEFR 35 (123)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777666655444444433
No 138
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=49.66 E-value=20 Score=30.42 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
.|.+..+-.+|..|+++.+||-+||.+|+++
T Consensus 97 ed~L~~~laqLe~ls~qL~~ls~~v~~L~~q 127 (140)
T 3iyn_Q 97 DDKLTALLAQLDSLTRELNVVSQQLLDLRQQ 127 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777777777644
No 139
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.46 E-value=34 Score=26.35 Aligned_cols=31 Identities=13% Similarity=0.063 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
+.....+..++++.+|...++++|+.+|+.-
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455666666666666666666666554
No 140
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=49.23 E-value=37 Score=35.32 Aligned_cols=26 Identities=23% Similarity=0.128 Sum_probs=17.1
Q ss_pred ceecceeEEEEecC-hhHHHHHHHHHH
Q 014357 301 IWVFNSGFFYIRPT-IPSIELLDRVAD 326 (426)
Q Consensus 301 ~~~~NtGf~y~R~T-~~s~~fl~~w~~ 326 (426)
.|...=.|.|.+|- +.+.+.++.+..
T Consensus 330 qF~kvE~~~f~~pe~e~s~~~~e~~l~ 356 (501)
T 1wle_A 330 HFTKVEMFGVTGPGLEQSSELLEEFLS 356 (501)
T ss_dssp EEEEEEEEEEECSSHHHHHHHHHHHHH
T ss_pred eeeeeeEEEEeCCcHHHHHHHHHHHHH
Confidence 34556677888886 567666666643
No 141
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.93 E-value=28 Score=36.01 Aligned_cols=27 Identities=7% Similarity=-0.074 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 71 KSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 71 ~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
+.+.+.+++++.++++++.++.++++.
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (597)
T 3oja_B 515 KERQAFKLRETQARRTEADAKQKETED 541 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHhhhhhhcchhh
Confidence 333344444444444444444444443
No 142
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=48.89 E-value=10 Score=29.37 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=14.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhh
Q 014357 78 TEKNAELQKQVRQLTAKLRLAEQGK 102 (426)
Q Consensus 78 ~~~~~~l~~~~~~l~~kl~~a~qg~ 102 (426)
.||-+.||.||.||.+|+...|+..
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN 38 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLEREN 38 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666655543
No 143
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=48.74 E-value=45 Score=26.21 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQV 109 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~ 109 (426)
.|..++..+..|.++|+=++.+++-+|....+...+....+
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777777666665555444443
No 144
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=48.71 E-value=19 Score=27.30 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
.+|+..|+.+|..-..++++|+.|+..+..=++
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455566666666666666665555555544443
No 145
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=48.58 E-value=11 Score=30.99 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTA 93 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~ 93 (426)
|.+.|+.++..+++|..+|++|++.|++
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444444444444444444444443
No 146
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=48.50 E-value=29 Score=22.76 Aligned_cols=28 Identities=4% Similarity=0.177 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTA 93 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~ 93 (426)
|.+-|...+..|-.||.+|..||.-|.+
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344555555555555555555555544
No 147
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=48.29 E-value=26 Score=30.05 Aligned_cols=40 Identities=5% Similarity=0.064 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
.+|..+|..+...|.++.++|++.++.|..+++..+++..
T Consensus 79 ~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~~~~ 118 (146)
T 3hh0_A 79 EVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQKEER 118 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 6788899999999999999999999999988877665544
No 148
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=47.80 E-value=26 Score=21.89 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=16.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 75 ASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 75 ~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
..|++|-+.|...+.-|+.||.-.|.|
T Consensus 4 ealekkcaalesklqalekklealehg 30 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALEHG 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 456666666666666666666655544
No 149
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=47.74 E-value=14 Score=33.48 Aligned_cols=48 Identities=29% Similarity=0.185 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
++++++.+.....+.|.-|...|+++|+..++...+-++|+..+..+.
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555555666666666667777777777777776677766666665
No 150
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=47.19 E-value=13 Score=31.63 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 71 KSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 71 ~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
.....+.++ .||+.++..|++|.+.|||-..-.+
T Consensus 26 ekrySeMS~--~EL~~EI~~L~EKaRKAEq~Gi~NE 59 (128)
T 1sf9_A 26 EKRYSQMTP--HELNTEIALLSEKARKAEQHGIINE 59 (128)
T ss_dssp HHHHHTCCH--HHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHcCH--HHHHHHHHHHHHHHHHHHHcCCccH
Confidence 344444443 6899999999999999998765544
No 151
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=46.97 E-value=46 Score=27.75 Aligned_cols=48 Identities=13% Similarity=0.166 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 014357 62 ESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQV 109 (426)
Q Consensus 62 ~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~ 109 (426)
...|=+..|+..+..+++..+.|.+++.++++++..-+++-.+.+++.
T Consensus 85 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~~ 132 (133)
T 1fxk_C 85 NFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAV 132 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445667899999999999999999999999999999998888877653
No 152
>2yxy_A Hypothetical conserved protein, GK0453; alpha and beta proteins (A+B) class, structural GENO unknown function, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=46.68 E-value=13 Score=31.02 Aligned_cols=25 Identities=40% Similarity=0.363 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 82 AELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 82 ~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
.||+.++..|++|.+.|||-..-.+
T Consensus 17 ~EL~~EI~~L~ekarKAEq~G~~nE 41 (115)
T 2yxy_A 17 EELQQEIAMLTEKARKAEQMGMVNE 41 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccH
Confidence 6899999999999999998766544
No 153
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=46.63 E-value=72 Score=25.09 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014357 63 SPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQ 108 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~ 108 (426)
+.+.+..++.++..++++.+...+..++|.++.....+.++.-+.|
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777777777777777777777666655
No 154
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=46.24 E-value=46 Score=27.65 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=28.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014357 73 DIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQ 108 (426)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~ 108 (426)
++..|.++...|++.-..|..++|..||+.|.-+.+
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 466778888888888888888888888888876654
No 155
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=46.23 E-value=66 Score=25.73 Aligned_cols=50 Identities=24% Similarity=0.242 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQ 115 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~ 115 (426)
|..-|++.+..=+--.++|-||..||..-|+..++...+-.+.+..+...
T Consensus 5 ~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~ak 54 (101)
T 1d7m_A 5 RLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAK 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444678999999999999998887776666665555443
No 156
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=46.18 E-value=9.4 Score=35.94 Aligned_cols=25 Identities=12% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
.+..++.+|.++|++++++|+++++
T Consensus 256 ~~~~~~~~~~~~l~~~~~~l~~~l~ 280 (285)
T 3rvy_A 256 SHEDNINNEIIKLREEIVELKELIK 280 (285)
T ss_dssp -------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555556666555544
No 157
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=45.98 E-value=62 Score=25.97 Aligned_cols=33 Identities=9% Similarity=0.215 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
.|..+|..|++++++|..++..+++..+..++.
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 455666777777777777777777666655543
No 158
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=45.57 E-value=35 Score=22.46 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=13.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHh
Q 014357 78 TEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 78 ~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
.+||++.++.+.||+.+..+.|
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le 27 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLE 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHH
Confidence 4566666666666666654444
No 159
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=44.93 E-value=59 Score=29.49 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=14.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHH
Q 014357 74 IASLTEKNAELQKQVRQLTAKLRLAEQGKDQA 105 (426)
Q Consensus 74 ~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a 105 (426)
+..|.++.+.|++....|+.+++..||..|.-
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdl 121 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 121 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33344444444444444444444444444433
No 160
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=44.82 E-value=25 Score=32.98 Aligned_cols=41 Identities=12% Similarity=0.098 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 63 SPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
+.++...|..++..|+++.++|++.+..|..+++..+.+..
T Consensus 74 ~~~~~~~L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~~~~~ 114 (249)
T 3qao_A 74 LFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEIT 114 (249)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 35788999999999999999999999999999988776643
No 161
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=44.59 E-value=23 Score=22.77 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
||..+..|+|.---|.=.|..|.||
T Consensus 6 lkekvsalkeqflmlmfkvsalkek 30 (36)
T 3tq2_A 6 LKEKVSALKEQFLMLMFKVSALKEK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444
No 162
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.57 E-value=57 Score=28.66 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
+...|..+++..+.|...|+.++.+-+.+-..||+.+.+.++.+..|+
T Consensus 45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555556666666665555443
No 163
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=44.44 E-value=19 Score=29.04 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
.++...|+.++..++++.++|++....|..++
T Consensus 73 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 104 (108)
T 2vz4_A 73 ADPRAHLRRQHELLSARIGKLQKMAAAVEQAM 104 (108)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888888887765
No 164
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=44.38 E-value=38 Score=34.22 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhH
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQ 104 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~ 104 (426)
..|+.|+..+++++.+|+++++++++.+...++.-.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777766666655544333
No 165
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=44.29 E-value=68 Score=25.41 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH---------HHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQ---------VRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~---------~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
.|+..|+++..+|+.+.++++.| +.+--.+|....-=||-+|.-+-.++
T Consensus 8 ~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA 65 (85)
T 3viq_B 8 SRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVA 65 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 67888888888888888888653 55566677777777777775544443
No 166
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=44.19 E-value=30 Score=30.79 Aligned_cols=36 Identities=8% Similarity=0.214 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGK 102 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~ 102 (426)
+..|+.++.+++...+.++.|+++|+++++..|.+.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETAS 37 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 356788888888888888999999999998888764
No 167
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=43.90 E-value=50 Score=20.83 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
|+.||..+..|+-.|-.-+..|..|+-|
T Consensus 3 vqalkkrvqalkarnyaakqkvqalrhk 30 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALRHK 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4556666666666665555555444433
No 168
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=43.84 E-value=33 Score=31.75 Aligned_cols=39 Identities=10% Similarity=0.035 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 63 SPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
+.++.++|+.++..|+++.++|++..+.|..+++..+++
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~ 115 (278)
T 1r8e_A 77 MEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQ 115 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888889998888888888888887766543
No 169
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=43.70 E-value=88 Score=24.90 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=11.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 014357 72 SDIASLTEKNAELQKQVRQLTA 93 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~ 93 (426)
..+..|+++|..|..+++++++
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555556666555555544
No 170
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=43.65 E-value=1e+02 Score=24.05 Aligned_cols=50 Identities=16% Similarity=0.307 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
-|.+.--+.|+.+|.+...||++=-.-|.+-+...++.+.+.++-+..|.
T Consensus 17 ~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 17 KEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666778899999999999999888888888888999988888776654
No 171
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=43.62 E-value=19 Score=26.15 Aligned_cols=27 Identities=15% Similarity=0.259 Sum_probs=20.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 74 IASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 74 ~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
|.++.++.++|.+|..+|+++++.+++
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788999999999999999887764
No 172
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=43.60 E-value=28 Score=30.21 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
.|...+..|.+++.+|+||+.+|++++...
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999996554
No 173
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=43.52 E-value=37 Score=38.68 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=17.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 014357 77 LTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVL 112 (426)
Q Consensus 77 ~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~ 112 (426)
+++|+.+++.++++|++++...++.-..+.|+...+
T Consensus 975 ~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555444444444444443
No 174
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=43.20 E-value=18 Score=28.01 Aligned_cols=29 Identities=38% Similarity=0.586 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTA 93 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~ 93 (426)
|-|..||.+|+.|.++|..|+.|-+=|+.
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888888777776665543
No 175
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=43.19 E-value=87 Score=24.54 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVL 112 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~ 112 (426)
.+..||.+++..|-.+.++++|...|.+..+.....-++++..|
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777777777777776666655555555555554
No 176
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=43.03 E-value=64 Score=33.01 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 82 AELQKQVRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 82 ~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
++|++|+++|.+++..+|+...++++++..+.
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666655554443
No 177
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=42.99 E-value=79 Score=22.08 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 60 SCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 60 ~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
+++|.|--+.|+.++-+|+.-.+...-|+.-+.+||.+-|.-
T Consensus 2 ~~Vs~eeF~~L~rRVlqlE~~l~gI~S~idav~~Kl~~~Er~ 43 (45)
T 4gif_A 2 GWVSGEEFYMLTRRVLQLETVLEGVVSQIDAVGSKLKMLERK 43 (45)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999999988863
No 178
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=42.94 E-value=95 Score=27.77 Aligned_cols=85 Identities=8% Similarity=0.052 Sum_probs=51.0
Q ss_pred CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEeCHHHHH-HHHHCCCCEEEeCCCCCcccccccCcchhhHhhHHH
Q 014357 153 GKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDDQTAE-YCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGLKFR 231 (426)
Q Consensus 153 d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAlD~~a~~-~c~~~g~~c~~~~~~~g~d~~~gs~~f~~m~~~K~~ 231 (426)
+-.+++..++... +-....++.+...+++-+++...+++..+ .+.+.|+|++.++........-+ .++...+. .
T Consensus 38 g~~~~~~~~~~~~-~~~~~~~~~l~~~~~dgiIi~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~V~-~D~~~~g~---~ 112 (277)
T 3e61_A 38 GYQVLIGNSDNDI-KKAQGYLATFVSHNCTGMISTAFNENIIENTLTDHHIPFVFIDRINNEHNGIS-TNHFKGGQ---L 112 (277)
T ss_dssp TCCEEEEECTTCH-HHHHHHHHHHHHTTCSEEEECGGGHHHHHHHHHHC-CCEEEGGGCC----------HHHHHH---H
T ss_pred CCEEEEEeCCCCH-HHHHHHHHHHHhCCCCEEEEecCChHHHHHHHHcCCCCEEEEeccCCCCCeEE-echHHHHH---H
Confidence 4566666555543 23345566666678999999999999999 99999999998764421111111 12222222 2
Q ss_pred HHHHHHhcCcc
Q 014357 232 VLREFLQLDYS 242 (426)
Q Consensus 232 ~l~~vL~lGy~ 242 (426)
....++++|+.
