Query 014358
Match_columns 426
No_of_seqs 168 out of 2140
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 04:21:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014358.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014358hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 100.0 7.2E-53 1.6E-57 422.7 41.9 384 33-426 5-398 (557)
2 PRK15049 L-asparagine permease 100.0 1.6E-49 3.5E-54 395.0 40.5 346 55-423 24-387 (499)
3 PRK10249 phenylalanine transpo 100.0 3.3E-49 7.1E-54 390.0 39.7 345 53-422 15-375 (458)
4 PRK10238 aromatic amino acid t 100.0 1.6E-48 3.4E-53 385.0 40.5 346 53-423 6-367 (456)
5 PRK11387 S-methylmethionine tr 100.0 2.8E-48 6.1E-53 385.3 40.3 326 55-405 10-352 (471)
6 COG0833 LysP Amino acid transp 100.0 2.5E-49 5.4E-54 375.1 30.7 345 56-424 41-410 (541)
7 PRK10746 putative transport pr 100.0 3.7E-48 8.1E-53 382.2 39.9 346 53-423 4-369 (461)
8 TIGR01773 GABAperm gamma-amino 100.0 9.7E-48 2.1E-52 380.2 39.1 344 54-422 7-368 (452)
9 TIGR00909 2A0306 amino acid tr 100.0 1.8E-47 4E-52 376.5 39.0 361 57-425 1-362 (429)
10 PRK10435 cadB lysine/cadaverin 100.0 1.9E-47 4.1E-52 375.6 38.5 346 56-424 2-361 (435)
11 PRK10836 lysine transporter; P 100.0 2.5E-47 5.5E-52 379.9 39.5 347 51-422 7-379 (489)
12 PRK10644 arginine:agmatin anti 100.0 2.7E-47 5.9E-52 376.0 38.4 333 54-408 3-340 (445)
13 PRK11357 frlA putative fructos 100.0 9.2E-47 2E-51 372.5 38.5 347 54-422 3-361 (445)
14 PRK10655 potE putrescine trans 100.0 8E-47 1.7E-51 372.4 37.7 345 56-422 3-356 (438)
15 PRK10580 proY putative proline 100.0 2.7E-46 5.8E-51 370.0 40.8 345 53-422 3-365 (457)
16 KOG1289 Amino acid transporter 100.0 1.1E-47 2.4E-52 362.9 28.1 359 50-424 39-426 (550)
17 PRK11049 D-alanine/D-serine/gl 100.0 4.1E-46 9E-51 369.3 40.5 326 54-404 15-356 (469)
18 PRK11021 putative transporter; 100.0 1E-45 2.3E-50 361.2 40.8 339 61-424 1-347 (410)
19 TIGR00905 2A0302 transporter, 100.0 3.7E-46 8.1E-51 370.3 38.1 346 56-420 4-362 (473)
20 TIGR00908 2A0305 ethanolamine 100.0 7.1E-46 1.5E-50 366.1 39.8 347 53-425 1-359 (442)
21 TIGR00911 2A0308 L-type amino 100.0 5E-46 1.1E-50 372.2 38.1 350 53-421 36-397 (501)
22 KOG1286 Amino acid transporter 100.0 1.1E-47 2.3E-52 377.2 25.4 354 54-426 25-410 (554)
23 TIGR03428 ureacarb_perm permea 100.0 1.5E-45 3.2E-50 366.2 39.1 365 51-424 5-384 (475)
24 COG1113 AnsP Gamma-aminobutyra 100.0 2.3E-46 5E-51 347.9 29.3 346 53-423 7-370 (462)
25 KOG1287 Amino acid transporter 100.0 2.1E-46 4.5E-51 354.2 29.1 350 53-422 6-367 (479)
26 PRK10197 gamma-aminobutyrate t 100.0 2.7E-45 5.8E-50 361.0 37.0 315 69-408 2-331 (446)
27 TIGR00913 2A0310 amino acid pe 100.0 7.4E-45 1.6E-49 362.3 38.6 340 58-421 1-371 (478)
28 TIGR03810 arg_ornith_anti argi 100.0 1.3E-44 2.9E-49 358.7 38.5 344 59-422 1-360 (468)
29 TIGR00930 2a30 K-Cl cotranspor 100.0 5.6E-44 1.2E-48 373.1 37.0 358 55-426 72-473 (953)
30 TIGR00907 2A0304 amino acid pe 100.0 2.8E-43 6E-48 351.2 38.0 359 51-423 4-390 (482)
31 PF13520 AA_permease_2: Amino 100.0 4.3E-41 9.4E-46 331.2 33.3 325 61-408 1-338 (426)
32 COG0531 PotE Amino acid transp 100.0 7.5E-40 1.6E-44 326.4 38.1 335 53-405 6-350 (466)
33 PF00324 AA_permease: Amino ac 100.0 4.7E-42 1E-46 342.0 7.1 326 66-409 2-356 (478)
34 TIGR03813 put_Glu_GABA_T putat 100.0 6.8E-38 1.5E-42 311.4 36.6 345 59-422 1-365 (474)
35 TIGR00910 2A0307_GadC glutamat 100.0 1.2E-36 2.5E-41 303.2 36.6 330 57-408 2-348 (507)
36 PRK15238 inner membrane transp 100.0 1E-35 2.3E-40 297.0 39.4 339 56-408 4-382 (496)
37 TIGR00837 araaP aromatic amino 100.0 9.9E-27 2.1E-31 225.5 28.4 324 68-421 4-338 (381)
38 KOG2082 K+/Cl- cotransporter K 100.0 9.7E-28 2.1E-32 231.0 19.3 359 60-426 114-581 (1075)
39 KOG1288 Amino acid transporter 100.0 8E-28 1.7E-32 230.0 18.3 354 60-426 66-458 (945)
40 TIGR00912 2A0309 spore germina 99.9 6.3E-24 1.4E-28 204.2 32.6 288 59-371 1-295 (359)
41 PHA02764 hypothetical protein; 99.9 2E-20 4.4E-25 164.9 24.1 275 52-392 5-285 (399)
42 TIGR00814 stp serine transport 99.9 1.9E-19 4.1E-24 172.8 30.1 286 66-374 8-313 (397)
43 KOG2083 Na+/K+ symporter [Inor 99.8 2.9E-20 6.2E-25 177.2 13.8 347 58-425 27-401 (643)
44 PF03845 Spore_permease: Spore 99.8 2.2E-17 4.8E-22 156.0 33.5 286 60-371 1-291 (320)
45 TIGR00796 livcs branched-chain 99.8 3.9E-16 8.4E-21 147.9 32.8 304 71-417 5-330 (378)
46 PF03222 Trp_Tyr_perm: Tryptop 99.8 1.3E-15 2.8E-20 146.7 35.0 293 59-371 1-304 (394)
47 PRK10483 tryptophan permease; 99.7 8.7E-15 1.9E-19 139.7 29.6 297 56-373 6-314 (414)
48 PRK15132 tyrosine transporter 99.7 1.8E-14 3.8E-19 138.2 30.8 291 62-373 4-303 (403)
49 PRK09664 tryptophan permease T 99.7 5.3E-14 1.1E-18 134.2 30.1 291 62-372 10-314 (415)
50 PRK13629 threonine/serine tran 99.7 1.6E-13 3.4E-18 131.1 31.3 287 68-374 26-348 (443)
51 COG0814 SdaC Amino acid permea 99.7 2.1E-13 4.6E-18 132.3 32.2 295 56-369 4-312 (415)
52 PF01235 Na_Ala_symp: Sodium:a 99.5 1.4E-11 2.9E-16 117.4 28.8 291 57-372 15-338 (416)
53 TIGR00835 agcS amino acid carr 99.5 3.7E-10 8E-15 108.3 32.6 287 59-373 45-366 (425)
54 COG1115 AlsT Na+/alanine sympo 99.5 1.2E-10 2.7E-15 109.5 28.7 292 56-373 58-383 (452)
55 KOG1303 Amino acid transporter 99.2 8.8E-09 1.9E-13 99.6 25.8 281 54-360 31-323 (437)
56 PLN03074 auxin influx permease 99.2 3.5E-08 7.6E-13 97.5 29.9 244 53-321 38-294 (473)
57 KOG1304 Amino acid transporter 99.2 3.9E-08 8.5E-13 93.9 27.1 287 55-371 41-349 (449)
58 PTZ00206 amino acid transporte 99.2 1.2E-07 2.7E-12 94.0 31.5 245 62-321 61-319 (467)
59 COG3949 Uncharacterized membra 99.1 2.3E-07 5.1E-12 84.0 28.4 268 66-366 8-283 (349)
60 PRK11375 allantoin permease; P 99.1 1.2E-06 2.7E-11 87.1 34.1 333 52-409 18-365 (484)
61 TIGR00800 ncs1 NCS1 nucleoside 98.8 6.4E-05 1.4E-09 74.4 34.3 242 53-311 6-259 (442)
62 COG1953 FUI1 Cytosine/uracil/t 98.7 6.2E-05 1.4E-09 72.8 31.0 295 52-359 32-341 (497)
63 COG1457 CodB Purine-cytosine p 98.7 5E-05 1.1E-09 73.2 29.9 242 94-371 54-300 (442)
64 TIGR02119 panF sodium/pantothe 98.7 0.00018 3.9E-09 71.9 34.5 284 58-367 39-345 (471)
65 PRK09442 panF sodium/panthothe 98.7 0.00022 4.8E-09 71.4 34.8 283 58-367 40-346 (483)
66 PRK11017 codB cytosine permeas 98.7 0.00028 6.2E-09 68.8 34.6 218 56-302 6-226 (404)
67 TIGR00813 sss transporter, SSS 98.7 0.00014 3E-09 71.3 32.6 285 58-368 2-322 (407)
68 PF01490 Aa_trans: Transmembra 98.5 3.5E-09 7.5E-14 103.9 -4.6 289 59-373 1-303 (409)
69 PF00474 SSF: Sodium:solute sy 98.5 2E-05 4.3E-10 77.3 20.5 285 58-368 5-320 (406)
70 TIGR02121 Na_Pro_sym sodium/pr 98.5 0.0016 3.5E-08 65.4 34.2 285 58-368 35-346 (487)
71 PF05525 Branch_AA_trans: Bran 98.4 0.001 2.2E-08 64.4 30.3 276 71-371 13-305 (427)
72 COG0733 Na+-dependent transpor 98.4 0.001 2.2E-08 63.7 29.8 293 62-363 10-326 (439)
73 TIGR02711 symport_actP cation/ 98.4 0.0017 3.7E-08 66.0 33.0 156 58-239 66-223 (549)
74 PRK12488 acetate permease; Pro 98.4 0.0022 4.9E-08 65.2 33.4 157 58-240 66-224 (549)
75 PRK09395 actP acetate permease 98.4 0.0046 1E-07 63.0 34.6 157 57-239 67-225 (551)
76 TIGR02358 thia_cytX probable h 98.3 0.0042 9.2E-08 60.2 34.2 245 93-372 30-276 (386)
77 COG0591 PutP Na+/proline sympo 98.3 0.0056 1.2E-07 61.4 32.7 281 57-368 36-353 (493)
78 TIGR03648 Na_symport_lg probab 98.2 0.0051 1.1E-07 62.7 31.9 150 58-235 31-184 (552)
79 PRK15419 proline:sodium sympor 98.2 0.0088 1.9E-07 60.3 34.4 158 58-239 39-203 (502)
80 PRK10484 putative transporter; 98.1 0.011 2.3E-07 60.0 31.7 291 58-367 37-354 (523)
81 COG1114 BrnQ Branched-chain am 98.0 0.013 2.7E-07 55.7 28.5 275 68-370 12-306 (431)
82 PF01566 Nramp: Natural resist 98.0 0.0086 1.9E-07 57.6 27.0 256 90-373 11-286 (358)
83 PRK15433 branched-chain amino 98.0 0.014 3.1E-07 56.6 27.8 272 72-371 19-309 (439)
84 PRK00701 manganese transport p 97.9 0.025 5.5E-07 55.7 28.9 89 75-167 48-137 (439)
85 PF02028 BCCT: BCCT family tra 97.9 0.038 8.2E-07 54.8 33.0 338 57-422 71-464 (485)
86 KOG2466 Uridine permease/thiam 97.8 0.0035 7.6E-08 60.1 19.0 307 53-383 48-381 (572)
87 PF02133 Transp_cyt_pur: Perme 97.8 0.0023 5E-08 63.4 18.8 242 56-309 4-251 (440)
88 KOG1305 Amino acid transporter 97.7 0.0071 1.5E-07 58.7 20.2 250 58-323 3-259 (411)
89 COG1914 MntH Mn2+ and Fe2+ tra 97.2 0.27 5.8E-06 47.8 30.8 281 59-370 15-315 (416)
90 PRK09928 choline transport pro 97.1 0.45 9.8E-06 48.9 28.0 77 341-421 407-483 (679)
91 PRK09950 putative transporter; 96.9 0.53 1.1E-05 47.0 28.9 25 58-82 81-105 (506)
92 COG4147 DhlC Predicted symport 96.9 0.46 9.9E-06 46.2 26.9 190 94-315 79-292 (529)
93 COG1292 BetT Choline-glycine b 96.7 0.78 1.7E-05 45.4 23.9 33 137-169 187-219 (537)
94 PLN00151 potassium transporter 96.6 0.46 1E-05 49.4 20.7 213 198-423 275-504 (852)
95 KOG4303 Vesicular inhibitory a 96.6 0.0095 2.1E-07 54.7 7.7 286 55-369 111-405 (524)
96 TIGR00842 bcct choline/carniti 96.0 1.8 4E-05 42.6 28.1 25 58-82 34-58 (453)
97 PLN00150 potassium ion transpo 96.0 0.78 1.7E-05 47.7 18.5 211 198-422 215-443 (779)
98 PF02705 K_trans: K+ potassium 95.9 2.1 4.6E-05 42.9 23.2 213 198-423 133-361 (534)
99 PRK03356 L-carnitine/gamma-but 95.7 2.6 5.7E-05 42.1 29.7 25 58-82 83-107 (504)
100 TIGR01197 nramp NRAMP (natural 95.6 2.3 5.1E-05 41.2 29.9 42 330-371 283-324 (390)
101 PLN00149 potassium transporter 95.4 4.2 9E-05 42.6 22.8 214 199-422 200-430 (779)
102 COG4145 PanF Na+/panthothenate 94.2 5.2 0.00011 37.9 26.7 217 125-366 107-343 (473)
103 PF00209 SNF: Sodium:neurotran 94.2 7.4 0.00016 39.5 27.0 101 208-311 191-301 (523)
104 KOG3660 Sodium-neurotransmitte 93.5 2.3 5E-05 43.7 14.4 179 62-243 39-262 (629)
105 PLN00148 potassium transporter 92.0 7.8 0.00017 40.6 15.9 212 198-422 198-426 (785)
106 PRK10745 trkD potassium transp 91.5 18 0.0004 37.0 20.5 212 198-422 144-371 (622)
107 TIGR00794 kup potassium uptake 90.9 19 0.00041 37.5 17.2 213 198-423 169-398 (688)
108 PF02554 CstA: Carbon starvati 89.6 19 0.00042 34.3 22.5 102 61-163 52-153 (376)
109 KOG2349 Na+:iodide/myo-inosito 88.6 10 0.00022 38.5 13.1 223 124-370 108-362 (585)
110 KOG3659 Sodium-neurotransmitte 81.5 65 0.0014 32.8 21.0 119 195-314 252-378 (629)
111 COG4146 Predicted symporter [G 77.0 71 0.0015 30.6 20.6 50 125-174 104-154 (571)
112 PTZ00206 amino acid transporte 75.1 44 0.00095 33.4 11.8 55 328-382 122-176 (467)
113 COG1966 CstA Carbon starvation 65.0 1.6E+02 0.0036 29.8 21.4 100 63-164 54-154 (575)
114 PRK00968 tetrahydromethanopter 62.1 11 0.00025 32.4 3.8 33 282-314 204-237 (240)
115 PRK15433 branched-chain amino 55.7 2.2E+02 0.0047 28.2 14.5 92 128-243 269-360 (439)
116 COG3158 Kup K+ transporter [In 53.4 2.6E+02 0.0057 28.5 14.1 95 198-297 149-253 (627)
117 COG4060 MtrD Tetrahydromethano 47.7 26 0.00056 29.2 3.6 33 282-314 194-227 (230)
118 TIGR02230 ATPase_gene1 F0F1-AT 43.1 1E+02 0.0022 23.5 5.8 30 54-83 35-64 (100)
119 PF11998 DUF3493: Protein of u 40.6 1.3E+02 0.0029 21.4 6.8 42 276-317 4-45 (75)
120 PF05525 Branch_AA_trans: Bran 38.1 4.1E+02 0.0089 26.3 15.5 94 127-243 264-357 (427)
121 KOG4753 Predicted membrane pro 34.6 18 0.00039 28.1 0.7 53 55-108 45-98 (124)
122 PF11174 DUF2970: Protein of u 34.3 1.2E+02 0.0025 20.3 4.5 43 263-308 3-45 (56)
123 PF03806 ABG_transport: AbgT p 33.9 5.1E+02 0.011 26.2 12.3 58 265-324 302-361 (502)
124 PF01080 Presenilin: Presenili 31.0 1.2E+02 0.0026 29.6 5.7 11 60-70 327-337 (403)
125 PF03596 Cad: Cadmium resistan 30.7 2.3E+02 0.0049 24.5 6.9 58 62-121 97-154 (191)
126 KOG2736 Presenilin [Signal tra 29.6 2.2E+02 0.0048 27.2 7.0 6 126-131 383-388 (406)
127 PF12666 PrgI: PrgI family pro 29.3 1.8E+02 0.004 21.4 5.5 34 54-87 10-43 (93)
128 KOG1289 Amino acid transporter 29.3 6.3E+02 0.014 25.8 16.0 73 94-167 293-368 (550)
129 TIGR00796 livcs branched-chain 27.4 5.8E+02 0.013 24.7 15.8 79 128-229 259-337 (378)
130 PF03222 Trp_Tyr_perm: Tryptop 27.3 5.9E+02 0.013 24.8 11.6 81 292-372 29-110 (394)
131 PF11947 DUF3464: Protein of u 23.4 2.2E+02 0.0047 23.6 5.2 63 68-130 68-135 (153)
132 PF04120 Iron_permease: Low af 22.6 3.2E+02 0.007 22.0 5.9 30 126-155 4-33 (132)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=7.2e-53 Score=422.67 Aligned_cols=384 Identities=39% Similarity=0.710 Sum_probs=330.6
Q ss_pred HHHhhhhhcccCCCccccCCCCCCcccccChHHHHHHHhhhhhcchhhhchHHhh-hhcCchHHHHHHHHHHHHHHHHHH
Q 014358 33 HFWSSALRAKTLTAPSVRTNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVA-RDAGPGVTISFLLAGAASVLNALC 111 (426)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~-~~~G~~~~~~~il~~~~~~~~~~~ 111 (426)
++.++..|+++.++++ +++++++|+++.+|+++++++.++|+|+|..++... ..+||..+++|+++++.+++.+++
T Consensus 5 ~~~~~~~r~k~~~~~~---~~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~ 81 (557)
T TIGR00906 5 TFARCLIRRKIVDLDS---REESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFC 81 (557)
T ss_pred HHHHHHhccCCccccc---ccccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHH
Confidence 4455566655554321 235579999999999999999999999999999876 578999999999999999999999
Q ss_pred HHHHHhhCCCCCCchhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccccCCCccccCCCccc
Q 014358 112 YAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILEL-FPFFKENIPSWIGHGGEEF 190 (426)
Q Consensus 112 ~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 190 (426)
++|+++++|+ +||.|+|.++.+||.+||++||.+++.|....+..+..++.|+..++.. ..... .+.. ... ...
T Consensus 82 yaElas~~P~-sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~--~~~~-~~~-~~~ 156 (557)
T TIGR00906 82 YAEFGARVPK-AGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFR--RTYF-KLN-YDG 156 (557)
T ss_pred HHHHHHhCCC-CCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--cccc-ccc-CCc
Confidence 9999999999 9999999999999999999999999999999999999999998886541 11000 0000 000 000
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCC--------CCCCCchHHHH
Q 014358 191 LGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS--------PFAPNGFKEIL 262 (426)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~~ 262 (426)
.. ....+++++++++.+.+|.+|+|..+|++.++..++++.++++++.++...+.+||. ++.|.++.+++
T Consensus 157 l~--~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l 234 (557)
T TIGR00906 157 LA--EYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVL 234 (557)
T ss_pred cc--ccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHH
Confidence 00 112456677778888999999999999999999999999998888888777767776 67777888999
Q ss_pred HHHHHHHHHhhhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHH
Q 014358 263 TGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVS 342 (426)
Q Consensus 263 ~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (426)
.++..++|+|.|+|.+++++||+|||+|++||++..++.+++++|++..++.....|+++++.++|+..+++..+.++..
T Consensus 235 ~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~ 314 (557)
T TIGR00906 235 SGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAK 314 (557)
T ss_pred HHHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888888999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhhCHHHHHHHHHHHH
Q 014358 343 VLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGT 422 (426)
Q Consensus 343 ~~~~~~~~~s~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 422 (426)
.++.+..+++.+++.++.+++.+|++++|||||.+|++|+|+|+|+++|++|+++..+++.++.++.+.+.+.++.++++
T Consensus 315 ~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ 394 (557)
T TIGR00906 315 YIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGT 394 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999998899999999999999988888889999999999988
Q ss_pred HhcC
Q 014358 423 LLVL 426 (426)
Q Consensus 423 l~~~ 426 (426)
+++|
T Consensus 395 ll~y 398 (557)
T TIGR00906 395 LLAY 398 (557)
T ss_pred HHHH
Confidence 8764
No 2
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=1.6e-49 Score=394.98 Aligned_cols=346 Identities=22% Similarity=0.378 Sum_probs=290.3
Q ss_pred CCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHh
Q 014358 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (426)
Q Consensus 55 ~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~ 134 (426)
++++|+++.+|..++++|+++|+|+|..++..++.+||..+++|++++++.++.+.+++||++++|+ +||.|+|+++.+
T Consensus 24 ~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~-aGg~y~y~~~~~ 102 (499)
T PRK15049 24 EGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPS-SGSFVSYAREFL 102 (499)
T ss_pred hhhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHh
Confidence 3589999999999999999999999999999999999998899999999999999999999999999 999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHh
Q 014358 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (426)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (426)
||..||++||.+|+.|....+......+.++..+ +.+ ...|. .++..+++++++.+|++
T Consensus 103 G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~----~~~-~~~~~----------------~~~~~~~~~l~~~iN~~ 161 (499)
T PRK15049 103 GEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW----GAF-GGVPQ----------------WVFALAALTIVGTMNMI 161 (499)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccC-CCCcH----------------HHHHHHHHHHHHHHHHH
Confidence 9999999999999999876666555555555431 111 01232 24567778889999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhccc---ccc-----cCC------CCCCCCchHHHHHHHHHHHHHhhhHHHHhh
Q 014358 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFE---VDV-----SNW------SPFAPNGFKEILTGATVVFFAYVGFDAVAN 280 (426)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~---~~~-----~~~------~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~ 280 (426)
|+|..++++.++.++|++.++.+++.++.. .+. .++ .++.|+++.+++.++..+.|+|.|+|.+++
T Consensus 162 gvk~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~ 241 (499)
T PRK15049 162 GVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGT 241 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999988877766554331 110 011 134466777778888899999999999999
Q ss_pred hhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Q 014358 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLV 359 (426)
Q Consensus 281 ~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 359 (426)
++||+|||+|++||++..++..+.++|++..+......|.+++.. ++|+.+++++.+.++...++.+.++++.+++.++
T Consensus 242 ~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns 321 (499)
T PRK15049 242 AAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNS 321 (499)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888754 5799999999998988999999999999999999
Q ss_pred HHHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhh---hCHHHHHHHHHHHHH
Q 014358 360 GLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL---FNVRVLSHILSVGTL 423 (426)
Q Consensus 360 ~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~l 423 (426)
.++++||++++|||||.+|++|+|+|| +++|++|++++.++.++..++ .+.+.++.+.++++.
T Consensus 322 ~~~~~sR~l~a~Ardg~lP~~f~kv~k-~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~ 387 (499)
T PRK15049 322 GLYCTGRILRSMAMGGSAPSFMAKMSR-QHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASL 387 (499)
T ss_pred HHHHHHHHHHHHHhcCCcCHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 999999999999999999999999996 599999999998886543222 244555555555543
No 3
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=3.3e-49 Score=390.05 Aligned_cols=345 Identities=20% Similarity=0.374 Sum_probs=296.5
Q ss_pred CCCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHH
Q 014358 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (426)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~ 132 (426)
++++++|+++.+|+.++++|+++|+|+|..++..++.+||..+++|++++++.++.+++++|+++++|+ +||.|.|++|
T Consensus 15 ~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~-~Gg~~~y~~~ 93 (458)
T PRK10249 15 QEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPV-SGSFAHFAYK 93 (458)
T ss_pred CchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHH
Confidence 445799999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHH
Q 014358 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (426)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (426)
.+||.+||+.||.+|+++....+.+....+.++..++ | +.+. .++..+++++...+|
T Consensus 94 ~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~---~----~~~~----------------~~~~~~~~~l~~~lN 150 (458)
T PRK10249 94 YWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWF---P----DVPT----------------WIWAAAFFIIINAVN 150 (458)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---C----cCcH----------------HHHHHHHHHHHHHHH
Confidence 9999999999999999998887777777777776632 2 2222 345677788889999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhhhccc---cc------ccC-CC--CCCCCchHHHHHHHHHHHHHhhhHHHHhh
Q 014358 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE---VD------VSN-WS--PFAPNGFKEILTGATVVFFAYVGFDAVAN 280 (426)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~---~~------~~~-~~--~~~~~~~~~~~~~~~~~~~~~~G~e~~~~ 280 (426)
++|+|..+|++.++..+|++.++.+++.++.. .+ .++ ++ ++.|+++.+++.++....|+|.|+|.+++
T Consensus 151 ~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~ 230 (458)
T PRK10249 151 LVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGI 230 (458)
T ss_pred HhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHH
Confidence 99999999999999999987776665544321 11 111 11 23457788899999999999999999999
Q ss_pred hhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Q 014358 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLV 359 (426)
Q Consensus 281 ~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 359 (426)
++||+|||+|++||++..+.....++|++..+......|++++.. ++|+.+++++.++++...++.+.++++.+++.++
T Consensus 231 ~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 310 (458)
T PRK10249 231 TAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNS 310 (458)
T ss_pred HHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888888887654 4799999988888888888899999999999999
Q ss_pred HHHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhh---CHHHHHHHHHHHH
Q 014358 360 GLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF---NVRVLSHILSVGT 422 (426)
Q Consensus 360 ~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 422 (426)
.+++.||+++++||||.+|++|+|+||+ ++|++|++++.+++.++.++. +.+.++.+.++++
T Consensus 311 ~~~~~sR~l~a~ardg~lP~~~~kv~~~-~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~ 375 (458)
T PRK10249 311 GVYSNSRMLFGLSVQGNAPKFLTRVSRR-GVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVV 375 (458)
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 9999999999999999999999999975 999999999999987766553 4456666666543
No 4
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=1.6e-48 Score=384.99 Aligned_cols=346 Identities=22% Similarity=0.425 Sum_probs=297.5
Q ss_pred CCCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHH
Q 014358 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (426)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~ 132 (426)
.++++||+++.+|..++++++++|+|+|..++..++.+||..+++|++++++.++++++++|+++++|. +||.|+|++|
T Consensus 6 ~~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~-aGg~y~~~~~ 84 (456)
T PRK10238 6 HGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPV-AGSFSHFAYK 84 (456)
T ss_pred cchhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHH
Confidence 445699999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHH
Q 014358 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (426)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (426)
.+||..||+.||.++++|....+......+++++.+. | +.+.| ....+++++.+.+|
T Consensus 85 ~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~---p----~~~~~----------------~~~~i~~~~~~~lN 141 (456)
T PRK10238 85 YWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWY---P----EIPTW----------------VSAAVFFVVINAIN 141 (456)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C----cCcHH----------------HHHHHHHHHHHHHH
Confidence 9999999999999999999999988888888887632 2 23332 34566677889999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc--cc----c---ccC-C--CCCCCCchHHHHHHHHHHHHHhhhHHHHhh
Q 014358 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAF--EV----D---VSN-W--SPFAPNGFKEILTGATVVFFAYVGFDAVAN 280 (426)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~--~~----~---~~~-~--~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~ 280 (426)
++|+|..++++.+...+|++.++.+++.++. .. + ..+ + .++.|+++.++..++..+.|+|.|+|.+++
T Consensus 142 ~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~ 221 (456)
T PRK10238 142 LTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGI 221 (456)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999999887766553321 11 0 111 1 124466777888888899999999999999
Q ss_pred hhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Q 014358 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLV 359 (426)
Q Consensus 281 ~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 359 (426)
++||+|||+|++||++..++....++|+..........|.+++.. ++|+.+++++.+.+....++.+.++++.+++.++
T Consensus 222 ~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~ 301 (456)
T PRK10238 222 TAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNS 301 (456)
T ss_pred HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888777788887753 5799999988888888889999999999999999
Q ss_pred HHHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhh---CHHHHHHHHHHHHH
Q 014358 360 GLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF---NVRVLSHILSVGTL 423 (426)
Q Consensus 360 ~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~l 423 (426)
.+++.||++++|||||.+|++|+|+||+ ++|++|++++.+++.+..++. +.+.++.+.++++.
T Consensus 302 ~~~~~sR~l~a~ardg~lP~~f~kv~~~-~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~ 367 (456)
T PRK10238 302 CVYCNSRMLFGLAQQGNAPKALASVDKR-GVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVS 367 (456)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHhhCcC-CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 9999999999999999999999999975 999999999999987766652 55667777776553
No 5
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=2.8e-48 Score=385.28 Aligned_cols=326 Identities=22% Similarity=0.408 Sum_probs=279.5
Q ss_pred CCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHH
Q 014358 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (426)
Q Consensus 55 ~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~-~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~ 133 (426)
++++|+++.++..+++++.++|+|+|..++..++.+|| +.+++|++++++.++.+++++||++++|+ +||.|.|+++.
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~-aGG~y~y~~~~ 88 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPE-TGAFHVYAARY 88 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHh
Confidence 46899999999999999999999999999999999998 48999999999999999999999999999 99999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHH
Q 014358 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (426)
Q Consensus 134 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (426)
+||.+||..||.+|++|....+........+++. .+| +.+.| ....++.++++.+|+
T Consensus 89 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~---~~p----~~~~~----------------~~~~~~~~~~~~in~ 145 (471)
T PRK11387 89 LGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQY---WFP----QVPVW----------------PWCLLFCALIFGLNV 145 (471)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccC----cCcHH----------------HHHHHHHHHHHHHHH
Confidence 9999999999999999998887776666655544 222 22222 234455567889999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-------c------ccCC--CCCCCCchHHHHHHHHHHHHHhhhHHHH
Q 014358 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-------D------VSNW--SPFAPNGFKEILTGATVVFFAYVGFDAV 278 (426)
Q Consensus 214 ~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-------~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~G~e~~ 278 (426)
+|+|..++++.....+|++.++.+++.++... + .+++ .++.|++..+++.++..+.|+|.|+|.+
T Consensus 146 ~gvk~~~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~ 225 (471)
T PRK11387 146 VSTRFFAEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELI 225 (471)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHH
Confidence 99999999999999999988876666543210 0 0111 1233556667889999999999999999
Q ss_pred hhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 014358 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (426)
Q Consensus 279 ~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (426)
++++||+|||+|++||++..++.++.++|++..++.....|.++.. .++|+.+++++.+++++..++.+.++++.+++.
T Consensus 226 ~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~ 305 (471)
T PRK11387 226 GIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAA 305 (471)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888887765 457999999999989999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHH
Q 014358 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGIL 405 (426)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~ 405 (426)
++.+++.||++++|||||.+|++|+|+||+ ++|++|++++.++.++.
T Consensus 306 ~~~~~~~sR~l~a~ardg~lP~~f~~~~~~-~~P~~Ail~~~~~~~l~ 352 (471)
T PRK11387 306 NSGLYASGRMLWSLSNEGTLPACFARLTKR-GIPLTALSVSMLGGLLA 352 (471)
T ss_pred HHHHHHhhHHHHHHHhcCCcCHHHHHhCCC-CCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999975 99999999887665443
No 6
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-49 Score=375.14 Aligned_cols=345 Identities=22% Similarity=0.351 Sum_probs=308.6
Q ss_pred CcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHh
Q 014358 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (426)
Q Consensus 56 ~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~ 134 (426)
++||+|..+|+.++++|++||+|+|+..+..+..+||+ .+++|++.+++..++..+++||+..+|. +|++..|++|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~-sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPV-SGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCchhhhhhhhc
Confidence 69999999999999999999999999999999999996 9999999999999999999999999998 999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHh
Q 014358 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (426)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (426)
+|-+||..||.||+.|....+.+..+.+..++.+.. +..|. .++..++++++..+|..
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p------~~v~~----------------~~w~~iF~~~i~~iN~~ 177 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFP------DTVPP----------------WIWIAIFLVLIFLLNLF 177 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcC------CCCCh----------------HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998888542 11233 45677888999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhcccc----------cccCCC--CCCCCchHHHHHHHHHHHHHhhhHHHHhhhh
Q 014358 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEV----------DVSNWS--PFAPNGFKEILTGATVVFFAYVGFDAVANSA 282 (426)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~ 282 (426)
++|.++..+..+..+|++.++.+++.++... ....|. ..+++|+.++...+..+.|+|.|.|.+...+
T Consensus 178 ~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaA 257 (541)
T COG0833 178 GVKGFGETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAA 257 (541)
T ss_pred cccccceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeee
Confidence 9999999999999999999999988776521 122333 2457889999999999999999999999999
Q ss_pred hhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC---------CCChHHHHHHHcChhHHHHHHHHHHHHHH
Q 014358 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD---------EDAPLSDAFASRGLKYVSVLISFGAVAGL 353 (426)
Q Consensus 283 ~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 353 (426)
+|.|||+|++|||+...+..+.++|++..+.+...+|++|.. ..+|+..++++.|.+.++.+++..++.++
T Consensus 258 gEs~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~sv 337 (541)
T COG0833 258 GESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSV 337 (541)
T ss_pred cccCCchhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998833 24699999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhh---CHHHHHHHHHHHHHh
Q 014358 354 TTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF---NVRVLSHILSVGTLL 424 (426)
Q Consensus 354 ~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~l~ 424 (426)
++++|+.+|++||++|+||+||..||.|+|+||+ |+|.+|++++.+++++-.+-. +.+.++.+.+++.+.
T Consensus 338 lSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~-GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s 410 (541)
T COG0833 338 LSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRR-GVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLS 410 (541)
T ss_pred HHHhhccchHHHHHHHHHHhcCCCchHHHhhCCC-CCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999996 999999999998875443333 334677777776654
No 7
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=3.7e-48 Score=382.21 Aligned_cols=346 Identities=24% Similarity=0.356 Sum_probs=293.9
Q ss_pred CCCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHH
Q 014358 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (426)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~ 132 (426)
.++++||+++.+|..++++|+++|+|+|..++..++.+||..+++|++++++.++++.+++||++++|+ +||.|+|++|
T Consensus 4 ~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~-sGg~~~y~~~ 82 (461)
T PRK10746 4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPV-TGSFAVYAHR 82 (461)
T ss_pred CchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHH
Confidence 455799999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHH
Q 014358 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (426)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (426)
.+||.+||.+||.+|+.|....+.+....+.+++.++ | ..+.| ....+++++.+.+|
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~---p----~~~~~----------------~~~~~~~~~~~~lN 139 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWF---P----EMAQW----------------IPALIAVALVALAN 139 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---C----CCchH----------------HHHHHHHHHHHHHH
Confidence 9999999999999999999888888888888877632 2 22332 34556677888899
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhhhccc-----c------cccCCCC---CCCCchHHHHHHHHHHHHHhhhHHHH
Q 014358 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE-----V------DVSNWSP---FAPNGFKEILTGATVVFFAYVGFDAV 278 (426)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~-----~------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~G~e~~ 278 (426)
++|+|..++++.....+|++.++++++.++.. . +.+|+.+ +.++++.++..++..+.|+|.|+|.+
T Consensus 140 ~~gv~~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v 219 (461)
T PRK10746 140 LAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELI 219 (461)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999988777766544321 0 1234432 44667889999999999999999999
Q ss_pred hhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 014358 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (426)
Q Consensus 279 ~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (426)
++.+||+|||+|++||++..++..+.++|++..++.....|.+++.. ++|+.+++++.+.+....++++.++++.+++.
T Consensus 220 ~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~ 299 (461)
T PRK10746 220 GITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGC 299 (461)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998764 56999999888888888889999999999999
Q ss_pred HHHHHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHh---hh-C-HHHHHHHHHHHHH
Q 014358 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAG---LF-N-VRVLSHILSVGTL 423 (426)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~---~~-~-~~~~~~l~~~~~l 423 (426)
++.+++.||++++|||||.+|++|+|+|| +|+|++|++++.+...+... +. + .+.++.+.+++++
T Consensus 300 n~~~~~~sR~l~~~a~~g~lP~~~~~~~~-~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~ 369 (461)
T PRK10746 300 NSGMYSCGRMLYALAKNRQLPAAMAKVSR-HGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVL 369 (461)
T ss_pred HHHHHHHHHHHHHHHhCCCcCHHHHHhCC-CCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 59999999987654432211 11 2 3345555555544
No 8
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=9.7e-48 Score=380.20 Aligned_cols=344 Identities=22% Similarity=0.360 Sum_probs=293.1
Q ss_pred CCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHH
Q 014358 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (426)
Q Consensus 54 ~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~ 133 (426)
+.+++|+|+.+|..+++++.++|+|+|..++..++.+||..+++|++++++.++.+++++||++++|+ +||.|.|+++.