T Consensus 113 a~~~L~~~G~~ 123 (277)
T 3e61_A 113 QAEVVRKGKGK 123 (277)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHCCCC
Confidence 56667778984
No 179
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=42.87 E-value=23 Score=34.82 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
.++++.|+..+.++++|.++|+.+|.+|++++
T Consensus 17 ~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 17 DSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 48 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555555555554443
No 180
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=42.87 E-value=22 Score=27.77 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLT 92 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~ 92 (426)
.|+..|+.|=..|..+.+.|++|+..|+
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444
No 181
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=42.77 E-value=20 Score=26.23 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=13.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 014357 73 DIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
.+.+|+++.++|++++.+|+..|
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666665543
No 182
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=41.57 E-value=55 Score=33.89 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Q 014357 82 AELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGE 114 (426)
Q Consensus 82 ~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~ 114 (426)
++|++|+++|.+++..+|+...++++++..+..
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777776655443
No 183
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=41.54 E-value=82 Score=25.07 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH------------HHHHHHHHHHHHHhhhhhHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQ------------KQVRQLTAKLRLAEQGKDQAQKQ 108 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~------------~~~~~l~~kl~~a~qg~~~a~~~ 108 (426)
.|||.-|..+=+.|+.|..+|+ .++++|+.++..+...+...+-+
T Consensus 22 IdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e 78 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVE 78 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777666666655554 34445555555555444444433
No 184
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=41.35 E-value=1.2e+02 Score=23.26 Aligned_cols=50 Identities=6% Similarity=0.067 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
.+||+.|+.++..-..+..-++.+++-+.+-|+.-=+.-.+-.+.+..|+
T Consensus 20 e~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL~ 69 (72)
T 3cve_A 20 EGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKLL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 45666666666666666666666666666665554444444444444443
No 185
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=41.20 E-value=88 Score=26.10 Aligned_cols=36 Identities=28% Similarity=0.258 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
.||.-..++|+..|.++++||++++.+.+..++...
T Consensus 10 ~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g 45 (125)
T 1joc_A 10 LERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELG 45 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577888889999999999999999988877766543
No 186
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=41.20 E-value=1.1e+02 Score=23.86 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
.|++.+..+=..|+++...|+.++.+=+.+
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~ 42 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAE 42 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555444444433
No 187
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=40.65 E-value=90 Score=22.39 Aligned_cols=36 Identities=6% Similarity=0.052 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
..|+.|..++.+|+.+...|+-+|..-.+....|.+
T Consensus 11 s~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~ 46 (52)
T 1jcd_A 11 SDAQTANAKADQASNDANAARSDAQAAKDDAARANQ 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555444443
No 188
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=40.48 E-value=84 Score=26.26 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
-+-+..|+..+.+|+-|.+.|+.+...|...|+.+|+-..
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~ 74 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE 74 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666666655554433
No 189
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=40.47 E-value=61 Score=25.07 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
.|+.-+..-|.+|.+.-++..+++..|+.+|+..
T Consensus 21 ~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 21 TRLSFQEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555444444444444444444433
No 190
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=40.07 E-value=62 Score=23.12 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQK 107 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~ 107 (426)
+.|...+..++++..+++.+..+++.++..+..-...+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~ 47 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRD 47 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433333333
No 191
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=39.99 E-value=20 Score=35.33 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHhhccccc
Q 014357 81 NAELQKQVRQLTAKL-RLAEQGKDQAQKQVMVLGEQHKV 118 (426)
Q Consensus 81 ~~~l~~~~~~l~~kl-~~a~qg~~~a~~~~~~~~~~~~~ 118 (426)
-.+|.++.++.++++ ++++||..+..+.+..|++||.+
T Consensus 236 ~~~L~e~Ae~~e~~i~el~~~~~~E~~~~V~~LE~~yD~ 274 (325)
T 3e35_A 236 AHSLRTDAHRTQTEIDRQIQEGDEELIALVQGLEHQYDA 274 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh
Confidence 668888888888887 45667789999999999999875
No 192
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=39.86 E-value=31 Score=32.69 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=22.9
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 80 KNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 80 ~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
+..+|++|++.|++|.....+...++++++..|.+++
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEl 91 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEV 91 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666655556666666666666554
No 193
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=39.76 E-value=68 Score=25.37 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=20.3
Q ss_pred HHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 65 ERVNMLK----SDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 65 ~r~~~l~----~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
|.+..|+ .||..-.++..+|+++++..+.++...+++
T Consensus 40 EqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 40 EQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4445555 345555555566666666666665555543
No 194
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.58 E-value=84 Score=26.35 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
+++.|+.++.++...|+.|..++.|+..+
T Consensus 46 ~iq~L~~el~~l~~~~~sLE~~l~e~e~~ 74 (131)
T 3tnu_A 46 TMQNLEIELQSQLSMKASLENSLEETKGR 74 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45556666666666666666655555544
No 195
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=39.54 E-value=25 Score=22.34 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=15.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 76 SLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 76 ~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
.|+|+--.|..-|.+|+++++..|
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666655
No 196
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=39.40 E-value=1.4e+02 Score=25.67 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 014357 82 AELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 82 ~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
..+.+|+++|.++++..|+..+
T Consensus 141 ~~l~~~i~~L~~~l~~le~~~~ 162 (166)
T 3pjs_K 141 EAYTRTTRALHERFDRLERMLD 162 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666655554443
No 197
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.28 E-value=86 Score=26.18 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 63 SPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
---.++.|+.++.++...|+.|..++.|+..+...
T Consensus 41 lrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~ 75 (129)
T 3tnu_B 41 MNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999999999988887766443
No 198
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=38.67 E-value=1e+02 Score=21.88 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
++..++.++..++.+..+++.+++.+++.|..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~ 46 (60)
T 3htk_A 13 QVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIR 46 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555544443
No 199
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=38.63 E-value=77 Score=25.42 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
.+...+.++..+.++..+|+.++.+|..++..
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~ 96 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRR 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555444433
No 200
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=38.36 E-value=49 Score=27.81 Aligned_cols=34 Identities=21% Similarity=0.125 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
.++.++|+.++..++++.++|++..+.|...++.
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~ 111 (135)
T 1q06_A 78 ADVKRRTLEKVAEIERHIEELQSMRDQLLALANA 111 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888888888888888777776543
No 201
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=38.36 E-value=54 Score=25.66 Aligned_cols=29 Identities=14% Similarity=0.290 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
.++.++..|+.+.+.|..++.+|.++|.-
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45667777777777777777777777654
No 202
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=38.08 E-value=20 Score=29.20 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHh
Q 014357 70 LKSDIASLTEKNAELQK-------QVRQLTAKLRLAE 99 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~-------~~~~l~~kl~~a~ 99 (426)
|...+..++++|.-|+. +|++|..+++...
T Consensus 42 LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~ 78 (104)
T 3s9g_A 42 LEKSLSRMEDENNRLRLESKRLDARVRELELELDRLR 78 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 44445555555555554 6666666655543
No 203
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=37.85 E-value=74 Score=34.58 Aligned_cols=83 Identities=13% Similarity=0.118 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccCCcccccccccCCcccC-CCCCchhHHHHHHH
Q 014357 71 KSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPFGTVKALRTNPTVVP-DESVNPRLAKILEE 149 (426)
Q Consensus 71 ~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~~~~~~~~~~t~p~~~p-~~~~~p~L~~lL~~ 149 (426)
+-|...|++|.+||++++.+|++-|.--+.-..-..+++..+.+.|.. | -|| .+.. .+...-..++
T Consensus 401 ~le~~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~kygd-~------RRT--~I~~~~~~~~~~~ed---- 467 (716)
T 1zvu_A 401 KLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD-D------RRS--PLQEREEAKAMSEHD---- 467 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC-C------CCS--CBCCCCCCCCCCSST----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC-C------ccc--cccccccchhcchhh----
Confidence 457788999999999999999988877777777777888888888753 2 222 2221 1110101111
Q ss_pred hcCCCeEEEEEcCcchH
Q 014357 150 VAVGKELIVALANSNVK 166 (426)
Q Consensus 150 ~A~d~~VIvt~~N~~~~ 166 (426)
...+..|+|+.+..+|.
T Consensus 468 li~~e~v~v~ls~~Gyi 484 (716)
T 1zvu_A 468 MLPSEPVTIVLSQMGWV 484 (716)
T ss_dssp TSCCCCCCEEEETTTEE
T ss_pred ccCCceEEEEEecCCeE
Confidence 12367788888899993
No 204
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=37.62 E-value=56 Score=32.05 Aligned_cols=39 Identities=21% Similarity=0.044 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
+++..|+..|...+++...|++++.++++|++..++...
T Consensus 12 ~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~ 50 (323)
T 1lwu_C 12 EEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLV 50 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666666666655554443
No 205
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=37.47 E-value=38 Score=29.02 Aligned_cols=38 Identities=8% Similarity=0.130 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccC
Q 014357 82 AELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVG 119 (426)
Q Consensus 82 ~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~ 119 (426)
+-|+++..+|.++++..++-...-...+..+.+..+.|
T Consensus 98 ~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~ 135 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISSA 135 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444444444444444444444444444444443333
No 206
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=37.42 E-value=79 Score=28.20 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHhhcccc-cCCcccccccccCCcccCC
Q 014357 69 MLKSDIASLTEKNAELQKQVR-QLTAKLRLAEQGKDQAQKQVMVLGEQHK-VGPFGTVKALRTNPTVVPD 136 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~-~l~~kl~~a~qg~~~a~~~~~~~~~~~~-~~~~~~~~~~~t~p~~~p~ 136 (426)
.|..+|++ ++.|.+|.+ .-++||+.+|+-..+-++++..++=.++ .|-..-+..-.+.|.+..-
T Consensus 9 e~~e~L~~----~e~l~~el~~tWeeKl~~te~~~~e~~~~l~~~gi~~~~~~~~~gv~~~~~~PhLvnL 74 (184)
T 4egx_A 9 EAIERLKE----TEKIIAELNETWEEKLRRTEAIRMEREALLAEMGVAMREDGGTLGVFSPKKTPHLVNL 74 (184)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEETTTEEEEEECCSSSCEEEEC
T ss_pred HHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcCcchhhcccccceecCCCCceEEec
Confidence 34444444 444444443 3589999999888888888888764433 2222223334455766654
No 207
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=37.30 E-value=90 Score=26.12 Aligned_cols=51 Identities=18% Similarity=0.157 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGE 114 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~ 114 (426)
.+|...|...-..|+.+..+|..++.+..+........+...+.++..|.+
T Consensus 68 EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 68 EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555445555555555555544444444444444445444444443
No 208
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=37.22 E-value=92 Score=27.68 Aligned_cols=48 Identities=15% Similarity=0.134 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVL 112 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~ 112 (426)
.=|..|...++.++++-++.+++|..-...|..|.+.-.+|.++...+
T Consensus 78 ~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKf 125 (169)
T 3k29_A 78 AYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKT 125 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778899999999999999999999999999999999999886655
No 209
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=37.22 E-value=72 Score=32.18 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 82 AELQKQVRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 82 ~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
++|++|+++|.+++..+|+...+.++++..+.
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777766666666655443
No 210
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=37.05 E-value=1.2e+02 Score=23.67 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVL 112 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~ 112 (426)
+.|....++|.++..+|..|+.|..++......-+.+-..++..+
T Consensus 38 kele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 38 KELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555554444555444444444444444443
No 211
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=36.95 E-value=2.4e+02 Score=25.63 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCcceEEec
Q 014357 229 KFRVLREFLQLDYSVLLSD 247 (426)
Q Consensus 229 K~~~l~~vL~lGy~VL~sD 247 (426)
...-++.++++|.+-++||
T Consensus 214 ~~~~~~~l~~~GVDgIiTD 232 (250)
T 3ks6_A 214 TPSQITKALDLGVKVFTTD 232 (250)
T ss_dssp SHHHHHHHHHHTCSEEEES
T ss_pred CHHHHHHHHHcCCCEEEcC
Confidence 3445667777787777777
No 212
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=36.90 E-value=14 Score=23.20 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=11.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 75 ASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 75 ~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
+.|++|.+.|...-.--++|+.-.||
T Consensus 3 aaleqkiaaleqkcaaceqkiaaleq 28 (32)
T 4g1a_A 3 AALEQKIAALEQKCAACEQKIAALEQ 28 (32)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544444444444444443
No 213
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=36.69 E-value=41 Score=30.98 Aligned_cols=81 Identities=16% Similarity=0.288 Sum_probs=51.3
Q ss_pred CcccccccccCCcccCCC-CCchhHHHHHHHhcC--CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcE-EEEEeCHHHHH
Q 014357 120 PFGTVKALRTNPTVVPDE-SVNPRLAKILEEVAV--GKELIVALANSNVKSMLEVWSTNIKRVGITNY-LVVALDDQTAE 195 (426)
Q Consensus 120 ~~~~~~~~~t~p~~~p~~-~~~p~L~~lL~~~A~--d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~-lVvAlD~~a~~ 195 (426)
++|.+.++.|||++.-.+ ..+ +.+.++++.. ++.|-+-+....+..|+..=.+ +.+++ +|+ +=+..-.+-.+
T Consensus 18 ~~g~i~GVTTNPsli~k~~g~~--~~~~~~eI~~~v~G~Vs~EV~a~d~e~mi~ea~~-l~~~~-~nv~IKIP~T~eGl~ 93 (212)
T 3r8r_A 18 ELGILAGVTTNPSLVAKEANVS--FHDRLREITDVVKGSVSAEVISLKAEEMIEEGKE-LAKIA-PNITVKIPMTSDGLK 93 (212)
T ss_dssp HTTCEEEEECCHHHHHTSCSSC--HHHHHHHHHHHCCSCEEEECCCSSHHHHHHHHHH-HHTTC-TTEEEEEESSHHHHH
T ss_pred hcCCcccccCCHHHHHHccCCC--HHHHHHHHHHhcCCCEEEEEecCCHHHHHHHHHH-HHHhC-CCEEEEeCCCHHHHH
Confidence 356678999999999988 433 4444444432 7777777766667677664433 44454 554 44666665554
Q ss_pred H---HHHCCCCE
Q 014357 196 Y---CKTNDIPV 204 (426)
Q Consensus 196 ~---c~~~g~~c 204 (426)
. |.+.|++|
T Consensus 94 A~~~L~~~GI~v 105 (212)
T 3r8r_A 94 AVRALTDLGIKT 105 (212)
T ss_dssp HHHHHHHTTCCE
T ss_pred HHHHHHHCCCcE
Confidence 4 45568885
No 214
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=36.66 E-value=58 Score=21.59 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=17.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 74 IASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 74 ~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
+.||+.|-+||..+..+|..++...