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~-~Gg~~~~~~~~ 85 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPD-TGSFSTYADDA 85 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHH
Confidence 45689999999999999999999999999999999999998899999999999999999999999999 99999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHH
Q 014358 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (426)
Q Consensus 134 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (426)
+||.+||+.||.++++|....+........+++.++ | +.+. .++..+++++...+|+
T Consensus 86 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~~~----------------~~~~~~~~~~~~~~n~ 142 (452)
T TIGR01773 86 IGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWF---P----DIPL----------------WLFSLILTIVLTLTNL 142 (452)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C----cCcH----------------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888888887632 2 2232 3467777888899999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhccc---c----cc---cCC---CCCCCCchHHHHHHHHHHHHHhhhHHHHhh
Q 014358 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFE---V----DV---SNW---SPFAPNGFKEILTGATVVFFAYVGFDAVAN 280 (426)
Q Consensus 214 ~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~---~----~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~ 280 (426)
+|+|..++++.+...+|++.++.+++.++.. . +. .++ .++.|+++.+++.++..+.|+|.|+|.+++
T Consensus 143 ~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~ 222 (452)
T TIGR01773 143 YSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTI 222 (452)
T ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhH
Confidence 9999999999999999998877766554321 1 11 111 124466777899999999999999999999
Q ss_pred hhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC--CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHH
Q 014358 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD--EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLL 358 (426)
Q Consensus 281 ~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 358 (426)
++||+|||+|++||++..+.....++|++..+......|.++.. +..|+.++.+..+++....++.+.++++.+++.+
T Consensus 223 ~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~ 302 (452)
T TIGR01773 223 AAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLN 302 (452)
T ss_pred HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888877777766543 2348888888888888888888999999999999
Q ss_pred HHHHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhh---CHHHHHHHHHHHH
Q 014358 359 VGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF---NVRVLSHILSVGT 422 (426)
Q Consensus 359 ~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 422 (426)
+.+++.||++++|||||.+|++|+|+|| +++|++|++++.+++.+..++. +.+.++.+.+..+
T Consensus 303 ~~~~~~sR~~~a~ardg~lP~~~~~v~~-~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~ 368 (452)
T TIGR01773 303 SALYTTSRMLYSLAERGDAPRVFMKLNK-KGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSG 368 (452)
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHhhCC-CCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999996 5999999999998887765553 3344555554433
No 9
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=1.8e-47 Score=376.45 Aligned_cols=361 Identities=38% Similarity=0.644 Sum_probs=313.1
Q ss_pred cccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhch
Q 014358 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (426)
Q Consensus 57 l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~ 136 (426)
++|+++.++.+.+.++.++|+|++..++.....+|+..+++|++++++.++.+++++|+++++|+ +||.|+|.+|.+||
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPV-AGSPYTYAYEAMGE 79 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCcceeeHHHHhCc
Confidence 57999999999999999999999999999888889998999999999999999999999999999 99999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhh
Q 014358 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (426)
Q Consensus 137 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (426)
..|++.+|.+++.+....+.....+++++..++. ..+.+.|.+.... .++ .....+..++++++.+.+|++|+
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~-~~~~~~~~i~~~~~~~~l~~~g~ 152 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLP---GVGLDLPAVLTAK---PGN-GGVFNLPALLIVLFLTYILYLGA 152 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccccCchhhhcC---Ccc-cccccHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999888543 1111223221100 000 00112456778889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhhhhhhCCCCCChhHHH
Q 014358 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGI 296 (426)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai 296 (426)
|..+|++.+...++++.++.+++.++.+.+..++.++.|.++.++..++....|+|.|+|.+.+++||+|||+|++||++
T Consensus 153 ~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai 232 (429)
T TIGR00909 153 KESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAI 232 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHH
Confidence 99999999999999998888777777766777888777778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 014358 297 LGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDG 375 (426)
Q Consensus 297 ~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~a~d~ 375 (426)
..+..++.++|++..+......|.+++.+ +.|+..+.++.++++...++.+..+++.+++.++.+...+|+++++||||
T Consensus 233 ~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg 312 (429)
T TIGR00909 233 ILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDG 312 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999988888887654 46888888888888888899999999999999999999999999999999
Q ss_pred CCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhc
Q 014358 376 LLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLLV 425 (426)
Q Consensus 376 ~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~ 425 (426)
.+|++|+|+|+|+++|++|+++..+++.++.+..+.+.+.++.++..++.
T Consensus 313 ~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~ 362 (429)
T TIGR00909 313 LLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIA 362 (429)
T ss_pred CCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 99999999998899999999999999887776667777777777666554
No 10
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=1.9e-47 Score=375.61 Aligned_cols=346 Identities=21% Similarity=0.307 Sum_probs=290.0
Q ss_pred CcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhc
Q 014358 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (426)
Q Consensus 56 ~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g 135 (426)
+.+|+++.++...+.+++++|+|+|..++... .+|+.++++|+++++.+++.+++++||++++|+ +||.|+|++| +|
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a-~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~-~GG~y~y~~~-~g 78 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLA-SIGSIAIWGWIISIIGAMSLAYVYARLATKNPQ-QGGPIAYAGE-IS 78 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCChhHHHHH-HC
Confidence 46789999999999999999999999999865 478889999999999999999999999999999 9999999999 89
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhh
Q 014358 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (426)
Q Consensus 136 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (426)
|.+||.+||.||...+............|+... +|... .+ + ...++..+++++++++|.+|
T Consensus 79 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~---~p~~~--~~-~-------------~~~~~~~~i~~~~~~ln~~g 139 (435)
T PRK10435 79 PAFGFQTGVLYYHANWIGNLAIGITAVSYLSTF---FPVLN--DP-I-------------PAGIACIAIVWVFTFVNMLG 139 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccccC--Ch-H-------------HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999877777667767777787763 33221 11 1 11345667777889999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhccccccc----CCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhhhhhhCCCCCC
Q 014358 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS----NWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRD 291 (426)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~ 291 (426)
+|..++++.+..+++++.++.+.+.++.+.+.+ +|.+..+.++.+++.++..+.|+|.|+|.+++++||+|||+|+
T Consensus 140 vk~~~~i~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~ 219 (435)
T PRK10435 140 GTWVSRLTTIGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRT 219 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcccc
Confidence 999999999998888877766655554443332 3333334567789999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 292 LPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (426)
Q Consensus 292 ~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~ 370 (426)
+||++..+..++.++|++..+......|.+++. .++|+.+.+++.++++...++.+..+++++++.+++++..+|..++
T Consensus 220 iPrAi~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~ 299 (435)
T PRK10435 220 VPLATMLGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVR 299 (435)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998884 5679999988888888888888888999999999999999999999
Q ss_pred hHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhh----h-----CHHHHHHHHHHHHHh
Q 014358 371 LGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL----F-----NVRVLSHILSVGTLL 424 (426)
Q Consensus 371 ~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~----~-----~~~~~~~l~~~~~l~ 424 (426)
+||||.+||+|+|+|| +|+|.+|++++.+++.++... . ..+.++.+.+++++.
T Consensus 300 ~ardG~lP~~f~k~nk-~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 361 (435)
T PRK10435 300 AANDGNFPKVYGEVDK-NGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLL 361 (435)
T ss_pred HHhCCCccHHHHhhCc-CCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHH
Confidence 9999999999999997 599999999988877554322 1 134666677766654
No 11
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=2.5e-47 Score=379.90 Aligned_cols=347 Identities=24% Similarity=0.373 Sum_probs=283.0
Q ss_pred CCCCCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhH
Q 014358 51 TNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLY 129 (426)
Q Consensus 51 ~~~~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~ 129 (426)
..++++++|+++.++..++++|+++|+|+|..++..++.+||. .+++|+++++++++.+++++||++++|+ +||.|.|
T Consensus 7 ~~~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~-sGg~y~y 85 (489)
T PRK10836 7 TTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPV-SGSFATY 85 (489)
T ss_pred cCCcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHH
Confidence 3455679999999999999999999999999999999999996 8999999999999999999999999999 9999999
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHH
Q 014358 130 AYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (426)
Q Consensus 130 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (426)
+++.+||.+||+.||.+++.+....+........++.. .++ ..+. .....++++++.
T Consensus 86 ~~~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~---~~~----~~~~----------------~~~~~~~~~~~~ 142 (489)
T PRK10836 86 GQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSW---WFP----DTPG----------------WIWSALFLGVIF 142 (489)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCC----CCch----------------HHHHHHHHHHHH
Confidence 99999999999999999998776655444333333333 111 2222 233556666778
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccc------c----cccCCCC---CCCCchHHHHHHHHHHHHHhhhHH
Q 014358 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE------V----DVSNWSP---FAPNGFKEILTGATVVFFAYVGFD 276 (426)
Q Consensus 210 ~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~------~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~G~e 276 (426)
.+|++|+|..++++.++...|+..++.+++.++.. . +.+++.+ ..++++.+++.++....|+|.|+|
T Consensus 143 ~lN~~gv~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e 222 (489)
T PRK10836 143 LLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTE 222 (489)
T ss_pred HHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHH
Confidence 99999999999999999999988777665543321 1 1223321 113456666666667789999999
Q ss_pred HHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC---------CCChHHHHHHHcChhHHHHHHHH
Q 014358 277 AVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD---------EDAPLSDAFASRGLKYVSVLISF 347 (426)
Q Consensus 277 ~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 347 (426)
.+++++||+|||+|++||++..++..+.++|++..+......|.++.. ..+|+..++++.+.+....++.+
T Consensus 223 ~~~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~ 302 (489)
T PRK10836 223 LIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNA 302 (489)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHH
Confidence 999999999999999999999999999999999999988888866532 13688888888887888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhh---CHHHHHHHHHHHH
Q 014358 348 GAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF---NVRVLSHILSVGT 422 (426)
Q Consensus 348 ~~~~s~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 422 (426)
.++++.+++.++.+++.||++++|||||.+|++|+|+||+ ++|++|++++.+++.+..+.. +...++.+.++++
T Consensus 303 ~il~a~~~~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~~~-~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~ 379 (489)
T PRK10836 303 VILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLSRG-GVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSG 379 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCCC-CCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999975 999999999999887766553 2334554544433
No 12
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=2.7e-47 Score=376.01 Aligned_cols=333 Identities=23% Similarity=0.384 Sum_probs=281.9
Q ss_pred CCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHH
Q 014358 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (426)
Q Consensus 54 ~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~ 133 (426)
+.+++|++++++..++.++.++|+|+|..++...+. |+..+++|+++++..++.+++++||++++|+ +||.|+|+++.
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~-g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~-aGG~y~~~~~~ 80 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAST-GGIAIYGWLVTIIGALGLSMVYAKMSSLDPS-PGGSYAYARRC 80 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCChhHHHHHH
Confidence 345789999999999999999999999999987664 5568899999999999999999999999999 99999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHH
Q 014358 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (426)
Q Consensus 134 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (426)
+||..||+.||.+|+.+.............+.... +|.. .+.| ...++.++++++++.+|.
T Consensus 81 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~-------------~~~~~~~~~~~~~~~ln~ 141 (445)
T PRK10644 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYF---FPIL---KDPL-------------VLTITCVVVLWIFVLLNI 141 (445)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccc---CCcH-------------HHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877776666666676663 2221 1111 114566777888999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC-CCC---CchHHHHHHHHHHHHHhhhHHHHhhhhhhhCCCC
Q 014358 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP-FAP---NGFKEILTGATVVFFAYVGFDAVANSAEESKKPQ 289 (426)
Q Consensus 214 ~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~ 289 (426)
+|+|..+|++.+...++++.++.+.+.++...+.+++.+ +.+ +++.++..++....|+|.|+|.+++++||+|||+
T Consensus 142 ~gvk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~ 221 (445)
T PRK10644 142 VGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK 221 (445)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc
Confidence 999999999999999999888877776655444333322 111 2455677788899999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 290 RDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 368 (426)
Q Consensus 290 k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l 368 (426)
|++||++..++.+++++|++..++.....|++++. .+.|+.+++++..+++...++.+..+++.+++.++.+...+|++
T Consensus 222 r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~ 301 (445)
T PRK10644 222 RNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTA 301 (445)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888765 45788888887777777777888888999999999999999999
Q ss_pred HHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhh
Q 014358 369 LGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL 408 (426)
Q Consensus 369 ~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~ 408 (426)
+++||||.+||+|+|+|| +++|++|++++.+++.++.+.
T Consensus 302 ~a~ardg~lP~~~~~v~~-~~tP~~Ai~~~~~i~~l~~l~ 340 (445)
T PRK10644 302 KAAADDGLFPPIFARVNK-AGTPVAGLLIVGVLMTIFQLS 340 (445)
T ss_pred HHHHhCCCccHHHHhhCc-CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 599999999999998876654
No 13
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=9.2e-47 Score=372.48 Aligned_cols=347 Identities=25% Similarity=0.414 Sum_probs=286.8
Q ss_pred CCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCc-h-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHH
Q 014358 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-G-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAY 131 (426)
Q Consensus 54 ~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~-~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~ 131 (426)
+++++|++++++.++++++.++|+|+|..++.+...+|+ . .+++|++++++.++.+++++|+++++|+ +||.|.|++
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~-~GG~y~y~~ 81 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPE-NGADYVYLK 81 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCceeeHH
Confidence 456999999999999999999999999999987766664 4 8999999999999999999999999999 999999999
Q ss_pred HHhchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHH
Q 014358 132 TAFNELTAFLVFAQLM-LDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTI 210 (426)
Q Consensus 132 ~~~g~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (426)
+.+||.+||+.+|..+ ..+....+.......+|+... .|. +.+ ...++..+++.+...
T Consensus 82 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~---~~~-----~~~-------------~~~~~~~~~~~~~~~ 140 (445)
T PRK11357 82 NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFL---TPI-----DPL-------------LGKFIAAGLIIAFML 140 (445)
T ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCC-----chH-------------HHHHHHHHHHHHHHH
Confidence 9999999999999744 445556667777777777652 221 111 114566677777889
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCC-----CCc-hHHHHHHHHHHHHHhhhHHHHhhhhhh
Q 014358 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFA-----PNG-FKEILTGATVVFFAYVGFDAVANSAEE 284 (426)
Q Consensus 211 ~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~G~e~~~~~~~E 284 (426)
+|.+|+|..+|+|.++..++++.++++++.++...+.+++.+.. ..+ +.+++.++..+.|+|.|+|.+++++||
T Consensus 141 ln~~gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E 220 (445)
T PRK11357 141 LHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGE 220 (445)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHH
Confidence 99999999999999999999998877777665433334433211 112 557888899999999999999999999
Q ss_pred hCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHc--ChhHHHHHHHHHHHHHHHHHHHHHH
Q 014358 285 SKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASR--GLKYVSVLISFGAVAGLTTTLLVGL 361 (426)
Q Consensus 285 ~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~ 361 (426)
+|||+||+||++..++.+++++|++..+......|.+++.. +.|+.++++.. .+++...++.+..+++.+++.++.+
T Consensus 221 ~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 300 (445)
T PRK11357 221 IKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCV 300 (445)
T ss_pred hcCccccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888888754 56888777653 3455566677788888999999999
Q ss_pred HHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhhCHHHHHHHHHHHH
Q 014358 362 YVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGT 422 (426)
Q Consensus 362 ~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 422 (426)
.+.+|+++++||||.+|++|+|+|+|+++|++|++++.++++++.+..+.+.+..+.+...
T Consensus 301 ~~~sR~~~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 361 (445)
T PRK11357 301 MYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVM 361 (445)
T ss_pred HhhhhHHHHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 9999999999999999999999998899999999999999988877777766665555443
No 14
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=8e-47 Score=372.37 Aligned_cols=345 Identities=21% Similarity=0.319 Sum_probs=287.7
Q ss_pred CcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhc
Q 014358 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (426)
Q Consensus 56 ~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g 135 (426)
+++|++++++..++.+++++|+|+|..++... .+|+..+++|++++++.++.+++++|+++++|+ +||.|.|++|.+|
T Consensus 3 ~~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~-~GG~y~y~~~~~G 80 (438)
T PRK10655 3 AKSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-QVGTISILSWLVTAVGSMALAYAFAKCGMFSRK-SGGMGGYAEYAFG 80 (438)
T ss_pred CccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CCchHHHHHHHcC
Confidence 35789999999999999999999999998755 478888999999999999999999999999999 9999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhh
Q 014358 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (426)
Q Consensus 136 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (426)
|..||+.||.+++.+............+|+... ++. +.+.+ ...++.++++++.+.+|++|
T Consensus 81 ~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~---~~~---~~~~~-------------~~~~~~~~~l~~~~~ln~~g 141 (438)
T PRK10655 81 KSGNFMANYTYGVSLLIANVAIAISAVGYGTEL---FGA---TLSPV-------------QICLATIGVLWLCTVANFGG 141 (438)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccc---ccchH-------------HHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999887777666677777663 231 11111 12456677788899999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC-CCCCc---hHHHHHHHHHHHHHhhhHHHHhhhhhhhCCCCCC
Q 014358 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP-FAPNG---FKEILTGATVVFFAYVGFDAVANSAEESKKPQRD 291 (426)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~ 291 (426)
+|..+|++.+....+++.++++.+.++...+.+++.+ +.+.+ +.++..++..+.|+|.|+|.+++++||+|||+||
T Consensus 142 ~~~~~~i~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~ 221 (438)
T PRK10655 142 ARITGQISSVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERN 221 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCcccc
Confidence 9999999999999998888877776665545555432 33333 3567778889999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 292 LPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (426)
Q Consensus 292 ~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~ 370 (426)
+||++..+..+++++|++...+.....|.+++.. ++|+.+.+++..+++...++.+..+++.+++.++...+.+|++++
T Consensus 222 iPrAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~ 301 (438)
T PRK10655 222 VPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKS 301 (438)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888888887753 568888888877777777888888899999999999999999999
Q ss_pred hHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhh--C--HHHHHHHHHHHH
Q 014358 371 LGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF--N--VRVLSHILSVGT 422 (426)
Q Consensus 371 ~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~--~--~~~~~~l~~~~~ 422 (426)
++|||.+|++|+|+||+ ++|++|++++.+++.++.+.. + .+.++.+.++++
T Consensus 302 ~a~dg~lP~~~~~v~~~-~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~ 356 (438)
T PRK10655 302 SADEGYFPKIFSRVTKV-DAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAV 356 (438)
T ss_pred HhcCCchhHHHHhhCcC-CCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 99999999999999975 999999999998887665543 1 234555555444
No 15
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=2.7e-46 Score=369.96 Aligned_cols=345 Identities=22% Similarity=0.391 Sum_probs=287.3
Q ss_pred CCCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHH
Q 014358 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (426)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~ 132 (426)
++++++|+++.+|..+++++.++|+|+|..++...+.+||..+++|++++++.++.+++++|+++++|+ +||.|.|++|
T Consensus 3 ~~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~-~Gg~y~y~~~ 81 (457)
T PRK10580 3 SKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPA-ASSFSRYAQE 81 (457)
T ss_pred CCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHH
Confidence 345789999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHH
Q 014358 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (426)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (426)
.+||.+||+.||.+++.+....+......+.++..++ | +.+.| ...++++++...+|
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~----------------~~~~~~~~l~~~ln 138 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWF---P----TVPHW----------------IWVLSVVLIICAVN 138 (457)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---C----CCChH----------------HHHHHHHHHHHHHH
Confidence 9999999999999999998877777777777766532 2 22322 34556667788999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc-------cc-ccc---C-CC--CCCCCchHHHHHHHHHHHHHhhhHHHH
Q 014358 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAF-------EV-DVS---N-WS--PFAPNGFKEILTGATVVFFAYVGFDAV 278 (426)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~-------~~-~~~---~-~~--~~~~~~~~~~~~~~~~~~~~~~G~e~~ 278 (426)
++|+|..++++.++..++++.++++++.++. .. +.. + ++ ++.|+++.+++.++..+.|+|.|+|.+
T Consensus 139 ~~gv~~~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~ 218 (457)
T PRK10580 139 LMSVKVFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEII 218 (457)
T ss_pred HccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHH
Confidence 9999999999999999999887766544321 11 111 1 21 234667778999999999999999999
Q ss_pred hhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 014358 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (426)
Q Consensus 279 ~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (426)
++++||+|||+|++||++..+...+.++|+...+......|.+++.. ++|+...++..+.++...++.+.++.+.+++.
T Consensus 219 ~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 298 (457)
T PRK10580 219 GITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAI 298 (457)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888888763 56888888888888888888888889999999
Q ss_pred HHHHHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhh---hCHHHHHHHHHHHH
Q 014358 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL---FNVRVLSHILSVGT 422 (426)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~ 422 (426)
++++++.+|++++|||||.+|++|+|+|| +++|++|++++.++..+...+ .+.+.++.+.++++
T Consensus 299 ~~~~~~~sR~~~~~ardg~lP~~~~kv~~-~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (457)
T PRK10580 299 NSDVFGVGRMLHGMAEQGSAPKIFSKTSR-RGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLAT 365 (457)
T ss_pred HHHHHHHHHHHHHHHhCCCcCHHHHhhCC-CCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 99999999999999999999999999998 599999999997765443322 13344444444444
No 16
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-47 Score=362.92 Aligned_cols=359 Identities=22% Similarity=0.311 Sum_probs=311.5
Q ss_pred cCCCCCCcccccChHHHHHHHhhhh-hcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchh
Q 014358 50 RTNDGEGLLRRLGLFELVLIGVGAS-VGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAY 127 (426)
Q Consensus 50 ~~~~~~~l~r~l~~~~~~~l~~~~~-ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y 127 (426)
+.++|++++|++++++.+.++++.+ .-.|+-......+..+||. ..|+|++++.+.++++.+++|+++.+|+ +||.|
T Consensus 39 ~lgYkqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~Pt-sGgLy 117 (550)
T KOG1289|consen 39 ELGYKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPT-SGGLY 117 (550)
T ss_pred HcCCchhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCC-CCcHH
Confidence 6679999999999999999999865 2244444444556667775 9999999999999999999999999999 99999
Q ss_pred hHHHH----HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHH
Q 014358 128 LYAYT----AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPI 203 (426)
Q Consensus 128 ~~~~~----~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (426)
.|+.. .+||..+|++||...+++....++.....++.+.....+ .+|.|..+.++. .++..+
T Consensus 118 ~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l------~np~y~~~~~~~--------~~v~~a 183 (550)
T KOG1289|consen 118 FWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSL------TNPNYEPTNYHQ--------FGVFEA 183 (550)
T ss_pred HHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhh------cCCCCcccceEe--------ehHHHH
Confidence 99986 578899999999999999999999999999999987763 355555544433 778899
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc--------------cccCCCCCCCCchHHHHHHHHHHH
Q 014358 204 LLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV--------------DVSNWSPFAPNGFKEILTGATVVF 269 (426)
Q Consensus 204 ~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 269 (426)
+..+.+++|+.+.|..+|++.+...+.++.+++.++..+... +.+|.++|.+.|| .|..++....
T Consensus 184 i~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~-afil~f~~~~ 262 (550)
T KOG1289|consen 184 ILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGW-AFILGFFNPA 262 (550)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchH-HHHHhhccce
Confidence 999999999999999999999999999999998888776532 2345556656777 7899999999
Q ss_pred HHhhhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccc---cCC--CChHHHHHHHcChhHHHHH
Q 014358 270 FAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF---LDE--DAPLSDAFASRGLKYVSVL 344 (426)
Q Consensus 270 ~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~ 344 (426)
|++.|+|+.+|++||+|||+|+.||||+.+..+..++..+..+.+..+.++|. +.+ ++|+.+.+.+..++-....
T Consensus 263 wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~ 342 (550)
T KOG1289|consen 263 WTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVF 342 (550)
T ss_pred eEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEe
Confidence 99999999999999999999999999999999999999999999999888532 222 4799999977665555578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCc--hhhhhhcCCCCCchHHHHHHHHHHHHHHhhh--CHHHHHHHHHH
Q 014358 345 ISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLF--NVRVLSHILSV 420 (426)
Q Consensus 345 ~~~~~~~s~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~ 420 (426)
+....+++.+.++.+.+.+.||+.|+.||||.|| ++++|+|+++++|.+|+++..+++.++.++. +..+++++++.
T Consensus 343 ~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~ 422 (550)
T KOG1289|consen 343 LLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSA 422 (550)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 8889999999999999999999999999999999 9999999988999999999999999988886 88999999998
Q ss_pred HHHh
Q 014358 421 GTLL 424 (426)
Q Consensus 421 ~~l~ 424 (426)
+.+.
T Consensus 423 a~i~ 426 (550)
T KOG1289|consen 423 AAIA 426 (550)
T ss_pred HHHH
Confidence 8764
No 17
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=4.1e-46 Score=369.30 Aligned_cols=326 Identities=20% Similarity=0.357 Sum_probs=284.0
Q ss_pred CCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHH
Q 014358 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (426)
Q Consensus 54 ~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~ 133 (426)
+++++|+++.++..++++|.++|+|+|..++..++.+||..+++|++++++.++.+.+++|+++..|. .|+.|.|+++.
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~-~~~~~~ya~~~ 93 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLE-YKSFSDFASDL 93 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence 45699999999999999999999999999999999999998999999999999999999999999999 99999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHH
Q 014358 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (426)
Q Consensus 134 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (426)
+||..||+.||.+++++....+..+...+.++..+ +| ..+. ..++.+++.+++.+|+
T Consensus 94 ~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~---~p----~~~~----------------~~~~~~~~~~~~~iN~ 150 (469)
T PRK11049 94 LGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFW---FP----DLSD----------------WVASLAVVLLLLSLNL 150 (469)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cC----CCcH----------------HHHHHHHHHHHHHHHH
Confidence 99999999999999999877777777777777663 22 1122 2345566778889999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-------c--ccCCC------CCCCCchHHHHHHHHHHHHHhhhHHHH
Q 014358 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-------D--VSNWS------PFAPNGFKEILTGATVVFFAYVGFDAV 278 (426)
Q Consensus 214 ~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-------~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~G~e~~ 278 (426)
+|+|..+++|.+.+.+|++.++.+++.++... + ..++. ++.|+++.+++.++....|+|.|+|.+
T Consensus 151 ~g~~~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~ 230 (469)
T PRK11049 151 ATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELV 230 (469)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHH
Confidence 99999999999999999988888877765421 0 01121 244667778999999999999999999
Q ss_pred hhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 014358 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (426)
Q Consensus 279 ~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (426)
++++||+|||+|++||++..+.+...++|++.........|.+++.. ++|+.+.++..++++...++.+.++++.+++.
T Consensus 231 ~~~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~ 310 (469)
T PRK11049 231 GTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSA 310 (469)
T ss_pred HHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998899999999999999988888888754 47898888888888888899999999999999
Q ss_pred HHHHHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHH
Q 014358 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGI 404 (426)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~ 404 (426)
++.+++.+|++++|||||.+|++|+|+||| ++|++|++++.++..+
T Consensus 311 ~~~~~~~sR~l~a~ardg~lP~~~~kv~~~-~tP~~Ai~~~~~~~~~ 356 (469)
T PRK11049 311 NSGVFSTSRMLFGLAQEGVAPKAFAKLSKR-AVPAKGLTFSCICLLG 356 (469)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHhhCCC-CCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999986 9999999998876543
No 18
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=1e-45 Score=361.19 Aligned_cols=339 Identities=21% Similarity=0.280 Sum_probs=271.9
Q ss_pred cChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchhHHH
Q 014358 61 LGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAF 140 (426)
Q Consensus 61 l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~ 140 (426)
+++++..++.+++++|+|+|..++...+.+||..+++|++++++.++.+++++|+++++|+ +||.|.|+++.+||.+||
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~-aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPH-AGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHhHHHHhCchhHH
Confidence 5789999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhhH
Q 014358 141 LVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESS 220 (426)
Q Consensus 141 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 220 (426)
..||.+++.+....+.......+++...+ +. +.|. ...+..+++++.+.+|++|+|..+
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~-------------~~~~~~~~~~~~~~ln~~Gv~~~~ 138 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALF---GW-----SSWQ-------------LLLAELLTLALLWLLNLRGASSSA 138 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHc---CC-----CCch-------------HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999998877766655555556665532 21 1110 134566777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccCC--CCCCCCchHHHHHHHHHHHHHhhhHHHHhhhhhhhCCCCCChhHHHHH
Q 014358 221 VLNSCMTVVKVIIVIVVIFAGAFEVDVSNW--SPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILG 298 (426)
Q Consensus 221 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~ 298 (426)
|++.+...+.+..+..+... ...+..++ .+..+.++.+++.++..+.|+|.|+|.+++++||+|||+||+||++..
T Consensus 139 ~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~ 216 (410)
T PRK11021 139 NLQTVIALLIVALVVAIWWA--GDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMI 216 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHH--cCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHH
Confidence 99998876554433322211 11122222 233356788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCC
Q 014358 299 SLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLL 377 (426)
Q Consensus 299 ~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~a~d~~l 377 (426)
+...+.++|++..++.....+.++.. .+.|..+++++..+++...++.+..+++.+++.++.+++.+|++++|||||.+
T Consensus 217 ~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~l 296 (410)
T PRK11021 217 GLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRP 296 (410)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 99999999999988877666554432 34577777766655666667788888999999999999999999999999999
Q ss_pred chhhhhhcCCCCCchHHHHHHHHHHHHHHhhh-----CHHHHHHHHHHHHHh
Q 014358 378 PSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-----NVRVLSHILSVGTLL 424 (426)
Q Consensus 378 P~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~l~ 424 (426)
||+|+|+|| +++|++|++++.+++.++.++. +.+.+..+.+...++
T Consensus 297 P~~~~k~~~-~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li 347 (410)
T PRK11021 297 PSYLARLSA-RGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVL 347 (410)
T ss_pred cHHHHhhcc-CCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999997 4999999999988876655442 455555544444333
No 19
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=3.7e-46 Score=370.27 Aligned_cols=346 Identities=24% Similarity=0.411 Sum_probs=288.9
Q ss_pred CcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHh
Q 014358 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (426)
Q Consensus 56 ~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~ 134 (426)
+.+|+++.++..++.+++++|+|+|..++...+.+||. .+++|++++++.++.+++++|+++++|+++||.|+|+++.+
T Consensus 4 ~~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 4 AKSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred ccCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 34789999999999999999999999999988888886 79999999999999999999999999997899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHh
Q 014358 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (426)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (426)
||..||..||.+++.+............+++..++ |..... +.+ ...+++.+++++.+.+|++
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~---p~~~~~-~~~-------------~~~~~~~~~~~~~~~ln~~ 146 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFF---PLFGSG-NPV-------------PSILGASVLLWVFTFLVLR 146 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhcCC-CcH-------------HHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988887777777777777633 321111 111 1245667778889999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCC-CCC-------CCchHHHHHHHHHHHHHhhhHHHHhhhhhhhC
Q 014358 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS-PFA-------PNGFKEILTGATVVFFAYVGFDAVANSAEESK 286 (426)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 286 (426)
|+|..+|++.+...++++.++++++.++...+.+++. ++. ++.+.+++.++....|+|.|+|.+++++||+|
T Consensus 147 Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k 226 (473)
T TIGR00905 147 GVRQAAFINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAK 226 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 9999999999999999988888877665533333221 111 12456788889999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CCh-HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 287 KPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAP-LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQ 364 (426)
Q Consensus 287 ~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 364 (426)
| +|++||++..+..+++++|++..++.....|.+++.+ ++| ..++.+...+++...++.+..+++.+++.++.+.+.
T Consensus 227 ~-~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~ 305 (473)
T TIGR00905 227 N-KSDVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLA 305 (473)
T ss_pred c-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999888888888753 567 667777777788888889999999999999999999
Q ss_pred HHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhh--CHHHHHHHHHH
Q 014358 365 SRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF--NVRVLSHILSV 420 (426)
Q Consensus 365 sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~ 420 (426)
+|++++|||||.+|++|+|+||| ++|++|++++.+++.++.++. ..+.+..+.++
T Consensus 306 sR~~~amardg~lP~~~~~v~~~-~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~ 362 (473)
T TIGR00905 306 AEVPFSAAKDGLFPKIFGRVNKN-GAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSL 362 (473)
T ss_pred HHHHHHHHhCCChhHHHHhhCcc-CCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 99999999999999999999986 999999999999887655442 33344444443
No 20
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=7.1e-46 Score=366.06 Aligned_cols=347 Identities=26% Similarity=0.395 Sum_probs=288.3
Q ss_pred CCCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHH
Q 014358 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAY 131 (426)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~ 131 (426)
++++++|+++.++.++++++.++| |.+...+..+..+||. .+++|++++++.++.+++++|+++++|+ +||.|.|++
T Consensus 1 ~~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~-~Gg~y~~~~ 78 (442)
T TIGR00908 1 QHRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPT-AGGGYGFAR 78 (442)
T ss_pred CCchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHH
Confidence 356799999999999999999997 7788877788889995 8899999999999999999999999999 999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHH
Q 014358 132 TAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIV 211 (426)
Q Consensus 132 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (426)
+.+||..||..||.+++.+....+.++..+++++...+ | ..+. .+...+++++...+
T Consensus 79 ~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~---p----~~~~----------------~~~~~~~~~~~~~l 135 (442)
T TIGR00908 79 RAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLF---P----VGPG----------------WLAALVFYIVFIGI 135 (442)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c----cCch----------------hHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988743 2 2222 24566777788899
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCC--------CCCCCCchHHHHHHHHHHHHHhhhHHHHhhhhh
Q 014358 212 LCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNW--------SPFAPNGFKEILTGATVVFFAYVGFDAVANSAE 283 (426)
Q Consensus 212 ~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~ 283 (426)
|++|+|..+|++.+..+++++.++++......+.+..++ .++.+.++.+++.++..+.|+|.|+|.+++++|
T Consensus 136 n~~g~~~~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~ae 215 (442)
T TIGR00908 136 NILGVGEAAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAE 215 (442)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887766555443332222221 234455677889999999999999999999999
Q ss_pred hhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHcCh--hHHHHHHHHHHHHHHHHHHHHH
Q 014358 284 ESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGL--KYVSVLISFGAVAGLTTTLLVG 360 (426)
Q Consensus 284 E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~ 360 (426)
|+|||+||+||++..+..++.++|+..........+.+++. .++|+.+++++..+ .+...++.+..+++.+++.++.
T Consensus 216 E~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~ 295 (442)
T TIGR00908 216 ETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGI 295 (442)
T ss_pred HhcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887777677777764 45688888876532 3556667777788888999999
Q ss_pred HHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhc
Q 014358 361 LYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLLV 425 (426)
Q Consensus 361 ~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~ 425 (426)
+++.+|++++|||||.+|++|+|+| |+++|++|++++.+++.++.+..+.+.+..+.++..++.
T Consensus 296 ~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~ 359 (442)
T TIGR00908 296 IYGYSRQIFALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIIS 359 (442)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 579999999999999887777666666565555554443
No 21
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=5e-46 Score=372.22 Aligned_cols=350 Identities=27% Similarity=0.371 Sum_probs=282.0
Q ss_pred CCCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCch--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHH
Q 014358 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG--VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYA 130 (426)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~--~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~ 130 (426)
++++++|+++.++.+++++++++|+|+|..++..++.+|+. .+++|++++++.++.+++++|+++++|+ +||.|+|+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~-sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPK-SGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCchhhhH
Confidence 55679999999999999999999999999999999888873 5689999999999999999999999999 99999999
Q ss_pred HHHhchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHH
Q 014358 131 YTAFNELTAFLVFAQLMLDY-HIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (426)
Q Consensus 131 ~~~~g~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (426)
++.+||.+||+.+|.+++.. ....+..+..+++++... .++. ...+.|. ..+++.+++++.+
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~--~~~~--~~~~~~~-------------~~~i~~~~i~~~~ 177 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTP--VFPD--CEVPEWA-------------IRLVAVLCVLLLT 177 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCC--CCCchHH-------------HHHHHHHHHHHHH
Confidence 99999999999999887643 344555556666665331 1221 1122221 2567778888999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccc---ccC--CCCCC---CCchHHHHHHHHHHHHHhhhHHHHhhh
Q 014358 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD---VSN--WSPFA---PNGFKEILTGATVVFFAYVGFDAVANS 281 (426)
Q Consensus 210 ~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~---~~~--~~~~~---~~~~~~~~~~~~~~~~~~~G~e~~~~~ 281 (426)
.+|++|+|..+|++.+...++++.++++++.++.... ..+ ....+ +++..++..++..+.|+|.|+|.++++
T Consensus 178 ~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~ 257 (501)
T TIGR00911 178 LVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFV 257 (501)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 9999999999999999999999988877776654321 111 11111 234567888999999999999999999
Q ss_pred hhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHH-HHcChhHHHHHHHHHHHHHHHHHHHHH
Q 014358 282 AEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAF-ASRGLKYVSVLISFGAVAGLTTTLLVG 360 (426)
Q Consensus 282 ~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~ 360 (426)
+||+|||+|++||++..+..+++++|++..++.....|.+++..+++....+ +...+ ....++.+.+.++.+++.++.
T Consensus 258 a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~ 336 (501)
T TIGR00911 258 TEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALVGLSCFGSVNGS 336 (501)
T ss_pred HHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888888876654444333 33223 456677788889999999999
Q ss_pred HHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhhCHHHHHHHHHHH
Q 014358 361 LYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVG 421 (426)
Q Consensus 361 ~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 421 (426)
+++.+|+++++||||.+|++|+|+|+|+++|++|+++..+++++.....+...+..+.++.
T Consensus 337 ~~~~sR~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~ 397 (501)
T TIGR00911 337 LFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFA 397 (501)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999999999999999999999988999999999998887666555555444444433
No 22
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-47 Score=377.18 Aligned_cols=354 Identities=36% Similarity=0.597 Sum_probs=297.0
Q ss_pred CCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-CchhhHHH
Q 014358 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVV-GGAYLYAY 131 (426)
Q Consensus 54 ~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~-Gg~y~~~~ 131 (426)
+++++|+|+.+|+.++++|+++|+|+|+..+.++..+||+ .+++++++++.+++.+++++|++.++|. + |+.|.|++
T Consensus 25 ~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~-~aGs~~~ya~ 103 (554)
T KOG1286|consen 25 ETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPV-SAGSFYTYAY 103 (554)
T ss_pred cchhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheeccc-ccccceeeee
Confidence 3689999999999999999999999999999999888875 9999999999999999999999999999 7 99999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc---cCCCccccCCCccccccchhhHHHHHHHHHHH
Q 014358 132 TAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFK---ENIPSWIGHGGEEFLGGTLSINILAPILLALL 208 (426)
Q Consensus 132 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (426)
|.+|+.+||++||.|++.|+...++++.+.+.++..+.+ .+... ++.+. ......++.+.
T Consensus 104 ~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~-~~~~~~~~~~~~~----------------~~~~~~fla~~ 166 (554)
T KOG1286|consen 104 RFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG-ASLIGILVDTVNP----------------GGWIPDFLAFI 166 (554)
T ss_pred eeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-cccccccccCCCC----------------CccHHHHHHHH
Confidence 999999999999999999999999999999999999641 00000 01111 11222333334
Q ss_pred HHHHH------hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC---------CCCCchHHHHHHHHHHHHHhh
Q 014358 209 TIVLC------WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP---------FAPNGFKEILTGATVVFFAYV 273 (426)
Q Consensus 209 ~~~~~------~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 273 (426)
..+|. .++|....++.++..+.++.+..++..+....|..||.+ |.|.++.+++.+...+.|+|.