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RL 27 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4677777777777777777765443
No 215
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=36.53 E-value=1.3e+02 Score=28.30 Aligned_cols=95 Identities=8% Similarity=0.096 Sum_probs=56.0
Q ss_pred HHHHHHHhcCCCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEe--CHHHHHHHHHCCCCEEEeCCCCC---ccccc
Q 014357 143 LAKILEEVAVGKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVAL--DDQTAEYCKTNDIPVYQRDPDEG---IDSIA 217 (426)
Q Consensus 143 L~~lL~~~A~d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAl--D~~a~~~c~~~g~~c~~~~~~~g---~d~~~ 217 (426)
+..-+++.+.+-.+++..++.....-....++.+...+++-++++.. ++...+.+.+.++|++.++.... .+..
T Consensus 91 ~~~gi~~~a~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~V- 169 (366)
T 3h5t_A 91 FLAGVAQAAGDTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSVAKGDPHIDAIRARGLPAVIADQPAREEGMPFI- 169 (366)
T ss_dssp HHHHHHHHSSSCEEEEEECCCCTTCCHHHHHHHHHTCCCSCEEEESCCTTCHHHHHHHHHTCCEEEESSCCSCTTCCEE-
T ss_pred HHHHHHHHHhhCCEEEEEcCCCccHHHHHHHHHHHhCCCCEEEEecCCCChHHHHHHHHCCCCEEEECCccCCCCCCEE-
Confidence 33444555556677777766443211334566666678888888765 34667788889999998865321 1111
Q ss_pred ccCcchhhHhhHHHHHHHHHhcCcc
Q 014357 218 RKGGNHAVSGLKFRVLREFLQLDYS 242 (426)
Q Consensus 218 gs~~f~~m~~~K~~~l~~vL~lGy~ 242 (426)
+.. +...+. ..+..|+++|+.
T Consensus 170 ~~D-~~~~~~---~a~~~L~~~G~r 190 (366)
T 3h5t_A 170 APN-NRKAIA---PAAQALIDAGHR 190 (366)
T ss_dssp EEC-HHHHTH---HHHHHHHHTTCC
T ss_pred EeC-hHHHHH---HHHHHHHHCCCC
Confidence 111 222222 366778889995
No 216
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=36.47 E-value=29 Score=34.92 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=14.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 014357 77 LTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVM 110 (426)
Q Consensus 77 ~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~ 110 (426)
|++|.+.-.|.|.||+..+...++.-.+++-|+.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444443
No 217
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=36.24 E-value=75 Score=24.28 Aligned_cols=33 Identities=15% Similarity=0.350 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
|+.|..+|.+++.|-..++..+.+|+.|++-.|
T Consensus 10 Vk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 10 IKAIETDIASVRQEVNTAKGNISSLQGDVQALQ 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccchhhhheeeccccchhhhhhhhhHHHH
Confidence 667777788888777777777776666655444
No 218
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=35.80 E-value=62 Score=36.81 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 71 KSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 71 ~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
++|..+++.+..+|.+++.+|+++++.+.+.++..+
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~le 1011 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIE 1011 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333
No 219
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=35.60 E-value=48 Score=42.15 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGE 114 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~ 114 (426)
++++.++.++...+++.++.++++++|++||+..+..-+++.++-..|..
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~ 2063 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKT 2063 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777777777777777666555555444333333
No 220
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=35.54 E-value=8.6 Score=36.41 Aligned_cols=28 Identities=11% Similarity=0.199 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
..++.++.++.++|.+++.++.+|+.++
T Consensus 151 e~~~~~i~ql~~En~~le~~Ie~Lk~e~ 178 (250)
T 2ve7_C 151 KSSADKMQQLNAAHQEALMKLERLEKEV 178 (250)
T ss_dssp THHHHHHHHHHHHHHHHHHSCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 221
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=35.46 E-value=69 Score=26.90 Aligned_cols=44 Identities=9% Similarity=0.014 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQK 107 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~ 107 (426)
-+-+..|+..+.+|+-+.+.|+.+...|...|+.+|+-...+.+
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~ 80 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLA 80 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 35578889999999999999999999999999999876655443
No 222
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=35.40 E-value=61 Score=27.50 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHH
Q 014357 85 QKQVRQLTAKLRLAEQGKDQAQKQ 108 (426)
Q Consensus 85 ~~~~~~l~~kl~~a~qg~~~a~~~ 108 (426)
.+.+++|.++++.+++...++-+.
T Consensus 91 ~~ri~~L~~E~~~~~~el~~~v~e 114 (132)
T 1ykh_B 91 LRKIDMLQKKLVEVEDEKIEAIKK 114 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444433
No 223
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=35.27 E-value=51 Score=25.99 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=20.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 78 TEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 78 ~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
=+||..|.++|..|.+.+...++......
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888777666555444
No 224
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=35.05 E-value=1.1e+02 Score=25.53 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014357 82 AELQKQVRQLTAKLRLAEQGKDQAQKQ 108 (426)
Q Consensus 82 ~~l~~~~~~l~~kl~~a~qg~~~a~~~ 108 (426)
..|+.+|++|...|....+-+.+|.-.
T Consensus 43 ~ql~~~i~~Le~eL~e~r~~~q~a~~e 69 (120)
T 3i00_A 43 LQLKGHVSELEADLAEQQHLRQQAADD 69 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888877777665555533
No 225
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=35.01 E-value=39 Score=25.16 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=25.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
+|+.++=.|+-||+.+|-.+++.|+....+
T Consensus 3 ~Elr~iLqERNELKa~vf~lqeEL~yY~~e 32 (65)
T 1yhn_B 3 EEFEQILQERNELKAKVFLLKEELAYFQRE 32 (65)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467788888889999999999999877644
No 226
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=34.95 E-value=1.3e+02 Score=23.01 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTA 93 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~ 93 (426)
.|..+.+|+.+++++..++..|+.
T Consensus 7 iKkkmqaLk~Ekdna~e~~e~lE~ 30 (75)
T 3mtu_A 7 IKKKMQMLKLDKENALDRAEQAEA 30 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555554
No 227
>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I 2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I 3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Probab=34.89 E-value=50 Score=28.69 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=36.5
Q ss_pred HHHHHhhcCCCcccCCcchhhhhhhhcccccCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 27 GCVFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 27 g~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
|.-==||+|.|+=.-+. ++-++.++.+.++++++.++.+++..++.++|
T Consensus 24 GYaRNfLiP~g~A~~AT--------------------~~n~k~~e~~~~~~~~~~~~~~~~A~~~~~~L 72 (148)
T 3v2d_I 24 GYARNYLLPRGLAVLAT--------------------ESNLKALEARIRAQAKRLAERKAEAERLKEIL 72 (148)
T ss_dssp HHHHHTTGGGTSEEECC--------------------HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHS
T ss_pred CceehhhcccCchhhcC--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445777777754433 77888888888888888888888888887776
No 228
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=34.70 E-value=34 Score=23.68 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHh
Q 014357 70 LKSDIASLTEKN 81 (426)
Q Consensus 70 l~~~~~~~~~~~ 81 (426)
|..++.+|+.|.
T Consensus 21 LE~Ri~~LE~KL 32 (43)
T 2pnv_A 21 FEKRIVTLETKL 32 (43)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 229
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=34.68 E-value=1.4e+02 Score=27.34 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEe--C-HHHHHHHH
Q 014357 167 SMLEVWSTNIKRVGITNYLVVAL--D-DQTAEYCK 198 (426)
Q Consensus 167 d~~~Nwl~slkr~Gi~n~lVvAl--D-~~a~~~c~ 198 (426)
.++.--++++.+.|+++++|++- + ++..+.+.
T Consensus 56 pli~~~l~~l~~~g~~~iivv~~~~~~~~~~~~~~ 90 (269)
T 4ecm_A 56 PMIYHAVYKLKQCDITDIMIITGKEHMGDVVSFLG 90 (269)
T ss_dssp EHHHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHT
T ss_pred EHHHHHHHHHHHCCCCEEEEECChhhHHHHHHHHh
Confidence 46666677777789988887776 2 44545554
No 230
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=34.64 E-value=52 Score=27.29 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
..|..++....+++..|+.++..|+++|..
T Consensus 85 ~~l~~~~~~e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 85 EEWKKKYEKEKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777778888888888888877654
No 231
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=34.60 E-value=67 Score=30.10 Aligned_cols=40 Identities=23% Similarity=0.378 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
|....-|+..+++||.+|+.|+++|.+.-+..++....-.
T Consensus 67 VSL~erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~ 106 (252)
T 3e98_A 67 VSLVERQVRLLRERNIEMRHRLSQLMDVARENDRLFDKTR 106 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466678899999999999999999988777776665544
No 232
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=34.58 E-value=68 Score=20.85 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=16.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 74 IASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 74 ~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
..||+.|-+||-.+..+|+..+..
T Consensus 2 MnQLEdKVEell~~~~~le~EV~R 25 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIAR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHH
Confidence 457777777777777777766443
No 233
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=34.21 E-value=1.2e+02 Score=25.27 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVM 110 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~ 110 (426)
.+.+..+..++..++++.+.-.+..++|.++.....+.++.-+.|+.
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~ 58 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666665555543
No 234
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=33.90 E-value=65 Score=28.08 Aligned_cols=42 Identities=21% Similarity=0.135 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccCCccc
Q 014357 82 AELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPFGT 123 (426)
Q Consensus 82 ~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~~~~~ 123 (426)
++|.+|.++..++++.+-+.++.-.+++..+-..++.|-+++
T Consensus 95 ~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~~~l~~ 136 (151)
T 1yke_B 95 DMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDGIANS 136 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444444444555556666666666666533
No 235
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=33.83 E-value=2e+02 Score=23.79 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhh
Q 014357 81 NAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 81 ~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
...+.+|+++|.++++..|+..+
T Consensus 113 ~~~l~~~~~~l~~~l~~le~~~~ 135 (139)
T 3eff_K 113 EEAYTRTTRALHERFDRLERMLD 135 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888887777766544
No 236
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=33.75 E-value=1.5e+02 Score=22.62 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
||...++.|.++..+=..|++.|++.+.+..|-.+
T Consensus 15 ~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~E 49 (75)
T 3a7o_A 15 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTE 49 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 34446666666666666666777776666554433
No 237
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=33.66 E-value=79 Score=30.55 Aligned_cols=26 Identities=12% Similarity=-0.012 Sum_probs=16.8
Q ss_pred cEEEEEeCH---HHHHHHHHCCCCEEEeC
Q 014357 183 NYLVVALDD---QTAEYCKTNDIPVYQRD 208 (426)
Q Consensus 183 n~lVvAlD~---~a~~~c~~~g~~c~~~~ 208 (426)
.++|++... +..+.|.+.|...+.++
T Consensus 188 ~~vv~~~~~~~~~v~~il~s~~f~~~~~p 216 (357)
T 3rrk_A 188 AALVVVKRSELEAARSSLSRLGLAELRFP 216 (357)
T ss_dssp EEEEEEEGGGHHHHHHHHHTTTCCBCCCC
T ss_pred EEEEEEEHHHHHHHHHHHHHCCCeeccCC
Confidence 345666432 56667888888777654
No 238
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=33.62 E-value=83 Score=25.16 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=17.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 73 DIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
+...|+.++.+|+.|+..|.+.+....+..+.-.
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555544444333
No 239
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=33.42 E-value=30 Score=23.37 Aligned_cols=7 Identities=29% Similarity=0.373 Sum_probs=2.5
Q ss_pred HHHhHHH
Q 014357 78 TEKNAEL 84 (426)
Q Consensus 78 ~~~~~~l 84 (426)
+++|..|
T Consensus 26 E~~N~~L 32 (39)
T 1gk7_A 26 EQQNKIL 32 (39)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 240
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=33.41 E-value=1.4e+02 Score=23.35 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=12.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhhHH
Q 014357 77 LTEKNAELQKQVRQLTAKLRLAEQGKDQA 105 (426)
Q Consensus 77 ~~~~~~~l~~~~~~l~~kl~~a~qg~~~a 105 (426)
|-...++|+.+|.+|+-.+....-.-++.