T Consensus 167 v~in~~gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~ 246 (554)
T KOG1286|consen 167 LIINLFGVLAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFI 246 (554)
T ss_pred HHHHHHHHhhccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHh
Confidence 44444 455555556666666555555555555555555545542 778889999999999999999
Q ss_pred hHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccc--cCCCC----hHHHHHHHcChhHHHHHHHH
Q 014358 274 GFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF--LDEDA----PLSDAFASRGLKYVSVLISF 347 (426)
Q Consensus 274 G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~ 347 (426)
|+|.++..+||+|||+|++|+|+..++.++.++|++..+.+...+|+++ +..+. |+....+..+.+..+.++++
T Consensus 247 G~e~va~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna 326 (554)
T KOG1286|consen 247 GFELVATTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNA 326 (554)
T ss_pred hHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhH
Confidence 9999999999999999999999999999999999999999999999988 65544 66555566666667779999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhhCH------HHHHHHHHHH
Q 014358 348 GAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNV------RVLSHILSVG 421 (426)
Q Consensus 348 ~~~~s~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~ 421 (426)
+++++..+++++.+++++|.+++|||||.+||+|+++||+ |+|+.|++++.+++++..+..+. +.+.++.+++
T Consensus 327 ~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~ 405 (554)
T KOG1286|consen 327 GILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIG 405 (554)
T ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999998 99999999999999888888876 8899999998
Q ss_pred HHhcC
Q 014358 422 TLLVL 426 (426)
Q Consensus 422 ~l~~~ 426 (426)
++++|
T Consensus 406 tl~~w 410 (554)
T KOG1286|consen 406 TLFAW 410 (554)
T ss_pred HHHHH
Confidence 88764
No 23
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=1.5e-45 Score=366.24 Aligned_cols=365 Identities=22% Similarity=0.274 Sum_probs=282.2
Q ss_pred CCCCCCcccccChHHHHHHHhhhh-hcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhH
Q 014358 51 TNDGEGLLRRLGLFELVLIGVGAS-VGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLY 129 (426)
Q Consensus 51 ~~~~~~l~r~l~~~~~~~l~~~~~-ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~ 129 (426)
.+++++++|+++.++.+.++++.+ ++.|++..++..++.+||..+++|++++++.++++++++||++++|+ +||.|+|
T Consensus 5 ~g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~-aGG~Y~~ 83 (475)
T TIGR03428 5 FGYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPI-SGAIYQW 83 (475)
T ss_pred cCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCHHHH
Confidence 568889999999999999999975 88999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHH
Q 014358 130 AYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (426)
Q Consensus 130 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (426)
++|.+||.+||++||.+++++....+........++........... ..+++... .+..+..++..+++++.+
T Consensus 84 ~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~ 156 (475)
T TIGR03428 84 SRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIG-EDPTLTSP------SGAANAVLLGSVLLVLTT 156 (475)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-cCccccCC------CchHHHHHHHHHHHHHHH
Confidence 99999999999999999999987776666655555433211000000 01111100 001123567777888899
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccc-------CCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhhh
Q 014358 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS-------NWSPFAPNGFKEILTGATVVFFAYVGFDAVANSA 282 (426)
Q Consensus 210 ~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~ 282 (426)
.+|++|+|..+|++.+..+++++.++++++.++...+.+ ++.+..+.....++.+.....|+|.|+|.+++++
T Consensus 157 ~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a 236 (475)
T TIGR03428 157 VINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELS 236 (475)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 999999999999999999999887777766655433211 1111112223467778888999999999999999
Q ss_pred hhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccc--cCCCChHHHHH-HHcChhHHHHHHHHHHHHHHHHHHHH
Q 014358 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF--LDEDAPLSDAF-ASRGLKYVSVLISFGAVAGLTTTLLV 359 (426)
Q Consensus 283 ~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~ 359 (426)
||+|||+|++||++..++.++.++|.+..+......++.+ ...+++...++ +..+.++.. .+...++++.+++.++
T Consensus 237 eE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~-~~~~~~~i~~~~~~~~ 315 (475)
T TIGR03428 237 EETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWGT-VLLVDVAIAILVCTLA 315 (475)
T ss_pred HHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888887776655422 11112222333 334444443 4445567888999999
Q ss_pred HHHHHHHHHHHhHhcCCCc--hhhhhhcCCCCCchHHHHHHHHHHHHHHhhh--CHHHHHHHHHHHHHh
Q 014358 360 GLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLF--NVRVLSHILSVGTLL 424 (426)
Q Consensus 360 ~~~~~sR~l~~~a~d~~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~ 424 (426)
...+.||++|++||||.+| ++|+|+|+|+++|++|+++..+++.++.++. +.++++.+.++++..
T Consensus 316 ~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~ 384 (475)
T TIGR03428 316 IQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVL 384 (475)
T ss_pred HHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 9999999999999999999 5899999888999999999999988777764 567777777776653
No 24
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-46 Score=347.86 Aligned_cols=346 Identities=25% Similarity=0.420 Sum_probs=315.3
Q ss_pred CCCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHH
Q 014358 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (426)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~ 132 (426)
++++++|.|+.+|..++++|+.||+|+|...+...+.+||+.++++++++++.+.+.-.++||...-|+ .|++.+|+++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~-~gSF~~~a~~ 85 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPV-SGSFSDYARK 85 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcHHHHHHH
Confidence 455699999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHH
Q 014358 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (426)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (426)
.+||+.||.+||.||+.|+....+...+.+.|++.++. +.|.| +.+++.+.+...+|
T Consensus 86 ~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP-------~vP~W----------------v~al~~~~l~~~~N 142 (462)
T COG1113 86 YLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFP-------DVPQW----------------VFALAAVVLLLAVN 142 (462)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCcHH----------------HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999665 55776 46778888899999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-----------cccCCC---CCCCCchHHHHHHHHHHHHHhhhHHHH
Q 014358 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-----------DVSNWS---PFAPNGFKEILTGATVVFFAYVGFDAV 278 (426)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~G~e~~ 278 (426)
..++|.++.++..+..+|++.++.+++.++... +.+|+. +++|+|+.+++.++...+|+|.|.|.+
T Consensus 143 L~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElv 222 (462)
T COG1113 143 LISVKVFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELV 222 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999888765421 122332 578999999999999999999999999
Q ss_pred hhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 014358 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (426)
Q Consensus 279 ~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (426)
...+.|+|||+|++|||+-.....+.++|+...+.+....|+++..+ .+|+...++..|.+....++++.++.+.++++
T Consensus 223 GitA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~ 302 (462)
T COG1113 223 GITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSAL 302 (462)
T ss_pred HHHHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcc
Confidence 99999999999999999999999999999999999999999998765 56999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhh---CHHHHHHHHHHHHH
Q 014358 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF---NVRVLSHILSVGTL 423 (426)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~l 423 (426)
|+..++.+|+++.+|+||..||.++|+||+ ++|.+|++++.++..+..++. ..+.+.-+.+.+++
T Consensus 303 NSglystsRmL~~la~~g~APk~~~klsk~-gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~ 370 (462)
T COG1113 303 NSGLYSTSRMLYSLAKQGDAPKAFAKLSKR-GVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGL 370 (462)
T ss_pred cccccccchHHHHHhhcCcccHhHhhcccc-CCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 999999999999999999999999999996 999999999998876655554 55566666665554
No 25
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-46 Score=354.18 Aligned_cols=350 Identities=27% Similarity=0.447 Sum_probs=305.0
Q ss_pred CCCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCc-h-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHH
Q 014358 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-G-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYA 130 (426)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~-~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~ 130 (426)
++.+++||++.+....+.+++++|+|+|..|..++..+|+ + ++..|+++++++++.++|++||++.+|+ +||+|.|.
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipk-sGgd~ayi 84 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPK-SGGDYAYI 84 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCcchhhH
Confidence 4556889999999999999999999999999999999998 4 9999999999999999999999999999 99999999
Q ss_pred HHHhchhHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHH
Q 014358 131 YTAFNELTAFLVFAQLMLDYHIG-AASIARSLASY-VVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALL 208 (426)
Q Consensus 131 ~~~~g~~~g~~~g~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (426)
.+.+||.++|...|.-++..... .+.++..+++| ++. .+| ....|.+.. .+++.++++++
T Consensus 85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p---~fp--~c~~p~~~~-------------~lla~~~l~~l 146 (479)
T KOG1287|consen 85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKP---FFP--LCDVPRVAS-------------KLLAAALLVLL 146 (479)
T ss_pred HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc---cCC--CCCCchHHH-------------HHHHHHHHHHH
Confidence 99999999999999977765544 58888999999 555 333 123333332 78999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc---cccCCCCC-C---CCchHHHHHHHHHHHHHhhhHHHHhhh
Q 014358 209 TIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV---DVSNWSPF-A---PNGFKEILTGATVVFFAYVGFDAVANS 281 (426)
Q Consensus 209 ~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~---~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~G~e~~~~~ 281 (426)
+++|+..+|+..|+|.+++..|++.+.++++.++... +.+|+.+. + ..+..++..++....|+|.|||...+.
T Consensus 147 t~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~v 226 (479)
T KOG1287|consen 147 TLINSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYV 226 (479)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccc
Confidence 9999999999999999999999999999999988743 23333221 1 233456888999999999999999999
Q ss_pred hhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHH-cChhHHHHHHHHHHHHHHHHHHHHH
Q 014358 282 AEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFAS-RGLKYVSVLISFGAVAGLTTTLLVG 360 (426)
Q Consensus 282 ~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~ 360 (426)
+||+|||+||+|||+..++.+++++|++..++...+++++|+...+..+..+.+ ..+.+. +++.+.+.++++++.++.
T Consensus 227 teEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ 305 (479)
T KOG1287|consen 227 TEEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSV 305 (479)
T ss_pred hHhhcCccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhH
Confidence 999999999999999999999999999999999999999999776666666644 455554 999999999999999999
Q ss_pred HHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhhCHHHHHHHHHHHH
Q 014358 361 LYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGT 422 (426)
Q Consensus 361 ~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 422 (426)
+.+.||+.+++||+|+||+.|+++|++..+|..+++++..++++..+..|.+.+.+..++..
T Consensus 306 ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~ 367 (479)
T KOG1287|consen 306 IFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAY 367 (479)
T ss_pred HHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999877999999999999999888888888777777654
No 26
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=2.7e-45 Score=361.01 Aligned_cols=315 Identities=22% Similarity=0.354 Sum_probs=273.2
Q ss_pred HHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchhHHHHHHHHHHH
Q 014358 69 IGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLML 148 (426)
Q Consensus 69 l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~~ 148 (426)
+++|+++|+|+|..++..++.+||..+++|++++++.++.+++++||++++|+ +||.|+|++|.+||.+||..||.+|+
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~-~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPD-TGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eeecchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 014358 149 DYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTV 228 (426)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 228 (426)
.+....+.+....+.+++.+. + +.+. .+++.+++++.+.+|++|+|..+++|.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~---~----~~~~----------------~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~ 137 (446)
T PRK10197 81 FWVLVIPLEANIAAMILHSWV---P----GIPI----------------WLFSLVITLALTGSNLLSVKNYGEFEFWLAL 137 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---c----cCcH----------------HHHHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Confidence 999988888766666555421 1 1221 4677888888999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccc-------ccC----C--CCCCCCchHHHHHHHHHHHHHhhhHHHHhhhhhhhCCCCCChhHH
Q 014358 229 VKVIIVIVVIFAGAFEVD-------VSN----W--SPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIG 295 (426)
Q Consensus 229 ~~i~~~~~~~i~~~~~~~-------~~~----~--~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~a 295 (426)
+|++.++.+++.++.... ..+ + .++.|+++.+++.++....|+|.|+|.+++++||+|||+|++||+
T Consensus 138 ~ki~~li~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPra 217 (446)
T PRK10197 138 CKVIAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRA 217 (446)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHH
Confidence 999988887766553211 111 1 134467888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCC--CChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 014358 296 ILGSLLICAALYVGVSLVLTGMVPYKFLDE--DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGR 373 (426)
Q Consensus 296 i~~~~~~~~v~y~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~a~ 373 (426)
+..+...+.++|++..+......|.++.+. .+++..+.+..++++...++.+.++++.+++.++.+++.+|+++++||
T Consensus 218 i~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ar 297 (446)
T PRK10197 218 TNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSR 297 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999998888876443 346777788888888889999999999999999999999999999999
Q ss_pred cCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhh
Q 014358 374 DGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL 408 (426)
Q Consensus 374 d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~ 408 (426)
||.+||+|+|+|| +++|++|++++.+++.+..+.
T Consensus 298 dg~lP~~~~~~~~-~~~P~~Ail~~~~~~~l~~l~ 331 (446)
T PRK10197 298 RGDAPAVMGKINR-SKTPYVAVLLSTGAAFLTVVV 331 (446)
T ss_pred CCCcCHHHHhhCc-CCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999996 599999999998877655444
No 27
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=7.4e-45 Score=362.35 Aligned_cols=340 Identities=20% Similarity=0.314 Sum_probs=280.5
Q ss_pred ccccChHHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhch
Q 014358 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (426)
Q Consensus 58 ~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~ 136 (426)
||+++.+|..+++++.++|+|+|..++..++.+||. .+++|++++++.++.+++++||++++|+++||+|.|+++.+||
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 589999999999999999999999999999999996 7999999999999999999999999995266788899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhh
Q 014358 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (426)
Q Consensus 137 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (426)
.+||.+||.++++|+...+......+.++... .+ ..+. .....+++++.+.+|++|+
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~----------------~~~~~~~~~~~~~in~~gv 137 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYW---TD----KVNP----------------AVWIAIFYVFIVIINLFGV 137 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CC----CCCH----------------HHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999888888877652 11 1111 1223455667788999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccc--c--------ccCC---CCCCCC----chHHHHHHHHHHHHHhhhHHHHh
Q 014358 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEV--D--------VSNW---SPFAPN----GFKEILTGATVVFFAYVGFDAVA 279 (426)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~~~~~i~~~~~~--~--------~~~~---~~~~~~----~~~~~~~~~~~~~~~~~G~e~~~ 279 (426)
|..+|++.+...+|++.++.+++.++... + ..++ ..+.+. .+.++..++..+.|+|.|+|.++
T Consensus 138 ~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~ 217 (478)
T TIGR00913 138 KGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVA 217 (478)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHH
Confidence 99999999999998877776665543321 0 1111 122222 26678999999999999999999
Q ss_pred hhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccc--cC--------CCChHHHHHHHcChhHHHHHHHHHH
Q 014358 280 NSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF--LD--------EDAPLSDAFASRGLKYVSVLISFGA 349 (426)
Q Consensus 280 ~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (426)
+++||+|||+|++||++..+..++.++|++..+......|.++ +. .++|+....+..+.++...++.+.+
T Consensus 218 ~~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 297 (478)
T TIGR00913 218 LTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVI 297 (478)
T ss_pred HHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHH
Confidence 9999999999999999999999999999999888877777664 21 1368877778888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhh---CHHHHHHHHHHH
Q 014358 350 VAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF---NVRVLSHILSVG 421 (426)
Q Consensus 350 ~~s~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~ 421 (426)
+++.+++.++.+++.+|+++++||||.+|++|+|+|| +++|++|++++.+++.+..+.. +.+.++.+.+++
T Consensus 298 ~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~~-~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~ 371 (478)
T TIGR00913 298 LISVLSAANSSLYASSRTLYALAHQGLAPKIFAYVDR-RGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNIS 371 (478)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhCCcccHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997 5999999999998876544432 234555555543
No 28
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=1.3e-44 Score=358.66 Aligned_cols=344 Identities=22% Similarity=0.358 Sum_probs=283.5
Q ss_pred cccChHHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-CchhhHHHHHhch
Q 014358 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVV-GGAYLYAYTAFNE 136 (426)
Q Consensus 59 r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~-Gg~y~~~~~~~g~ 136 (426)
|++++++..++.+++++|+|+|..++...+.+||. .+++|++++++.++.+++++|+++++|+ + ||.|+|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~-~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPE-LDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCChhhhHHhHcCc
Confidence 78999999999999999999999999999989986 8999999999999999999999999999 6 5999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhh
Q 014358 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (426)
Q Consensus 137 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (426)
..||..||.+|+++......+......++... +|......+. ...++..++++....+|++|+
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~---~p~~~~~~~~--------------~~~~~~~~~~~~~~~ln~~Gv 142 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYF---FPIFGGGNNP--------------PSIIGASVLLWCVHFLVLRGV 142 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccccCCCcH--------------HHHHHHHHHHHHHHHHHHhCH
Confidence 99999999999998887777666666666552 2322111111 113455666778889999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC-----C-----CCCchHHHHHHHHHHHHHhhhHHHHhhhhhhhC
Q 014358 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP-----F-----APNGFKEILTGATVVFFAYVGFDAVANSAEESK 286 (426)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 286 (426)
|..+|+|.+..++|+++++++++.++...+.+++.+ . .++.+.++..++....|+|.|+|.+++++||.|
T Consensus 143 ~~~~~i~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k 222 (468)
T TIGR03810 143 EGAAFINTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAE 222 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhcc
Confidence 999999999999999888888776654333222211 0 112245677888899999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CCh-HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 287 KPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAP-LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQ 364 (426)
Q Consensus 287 ~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 364 (426)
| +||+||++..++..+.++|++..+......|.+++.+ ++| ..+++++..+++...++.+.++++.+++.++++...
T Consensus 223 ~-~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~ 301 (468)
T TIGR03810 223 K-RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLP 301 (468)
T ss_pred C-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 7999999999999999999999999998888887653 445 666777778888889999999999999999999999
Q ss_pred HHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhh--hCHHHHHHHHHHHH
Q 014358 365 SRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL--FNVRVLSHILSVGT 422 (426)
Q Consensus 365 sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 422 (426)
+|++++|||||.+||+|+|+|| +++|++|++++.+++.++.++ .+.+.++.+.++++
T Consensus 302 sR~~~a~ardg~lP~~f~k~~~-~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~ 360 (468)
T TIGR03810 302 AEIPLLMAKDKLMPKYFGKENA-NGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLAT 360 (468)
T ss_pred HHHHHHHHhCCCccHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 9999999999999999999997 599999999998888665544 24455555555444
No 29
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=5.6e-44 Score=373.06 Aligned_cols=358 Identities=17% Similarity=0.199 Sum_probs=292.3
Q ss_pred CCcccccChHHHHHHH-hhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCCchhhHHH
Q 014358 55 EGLLRRLGLFELVLIG-VGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASR-FPAVVGGAYLYAY 131 (426)
Q Consensus 55 ~~l~r~l~~~~~~~l~-~~~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~-~p~~~Gg~y~~~~ 131 (426)
+..+|++++++.+++- +++++|+|+|.+++++++.+|.. +++.|+++++++++++++++|++++ +|+ +||.|.|++
T Consensus 72 ~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~-aGG~Y~yis 150 (953)
T TIGR00930 72 PAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVK-GGGAYYLIS 150 (953)
T ss_pred CCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ccHHHHHHH
Confidence 3456899999999887 99999999999999999999986 8999999999999999999999999 999 999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHH
Q 014358 132 TAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIV 211 (426)
Q Consensus 132 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (426)
|.+||.+|+.+||.+++++.+..+.++.++++++..++....... ..+. .....+++.+++++++.+
T Consensus 151 ralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~-~~~~------------~~~~~iia~i~l~ll~~I 217 (953)
T TIGR00930 151 RSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKI-MVDP------------INDIRIYGTVTVVVLLGI 217 (953)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-ccCc------------cccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998653100000 0000 001257888999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccc-----------c----cCCCCCCCCchHHHHHHHHHHHHHhhhHH
Q 014358 212 LCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-----------V----SNWSPFAPNGFKEILTGATVVFFAYVGFD 276 (426)
Q Consensus 212 ~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~G~e 276 (426)
|+.|+|...|+|.++.+++++.++.+++.++.... . +|+.+..+.+..++...+...+++|.|+|
T Consensus 218 n~~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~ 297 (953)
T TIGR00930 218 SFAGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGIL 297 (953)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888776653211 0 12222223333346666677778999999
Q ss_pred HHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CC------------------hHHHH----H
Q 014358 277 AVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DA------------------PLSDA----F 333 (426)
Q Consensus 277 ~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~------------------~~~~~----~ 333 (426)
+.++++||+|||+|++|||++.++.+++++|++..+++..+.+.+.... +. |.... +
T Consensus 298 agan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~ 377 (953)
T TIGR00930 298 AGANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNL 377 (953)
T ss_pred HHHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchH
Confidence 9999999999999999999999999999999999988877776544321 00 11111 1
Q ss_pred HH-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCc--hhhhhhcCCCCCchHHHHHHHHHHHHHHhhhC
Q 014358 334 AS-RGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFN 410 (426)
Q Consensus 334 ~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~ 410 (426)
.. ........++.++++++++++.++++.+++|+++++||||.+| ++|+|+|+|+++|++|++++++++.++.++.+
T Consensus 378 ~~~~~~~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~ 457 (953)
T TIGR00930 378 QVMSLVSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAE 457 (953)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 11 1112245688889999999999999999999999999999999 89999998889999999999999999998889
Q ss_pred HHHHHHHHHHHHHhcC
Q 014358 411 VRVLSHILSVGTLLVL 426 (426)
Q Consensus 411 ~~~~~~l~~~~~l~~~ 426 (426)
.+.+..+.+...+++|
T Consensus 458 l~~ia~lis~~fLl~Y 473 (953)
T TIGR00930 458 LNTIAPIISNFFLASY 473 (953)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998888888765
No 30
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=2.8e-43 Score=351.22 Aligned_cols=359 Identities=19% Similarity=0.245 Sum_probs=280.9
Q ss_pred CCCCCCcccccChHHHHHHHhhhh-hcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhh
Q 014358 51 TNDGEGLLRRLGLFELVLIGVGAS-VGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYL 128 (426)
Q Consensus 51 ~~~~~~l~r~l~~~~~~~l~~~~~-ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~ 128 (426)
.+++++++|+++.++.++++++.+ ...|++...+..++.+||. .+++|++++++.++.+++++||++++|+ +||.|+
T Consensus 4 ~g~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~-~Gg~y~ 82 (482)
T TIGR00907 4 LGYKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPT-SGGQYF 82 (482)
T ss_pred cCCcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCC-CccHHH
Confidence 467888999999999999999955 2378888888888889995 8999999999999999999999999999 999999
Q ss_pred HHHHHhc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHH
Q 014358 129 YAYTAFN----ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPIL 204 (426)
Q Consensus 129 ~~~~~~g----~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (426)
|++|.+| +..+|+.||.+++++....+......++++...+.... ..+.|... .....++..++
T Consensus 83 ~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~--------~~~~~~i~~~~ 150 (482)
T TIGR00907 83 WSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTT----PGREYIPT--------RWHIFGIMIGI 150 (482)
T ss_pred HHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCcccc--------CchhhhhHHHH
Confidence 9999876 57799999999999999999888888888876543111 00011111 11124566777
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccc---------cCCC----CCCCCchHHHHHHHHHHHHH
Q 014358 205 LALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDV---------SNWS----PFAPNGFKEILTGATVVFFA 271 (426)
Q Consensus 205 ~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~---------~~~~----~~~~~~~~~~~~~~~~~~~~ 271 (426)
+++.+.+|++|+|..++++.+..+++++.++++.+..+...+. +++. ++.++++ +++.++..+.|+
T Consensus 151 ~~~~~~in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fs 229 (482)
T TIGR00907 151 HLIHALINSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWS 229 (482)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHH
Confidence 8889999999999999999999888887777555443332111 1111 1223344 577778888999
Q ss_pred hhhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhccc-ccccC---CCChHHHHHHH-cChhHHHHHHH
Q 014358 272 YVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVP-YKFLD---EDAPLSDAFAS-RGLKYVSVLIS 346 (426)
Q Consensus 272 ~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~-~~~~~~~~~~~ 346 (426)
|.|+|.+++++||+|||+|++||++..++.+..+++++..+......+ .+++. .++|+.+++.. .+.++...++.
T Consensus 230 f~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~ 309 (482)
T TIGR00907 230 MTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLL 309 (482)
T ss_pred hcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHH
Confidence 999999999999999999999999999999888776666655544443 23221 23588888765 45557777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCc--hhhhhhcCCCCCchHHHHHHHHHHHHHHhhh--CHHHHHHHHHHHH
Q 014358 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLF--NVRVLSHILSVGT 422 (426)
Q Consensus 347 ~~~~~s~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 422 (426)
+.++++.+++.++.+++.||+++++||||.+| ++|+|+|||+++|++|++++.+++.++.++. +.+.++.+.++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~ 389 (482)
T TIGR00907 310 CLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCT 389 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88899999999999999999999999999999 9999999988999999999999987766654 4456666665554
Q ss_pred H
Q 014358 423 L 423 (426)
Q Consensus 423 l 423 (426)
.
T Consensus 390 ~ 390 (482)
T TIGR00907 390 V 390 (482)
T ss_pred H
Confidence 3
No 31
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=4.3e-41 Score=331.21 Aligned_cols=325 Identities=33% Similarity=0.576 Sum_probs=277.8
Q ss_pred cChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCCchhhHHHHHhchhHH
Q 014358 61 LGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAAS-VLNALCYAELASRFPAVVGGAYLYAYTAFNELTA 139 (426)
Q Consensus 61 l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~-~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g 139 (426)
+++++.+.+.++.++|+|++..+ ..+.+|+..++.|++++++. ++.+++++|+++++|+ +||.|.|+++.+||++|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~--~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~-~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP--AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPS-AGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH--HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-STTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-cCeeeehhhhcccccch
Confidence 58999999999999999998877 66668888999999998888 8999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhh
Q 014358 140 FLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGES 219 (426)
Q Consensus 140 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 219 (426)
++.+|.+++.+....+.......+++...++ + +.+.+ .....++++++++..+.+|++|.|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~-----------~~~~~~i~~~~~~~~~~l~~~g~~~~ 140 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFG--P----DLNPS-----------PWPQFLIAIILILLFTLLNLLGIKLS 140 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT--G----GGTCS-----------HHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhccc--c----ccccc-----------cchheeeeecccccceEeeechhhhh
Confidence 9999999999999998888888888877432 1 11110 11226788899999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhhcccccccC-------CCCCCCCchHHHHHHHHHHHHHhhhHHHHhhhhhhhCCCCCC
Q 014358 220 SVLNSCMTVVKV-IIVIVVIFAGAFEVDVSN-------WSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRD 291 (426)
Q Consensus 220 ~~~~~~~~~~~i-~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~ 291 (426)
+|++.+...+++ ..++++++.++...+.+. .+++.|+++.+++.++....|+|.|+|.+++++||.|| |+
T Consensus 141 ~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ 218 (426)
T PF13520_consen 141 GKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KT 218 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HH
T ss_pred hhhhhhhhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hh
Confidence 999999999999 566666666665433221 23455667777899999999999999999999999887 89
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC----hHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 292 LPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDA----PLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (426)
Q Consensus 292 ~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~ 367 (426)
+||++..+.+++.++|++..++.....|+++....+ +....++..++++...++.+..+++.+++.++.+.+.+|+
T Consensus 219 ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~ 298 (426)
T PF13520_consen 219 IPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRL 298 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred heeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhc
Confidence 999999999999999999999999999998875432 4666777777789999999999999999999999999999
Q ss_pred HHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhh
Q 014358 368 YLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL 408 (426)
Q Consensus 368 l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~ 408 (426)
++++||||.+|++|+|+| |+++|++|+++..+++.++.++
T Consensus 299 l~~~a~d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~ 338 (426)
T PF13520_consen 299 LYAMARDGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLL 338 (426)
T ss_dssp HHHHHHTTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHH
Confidence 999999999999999999 5799999999999999666543
No 32
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=7.5e-40 Score=326.38 Aligned_cols=335 Identities=39% Similarity=0.586 Sum_probs=290.8
Q ss_pred CCCCcccccChHH-HHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHH
Q 014358 53 DGEGLLRRLGLFE-LVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAY 131 (426)
Q Consensus 53 ~~~~l~r~l~~~~-~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~ 131 (426)
++++++|+++.++ ...+..+.++|.|+|..++.....+ +...+.|++++++....+++++|+++++|+ +||.|.|++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~-~GG~y~~~~ 83 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPS-AGGAYAYAK 83 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeeeehh
Confidence 4566789999999 8888999999999999999888766 554555999999999889999999999999 999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-cCCCccccCCCccccccchhhHHHHHHHHHHHHH
Q 014358 132 TAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFK-ENIPSWIGHGGEEFLGGTLSINILAPILLALLTI 210 (426)
Q Consensus 132 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (426)
+.+||+.++.++|.+++.+....+........++...+. ... ...+. ....+++.+++++..+
T Consensus 84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 147 (466)
T COG0531 84 RALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFP---GPGLLSIGP-------------LLIILIALALIALLTL 147 (466)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---cchhhcCCc-------------hHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888443 210 00110 2237888999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCC---C--CCchHHHHHHHHHHHHHhhhHHHHhhhhhhh
Q 014358 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPF---A--PNGFKEILTGATVVFFAYVGFDAVANSAEES 285 (426)
Q Consensus 211 ~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 285 (426)
+|.+|+|...+++.+...++++.++.+.+.++...+..+...+ . ......++.++....|+|.|+|.+++++||+
T Consensus 148 ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~ 227 (466)
T COG0531 148 LNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEV 227 (466)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHh
Confidence 9999999999999999999999999999988876655432211 1 1234468889999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC---ChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 286 KKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED---APLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLY 362 (426)
Q Consensus 286 k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 362 (426)
|||+|++||++..+.+.+.++|++..++.....|.+++... .|..+......+.++..++.+..+++.+++.+++..
T Consensus 228 knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~ 307 (466)
T COG0531 228 KNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWIL 307 (466)
T ss_pred cCccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887655543 688888888777888999999999999999999999
Q ss_pred HHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHH
Q 014358 363 VQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGIL 405 (426)
Q Consensus 363 ~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~ 405 (426)
+.+|.+++|||||.+|++|+|+|+|+++|.+++++..+++..+
T Consensus 308 ~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l 350 (466)
T COG0531 308 AVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLIL 350 (466)
T ss_pred HHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999889999999999999833
No 33
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=4.7e-42 Score=342.04 Aligned_cols=326 Identities=30% Similarity=0.493 Sum_probs=278.3
Q ss_pred HHHHHhhhhhcchhhhchHHhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchhHHHHHHH
Q 014358 66 LVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFA 144 (426)
Q Consensus 66 ~~~l~~~~~ig~gi~~~~~~~~~~~G~-~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~ 144 (426)
+.++++++++|.|+|...+..+..+|| +.++++++++++.+..+.+++||++++|+ +||.|.|++|.+||..|+..||
T Consensus 2 v~~~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~-~Gg~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 2 VFMISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPS-AGGFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcc-ccchhhhhhhccCCcCCceeeH
Confidence 346788999999999999999999999 58999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCC-ccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 014358 145 QLMLDYHIGAASIARSLASYVVSILELFPFFKENIP-SWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLN 223 (426)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 223 (426)
.|++.+....+.+....+.+++..- . ..+.+ .|.+. .++..++++++..+|+.|+|..+|++
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~------------~~~~~i~~~~~~~l~~~gv~~~~~~~ 143 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWG----Y-FPGLPSTWVWG------------ILIAIIFILLITLLNLFGVRVSGKIE 143 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccc----c-ccccccccccc------------chhhhhhhhhhhhhhhhhhhccchHH
Confidence 9999999999998888877666530 0 11333 33210 14577888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh-cc-ccc--ccCC---------CCCCCCc--------hHHHHHHHHHHHHHhhhHHHHhhhh
Q 014358 224 SCMTVVKVIIVIVVIFAG-AF-EVD--VSNW---------SPFAPNG--------FKEILTGATVVFFAYVGFDAVANSA 282 (426)
Q Consensus 224 ~~~~~~~i~~~~~~~i~~-~~-~~~--~~~~---------~~~~~~~--------~~~~~~~~~~~~~~~~G~e~~~~~~ 282 (426)
.++..++++.++.+++.+ +. ..+ ..+. .+..+++ +.+++.++..++|+|.|+|.++.++
T Consensus 144 ~~~~~i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a 223 (478)
T PF00324_consen 144 FILTIIKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILA 223 (478)
T ss_pred HHHHHHhhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhccccccccccccc
Confidence 999999999999888877 21 111 1111 1223444 7889999999999999999999999
Q ss_pred hhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC------ChHHHHHHHcChhHHHHHHHHHHHHHHHHH
Q 014358 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED------APLSDAFASRGLKYVSVLISFGAVAGLTTT 356 (426)
Q Consensus 283 ~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 356 (426)
||+|||||++|||+..++++.+++|++..++.....|+++.... +|+.++.+..++++...++.+..+.+.+++
T Consensus 224 ~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~ 303 (478)
T PF00324_consen 224 EEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSS 303 (478)
T ss_pred ccCCCchhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhh
Confidence 99999999999999999999999999999999999998885432 488899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhh
Q 014358 357 LLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF 409 (426)
Q Consensus 357 ~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~ 409 (426)
.++.++++||++++|||||.+|+++.++++|+|+|++|++++.+++++..+..
T Consensus 304 ~~~~~~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~ 356 (478)
T PF00324_consen 304 ANASLYAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLG 356 (478)
T ss_pred hhhhhcccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeec
Confidence 99999999999999999999995555555557999999999999988777654
No 34
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=6.8e-38 Score=311.44 Aligned_cols=345 Identities=21% Similarity=0.322 Sum_probs=249.7
Q ss_pred cccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCCchhhHHHHHhchh
Q 014358 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAAS-VLNALCYAELASRFPAVVGGAYLYAYTAFNEL 137 (426)
Q Consensus 59 r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~-~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~ 137 (426)
||++.+++.++.+..+++.. ..+ ..+..|+.++..|++++++. ++.+++++||++++|+ +||.|.|++|.+||.
T Consensus 1 ~~~~~~~l~~~~~~~v~~~~--~~~--~~a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~GG~y~~~~~a~G~~ 75 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSLR--GLP--AEAEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPE-KGGVFRWVGEAFGAR 75 (474)
T ss_pred CcccHHHHHHHHHHHHHHhh--cch--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCceeeHhhhcChh
Confidence 56999999999987775422 222 33568888999999999876 5899999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhh
Q 014358 138 TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVG 217 (426)
Q Consensus 138 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (426)
+||..+|.+|+++....+......+..+.... +... ..+.. ..+......+.++++++.+.+|++|+|
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~---~~~~-~~~~~--------~~~~~~~~~~~l~~~~~~~~in~~gv~ 143 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIG---PEAT-VDESL--------AGNKLYVLVSVLFVYWLATFIALRGVA 143 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---Cccc-cCccc--------ccccHHHHHHHHHHHHHHHHHHhcChH
Confidence 99999999999998766654443333333211 1000 00000 001112234566667778899999999
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHhhhccc---cc-c---cCCCCCCCC--chHHHHHHHHHHHHHhhhHHHHhhhhhhhCC
Q 014358 218 ESSVLNSCMTVV-KVIIVIVVIFAGAFE---VD-V---SNWSPFAPN--GFKEILTGATVVFFAYVGFDAVANSAEESKK 287 (426)
Q Consensus 218 ~~~~~~~~~~~~-~i~~~~~~~i~~~~~---~~-~---~~~~~~~~~--~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 287 (426)
..+|++.+...+ ++++++++++.++.. .+ . .++.++.|+ ++..+..+. ..+|+|.|+|.++.++||+||
T Consensus 144 ~~~~i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~kn 222 (474)
T TIGR03813 144 AFTKVAKWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDVDN 222 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhccC
Confidence 999999886544 344444444433321 11 1 112222332 233333222 457899999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCh----HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 288 PQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAP----LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYV 363 (426)
Q Consensus 288 p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 363 (426)
|+|++||++..+..++.++|++..++.....|+++...+++ +.+..+..+.++...++.+..+++.+++.++++.+
T Consensus 223 P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~ 302 (474)
T TIGR03813 223 PDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAG 302 (474)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888765433 33444555667777778888888999999999999
Q ss_pred HHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhh----CH-HHHHHHHHHHH
Q 014358 364 QSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF----NV-RVLSHILSVGT 422 (426)
Q Consensus 364 ~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~----~~-~~~~~l~~~~~ 422 (426)
.+|+++++||||.+|++|+|+|| +++|++|++++.+++.++.++. +. +.++.+.++++
T Consensus 303 ~sR~~~a~ardg~lP~~~~kv~k-~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~ 365 (474)
T TIGR03813 303 PSSGMLAVAKAGYLPTFFQKTNK-NGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTV 365 (474)
T ss_pred HHHHHHHHhhcCCCCHHHhccCC-CCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999999996 6999999999998765544332 32 34555554443
No 35
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=1.2e-36 Score=303.19 Aligned_cols=330 Identities=20% Similarity=0.258 Sum_probs=242.0
Q ss_pred cccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHH-HHHHHHHHHHHHhhCC-CCCCchhhHHHHHh
Q 014358 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAA-SVLNALCYAELASRFP-AVVGGAYLYAYTAF 134 (426)
Q Consensus 57 l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~-~~~~~~~~~el~~~~p-~~~Gg~y~~~~~~~ 134 (426)
.+||++.+++.++.++.+. +++..+ ..+..|...+..|++++++ .++.+++++||++++| + +||.|+|++|.+
T Consensus 2 ~~~~l~~~~~~~~~~~~v~--~~~~~~--~~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~-~GG~y~wv~~a~ 76 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVL--AVYEYP--TFATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWE-EGGIFAWVSNTL 76 (507)
T ss_pred CCcEeeHHHHHHHHHHHHH--HHHhhH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC-CCCeeeehhhcc
Confidence 3578999999999988774 334333 3456778777778887776 6899999999999997 7 899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHh
Q 014358 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (426)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (426)
||.+||+.+|.+|+.+....+.........+..... .+.. ..+.| ...+..++++++.+++|++
T Consensus 77 G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~-~~~~--~~~~~-------------~~~i~~l~i~~~~t~~n~~ 140 (507)
T TIGR00910 77 GERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK-FPAL--NEDPI-------------IKFIAALIIFWALAFSQFG 140 (507)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cchh--ccCcH-------------HHHHHHHHHHHHHHHHHHh
Confidence 999999999999998876554443333333333211 1110 11111 1245566778889999999
Q ss_pred hhhhhHHHHHHHHHHHHHH-HHHHHhhhcccc---cc----cCCCCCCCCc-hHHHHHHHHHHHHHhhhHHHHhhhhhhh
Q 014358 215 GVGESSVLNSCMTVVKVII-VIVVIFAGAFEV---DV----SNWSPFAPNG-FKEILTGATVVFFAYVGFDAVANSAEES 285 (426)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~-~~~~~i~~~~~~---~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 285 (426)
|.|..++++.+.....++. .+++++.+.... +. .+..++.|+. ..+.+..+....|+|.|+|.+++++||+
T Consensus 141 G~k~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~ 220 (507)
T TIGR00910 141 GTKRTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINEL 220 (507)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHc
Confidence 9999999998865544333 333333222211 11 1122333321 1234445555689999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHH----HHHcC--hhHHHHHHHHHHHHHHHHHHHH
Q 014358 286 KKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDA----FASRG--LKYVSVLISFGAVAGLTTTLLV 359 (426)
Q Consensus 286 k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~s~~~~~~~ 359 (426)
|||+|++||+++.+++++.++|.+..+++....|++++...++.... ....+ ..+...++.+..+++.+++.++
T Consensus 221 knP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~ 300 (507)
T TIGR00910 221 ENPGRDYPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIAS 300 (507)
T ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888888888887654433332 33333 2466667888889999999999
Q ss_pred HHHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhh
Q 014358 360 GLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL 408 (426)
Q Consensus 360 ~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~ 408 (426)
++++.+|+++++||||.+|++|+|+|| +++|.+|++++.+++.++.++
T Consensus 301 ~i~~~sR~l~~~ardg~lP~~~~k~nk-~~~P~~a~~~~~~i~~l~~~~ 348 (507)
T TIGR00910 301 WIVGPSRGMFAAAQKGLLPAAFAKMNK-HEVPVPLVIIQGIITSIAGAI 348 (507)
T ss_pred HHHHHHHHHHHhcccCCcCHHHHhhCc-CCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 599999999999998775443
No 36
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=1e-35 Score=297.03 Aligned_cols=339 Identities=18% Similarity=0.227 Sum_probs=239.9
Q ss_pred CcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCchhhHHHHHh
Q 014358 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAA-SVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (426)
Q Consensus 56 ~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~-~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~ 134 (426)
+++|+++++++.++.++.++|.+. .......+|+..++.|++++++ .++.+++++||++++|+++||.|+|+++.+
T Consensus 4 ~~~~~l~~~~l~~~~~~~vig~~~---~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~ 80 (496)
T PRK15238 4 NTKKKLSLIGLILMIFTSVFGFAN---SPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSV 80 (496)
T ss_pred cccCeeeHHHHHHHHHHHHHhCCc---hHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHc
Confidence 457899999999999999998652 2334556888866666666655 689999999999999963699999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHH
Q 014358 135 NELTAFLVFAQLMLDYHIGAASIARSLAS-YVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (426)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (426)
||++|+..+|.++..+............. .....++. . ..+.|.... ........+++++++++.+++|.