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444444444444444444443333333
No 241
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=33.20 E-value=73 Score=25.76 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=26.3
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccC
Q 014357 80 KNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVG 119 (426)
Q Consensus 80 ~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~ 119 (426)
+..-|++++.+|+..++.+.++++-.+|-..+|.+.-..|
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~G 55 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMG 55 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence 3445566666666667777777777777777776655544
No 242
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=32.99 E-value=91 Score=26.84 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
.|+++...|+.+|++|+++.++++...+.+
T Consensus 54 eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 54 ELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555666665555555554443
No 243
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=32.92 E-value=1.3e+02 Score=26.24 Aligned_cols=25 Identities=12% Similarity=0.308 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVR 89 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~ 89 (426)
..+..|++++++++.+...|..+++
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~ 92 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIA 92 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777776666664433
No 244
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=32.52 E-value=30 Score=26.62 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=9.0
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 014357 75 ASLTEKNAELQKQVRQLT 92 (426)
Q Consensus 75 ~~~~~~~~~l~~~~~~l~ 92 (426)
..|.+++.+|+.++.+|+
T Consensus 60 ~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 60 QYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555554444
No 245
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=32.47 E-value=47 Score=38.05 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
.+++..|+.++..++++.+.+++++.+|++++..+++.+.+++
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555444444444443
No 246
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=32.26 E-value=94 Score=29.14 Aligned_cols=30 Identities=13% Similarity=0.148 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
+=...++.+|.+..+.++++.|-+||++..
T Consensus 22 ~iF~~~~~~Ld~~~d~REriik~sRdIt~~ 51 (249)
T 3axj_A 22 DIFSNYQKYIDNEQEVRENIRIVVREIEHL 51 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888889999999999999876
No 247
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=32.20 E-value=58 Score=22.16 Aligned_cols=34 Identities=9% Similarity=0.100 Sum_probs=26.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 73 DIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
.+.++.+|...|+.|-....++-.++||...++-
T Consensus 4 ~MdAIKKKMq~lK~ekd~A~drAe~~E~~~k~~~ 37 (40)
T 2z5i_I 4 SMDAIKKKMQMLKLDKENALDRAEQLENEVARLK 37 (40)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 3567888888899888888888888888777665
No 248
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=32.13 E-value=76 Score=29.28 Aligned_cols=35 Identities=11% Similarity=0.177 Sum_probs=19.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
.++..++++.++|++|+.+|++++..+...-++-.
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~R 93 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFR 93 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666555444434333
No 249
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=32.00 E-value=13 Score=24.74 Aligned_cols=21 Identities=38% Similarity=0.711 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhhcCCCcc
Q 014357 19 AIVIGVLVGCVFAFLFPHGFF 39 (426)
Q Consensus 19 ~~~vgv~lg~~~a~~~~~~~~ 39 (426)
..-.|++|=|++|++|++-||
T Consensus 16 SLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 16 SLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhcc
Confidence 456799999999999977666
No 250
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.79 E-value=96 Score=24.82 Aligned_cols=40 Identities=10% Similarity=0.221 Sum_probs=18.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 74 IASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 74 ~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
+..++++..++++++.+|.+.....++...+..+.+..+.
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444444444444444444444443
No 251
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=31.71 E-value=88 Score=27.84 Aligned_cols=41 Identities=15% Similarity=0.321 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
|+..|..|+..+...-.....+.+.|++|+...|+.+..-+
T Consensus 98 ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 98 RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45555555555555555555566666666666666555443
No 252
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=31.48 E-value=44 Score=29.09 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHh
Q 014357 62 ESPERVNMLKSDIASLTE-KNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 62 ~~~~r~~~l~~~~~~~~~-~~~~l~~~~~~l~~kl~~a~ 99 (426)
.+++-.+.|+.||..|.. ++.+..+.+.+.++.=+++|
T Consensus 6 ~T~~g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsE 44 (158)
T 1grj_A 6 MTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKE 44 (158)
T ss_dssp EEHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGG
T ss_pred cCHHHHHHHHHHHHHHHhccchhhHhhHHHHHhcccccc
Confidence 356778889999998877 66666666665554433333
No 253
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=31.33 E-value=1.2e+02 Score=28.29 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
.+-...++.+|.+..+.++++.|-+||++..
T Consensus 16 ~~~f~~~~~~Ld~~~d~REriik~sRdI~~~ 46 (240)
T 1j1j_A 16 SEIFVELQGFLAAEQDIREEIRKVVQSLEQT 46 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788899999999999999999998876
No 254
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=31.08 E-value=1.4e+02 Score=23.81 Aligned_cols=29 Identities=10% Similarity=0.278 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
=+..|..+|..|+++-++|..++.+|...
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke 33 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKN 33 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666666666665544
No 255
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=31.02 E-value=1.5e+02 Score=23.07 Aligned_cols=47 Identities=30% Similarity=0.272 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH-------------HHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 67 VNMLKSDIASLTEKNAELQKQVR-------------QLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~-------------~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
+..|..+|..|+.+.++|..++. +|..++..+++.-+++...-+.|.
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777664 455555555555555554444443
No 256
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=30.77 E-value=92 Score=23.81 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHhh
Q 014357 66 RVNMLKSDIASLTEKNAELQK-------QVRQLTAKLRLAEQ 100 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~-------~~~~l~~kl~~a~q 100 (426)
+.++|+.+...+.++-..|.+ ++|++..-.+.+|.
T Consensus 10 kmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~ 51 (75)
T 3mtu_A 10 KMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEG 51 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777777 66666666665554
No 257
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=30.76 E-value=1.9e+02 Score=25.30 Aligned_cols=97 Identities=11% Similarity=0.168 Sum_probs=50.5
Q ss_pred eEEEEEcCcchHHHHHHHHHHHHHcCCCcE-EEEE---eCHHHHHHHHHC--CCCEEEeCCC-CCcccccccCcchhhHh
Q 014357 155 ELIVALANSNVKSMLEVWSTNIKRVGITNY-LVVA---LDDQTAEYCKTN--DIPVYQRDPD-EGIDSIARKGGNHAVSG 227 (426)
Q Consensus 155 ~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~-lVvA---lD~~a~~~c~~~--g~~c~~~~~~-~g~d~~~gs~~f~~m~~ 227 (426)
+||+.+-|.. +.+...++|+.+....++ +|+. .++.+.+.+++. ..++-.+... .+... .....-.+.
T Consensus 4 SViIp~yn~~--~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~i~~~~~~~~~---~~~n~G~~~ 78 (255)
T 1qg8_A 4 SVIMTSYNKS--DYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKE---RTEKTRYAA 78 (255)
T ss_dssp EEEEEESSCT--TTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHH---HHSSCHHHH
T ss_pred EEEEEcCCCH--HHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcCCEEEEecccccccc---cccccCHHH
Confidence 3667777765 678889999976555555 3333 335677777665 2222221111 00000 000111222
Q ss_pred hHHHHHHHHHhcCcceEEecccEEeecCccc
Q 014357 228 LKFRVLREFLQLDYSVLLSDIDIVFLQNPFE 258 (426)
Q Consensus 228 ~K~~~l~~vL~lGy~VL~sDvDVVWlrnP~~ 258 (426)
.+...+.. ..|==|++.|.|.+|..|=+.
T Consensus 79 a~N~gi~~--a~g~~i~~lD~Dd~~~~~~l~ 107 (255)
T 1qg8_A 79 LINQAIEM--AEGEYITYATDDNIYMPDRLL 107 (255)
T ss_dssp HHHHHHHH--CCCSEEEEEETTEEECTTHHH
T ss_pred HHHHHHHH--cCCCEEEEeCCCCccChHHHH
Confidence 33333332 256679999999999554343
No 258
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=30.16 E-value=45 Score=22.14 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=15.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 74 IASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 74 ~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
+.||+.|-+||-.+..+|...+...
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL 27 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARL 27 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3566666666666666666665443
No 259
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=29.79 E-value=62 Score=26.83 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHH---HhHHHHHHHHH
Q 014357 68 NMLKSDIASLTE---KNAELQKQVRQ 90 (426)
Q Consensus 68 ~~l~~~~~~~~~---~~~~l~~~~~~ 90 (426)
..|+.++.+..+ +..-|+.|+.=
T Consensus 48 delk~ei~q~~~~lE~I~vLkaQv~I 73 (110)
T 2v4h_A 48 DKLKEEAEQHKIVMETVPVLKAQADI 73 (110)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555444 44445555543
No 260
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=29.69 E-value=17 Score=30.19 Aligned_cols=11 Identities=9% Similarity=-0.028 Sum_probs=4.6
Q ss_pred HHHHHHHHhhc
Q 014357 24 VLVGCVFAFLF 34 (426)
Q Consensus 24 v~lg~~~a~~~ 34 (426)
+++++++++.+
T Consensus 65 ~~~~~~~~~~~ 75 (163)
T 2f95_B 65 IILLGINLGLV 75 (163)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444444
No 261
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.37 E-value=48 Score=28.49 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=20.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 74 IASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 74 ~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
++.++.+...|..++.+-+.+-..||+.+...++.+..|+
T Consensus 41 l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 41 LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp TTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555444444455556666666555554443
No 262
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=29.21 E-value=90 Score=24.62 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
.+=...|+.....++++.+.|.++...++.++...++
T Consensus 64 ~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 64 DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445788888888888888888888888888776653
No 263
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=29.10 E-value=1.5e+02 Score=24.27 Aligned_cols=30 Identities=10% Similarity=0.304 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
...+|...++.+.++.++..+|..++..++
T Consensus 13 ~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 13 VTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777766655
No 264
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=28.96 E-value=73 Score=36.45 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
+++..|+.++..++++..+|++++.+|++++
T Consensus 864 ~eL~el~~~L~~le~~l~ele~~l~~Le~e~ 894 (1184)
T 1i84_S 864 EELQRTKERQQKAEAELKELEQKHTQLCEEK 894 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555554444444444444444333
No 265
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=28.95 E-value=86 Score=28.73 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=8.0
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 014357 80 KNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 80 ~~~~l~~~~~~l~~kl~~a 98 (426)
||..|.++|..|.+.++..
T Consensus 116 EN~~Lh~~ie~l~eEi~~L 134 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARL 134 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333
No 266
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=28.89 E-value=2.4e+02 Score=24.79 Aligned_cols=94 Identities=15% Similarity=0.117 Sum_probs=54.1
Q ss_pred HHHHHhcC--CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEeC---HHHHHHHHHCCCCEEEeCCCCC-cccccc
Q 014357 145 KILEEVAV--GKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALD---DQTAEYCKTNDIPVYQRDPDEG-IDSIAR 218 (426)
Q Consensus 145 ~lL~~~A~--d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAlD---~~a~~~c~~~g~~c~~~~~~~g-~d~~~g 218 (426)
+-+++.|. +-.+++..++... +-....++.+...+++-+++...+ ....+.+.+.|+|++.++.... .+..+=
T Consensus 22 ~gi~~~a~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V 100 (272)
T 3o74_A 22 KQLEQGARARGYQLLIASSDDQP-DSERQLQQLFRARRCDALFVASCLPPEDDSYRELQDKGLPVIAIDRRLDPAHFCSV 100 (272)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCH-HHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHTTCCEEEESSCCCTTTCEEE
T ss_pred HHHHHHHHHCCCEEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHHHcCCCEEEEccCCCccccCEE
Confidence 33444443 4566666655433 233445666666688888888766 5677888999999998765421 111110
Q ss_pred cCcchhhHhhHHHHHHHHHhcCcc
Q 014357 219 KGGNHAVSGLKFRVLREFLQLDYS 242 (426)
Q Consensus 219 s~~f~~m~~~K~~~l~~vL~lGy~ 242 (426)
..++...+. .....++++|+.
T Consensus 101 ~~d~~~~~~---~a~~~L~~~G~~ 121 (272)
T 3o74_A 101 ISDDRDASR---QLAASLLSSAPR 121 (272)
T ss_dssp EECHHHHHH---HHHHHHHTTCCS
T ss_pred EEchHHHHH---HHHHHHHHCCCc
Confidence 112222222 255677888984
No 267
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=28.74 E-value=1.2e+02 Score=24.27 Aligned_cols=37 Identities=27% Similarity=0.353 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
+=+..|+..+..++++...|.+++..+..++...++.
T Consensus 70 ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457778888888888888888888887777665543
No 268
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.64 E-value=46 Score=33.88 Aligned_cols=30 Identities=13% Similarity=0.411 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
+.|++|+..++.++..|++++++++++++.
T Consensus 42 ~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~ 71 (434)
T 4b4t_M 42 RIFRSELQRLSHENNVMLEKIKDNKEKIKN 71 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555555555555544
No 269
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=28.58 E-value=22 Score=24.87 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
|+-||...+|.++.+..||+-|+.|++
T Consensus 4 lQrELeEa~Erae~ae~~vnkLR~k~R 30 (45)
T 3zwh_Q 4 LQRELEDATETADAMNREVSSLKNKLR 30 (45)
T ss_dssp SSSHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455777778888888888888888764
No 270
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=28.12 E-value=3.2e+02 Score=24.25 Aligned_cols=96 Identities=13% Similarity=0.061 Sum_probs=55.6
Q ss_pred hHHHHHHHhcC--CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEeC-------HHHHHHHHHCCCCEEEeCCCCC
Q 014357 142 RLAKILEEVAV--GKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALD-------DQTAEYCKTNDIPVYQRDPDEG 212 (426)
Q Consensus 142 ~L~~lL~~~A~--d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAlD-------~~a~~~c~~~g~~c~~~~~~~g 212 (426)
++.+-+++.|. +-.+++..++... +-....++.+...+++-+++...| .+..+.+.+.|+|++.++....
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~ 110 (298)
T 3tb6_A 32 SIIRGIESYLSEQGYSMLLTSTNNNP-DNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINASYA 110 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCH-HHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSCCT
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCh-HHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecCcC
Confidence 34444444554 4566666555433 233445666666789998888764 3677888899999998875421
Q ss_pred -ccccc-ccCcchhhHhhHHHHHHHHHhcCcc
Q 014357 213 -IDSIA-RKGGNHAVSGLKFRVLREFLQLDYS 242 (426)
Q Consensus 213 -~d~~~-gs~~f~~m~~~K~~~l~~vL~lGy~ 242 (426)
....+ +. ++...+. ..+..++++|+.
T Consensus 111 ~~~~~~V~~-d~~~~~~---~a~~~L~~~G~~ 138 (298)
T 3tb6_A 111 ELAAPSFTL-DDVKGGM---MAAEHLLSLGHT 138 (298)
T ss_dssp TCSSCEEEE-CHHHHHH---HHHHHHHHTTCC
T ss_pred CCCCCEEEe-CcHHHHH---HHHHHHHHCCCC
Confidence 11111 11 2222222 255667788985
No 271
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=28.04 E-value=95 Score=19.93 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQ 90 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~ 90 (426)
|++...|.|-+.+++|....++++.-
T Consensus 2 ekiaaikeeqaaieeeiqaikeeiaa 27 (36)
T 1bb1_B 2 EKIAAIKEEQAAIEEEIQAIKEEIAA 27 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777776666666543
No 272
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=28.02 E-value=1e+02 Score=19.81 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQL 91 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l 91 (426)
|+|..||.|+--|-=|-..|++.|..|
T Consensus 8 ekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 8 EKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666666655555555555555544
No 273
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=27.87 E-value=4.1e+02 Score=26.87 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeCH---H----HHHHHHHCCCCEEEe
Q 014357 167 SMLEVWSTNIKRVGITNYLVVALDD---Q----TAEYCKTNDIPVYQR 207 (426)
Q Consensus 167 d~~~Nwl~slkr~Gi~n~lVvAlD~---~----a~~~c~~~g~~c~~~ 207 (426)
..+.+....+++.|. .+++++.|. . ...+.+..|+|++..
T Consensus 115 Tt~~kLA~~l~~~G~-kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~ 161 (443)
T 3dm5_A 115 TTVAKLARYFQKRGY-KVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGN 161 (443)
T ss_dssp HHHHHHHHHHHTTTC-CEEEEECCCSSTHHHHHHHHHHGGGTCEEECC
T ss_pred HHHHHHHHHHHHCCC-eEEEEeCCCcchhHHHHHHHHHHhcCCcEEec
Confidence 455555555655564 567777773 1 223445668887753
No 274
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=27.81 E-value=32 Score=25.07 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQ 90 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~ 90 (426)
...+..|..++..|++..++|+.++.|
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445788888888888888888876643
No 275
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=27.59 E-value=25 Score=33.14 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
....|.+|-++|++||++|+.+..++.+-
T Consensus 20 ~~~~l~~eN~~Lk~e~~~l~~~~~~~~~l 48 (255)
T 2j5u_A 20 DLKNTYTENQHLKERLEELAQLESEVADL 48 (255)
T ss_dssp ------CTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777887777776655554
No 276
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=27.09 E-value=1.4e+02 Score=27.14 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeCHHHHHHHHHCCCCEEEe
Q 014357 167 SMLEVWSTNIKRVGITNYLVVALDDQTAEYCKTNDIPVYQR 207 (426)
Q Consensus 167 d~~~Nwl~slkr~Gi~n~lVvAlD~~a~~~c~~~g~~c~~~ 207 (426)
+|+.--++.+++.|++.++|++-++...+.|.+.|+.+...
T Consensus 28 Pli~~~l~~l~~~~~~~ivVv~~~~~i~~~~~~~g~~v~~~ 68 (252)
T 3oam_A 28 PMIQWVYEQAMQAGADRVIIATDDERVEQAVQAFGGVVCMT 68 (252)
T ss_dssp EHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEEC
T ss_pred EHHHHHHHHHHhCCCCeEEEECCHHHHHHHHHHcCCEEEEc
Confidence 36677777888889999888887788888888888876553
No 277
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=27.03 E-value=45 Score=32.65 Aligned_cols=20 Identities=10% Similarity=-0.248 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHh--cCcceEEe
Q 014357 227 GLKFRVLREFLQ--LDYSVLLS 246 (426)
Q Consensus 227 ~~K~~~l~~vL~--lGy~VL~s 246 (426)
|+=..-|+.|.. .+-..|..
T Consensus 140 WLGle~ih~LT~~~~~~~eL~I 161 (319)
T 1fzc_C 140 WLGNEKIHLISTQSAIPYALRV 161 (319)
T ss_dssp ECCHHHHHHHHTSTTCCEEEEE
T ss_pred EeccccEEEeeccCCCCEEEEE
Confidence 344555666665 55444443
No 278
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=26.90 E-value=47 Score=27.63 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=12.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHh
Q 014357 77 LTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 77 ~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
|+++..+|++|++.|+.+|...+
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~ 24 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTN 24 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555556666665554443
No 279
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=26.87 E-value=75 Score=32.97 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Q 014357 81 NAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGE 114 (426)
Q Consensus 81 ~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~ 114 (426)
.++|++|+++|.+++..+|+...+.++++..+.-
T Consensus 118 ~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~ 151 (501)
T 1wle_A 118 YQSLRARGREIRKQLTLLYPKEAQLEEQFYLRAL 151 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888888888888888877765543
No 280
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=26.77 E-value=71 Score=26.82 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHhHH
Q 014357 67 VNMLKSDIASLTEKNAE 83 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~ 83 (426)
|..|+.++.+|+-+.++
T Consensus 42 v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 42 VLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 281
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=26.63 E-value=65 Score=32.13 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
+..-++.++++.++|.+++.++++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (426)
T 1lrz_A 245 FDEYIKELNEERDILNKDLNKALKDIE 271 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345577888999999999999987773
No 282
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=26.50 E-value=79 Score=31.90 Aligned_cols=26 Identities=4% Similarity=-0.035 Sum_probs=14.6
Q ss_pred cceecceeEEEEec-ChhHHHHHHHHH
Q 014357 300 RIWVFNSGFFYIRP-TIPSIELLDRVA 325 (426)
Q Consensus 300 ~~~~~NtGf~y~R~-T~~s~~fl~~w~ 325 (426)
+.|...=.+.+.+| -+.+.+.++.|.
T Consensus 273 rqF~q~E~~~f~~p~~e~s~~~~~e~~ 299 (421)
T 1ses_A 273 HQFHKVEQYVLTEASLEASDRAFQELL 299 (421)
T ss_dssp SEEEEEEEEEEECSCHHHHHHHHHHHH
T ss_pred eeeeeeeEEEEeCCCHHHHHHHHHHHH
Confidence 44555667777777 244554445553
No 283
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=26.48 E-value=2.2e+02 Score=21.80 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQ 115 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~ 115 (426)
|-+|-.+|+..+.-|.+.|+.--+-+-.||...||..-..++.+..+...
T Consensus 15 rKnma~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~r 64 (72)
T 2xu6_A 15 QKNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDR 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55677889999999999998888888888888888887777777766554
No 284
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=26.35 E-value=1.1e+02 Score=19.80 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=17.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 74 IASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 74 ~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
..||+.|-+||-.+-.+|+..+..
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~R 25 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLAR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHH
Confidence 457778888887777777766543
No 285
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=26.24 E-value=56 Score=33.03 Aligned_cols=29 Identities=28% Similarity=0.196 Sum_probs=15.8
Q ss_pred CCeEEEEeCCccC-hHHHHHHh-hhhhccCc
Q 014357 385 LKPVVVHVNYHPD-KFPRMLAI-VEFYVNGK 413 (426)
Q Consensus 385 ~~P~iVH~N~~~~-K~~Rlre~-~~wyl~~~ 413 (426)
.++.+||+-+-.+ =..|+-.+ .+=|.+++
T Consensus 374 ~k~~~vHtl~Gs~~av~R~i~allE~~~~~~ 404 (425)
T 2dq3_A 374 GKNRFVHTLNGSGLAVGRTLAAILENYQQED 404 (425)
T ss_dssp CSEEECEEEEEEEEEHHHHHHHHHHHTBCTT
T ss_pred CeeEEEEEEeccccHHHHHHHHHHHhCCCCC
Confidence 5678999433232 25665444 45566544
No 286
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=26.15 E-value=89 Score=28.62 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 014357 68 NMLKSDIASLTEKNAELQKQVRQLTA 93 (426)
Q Consensus 68 ~~l~~~~~~~~~~~~~l~~~~~~l~~ 93 (426)
..|..+|.++++|++.|+++..+|++
T Consensus 118 ~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666655
No 287
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=26.07 E-value=1.3e+02 Score=23.26 Aligned_cols=48 Identities=25% Similarity=0.339 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccccCC
Q 014357 69 MLKSDIASLTEKNAE---LQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGP 120 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~---l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~~~~~ 120 (426)
...+|+..+.+-.|| .++-|++|+||... ..||-+.+..|-++|+-|-
T Consensus 16 kirseie~ikkiiaefdvvke~v~~l~ekakt----~pqaae~ln~liegyt~ge 66 (95)
T 1xou_B 16 KIRSEIEAIKKIIAEFDVVKESVNELSEKAKT----DPQAAEKLNKLIEGYTYGE 66 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CHHHHHHHHHHHHhhcchh
Confidence 345677666665555 47789999998533 4556667777777777664
No 288
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=25.94 E-value=3.7e+02 Score=24.33 Aligned_cols=28 Identities=21% Similarity=0.097 Sum_probs=16.7
Q ss_pred CcceEEecccEEeecCcccccccCCcEe
Q 014357 240 DYSVLLSDIDIVFLQNPFEYLYRDSDVE 267 (426)
Q Consensus 240 Gy~VL~sDvDVVWlrnP~~~~~~daDi~ 267 (426)
.-.|++...|+++-...+..+...+|..
T Consensus 106 ~~~~lV~~gD~l~~~~~~~~~~~~~~~~ 133 (255)
T 4evw_A 106 QGSITVFNIDTFRPNFVFPDISQHSDGY 133 (255)
T ss_dssp CSCEEECCTTEECTTCCCCGGGGSSSEE
T ss_pred CCcEEEEeCCEEEecchhHHHhhcCCcE
Confidence 3358999999955344455444455533
No 289
>2p6w_A VP54, putative glycosyltransferase (mannosyltransferase in glycosylating the PBCV-1 major...; HET: FLC; 1.60A {Paramecium bursaria chlorella virus 1} PDB: 2p72_A* 2p73_A*
Probab=25.81 E-value=94 Score=28.49 Aligned_cols=150 Identities=16% Similarity=0.162 Sum_probs=78.4
Q ss_pred CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEeCHHHHHHHHHCCCCEEEeCCCCCcccccccCcchhhHhhHHHH
Q 014357 153 GKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDDQTAEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGLKFRV 232 (426)
Q Consensus 153 d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAlD~~a~~~c~~~g~~c~~~~~~~g~d~~~gs~~f~~m~~~K~~~ 232 (426)
.+.++||-.|..-..+++.-+.+ =.++|+.+|+..|..+... . ++.. ...-|.|.=+
T Consensus 6 p~IllvtGs~p~ew~yl~ksiKN-----------------K~DYArrHGYelfy~d~~l--~---k~~e-~a~eW~ksW~ 62 (213)
T 2p6w_A 6 PCITILSGHFPKETIYARKTKEL-----------------VEEYCSIHGYNFYYEESEP--L---ETEE-HALHFRRSWI 62 (213)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHH-----------------HHHHHHHHTCEEEEECSCC--S---CCSH-HHHHHTHHHH
T ss_pred ceEEEEeCCCCCCcHHHHHHHHH-----------------HHHHHHHcCCeEEEeeccc--c---cchh-hcccchhhHH
Confidence 56778887777755555544443 2378888888877743211 0 1111 2223444447
Q ss_pred HHHHHhcCc---ceEEecccEEee-cCcccccccCCcEeeccCCCCCCcccCCCCCCCCCccchhhhcccccceecceeE
Q 014357 233 LREFLQLDY---SVLLSDIDIVFL-QNPFEYLYRDSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRIWVFNSGF 308 (426)
Q Consensus 233 l~~vL~lGy---~VL~sDvDVVWl-rnP~~~~~~daDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~~~~~~~~NtGf 308 (426)
++.....-- -+.+.|.|++.. .||-.-+.+.-|+ .| ++ ..-.||. + ..|.. ..+|+|.