T Consensus 81 G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~----~~~~~~~~~~a~~~~~~~t~vn~ 151 (496)
T PRK15238 81 GPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGK--D---TTQTWHFLG----LNSTQVVGILAVIWMILVTFVAS 151 (496)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--c---hhhhhhhhc----ccchHHHHHHHHHHHHHHHHHHc
Confidence 99999999999888887665433322111 11111110 0 011110000 00111123456666668899999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhh----hcccc-c---ccCCCCCC---CCc---hHHHHHHHHHHHHHhhhHHHHh
Q 014358 214 WGVGESSVLNSCMTVVKVIIVIVVIFA----GAFEV-D---VSNWSPFA---PNG---FKEILTGATVVFFAYVGFDAVA 279 (426)
Q Consensus 214 ~g~~~~~~~~~~~~~~~i~~~~~~~i~----~~~~~-~---~~~~~~~~---~~~---~~~~~~~~~~~~~~~~G~e~~~ 279 (426)
+|+|...|++++.+.+++...+++++. .+... + ..++.++. ..+ ..+++.++..+.|+|.|+|.++
T Consensus 152 ~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~ 231 (496)
T PRK15238 152 KGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVG 231 (496)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHH
Confidence 999999999998877766443222211 11111 1 11111111 111 1357778888999999999999
Q ss_pred hhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-------CChHHHHHHHcC---------------
Q 014358 280 NSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-------DAPLSDAFASRG--------------- 337 (426)
Q Consensus 280 ~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------------- 337 (426)
+++||+|||||++||++..+..++.++|++..+......|.++... +.|+. ..+..+
T Consensus 232 ~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~ 310 (496)
T PRK15238 232 GLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASL 310 (496)
T ss_pred HHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhh
Confidence 9999999999999999999999999999999888877777666543 12222 122211
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhh
Q 014358 338 --LKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL 408 (426)
Q Consensus 338 --~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~ 408 (426)
+.++..++.+..+++.+++.++..++.+|.+++.+|||.+||+|+|+|| +|+|++|++++.++..++.+.
T Consensus 311 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~nk-~g~P~~a~~~~~~i~~l~~~~ 382 (496)
T PRK15238 311 TLGVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLNK-NGMPANAMWLQCIIVSVFILL 382 (496)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhCc-CCCcHHHHHHHHHHHHHHHHH
Confidence 2344556778889999999999999999999999999999999999996 599999999999888765433
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.96 E-value=9.9e-27 Score=225.45 Aligned_cols=324 Identities=15% Similarity=0.103 Sum_probs=255.1
Q ss_pred HHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchhHHHHHHHHHH
Q 014358 68 LIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLM 147 (426)
Q Consensus 68 ~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~ 147 (426)
.+.+++++|+|++..|....+.+++.+++..+++++++...+++++|+++++|+ +||.|+|.++.+||..+++.+|.++
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~-~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG-GASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 456788999999999998777666677888899999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 014358 148 LDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMT 227 (426)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 227 (426)
+.+....+++....++++...+.. ......+. .+..+++.+++..++..|.|...|++.++.
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~--~~~~~~~~----------------~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~ 144 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGE--YFGFPWSA----------------RAIVLIFTVLFGSFVWLSTSAVDRITRVLI 144 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHH--hcCCCccH----------------HHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 998888888888888888775431 11111111 345667777888999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCC--CCchHHHHHHHHHHHHHhhhHH-HHhhhhhhhCCCCCChhHHHHHHHHHHH
Q 014358 228 VVKVIIVIVVIFAGAFEVDVSNWSPFA--PNGFKEILTGATVVFFAYVGFD-AVANSAEESKKPQRDLPIGILGSLLICA 304 (426)
Q Consensus 228 ~~~i~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~G~e-~~~~~~~E~k~p~k~~p~ai~~~~~~~~ 304 (426)
..+++.++.+++.++.+.+.+|+.+.. +.++.++..++....++| |+| ..+.+.+|.||++|++||++..+..++.
T Consensus 145 ~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~ 223 (381)
T TIGR00837 145 FGKIIAFALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIAL 223 (381)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 999999888888888777777765532 235667788888888888 665 6888899998779999999999999999
Q ss_pred HHHHHHHHHHHhcccccccCC-------CChHHHHHHH-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCC
Q 014358 305 ALYVGVSLVLTGMVPYKFLDE-------DAPLSDAFAS-RGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGL 376 (426)
Q Consensus 305 v~y~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~a~d~~ 376 (426)
++|++..+...+..|.+++.+ .+++.+.++. .++++...++.+..+++..++.++...+.++.+..
T Consensus 224 ~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~------ 297 (381)
T TIGR00837 224 VLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLAD------ 297 (381)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 999999999999999988752 1355666665 56677888888999999999999988888855443
Q ss_pred CchhhhhhcCCCCCchHHHHHHHHHHHHHHhhhCHHHHHHHHHHH
Q 014358 377 LPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVG 421 (426)
Q Consensus 377 lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 421 (426)
.+++.+++++ |..+.++..+...++........+..+-..+
T Consensus 298 ---~~~~~~~~~~-~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G 338 (381)
T TIGR00837 298 ---LFKFDDSKKG-RFKTGLLTFLPPLVFALFYPEGFLYAIGYAG 338 (381)
T ss_pred ---HhCCCcccCC-CchhhhhhHHhHHHHHHHhhHHHHHHHHHHH
Confidence 3444333323 6677777777777777666444444444444
No 38
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.96 E-value=9.7e-28 Score=231.03 Aligned_cols=359 Identities=15% Similarity=0.202 Sum_probs=280.2
Q ss_pred ccChHHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchhH
Q 014358 60 RLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELT 138 (426)
Q Consensus 60 ~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~ 138 (426)
-=+...++.-++.++.|.-+|.+..++++.+|.. .++..++++.+.++++.+++.++++--.++||.|..++|.+||.+
T Consensus 114 mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGPEF 193 (1075)
T KOG2082|consen 114 MGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGPEF 193 (1075)
T ss_pred cceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCccc
Confidence 3345566677999999999999999999999986 899999999999999999999999987778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhhh
Q 014358 139 AFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGE 218 (426)
Q Consensus 139 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 218 (426)
|-.+|.++.++..+..++++....+.+... ++|........-. .+..........+.+.+++++.+++...|+|.
T Consensus 194 GgAVGlcFYLgtT~AaaMYIlGaVEi~L~Y--i~P~aaIf~~~~a---~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~ 268 (1075)
T KOG2082|consen 194 GGAVGLCFYLGTTVAAAMYILGAVEIFLTY--IFPAAAIFGAEDA---HDEAAAMLNNLRVYGTVFLILMALIVFVGVKF 268 (1075)
T ss_pred cceeeehhhhhhHHHHHHHHHhHHHHHHHH--HccHhhhcCcccc---ccchhhhhcceehHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987763 2333211111000 00011112234688999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccc------------------------------cccC-------------------
Q 014358 219 SSVLNSCMTVVKVIIVIVVIFAGAFEV------------------------------DVSN------------------- 249 (426)
Q Consensus 219 ~~~~~~~~~~~~i~~~~~~~i~~~~~~------------------------------~~~~------------------- 249 (426)
+.|+..++..+.++.++.+.+.++... +.+|
T Consensus 269 Vnk~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c 348 (1075)
T KOG2082|consen 269 VNKFAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATC 348 (1075)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCccc
Confidence 999999999999998888877665310 0011
Q ss_pred --------CC-------------------CC------CCCc-------------------hHHHHHHHHHHHHHhhhHHH
Q 014358 250 --------WS-------------------PF------APNG-------------------FKEILTGATVVFFAYVGFDA 277 (426)
Q Consensus 250 --------~~-------------------~~------~~~~-------------------~~~~~~~~~~~~~~~~G~e~ 277 (426)
.. .+ .+.| ...|..-+.+-+-+.+|+-+
T Consensus 349 ~~y~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGIma 428 (1075)
T KOG2082|consen 349 DEYFSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMA 428 (1075)
T ss_pred ccccccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeee
Confidence 00 00 0000 11233333333447899999
Q ss_pred HhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHH-----HcChhHHHHHHHHHHHHH
Q 014358 278 VANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFA-----SRGLKYVSVLISFGAVAG 352 (426)
Q Consensus 278 ~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~s 352 (426)
.++.+++.|||+|.+|.+.+.+.++...+|+...+.+..++....+.+. +.+... ....-+-++++.+..++|
T Consensus 429 GSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDK--fG~sv~g~lVva~laWPsPwVi~IGsFlS 506 (1075)
T KOG2082|consen 429 GSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDK--FGQSVGGNLVVATLAWPSPWVIVIGSFLS 506 (1075)
T ss_pred cCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhh--hhhhccCcEEEEEecCCCceeeehhHHHH
Confidence 9999999999999999999999999999999999988887764333321 111110 011112456788899999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCCCc--hhhhhhcCCCCCchHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhcC
Q 014358 353 LTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLLVL 426 (426)
Q Consensus 353 ~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~ 426 (426)
++++++.++.++.|+|++.|||+.+| +.|++..++ |.|..|++++.+++...+++.+.+.+..+.++..|++|
T Consensus 507 T~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~n-gEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY 581 (1075)
T KOG2082|consen 507 TCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKAN-GEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCY 581 (1075)
T ss_pred HhHHHHhhhcCcHHHHHHHhhcCccchhhhhccccCC-CCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 999998885 99999999999999999999999999999999999885
No 39
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.96 E-value=8e-28 Score=229.97 Aligned_cols=354 Identities=18% Similarity=0.205 Sum_probs=283.7
Q ss_pred ccChHHHHHHHhh-hhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchh
Q 014358 60 RLGLFELVLIGVG-ASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNEL 137 (426)
Q Consensus 60 ~l~~~~~~~l~~~-~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~ 137 (426)
+|+.++..+.-.. ++...=+|.+.+.+++.+|-- .++..+++..+.+.+.++++.++++--.+.||.|..++|.+||.
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGpE 145 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGPE 145 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCcc
Confidence 7888776644332 344455789999999999985 89999999999999999999999998776999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhh
Q 014358 138 TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVG 217 (426)
Q Consensus 138 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (426)
+|.-+|..++++.++.+++++..+.+-+.+.++ . +.. .....+.+-+++++.++.+.+++.+++.+++.|..
T Consensus 146 fGGSIGllFf~anV~~~am~isG~vE~il~nfG---~---~a~--g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsa 217 (945)
T KOG1288|consen 146 FGGSIGLLFFVANVFNCAMNISGFVEPILDNFG---K---EAQ--GASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSA 217 (945)
T ss_pred cCCeeeehhhHHHHhcchhhhhhhhHHHHHhcC---c---ccc--CCcccccCCCCcchhhHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999988665 1 000 01122334455666689999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccccccCCC-----------------------------------CCCCCchHHHH
Q 014358 218 ESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS-----------------------------------PFAPNGFKEIL 262 (426)
Q Consensus 218 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~ 262 (426)
.++|..+++.+...+.+..+.+..+....+++-. +....+..+|-
T Consensus 218 lfAkas~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~ 297 (945)
T KOG1288|consen 218 LFAKASNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFA 297 (945)
T ss_pred HHHhhhhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehh
Confidence 9999999888777776666666555433222110 01111223455
Q ss_pred HHHHHHHHHhhhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHH
Q 014358 263 TGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVS 342 (426)
Q Consensus 263 ~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (426)
..+...+-..+|.-+.++|++|.|+|.|.+||+.+.++....+.|++..+++....|+..+..+..+. ... +...
T Consensus 298 ~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~---~~i--sl~p 372 (945)
T KOG1288|consen 298 STFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVM---MHI--SLHP 372 (945)
T ss_pred hhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhhe---eec--cccc
Confidence 55555566778999999999999999999999999999999999999999999999888777664222 111 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCc--hhhhhhcCCCCCchHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Q 014358 343 VLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSV 420 (426)
Q Consensus 343 ~~~~~~~~~s~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 420 (426)
+++.+.++.+.+.+.++.+.++||+|.++|||+.+| ..|+|...+.+.|++|+.++.+++-++.++++.+.+.++.++
T Consensus 373 ~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~ 452 (945)
T KOG1288|consen 373 PFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITM 452 (945)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 566778888889999999999999999999999999 788888777799999999999999999999999999999999
Q ss_pred HHHhcC
Q 014358 421 GTLLVL 426 (426)
Q Consensus 421 ~~l~~~ 426 (426)
..+++|
T Consensus 453 ~FLlty 458 (945)
T KOG1288|consen 453 TFLLTY 458 (945)
T ss_pred HHHHHH
Confidence 998875
No 40
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.94 E-value=6.3e-24 Score=204.17 Aligned_cols=288 Identities=17% Similarity=0.248 Sum_probs=243.2
Q ss_pred cccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchhH
Q 014358 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELT 138 (426)
Q Consensus 59 r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~ 138 (426)
+++|.+|..++.++.++|+|++..|+...+.+|+++|++++++++.+++.+++++|+++++|+ . +.++|.++.+||..
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~-~-~~~~~~~~~~Gk~~ 78 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE-K-NFSEILSKYLGKIL 78 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC-C-CHHHHHHHHhhHHH
Confidence 368999999999999999999999999999899999999999999999999999999999999 5 79999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhhh
Q 014358 139 AFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGE 218 (426)
Q Consensus 139 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 218 (426)
|++.+|.+++......+......+++++..+. | ++|. .++..++++++...+..|.|.
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~----~tp~----------------~~~~l~~l~~~~~~~~~Gi~~ 136 (359)
T TIGR00912 79 GRLLSILFILYFFLIAAYLIRIFADFIKTYLL--P----RTPI----------------IVIIILIIIVSIYIVRKGIEV 136 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C----CCCH----------------HHHHHHHHHHHHHHHHccHHH
Confidence 99999999988777777888888888776321 2 4444 346677788888899999999
Q ss_pred hHHHHHHHHHHHHHH-HHHHHhhhcccccccCCCCCCCCchHHHHHHHH-HHHHHhhhHHHHhhhhhhhCCCCCChhHHH
Q 014358 219 SSVLNSCMTVVKVII-VIVVIFAGAFEVDVSNWSPFAPNGFKEILTGAT-VVFFAYVGFDAVANSAEESKKPQRDLPIGI 296 (426)
Q Consensus 219 ~~~~~~~~~~~~i~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai 296 (426)
.+|++.+...++++. ++++........+.+|..|..++++.+.+.+.. ...|+|.|+|......+|.||| |+.||++
T Consensus 137 i~r~~~i~~~~~i~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~ 215 (359)
T TIGR00912 137 LLRTAEILLIIFLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSI 215 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHH
Confidence 999999999888877 344444455556778888988899988888887 8899999999999999999996 5699999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHcChh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014358 297 LGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLK-Y---VSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (426)
Q Consensus 297 ~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~---~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ 371 (426)
..+...++++|.+..+...+..++++.+. ..|..+..+....+ . ...++....+.+.+......+++.++.+..+
T Consensus 216 ~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~ 295 (359)
T TIGR00912 216 IKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKL 295 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888775 56888888765433 2 3445666677777777778888888887654
No 41
>PHA02764 hypothetical protein; Provisional
Probab=99.88 E-value=2e-20 Score=164.92 Aligned_cols=275 Identities=19% Similarity=0.244 Sum_probs=181.2
Q ss_pred CCCCCcccccChHHHHHHHhhhhh-cchhhhchHHhh-hhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhH
Q 014358 52 NDGEGLLRRLGLFELVLIGVGASV-GAGIFVVTGTVA-RDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLY 129 (426)
Q Consensus 52 ~~~~~l~r~l~~~~~~~l~~~~~i-g~gi~~~~~~~~-~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~ 129 (426)
++.+++-|+.+.+|.++..++.+- |.++ ..+.... ...|...+++|+++++++++.+++++|+++++|+ +||.|+|
T Consensus 5 ReSSGLVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPr-AGGdYVY 82 (399)
T PHA02764 5 RKSSGIIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPL-NGGDYAY 82 (399)
T ss_pred hhcCCceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCceEEE
Confidence 467889999999999999998763 3322 2122222 2234458999999999999999999999999999 9999999
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHH
Q 014358 130 AYTAFNELTAFLVFAQLMLDYHIGAASIARSLA-SY-VVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLAL 207 (426)
Q Consensus 130 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (426)
.+|.+||..|++.||..|..+....+...-... +. ++..+.+ ..+. .-...
T Consensus 83 ISRAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~~~~~i~~~~~~--------------------------f~~~-~s~~~ 135 (399)
T PHA02764 83 IRTAFSSKFYTIFGISLWLTYVLSQPILGDLVLLNFNIQNQFEQ--------------------------FLIV-ESLFP 135 (399)
T ss_pred hHHhhCccHHHHHHHHHHHHHHhhcchhhheeeeeeeeHHHHHH--------------------------HHHH-HHHHH
Confidence 999999999999999999998888776543221 10 1110000 1111 11122
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc--cccccCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhhhhhh
Q 014358 208 LTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF--EVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEES 285 (426)
Q Consensus 208 ~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 285 (426)
...+...+.|..+|...++....++ ..+..... +...+|++- ++ ....++....-.|.=.|+..++++|.
T Consensus 136 i~~~i~~~~~~~~~~v~il~~a~~i---~aif~~~~s~n~~~~~f~~--sn---t~~~a~~~~l~~~~fi~a~~y~~~ei 207 (399)
T PHA02764 136 IVLLIIANKKIYAKIVDILAIAQII---IAIFIAFKSFNFQYQNFTI--SN---TLLSALLFDLSAFIFINAISYIAGEI 207 (399)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHH---HHHHhhccceeEEEcceee--hH---HHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 2233344678888877775554443 11111111 112222221 11 34455555566666789999999999
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 286 KKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQS 365 (426)
Q Consensus 286 k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s 365 (426)
||-+|....+...+...+..+-+.... .+ ..+....+....++-.....--.|
T Consensus 208 ~n~~k~~~~gyf~s~~~~~~~~ii~sy------------------------~n---~~il~~~~~~w~~~y~~~~~~~~s 260 (399)
T PHA02764 208 KNIKKSSMIGYFVSYGIVAILSIIDSY------------------------SN---LNILFALMPIWFFSYMPIANKIQS 260 (399)
T ss_pred hcchhhhhhhhHHHHHHHHHHHHHHhh------------------------hh---HHHHHHHHHHHHHhheeeecchHH
Confidence 999999988888887766655443330 00 011112233444444444556689
Q ss_pred HHHHHhHhcCCCchhhhhhcCCCCCch
Q 014358 366 RLYLGLGRDGLLPSIFAKVHPKRHTPV 392 (426)
Q Consensus 366 R~l~~~a~d~~lP~~~~~~~~~~~~P~ 392 (426)
|..++|+-|+.+|++|+|.|| ++|+
T Consensus 261 rli~~~~fd~~lpe~f~k~~~--nv~~ 285 (399)
T PHA02764 261 RLIQTMSFDKVLPEKFSKINP--NVLL 285 (399)
T ss_pred HHHHHHHhhhhchHHHhccCC--Ccee
Confidence 999999999999999999997 7898
No 42
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.87 E-value=1.9e-19 Score=172.82 Aligned_cols=286 Identities=14% Similarity=0.080 Sum_probs=226.2
Q ss_pred HHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHH------HHhhCCCCCCchhhHHHHHhchhHH
Q 014358 66 LVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAE------LASRFPAVVGGAYLYAYTAFNELTA 139 (426)
Q Consensus 66 ~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~e------l~~~~p~~~Gg~y~~~~~~~g~~~g 139 (426)
.....+++++|+|++..|.. +|+..++.++++.+++++..+.... +.++.|+ .+.++++++.+||..|
T Consensus 8 w~~~l~gt~IGaGiL~LP~~----ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~--~~i~~~~~~~fGk~~G 81 (397)
T TIGR00814 8 WMLGLYGTAIGAGVLFLPIQ----AGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPC--EDITEVVEEHFGKNWG 81 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CCHHHHHHHHcCHHHH
Confidence 44567788899999999986 4556788888888887777776666 4555554 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhh
Q 014358 140 FLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGES 219 (426)
Q Consensus 140 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 219 (426)
.+.++.|++........++....+.+.+.+. .....+.|.+ .+..+++++....++..|.|..
T Consensus 82 ~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~--~~~~~~~p~~---------------~i~~lilv~il~~iv~~G~~~i 144 (397)
T TIGR00814 82 ILITLLYFFAIYPILLIYSVAITNDSASFLV--NQLGTAPPLR---------------GLLSLALILILVAIMSFGEKLL 144 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCCcHH---------------HHHHHHHHHHHHHHHHhcHHHH
Confidence 9999999999999988888888877776543 1122223322 3567777777789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccCCC--CCCCCchHHHHHHHHHHHHHhhhHHHHhhhh----hhhCCC---CC
Q 014358 220 SVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS--PFAPNGFKEILTGATVVFFAYVGFDAVANSA----EESKKP---QR 290 (426)
Q Consensus 220 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~----~E~k~p---~k 290 (426)
.|++.++...+++.++.+.+..+.+.|.++.. |...+.+.+.+.++....|+|.|+|..+.++ +|.+|| +|
T Consensus 145 ~r~~~il~~~~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~ 224 (397)
T TIGR00814 145 FKIMGPLVFPLVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAER 224 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHH
Confidence 99999999999999999999988888877774 3223456789999999999999999999998 666654 57
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC----CC-hHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 291 DLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE----DA-PLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQS 365 (426)
Q Consensus 291 ~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s 365 (426)
+..|.+..+..+..++|+...+++.+..+++++.+ +. .+....+....+....+..+...++...+..+...+..
T Consensus 225 k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~ 304 (397)
T TIGR00814 225 KCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAR 304 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 78999999999999999999999999999888643 22 22233345667777777778888888888888888888
Q ss_pred HHHHHhHhc
Q 014358 366 RLYLGLGRD 374 (426)
Q Consensus 366 R~l~~~a~d 374 (426)
..+..+-++
T Consensus 305 e~l~~l~~~ 313 (397)
T TIGR00814 305 EGLNGIVLN 313 (397)
T ss_pred HHHHHHHHH
Confidence 888887743
No 43
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.9e-20 Score=177.20 Aligned_cols=347 Identities=19% Similarity=0.227 Sum_probs=269.1
Q ss_pred ccccChHHHHHH-HhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhc
Q 014358 58 LRRLGLFELVLI-GVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (426)
Q Consensus 58 ~r~l~~~~~~~l-~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g 135 (426)
+-+++||+..+. ++-++.|.-+|.+.+++++.+|-. .++...++..++..++++..-++++-..|+||.|..++|.+|
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~slg 106 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSLG 106 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEeccc
Confidence 447899887755 677889999999999999999987 888889999999999999999999988879999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhh
Q 014358 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (426)
Q Consensus 136 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (426)
+.+|...|..|.++..+..+.+...+++.+..++. +...+.. .-++.+.+++...+|..|
T Consensus 107 ~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~-------~~s~~~i-------------~gi~~vt~~ill~i~~ag 166 (643)
T KOG2083|consen 107 PEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFE-------TESKEMI-------------DGIGSVTVLILLAINVAG 166 (643)
T ss_pred ccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHH-------hccHHHh-------------cchhHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999776 2233322 227777888888899999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhccccc--------------ccCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhh
Q 014358 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEVD--------------VSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANS 281 (426)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~ 281 (426)
+++..|.|.++..+.++.+.-..+..+...+ .+|..|-...+ ..|+..+..-+-+.+|.-+.+++
T Consensus 167 ~~w~~k~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~-~tfF~vf~vfFpaatgilaG~ni 245 (643)
T KOG2083|consen 167 VEWEAKLQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPG-YTFFSVFAVFFPAATGILAGANI 245 (643)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCC-CceEeeeeeecchhhhhhccccc
Confidence 9999999999988888777777776665321 11111111112 24555555556688899999999
Q ss_pred hhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-----CC----hHHHHHHHcC-hhHHHHHHHHHHHH
Q 014358 282 AEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-----DA----PLSDAFASRG-LKYVSVLISFGAVA 351 (426)
Q Consensus 282 ~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~-~~~~~~~~~~~~~~ 351 (426)
+++.|+|++++|++...+......+|+..........-.+.++. .+ .+.+-++... -......+..+...
T Consensus 246 sGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~ 325 (643)
T KOG2083|consen 246 SGDLKDPQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILA 325 (643)
T ss_pred cCCCCCchhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHH
Confidence 99999999999999999999999999988777665443333221 11 1222222111 11223345666777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcCCCc--hhhhhhcCCCCCchHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhc
Q 014358 352 GLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLLV 425 (426)
Q Consensus 352 s~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~ 425 (426)
+.+.+..+.+..+.++++++.+|+..| -++.|-..+.+.|.++..++...+..++.+.+.+.+..+.+...+.+
T Consensus 326 a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~s 401 (643)
T KOG2083|consen 326 AELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLS 401 (643)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhh
Confidence 788888899999999999999999999 57777666678999999999999988888887776666666555543
No 44
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.84 E-value=2.2e-17 Score=155.99 Aligned_cols=286 Identities=19% Similarity=0.304 Sum_probs=251.7
Q ss_pred ccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchhHH
Q 014358 60 RLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTA 139 (426)
Q Consensus 60 ~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g 139 (426)
|+|.+|...+.+...+|.++...|+...+.+| ++|++.++++++.....+.+..+.+++|+ ...+++.++.+||+.|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~--~~l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPG--KTLVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHhCcHHH
Confidence 57899999999999999999999999988886 99999999999999999999999999999 7899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhh
Q 014358 140 FLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGES 219 (426)
Q Consensus 140 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 219 (426)
...+..+.+.+....+.....+++.++..+. | ++|.| ++...+++.+.+....|.+..
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l--p----~TP~~----------------~i~~~~ll~~~y~a~~G~e~i 135 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYLL--P----ETPIW----------------VIILLFLLVAAYAARKGIEVI 135 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C----cCCHH----------------HHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999999999999999888532 2 66664 577788888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhhhhhhCCCCCChhHHHHHH
Q 014358 220 SVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGS 299 (426)
Q Consensus 220 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~ 299 (426)
+|...+...+.++..+.+.+......|.+|..|..++|+.+++.+.....+.|.|.|....+.+.+|||+ +..|....+
T Consensus 136 ~R~~~~~~~~~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~k~~~~~ 214 (320)
T PF03845_consen 136 ARVAEILFPIFLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK-KLKKSLLIA 214 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHH
Confidence 9999999988888888888888888899999999999999999999999999999999999999999974 578999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014358 300 LLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLK----YVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (426)
Q Consensus 300 ~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ 371 (426)
...++++|....+...+..++++.+. ..|..+..+...-+ -...++....+.+.+......++++++.+..+
T Consensus 215 ~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 291 (320)
T PF03845_consen 215 ILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQL 291 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877654 56888877654322 35556667777778888888888888887765
No 45
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.80 E-value=3.9e-16 Score=147.95 Aligned_cols=304 Identities=16% Similarity=0.124 Sum_probs=229.6
Q ss_pred hhhhhcchhhhchHHhhhhcCc--h-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchhHHHHHHHHHH
Q 014358 71 VGASVGAGIFVVTGTVARDAGP--G-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLM 147 (426)
Q Consensus 71 ~~~~ig~gi~~~~~~~~~~~G~--~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~ 147 (426)
++--+|+|.+..|...-+.+|. . ++++|+++++..-..+.+ ..|+ .||.|++.++.+||..|++.+|..+
T Consensus 5 FamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~-~gG~~~~l~~~~g~~f~~lf~~~~~ 77 (378)
T TIGR00796 5 FALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALAL-VGGGYDSLSARIGKVFGILFTVILY 77 (378)
T ss_pred HHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeee-cCCCHHHHHHHhChHHHHHHHHHHH
Confidence 4445899999999988888874 3 788999999988777776 8888 8999999999999999999999977
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhhHHH
Q 014358 148 LDYHIGA-----ASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVL 222 (426)
Q Consensus 148 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 222 (426)
+..-... +......+ +.. .++. ... .....+..+++..++.++++++.|...++
T Consensus 78 l~iGP~~aiPRtaa~s~e~~--i~p---~~~~---~~~-------------~~~l~i~siiff~i~~~l~~~~~k~~~~i 136 (378)
T TIGR00796 78 LTIGPLFAIPRTATVSFEMG--IAP---LLHS---PTS-------------LLALFIFSLIFFAVVLLLSLNPSKLIDRV 136 (378)
T ss_pred HHHHhchhhhHHHHHHHHHH--HHh---ccCc---ccc-------------hHHHHHHHHHHHHHHHHHHcCcccHHHHh
Confidence 6543332 22222222 222 2121 000 01114566777777888999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCch-HHHHHHHHHHHHHhh-------hHHHHhhhhh-hhCCCCCChh
Q 014358 223 NSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGF-KEILTGATVVFFAYV-------GFDAVANSAE-ESKKPQRDLP 293 (426)
Q Consensus 223 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------G~e~~~~~~~-E~k~p~k~~p 293 (426)
+++++.++++.++.+++.++.+...+.-.+..+..- ..+..++....++++ |+-.+..+.+ |.|||+|..|
T Consensus 137 Gk~LTP~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~ 216 (378)
T TIGR00796 137 GKFLTPALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITK 216 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999987643322111111111 358888999999999 9999999998 9999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhcccccccC----CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 294 IGILGSL-LICAALYVGVSLVLTGMVPYKFLD----EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 368 (426)
Q Consensus 294 ~ai~~~~-~~~~v~y~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l 368 (426)
+.+..++ ......|+...++..+..+.+++. .++...++.++..|+.+..++.+.+.++++++.++...++++.
T Consensus 217 ~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~- 295 (378)
T TIGR00796 217 YTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEY- 295 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999 777788888888888877765443 2346666778888899999999999999999999999997765
Q ss_pred HHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhhCHHHHHHH
Q 014358 369 LGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHI 417 (426)
Q Consensus 369 ~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~l 417 (426)
|+|.++ ++|+.+.++...+...+......+.+.++
T Consensus 296 ------------f~~~~~--k~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~ 330 (378)
T TIGR00796 296 ------------FHKLVP--KLSYKTWVIVFTLFSFIVANLGLTQIISI 330 (378)
T ss_pred ------------HHHhcC--CCCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 556655 39999888888777777666666666653
No 46
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.79 E-value=1.3e-15 Score=146.70 Aligned_cols=293 Identities=17% Similarity=0.180 Sum_probs=241.5
Q ss_pred cccChHHHHHHHhhhhhcchhhhchHHhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchh
Q 014358 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNEL 137 (426)
Q Consensus 59 r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~-~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~ 137 (426)
|+-+.+...++.+|+.+|+|++.+|-.... +|- ...+..++++.++...++.++|...+.|+ +.+.-..++|.+||.
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~-~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAG-AGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-GSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhChH
Confidence 455778889999999999999999987655 554 58888899999999999999999999999 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhh
Q 014358 138 TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVG 217 (426)
Q Consensus 138 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (426)
.+++.+..|.+.......++....++.+...+... .+.+.++ .....++.++...+.+.|.|
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~--~~~~~~~----------------~~~~~~f~~i~~~iv~~g~~ 140 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQ--LGTDLSP----------------WLSSLLFTIIFGGIVYFGTK 140 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHh--cCCCCcH----------------HHHHHHHHHHHHHHHHhhHH
Confidence 99999999999888888899999999888865511 1112222 34566677777778889999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCC--CCCchHHHHHHHHHHHHHhhhHHHHhhhhhhhCCCCCChhHH
Q 014358 218 ESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPF--APNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIG 295 (426)
Q Consensus 218 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~a 295 (426)
...|++.++...+++.++.+.+..+.+.+.++.... .+..+...+..+...+++|.-...++.+....++-+|+++|+
T Consensus 141 ~v~~~n~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~a 220 (394)
T PF03222_consen 141 AVDRINRVLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKA 220 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHH
Confidence 999999999999999999999999988887776552 235677888999999999999999999999999777889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCC----C---ChHHHHHHH-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 296 ILGSLLICAALYVGVSLVLTGMVPYKFLDE----D---APLSDAFAS-RGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (426)
Q Consensus 296 i~~~~~~~~v~y~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~ 367 (426)
+..+..+..++|++..+++.+..|.++..+ + +++....+. .++++...+..+...++..++..+...+..+.
T Consensus 221 i~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~ 300 (394)
T PF03222_consen 221 IIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDF 300 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999898877532 2 234444443 55677788888888888888888888887777
Q ss_pred HHHh
Q 014358 368 YLGL 371 (426)
Q Consensus 368 l~~~ 371 (426)
+...
T Consensus 301 l~d~ 304 (394)
T PF03222_consen 301 LADL 304 (394)
T ss_pred HHHH
Confidence 6543
No 47
>PRK10483 tryptophan permease; Provisional
Probab=99.73 E-value=8.7e-15 Score=139.70 Aligned_cols=297 Identities=12% Similarity=0.029 Sum_probs=236.3
Q ss_pred CcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHh
Q 014358 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (426)
Q Consensus 56 ~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~-~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~ 134 (426)
..|++.+.+...++..|+++|+|++..|-...+ .|- .+....++.++++...++.+.|...++|+ +-+.-..+++.+
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~-~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~-g~~~~tma~~~L 83 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSG-AWFFWSMAALIFTWFCMLHSGLMILEANLNYRI-GSSFDTITKDLL 83 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHc
Confidence 456789999999999999999999999886655 454 58999999999999999999999999999 889999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHh
Q 014358 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (426)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (426)
||.+..+.+..+.+-......+|....++.++..++ ..+.+.|+ .+..+++.++...+.+.
T Consensus 84 G~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~---~~~~~i~~----------------~~~~llF~~~~~~iv~~ 144 (414)
T PRK10483 84 GKGWNVVNGISIAFVLYILTYAYISASGSILHHTFA---EMSLNVPA----------------RAAGFGFALLVAFVVWL 144 (414)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH---hcCCCCcH----------------HHHHHHHHHHHHHHHHh
Confidence 999888888877777777778888889998888553 12222333 35677888888889999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCC---CCchHHHHHHHHHHHHHhhhHHHHhhhhhhhCCCCCC
Q 014358 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFA---PNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRD 291 (426)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~ 291 (426)
|.|...|++.++...+++..+..+...+.+.+.++..+.. +..+...+.++...+++|.=...++.+.++.++-+|+
T Consensus 145 gt~~vd~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~k 224 (414)
T PRK10483 145 STKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKT 224 (414)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHH
Confidence 9999999999999999999888888877776665553211 1224457788889999998888999998888865568
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccccccC----CCChH---HHHH-HHcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 292 LPIGILGSLLICAALYVGVSLVLTGMVPYKFLD----EDAPL---SDAF-ASRGLKYVSVLISFGAVAGLTTTLLVGLYV 363 (426)
Q Consensus 292 ~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~----~~~~~---~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 363 (426)
++|+++.+..+..++|++..+++.+..|++++. .++.. .... +..+.+....+..+...++..++..+...+
T Consensus 225 ir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LG 304 (414)
T PRK10483 225 IVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLG 304 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987743 22222 2233 334556777777888888888888888888
Q ss_pred HHHHHHHhHh
Q 014358 364 QSRLYLGLGR 373 (426)
Q Consensus 364 ~sR~l~~~a~ 373 (426)
....+..+-|
T Consensus 305 L~d~l~D~~k 314 (414)
T PRK10483 305 LFDYLADLFG 314 (414)
T ss_pred HHHHHHHHhC
Confidence 8887776543
No 48
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.72 E-value=1.8e-14 Score=138.25 Aligned_cols=291 Identities=16% Similarity=0.114 Sum_probs=232.0
Q ss_pred ChHHHHHHHhhhhhcchhhhchHHhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchhHHH
Q 014358 62 GLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAF 140 (426)
Q Consensus 62 ~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~-~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~ 140 (426)
+.....++..|+.+|+|++.+|-.... +|. .+....++++.++...++.++|...+.|+ +.+....+++.+||..++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~-~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~-~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAG-VGFSVTLILLIGLWALMCYTALLLLEVYQHVPA-DTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCHHHHHHHHhChHHHH
Confidence 567788899999999999999886666 565 58888888899888999999999888888 788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhhH
Q 014358 141 LVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESS 220 (426)
Q Consensus 141 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 220 (426)
+.+..|++.......+|....++.+...+. .+...+.+. ....+.+.++...+.+.|.|...
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~--~~~~~~i~~----------------~~~~l~F~~~~~~iv~~g~~~v~ 143 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSIS--DWTGISMSP----------------TAGVLLFTLVAGGVVCVGTSSVD 143 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHH--HhccCCCCh----------------HHHHHHHHHHHHHHHhccHHHHH
Confidence 999999998888889999997777777543 111112222 23455666666668888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhhhhhhCCCCCChhHHHHHHH
Q 014358 221 VLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSL 300 (426)
Q Consensus 221 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~ 300 (426)
|++.++...+++.++.+......+.+.+++... +.+....+.++....++|.=...++.+....++.+|+++|++..+.
T Consensus 144 ~~n~~L~~~~ii~~~~~~~~l~p~~~~~~L~~~-~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs 222 (403)
T PRK15132 144 LFNRFLFSAKIIFLVVMLALMMPHIHKVNLLTL-PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGS 222 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhcC-CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHH
Confidence 999999999999988888888888777776532 1111237788888999998888999999998877788999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccC----CCC---hHHHHH-HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014358 301 LICAALYVGVSLVLTGMVPYKFLD----EDA---PLSDAF-ASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (426)
Q Consensus 301 ~~~~v~y~~~~~~~~~~~~~~~~~----~~~---~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~a 372 (426)
.+..++|++...++.+..|.+++. ++. +..+.+ +....++...+..+...++..++..+...+....+..+-
T Consensus 223 ~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~ 302 (403)
T PRK15132 223 AIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLF 302 (403)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988753 222 333333 445677888888888888888888888888888887765
Q ss_pred h
Q 014358 373 R 373 (426)
Q Consensus 373 ~ 373 (426)
|
T Consensus 303 ~ 303 (403)
T PRK15132 303 Q 303 (403)
T ss_pred c
Confidence 4
No 49
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.70 E-value=5.3e-14 Score=134.21 Aligned_cols=291 Identities=12% Similarity=0.081 Sum_probs=227.0
Q ss_pred ChHHHHHHHhhhhhcchhhhchHHhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchhHHH
Q 014358 62 GLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAF 140 (426)
Q Consensus 62 ~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~-~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~ 140 (426)
+.....++..|+++|+|.+..|-...+ .|- .+....++.++++...++.+.|...++|. +-+.-..+++.+||.+..
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~-~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAG-AWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV-GSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHcChHHHH
Confidence 667788999999999999999886655 454 58999999999999999999999999999 889999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhhH
Q 014358 141 LVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESS 220 (426)
Q Consensus 141 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 220 (426)
+.+..+.+-......+|....++.++..++. ..+.+.+. ....+++.++...+.+.|.|...
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~--~~~~~i~~----------------~~~~llF~~~~~~~v~~gt~~vd 149 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISM--NLGYHANP----------------RIVGICTAIFVASVLWISSLAAS 149 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhh--hccCCCcH----------------HHHHHHHHHHHHHHHHhchhHHH
Confidence 8888887777777888888889988886541 11112222 34567888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccCCCCCC--CCc---hHHHHHHHHHHHHHhhhHHHHhhhhhhhCCCCCChhHH
Q 014358 221 VLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFA--PNG---FKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIG 295 (426)
Q Consensus 221 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~a 295 (426)
|++.++...+++..+..+.....+.+.++..+.. ... +...+.++...+++|.=...++.+....++-.|+++|+
T Consensus 150 ~~nr~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~ka 229 (415)
T PRK09664 150 RITSLFLGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKS 229 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHH
Confidence 9999999999999888888887777666554321 111 33467788888888887888888888887666789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccC----CCChHHH----HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 296 ILGSLLICAALYVGVSLVLTGMVPYKFLD----EDAPLSD----AFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (426)
Q Consensus 296 i~~~~~~~~v~y~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~ 367 (426)
++.+..+..++|++...++.+..|++++. ++....+ ..+...+++...+..+...++..++..+...+....
T Consensus 230 Il~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~ 309 (415)
T PRK09664 230 VVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDY 309 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887753 2222222 223445667777777777788888777777777776
Q ss_pred HHHhH
Q 014358 368 YLGLG 372 (426)
Q Consensus 368 l~~~a 372 (426)
+..+-
T Consensus 310 l~D~~ 314 (415)
T PRK09664 310 LADLF 314 (415)
T ss_pred HHHHh
Confidence 66653
No 50
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.68 E-value=1.6e-13 Score=131.07 Aligned_cols=287 Identities=12% Similarity=0.063 Sum_probs=224.7
Q ss_pred HHHhhhhhcchhhhchHHhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCCchhhHHHHHhchhHHHHHHHH
Q 014358 68 LIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRF-PAVVGGAYLYAYTAFNELTAFLVFAQ 145 (426)
Q Consensus 68 ~l~~~~~ig~gi~~~~~~~~~~~G~-~~~~~~il~~~~~~~~~~~~~el~~~~-p~~~Gg~y~~~~~~~g~~~g~~~g~~ 145 (426)
...+|+.+|+|++.+|-.... +|. ..++..++++.++......++|..... |. +.+.-+.+++.+||.++.+.+..
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~-~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~-~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGF-GGLIPILLMLVLAYPIAFYCHRALARLCLSGSNP-SGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCHHHHHHHHcChhHHHHHHHH
Confidence 556788899999999886555 565 588888999999999999999999998 55 67889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccc-CCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 014358 146 LMLDYHIGAASIARSLASYVVSILELFPFFKE-NIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNS 224 (426)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 224 (426)
|++.......+|.....+.+.+.+. .+.+. +.+. .+..+++.++...+...|.|..-|++.
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~--~ql~~~~~~r----------------~l~slifv~~l~~iv~~G~~~v~kv~~ 165 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWE--NQLGFAPLNR----------------GFVALFLLLLMAFVIWFGKDLMVKVMS 165 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hhcCcCCccH----------------HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999888888888777777666322 11111 1122 467888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccccCCCCCC----CC----c-hHHHHHHHHHHHHHhhhHHHHhhhhhh----hC-----
Q 014358 225 CMTVVKVIIVIVVIFAGAFEVDVSNWSPFA----PN----G-FKEILTGATVVFFAYVGFDAVANSAEE----SK----- 286 (426)
Q Consensus 225 ~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~----~~----~-~~~~~~~~~~~~~~~~G~e~~~~~~~E----~k----- 286 (426)
++...+++.++.+.+..+.+.+.++..... ++ + ....+.++....++|.=...++.++.. .+
T Consensus 166 ~Lv~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~ 245 (443)
T PRK13629 166 YLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGR 245 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcccccc
Confidence 999999999999999999988877765321 11 1 134777888888888766666665555 32
Q ss_pred C-CCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC----CCCh-HHHHHHHcCh---------hHHHHHHHHHHHH
Q 014358 287 K-PQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD----EDAP-LSDAFASRGL---------KYVSVLISFGAVA 351 (426)
Q Consensus 287 ~-p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~ 351 (426)
| .+|+..|++..+..+..++|++..+.+.+..|++++. ++.+ +....+...+ +....+..+...+
T Consensus 246 ~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~ 325 (443)
T PRK13629 246 DFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALV 325 (443)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHH
Confidence 2 2477999999999999999999999999999999864 3445 5555555554 5667777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhc
Q 014358 352 GLTTTLLVGLYVQSRLYLGLGRD 374 (426)
Q Consensus 352 s~~~~~~~~~~~~sR~l~~~a~d 374 (426)
+...+..+...+..-.+..+.++
T Consensus 326 AI~TSFlGv~LGl~E~l~gl~~~ 348 (443)
T PRK13629 326 AIFKSFFGHYLGTLEGLNGLILK 348 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887753
No 51
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.68 E-value=2.1e-13 Score=132.33 Aligned_cols=295 Identities=16% Similarity=0.140 Sum_probs=231.1
Q ss_pred CcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-CchhhHHHHH
Q 014358 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVV-GGAYLYAYTA 133 (426)
Q Consensus 56 ~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~-Gg~y~~~~~~ 133 (426)
..+++.+..+......++.+|+|++..|-.. ..+|-. .+...++++.++....+++.|...+.|+ . .+.+.-+++.
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~-~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~-~~~~~~~~~~~~ 81 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAF-GGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN-GKASITSLVEDY 81 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcccHHHHHHHH
Confidence 4567788889999999999999999988744 446664 8999999999999999999999999999 6 4999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHH
Q 014358 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (426)
Q Consensus 134 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (426)
+||.++++.+..+.+.......++....++.+...+. ..++.+ + + ...+..+++......+.+
T Consensus 82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~--~~~~~~-~-~-------------~r~~~~lif~~~~~~l~~ 144 (415)
T COG0814 82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLG--NQFGLN-P-L-------------PRKLGSLIFALVLAFLSW 144 (415)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH--hhcccC-C-c-------------chHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888654 111111 1 1 115667777777777999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCC--C-CCchHHHHHHHHHHHHHhhhHHHHhhhhhhhCCCCC
Q 014358 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPF--A-PNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQR 290 (426)
Q Consensus 214 ~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k 290 (426)
.+.+..-|....+...+++.++++......+.+.++.... . +..+..++.++....++|.+......+..|.|+++|
T Consensus 145 ~~~~~~lk~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~ 224 (415)
T COG0814 145 LGTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSK 224 (415)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchh
Confidence 9999999999999999999999999988887766555332 2 355678999999999999999999999999998877
Q ss_pred C-hhHHHHHHHHHHHHHHHHHHHHHHhcccccccC-------CCChHHHHHHH-cChhHHHHHHHHHHHHHHHHHHHHHH
Q 014358 291 D-LPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-------EDAPLSDAFAS-RGLKYVSVLISFGAVAGLTTTLLVGL 361 (426)
Q Consensus 291 ~-~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~ 361 (426)
+ ++|++..+..+..++|+...+....+++.+..+ +.......... ...+.......+...++..++..+..
T Consensus 225 ~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~ 304 (415)
T COG0814 225 KAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVY 304 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCch
Confidence 7 999999999999999999999999988877432 12233333333 34444555556666666655544444
Q ss_pred HHHHHHHH
Q 014358 362 YVQSRLYL 369 (426)
Q Consensus 362 ~~~sR~l~ 369 (426)
...=..+.
T Consensus 305 lg~~~~~~ 312 (415)
T COG0814 305 LGLFEGLA 312 (415)
T ss_pred hhHHHhhh
Confidence 44333333
No 52
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=99.54 E-value=1.4e-11 Score=117.36 Aligned_cols=291 Identities=19% Similarity=0.222 Sum_probs=200.1
Q ss_pred cccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC------CchhhHH
Q 014358 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVV------GGAYLYA 130 (426)
Q Consensus 57 l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~------Gg~y~~~ 130 (426)
.++++|.++.++.++++.+|.|-......++..+||+++.-+.+.+++...+.++=+-|+.+|.+++ ||+..|.
T Consensus 15 ~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi 94 (416)
T PF01235_consen 15 EEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYI 94 (416)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHH
Confidence 4468999999999999999999999999999999998444444556777788888888888887532 7899999
Q ss_pred HHHhch-hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHH
Q 014358 131 YTAFNE-LTAFLVFAQLMLDYHIG-AASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALL 208 (426)
Q Consensus 131 ~~~~g~-~~g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (426)
++.+|. +++.+.+.+...++... +..+....++.+...++ .|. .+.++++.+++
T Consensus 95 ~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~--------i~~----------------~~~gi~l~~l~ 150 (416)
T PF01235_consen 95 EKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFG--------IPP----------------WITGIILAILV 150 (416)
T ss_pred HHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc--------ccH----------------HHHHHHHHHHH
Confidence 999885 45556665544444443 55566666665555322 232 35677788888
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCC---------CCCCCc----hHHHHH------HHHHHH
Q 014358 209 TIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS---------PFAPNG----FKEILT------GATVVF 269 (426)
Q Consensus 209 ~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~---------~~~~~~----~~~~~~------~~~~~~ 269 (426)
.++..-|+|..+|+...+..++.+..++..+..+.. +.++.+ .|.++. ..+... ++.=.+
T Consensus 151 ~~vi~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~-n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~ 229 (416)
T PF01235_consen 151 ALVIFGGIKRIAKVSEKLVPFMAILYILGGLIIIII-NIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGL 229 (416)
T ss_pred HHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhh
Confidence 888999999999999999999988888877766543 222222 122222 211111 222223
Q ss_pred HHh---hhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccc---ccCCCChHHHHHHHcChhHHHH
Q 014358 270 FAY---VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYK---FLDEDAPLSDAFASRGLKYVSV 343 (426)
Q Consensus 270 ~~~---~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 343 (426)
|+- .|....+|-+.|+++|.|.--.++.-.++-+.++..+..+.+...-.+. +.+...-...+++...+++...
T Consensus 230 fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~ 309 (416)
T PF01235_consen 230 FSNEAGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPY 309 (416)
T ss_pred ccCCCCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHH
Confidence 322 5777778888899999876666666666656666666666555432222 1222222344566656688889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014358 344 LISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (426)
Q Consensus 344 ~~~~~~~~s~~~~~~~~~~~~sR~l~~~a 372 (426)
++.+++++-.+++.+++.+.+.|.+.-+-
T Consensus 310 ~v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 310 FVAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999888765
No 53
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.47 E-value=3.7e-10 Score=108.26 Aligned_cols=287 Identities=17% Similarity=0.242 Sum_probs=183.7
Q ss_pred cccChHHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCC-C-----CchhhHHH
Q 014358 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAV-V-----GGAYLYAY 131 (426)
Q Consensus 59 r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~-~-----Gg~y~~~~ 131 (426)
++++.++.++.+++.++|.|-......++..+||+ ..|.|+. +++...+.+.-.-++.++.++ + ||+-.|.+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~-allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVT-AFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHH-HHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 56999999999999999998555555568889998 5666655 455556666666666666521 1 34446777
Q ss_pred HHhc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHH
Q 014358 132 TAFN-ELTAFLVFAQLMLDY-HIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (426)
Q Consensus 132 ~~~g-~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (426)
+.++ |++|.+.+.. .+.+ ...+..+....++.++..+ +.|. .+.++++.++..
T Consensus 124 ~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~--------~~~~----------------~v~~i~l~~l~~ 178 (425)
T TIGR00835 124 KGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF--------NVPK----------------LVTGIVLTVLTA 178 (425)
T ss_pred HHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc--------CCcH----------------HHHHHHHHHHHH
Confidence 7655 7888887777 4444 4456677777777776522 2233 345667777777
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC---------CCCCch-HHHH---------HHHHHHHH
Q 014358 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP---------FAPNGF-KEIL---------TGATVVFF 270 (426)
Q Consensus 210 ~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~---------~~~~~~-~~~~---------~~~~~~~~ 270 (426)
++..-|+|...|+...+..++.+..+...+..+. .+.+|..| |.++.. .++. .++.=..|
T Consensus 179 ~vi~GGik~Ia~v~~~lvP~m~~~Y~~~~l~ii~-~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~f 257 (425)
T TIGR00835 179 LIIFGGLKRIAKISSVVVPFMALLYVIMALYIII-MNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLF 257 (425)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHh
Confidence 7777799999999999999888887666553333 23333332 222211 1111 12222334
Q ss_pred Hh---hhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccc---ccCCCChHH-HHHHHcChhHHHH
Q 014358 271 AY---VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYK---FLDEDAPLS-DAFASRGLKYVSV 343 (426)
Q Consensus 271 ~~---~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~ 343 (426)
+- .|....+|-+.|+++|.|.--.++.-.++-+.++..+..+.+...-.++ +++ +..+. .+++...++++..
T Consensus 258 SNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~-g~~lt~~af~~~~g~~g~~ 336 (425)
T TIGR00835 258 SNEAGMGSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLS-GAQLTQQALSYGLGSFGAV 336 (425)
T ss_pred ccccccCcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCc-HHHHHHHHHHHHhhhhHHH
Confidence 32 4666677778888899776555555555545555555555444332222 112 22233 3455544567888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 014358 344 LISFGAVAGLTTTLLVGLYVQSRLYLGLGR 373 (426)
Q Consensus 344 ~~~~~~~~s~~~~~~~~~~~~sR~l~~~a~ 373 (426)
++.+++++-.+++.+++.+.+-+.+.-+-+
T Consensus 337 ~v~i~~~lFaftTii~~~yyge~~~~yl~~ 366 (425)
T TIGR00835 337 FVAVALFLFAFSTIIGWYYYGEKNAEFLKG 366 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999998877643
No 54
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=99.47 E-value=1.2e-10 Score=109.51 Aligned_cols=292 Identities=19% Similarity=0.259 Sum_probs=207.0
Q ss_pred CcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC------Cchhh
Q 014358 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVV------GGAYL 128 (426)
Q Consensus 56 ~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~------Gg~y~ 128 (426)
+.++.+|.++.++.+.++.+|+|=......+...+||+ ..|.|+. +++...+.+.=+-|+.+|.++. ||+-+
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~-Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~y 136 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIV-ALFGMATKFAESTLAQKYRVKDKDGEYRGGPAY 136 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHH-HHHHHHHHHHHHHHHhheeEeCCCCCCcCChHH
Confidence 35678999999999999999999999999999999998 6666655 6677788888888999987423 78999
Q ss_pred HHHHHhc-hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHH
Q 014358 129 YAYTAFN-ELTAFLVFAQLMLDYH-IGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLA 206 (426)
Q Consensus 129 ~~~~~~g-~~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (426)
|.++.+| |+.+.+.+....+++- ..+..+....++.++..++ .|. .+.++++.+
T Consensus 137 Yi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~--------~~~----------------~~~gi~la~ 192 (452)
T COG1115 137 YIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG--------IPP----------------LVTGIVLAL 192 (452)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC--------CcH----------------HHHHHHHHH
Confidence 9999998 5678888877777776 5788899999998888544 222 567888889
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCC---------CCCCC----chH------HHHHHHHH
Q 014358 207 LLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS---------PFAPN----GFK------EILTGATV 267 (426)
Q Consensus 207 ~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~---------~~~~~----~~~------~~~~~~~~ 267 (426)
+..++...|+|..+|+......++-+..++..+..+.. +.++.+ .|.+. |+. .+..++.=
T Consensus 193 l~~~VI~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~-n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~R 271 (452)
T COG1115 193 LVALVIFGGIKRIAKVSSKVVPFMAILYVLVALVIIVL-NISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKR 271 (452)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999988888777766655442 111111 12121 111 12223333
Q ss_pred HHHHh---hhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC--CCCh-HHHHHHHcChhHH
Q 014358 268 VFFAY---VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD--EDAP-LSDAFASRGLKYV 341 (426)
Q Consensus 268 ~~~~~---~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~ 341 (426)
..|+- .|....++.+.++++|.|.=-..+...++-..++.....+.+...-.++... ++.. ...++++..++++
T Consensus 272 GlfSNEAGmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G 351 (452)
T COG1115 272 GLFSNEAGMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWG 351 (452)
T ss_pred HhhcccccCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccH
Confidence 44433 3445556666777788665444444444434555555555555433322222 2223 3346677777899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 014358 342 SVLISFGAVAGLTTTLLVGLYVQSRLYLGLGR 373 (426)
Q Consensus 342 ~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~a~ 373 (426)
..++.+.+++-.+++.+++++..-|.+.-+-+
T Consensus 352 ~~fv~i~l~lFafTTIlg~yyyge~~~~fl~~ 383 (452)
T COG1115 352 SYFVAIALFLFAFTTILGWYYYGEKNIEFLFG 383 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999887753
No 55
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.22 E-value=8.8e-09 Score=99.63 Aligned_cols=281 Identities=16% Similarity=0.094 Sum_probs=191.8
Q ss_pred CCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc-----hh
Q 014358 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGG-----AY 127 (426)
Q Consensus 54 ~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg-----~y 127 (426)
....+|+.++++..+-.++.++|.|+..+| .+....|.. .+...++.+++.+.+++.+.++-+..+. -.| +-
T Consensus 31 ~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP-~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~-~~~~r~~~Y~ 108 (437)
T KOG1303|consen 31 PITPSRGGSWWQAAFHIINALIGAGVLSLP-YALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEA-VPGKRRYRYP 108 (437)
T ss_pred ccccCCCCcceehhhheehhhhhhhhhhhH-HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCccCCChH
Confidence 334577899999999999999999998888 566668886 6889999999999999989998888887 566 77
Q ss_pred hHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccC--CCccccCCCccccccchhhHHHHHHHH
Q 014358 128 LYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKEN--IPSWIGHGGEEFLGGTLSINILAPILL 205 (426)
Q Consensus 128 ~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (426)
+..++.||++.-.++++...+.....+..+....++-+..++......... ... ..+.+..+
T Consensus 109 dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~----------------f~iif~~i 172 (437)
T KOG1303|consen 109 DLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQY----------------FIIIFGLI 172 (437)
T ss_pred HHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccee----------------hhhhHHHH
Confidence 777889998777788888888888888888888889888866522211100 111 12222222
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccc--CCCCCCCCchHHH-HHHHHHHHHHhhhHHHHhhhh
Q 014358 206 ALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS--NWSPFAPNGFKEI-LTGATVVFFAYVGFDAVANSA 282 (426)
Q Consensus 206 ~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~G~e~~~~~~ 282 (426)
.+.... .........+.....+..+.........+....-.. .-.+....+.... +.++....|+|.|.-....+.
T Consensus 173 ~~~~s~-lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq 251 (437)
T KOG1303|consen 173 VLPLSQ-LPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQ 251 (437)
T ss_pred HHHHHH-CCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehH
Confidence 222211 334445555555555555555555555555443111 1111111111122 778889999999999999999
Q ss_pred hhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHc-ChhHHHHHHHHHHHHHHHHHHHHH
Q 014358 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASR-GLKYVSVLISFGAVAGLTTTLLVG 360 (426)
Q Consensus 283 ~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~ 360 (426)
..+|+|+| ++|+.+.+..+++.+|+..++.-....+++..+ +...+. ...+.....++.+.+-.+++..-+
T Consensus 252 ~tMk~p~~-f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~------~il~s~~~p~~~~~~ani~i~~h~i~s~~i~ 323 (437)
T KOG1303|consen 252 HTMKSPPK-FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPD------NILLSLQPPTWLIALANILIVLHLIGSYQIY 323 (437)
T ss_pred hhcCCchh-hhhHHHHHHHHHHHHHHHHHHhhhhhhccccch------hhhhcccCchhHHHHHHHHHHHHHhhhhhhh
Confidence 99999987 999999999999999999998888777654332 122233 245666677777777777754333
No 56
>PLN03074 auxin influx permease; Provisional
Probab=99.21 E-value=3.5e-08 Score=97.53 Aligned_cols=244 Identities=11% Similarity=0.016 Sum_probs=141.9
Q ss_pred CCCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHH----HHHhhCCCCCCch-
Q 014358 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYA----ELASRFPAVVGGA- 126 (426)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~----el~~~~p~~~Gg~- 126 (426)
.++...+..+..+...-.+.+.+|.|++.+|.. ...+|.. .++..++.+++..-+++.+. |..++.|+ .+-.
T Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~vG~GILaLP~A-f~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~-~~~~~ 115 (473)
T PLN03074 38 LKSLLWHGGSVYDAWFSCASNQVAQVLLTLPYS-FSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKER-EKVDF 115 (473)
T ss_pred eeecccCCchHHHHHHHHHHHHHhHHHHhHHHH-HHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-CCCch
Confidence 344455667777777778889999999988774 5557764 67777777777666666554 55666665 3321
Q ss_pred -------hhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHH
Q 014358 127 -------YLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINI 199 (426)
Q Consensus 127 -------y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (426)
.+-..+.+||.++.+......+........+....++-+.. +.+. .+...|. .+
T Consensus 116 ~~~~~~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~---l~~~--~~~~~~~--------------~i 176 (473)
T PLN03074 116 KNHVIQWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYY---INDN--LDKRTWT--------------YI 176 (473)
T ss_pred hHHHHHHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhh---hCCC--cCCCeEE--------------ee
Confidence 22334468988877765555544444444444433332222 1110 0112221 12
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCchHHHHHHHHHHHHHhhhHHHHh
Q 014358 200 LAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVA 279 (426)
Q Consensus 200 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~ 279 (426)
...+.+. .. -....|..+++..+.....+...+.+.+......+...++.-.+.++..++.++...+|+|.|.-...
T Consensus 177 ~~~v~~~-~~--~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~ 253 (473)
T PLN03074 177 FGACCAT-TV--FIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTV 253 (473)
T ss_pred hHHHHHH-HH--HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHH
Confidence 2222222 11 23345555555544444333333333333333322222221113345567777778999999999999
Q ss_pred hhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 014358 280 NSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYK 321 (426)
Q Consensus 280 ~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~ 321 (426)
.+-.|+|||+ +.++....+...+..+|+...+..+...+++
T Consensus 254 ~I~~~M~~P~-~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~ 294 (473)
T PLN03074 254 EIMHAMWKPQ-KFKYIYLAATLYVLTLTLPSAAAVYWAFGDE 294 (473)
T ss_pred HHHHhccChh-cccchHHHHHHHHHHHHHHHHHeeeeeechh
Confidence 9999999995 5898888888888888888766666555543
No 57
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.17 E-value=3.9e-08 Score=93.85 Aligned_cols=287 Identities=15% Similarity=0.130 Sum_probs=178.3
Q ss_pred CCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCch-H-HHHHHHHHHH---HHHHHHHHHHHHhhCCCC-------
Q 014358 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-V-TISFLLAGAA---SVLNALCYAELASRFPAV------- 122 (426)
Q Consensus 55 ~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~-~~~~il~~~~---~~~~~~~~~el~~~~p~~------- 122 (426)
++.++..+..+...--+-+++|+|++..|. +...+|.. . +...+++.+. .....-+.-+++++..+.
T Consensus 41 ~~~~~~~s~~~tl~hl~k~~iGtG~l~lP~-AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~ 119 (449)
T KOG1304|consen 41 RDREHPTSATQTLIHLLKGSIGTGILSLPL-AFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAET 119 (449)
T ss_pred ccCCCCCchHHHHHHHHHhhhccccccChH-HHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHH
Confidence 334456888888888888899999988876 45557753 3 3333444333 234555666677665320
Q ss_pred -----CCchhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhh
Q 014358 123 -----VGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSI 197 (426)
Q Consensus 123 -----~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (426)
.+|+- | .|.+||...+++-....+++.-.+..+..-.++-++.+++ .. ....+
T Consensus 120 ~~~a~~~~~~-~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~---~~--~~~~~--------------- 177 (449)
T KOG1304|consen 120 AESAMEGGPG-W-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVD---EH--SPGVL--------------- 177 (449)
T ss_pred HHHHHcCCcH-H-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHh---cc--CCCCc---------------
Confidence 12333 4 6778999999999999999998888888888888888544 10 11111
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-cccCCCCCC-CCchHHHHHHHHHHHHHhhhH
Q 014358 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-DVSNWSPFA-PNGFKEILTGATVVFFAYVGF 275 (426)
Q Consensus 198 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~ 275 (426)
.....+++.+...+...-+|..+++.-.....-++.++.+.+...... +.....+.. -.++.++-..+..++|+|-|.
T Consensus 178 s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGi 257 (449)
T KOG1304|consen 178 SVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGI 257 (449)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccc
Confidence 122222222333333334444555444444444444444433332221 111221111 134678888999999999999
Q ss_pred HHHhhhhhhhCCCCCChh---HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHHHHHHHHH
Q 014358 276 DAVANSAEESKKPQRDLP---IGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAG 352 (426)
Q Consensus 276 e~~~~~~~E~k~p~k~~p---~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 352 (426)
-.+--+=+++|+|+ ++| +.+-.++.+++++|...-+.-+...+++.-.. +.-+....++...+.+...+.
T Consensus 258 g~VLPlEn~Mk~P~-~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~s------ITLNLP~~~l~~~Vkl~~ai~ 330 (449)
T KOG1304|consen 258 GMVLPLENSMKKPQ-KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGS------ITLNLPQEILSQTVKLLLAIA 330 (449)
T ss_pred eEEEehhhcccChh-hcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccce------EEecCCccHHHHHHHHHHHHH
Confidence 99999999999995 588 99999999999999988888777776554322 001111234445556666666
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 014358 353 LTTTLLVGLYVQSRLYLGL 371 (426)
Q Consensus 353 ~~~~~~~~~~~~sR~l~~~ 371 (426)
.+-+.--.++..-++++.-
T Consensus 331 I~ls~pLQ~yv~~eIi~~~ 349 (449)
T KOG1304|consen 331 IFLTYPLQFYVPIEIIEPG 349 (449)
T ss_pred HHHcCchhhhhhHHHHHHh
Confidence 6666666777777777763
No 58
>PTZ00206 amino acid transporter; Provisional
Probab=99.16 E-value=1.2e-07 Score=93.97 Aligned_cols=245 Identities=14% Similarity=0.142 Sum_probs=155.7
Q ss_pred ChHHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchhHHH
Q 014358 62 GLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAF 140 (426)
Q Consensus 62 ~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~ 140 (426)
+..+..+-.+.+++|+|++..|... ..+|.. .++..++.+++.......+.+.+.+.+. -.+.+-.++.+||+..+
T Consensus 61 g~~~s~fnL~~~~iGaGILsLP~Af-~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~--~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 61 GIAASAFNIASSTVGAGIVGLPSAA-NSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNI--RTYEGVARVLLGPWGSY 137 (467)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHhCHHHHH
Confidence 4456666677778999999987754 457764 7777777777777777777777766433 57777777889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhhH
Q 014358 141 LVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESS 220 (426)
Q Consensus 141 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 220 (426)
++.+..++..+..+.++....++.+...+... +.+++....+ .......++..+ +..-+...+.++..+
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~-----~~~~~~~~~~----~~r~~~~~i~~~--i~lPLs~~r~i~~L~ 206 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGT-----NAPDFLKQKS----GNRLLTSLMWLC--FMLPLVIPRHIDSLR 206 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----Cccchhhhcc----CcEEeeeehhhh--HhhhcccccchHHHH
Confidence 99999999888888999999999888754311 1111110000 000000111111 122222345556666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccCCCC------------CCCCchHHHHHHHHHHHHHhhhHHHHhhhhhhhCCC
Q 014358 221 VLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP------------FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKP 288 (426)
Q Consensus 221 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p 288 (426)
++..+.....+...+.+++........++.++ .++. ......++....|+|.+.........|+|||
T Consensus 207 ~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~algi~~faF~~h~~~~~i~~~M~~~ 285 (467)
T PTZ00206 207 YVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNS-GNRAIEGLGVFIFAYVFQITAYEVYMDMTNR 285 (467)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecC-chHHHhhhhHHHhhhhhhhhhHHHHHhhccc
Confidence 66554443333222222222222111111110 1111 1257788999999999999999999999986
Q ss_pred C-CChhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 014358 289 Q-RDLPIGILGSLLICAALYVGVSLVLTGMVPYK 321 (426)
Q Consensus 289 ~-k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~ 321 (426)
. |+..+.+..++.++.++|.+..+.-+...+++
T Consensus 286 t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 286 SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 4 67889999999999999999988888776643
No 59
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=99.13 E-value=2.3e-07 Score=84.03 Aligned_cols=268 Identities=18% Similarity=0.176 Sum_probs=177.2
Q ss_pred HHHHHhhhhhcchhhhchHHhhhhcCc---hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchhHHHHH
Q 014358 66 LVLIGVGASVGAGIFVVTGTVARDAGP---GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLV 142 (426)
Q Consensus 66 ~~~l~~~~~ig~gi~~~~~~~~~~~G~---~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~ 142 (426)
..+..++.++|+| |..-..+.|..|+ .+.++.++.+++....+....|+++++.. ...-++.++.+||.++.+.
T Consensus 8 ~~f~~ig~~vGAG-fAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a--~~y~~~~~~v~~~~~~ki~ 84 (349)
T COG3949 8 WAFAFIGTVVGAG-FASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNA--TSYREILKYVSGPKFAKII 84 (349)
T ss_pred HHHHHHHHhhccc-ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHhhHHHHHHH
Confidence 4455667889999 7777778887776 28999999999999999999999999976 7888999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhh-hhhhH
Q 014358 143 FAQLMLDYHIGAASIARSL-ASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG-VGESS 220 (426)
Q Consensus 143 g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~ 220 (426)
-....+. .+..+....+. +..+...++ .|.|. -++++++....+..++ ++..-
T Consensus 85 d~~iif~-lf~~~vVM~AGags~~~e~~~--------lP~wi----------------Gali~i~~v~i~lfl~~vegi~ 139 (349)
T COG3949 85 DIIIIFF-LFSTAVVMLAGAGSLLEEMFG--------LPYWI----------------GALIIILLVLILLFLGRVEGII 139 (349)
T ss_pred HHHHHHH-HHHHHHHHhccchhHHHHHhC--------ccHHH----------------HHHHHHHHHHHHHHHhccccee
Confidence 7665554 34444444433 335655443 45552 2355555555555566 77777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccCCCC--CCCCchHHHHHHHHHHHH-HhhhHHHHhhhhhhhCCCCCChhHHHH
Q 014358 221 VLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP--FAPNGFKEILTGATVVFF-AYVGFDAVANSAEESKKPQRDLPIGIL 297 (426)
Q Consensus 221 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~G~e~~~~~~~E~k~p~k~~p~ai~ 297 (426)
+++.+...+.++.+...........+.+.++. -...+|..-..+ ...+ .....-....+++|+|++ |+..+|-.
T Consensus 140 tvn~iI~P~LIi~l~~v~~~~~f~~~~~~a~~~~~~~~~W~~~~~~--Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l 216 (349)
T COG3949 140 TVNGIITPFLIIILVLVTLSFQFTNLGNAAQIVLTKQGNWKASAVG--YGALNILVAVAVLVPLGGRMESR-KVSGIGGL 216 (349)
T ss_pred eeheeHHHHHHHHHHHHHHHHHHhhccchhhhcCCcCCChHHHHHh--hhhHHHHhHhHhhhhhccccccc-chhhhhhh
Confidence 78777777666654433333222112221221 112223211111 1111 122334456677999995 67889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 298 GSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSR 366 (426)
Q Consensus 298 ~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR 366 (426)
.+-++.+++-.+.........| +-...+-|..+++++.. +....++.+.+.+..+++..+.+++-+|
T Consensus 217 ~gglIlgvl~~l~nlsLi~~~~-~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~l~~ 283 (349)
T COG3949 217 IGGLILGVLLFLINLSLIALYD-KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYGLAS 283 (349)
T ss_pred hhhHHHHHHHHHHHHHHHhhcc-hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9989999988888888876655 22334568888888776 5666677888888888888777777544
No 60
>PRK11375 allantoin permease; Provisional
Probab=99.08 E-value=1.2e-06 Score=87.05 Aligned_cols=333 Identities=11% Similarity=0.033 Sum_probs=173.8
Q ss_pred CCCCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCc---hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhh
Q 014358 52 NDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP---GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYL 128 (426)
Q Consensus 52 ~~~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~---~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~ 128 (426)
+..++.+|+-++++.+.+=++..+....+...+..+. .|- .++++.+++.++........+.++.++.. +...
T Consensus 18 ~pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~-~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl---~~~v 93 (484)
T PRK11375 18 LPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFI-LGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGV---PFAM 93 (484)
T ss_pred CcCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHHHHHHhcccccccCC---ChhH
Confidence 3556667889999999887776655444433333333 332 25666666555555555555555544433 6777
Q ss_pred HHHHHhchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc-cccccccCCCccccCCCccccccchhhHHHHHHHHH
Q 014358 129 YAYTAFNELTAFLVFAQLM-LDYHIGAASIARSLASYVVSILE-LFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLA 206 (426)
Q Consensus 129 ~~~~~~g~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (426)
..|..||.+-+.+.+.... +..+...+.+....++.+..++. ++|.+. +.+.... ...-.....+..+++.+
T Consensus 94 ~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~-~~~~~~~-----~~g~~~~~~i~~~i~~~ 167 (484)
T PRK11375 94 ILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFL-TLGGDFT-----LLGLSLPGLITFLIFWL 167 (484)
T ss_pred hHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccccccc-----cCCCcHHHHHHHHHHHH
Confidence 8888999887777777763 45556666666666666665443 322211 1110000 00000011233445556
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCC-------chHHHHHHHHHHHHHhh-hHHHH
Q 014358 207 LLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPN-------GFKEILTGATVVFFAYV-GFDAV 278 (426)
Q Consensus 207 ~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-G~e~~ 278 (426)
+.+.+...|.|...|++.+...+.++..+...+..+...+.+......+. ....+..++...+-++. +.-..
T Consensus 168 l~~~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~ 247 (484)
T PRK11375 168 VNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSA 247 (484)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccc
Confidence 66666778999999999988887776666555554444322211111111 12345555433333333 44456
Q ss_pred hhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHH-HhcccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 014358 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVL-TGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (426)
Q Consensus 279 ~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (426)
+.++...|++| +.-++...+..+...+.....+.. ......-.....+|. +++.+........+..+.++++..++.
T Consensus 248 ~D~tRy~k~~~-~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~-~i~~~~~~~~~~~~a~l~~v~a~~~tN 325 (484)
T PRK11375 248 SDFTQNAHSFR-AQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVL-DIVQRWDSLFASFFAVLVILMTTISTN 325 (484)
T ss_pred cchhcccCChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHH-HHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 77777888864 455566655555444432222222 111111001223343 344444444555556666777777765
Q ss_pred H-HHHHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhh
Q 014358 358 L-VGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF 409 (426)
Q Consensus 358 ~-~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~ 409 (426)
. ...+.++--+. +.+||+. |+| ++.++..+++.++..+.
T Consensus 326 ~~~N~ys~~~~l~-----~l~pk~i---~~~-----~~~~i~~iig~~~~pw~ 365 (484)
T PRK11375 326 ATGNIIPAGYQIA-----ALAPTKL---TYK-----NGVLIASIISLLICPWK 365 (484)
T ss_pred HHhhcccHHHHHH-----HhCcCcc---chh-----hHHHHHHHHHHHhccHH
Confidence 4 46666655443 4566543 332 24555555555554443
No 61
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.79 E-value=6.4e-05 Score=74.39 Aligned_cols=242 Identities=12% Similarity=0.012 Sum_probs=131.1
Q ss_pred CCCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcC--c-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhH
Q 014358 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAG--P-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLY 129 (426)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G--~-~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~ 129 (426)
..++.+|+.++++.+.+=++..+...-+..-..... .| . .++++.+++.++........+..+.++-. .....