T Consensus 63 IR~AM~khPeAEWfWWLDsDAlIMDmnf~lPLe~yldl---~~-~N-lvvHGw~----e--~~~~~-------~~lNtGv 124 (213)
T 2p6w_A 63 IQQAAEKFPSTEWFLWLDSDVYVNPKNKNKPITSFIDL---SD-PN-ILYHTFH----E--APWGS-------YPINTGV 124 (213)
T ss_dssp HHHHHHHCTTCSEEEEECTTEEECGGGTTSCGGGTCCC---CC-TT-CCEEEEC----C--TTTSS-------SSCCTTE
T ss_pred HHHHHHHCCCceEEEEecCCceeecCCCCCcHHHcccc---cc-Cc-eeecccc----c--ccccc-------cccccee
Confidence 777776544 388899999887 2343333222121 11 11 0111221 1 12332 2589999
Q ss_pred EEEecChhHHHHHHHHHHHhC---CCCCCchHHHHHHhc
Q 014357 309 FYIRPTIPSIELLDRVADRLG---KEKAWDQAVFNEELF 344 (426)
Q Consensus 309 ~y~R~T~~s~~fl~~w~~rl~---~~~~~DQ~afN~ll~ 344 (426)
|++..++--++=. .|.-++. .+-..+|....+.++
T Consensus 125 fL~~~~~~~irnc-qWSld~~~~w~~~~~~~~~~~~~~~ 162 (213)
T 2p6w_A 125 KFVHKDALEIEKI-VWSLRNEAPWNTFPYEQKTVYEYVF 162 (213)
T ss_dssp EEEEGGGHHHHHH-HHHTTTSTTTTSTTTHHHHHHHTHH
T ss_pred eeecccchhhhhc-eeehhhhhcccCCCcccceeeeeec
Confidence 9966665444322 2422221 234568888777664
No 290
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=25.80 E-value=90 Score=20.71 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 014357 70 LKSDIASLTEKNAELQKQVRQL 91 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l 91 (426)
|-.++.+-.++.+.|+++-.||
T Consensus 12 Lhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 12 LHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHH
Confidence 4444444444444454444444
No 291
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=25.49 E-value=1.8e+02 Score=21.11 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHh
Q 014357 69 MLKSDIASLTEKN 81 (426)
Q Consensus 69 ~l~~~~~~~~~~~ 81 (426)
.|+.|+..|.++|
T Consensus 14 aLkDqV~eL~qe~ 26 (56)
T 2w6b_A 14 ALKDEVQELRQDN 26 (56)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 292
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=25.19 E-value=1.6e+02 Score=24.44 Aligned_cols=51 Identities=12% Similarity=0.194 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 63 SPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 63 ~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
.-+-++.|..++.++.+.-+.+.++-.+|++.++.+ +..-.+||.+|.+++
T Consensus 4 t~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k---~E~~k~qV~~L~~~~ 54 (112)
T 1x79_B 4 TRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQS---SEDSSHQISALVLRA 54 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 345677888888888888888888888888775432 233345666665544
No 293
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=25.18 E-value=1.1e+02 Score=21.91 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=9.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 014357 74 IASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 74 ~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
+..|+.+.+.|.++-..|.+++.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~ 46 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELK 46 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 294
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=25.14 E-value=1e+02 Score=24.22 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=9.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHh
Q 014357 79 EKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 79 ~~~~~l~~~~~~l~~kl~~a~ 99 (426)
+||..|.+++..+.+.+...+
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk 58 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLR 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554444444433
No 295
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=24.93 E-value=1.1e+02 Score=26.14 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014357 62 ESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQ 108 (426)
Q Consensus 62 ~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~ 108 (426)
...|=+..|+..+..|++....|.+++.++++++...+..-.+.+++
T Consensus 95 ~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 95 SIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788999999999999999999999999988888777766643
No 296
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=24.85 E-value=3.8e+02 Score=24.29 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=9.8
Q ss_pred HHHHHHHhcCcceEEec
Q 014357 231 RVLREFLQLDYSVLLSD 247 (426)
Q Consensus 231 ~~l~~vL~lGy~VL~sD 247 (426)
..++.++++|.+-++||
T Consensus 222 ~~~~~l~~~GVdgIiTD 238 (252)
T 3qvq_A 222 SLALKLYNQGLDAVFSD 238 (252)
T ss_dssp HHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHcCCCEEEeC
Confidence 34555566666666655
No 297
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=24.84 E-value=1.1e+02 Score=28.50 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
.||+..|...+..+++.-.+..|+++.++++|+..+
T Consensus 12 EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~ 47 (233)
T 2yko_A 12 EERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIW 47 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888887777777788888888777664
No 298
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.60 E-value=75 Score=31.21 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=24.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
+|++++++|-+.|+++..++++|...+|+--+...
T Consensus 3 ~~~~~~~~e~~~~~~~~~~vq~kA~~~E~~Yn~~~ 37 (333)
T 4etp_B 3 SEIAALEKEIAALEKEIAALEKEISKQEKFYNDTY 37 (333)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888888888888888877665543
No 299
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.38 E-value=1e+02 Score=31.22 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRL 97 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~ 97 (426)
..|++.|+.++..|+-+++.++.|.+.++.++..
T Consensus 48 ~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~ 81 (428)
T 4b4t_K 48 YFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKR 81 (428)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777776666665543
No 300
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=24.37 E-value=1.6e+02 Score=28.39 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014357 62 ESPERVNMLKSDIASLTEKNAELQKQVRQLTAK 94 (426)
Q Consensus 62 ~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k 94 (426)
.+.+.++.|+.++..++++..+++++++++.++
T Consensus 223 ~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 223 PLGKAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555788999999999999999999999998887
No 301
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=24.33 E-value=3.3e+02 Score=24.25 Aligned_cols=93 Identities=8% Similarity=0.000 Sum_probs=52.1
Q ss_pred HHHHhcC--CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEeC--HHHHHHHHHCCCCEEEeCCCCC-cccccccC
Q 014357 146 ILEEVAV--GKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALD--DQTAEYCKTNDIPVYQRDPDEG-IDSIARKG 220 (426)
Q Consensus 146 lL~~~A~--d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAlD--~~a~~~c~~~g~~c~~~~~~~g-~d~~~gs~ 220 (426)
-+++.|. +-.+++..++... +-....++.+..-+++-+++...+ +...+.+.+.|+|++.++.... ....+=..
T Consensus 29 gi~~~a~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~ 107 (291)
T 3egc_A 29 GVESEARHKGYSVLLANTAEDI-VREREAVGQFFERRVDGLILAPSEGEHDYLRTELPKTFPIVAVNRELRIPGCGAVLS 107 (291)
T ss_dssp HHHHHHHHTTCEEEEEECTTCH-HHHHHHHHHHHHTTCSEEEECCCSSCCHHHHHSSCTTSCEEEESSCCCCTTCEEEEE
T ss_pred HHHHHHHHCCCEEEEEeCCCCH-HHHHHHHHHHHHCCCCEEEEeCCCCChHHHHHhhccCCCEEEEecccCCCCCCEEEE
Confidence 3334443 4566665555443 223445566666688888888774 5667777788999998875421 11111011
Q ss_pred cchhhHhhHHHHHHHHHhcCcc
Q 014357 221 GNHAVSGLKFRVLREFLQLDYS 242 (426)
Q Consensus 221 ~f~~m~~~K~~~l~~vL~lGy~ 242 (426)
++...+. ..+..++++|+.
T Consensus 108 D~~~~g~---~a~~~L~~~G~~ 126 (291)
T 3egc_A 108 ENVRGAR---TAVEYLIARGHT 126 (291)
T ss_dssp CHHHHHH---HHHHHHHHTTCC
T ss_pred CcHHHHH---HHHHHHHHcCCC
Confidence 2222222 255667778884
No 302
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=24.19 E-value=57 Score=27.13 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 014357 71 KSDIASLTEKNAELQKQVRQLTAKLRLAEQGKD 103 (426)
Q Consensus 71 ~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~ 103 (426)
++.+..|+.|.+||++|+.+..+......+-++
T Consensus 68 ~~~Vs~lq~KiaeLKrqLAd~va~~k~~~k~~D 100 (113)
T 4fi5_A 68 EGVAVSIQAKIDELKRQLADRIATGKNLGKEQD 100 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC
No 303
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=24.05 E-value=78 Score=27.23 Aligned_cols=32 Identities=13% Similarity=0.021 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
.++..+|+.++..|+++.++|++....|..++
T Consensus 89 ~~~~~ll~~~~~~l~~qi~~L~~~~~~L~~~~ 120 (154)
T 2zhg_A 89 KEWKQLSSQWREELDRRIHTLVALRDELDGCI 120 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777776654
No 304
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.93 E-value=1.2e+02 Score=26.63 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGE 114 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~ 114 (426)
++.++.++..+.+....++..|.++|....+.+.+|+++...+..
T Consensus 42 ~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ 86 (154)
T 2ocy_A 42 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNK 86 (154)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666677777777777777777777766655544
No 305
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=23.91 E-value=1.8e+02 Score=20.28 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
.|+.-++.|+..|+.|.|.+..|+..+.-.
T Consensus 21 klenivarlendnanlekdianlekdianl 50 (56)
T 3he4_A 21 KLENIVARLENDNANLEKDIANLEKDIANL 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 455566777777777777777766554433
No 306
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=23.76 E-value=1.4e+02 Score=19.59 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=15.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 014357 74 IASLTEKNAELQKQVRQLTAKLR 96 (426)
Q Consensus 74 ~~~~~~~~~~l~~~~~~l~~kl~ 96 (426)
..||+.|-+||-.+-.+|+..+.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~ 25 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVX 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHH
Confidence 45677777777777777766544
No 307
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=23.73 E-value=56 Score=32.04 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=10.1
Q ss_pred hHHHHHHHHHhcCcceEEe
Q 014357 228 LKFRVLREFLQLDYSVLLS 246 (426)
Q Consensus 228 ~K~~~l~~vL~lGy~VL~s 246 (426)
+=..-|+.|...+-..|..
T Consensus 158 LGle~ih~LT~~~~~eL~i 176 (323)
T 1lwu_B 158 LGTKTVHQLTKQHTQQVLF 176 (323)
T ss_dssp ECHHHHHHHHHHSCEEEEE
T ss_pred eeccceeeecCCCCEEEEE
Confidence 3444555666566554543
No 308
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=23.69 E-value=1.5e+02 Score=23.31 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
+|.+....+.+.++..|..|...+.||+...
T Consensus 49 ~r~~e~e~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 49 QRAKDLENRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3344444444555555555555666665543
No 309
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=23.58 E-value=1.3e+02 Score=23.53 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 014357 79 EKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMV 111 (426)
Q Consensus 79 ~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~ 111 (426)
.+...|-.+||+|+-|+...|..+.|-++.+-+
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKs 51 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKA 51 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 310
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=23.43 E-value=5e+02 Score=24.92 Aligned_cols=112 Identities=17% Similarity=0.263 Sum_probs=65.2
Q ss_pred ccCCCCCchhHHHHHHHhcC--CCeE-EEEEcCcchH-HHHHHHHHHHHHc---CCC-cEEEEEeCHHHHHHHHHCCCCE
Q 014357 133 VVPDESVNPRLAKILEEVAV--GKEL-IVALANSNVK-SMLEVWSTNIKRV---GIT-NYLVVALDDQTAEYCKTNDIPV 204 (426)
Q Consensus 133 ~~p~~~~~p~L~~lL~~~A~--d~~V-Ivt~~N~~~~-d~~~Nwl~slkr~---Gi~-n~lVvAlD~~a~~~c~~~g~~c 204 (426)
|+=+..-|+++ |++.-. +-+| |+.++-..|. .|++.|++|..+. |.+ +|.|++=+.+.. |-
T Consensus 28 ivwegtf~~~~---l~~~~~~~n~tIGl~vfa~GkY~~~fl~~Fl~SAEk~Fm~g~~v~YYVFTD~~~~~--------p~ 96 (289)
T 1o7q_A 28 VVWEGTYNRAV---LDNYYAKQKITVGLTVFAVGRYIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVSRM--------PL 96 (289)
T ss_dssp EECTTSBCHHH---HHHHHHHHTCCEEEEEEECTTHHHHHHHHHHHHHHHHBSTTSCEEEEEEESCGGGC--------CC
T ss_pred EeecCcCCHHH---HHHHHHhhCCeEEEEEEEecccHHHHHHHHHHHHHHhccCCCeEEEEEEeCChhhC--------Cc
Confidence 33355555543 444332 3344 4446667798 8999999999875 654 566666554432 22
Q ss_pred EEeCCCCCcc--cccccCcchhhHhhHHHHHHHHHhc----Ccc-eEEecccEEeecC
Q 014357 205 YQRDPDEGID--SIARKGGNHAVSGLKFRVLREFLQL----DYS-VLLSDIDIVFLQN 255 (426)
Q Consensus 205 ~~~~~~~g~d--~~~gs~~f~~m~~~K~~~l~~vL~l----Gy~-VL~sDvDVVWlrn 255 (426)
+.+.+..... .......+..++-.|...+....+. ..| +.+.|+|.++..+
T Consensus 97 v~l~~~r~~~V~~i~~~~~W~d~sm~Rm~~i~~~~~~~~~~evDYLf~~dvd~~F~~~ 154 (289)
T 1o7q_A 97 IELGPLRSFKVFKIKPEKRWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDK 154 (289)
T ss_dssp CCCCTTEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSC
T ss_pred cccCCCCeEEEEEeccccCCchhHHHHHHHHHHHHHHHHhhcCCEEEEeeCCcEeecc
Confidence 2222211101 0112344777777888888886632 345 5667999998774
No 311
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=23.18 E-value=90 Score=27.92 Aligned_cols=32 Identities=9% Similarity=0.230 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
.|+.++.++++..+.-..|+++|+++++..|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 35 (198)
T 4ghu_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666666666666666677777777776663
No 312
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=23.02 E-value=1.4e+02 Score=28.91 Aligned_cols=109 Identities=15% Similarity=0.238 Sum_probs=63.1
Q ss_pred CCCCchhHHHHHHHhcC--CCeEEE-EEcCcchHHHHHHHHHHHHHc---CCC-cEEEEEeCHHHHHHHHHCCCCEEEeC
Q 014357 136 DESVNPRLAKILEEVAV--GKELIV-ALANSNVKSMLEVWSTNIKRV---GIT-NYLVVALDDQTAEYCKTNDIPVYQRD 208 (426)
Q Consensus 136 ~~~~~p~L~~lL~~~A~--d~~VIv-t~~N~~~~d~~~Nwl~slkr~---Gi~-n~lVvAlD~~a~~~c~~~g~~c~~~~ 208 (426)
+..-|++ +|++.-. |=||-+ .++-..|..|++.|++|..+. |.+ +|.|++-+.+.. |-+.+.
T Consensus 41 egtf~~~---il~~~y~~~n~tIGl~vfA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~~~~v--------P~v~l~ 109 (298)
T 3ioh_A 41 EGTFNID---ILNEQFRLQNTTIGLTVFAIKKYVAFLKLFLETAEKHFMVGHRVHYYVFTDQPAAV--------PRVTLG 109 (298)
T ss_dssp TTSCCHH---HHHHHHHHTTCEEEEEEEECGGGGGGHHHHHHHHHHHBSTTSEEEEEEEESCGGGS--------CCCCCC
T ss_pred cCcCCHH---HHHHHHHHhCCcEEEEEEEeCcHHHHHHHHHHhHHHhccCCceEEEEEEeCChhhC--------CccccC
Confidence 4444444 4555443 445533 466667888999999999875 664 566666544332 222211
Q ss_pred CCCCccc--ccccCcchhhHhhHHHHHHHHHhc----Ccc-eEEecccEEeecC
Q 014357 209 PDEGIDS--IARKGGNHAVSGLKFRVLREFLQL----DYS-VLLSDIDIVFLQN 255 (426)
Q Consensus 209 ~~~g~d~--~~gs~~f~~m~~~K~~~l~~vL~l----Gy~-VL~sDvDVVWlrn 255 (426)
+...... ..+...+..++..|...+....+. -.| +.+.|+|.++..+
T Consensus 110 ~~r~~~V~~v~~~~~Wqd~sm~Rm~~i~~~~~~~~~~EvDyLfc~dvd~~F~~~ 163 (298)
T 3ioh_A 110 TGRQLSVLEVRAYKRWQDVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDH 163 (298)
T ss_dssp TTEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHTHHHHCSEEEEEESSEEECSC
T ss_pred CCCeEEEEEeccccCCccccHHHHHHHHHHHHHHHhhcCCEEEEecCCCeeccC
Confidence 1111110 112345677777788888776653 345 6677999998764
No 313
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=22.94 E-value=1.8e+02 Score=26.92 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeCHH-----HHHHHHHCCCCEEEeCCCCCcccccccCcchhhHhhHHHHHHHHHhcCcc
Q 014357 168 MLEVWSTNIKRVGITNYLVVALDDQ-----TAEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGLKFRVLREFLQLDYS 242 (426)
Q Consensus 168 ~~~Nwl~slkr~Gi~n~lVvAlD~~-----a~~~c~~~g~~c~~~~~~~g~d~~~gs~~f~~m~~~K~~~l~~vL~lGy~ 242 (426)
..+...+-++++|++.++..+++.+ .-..|.+.|+-++. |. |+. ..-.+++++++.|+.
T Consensus 78 e~e~l~~~l~~~~i~~vv~Gdi~s~yqr~r~e~vc~~~gl~~~~--PL------W~~--------d~~~Ll~e~i~~G~~ 141 (237)
T 3rjz_A 78 EVEDLKRVLSGLKIQGIVAGALASKYQRKRIEKVAKELGLEVYT--PA------WGR--------DAKEYMRELLNLGFK 141 (237)
T ss_dssp CHHHHHHHHTTSCCSEEECC---CCSHHHHHHHHHHHTTCEEEC--SS------SSC--------CHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHhcCCcEEEECCcchHHHHHHHHHHHHHcCCEEEc--cc------cCC--------CHHHHHHHHHHCCCE
Confidence 3455556666778888888888632 34457778876553 21 211 245799999999999
Q ss_pred eEEecccEEee
Q 014357 243 VLLSDIDIVFL 253 (426)
Q Consensus 243 VL~sDvDVVWl 253 (426)
.+++-+|..-|
T Consensus 142 aiiv~v~~~gL 152 (237)
T 3rjz_A 142 IMVVGVSAYGL 152 (237)
T ss_dssp EEEEEEESTTC
T ss_pred EEEEEEecCCC
Confidence 99988776544
No 314
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.89 E-value=1.9e+02 Score=29.24 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Q 014357 66 RVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 66 r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~~~~ 116 (426)
..+.+..++.+++.....-..++++|++.+...++...+-++++..|....
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 444555566666665555566777777776665555555556666666544
No 315
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=22.34 E-value=1.2e+02 Score=24.73 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=17.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
.++..|.+|.++|+.+-..|+++....|
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666655544
No 316
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=22.30 E-value=1.3e+02 Score=23.51 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQ 100 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~q 100 (426)
++|..++.++..|+++|..|+.=+.+.+.=....++
T Consensus 41 ~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl~~ 76 (79)
T 2zxx_A 41 KEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIER 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 317
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.27 E-value=96 Score=31.05 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHhhccc
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAK----LRLAEQGKDQAQKQVMVLGEQH 116 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~k----l~~a~qg~~~a~~~~~~~~~~~ 116 (426)
+..+.|+.+|..+++.-..+++|.+.-.-. ..-.|+.+.|++|.+..|+-++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEI 452 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668888888888888888887643222 1122344445555555544433
No 318
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=22.23 E-value=2e+02 Score=23.18 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=13.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHh
Q 014357 79 EKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 79 ~~~~~l~~~~~~l~~kl~~a~ 99 (426)
++..||+-||..|..||+-|.
T Consensus 67 ~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 67 ARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777776665
No 319
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=22.21 E-value=2.5e+02 Score=25.90 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeCHHHHHHHHHCCCCEEE
Q 014357 167 SMLEVWSTNIKRVGITNYLVVALDDQTAEYCKTNDIPVYQ 206 (426)
Q Consensus 167 d~~~Nwl~slkr~Gi~n~lVvAlD~~a~~~c~~~g~~c~~ 206 (426)
.|+.--++.+++.|++.++|++-|+...+.|...|+.+..
T Consensus 35 Pli~~~l~~l~~~~i~~VvVvt~~~~i~~~~~~~g~~v~~ 74 (256)
T 3tqd_A 35 PMIQHVYESAIKSGAEEVVIATDDKRIRQVAEDFGAVVCM 74 (256)
T ss_dssp EHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEE
T ss_pred hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHcCCeEEE
Confidence 4677777788888999998888778888888888887665
No 320
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=22.20 E-value=2.3e+02 Score=24.26 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 014357 62 ESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQ 106 (426)
Q Consensus 62 ~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~ 106 (426)
.+||--..|+ .++.+++......+++.++...|..-+||=-+..
T Consensus 12 ~~peee~~lK-kL~dveksv~~~~k~l~~l~~el~~iekGFL~k~ 55 (135)
T 1i6z_A 12 SNPEEEVELK-KLKDLEVSAEKIANHLQELNKELSGIQQGFLAKE 55 (135)
T ss_dssp CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHH
T ss_pred CChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 3466556666 8899999999999999999999999999974444
No 321
>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=22.11 E-value=23 Score=32.43 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
++-++.++.+.++++++.++.+++..+|.++|
T Consensus 90 ~~nlk~~e~~~~~~e~~~~~~~~~A~~la~~L 121 (197)
T 3bbo_J 90 PLLLKELKMEDERIEAEKQRVKEEAQQLAMVF 121 (197)
T ss_dssp HHHHHHHHTTTHHHHGGGTTTTHHHHTHHHHS
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 66677777777777777766666666666655
No 322
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=22.08 E-value=3e+02 Score=22.07 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 014357 69 MLKSDIASLTEKNAELQKQVRQLTA 93 (426)
Q Consensus 69 ~l~~~~~~~~~~~~~l~~~~~~l~~ 93 (426)
.|+..|.+.++-.+.-..++.+|++
T Consensus 6 ~L~~~L~~aEeaL~~kq~~id~lke 30 (94)
T 3jsv_C 6 DLRQQLQQAEEALVAKQELIDKLKE 30 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444444444444443333444444
No 323
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=22.03 E-value=95 Score=25.01 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=21.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 72 SDIASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
..+..+-+++.+|++++.+|+.+|...
T Consensus 72 ~ki~~~~~~d~~l~~~i~~l~~~l~~~ 98 (101)
T 3pvv_A 72 RKILSEMAERREVFDHVKELTTRIRQR 98 (101)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHhh
Confidence 345555667999999999999998753
No 324
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=22.01 E-value=66 Score=25.27 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=25.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014357 59 SSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 59 ~~~~~~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl 95 (426)
+..++++-+..||.+++.|..+-.+.+-++-||.|-|
T Consensus 9 ~~~~t~~di~eLkkevkKL~~~A~q~kmdLHDLaEdL 45 (81)
T 3csx_A 9 DNNPTPEAVADLKKKVRKLNSKAGQMKMDLHDLAEGL 45 (81)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4445567889999999999999999999999888753
No 325
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=21.91 E-value=4.2e+02 Score=23.72 Aligned_cols=94 Identities=12% Similarity=0.132 Sum_probs=51.1
Q ss_pred HHHHHhcC--CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEeC--HHHHHHHHHCCCCEEEeCCCCC-c--cccc
Q 014357 145 KILEEVAV--GKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALD--DQTAEYCKTNDIPVYQRDPDEG-I--DSIA 217 (426)
Q Consensus 145 ~lL~~~A~--d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAlD--~~a~~~c~~~g~~c~~~~~~~g-~--d~~~ 217 (426)
.-+++.|. +-.+++..++.. .+-....++.+...+++-++++..+ +...+.+.+.|+|++.++.... . ...+
T Consensus 32 ~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~~~ 110 (295)
T 3hcw_A 32 LGISETCNQHGYGTQTTVSNNM-NDLMDEVYKMIKQRMVDAFILLYSKENDPIKQMLIDESMPFIVIGKPTSDIDHQFTH 110 (295)
T ss_dssp HHHHHHHHTTTCEEEECCCCSH-HHHHHHHHHHHHTTCCSEEEESCCCTTCHHHHHHHHTTCCEEEESCCCSSGGGGSCE
T ss_pred HHHHHHHHHCCCEEEEEcCCCC-hHHHHHHHHHHHhCCcCEEEEcCcccChHHHHHHHhCCCCEEEECCCCccccCCceE
Confidence 33344444 334444333322 2334456667766788888887654 4667788899999998875421 1 1111
Q ss_pred ccCcchhhHhhHHHHHHHHHhcCcc
Q 014357 218 RKGGNHAVSGLKFRVLREFLQLDYS 242 (426)
Q Consensus 218 gs~~f~~m~~~K~~~l~~vL~lGy~ 242 (426)
=..++...+. ..+..++++|+.
T Consensus 111 V~~D~~~~~~---~a~~~L~~~G~~ 132 (295)
T 3hcw_A 111 IDNDNILASE---NLTRHVIEQGVD 132 (295)
T ss_dssp EEECHHHHHH---HHHHHHHHHCCS
T ss_pred EecCcHHHHH---HHHHHHHHcCCc
Confidence 0112222222 256667788985
No 326
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=21.79 E-value=2.9e+02 Score=26.90 Aligned_cols=105 Identities=13% Similarity=0.127 Sum_probs=64.0
Q ss_pred eEEEEEcCcchHHHHHHHHHHHHHcC--C-CcEEEEEeCH---HHHHHHHHCCCCEEEe-CCCCCc----ccccccCcch
Q 014357 155 ELIVALANSNVKSMLEVWSTNIKRVG--I-TNYLVVALDD---QTAEYCKTNDIPVYQR-DPDEGI----DSIARKGGNH 223 (426)
Q Consensus 155 ~VIvt~~N~~~~d~~~Nwl~slkr~G--i-~n~lVvAlD~---~a~~~c~~~g~~c~~~-~~~~g~----d~~~gs~~f~ 223 (426)
.|||.+.|.. + +..-|+|+.+.- . +..+|++-|. ++.+.+++.+.+.-.. .++.+. +...|-.+|.
T Consensus 5 pViI~~yNRp--~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g~~~y~ 81 (343)
T 1fo8_A 5 PILVIACDRS--T-VRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYY 81 (343)
T ss_dssp CEEEEESSCT--T-HHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHH
T ss_pred cEEEEECCcH--H-HHHHHHHHHhcCCCcCCcEEEEEECCCCHHHHHHHHHcCCceEEEEcCCccccccchhhcCcccch
Confidence 4888888988 5 888899998874 3 2457777665 5566666544332221 222221 1011222344
Q ss_pred hhHhhHHHHHHHHHh--cCcceEEecccEEeecCccccccc
Q 014357 224 AVSGLKFRVLREFLQ--LDYSVLLSDIDIVFLQNPFEYLYR 262 (426)
Q Consensus 224 ~m~~~K~~~l~~vL~--lGy~VL~sDvDVVWlrnP~~~~~~ 262 (426)
.+...-...+..+.+ .+=.|++.|-|++.-.|=+.||..
T Consensus 82 ~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~ 122 (343)
T 1fo8_A 82 KIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQA 122 (343)
T ss_dssp HHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHH
Confidence 455544455666665 455799999999998888887754
No 327
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=21.70 E-value=1.6e+02 Score=27.36 Aligned_cols=67 Identities=22% Similarity=0.262 Sum_probs=44.8
Q ss_pred hHHHHHHHhcC----CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEeCHHHHHHHHHCCCCEEEeCC
Q 014357 142 RLAKILEEVAV----GKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDDQTAEYCKTNDIPVYQRDP 209 (426)
Q Consensus 142 ~L~~lL~~~A~----d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAlD~~a~~~c~~~g~~c~~~~~ 209 (426)
+|+++.+..|. ++.+|=.=+-+.-.-|++-.-+.++.-|+ ++..++....+.+.|+++|+|...++.