T Consensus 6 pvp~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~-~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl---~~~v~ 81 (442)
T TIGR00800 6 PVKEEERTWSFLNYFSLWLGAAFNIATWAIGALGLP-LGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGL---PFPVL 81 (442)
T ss_pred CCCcccCCccHHHHHHHHHHHhhhHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCC---Ccchh
Confidence 445566778999999887776654443333333332 23 2 36666666666666666666666666544 66778
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccccCCCccccCCCccccccchhhHHHHHHHHHHH
Q 014358 130 AYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE-LFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALL 208 (426)
Q Consensus 130 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (426)
.|..||.+-+.+.+.+.++..+...+.++...++.++.+++ .++...+..++ . .....+..+++..+.
T Consensus 82 sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~-~----------t~~~~~~~~i~~~l~ 150 (442)
T TIGR00800 82 SRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNG-M----------TTLELICFIIFWALV 150 (442)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCc-c----------cHHHHHHHHHHHHHH
Confidence 88899999999999999998888888888888887777555 22211100110 0 000012222222222
Q ss_pred H-HHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccc-ccC---CCC--CCCCchHHHHHHHHHHHHH-hhhHHHHhh
Q 014358 209 T-IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-VSN---WSP--FAPNGFKEILTGATVVFFA-YVGFDAVAN 280 (426)
Q Consensus 209 ~-~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-~~~---~~~--~~~~~~~~~~~~~~~~~~~-~~G~e~~~~ 280 (426)
. +....|.|...+.+.......++.++..+ ..+.+.+ ..+ ..+ -.+.....++.++....-. ......++.
T Consensus 151 ~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~D 229 (442)
T TIGR00800 151 LVFLFFFGYKIRHLFEWLAVVPPFAAFGMLI-WALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPD 229 (442)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchh
Confidence 2 23455656555555555444433333333 2222211 111 111 1123344566655554333 344456788
Q ss_pred hhhhhCCCCCChhHHHHHHHHHHHHHHHHHH
Q 014358 281 SAEESKKPQRDLPIGILGSLLICAALYVGVS 311 (426)
Q Consensus 281 ~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~ 311 (426)
++...|+++. ..++...+.....+...+..
T Consensus 230 ysRy~~~~~~-~~~~~~~~~~~~~~~~~~~g 259 (442)
T TIGR00800 230 FTRFGKSKKT-AIWGQFLALPGGFTLTCFFG 259 (442)
T ss_pred hhhhcCCccc-hHHHHHHHHHHHHHHHHHHH
Confidence 8888888654 45555555544444444433
No 62
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.74 E-value=6.2e-05 Score=72.75 Aligned_cols=295 Identities=13% Similarity=0.056 Sum_probs=171.1
Q ss_pred CCCCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCc-h-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhH
Q 014358 52 NDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-G-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLY 129 (426)
Q Consensus 52 ~~~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~-~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~ 129 (426)
...++.+|+.++++-+.+=++.+.-.+-+...+...+.+.. . .+++.+++.++.......-+..+.++-. .+-..
T Consensus 32 ~P~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gI---pFpv~ 108 (497)
T COG1953 32 APTPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGI---PFPVL 108 (497)
T ss_pred CCCccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCC---CchHH
Confidence 35567789999999998877766555656666656665543 3 7888888777777666666666666543 45566
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccccCCCccccCCCccccccchhhHHHHH-HHHHH
Q 014358 130 AYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE-LFPFFKENIPSWIGHGGEEFLGGTLSINILAP-ILLAL 207 (426)
Q Consensus 130 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 207 (426)
.|..||-+.+-.-...-.+.-+.....++...+..++.++. .++. |...+....+.+.-...++++ ++-++
T Consensus 109 ~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~-------~~~~~~~~~~lg~tt~~~i~F~ifW~l 181 (497)
T COG1953 109 SRASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPS-------LLIPNTLSPLLGLTTLELICFFIFWVL 181 (497)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc-------cccCCccccccCCcHHHHHHHHHHHHH
Confidence 77788877777666666666666667777777777777655 3332 111111111122222234444 44444
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCC----C---CchHHHHHHHHHH-HHHhhhHHHHh
Q 014358 208 LTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFA----P---NGFKEILTGATVV-FFAYVGFDAVA 279 (426)
Q Consensus 208 ~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~-~~~~~G~e~~~ 279 (426)
...+...|.+..+|++...+.++.+..+.+.+....+.+........ + +.++.++.++... -+--+..-..+
T Consensus 182 ~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~ 261 (497)
T COG1953 182 QLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIP 261 (497)
T ss_pred HHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCc
Confidence 55566779999999999999999999999999888876553221111 1 1122333333221 11123344566
Q ss_pred hhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC--CChHHHHHHHcChhHHH-HHHHHHHHHHHHHH
Q 014358 280 NSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE--DAPLSDAFASRGLKYVS-VLISFGAVAGLTTT 356 (426)
Q Consensus 280 ~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~ 356 (426)
..+.+.|+| |+.-++-.+++.+...+.-++.+......-. -..+ -+|. ++..+....... .+..+..++++.++
T Consensus 262 DFsRfa~s~-~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~-lyG~~~w~P~-di~~~~~~~~~~~fl~~l~~~iati~~ 338 (497)
T COG1953 262 DFTRFAKSQ-KAQIWGQLVGLPVNFALFSLIGVVVTSASYI-LYGETIWDPL-DIVARFLSGFYAAFLAGLTFAVATIST 338 (497)
T ss_pred hhhcccCCh-hhhhhccchhhhHHHHHHHHHHhhHHHHHHH-hhCcccCCHH-HHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 777777775 4555665666666555554444443321110 0111 1233 444444433333 35566666666664
Q ss_pred HHH
Q 014358 357 LLV 359 (426)
Q Consensus 357 ~~~ 359 (426)
..+
T Consensus 339 Ni~ 341 (497)
T COG1953 339 NIA 341 (497)
T ss_pred hHH
Confidence 433
No 63
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.73 E-value=5e-05 Score=73.22 Aligned_cols=242 Identities=11% Similarity=0.074 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 014358 94 VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFP 173 (426)
Q Consensus 94 ~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (426)
++++.+++.++.......+++++.+... ....-.|..||.+-+.+.....++.++-..+.+....++.....
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Gl---pqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~----- 125 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGL---PQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG----- 125 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCC---ChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-----
Confidence 5666666666555555555555544433 33444455799999999888888888877777777777652221
Q ss_pred ccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccc-cCCCC
Q 014358 174 FFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDV-SNWSP 252 (426)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~-~~~~~ 252 (426)
+..|.| ...++.-+++++...+|.|...+++.+.....++..+......+-..+. +-...
T Consensus 126 ---~~~~~~----------------~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~ 186 (442)
T COG1457 126 ---TGLPVW----------------AGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWV 186 (442)
T ss_pred ---CCCcHH----------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeec
Confidence 123332 3445555677778888999999999999888777666666555442211 11111
Q ss_pred CCCCchHHHHHHHHHHHHHhhhHH-HHhhhhhhhCCCC--CChhHHHHHHHHH-HHHHHHHHHHHHHhcccccccCCCCh
Q 014358 253 FAPNGFKEILTGATVVFFAYVGFD-AVANSAEESKKPQ--RDLPIGILGSLLI-CAALYVGVSLVLTGMVPYKFLDEDAP 328 (426)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~G~e-~~~~~~~E~k~p~--k~~p~ai~~~~~~-~~v~y~~~~~~~~~~~~~~~~~~~~~ 328 (426)
-.|..+.+|+.++..+.-.+..+- .++.++.-.|+|+ |.+ .+...+... ....+++-... ....+.++ +
T Consensus 187 ~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~-~~~~~G~~l~~~~~~ilGa~~-a~a~g~~~-----~ 259 (442)
T COG1457 187 KGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAF-LAAVLGFFLGTSFMMILGAAL-AAAAGNAD-----S 259 (442)
T ss_pred cCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHH-HHHHHHHHHHHHHHHHHHHHH-HHhcCCCc-----h
Confidence 115556677777776655555444 5677888888765 222 222222222 22222222222 22222222 3
Q ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014358 329 LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (426)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ 371 (426)
..+.....|+ +..+..+.+.++..++....+|+++=-....
T Consensus 260 ~~~~~~~~G~--~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i 300 (442)
T COG1457 260 IADVMLGLGG--FGLPAILILVLGTVTTNANNLYSAGLSFANI 300 (442)
T ss_pred HHHHHHhccc--HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 4455555553 4555666777777777777777776555543
No 64
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.70 E-value=0.00018 Score=71.93 Aligned_cols=284 Identities=13% Similarity=0.071 Sum_probs=158.9
Q ss_pred ccccChHHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHH---HHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHH
Q 014358 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISF---LLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (426)
Q Consensus 58 ~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~---il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~ 133 (426)
.|+++++....-.+++.++.+-+.......-..|.. ..+.+ ..+.++....+.-+.++.++.. .-...+|.++.
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~T~~e~l~~R 116 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYN--AITINDVLKAR 116 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccHHHHHHHH
Confidence 588999998888888888777666555443334543 11111 1122112223334555555553 36889999999
Q ss_pred hchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHH
Q 014358 134 FNEL-TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (426)
Q Consensus 134 ~g~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (426)
+|++ ...+.+....+..+.....+....+..++..++ .|.| ..+.+..++.+.+..
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------i~~~---------------~~iii~~~iv~iYt~ 173 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------LSYL---------------TALFIFSSSVLIYTT 173 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHH---------------HHHHHHHHHHHHHHH
Confidence 9954 566777776666666667777777777777543 2222 122233344566667
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccc-------------ccCCCCCCCCchH--HHHHHH-HHHHHHhhhHH
Q 014358 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-------------VSNWSPFAPNGFK--EILTGA-TVVFFAYVGFD 276 (426)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-------------~~~~~~~~~~~~~--~~~~~~-~~~~~~~~G~e 276 (426)
.-|.|...+...+-.++.++..+++....+.+.+ .+.+.++.+.++. .+...+ ....+...+..
T Consensus 174 ~GG~~av~~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p 253 (471)
T TIGR02119 174 FGGFRAVALTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLP 253 (471)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCch
Confidence 7788988888877777766665555444433211 1111222222211 111111 11112222333
Q ss_pred HHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhc--ccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHH
Q 014358 277 AVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGM--VPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLT 354 (426)
Q Consensus 277 ~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 354 (426)
....-.-..||+ |+.+|+..++......+++...+.-... ..++....+..+.....+..++++..++...++.+.+
T Consensus 254 ~~~~R~~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~m 332 (471)
T TIGR02119 254 QTAVRCMSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIM 332 (471)
T ss_pred HHHHHHHhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHHH
Confidence 333445556774 7888999888776666665544432221 1112112344455555566667777777777788888
Q ss_pred HHHHHHHHHHHHH
Q 014358 355 TTLLVGLYVQSRL 367 (426)
Q Consensus 355 ~~~~~~~~~~sR~ 367 (426)
++..+.+.+.+-.
T Consensus 333 ST~~s~l~~~ss~ 345 (471)
T TIGR02119 333 STVNSLLLQSSST 345 (471)
T ss_pred HHHHHHHHHHHHH
Confidence 8877777776654
No 65
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.69 E-value=0.00022 Score=71.45 Aligned_cols=283 Identities=14% Similarity=0.118 Sum_probs=157.5
Q ss_pred ccccChHHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHH---HHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHH
Q 014358 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISF---LLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (426)
Q Consensus 58 ~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~---il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~ 133 (426)
.|+++++-..+-.+++.++++-+..........|.. .++.. ....+.....+.-+.++.++.. .=...+|.++.
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~T~~e~l~~R 117 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN--AVTLNDMLRAR 117 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccHHHHHHHH
Confidence 588998888777777777766666655444334543 22211 1111222234444556666653 36889999999
Q ss_pred hchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHH
Q 014358 134 FNEL-TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (426)
Q Consensus 134 ~g~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (426)
+|++ .....+....+..+...+.+....+..++.+++ .+.+ ..+.+..++++.+..
T Consensus 118 yg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------i~~~---------------~~iii~~~iv~iYt~ 174 (483)
T PRK09442 118 YQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------ISYE---------------TGLLIFGITVALYTA 174 (483)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHH---------------HHHHHHHHHHHHHHH
Confidence 9964 566777767777777778888888888887543 1221 112233334455667
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-------------cccCCCCCCCCchH--HHHHHH-HHHHHHhhhHH
Q 014358 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-------------DVSNWSPFAPNGFK--EILTGA-TVVFFAYVGFD 276 (426)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-------------~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~G~e 276 (426)
.-|.|...+...+-.++.++..+++.+..+... +.+.+.+..+.++. .+...+ ....+...+..
T Consensus 175 ~GGl~av~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p 254 (483)
T PRK09442 175 FGGFRAVVLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLP 254 (483)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCC
Confidence 778888888777777766666555443332211 11111222222211 111111 11122222332
Q ss_pred HHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHh---cccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHH
Q 014358 277 AVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTG---MVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGL 353 (426)
Q Consensus 277 ~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 353 (426)
...+-.=..||+ |+..|+..++......+++...+.-.. ..|.. ...+..+.....+..++++..++...++.+.
T Consensus 255 ~~~qR~~aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~~-~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~ 332 (483)
T PRK09442 255 HTAVRCMSYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPDL-TVPDKVIPTLMLKVLPPFAAGIFLAAPMAAI 332 (483)
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCccchHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 223333336775 678899888877776666554443211 12321 1233345555666667777777777778888
Q ss_pred HHHHHHHHHHHHHH
Q 014358 354 TTTLLVGLYVQSRL 367 (426)
Q Consensus 354 ~~~~~~~~~~~sR~ 367 (426)
.++..+.+.+.+-+
T Consensus 333 mST~~s~l~~~ss~ 346 (483)
T PRK09442 333 MSTVDSQLLQSSST 346 (483)
T ss_pred HHHHHHHHHHHHHH
Confidence 87777777666543
No 66
>PRK11017 codB cytosine permease; Provisional
Probab=98.69 E-value=0.00028 Score=68.83 Aligned_cols=218 Identities=13% Similarity=0.115 Sum_probs=121.2
Q ss_pred CcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHh
Q 014358 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (426)
Q Consensus 56 ~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~-~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~ 134 (426)
+.+|+ +.++.+..-++..+....+...+.....-+. .++++.+++.++........+..+.++-. ......|..|
T Consensus 6 ~~~r~-~~~~~~~~~~g~~~~~~~~~~g~~l~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~G~---~~~v~sR~~F 81 (404)
T PRK11017 6 QSARK-GVLSLTMVMLGFTFFSASMWAGGTLGTGLSFVDFLLAVLIGNLLLGIYTAALGYIGAKTGL---STHLLARFSF 81 (404)
T ss_pred HHHhc-chHhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---CHHHHHHHHh
Confidence 34556 8888766655544333323222222111122 36777777766665555555555555533 5667778889
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHh
Q 014358 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (426)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (426)
|.+-+.+.+....+..+...+.+....+..+...++ .+. ....+++.++.......
T Consensus 82 G~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~--------~~~----------------~~~~~i~~~l~~~~~~~ 137 (404)
T PRK11017 82 GEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG--------LDI----------------NLLIVLSGLLMTVTAYF 137 (404)
T ss_pred chhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--------CCH----------------HHHHHHHHHHHHHHHHH
Confidence 998888888887777776677776666665555322 111 11233444555666778
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhccccc-ccCCCCCCCCchHHHHHHHHHHHH-HhhhHHHHhhhhhhhCCCCCCh
Q 014358 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-VSNWSPFAPNGFKEILTGATVVFF-AYVGFDAVANSAEESKKPQRDL 292 (426)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~e~~~~~~~E~k~p~k~~ 292 (426)
|.|...|++.+......+..+...+..+.+.+ ........+.+...++.++....- ...+.-..+.++...|++|+ .
T Consensus 138 G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~-~ 216 (404)
T PRK11017 138 GISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKI-A 216 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccc-e
Confidence 88888999888877766655554443333222 111111112222355555544322 23455567888888888654 3
Q ss_pred hHHHHHHHHH
Q 014358 293 PIGILGSLLI 302 (426)
Q Consensus 293 p~ai~~~~~~ 302 (426)
-.+...+..+
T Consensus 217 ~~~~~lg~~i 226 (404)
T PRK11017 217 VLATMVAFFL 226 (404)
T ss_pred eehhHHHHHH
Confidence 3444444433
No 67
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.68 E-value=0.00014 Score=71.29 Aligned_cols=285 Identities=14% Similarity=0.018 Sum_probs=162.3
Q ss_pred ccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhch-
Q 014358 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE- 136 (426)
Q Consensus 58 ~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~- 136 (426)
.|+++++....-.+++.++++.+.......-..|...++..+...+.....+..+.+.-++.+. -...+|.++.+|+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~T~~e~l~~Ryg~~ 79 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNGA--YTMPEYLEKRFGKR 79 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CchhHHHHHHhCch
Confidence 4789999888888887777776666655444455443333333333445566667776666444 6889999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhh
Q 014358 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (426)
Q Consensus 137 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (426)
....+.++...+..+...+.+....+..++..++ .+.| ..+.+...+++.+...-|.
T Consensus 80 ~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------i~~~---------------~~~ii~~~i~~~Yt~~GG~ 136 (407)
T TIGR00813 80 ILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------LDLY---------------LSLLLLGAITILYTVFGGL 136 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------chHH---------------HHHHHHHHHHHHHHHHcch
Confidence 5667777888888888889999998888887543 1222 2233344445556677788
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccccc-c-------cCCCC----------CCCCc---hHHHHHH---HHHHHHHh
Q 014358 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVD-V-------SNWSP----------FAPNG---FKEILTG---ATVVFFAY 272 (426)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-~-------~~~~~----------~~~~~---~~~~~~~---~~~~~~~~ 272 (426)
|.......+-.++.++..+.+.+..+.+.+ . .+..+ ...++ ...+..+ .......+
T Consensus 137 ~av~~Td~iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (407)
T TIGR00813 137 KAVVWTDTIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWY 216 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHH
Confidence 888888777777666555444443332211 0 00000 00110 0011111 11110001
Q ss_pred hhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHh---ccc----ccc----cCCCChHHHHHHHcChhHH
Q 014358 273 VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTG---MVP----YKF----LDEDAPLSDAFASRGLKYV 341 (426)
Q Consensus 273 ~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~---~~~----~~~----~~~~~~~~~~~~~~~~~~~ 341 (426)
..-....+-.=-.|| +|+.+|+...+.....+++++..+.-.. ..+ ..+ .+.+..+.....+..++++
T Consensus 217 ~~~~~~~qR~~a~ks-~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l 295 (407)
T TIGR00813 217 WTNQVIVQRCLAAKS-AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGL 295 (407)
T ss_pred hcCHHHhhHHHhcCC-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcch
Confidence 000011222233456 4778899888877766666544433222 122 111 1223344455566667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 342 SVLISFGAVAGLTTTLLVGLYVQSRLY 368 (426)
Q Consensus 342 ~~~~~~~~~~s~~~~~~~~~~~~sR~l 368 (426)
.-++...++.+..++..+.+.+.+-.+
T Consensus 296 ~gl~~agilaA~mST~~s~l~a~ss~~ 322 (407)
T TIGR00813 296 AGLFLAAILAAVMSTLSSQLNSASTVF 322 (407)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 777777888888888877777776654
No 68
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.53 E-value=3.5e-09 Score=103.91 Aligned_cols=289 Identities=13% Similarity=0.124 Sum_probs=180.8
Q ss_pred cccChHHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhhCC---CCCCchhhHHHHHh
Q 014358 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFP---AVVGGAYLYAYTAF 134 (426)
Q Consensus 59 r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p---~~~Gg~y~~~~~~~ 134 (426)
||-|.++.....+..++|+|++..|....+ +|.. .++..++.+.+.......+.|.....| + .-.+-+-+++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~-~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~-~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQ-SGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTG-RRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHhhhhhhccccccccccc-cccccccccccc
Confidence 567899999999999999999998886555 6764 888888888889999999999998876 3 345555567899
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccC--CCccccCCCccccccchhhHHHHHHHHHHHHHHH
Q 014358 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKEN--IPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (426)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (426)
||+.+++...+..+........+....++.+..++. ..... ...+. ..++..+++.... .
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~---~~~~~~~~~~~~-------------~~~i~~~i~~pls--~ 140 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIP---SFFGDLFISRYV-------------WIIIFALIVLPLS--F 140 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeecccc---cccccccccccc-------------ccccccccccccc--c
Confidence 999999999888888887777777777777777433 21110 11100 0111111111111 1
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhhhccc--ccccCCC---CCCCCchHHHHHHHHHHHHHhhhHHHHhhhhhhhCC
Q 014358 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE--VDVSNWS---PFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKK 287 (426)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 287 (426)
....+..+....+.....+..+.......... .+..+.. .+.+..+.++..++....|+|.+......+.+|+|+
T Consensus 141 ~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~ 220 (409)
T PF01490_consen 141 LKNLKSLRYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKD 220 (409)
T ss_pred cchhhHHHHHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccC
Confidence 12233333333222222221101111111111 1111111 112345568999999999999999999999999999
Q ss_pred CCC--ChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 288 PQR--DLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLK-YVSVLISFGAVAGLTTTLLVGLYVQ 364 (426)
Q Consensus 288 p~k--~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~ 364 (426)
|+| ++.|....+...++++|....+......+++ .++ .+..++... +...+..+...+..+.+.....+..
T Consensus 221 ~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~-~~~-----~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~ 294 (409)
T PF01490_consen 221 PSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDS-VQG-----NILLNLPNDDVLIIIARILLVISLLLSYPLQLFPA 294 (409)
T ss_pred CccccccceeeeehhhhhhHHhhhhhhcccceeeee-ecc-----hhhhcCCCcccccccccccchhhhhhccccccchh
Confidence 865 4559999999999999999988887776543 222 233333222 3444555555555555555556666
Q ss_pred HHHHHHhHh
Q 014358 365 SRLYLGLGR 373 (426)
Q Consensus 365 sR~l~~~a~ 373 (426)
.+.+...-+
T Consensus 295 ~~~l~~~~~ 303 (409)
T PF01490_consen 295 RNSLENLLF 303 (409)
T ss_pred Hhhhhhhee
Confidence 666665543
No 69
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.49 E-value=2e-05 Score=77.29 Aligned_cols=285 Identities=16% Similarity=0.102 Sum_probs=142.2
Q ss_pred ccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchh
Q 014358 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNEL 137 (426)
Q Consensus 58 ~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~ 137 (426)
.|+++++...+-.+++.++.+-+..........|....+..+...+......+.++.--++.. .-...+|.++.+|+.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~T~~e~~~~Ryg~~ 82 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSG--AVTIPEYLEKRYGSK 82 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT----SHHHHHHHHT-HH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccc--hhhhhhhhhhhcCCc
Confidence 478999988887777778777676655444445655333333333334444455555555443 368899999999998
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhh
Q 014358 138 T--AFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (426)
Q Consensus 138 ~--g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (426)
. ..+.+....+..+...+.+....+..++..++. +.+ ..+.+...++..+...-|
T Consensus 83 ~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi--------~~~---------------~~~~i~~~i~~iYt~~GG 139 (406)
T PF00474_consen 83 ALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI--------PYN---------------TAILIVGVIVIIYTFFGG 139 (406)
T ss_dssp H-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------HH---------------HHHHHHHHHHHHTTCTT-
T ss_pred hhhhhhcccccchhhhhhhhccccccccchhhccch--------hhh---------------HHHHHHHHHHHHhhhhhh
Confidence 8 666666667777788888888888888875441 111 122233344444556668
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhcccc-------------cccCCCCCCCCch---HHHHHHHHHHHHHhhhHHHHh
Q 014358 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEV-------------DVSNWSPFAPNGF---KEILTGATVVFFAYVGFDAVA 279 (426)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~G~e~~~ 279 (426)
.|...+...+-.++.++..+++.+..+... +++..+.+.|.+. .+.............|.....
T Consensus 140 l~av~~td~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p 219 (406)
T PF00474_consen 140 LRAVAWTDFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGAP 219 (406)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH-
T ss_pred HhhhhHHHHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccch
Confidence 888887777766666655555544443211 1111111212221 011111101000111222223
Q ss_pred hhhh---hhCCCCCChhHHHHHHHHHHHHHHHHHHH------HHHhcccc----cccCCCChHHHHHHHcChhHHHHHHH
Q 014358 280 NSAE---ESKKPQRDLPIGILGSLLICAALYVGVSL------VLTGMVPY----KFLDEDAPLSDAFASRGLKYVSVLIS 346 (426)
Q Consensus 280 ~~~~---E~k~p~k~~p~ai~~~~~~~~v~y~~~~~------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (426)
++.. -.||+ |+.+|+...+......++..... ......|+ ++.+.+..+.....+..+++..-++.
T Consensus 220 ~~~qR~~aak~~-~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~ 298 (406)
T PF00474_consen 220 HFWQRFLAAKSP-KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFL 298 (406)
T ss_dssp HHHHHHHSSSHH-HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHH
T ss_pred HHHHHHHhcCCH-HHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHH
Confidence 3333 33553 67888877776554444443211 11111121 11122334555666667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014358 347 FGAVAGLTTTLLVGLYVQSRLY 368 (426)
Q Consensus 347 ~~~~~s~~~~~~~~~~~~sR~l 368 (426)
..++.+..++..+.+.+.+-.+
T Consensus 299 ~~~~aA~~ST~~s~l~a~ss~~ 320 (406)
T PF00474_consen 299 AGILAAIMSTADSLLLAISSIF 320 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhhhhh
Confidence 7777788888888887777654
No 70
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.48 E-value=0.0016 Score=65.36 Aligned_cols=285 Identities=13% Similarity=0.049 Sum_probs=144.4
Q ss_pred ccccChHHHHHHHhhhhhcchhhhc-hHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCC--C-CCCchhhHHHHH
Q 014358 58 LRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFP--A-VVGGAYLYAYTA 133 (426)
Q Consensus 58 ~r~l~~~~~~~l~~~~~ig~gi~~~-~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p--~-~~Gg~y~~~~~~ 133 (426)
.|+++++-..+-..++.+++..+.. ++.... .|....+..+-..+..+...+.+++.-+++. + ..=-.++|.++.
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~-~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~R 113 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYV-TGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENR 113 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHH
Confidence 5889988877666665565555554 444444 4554322222111222333344444434332 1 023579999999
Q ss_pred hch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHH
Q 014358 134 FNE---LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTI 210 (426)
Q Consensus 134 ~g~---~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (426)
+|+ ....+.+....+......+......+..++.+++ .+.| ..+.+...+.+.+
T Consensus 114 yg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------i~~~---------------~~iii~~~i~~~Y 170 (487)
T TIGR02121 114 FNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------LDYK---------------TGLLIGALIIVIY 170 (487)
T ss_pred hCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------ccHH---------------HHHHHHHHHHHHH
Confidence 994 4555666666666666777777777777777543 1222 2233344556666
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-------------cccCCCCCCCCchHHHHHHHHHHHHHhhhHHH
Q 014358 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-------------DVSNWSPFAPNGFKEILTGATVVFFAYVGFDA 277 (426)
Q Consensus 211 ~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~ 277 (426)
...-|.|.......+-.++.++..+.+.+..+... +++..+.+.+..+..+...+... ..+.|...
T Consensus 171 t~~GGl~av~~TD~iQ~~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~p~ 249 (487)
T TIGR02121 171 TFFGGFLAVSWTDFVQGLLMFFALVLVPIVALFNLGGFGETLSAVAAINPHLLDMFKGASVIAIISLLAWG-LGYFGQPH 249 (487)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCccccCCCCCCCHHHHHHHHHHH-HHhccchH
Confidence 77778888888777777666655544443333221 11111212122222222211111 11112222
Q ss_pred HhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHH---Hhccccc-cc---CCCChHHHHHHHcChhHHHHHHHHHHH
Q 014358 278 VANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVL---TGMVPYK-FL---DEDAPLSDAFASRGLKYVSVLISFGAV 350 (426)
Q Consensus 278 ~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~---~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (426)
..+-.--.||+ |+..|+...+.......++...+.. ....+.. +. +.+..+....++..++++.-++...++
T Consensus 250 ~~qR~~aaks~-k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a~il 328 (487)
T TIGR02121 250 IIVRFMAIRSH-KELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLAAIL 328 (487)
T ss_pred HHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHHHHH
Confidence 22222224554 6788888777544333322211111 1111111 11 223344445555666777777777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014358 351 AGLTTTLLVGLYVQSRLY 368 (426)
Q Consensus 351 ~s~~~~~~~~~~~~sR~l 368 (426)
.+..++..+.+++.+-.+
T Consensus 329 aA~mST~~s~l~s~ss~~ 346 (487)
T TIGR02121 329 AAIMSTISSQLLVSSSAL 346 (487)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888878777776543
No 71
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.45 E-value=0.001 Score=64.37 Aligned_cols=276 Identities=18% Similarity=0.172 Sum_probs=152.1
Q ss_pred hhhhhcchhhhchHHhhhhcCch---HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchhHHHHHHHHHH
Q 014358 71 VGASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLM 147 (426)
Q Consensus 71 ~~~~ig~gi~~~~~~~~~~~G~~---~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~ 147 (426)
++--.|+|=..-|...-+.+|.. +.+++++.++..=..+. ++.. . .||.+.-..+..||..+.+......
T Consensus 13 FamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgv----ia~~-~--~~~~~~~l~~~v~~~f~~if~~~i~ 85 (427)
T PF05525_consen 13 FAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGV----IAVA-K--SGGGIEDLASRVGPKFALIFTILIY 85 (427)
T ss_pred HHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHH----HHHh-h--cCCCHHHHhcccCcHHHHHHHHHHH
Confidence 33447888888888777778863 55666665554322221 1111 1 3434444445568888877665443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 014358 148 LDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMT 227 (426)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 227 (426)
+.--... +..+..+...... ..|.+.. ...+ ...+..+++..+..++.+..-|...++-.+++
T Consensus 86 l~IGP~~-aiPRtaa~sfe~~--i~p~~~~-~~~~-------------~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LT 148 (427)
T PF05525_consen 86 LSIGPLF-AIPRTAAVSFEMG--IAPFFPE-NSNI-------------SLLIFSIIFFAITYLLSLNPSKIVDRIGKFLT 148 (427)
T ss_pred HHHHhcc-cCcchhhhhHHHh--hhccCCc-cccc-------------chhhhhHHHHHHHHHHHhchhhHHHHHHHHHH
Confidence 3211110 1112222211111 2232221 1111 12567788888899999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCC---CCCch-HHHHHHH----HHHHHHhhhHHHHhhhhhhhCCCCCChhHHHHHH
Q 014358 228 VVKVIIVIVVIFAGAFEVDVSNWSPF---APNGF-KEILTGA----TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGS 299 (426)
Q Consensus 228 ~~~i~~~~~~~i~~~~~~~~~~~~~~---~~~~~-~~~~~~~----~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~ 299 (426)
.+.++.++.+++.++.+...+...+- .++.+ .++..+. ..+...|...-..+--....||+ |+..|.+..+
T Consensus 149 P~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~-k~~~~~~~~a 227 (427)
T PF05525_consen 149 PILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDK-KEIKKYTIKA 227 (427)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Confidence 99999999999988876433322221 11111 1122111 11223333333333333334443 3444544444
Q ss_pred H----HHHHHHHHHHHHHHHhcccc--cccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014358 300 L----LICAALYVGVSLVLTGMVPY--KFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (426)
Q Consensus 300 ~----~~~~v~y~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ 371 (426)
- ....++|......-....+. ++.+.++.+..+.++..|+.+..++.+.+.++++++..+-..+++....++
T Consensus 228 g~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~ 305 (427)
T PF05525_consen 228 GLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSEL 305 (427)
T ss_pred HHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34444444333332222221 122233455566677888899999999999999999999999999986664
No 72
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.44 E-value=0.001 Score=63.73 Aligned_cols=293 Identities=15% Similarity=0.101 Sum_probs=153.9
Q ss_pred ChHHHHHHHhhhhhcchhhhchHHhh-hhcCchHHHHHHHHHHHHHHHHHHHHHHH--hhCCCCCCchhhHHHHHhchhH
Q 014358 62 GLFELVLIGVGASVGAGIFVVTGTVA-RDAGPGVTISFLLAGAASVLNALCYAELA--SRFPAVVGGAYLYAYTAFNELT 138 (426)
Q Consensus 62 ~~~~~~~l~~~~~ig~gi~~~~~~~~-~~~G~~~~~~~il~~~~~~~~~~~~~el~--~~~p~~~Gg~y~~~~~~~g~~~ 138 (426)
|....+.-+.|+.+|.|-..+.+... +++|.+-++.|++..+ .+-.-..+.|++ ++... +..-.| ++..+++.
T Consensus 10 SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l-~~GiPlli~Ef~iGr~~~~--~~~~a~-~~l~~~~~ 85 (439)
T COG0733 10 SRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLL-LVGIPLLLAEFAIGRRGRK--NAVGAF-RKLAPKKK 85 (439)
T ss_pred hHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHH-HHhHHHHHHHHHhhhhcCC--ChhHHH-HHhccCcc
Confidence 34444555777889999888888666 4445555555544333 233333444544 44333 222222 22222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhh
Q 014358 139 AFLVFAQLMLDYHIGAASIARSLASYVVSILE-LFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVG 217 (426)
Q Consensus 139 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (426)
....||.-.+......+.+....+-.+.+.+. +...+. .+.+.......+..++.......-.+++++..++..+|++
T Consensus 86 ~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~ 164 (439)
T COG0733 86 WEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALP-DTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVK 164 (439)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHH
Confidence 44445554444444444444333333333222 111111 1111111111111122223344456777778888888987
Q ss_pred h-hHHHHHHHHHHHHHHHHHHHhhhccccc---------ccCCCCCCCCchHHHHHHHHHHHHHhh-hHHHHhhhhhhhC
Q 014358 218 E-SSVLNSCMTVVKVIIVIVVIFAGAFEVD---------VSNWSPFAPNGFKEILTGATVVFFAYV-GFDAVANSAEESK 286 (426)
Q Consensus 218 ~-~~~~~~~~~~~~i~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~e~~~~~~~E~k 286 (426)
. ..|.+.++.....+.++.+.+-.+...+ ..+|.... +...+..++..++|+.. |+-....++.-.+
T Consensus 165 ~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~--~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~ 242 (439)
T COG0733 165 KGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLT--DPKVWLAALGQAFFSLSLGFGIMITYSSYLS 242 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcC--chhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 7 8888888888777777777666554211 11222221 14567888889999885 8888889999988
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHH---hcccccccCCCC-----hHHHHHHHcC-hhHHHHHHHHHHHHHHHHHH
Q 014358 287 KPQRDLPIGILGSLLICAALYVGVSLVLT---GMVPYKFLDEDA-----PLSDAFASRG-LKYVSVLISFGAVAGLTTTL 357 (426)
Q Consensus 287 ~p~k~~p~ai~~~~~~~~v~y~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~ 357 (426)
+ |+|+++.-.........+-++.-+.+. ...+.+ .+++. .+..++.++. +.....++.++..++.+++.
T Consensus 243 k-~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~-~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~ 320 (439)
T COG0733 243 K-KSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGAD-ASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSA 320 (439)
T ss_pred c-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH
Confidence 7 678998877777766666655544443 222222 11111 3445555554 33344445555555555555
Q ss_pred HHHHHH
Q 014358 358 LVGLYV 363 (426)
Q Consensus 358 ~~~~~~ 363 (426)
.+.+-.
T Consensus 321 iSmlE~ 326 (439)
T COG0733 321 ISMLEV 326 (439)
T ss_pred HHHHHH
Confidence 544433
No 73
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.42 E-value=0.0017 Score=65.98 Aligned_cols=156 Identities=11% Similarity=-0.008 Sum_probs=93.4
Q ss_pred ccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCCchhhHHHHHhc-
Q 014358 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASV-LNALCYAELASRFPAVVGGAYLYAYTAFN- 135 (426)
Q Consensus 58 ~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~-~~~~~~~el~~~~p~~~Gg~y~~~~~~~g- 135 (426)
.|+++++....-..++.++..-|..........|...++.. ++..+.+ ...+.++|--++.-. =-..+|.++.|+
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~~~-~g~~~~~~i~~~~~a~~lrr~g~--~T~~d~l~~Rf~s 142 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIYS-LGFLVGWPIILFLIAERLRNLGR--YTFADVASYRLKQ 142 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC--ccHHHHHHHHcCC
Confidence 58899987765555555665555554433434565432222 2333333 334455665555433 456677778887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhh
Q 014358 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (426)
Q Consensus 136 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (426)
|....+.+....+..+.+...+....+..++.+++ .+.| ..+.+..++.+.+...-|
T Consensus 143 ~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------i~~~---------------~~iii~~~i~~~Yt~~GG 199 (549)
T TIGR02711 143 RPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------LNYH---------------VAVVLVGILMVMYVLFGG 199 (549)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHH---------------HHHHHHHHHHHHHHHhhh
Confidence 56777777777777777777788888877777543 1222 123333344555666778
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHh
Q 014358 216 VGESSVLNSCMTVVKVIIVIVVIF 239 (426)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~i 239 (426)
.|...+.+.+-.++.++..+++.+
T Consensus 200 m~av~~td~iQ~~im~~g~i~~~~ 223 (549)
T TIGR02711 200 MLATTWVQIIKAVLLLFGATFMAF 223 (549)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777776665554433
No 74
>PRK12488 acetate permease; Provisional
Probab=98.40 E-value=0.0022 Score=65.16 Aligned_cols=157 Identities=10% Similarity=-0.067 Sum_probs=100.2
Q ss_pred ccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHH-HHHHHHHHHhhCCCCCCchhhHHHHHhc-
Q 014358 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVL-NALCYAELASRFPAVVGGAYLYAYTAFN- 135 (426)
Q Consensus 58 ~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~-~~~~~~el~~~~p~~~Gg~y~~~~~~~g- 135 (426)
.|+++++.......++.+++.-|..........|...++ +.++..+.++ ..+.+++--++... =-.++|.++.||
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~-~~~g~~~g~~~~~~~~a~~lr~~g~--~T~~d~l~~Rf~s 142 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLL-YALGVLAGWPIILFLIAERLRNLGK--YTFADVVSYRLAQ 142 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHH-HHHHHHHHHHHHHHHHHHHHHHCCC--cchHHHHHHHcCC
Confidence 589999999888888777777666555444345654322 2223333332 23445555555433 467788888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhh
Q 014358 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (426)
Q Consensus 136 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (426)
|....+.+....+..+.+...+....+..++.+++ .+.| ..+.+...+.+.+...-|
T Consensus 143 ~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------i~~~---------------~~iii~~~i~~~Yt~~GG 199 (549)
T PRK12488 143 GPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------ISYL---------------YAVVIVGALMVLYVTFGG 199 (549)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHH---------------HHHHHHHHHHHHHHhccc
Confidence 56888888888888888888888888888877543 1222 122233344555566779
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhh
Q 014358 216 VGESSVLNSCMTVVKVIIVIVVIFA 240 (426)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~i~ 240 (426)
.|...+.+.+-.++.++..++..+.