T Consensus 6 ~~K~~aa~~A~~~V~~gmvvGlGTGSTv~~~i~~L~~~~~~~~l-~i~~V~tS~~t~~~a~~~Gi~l~~l~~ 76 (228)
T 4gmk_A 6 ELKQLVGTKAVEWIKDGMIVGLGTGSTVKYMVDALGKRVNEEGL-DIVGVTTSIRTAEQAKSLGIVIKDIDE 76 (228)
T ss_dssp HHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHHHCC-CCEEEESSHHHHHHHHHTTCCBCCGGG
T ss_pred HHHHHHHHHHHHhCCCCCEEEECchHHHHHHHHHHHHHHhhcCC-cEEEEeCcHHHHHHHHHcCCceeChHH
Confidence 67888777774 55544333333333344444444444577 688899999999999999999887653
No 328
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=21.68 E-value=3.1e+02 Score=24.74 Aligned_cols=93 Identities=9% Similarity=0.101 Sum_probs=51.9
Q ss_pred HHHHhcC--CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEeC--HHHHHHHHHCCCCEEEeCCCCCcc-cccccC
Q 014357 146 ILEEVAV--GKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALD--DQTAEYCKTNDIPVYQRDPDEGID-SIARKG 220 (426)
Q Consensus 146 lL~~~A~--d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAlD--~~a~~~c~~~g~~c~~~~~~~g~d-~~~gs~ 220 (426)
-+++.|. +-.+++..++.. .+-....++.+...+++-+++...+ ++..+.+.+.|+|++.++...... ..+=..
T Consensus 48 gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~ 126 (305)
T 3huu_A 48 GINQACNVRGYSTRMTVSENS-GDLYHEVKTMIQSKSVDGFILLYSLKDDPIEHLLNEFKVPYLIVGKSLNYENIIHIDN 126 (305)
T ss_dssp HHHHHHHHHTCEEEECCCSSH-HHHHHHHHHHHHTTCCSEEEESSCBTTCHHHHHHHHTTCCEEEESCCCSSTTCCEEEC
T ss_pred HHHHHHHHCCCEEEEEeCCCC-hHHHHHHHHHHHhCCCCEEEEeCCcCCcHHHHHHHHcCCCEEEECCCCcccCCcEEEe
Confidence 3334443 445555444332 2334556667766788888887654 566778889999999887543111 111011
Q ss_pred cchhhHhhHHHHHHHHHhcCcc
Q 014357 221 GNHAVSGLKFRVLREFLQLDYS 242 (426)
Q Consensus 221 ~f~~m~~~K~~~l~~vL~lGy~ 242 (426)
++...+. ..+..++++|+.
T Consensus 127 D~~~~g~---~a~~~L~~~G~~ 145 (305)
T 3huu_A 127 DNIDAAY---QLTQYLYHLGHR 145 (305)
T ss_dssp CHHHHHH---HHHHHHHHTTCC
T ss_pred CHHHHHH---HHHHHHHHCCCC
Confidence 2222222 255677788984
No 329
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=21.60 E-value=2e+02 Score=26.95 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLG 113 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~a~~~~~~~~ 113 (426)
=+|..+||..|..|.+.|+.--+-+-+||...||-.-..+..+....
T Consensus 172 K~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~ 218 (242)
T 3uux_B 172 KNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQID 218 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 35667777888888888777777777778777777666665554433
No 330
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=21.54 E-value=1.1e+02 Score=21.45 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=7.5
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 014357 73 DIASLTEKNAELQKQVRQL 91 (426)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~l 91 (426)
.|.+|+++.+++-+++..|
T Consensus 24 ~l~~Lt~kL~~vt~rle~l 42 (47)
T 1aq5_A 24 LINTLQQKLEAVAKRIEAL 42 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333333
No 331
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=21.47 E-value=1.8e+02 Score=24.29 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhH
Q 014357 70 LKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQ 104 (426)
Q Consensus 70 l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg~~~ 104 (426)
|.++-..|+.+..+|+++++-|+..+.....+++.
T Consensus 5 L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~ 39 (122)
T 3viq_A 5 LLSRRLKLEKEVRNLQEQLITAETARKVEAKNEDK 39 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 55666677777777777777777777766666554
No 332
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.47 E-value=1e+02 Score=20.65 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH
Q 014357 83 ELQKQVRQLTAKLRLAEQGKDQ 104 (426)
Q Consensus 83 ~l~~~~~~l~~kl~~a~qg~~~ 104 (426)
|-|.||..|.+||....+.|.|
T Consensus 12 EtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 12 ETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444443
No 333
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=21.35 E-value=90 Score=27.41 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 67 VNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 67 ~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
++.|...+.+|++..+..+.|+.+|++|++..|.+
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (192)
T 1ca9_A 5 IEALSSKVQQLERSIGLKDLAMADLEQKVLEMEAS 39 (192)
T ss_dssp THHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34566666777888888888888888888776654
No 334
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=21.26 E-value=2.8e+02 Score=23.65 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 014357 81 NAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 81 ~~~l~~~~~~l~~kl~~a~ 99 (426)
+.+|.+++.+|+.+.+..+
T Consensus 52 ~~eL~~~~~~Le~~n~~L~ 70 (155)
T 2oto_A 52 AEELEKAKQALEDQRKDLE 70 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555544444333
No 335
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=21.26 E-value=4.3e+02 Score=23.32 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=50.8
Q ss_pred CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEeC-HHHHHHHHHCCCCEEEeCCCCC-cccccccCcchhhHhhHH
Q 014357 153 GKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALD-DQTAEYCKTNDIPVYQRDPDEG-IDSIARKGGNHAVSGLKF 230 (426)
Q Consensus 153 d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAlD-~~a~~~c~~~g~~c~~~~~~~g-~d~~~gs~~f~~m~~~K~ 230 (426)
+-.+++..++... +-....++.+...+++-+++...+ +...+.+.+.|+|++.++.... ....+=..++...+.
T Consensus 37 g~~~~~~~~~~~~-~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~--- 112 (276)
T 3jy6_A 37 GYIGVLFDANADI-EREKTLLRAIGSRGFDGLILQSFSNPQTVQEILHQQMPVVSVDREMDACPWPQVVTDNFEAAK--- 112 (276)
T ss_dssp TCEEEEEECTTCH-HHHHHHHHHHHTTTCSEEEEESSCCHHHHHHHHTTSSCEEEESCCCTTCSSCEEECCHHHHHH---
T ss_pred CCEEEEEeCCCCH-HHHHHHHHHHHhCCCCEEEEecCCcHHHHHHHHHCCCCEEEEecccCCCCCCEEEEChHHHHH---
Confidence 4456665555443 233445666666688888888877 5677788889999998875421 111110112222322
Q ss_pred HHHHHHHhcCcc
Q 014357 231 RVLREFLQLDYS 242 (426)
Q Consensus 231 ~~l~~vL~lGy~ 242 (426)
.....++++|+.
T Consensus 113 ~a~~~L~~~G~~ 124 (276)
T 3jy6_A 113 AATTAFRQQGYQ 124 (276)
T ss_dssp HHHHHHHTTTCC
T ss_pred HHHHHHHHcCCC
Confidence 256677888985
No 336
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=21.11 E-value=1.7e+02 Score=30.24 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=19.9
Q ss_pred HHH-HHHHHHHHHHHhhhhhHHHHHHHHhhc
Q 014357 85 QKQ-VRQLTAKLRLAEQGKDQAQKQVMVLGE 114 (426)
Q Consensus 85 ~~~-~~~l~~kl~~a~qg~~~a~~~~~~~~~ 114 (426)
++| +++|.+++...|+...+.++++..+..
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 139 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLML 139 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566 777777777777777777766655443
No 337
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=21.07 E-value=1.1e+02 Score=23.59 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=26.4
Q ss_pred HHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHh
Q 014357 64 PERVNMLKSDI---ASLTEKNAELQKQVRQLTAKLRLAE 99 (426)
Q Consensus 64 ~~r~~~l~~~~---~~~~~~~~~l~~~~~~l~~kl~~a~ 99 (426)
.+++.+|+.-+ ..|.+++.+|+.+..+|+++++...
T Consensus 39 ~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 39 LNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46777776654 7788888888888888888766543
No 338
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=21.05 E-value=2.6e+02 Score=25.81 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeCHHHHHHHHHCCCCEEE
Q 014357 167 SMLEVWSTNIKRVGITNYLVVALDDQTAEYCKTNDIPVYQ 206 (426)
Q Consensus 167 d~~~Nwl~slkr~Gi~n~lVvAlD~~a~~~c~~~g~~c~~ 206 (426)
.|+.--++.+++.|++.++|++-++...+.+.+.|+.+..
T Consensus 44 Pmi~~~l~~l~~~~i~~IvV~t~~~~i~~~~~~~g~~v~~ 83 (264)
T 3k8d_A 44 PMIVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCM 83 (264)
T ss_dssp EHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEE
T ss_pred EHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHcCCEEEE
Confidence 4777777888888999998888777888888888877654
No 339
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=20.89 E-value=79 Score=21.69 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=20.3
Q ss_pred chhhHHHHHHHH-HHHHHHhhcCCCcccCC
Q 014357 14 SRIAIAIVIGVL-VGCVFAFLFPHGFFSSN 42 (426)
Q Consensus 14 ~~~~~~~~vgv~-lg~~~a~~~~~~~~~s~ 42 (426)
-.|.+|++.|++ |..+...++=-|||++.
T Consensus 11 wiIi~s~l~GLllL~li~~~LwK~GFFkR~ 40 (42)
T 2k1a_A 11 WWVLVGVLGGLLLLTILVLAMWKVGFFKRN 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCC
Confidence 356777777765 45566778888999764
No 340
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=20.62 E-value=92 Score=27.88 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=8.1
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 014357 77 LTEKNAELQKQVRQLTAKL 95 (426)
Q Consensus 77 ~~~~~~~l~~~~~~l~~kl 95 (426)
.++..+.|++++..|+++|
T Consensus 133 AertV~kLqkeiD~LEDeL 151 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKV 151 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444
No 341
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=20.50 E-value=1.5e+02 Score=24.29 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 014357 65 ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQG 101 (426)
Q Consensus 65 ~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a~qg 101 (426)
+|..| ++++.|++|.....+|+-.-++||..|++.
T Consensus 30 ~~~tM--~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~ 64 (107)
T 2k48_A 30 DPFTM--STLQELQENITAHEQQLVTARQKLKDAEKA 64 (107)
T ss_dssp CSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45544 788888888888888888888888887754
No 342
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=20.49 E-value=2.4e+02 Score=25.41 Aligned_cols=83 Identities=13% Similarity=0.201 Sum_probs=48.6
Q ss_pred CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEeC--HHHHHHHHHCCCCEEEeCCCC-C--cccccccCcchhhHh
Q 014357 153 GKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALD--DQTAEYCKTNDIPVYQRDPDE-G--IDSIARKGGNHAVSG 227 (426)
Q Consensus 153 d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAlD--~~a~~~c~~~g~~c~~~~~~~-g--~d~~~gs~~f~~m~~ 227 (426)
+-.+++..++. .+-....++.+...+++-+++...+ ++..+.+.+.|+|++.++... . .+.. +. ++...+.
T Consensus 40 g~~~~~~~~~~--~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~V-~~-D~~~~~~ 115 (294)
T 3qk7_A 40 GLDLLLIPDEP--GEKYQSLIHLVETRRVDALIVAHTQPEDFRLQYLQKQNFPFLALGRSHLPKPYAWF-DF-DNHAGAS 115 (294)
T ss_dssp TCEEEEEEECT--TCCCHHHHHHHHHTCCSEEEECSCCSSCHHHHHHHHTTCCEEEESCCCCSSCCEEE-EE-CHHHHHH
T ss_pred CCEEEEEeCCC--hhhHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHhCCCCEEEECCCCCCCCCCEE-Ec-ChHHHHH
Confidence 45666666653 2223344555655688888887764 466788899999999887532 1 1111 11 2222222
Q ss_pred hHHHHHHHHHhcCcc
Q 014357 228 LKFRVLREFLQLDYS 242 (426)
Q Consensus 228 ~K~~~l~~vL~lGy~ 242 (426)
..+..++++|+.
T Consensus 116 ---~a~~~L~~~G~~ 127 (294)
T 3qk7_A 116 ---LAVKRLLELGHQ 127 (294)
T ss_dssp ---HHHHHHHHTTCC
T ss_pred ---HHHHHHHHCCCc
Confidence 255667788984
No 343
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=20.45 E-value=1.8e+02 Score=23.83 Aligned_cols=29 Identities=7% Similarity=0.201 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLT 92 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~ 92 (426)
.+-++.|+.|+...|.....-++.+++-+
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe 62 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAE 62 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666655555555555544443
No 344
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.14 E-value=1.1e+02 Score=31.69 Aligned_cols=35 Identities=9% Similarity=0.054 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014357 64 PERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLA 98 (426)
Q Consensus 64 ~~r~~~l~~~~~~~~~~~~~l~~~~~~l~~kl~~a 98 (426)
.+++-.|-.+..++..+.++|+++.|+++.++..+
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 66 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKR 66 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777777777777777777766444
No 345
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=20.09 E-value=4.5e+02 Score=23.18 Aligned_cols=65 Identities=11% Similarity=-0.014 Sum_probs=41.8
Q ss_pred HHHHHhcC--CCeEEEEEcCcchHHHHHHHHHHHHHcCCCcEEEEEeC----HHHHHHHHHCCCCEEEeCCC
Q 014357 145 KILEEVAV--GKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALD----DQTAEYCKTNDIPVYQRDPD 210 (426)
Q Consensus 145 ~lL~~~A~--d~~VIvt~~N~~~~d~~~Nwl~slkr~Gi~n~lVvAlD----~~a~~~c~~~g~~c~~~~~~ 210 (426)
.-+++.|. +-.+++..++... +-....++.+...+++-+++...| ....+.+.+.|+|++.++..
T Consensus 25 ~gi~~~a~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 95 (291)
T 3l49_A 25 QAQIAEIERLGGTAIALDAGRND-QTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTA 95 (291)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCH-HHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHcCCEEEEEcCCCCH-HHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCC
Confidence 33444443 4466665555443 223445666666789999988877 45567788899999988754
Done!