T Consensus 200 m~av~~td~iQ~~im~~~~i~~~~~ 224 (549)
T PRK12488 200 MLATTWVQIIKAVLLLSGTSFMAFM 224 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888887777776665554433
No 75
>PRK09395 actP acetate permease; Provisional
Probab=98.36 E-value=0.0046 Score=62.99 Aligned_cols=157 Identities=10% Similarity=-0.029 Sum_probs=94.7
Q ss_pred cccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCCchhhHHHHHhc
Q 014358 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASV-LNALCYAELASRFPAVVGGAYLYAYTAFN 135 (426)
Q Consensus 57 l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~-~~~~~~~el~~~~p~~~Gg~y~~~~~~~g 135 (426)
-.|++++|......+++.+++.-|.......-..|...++. .++..+.. ...+.+++--++... =-.++|.++.||
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~-~~~~~~g~~~~~~~~~~~~r~~g~--~T~~d~l~~Ryg 143 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIY-SIGFLVGWPIILFLIAERLRNLGK--YTFADVASYRLK 143 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHH-HHHHHHHHHHHHHHHHHHHhhCCC--ccHHHHHHHHcC
Confidence 35889998877777777777666665554444456543222 22222222 223333333232221 356677778898
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHh
Q 014358 136 -ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (426)
Q Consensus 136 -~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (426)
|....+.+....+..+.+...+....+..++.+++ .+.| ..+.+..++.+.+...-
T Consensus 144 s~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------i~~~---------------~~ili~~~i~~iYt~~G 200 (551)
T PRK09395 144 QGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------LNYH---------------VAVVLVGVLMMVYVLFG 200 (551)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHH---------------HHHHHHHHHHHHHHhhc
Confidence 56888888888887788888888888877777543 1221 22334444555666777
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHh
Q 014358 215 GVGESSVLNSCMTVVKVIIVIVVIF 239 (426)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~i 239 (426)
|.|...+.+.+-.++.++..+++.+
T Consensus 201 Gm~av~~TD~iQ~iim~~g~ii~~~ 225 (551)
T PRK09395 201 GMLATTWVQIIKAVLLLSGATFMAF 225 (551)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8998888877777666665544433
No 76
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.30 E-value=0.0042 Score=60.23 Aligned_cols=245 Identities=14% Similarity=0.038 Sum_probs=145.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c
Q 014358 93 GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE-L 171 (426)
Q Consensus 93 ~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 171 (426)
.++++.+++.++........+..+.+... ......|..||++-+.+......+..+...+.+....++.++.+.+ .
T Consensus 30 ~ai~aiilG~~i~~~~~~l~~~~G~~~Gl---~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~ 106 (386)
T TIGR02358 30 RGLLAILLGHLVGVLLLSAAGVIGADTGL---SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRL 106 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCc---CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666666666655555555555555533 6777888899999999999999999999999999888988888654 1
Q ss_pred ccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Q 014358 172 FPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS 251 (426)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~ 251 (426)
++. .+. .+...++.++.......|.|..+|++.+...+..+..+........+.+.....
T Consensus 107 ~~~----~~~----------------~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 166 (386)
T TIGR02358 107 FGE----ESP----------------MLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELW 166 (386)
T ss_pred cCC----Cch----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhc
Confidence 111 000 122233344566667789999999999988877776666555444433321111
Q ss_pred CCCCCchHHHHHHHHHHHHH-hhhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHH
Q 014358 252 PFAPNGFKEILTGATVVFFA-YVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLS 330 (426)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~-~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~ 330 (426)
. .+.. ..+..++...... ..+....+.++...|+|| +.-++...+..+...+..+.-.......+. .+|.
T Consensus 167 ~-~~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~-~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~-----~d~~- 237 (386)
T TIGR02358 167 N-RAGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPR-HVFLGTVLGYFIGSCWMYFLGLAVTLATGQ-----TDII- 237 (386)
T ss_pred C-CCCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCc-ceehHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCHH-
Confidence 1 1122 3444443332221 223334678888888764 455676666666655555555444433332 2343
Q ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014358 331 DAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (426)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~a 372 (426)
+.....+.. .+..+..+++..++.....|.++--+..+.
T Consensus 238 ~~~~~~g~~---~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~ 276 (386)
T TIGR02358 238 SILAGAGLG---IPALLIILLSTVTTTFMDIYSAAISTGNLL 276 (386)
T ss_pred HHHHhccHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333333322 233455566666666677777776666654
No 77
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.29 E-value=0.0056 Score=61.35 Aligned_cols=281 Identities=13% Similarity=0.036 Sum_probs=149.7
Q ss_pred cccccChHHHHHHHhhhh-hc-chhhhchHHhhhhcCch-HHHHHH---HHHHHHHHHHHHHHHHHhhCCCCCCchhhHH
Q 014358 57 LLRRLGLFELVLIGVGAS-VG-AGIFVVTGTVARDAGPG-VTISFL---LAGAASVLNALCYAELASRFPAVVGGAYLYA 130 (426)
Q Consensus 57 l~r~l~~~~~~~l~~~~~-ig-~gi~~~~~~~~~~~G~~-~~~~~i---l~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~ 130 (426)
-.|+++.+ +..++.+.. .+ ...+..++..+. .|.. .++... ...+.....+--+.+++ +-++ .=...+|.
T Consensus 36 ~gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~-~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~-~~T~~d~l 111 (493)
T COG0591 36 GGRSLGPF-VYALSAAASDTSGWTFLGLPGLAYA-SGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARG-ATTIPDFL 111 (493)
T ss_pred cCCcCChH-HHHHHHHHHHHHHHHHhcchHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccC-CccHHHHH
Confidence 35889999 666666544 44 444445555555 4554 333333 33333445555566666 4444 56899999
Q ss_pred HHHhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHH
Q 014358 131 YTAFN-ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (426)
Q Consensus 131 ~~~~g-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (426)
++.|| +....+.+....+..+.+.+.+....+..++..++ .+.+ ....+....+..
T Consensus 112 ~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------i~~~---------------~~~~~~~~~v~~ 168 (493)
T COG0591 112 EARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------ISYV---------------TGILIGALIVAL 168 (493)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------CCHH---------------HHHHHHHHHHHH
Confidence 99999 99999999999999999999999999998866433 1111 122333445555
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc----------c-ccC---CCCCCCCchHHHHHHHHH------HH
Q 014358 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV----------D-VSN---WSPFAPNGFKEILTGATV------VF 269 (426)
Q Consensus 210 ~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~----------~-~~~---~~~~~~~~~~~~~~~~~~------~~ 269 (426)
+....|.|...+...+=+.+.++.+..+.+...... + .++ .+++ ++......-... ..
T Consensus 169 Yt~~gG~~av~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l 246 (493)
T COG0591 169 YTFLGGLRAVVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPF--DGALSPIYIISLIAWGTLFL 246 (493)
T ss_pred HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcc--cccchHHHHHHHHHHHHHHh
Confidence 556667777777666666655555555544433320 0 010 1111 111111111111 12
Q ss_pred HHhhhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHH----hc-cccc-----ccCCCChHHHHHHHcChh
Q 014358 270 FAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLT----GM-VPYK-----FLDEDAPLSDAFASRGLK 339 (426)
Q Consensus 270 ~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~----~~-~~~~-----~~~~~~~~~~~~~~~~~~ 339 (426)
..+.......+.-. .|++| +.||........-.+.+++..++.. .. .... +.+.+..+........++
T Consensus 247 ~~~~~~~i~~r~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~ 324 (493)
T COG0591 247 GYFGQPHILPRFMA-AKSIK-SLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPP 324 (493)
T ss_pred hhhcCchhhhhhhh-hccHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHHChH
Confidence 22222233333333 45543 3454444444444443333322221 11 1111 112233455555667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 340 YVSVLISFGAVAGLTTTLLVGLYVQSRLY 368 (426)
Q Consensus 340 ~~~~~~~~~~~~s~~~~~~~~~~~~sR~l 368 (426)
+..-+....++.+..++..+.....+-.+
T Consensus 325 ~~~g~~~~ailaAvmSt~ss~ll~~ss~~ 353 (493)
T COG0591 325 WIAGLLLAAILAAVMSTASSQLLVASSAI 353 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 77777766666666666666666655443
No 78
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.25 E-value=0.0051 Score=62.73 Aligned_cols=150 Identities=11% Similarity=0.002 Sum_probs=97.7
Q ss_pred ccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchH-HH--HHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHh
Q 014358 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGV-TI--SFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (426)
Q Consensus 58 ~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~-~~--~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~ 134 (426)
.|++++|....-.+++.+++..|..........|... ++ .|.++ ....++.+++.-++... -..++|.++.|
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~---~~~~~~~~~p~~rr~~~--~T~~e~l~~Rf 105 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGG---YVLLALLLAPYLRKFGK--YTVPDFIGDRY 105 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHH---HHHHHHHHHHHHHHCCC--ccHHHHHHHHh
Confidence 5889999988887777777666665544433356532 22 22222 23345667777777755 58999999999
Q ss_pred ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHH
Q 014358 135 NE-LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (426)
Q Consensus 135 g~-~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (426)
|+ ....+.+....+..+...+.+....+..++.+++ .+.| ..+.+..++.+.+...
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g--------i~~~---------------~~iii~~~i~~iYt~~ 162 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE--------VDFE---------------TGVFIGMAIVFFYAVL 162 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHH---------------HHHHHHHHHHHHHHHh
Confidence 84 4688888888888888888888888887777544 1221 1122333445556666
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 014358 214 WGVGESSVLNSCMTVVKVIIVI 235 (426)
Q Consensus 214 ~g~~~~~~~~~~~~~~~i~~~~ 235 (426)
-|.|...+...+-+++.++..+
T Consensus 163 GG~~aV~~TD~iQ~iim~ig~i 184 (552)
T TIGR03648 163 GGMKGVTWTQVAQYIVLIVAYL 184 (552)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 7888888877776666555433
No 79
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.22 E-value=0.0088 Score=60.26 Aligned_cols=158 Identities=14% Similarity=0.004 Sum_probs=92.0
Q ss_pred ccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHH-H---HhhCCCCCCchhhHHHHH
Q 014358 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAE-L---ASRFPAVVGGAYLYAYTA 133 (426)
Q Consensus 58 ~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~e-l---~~~~p~~~Gg~y~~~~~~ 133 (426)
.|+++++-..+-..++.+++..+.......-..|....+..+...+..+.....+.. + ..+.+. .=-.++|.++.
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~T~~e~l~~R 117 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNN-ALTLPDYFTGR 117 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ceeHHHHHHHH
Confidence 588999988877777777766666544333345654322222111111111111111 1 111223 34688999999
Q ss_pred hch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHH
Q 014358 134 FNE---LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTI 210 (426)
Q Consensus 134 ~g~---~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (426)
||+ ....+.+....+....+.+.+....+..++.+++ .+.+ ..+.+...+.+.+
T Consensus 118 y~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------i~~~---------------~~iii~~~iv~iY 174 (502)
T PRK15419 118 FEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------MSYE---------------TALWAGAAATILY 174 (502)
T ss_pred hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHH---------------HHHHHHHHHHHHH
Confidence 984 4565666666666677777777777777777443 1211 2233344556666
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 014358 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIF 239 (426)
Q Consensus 211 ~~~~g~~~~~~~~~~~~~~~i~~~~~~~i 239 (426)
...-|.|...+...+-+++.++..+++.+
T Consensus 175 t~~GGl~aV~~TD~iQ~~imi~g~i~~~~ 203 (502)
T PRK15419 175 TFIGGFLAVSWTDTVQASLMIFALILTPV 203 (502)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788898888887777776665554443
No 80
>PRK10484 putative transporter; Provisional
Probab=98.15 E-value=0.011 Score=59.99 Aligned_cols=291 Identities=13% Similarity=0.021 Sum_probs=142.2
Q ss_pred ccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhch
Q 014358 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGV-TISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (426)
Q Consensus 58 ~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~-~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~ 136 (426)
.|+++++-...-..++.+++.-|.......-..|... .+.+ ...+.....++.+++--++.. .=..++|.++.+|+
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~--~~T~~e~l~~Ryg~ 113 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEV-TAAIALIILALIFLPRYLKSG--ITTIPDFLEERYDK 113 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHH-HHHHHHHHHHHHHHHHHHhcC--CccHHHHHHHhcCc
Confidence 5899999887777777777666665543333356543 2222 222223334444444333432 35788999999998
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHH--HHHHHHHHHHH
Q 014358 137 LTAFLVFAQLMLDYHIG-AASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAP--ILLALLTIVLC 213 (426)
Q Consensus 137 ~~g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 213 (426)
......+....+.+... .+......+..++.++...... ..+.+.. ..+.. +..+...+...
T Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~--gi~~~~~-------------~~~~~~~~~~i~~~Yt~~ 178 (523)
T PRK10484 114 TTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELL--GISYGAA-------------IWLLVWLIGIIGAIYAVF 178 (523)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhc--CCcHHHH-------------HHHHHHHHHHHHhhhhhh
Confidence 77766666666555443 3333334444444422110000 1111100 11111 12234556666
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc---------------cccCCCCCCC----CchHHHHHHHHHHHHHhhh
Q 014358 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV---------------DVSNWSPFAP----NGFKEILTGATVVFFAYVG 274 (426)
Q Consensus 214 ~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~---------------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~G 274 (426)
-|.|...+...+-.++.++..+++.+..+... +++.+..+.+ ..+..++.++......+.+
T Consensus 179 GGl~aV~~TD~iQ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (523)
T PRK10484 179 GGLKAVAVSDTINGIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWC 258 (523)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHh
Confidence 78888888877777666655443332222111 1111111111 1222222222221111111
Q ss_pred -HHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHH---HHhcccccccCCCChHHHHHHHcChhHHHHHHHHHHH
Q 014358 275 -FDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLV---LTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAV 350 (426)
Q Consensus 275 -~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (426)
-....+-.=-.||+ |+..|+...+......+++...+. .....|++..+.+..+.....+..++++.-++...++
T Consensus 259 ~~q~~~qR~~aak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~il 337 (523)
T PRK10484 259 TNQSIVQRALGAKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAAVLF 337 (523)
T ss_pred CCHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHHHHH
Confidence 11222223334663 678888877765554444433221 1122232211233445555556666666666777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014358 351 AGLTTTLLVGLYVQSRL 367 (426)
Q Consensus 351 ~s~~~~~~~~~~~~sR~ 367 (426)
.+..++..+.+++.|-.
T Consensus 338 AA~mST~~s~l~s~st~ 354 (523)
T PRK10484 338 GAILSTFNGFLNSASTL 354 (523)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777776654
No 81
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=98.05 E-value=0.013 Score=55.69 Aligned_cols=275 Identities=17% Similarity=0.149 Sum_probs=146.4
Q ss_pred HHHhhhhhcchhhhchHHhhhhcCch---HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchhHHHHHHH
Q 014358 68 LIGVGASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFA 144 (426)
Q Consensus 68 ~l~~~~~ig~gi~~~~~~~~~~~G~~---~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~ 144 (426)
++.++--.|+|=...|...-..+|.. +.+++++.++..=..+.. +-. . +||.+.=..+..||+.|.+...
T Consensus 12 fmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiI----a~a--~-~g~~~~~l~~~i~~~fg~~f~~ 84 (431)
T COG1114 12 FMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGII----AVA--L-YGGGVESLATRIGPWFGVLFAI 84 (431)
T ss_pred HHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHH----Hhh--c-cCCCHHHHhhhccchHHHHHHH
Confidence 33444447777777777666667753 566666665543222211 111 1 4555555556668888876654
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhhHHH
Q 014358 145 QLMLDYHIGAASIA--RSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVL 222 (426)
Q Consensus 145 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 222 (426)
...++- .+..+ +..+..... +..|..++..+. ...+..+++..+..++.+..-|..-|+
T Consensus 85 ~iyLsI---GPffAiPRt~~vsfe~--~i~p~~~~~~~~--------------~l~ifs~ifF~ia~~~sl~psklid~v 145 (431)
T COG1114 85 AIYLSI---GPFFAIPRTGAVSFEV--GISPLLGDSSLP--------------SLFIFSVIFFAIAYLFSLNPSKLIDRV 145 (431)
T ss_pred HHHHHh---cccccCCcccchhHHH--hhhcccCCCcch--------------HHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 433321 11111 111110000 022332222222 226777888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccCCC--------CCCCCch-HHHHHHHHHHHHHhhhHHHHhhhhhhhCCCCCChh
Q 014358 223 NSCMTVVKVIIVIVVIFAGAFEVDVSNWS--------PFAPNGF-KEILTGATVVFFAYVGFDAVANSAEESKKPQRDLP 293 (426)
Q Consensus 223 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p 293 (426)
-.+++..+++.++.+.+..+.+.+.+... |+. .|+ .++...=..+..+|...-.-+.-....+++| +..
T Consensus 146 Gk~LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~-~GfleGY~TMDaLAal~FgivIv~alk~~g~~~~~-~~~ 223 (431)
T COG1114 146 GKFLTPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFS-KGFLEGYLTMDALAALAFGIVIVNALKSKGVTTKK-QII 223 (431)
T ss_pred HHHHhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHH-HHHhcchHHHHHHHHHHHHHHHHHHHHHhccCcHH-HHH
Confidence 99999999999998888877654433221 111 111 1122222234444444443343344444443 333
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHhcccccccCC----CChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 294 IGILGSLLICAALYVGVSLV--LTGMVPYKFLDE----DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (426)
Q Consensus 294 ~ai~~~~~~~~v~y~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~ 367 (426)
|-...+-++..+.-.+.-.. ..+..+.+.... .+-+....++..|+.+..++.+.+.++++.+..+...+++..
T Consensus 224 ~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aef 303 (431)
T COG1114 224 KYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEF 303 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333222222221111 222222222222 123333446677788888999999999999999999998876
Q ss_pred HHH
Q 014358 368 YLG 370 (426)
Q Consensus 368 l~~ 370 (426)
...
T Consensus 304 F~~ 306 (431)
T COG1114 304 FSK 306 (431)
T ss_pred HHH
Confidence 443
No 82
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.03 E-value=0.0086 Score=57.58 Aligned_cols=256 Identities=14% Similarity=0.145 Sum_probs=129.2
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014358 90 AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL 169 (426)
Q Consensus 90 ~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (426)
.|...+|..+++.++..+.-...++++..- ..+..+-.++.+||.+++.......++.......+....+.-++.++
T Consensus 11 ~Gy~Llw~lll~~~~~~~~q~~~~R~~~~T---g~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~ 87 (358)
T PF01566_consen 11 YGYSLLWVLLLSNLLKYVFQEMAARLGIVT---GKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF 87 (358)
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555555544444444444444332 34677777899999999999888888877777777777666665532
Q ss_pred ccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc-cccc-
Q 014358 170 ELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF-EVDV- 247 (426)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~-~~~~- 247 (426)
+ .|.+ ....+..+....+.....+.+++++.++..+..+..+.+.+..+. ..+.
T Consensus 88 g--------~~~~----------------~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~ 143 (358)
T PF01566_consen 88 G--------IPLW----------------IWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWG 143 (358)
T ss_pred C--------CCcH----------------HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 1 2222 122222222222222123445555555555544443333332222 1111
Q ss_pred ---cCCC-CCCCCchHHHHHHHHHHHHHhhhHHHHhhhhhhhC---CCCC---C--hhHH---HHHHHHHHHHHHHHHHH
Q 014358 248 ---SNWS-PFAPNGFKEILTGATVVFFAYVGFDAVANSAEESK---KPQR---D--LPIG---ILGSLLICAALYVGVSL 312 (426)
Q Consensus 248 ---~~~~-~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k---~p~k---~--~p~a---i~~~~~~~~v~y~~~~~ 312 (426)
+.+. |-.|. ...+...+...-++...++...+-+-..+ +++| + .+.. ...+.....++-..+.+
T Consensus 144 ~~~~g~~~P~~p~-~~~~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i 222 (358)
T PF01566_consen 144 EVARGLVVPSIPG-PGSLLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILI 222 (358)
T ss_pred HHhhhccCCCCcc-hhHHHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 22233 12333344444444444544332222221 1211 1 2222 22222222222222222
Q ss_pred HHHhccc--ccccCCCChHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 014358 313 VLTGMVP--YKFLDEDAPLSDAFASRGL-KYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGR 373 (426)
Q Consensus 313 ~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~a~ 373 (426)
+...... ..+..+.+...+.++...+ ++...++.++.+.+.+++......+.+|.+.+.-+
T Consensus 223 ~~A~~l~~~~~~~~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~ 286 (358)
T PF01566_consen 223 VAAAVLYPGGSEVETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLG 286 (358)
T ss_pred HHHHHhcccccchhhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhc
Confidence 1122221 1223333455566777667 79999999999999999999999999998887653
No 83
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=98.01 E-value=0.014 Score=56.57 Aligned_cols=272 Identities=14% Similarity=0.072 Sum_probs=143.5
Q ss_pred hhhhcchhhhchHHhhhhcCch---HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchhHHHHHHHHHHH
Q 014358 72 GASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLML 148 (426)
Q Consensus 72 ~~~ig~gi~~~~~~~~~~~G~~---~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~~ 148 (426)
+--.|+|=...|...-..+|.. +.+++++.++..=..+. ++... . +|+..+..+ ..||+.+.+......+
T Consensus 19 amFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgi----iava~-~-~g~~~~l~~-rv~~~f~~~f~~~i~l 91 (439)
T PRK15433 19 ALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTV----VALAK-V-GGGVDSLST-PIGKVAGVLLATVCYL 91 (439)
T ss_pred HHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHH----HHHhh-c-CCCHHHHhh-hcchHHHHHHHHHHHH
Confidence 3348888888888777778863 55666665554322221 11111 2 244444444 4578877766544332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 014358 149 DYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTV 228 (426)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 228 (426)
.--... +..+..+....- .+.|...+ + .....+..+++..++.++..+.-|...++-.+++.
T Consensus 92 ~IGP~~-aiPRtaavsfEm--~i~p~~~~----~-----------~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP 153 (439)
T PRK15433 92 AVGPLF-ATPRTATVSFEV--GIAPLTGD----S-----------ALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAP 153 (439)
T ss_pred HHhhcc-ccCCccccchhh--eeeccCCc----c-----------cHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHH
Confidence 210000 001111110000 01122110 0 11224577788888899999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccCCCC---CCCCch-H------HHHHHHHHHHHHhhhHHHHhhhhhhhCCCCCChhHHH--
Q 014358 229 VKVIIVIVVIFAGAFEVDVSNWSP---FAPNGF-K------EILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGI-- 296 (426)
Q Consensus 229 ~~i~~~~~~~i~~~~~~~~~~~~~---~~~~~~-~------~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai-- 296 (426)
+.++.++.+++.++.+...+.-.+ +..+.+ . +-+-++....| ...-.-+--....||+ |++.|.+
T Consensus 154 ~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~F--g~iii~~i~~~G~~~~-~~~~k~t~~ 230 (439)
T PRK15433 154 LKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVF--GIVIVNAARSRGVTEA-RLLTRYTVW 230 (439)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHHcCCCCH-HHHHHHHHH
Confidence 999999999888887632221111 111100 1 11222222222 2222222223335554 3344443
Q ss_pred --HHHHHHHHHHHHHHHHHHHhccc-cccc-CCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014358 297 --LGSLLICAALYVGVSLVLTGMVP-YKFL-DEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (426)
Q Consensus 297 --~~~~~~~~v~y~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ 371 (426)
..+.....++|......-....+ .++. +..+-.........++++..++.+.+.++++++..+..+++++.....
T Consensus 231 ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~ 309 (439)
T PRK15433 231 AGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQY 309 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444455444443332222 1111 122233344466677889999999999999999999999999876553
No 84
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.94 E-value=0.025 Score=55.67 Aligned_cols=89 Identities=11% Similarity=0.084 Sum_probs=52.1
Q ss_pred hcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-chhhHHHHHhchhHHHHHHHHHHHHHHHH
Q 014358 75 VGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVG-GAYLYAYTAFNELTAFLVFAQLMLDYHIG 153 (426)
Q Consensus 75 ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~G-g~y~~~~~~~g~~~g~~~g~~~~~~~~~~ 153 (426)
+|.|-..+..+.-+..|...+|..+++.++ .+.+-|++.|+-...| +.-+-.++.+||.+++.......++....
T Consensus 48 idpG~i~t~~~aGA~~Gy~LLW~llls~~~----~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~ 123 (439)
T PRK00701 48 MDPGNWATNIQGGSQFGYTLLWVILLSNLM----AMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMAT 123 (439)
T ss_pred ecchHHHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHH
Confidence 444433333333333444555555555544 4455555555443133 78889999999998887766666666666
Q ss_pred HHHHHHHHHHHHHH
Q 014358 154 AASIARSLASYVVS 167 (426)
Q Consensus 154 ~~~~~~~~~~~~~~ 167 (426)
...+....+.-++.
T Consensus 124 ~~~e~~G~a~al~l 137 (439)
T PRK00701 124 DLAEVIGAAIALKL 137 (439)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666655555554
No 85
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=97.86 E-value=0.038 Score=54.85 Aligned_cols=338 Identities=15% Similarity=0.072 Sum_probs=159.4
Q ss_pred cccccChHHHHHHHhhhhhcchhhhchH--Hhhhh--------cCc-------------h-HHHHHHHHHHHHHHHHHHH
Q 014358 57 LLRRLGLFELVLIGVGASVGAGIFVVTG--TVARD--------AGP-------------G-VTISFLLAGAASVLNALCY 112 (426)
Q Consensus 57 l~r~l~~~~~~~l~~~~~ig~gi~~~~~--~~~~~--------~G~-------------~-~~~~~il~~~~~~~~~~~~ 112 (426)
-|.++|.++-+.+.++.-+|.|+..-.. .+... .+. . .+-+|.+-++.+++.++.+
T Consensus 71 ~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~ 150 (485)
T PF02028_consen 71 AKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFF 150 (485)
T ss_dssp S--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheee
Confidence 3557899999999999888888765432 11100 111 0 2445555566666777766
Q ss_pred HHHHhhCCCCCCchhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccc
Q 014358 113 AELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLG 192 (426)
Q Consensus 113 ~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (426)
..-.+.+.. +...|-...+...+..|.++=....++.+...+...-..+..++.-++ ..++.+....
T Consensus 151 y~k~~~~~~-ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~--~~~Gi~~~~~---------- 217 (485)
T PF02028_consen 151 YNKGKPLRI-SSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLS--SLFGIPNTFG---------- 217 (485)
T ss_dssp HTS---SSG-GGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCTSSSTHH----------
T ss_pred eecCCCCch-hhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHcCCCCchH----------
Confidence 664443333 445555555444455677777666666666655555555555554333 1111111111
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHhhhcc-----c---------cccc-CCCCC
Q 014358 193 GTLSINILAPILLALLTIVLCWGV----GESSVLNSCMTVVKVIIVIVVIFAGAF-----E---------VDVS-NWSPF 253 (426)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~i~~~~~~~i~~~~-----~---------~~~~-~~~~~ 253 (426)
...++..++.++.+.-...|+ |...+++..+....++.++++.=..+. . .+.. +-+++
T Consensus 218 ---~~~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~Gpt~fil~~~~~s~G~yl~~f~~~s~~t~~~ 294 (485)
T PF02028_consen 218 ---LQIIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLFGPTVFILNLFTESIGDYLQNFFRMSLWTDPF 294 (485)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT--TTT
T ss_pred ---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 113333444444444444454 444444444443333333322111110 0 0111 11233
Q ss_pred CCCc-hHHHHHHHHHHHHHhhhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhccc-ccccCCC-----
Q 014358 254 APNG-FKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVP-YKFLDED----- 326 (426)
Q Consensus 254 ~~~~-~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~-~~~~~~~----- 326 (426)
.+.+ |.+.+..+..+.|.--+.-....++.-.|. |+++.-+...++...+. ...-+.+.+... ..+....
T Consensus 295 ~~~~~w~~~WTvFYwaWWiawaPfvG~FiArISkG--RTIRE~il~~~~~psl~-~~~wf~ifGg~al~~~~~g~~~~~~ 371 (485)
T PF02028_consen 295 GNSGQWPQDWTVFYWAWWIAWAPFVGLFIARISKG--RTIREFILGVLLVPSLF-CFLWFSIFGGYALYLQLSGAGDLAA 371 (485)
T ss_dssp TTTTHHHHHTHHHHHHHHHHTHHHHHHHHHHCTTT--SBHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCTSS-HHH
T ss_pred cCcccccCCCHHHHHHHHHHHHHHHHHHHhhhcCC--cCHHHHHHHHHHhhHHH-HHHHHHHHCchHHhhHhhhhhhHHH
Confidence 3444 767776776666655555556666666664 78855554444444433 333333322111 1111111
Q ss_pred ----ChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHH--HHH
Q 014358 327 ----APLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVW--VGI 400 (426)
Q Consensus 327 ----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~--~~~ 400 (426)
++-...++....-++..++....++..+....+..-+++..+..++.+| +++-..+.+..|- ..+
T Consensus 372 ~~~~g~~~a~~~~l~~lP~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~---------~~ep~~~~ri~W~~~~~~ 442 (485)
T PF02028_consen 372 ANEQGPEAALFAFLEQLPLSKILSILFLILIFIFFVTSADSATYVLAMLSSKG---------DEEPPRWLRIFWGLIIGA 442 (485)
T ss_dssp HHHH-HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT---------TSSS-HHHHHHHHHHHHH
T ss_pred HhhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC---------CCCCchHHHHHHHHHHHH
Confidence 1111122211111233455555555566666667777888888888665 1111222333322 233
Q ss_pred HHHHHHhhhCHHHHHHHHHHHH
Q 014358 401 VAGILAGLFNVRVLSHILSVGT 422 (426)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~~~~ 422 (426)
++..+...++.+++.++..+..
T Consensus 443 ~a~~ll~~ggl~~lq~~~ii~~ 464 (485)
T PF02028_consen 443 LAIVLLLIGGLDALQSASIIGG 464 (485)
T ss_dssp HHHHHHHHHSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3444444557777766655543
No 86
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=97.80 E-value=0.0035 Score=60.14 Aligned_cols=307 Identities=14% Similarity=0.099 Sum_probs=157.3
Q ss_pred CCCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCc--hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHH
Q 014358 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP--GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYA 130 (426)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~--~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~ 130 (426)
..++.+|..++|+....=.+..+..+-+...+..++.|=. ..++..+++-++.......-+. .|..|+..
T Consensus 48 Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~f~~lns~--------~G~~yhIs 119 (572)
T KOG2466|consen 48 PVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAIFLVLNSR--------PGSDYHIS 119 (572)
T ss_pred cCCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHHHHHHccC--------CCcccccc
Confidence 4556678999999998877777777777777777775442 2666666666554433332222 34555543
Q ss_pred -----HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccccCCCccccCCCccccccchhhHHHHHHH
Q 014358 131 -----YTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE-LFPFFKENIPSWIGHGGEEFLGGTLSINILAPIL 204 (426)
Q Consensus 131 -----~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (426)
|-.||-..+-.--..-.+.-++.-..++...++.++.++. .++. ....|.+....+ .-....++..+
T Consensus 120 Fpv~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~-~~hipntl~~~~------~tt~e~i~FfI 192 (572)
T KOG2466|consen 120 FPVLSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKS-FSHIPNTLGKPG------TTTYEFIGFFI 192 (572)
T ss_pred eeeeeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhh-hhcCccccCCCC------CchHHHHHHHH
Confidence 3345544443333344444455556666667776666555 3333 224444443111 11123444444
Q ss_pred HHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccc--c-CCCCCCCCchHHHHHHHHHHHHHhhhHH----
Q 014358 205 LALL-TIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDV--S-NWSPFAPNGFKEILTGATVVFFAYVGFD---- 276 (426)
Q Consensus 205 ~~~~-~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~G~e---- 276 (426)
..+. ..+..++....+++...-.+......+.+.+..+.+.+. + +..+-...+....+..+-.....+.++-
T Consensus 193 Fwv~s~~~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~ 272 (572)
T KOG2466|consen 193 FWVASLPFYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIV 272 (572)
T ss_pred HHHHhhheeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhc
Confidence 4443 344556778888888877777777777777877776654 1 1112223332222222223344444444
Q ss_pred HHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhccc-cccc-CC--CChHHHHHHH-------cChhHHHHHH
Q 014358 277 AVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVP-YKFL-DE--DAPLSDAFAS-------RGLKYVSVLI 345 (426)
Q Consensus 277 ~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~-~~~~-~~--~~~~~~~~~~-------~~~~~~~~~~ 345 (426)
.....+.-.|+|.+ .+-+-+.++.+...+ ..+.-..... .+.+ .. -+|+ +++.+ .|.+.+..++
T Consensus 273 N~pDFsRF~ksp~a-~~~~Ql~alp~~~~l---~~liGVlv~sa~~~iYG~~~W~Pl-dil~~~l~~~y~~G~RAgvFfi 347 (572)
T KOG2466|consen 273 NAPDFSRFAKSPNA-IWWGQLIALPLPFGL---TPLIGVLVTSASKIIYGTNYWSPL-DILNQWLDTNYSAGARAGVFFI 347 (572)
T ss_pred cCchhHhhcCCCCc-cchhhhhhhhhhhhh---hhheeeEehhhhhhhhcccccCHH-HHHHHHhccccccccchhhhHH
Confidence 34444444556532 333333322222221 1111111000 0111 11 1244 33322 3566788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCchhhhh
Q 014358 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAK 383 (426)
Q Consensus 346 ~~~~~~s~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~ 383 (426)
.+...++.+++..+.-..++ ++.--+.+||++.-
T Consensus 348 ~~~f~laql~~NISan~vaa----gnDl~~L~PkyinI 381 (572)
T KOG2466|consen 348 GFGFALAQLGTNISANSVAA----GNDLSALLPKYINI 381 (572)
T ss_pred HHHHHHHHHhcchhcccccc----chhhHhhCcceEEe
Confidence 88888888886544332222 22333578877655
No 87
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.77 E-value=0.0023 Score=63.43 Aligned_cols=242 Identities=13% Similarity=0.091 Sum_probs=118.2
Q ss_pred CcccccChHHHHHHHhhhhhcchhhhchHHhhhhc-Cc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHH
Q 014358 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDA-GP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (426)
Q Consensus 56 ~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~-G~-~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~ 133 (426)
+.+|+-++++.+.+=++..+....+..-......+ +. .++++.+++.++........+.++.+.-. ......|..
T Consensus 4 ~~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl---~~~v~sR~~ 80 (440)
T PF02133_consen 4 ESERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGL---PTMVLSRAS 80 (440)
T ss_dssp -GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC------HHHHTTTT
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCC---Cchhcchhc
Confidence 45688889999988777665555443333332322 22 26677777666665555555555555533 566777778
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHH
Q 014358 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILEL-FPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (426)
Q Consensus 134 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (426)
||.+-+.+......+..+...+.+....++.+..+... ++. +.+... ..........+..++.-++.....
T Consensus 81 FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~-----~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~ 152 (440)
T PF02133_consen 81 FGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGS-----FLWIGN---AIIGIALPLWVCFFIFWLIQTLFA 152 (440)
T ss_dssp S-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------HH--------------HHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCc-----chhhhh---hhhcchhhHHHHHHHHHHHHHHHH
Confidence 99988888888888888888888888888888886551 110 000000 000000000122233344555567
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccC-CC-CCCCCchHHHHHHHHHHHHHhh-hHHHHhhhhhhhCCCC
Q 014358 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSN-WS-PFAPNGFKEILTGATVVFFAYV-GFDAVANSAEESKKPQ 289 (426)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~-G~e~~~~~~~E~k~p~ 289 (426)
..|.|...+++.+...+..+..+..........+... .+ +..+.....+..++....-... ..-.++.++...|++
T Consensus 153 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~- 231 (440)
T PF02133_consen 153 IYGMKALRRLAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSD- 231 (440)
T ss_dssp CTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--H-
T ss_pred hcCHHHHHhHHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCC-
Confidence 7788888888887776655554444444333332211 11 1111111123433333222222 222234666666764
Q ss_pred CChhHHHHHHHHHHHHHHHH
Q 014358 290 RDLPIGILGSLLICAALYVG 309 (426)
Q Consensus 290 k~~p~ai~~~~~~~~v~y~~ 309 (426)
|+..++...+.........+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~ 251 (440)
T PF02133_consen 232 TSAWWGFWLGFPGGFIPFVL 251 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeehhhhHHHHHHH
Confidence 34455555555444444433
No 88
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=97.70 E-value=0.0071 Score=58.69 Aligned_cols=250 Identities=13% Similarity=0.079 Sum_probs=136.7
Q ss_pred ccccChHHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhch
Q 014358 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (426)
Q Consensus 58 ~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~ 136 (426)
+++.+.+..+.-...++.|+|++..|.. ....|-. .++...+.+.+.....+...+.+.+.++ .-+-.-.++.+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~a-fk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~--~ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYA-FKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE--RTYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHH-HHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC--CCHHHHHHHHcCC
Confidence 4566777888888888999999888774 4556764 7777888888888999999999999998 3555555566665
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchh-hHHHHHHHHHHHHHHHHhh
Q 014358 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLS-INILAPILLALLTIVLCWG 215 (426)
Q Consensus 137 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g 215 (426)
.-.+......-+... ....+.....+.+..+... . ..++|.... +..... ..+....++...++.. .
T Consensus 80 ~g~~~~~v~~~~~~~-g~i~yliiigd~~p~~~~~-~----~~~~~~~~~----~~~~~~~ill~~~~~i~pLsl~k--~ 147 (411)
T KOG1305|consen 80 LGKVDAAVAVKCFGV-GMVSYLIIIGDLLPGFIRS-L----FLDEEGGSH----YLDRNFLILLVLLFIILPLSLLK--N 147 (411)
T ss_pred CceeeehhhHHhhhc-cceEEEEEEccccchhhhh-c----ccccccccc----cccceeEeehHHHHHHHHHHHHH--h
Confidence 442211111111000 0011111111111111110 0 011111000 011111 1222222222222222 2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhcccccc--cCCCCCCCCch--HHHHHHHHHHHHHhhhHHHHhhhhhhhCCCC-C
Q 014358 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEVDV--SNWSPFAPNGF--KEILTGATVVFFAYVGFDAVANSAEESKKPQ-R 290 (426)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~-k 290 (426)
....+.... ......+.++.+.+........ ....+..+++. .+++.++....++|...+...-...|.|||+ |
T Consensus 148 l~~Lk~tS~-~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~ 226 (411)
T KOG1305|consen 148 LDSLKYTSA-LSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVK 226 (411)
T ss_pred hhhHHHHHH-HHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHH
Confidence 222222222 2222222222222222221111 11112223333 5789999999999999999999999999986 6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 014358 291 DLPIGILGSLLICAALYVGVSLVLTGMVPYKFL 323 (426)
Q Consensus 291 ~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~ 323 (426)
++.+....+...+..+|...........+++..
T Consensus 227 ~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~ 259 (411)
T KOG1305|consen 227 KIQRVSNIAIILATLIYLLTGLFGYLTFGDLVK 259 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhheecccch
Confidence 889999999999999999988888877765543
No 89
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.27 Score=47.81 Aligned_cols=281 Identities=14% Similarity=0.094 Sum_probs=128.6
Q ss_pred cccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-CchhhHHHHHhchh
Q 014358 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVV-GGAYLYAYTAFNEL 137 (426)
Q Consensus 59 r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~-Gg~y~~~~~~~g~~ 137 (426)
|++....--.+....-++.|-+....+.-+.-|...++..++.-++ .+..=|++.++-..+ -+.-+-.+|.++|+
T Consensus 15 ~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~----~~~~Q~~~arLgivTG~~laq~ir~~y~~~ 90 (416)
T COG1914 15 KLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLM----AYILQELSARLGIVTGKGLAEAIRERYLPG 90 (416)
T ss_pred HHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCcHHHHHHHHccch
Confidence 3344444444433333455544443333333344444444444444 444444444432212 35777788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhh
Q 014358 138 TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVG 217 (426)
Q Consensus 138 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (426)
+++.......+......-.+....+-.++.+++ .| ..++.++..+..++.... |
T Consensus 91 ~~~~~~~~~~i~~~at~iae~~G~aial~ll~~--------ip-----------------~~~g~iItav~~~iil~~-~ 144 (416)
T COG1914 91 LGILLWILAEIAGIATDIAEVAGIAIALNLLFG--------IP-----------------LIIGAVITAVDVLIILLL-K 144 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------Ch-----------------HHHHHHHHHHHHHHHHHh-c
Confidence 998888777777777777777777776666443 11 223333333333332222 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccccc---cCCCCCCCCch--HHHHHHHHHHHHHhhhHHHHhhhhhhhCC---CC
Q 014358 218 ESSVLNSCMTVVKVIIVIVVIFAGAFEVDV---SNWSPFAPNGF--KEILTGATVVFFAYVGFDAVANSAEESKK---PQ 289 (426)
Q Consensus 218 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~G~e~~~~~~~E~k~---p~ 289 (426)
..++++.+...+.++..+.+....+..... ....++.|... ..........-++..+ +....-++.+++ .+
T Consensus 145 ~~r~~E~~v~~l~~~~~i~~~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP-~i~y~~s~~v~~~~~~~ 223 (416)
T COG1914 145 GYRLLERVVLILGLVLVILFVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMP-HILYLHSSLVQDAGIKG 223 (416)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhH-HHHHhhcceeccccccc
Confidence 555666666655555555555444443211 01111323221 1233333334444444 444444444443 23
Q ss_pred CChhHHHHHHHHHHHHHHH---HHHHHHH----hccccccc-CCCChHHHHHH---HcChhHHHHHHHHHHHHHHHHHHH
Q 014358 290 RDLPIGILGSLLICAALYV---GVSLVLT----GMVPYKFL-DEDAPLSDAFA---SRGLKYVSVLISFGAVAGLTTTLL 358 (426)
Q Consensus 290 k~~p~ai~~~~~~~~v~y~---~~~~~~~----~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~ 358 (426)
|..++.+..+.+-..+-++ +...++. .....++. ...++..++++ ...++....++.+..+.+..++..
T Consensus 224 ~~~~~~~~~~~~d~~i~~~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~ 303 (416)
T COG1914 224 EENLRALRYSRIDTIIGMIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTV 303 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHH
Confidence 4444554444222222222 1111111 11111111 22223444443 233466666666666666666666
Q ss_pred HHHHHHHHHHHH
Q 014358 359 VGLYVQSRLYLG 370 (426)
Q Consensus 359 ~~~~~~sR~l~~ 370 (426)
..-++....+..
T Consensus 304 ~~~~a~~~~~~g 315 (416)
T COG1914 304 VATYAGQIVMEG 315 (416)
T ss_pred HHhhhhHHHHHh
Confidence 655555554433
No 90
>PRK09928 choline transport protein BetT; Provisional
Probab=97.08 E-value=0.45 Score=48.86 Aligned_cols=77 Identities=6% Similarity=-0.155 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Q 014358 341 VSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSV 420 (426)
Q Consensus 341 ~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 420 (426)
+..+..+..++..+....+..-+++-++..++-.|.-|+. --++...=.+++++ ++++..++..+..+++.++.-+
T Consensus 407 ~~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~---~pp~~~RifW~v~i-g~la~~LL~~GGL~aLQt~sii 482 (679)
T PRK09928 407 AFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINS---DAPNWLRVFWSVAI-GLLTLGMLMTNGISALQNTTVI 482 (679)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCC---CCCcceeeHHHHHH-HHHHHHHHHhcCHHHHHHHHHH
Confidence 3444444444444555556677778888887765532210 01111222334333 3344444555566666655444
Q ss_pred H
Q 014358 421 G 421 (426)
Q Consensus 421 ~ 421 (426)
.
T Consensus 483 ~ 483 (679)
T PRK09928 483 M 483 (679)
T ss_pred H
Confidence 3
No 91
>PRK09950 putative transporter; Provisional
Probab=96.92 E-value=0.53 Score=47.00 Aligned_cols=25 Identities=8% Similarity=0.143 Sum_probs=20.4
Q ss_pred ccccChHHHHHHHhhhhhcchhhhc
Q 014358 58 LRRLGLFELVLIGVGASVGAGIFVV 82 (426)
Q Consensus 58 ~r~l~~~~~~~l~~~~~ig~gi~~~ 82 (426)
|.++|.++-+.+.++.-+|.|+..-
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllfw 105 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLYW 105 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHHH
Confidence 5789999999999998888886543
No 92
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.91 E-value=0.46 Score=46.17 Aligned_cols=190 Identities=7% Similarity=0.036 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhH-HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 014358 94 VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLY-AYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELF 172 (426)
Q Consensus 94 ~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~-~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (426)
..++|..+. ....+..+|--+++-+ . -+-++ ..|.-.+...++.+..-.+.-..+...+....+..+.-+++
T Consensus 79 Y~iG~~~Gy---~i~~fL~A~~LRk~Gk-y-T~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g-- 151 (529)
T COG4147 79 YSIGWTGGY---PILLFLIAEYLRKLGK-Y-TFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG-- 151 (529)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhcCC-c-chHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC--
Confidence 445555444 3556777888888755 2 33333 34555567788888888887788888888888888877554
Q ss_pred cccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccc----
Q 014358 173 PFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS---- 248 (426)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~---- 248 (426)
.+.+ .-+.+..++...++.+-|.|...+.|.+=.++.+...++..+....+.+++
T Consensus 152 ------v~~~---------------vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~ 210 (529)
T COG4147 152 ------VPYH---------------VGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPL 210 (529)
T ss_pred ------CCce---------------eehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchH
Confidence 2222 224556666677777889999999988877777776666665554432111
Q ss_pred -----------CCCCCCC-----CchHHHHHHHHHHHHHhhhHHHHhhhhhh---hCCCCCChhHHHHHHHHHHHHHHHH
Q 014358 249 -----------NWSPFAP-----NGFKEILTGATVVFFAYVGFDAVANSAEE---SKKPQRDLPIGILGSLLICAALYVG 309 (426)
Q Consensus 249 -----------~~~~~~~-----~~~~~~~~~~~~~~~~~~G~e~~~~~~~E---~k~p~k~~p~ai~~~~~~~~v~y~~ 309 (426)
+.....+ ..+.+++.-....++ |.-...|.--. +.| .|+.+|...++...+..+|+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~---GTAgLPHil~RFfTvp~-~k~AR~Sv~wA~~fIg~fYi~ 286 (529)
T COG4147 211 FAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMV---GTAGLPHILMRFFTVPD-AKEARKSVFWATGFIGIFYIL 286 (529)
T ss_pred HHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHH---ccCCCCeEEEEEEecCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 123334333333333 44444443322 223 256678888999999999998
Q ss_pred HHHHHH
Q 014358 310 VSLVLT 315 (426)
Q Consensus 310 ~~~~~~ 315 (426)
..+.-.
T Consensus 287 ~~~ig~ 292 (529)
T COG4147 287 TPIIGA 292 (529)
T ss_pred HHHHHH
Confidence 766543
No 93
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=96.67 E-value=0.78 Score=45.43 Aligned_cols=33 Identities=15% Similarity=-0.058 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014358 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSIL 169 (426)
Q Consensus 137 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (426)
.+|..+-.+.+++.++..+......+..++.-+
T Consensus 187 ~~G~~IDi~aiiaTl~GiATsLG~ga~qi~~Gl 219 (537)
T COG1292 187 PIGHAVDILAIIATLFGIATSLGLGALQLTAGL 219 (537)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 467777777788777777766666666665533
No 94
>PLN00151 potassium transporter; Provisional
Probab=96.59 E-value=0.46 Score=49.44 Aligned_cols=213 Identities=11% Similarity=0.028 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc---cccccCCCCCCCCchHH--------HHHHHH
Q 014358 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF---EVDVSNWSPFAPNGFKE--------ILTGAT 266 (426)
Q Consensus 198 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~ 266 (426)
..+++++++.++.+-.+|...++++ ++.+.++-++.+...++. ..++.-+..+.|.-... -+..+.
T Consensus 275 V~Is~~ILv~LF~~Q~~GT~kVg~~---FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~~~~~gw~~LG 351 (852)
T PLN00151 275 VMISVAFLVILFSVQRFGTSKVGFA---FGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFKRNSTKAWSALG 351 (852)
T ss_pred hhHHHHHHHHHHHHHhccchhhhhh---hccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHHhCCCceEEEec
Confidence 4577777777888888886555554 455555555555544444 33333333333321111 122344
Q ss_pred HHHHHhhhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHHH
Q 014358 267 VVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLIS 346 (426)
Q Consensus 267 ~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (426)
.++.+++|-|+.- ++--.-.+|.+..+-..-+.=+.++--+..-+....-| ++ ..+||... ...++.+-+.
T Consensus 352 gVvLciTGaEALf--ADLGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p-~~--~~npFy~s----vP~~~~wP~~ 422 (852)
T PLN00151 352 GCVLCATGSEAMF--ADLGYFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNP-DS--AEQIFFSS----VPSSLFWPVF 422 (852)
T ss_pred ceeeeeccchhhh--cccCCCCccceeeeehhhHHHHHHHHHcchHHHHhcCc-cc--ccCcHHHh----CCchhHHHHH
Confidence 5566778988653 22233345566655444333333333333333332222 11 23354433 3334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCch-hhhhhcCC-C-C--CchHHHHHHHHHHHHHHhh-hCHHHHHHHHHH
Q 014358 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPK-R-H--TPVHSQVWVGIVAGILAGL-FNVRVLSHILSV 420 (426)
Q Consensus 347 ~~~~~s~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~~-~-~--~P~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~ 420 (426)
+...++..-+..+...++=-+..+.-+-|.+|+ +..+.+++ + + .|..-.++ .+.++++.+. .+.+.+.+.+.+
T Consensus 423 vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~L-mv~~i~v~l~F~~s~~l~~AYGi 501 (852)
T PLN00151 423 LIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFL-LVMCLVVVCSFRSITDIGNAYGI 501 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHH-HHHHHhheeeecCHHHHHHHhhh
Confidence 444444444334444444444445556689994 22333332 2 2 45443333 3333333333 377777777766
Q ss_pred HHH
Q 014358 421 GTL 423 (426)
Q Consensus 421 ~~l 423 (426)
++.
T Consensus 502 AV~ 504 (852)
T PLN00151 502 AEV 504 (852)
T ss_pred hhh
Confidence 653
No 95
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=96.56 E-value=0.0095 Score=54.74 Aligned_cols=286 Identities=12% Similarity=0.085 Sum_probs=152.3
Q ss_pred CCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHH----HHHHHHHhhC--CCCCCchhh
Q 014358 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNA----LCYAELASRF--PAVVGGAYL 128 (426)
Q Consensus 55 ~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~----~~~~el~~~~--p~~~Gg~y~ 128 (426)
.+-+.+++.++..+-.-..+=|.=+..+| .++-.+|..++.+.+..+.+...++ -|+.|=..-- -+ ---.|.
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP-~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVr-vRdsYv 188 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLP-IAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVR-VRDSYV 188 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccc-eeeeEcchhHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEE-eehhHH
Confidence 34456899999887665544322222222 3334467666666655554443332 2333322100 00 012333
Q ss_pred HHHHH-hchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHH
Q 014358 129 YAYTA-FNELTA-FLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLA 206 (426)
Q Consensus 129 ~~~~~-~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (426)
-..+. ++|.+| ..+.....+-....+..+....++.++. .+|....+...| .++.-+.++
T Consensus 189 aIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~---~fP~~svd~~sW---------------m~i~~a~LL 250 (524)
T KOG4303|consen 189 AIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQS---CFPGLSVDKASW---------------MMITSASLL 250 (524)
T ss_pred HHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhc---cCCCCCccccch---------------hhhhhHHHh
Confidence 33343 677666 6666667777777788888888898888 777665556666 345555555
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCC-CCchHHHHHHHHHHHHHhhhHHHHhhhhhhh
Q 014358 207 LLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFA-PNGFKEILTGATVVFFAYVGFDAVANSAEES 285 (426)
Q Consensus 207 ~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 285 (426)
-+.++ ...|.+.|+....+..+++.-++++..++...+.=.|.... .-+...+-..+..+.|+|+.---..++-+.+
T Consensus 251 pc~FL--k~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM 328 (524)
T KOG4303|consen 251 PCSFL--KDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNM 328 (524)
T ss_pred hhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeecccccccc
Confidence 55544 56788888888888888877777666666443222221100 0000111112223456666555567788889
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 286 KKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQS 365 (426)
Q Consensus 286 k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s 365 (426)
|||.+ +-.-+-|+-+...++=..+.......+..+. . ..+-.+.-+..+..++++..++-.+-+.-.-++++-
T Consensus 329 ~~ps~-Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~T--q----evItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAAv 401 (524)
T KOG4303|consen 329 KNPSQ-FNVMLKWSHIAAAVFKVVFGMLGFLTFGELT--Q----EVITNNLPNQSFKILVNLFLVVKALLSYPLPFYAAV 401 (524)
T ss_pred CChhH-heeeeehHHHHHHHHHHHHHHheeeeechhh--H----HHHhcCCCccchhhhhhHHHHHHHHHcCCchHHHHH
Confidence 99864 5555667777777666655555444333211 1 011122222233444444444444444444455555
Q ss_pred HHHH
Q 014358 366 RLYL 369 (426)
Q Consensus 366 R~l~ 369 (426)
.+|.
T Consensus 402 elLe 405 (524)
T KOG4303|consen 402 ELLE 405 (524)
T ss_pred HHHH
Confidence 5554
No 96
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=95.98 E-value=1.8 Score=42.60 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=18.4
Q ss_pred ccccChHHHHHHHhhhhhcchhhhc
Q 014358 58 LRRLGLFELVLIGVGASVGAGIFVV 82 (426)
Q Consensus 58 ~r~l~~~~~~~l~~~~~ig~gi~~~ 82 (426)
|.++|.++-+.+.++.-+|.|+..-
T Consensus 34 kPefS~~sW~aMlf~aG~G~gllfw 58 (453)
T TIGR00842 34 KPEFSTLSWLAMLFAAGMGIGLMFW 58 (453)
T ss_pred CCCCcchHHHHHHHHHhhhhhhhhh
Confidence 4567888888888888788776543
No 97
>PLN00150 potassium ion transporter family protein; Provisional
Probab=95.96 E-value=0.78 Score=47.66 Aligned_cols=211 Identities=13% Similarity=0.119 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccc---ccccCCCCCCC---------CchHHHHHHH
Q 014358 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE---VDVSNWSPFAP---------NGFKEILTGA 265 (426)
Q Consensus 198 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~---~~~~~~~~~~~---------~~~~~~~~~~ 265 (426)
..+++++++.++.+-.+|....++ .++.+.++-++.+...++.+ .++.-+..+.| ++.. -+..+
T Consensus 215 v~is~~ILv~LF~iQ~~GT~kVg~---~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~-g~~~L 290 (779)
T PLN00150 215 TIISCVILVILFSLQRFGTHKVSF---LFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNGRQ-GWESL 290 (779)
T ss_pred hhhHHHHHHHHHHHHhccchhhhh---hhccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHhCCCc-eEEEe
Confidence 456777777777888888655554 45555555555555555543 33333333333 2221 12244
Q ss_pred HHHHHHhhhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHH
Q 014358 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLI 345 (426)
Q Consensus 266 ~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (426)
..++.+.+|-|+.- ++--.-.+|.+.++-..-+.=+.++--+..-+....-| + ...+||... ..+++.+.+
T Consensus 291 G~V~L~iTGaEALy--ADlGHFg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p-~--~~~npFf~~----iP~~~~~P~ 361 (779)
T PLN00150 291 GGIVLCMTGTEAMF--ADLGHFTVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHM-E--DVNDPFYRS----LPKPIYWPI 361 (779)
T ss_pred cceeeeecchhhhh--ccccCCCccceeeeehhhHHHHHHHHHcchHHHHhcCc-c--cccCcHHHh----CCchhHHHH
Confidence 45567788988652 23333345666665553333333333333333332212 1 123355443 333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCch-hhhhhcCC--CC--CchHHHHHHHHHHHHHHhh-hCHHHHHHHHH
Q 014358 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPK--RH--TPVHSQVWVGIVAGILAGL-FNVRVLSHILS 419 (426)
Q Consensus 346 ~~~~~~s~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~~--~~--~P~~a~~~~~~~~~~~~~~-~~~~~~~~l~~ 419 (426)
.+...+++.-+..+...++=-+..+.-+-|.+|+ +..+.+++ .+ .|..-.++ .+.++++.+. .+.+.+.+.+.
T Consensus 362 ~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~L-mv~~i~vv~~F~~s~~l~~AYG 440 (779)
T PLN00150 362 FVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWIL-MVLCLVITAGFRDTDEIGNAYG 440 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHH-HHHHHhheEEecChHHHHHHhh
Confidence 4444444444444444444445555556789994 22333332 23 44443332 3233333333 37777777766
Q ss_pred HHH
Q 014358 420 VGT 422 (426)
Q Consensus 420 ~~~ 422 (426)
+++
T Consensus 441 iAV 443 (779)
T PLN00150 441 IAV 443 (779)
T ss_pred hhe
Confidence 654
No 98
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=95.92 E-value=2.1 Score=42.86 Aligned_cols=213 Identities=12% Similarity=0.076 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc--cccCCCCCC---------CCchHHHHHHHH
Q 014358 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV--DVSNWSPFA---------PNGFKEILTGAT 266 (426)
Q Consensus 198 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~--~~~~~~~~~---------~~~~~~~~~~~~ 266 (426)
..+++++++....+..+|....++. ++.++++-.+.+...++.+. +++-+..+. .++..+ +..+.
T Consensus 133 v~it~~ILv~LF~iQ~~GT~~ig~~---FgPim~~WF~~l~~~G~~~I~~~p~Vl~A~nP~yai~f~~~~~~~~-~~~LG 208 (534)
T PF02705_consen 133 VPITIAILVGLFAIQRFGTAKIGKL---FGPIMLLWFLTLGVLGLYNIIQHPEVLKALNPYYAIRFFIRNGWIG-FFVLG 208 (534)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHH---HhHHHHHHHHHHHHHHHHHHhhCHHHHHHhCHHHHHHHHHHcCCch-hhhcc
Confidence 4577777788888888886666555 56666666666666655532 122112122 233322 33555
Q ss_pred HHHHHhhhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHHH
Q 014358 267 VVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLIS 346 (426)
Q Consensus 267 ~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (426)
..+.+.+|-|+.-. +-=+-.+|.+.++-..-+.-+.++--+..-+....-| + ...+|+.... ..++.+.+.
T Consensus 209 ~V~L~~TGaEALyA--DmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p-~--~~~npFf~~~----P~~~~~p~~ 279 (534)
T PF02705_consen 209 AVFLCVTGAEALYA--DMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHP-E--AVSNPFFLLI----PEWLLWPMV 279 (534)
T ss_pred hHHHHHhhHHHHHh--hhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCc-c--hhhhHHHHHh----HHHHHHHHH
Confidence 67778899997643 3333345666666555233332222222323332222 1 1134555444 335444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCch-hhhhhcCCC--C--CchHHHHHHHHHHHHHHhhhCHHHHHHHHHHH
Q 014358 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPKR--H--TPVHSQVWVGIVAGILAGLFNVRVLSHILSVG 421 (426)
Q Consensus 347 ~~~~~s~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~~~--~--~P~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 421 (426)
+...+++.-+..+...++=-+..+.-+-|.+|| ...+.+++. + .|..-.++...+..++..+.+.+.+.+.+.++
T Consensus 280 ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYGiA 359 (534)
T PF02705_consen 280 ILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYGIA 359 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHHHH
Confidence 444444444444555555555566667899994 223333322 3 45544333333333333334788887777776
Q ss_pred HH
Q 014358 422 TL 423 (426)
Q Consensus 422 ~l 423 (426)
+.
T Consensus 360 Vt 361 (534)
T PF02705_consen 360 VT 361 (534)
T ss_pred HH
Confidence 54
No 99
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=95.69 E-value=2.6 Score=42.14 Aligned_cols=25 Identities=4% Similarity=0.102 Sum_probs=20.5
Q ss_pred ccccChHHHHHHHhhhhhcchhhhc
Q 014358 58 LRRLGLFELVLIGVGASVGAGIFVV 82 (426)
Q Consensus 58 ~r~l~~~~~~~l~~~~~ig~gi~~~ 82 (426)
|.+++.++-+.+.++.-+|.|+..-
T Consensus 83 kPefs~~sW~aMlf~aG~G~gllfw 107 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAVLFW 107 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhhhhh
Confidence 6789999999999998888887553
No 100
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=95.63 E-value=2.3 Score=41.20 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=31.4
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014358 330 SDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (426)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ 371 (426)
.+.++...+++...++.+..+.+..++.....++..-+....
T Consensus 283 ~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gf 324 (390)
T TIGR01197 283 GVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGF 324 (390)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344455667788888888888888888888888776666654
No 101
>PLN00149 potassium transporter; Provisional
Probab=95.41 E-value=4.2 Score=42.58 Aligned_cols=214 Identities=10% Similarity=0.017 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccc---ccccCCCCCCCCchHHH--------HHHHHH
Q 014358 199 ILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE---VDVSNWSPFAPNGFKEI--------LTGATV 267 (426)
Q Consensus 199 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~ 267 (426)
.+++++++.++.+-.+|....+ ..++.+.++-++.+...++.+ .++.-+..+.|.-...| +..+..
T Consensus 200 ~is~~ILv~LF~~Q~~GT~kvg---~~FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~~~~~~g~~~LGg 276 (779)
T PLN00149 200 PVACIILIGLFALQHYGTHRVG---FLFAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLKKTQRGGWMSLGG 276 (779)
T ss_pred HHHHHHHHHHHHHhccccHHHh---hhhhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHHHCCCceeEeecc
Confidence 4777777778888888865555 445555555555555555543 33443443333211111 224455
Q ss_pred HHHHhhhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHHHH
Q 014358 268 VFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISF 347 (426)
Q Consensus 268 ~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (426)
++.+.+|-|+.- ++--.-.+|.+.++-..-+.=+.++--+..-+....-|...-.-.+||... ..+++.+-+.+
T Consensus 277 V~L~iTG~EALy--ADlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~~----iP~~~~~P~~v 350 (779)
T PLN00149 277 ILLCITGSEAMF--ADLGHFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYVS----VPEKLRWPVLV 350 (779)
T ss_pred hhhcccchhhhh--hcccCCCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHHh----CCchhHHHHHH
Confidence 667888999653 233333456666665543333333333333333332222111112355443 33344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcCCCch-hhhhhcCC--CC--CchHHHHHHHHHHHHHHhh-hCHHHHHHHHHHH
Q 014358 348 GAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPK--RH--TPVHSQVWVGIVAGILAGL-FNVRVLSHILSVG 421 (426)
Q Consensus 348 ~~~~s~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~~--~~--~P~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~ 421 (426)
...++..-+..+...++=-+..+.-+-|.+|+ +..+.+++ .+ .|..-.++. +.++.+.+. .+.+.+.+.+.++
T Consensus 351 lAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lm-v~~i~vv~~F~~s~~l~~AYGiA 429 (779)
T PLN00149 351 IAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLM-LLCLAVTVGFRDTKRLGNASGLA 429 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHH-HHHHhheeEecChHHHHHHhhhh
Confidence 44444444444444444445555556789994 22233322 13 444433332 233233323 3777777666665
Q ss_pred H
Q 014358 422 T 422 (426)
Q Consensus 422 ~ 422 (426)
+
T Consensus 430 V 430 (779)
T PLN00149 430 V 430 (779)
T ss_pred h
Confidence 4
No 102
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=94.20 E-value=5.2 Score=37.90 Aligned_cols=217 Identities=12% Similarity=0.117 Sum_probs=125.6
Q ss_pred chhhHHHHH-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHH
Q 014358 125 GAYLYAYTA-FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPI 203 (426)
Q Consensus 125 g~y~~~~~~-~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (426)
-.-++.+.. -++..-++.+....+.......++-...+..+....+. ++.. .+.. .
T Consensus 107 tI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gi---------dY~t-------------gL~i-f 163 (473)
T COG4145 107 TINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGI---------DYTT-------------GLLI-F 163 (473)
T ss_pred eHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCC---------Cchh-------------hHHH-H
Confidence 344455544 45778899999999999999999999999988886652 1100 1111 1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-------------cccCCCCCCCCc--hHHHHH-HHHH
Q 014358 204 LLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-------------DVSNWSPFAPNG--FKEILT-GATV 267 (426)
Q Consensus 204 ~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-------------~~~~~~~~~~~~--~~~~~~-~~~~ 267 (426)
-..+..+...-|.|.....-.+-+.++++.-+++.+..+... |++-..|...+. -..++. ....
T Consensus 164 a~~V~iYt~fGGFRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwil 243 (473)
T COG4145 164 AVSVAIYTAFGGFRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWIL 243 (473)
T ss_pred HHHHHHHHhhcceeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHH
Confidence 122233345567777777766667777666666655544322 222222221121 112222 2233
Q ss_pred HHHHhhhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHh---cccccccCCCChHHHHHHHcChhHHHHH
Q 014358 268 VFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTG---MVPYKFLDEDAPLSDAFASRGLKYVSVL 344 (426)
Q Consensus 268 ~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (426)
..+...|......-.--.|| +|.+.+++.++..++.++.+.+-.+-.. +.|+-.. .|.-+...+-+...+....+
T Consensus 244 v~~gvlglP~t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~-~D~Vip~lalkvlpp~~agi 321 (473)
T COG4145 244 VCFGVLGLPHTAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTV-VDLVIPTLALKVLPPFAAGI 321 (473)
T ss_pred HHHHHhcCcHHHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCc-cchhHHHHHHHhcchHHHHH
Confidence 45555565555555566788 5789999999988888877766555432 2332222 23334444455555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014358 345 ISFGAVAGLTTTLLVGLYVQSR 366 (426)
Q Consensus 345 ~~~~~~~s~~~~~~~~~~~~sR 366 (426)
+....+.+..++.++...-.|-
T Consensus 322 fl~apmaAiMSTIds~L~~~ss 343 (473)
T COG4145 322 FLAAPMAAIMSTINSQLLQSSS 343 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777666654443
No 103
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=94.16 E-value=7.4 Score=39.54 Aligned_cols=101 Identities=13% Similarity=0.174 Sum_probs=57.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccc---------ccCCCCCCCCchHHHHHHHHHHHHHhh-hHHH
Q 014358 208 LTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD---------VSNWSPFAPNGFKEILTGATVVFFAYV-GFDA 277 (426)
Q Consensus 208 ~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~e~ 277 (426)
+......|+|..+|+......+-.+.++++.+.++...+ ..+|..+. +..-|..++..++|+.. |+-.
T Consensus 191 v~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~--~~~vW~~A~~Q~ffsl~ig~G~ 268 (523)
T PF00209_consen 191 VFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLL--DPKVWIAALGQVFFSLSIGFGI 268 (523)
T ss_dssp HTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTT--SHHHHHHHHHHHHHHTTTTSSH
T ss_pred HHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhh--HHHHHHHHHHHHhhccCCCcce
Confidence 334456788888888777665444444444443332110 11333332 23456778888888884 7888
Q ss_pred HhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHH
Q 014358 278 VANSAEESKKPQRDLPIGILGSLLICAALYVGVS 311 (426)
Q Consensus 278 ~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~ 311 (426)
...++.-.|+ ++|++|.............++..
T Consensus 269 ~it~~Sy~~~-~~n~~~~a~~v~~~~~~~sllag 301 (523)
T PF00209_consen 269 MITYGSYNKF-KNNIFRDALIVAFINTLVSLLAG 301 (523)
T ss_dssp HHHHHTTS-T-TS-SHHHHHHHHHHHHHHHHTTG
T ss_pred EEEEcCcCCC-CccccccceEEEcCchhhhHhHH
Confidence 8888888887 57788876666666655554433
No 104
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=93.48 E-value=2.3 Score=43.73 Aligned_cols=179 Identities=16% Similarity=0.096 Sum_probs=92.7
Q ss_pred ChHHHHHHHhhhhhcchhhhchH-HhhhhcCchHHHHHHHHHH-HHHHHHHHHHHHHhhCCCCCCchhhHHHHH-hchhH
Q 014358 62 GLFELVLIGVGASVGAGIFVVTG-TVARDAGPGVTISFLLAGA-ASVLNALCYAELASRFPAVVGGAYLYAYTA-FNELT 138 (426)
Q Consensus 62 ~~~~~~~l~~~~~ig~gi~~~~~-~~~~~~G~~~~~~~il~~~-~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~-~g~~~ 138 (426)
+..+..+-++|..+|.|=+.+.. ..++++|.+.++.+++..+ +.+|..+.-.-++.-... |+.-.|=+-. .-+-+
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~--g~v~~wrri~Pif~Gv 116 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQ--GPVSVWRRICPIFKGV 116 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcC--ChHHHHHHhChHhcCc
Confidence 77888888999999999888555 6667777776666666544 456666555555555444 5555554321 11234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCc------------------------------
Q 014358 139 AFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGE------------------------------ 188 (426)
Q Consensus 139 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 188 (426)
|+...+..++-..-+....+....-++++.-+-+|+.. -..+|..++-.
T Consensus 117 G~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf~~~lpW~~-C~~~wnt~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (629)
T KOG3660|consen 117 GWASVVISALLAIYYIVILAWALYYLFSSFTSDLPWST-CNNPWNTEYCLDGTSKQNCANLTKLSNALNFNSPVAEFWEN 195 (629)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChhh-cCChhcCCccccccccccccccccccchhhhccchhhhhhh
Confidence 44433333222222222222222222222111233321 11112111111
Q ss_pred -----------cccccchhhHHHHHHHH-HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 014358 189 -----------EFLGGTLSINILAPILL-ALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF 243 (426)
Q Consensus 189 -----------~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~ 243 (426)
+......++...+..+. +++.++..+|+|..+|+..+...+-.+.++++.+-++.
T Consensus 196 ~~~~~~~~~~~~~~g~~~w~L~~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgvT 262 (629)
T KOG3660|consen 196 RVLSLSDGSGIEDFGSINWPLALCLALAWLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGVT 262 (629)
T ss_pred hhcccccccccccCCCCChHHHHHHHHHHHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHcc
Confidence 01222223334444333 44455567899999999888887777766666665554
No 105
>PLN00148 potassium transporter; Provisional
Probab=92.04 E-value=7.8 Score=40.61 Aligned_cols=212 Identities=9% Similarity=0.068 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccc---ccccCCCCCCC---------CchHHHHHHH
Q 014358 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE---VDVSNWSPFAP---------NGFKEILTGA 265 (426)
Q Consensus 198 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~---~~~~~~~~~~~---------~~~~~~~~~~ 265 (426)
..+++++++.++.+-.+|....++ .++.+.++-++.+...++.+ .++.-+..+.| ++..+ +..+
T Consensus 198 v~is~~ILv~LF~vQ~~GT~kVg~---~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g-~~~L 273 (785)
T PLN00148 198 VLLACVILVGLFALQHCGTHRVAF---MFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFFRVTGKDG-WISL 273 (785)
T ss_pred hhHHHHHHHHHHHHhccccHHHHh---hhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHHHhCCCce-EEee
Confidence 456777777777788888655554 44555555555555555443 33433333333 22211 2244
Q ss_pred HHHHHHhhhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHH
Q 014358 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLI 345 (426)
Q Consensus 266 ~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (426)
..++.+.+|-|+.- ++--.-.+|.+.++-..-+.=+.++--+..-+....-| ++ ..+||... ..+++.+-+
T Consensus 274 GgV~L~iTGaEALy--ADlGHFg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p-~~--~~npFf~~----iP~~~~~P~ 344 (785)
T PLN00148 274 GGILLSITGTEAMF--ADLGHFTAASIRLAFATVIYPCLVVQYMGQAAFLSKNI-PS--IPNSFYDS----IPDPVFWPV 344 (785)
T ss_pred cchheeccchhhhh--hhccCCCccceEEeeeehHHHHHHHHHcchHHHHhcCc-cc--ccCcHHHh----CCchhHHHH
Confidence 55667788999653 22233345666655543333333333333333332222 11 23455443 233444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCch-hhhhhcCC--CC--CchHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Q 014358 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPK--RH--TPVHSQVWVGIVAGILAGLFNVRVLSHILSV 420 (426)
Q Consensus 346 ~~~~~~s~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~~--~~--~P~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 420 (426)
.+...++..-+..+...++=-+..+.-+-|.+|+ +..+.+++ .+ .|..-.++...+.++...+.+.+.+.+.+.+
T Consensus 345 ~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~AYGi 424 (785)
T PLN00148 345 FVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIGNAYGL 424 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHHHhhhh
Confidence 4444444444344444444444555556789994 23333333 12 4544333333222223333366666666665
Q ss_pred HH
Q 014358 421 GT 422 (426)
Q Consensus 421 ~~ 422 (426)
++
T Consensus 425 AV 426 (785)
T PLN00148 425 AC 426 (785)
T ss_pred he
Confidence 54
No 106
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=91.45 E-value=18 Score=36.96 Aligned_cols=212 Identities=13% Similarity=0.078 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc--cccCCCCCCC---------CchHHHHHHHH
Q 014358 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV--DVSNWSPFAP---------NGFKEILTGAT 266 (426)
Q Consensus 198 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~--~~~~~~~~~~---------~~~~~~~~~~~ 266 (426)
..+++++++..+.+..+|....+ ..++.++++-.+.+.+.++.+. +++-+..+.| ++..+ +..+.
T Consensus 144 vpit~~ILv~LF~iQ~~GT~~vG---~~FgPIm~vWF~~i~~~Gi~~I~~~P~Vl~AlnP~ya~~f~~~~~~~g-f~~LG 219 (622)
T PRK10745 144 VPLSIIVLTLLFMIQKHGTGMVG---KLFAPIMLTWFLTLAVLGLRSIIANPEVLHALNPMWAVHFFLEYKTVS-FFALG 219 (622)
T ss_pred HHHHHHHHHHHHHHhccccHHHh---hhhhhHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHhCCCce-EEEec
Confidence 45777777777778877855555 4556666666666655555432 2222222222 12211 12344
Q ss_pred HHHHHhhhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHHH
Q 014358 267 VVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLIS 346 (426)
Q Consensus 267 ~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (426)
..+.+.+|-|+. +++--+-.||.+.++-..-+.=+.++--+..-+....-| + ...+|+... ..+++.+.+.
T Consensus 220 ~V~L~vTGaEAL--YADmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p-~--~~~NpFf~~----~P~~~~~p~v 290 (622)
T PRK10745 220 AVVLAITGVEAL--YADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNP-E--AIKNPFFLL----APDWALIPLL 290 (622)
T ss_pred ceeeeccchHHH--hhccCCCCccceeeeehhhHHHHHHHHhcchHHHHhcCc-h--hhcCcHHHh----CChhHHHHHH
Confidence 456677898865 233333445666665544333233332223333332111 1 123465554 2344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCch-hhhhhcCC--CC--CchHHHHHHHHHHHHHHhhhCHHHHHHHHHHH
Q 014358 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPK--RH--TPVHSQVWVGIVAGILAGLFNVRVLSHILSVG 421 (426)
Q Consensus 347 ~~~~~s~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~~--~~--~P~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 421 (426)
+...+++.-+..+...++=-+..+.-+-|.+|| ...+.+++ .+ .|..--++...+..++..+.+.+.+.+.|.++
T Consensus 291 iLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYGiA 370 (622)
T PRK10745 291 ILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYGIA 370 (622)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhhhh
Confidence 444444444444444444445555567799993 22233322 23 34433222222222222223777777666665
Q ss_pred H
Q 014358 422 T 422 (426)
Q Consensus 422 ~ 422 (426)
+
T Consensus 371 V 371 (622)
T PRK10745 371 V 371 (622)
T ss_pred h
Confidence 4
No 107
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=90.92 E-value=19 Score=37.49 Aligned_cols=213 Identities=12% Similarity=0.096 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc---cccCCCCCCC---------CchHHHHHHH
Q 014358 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV---DVSNWSPFAP---------NGFKEILTGA 265 (426)
Q Consensus 198 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~---~~~~~~~~~~---------~~~~~~~~~~ 265 (426)
..+++++++..+.+-.+|....++ .++.++++-++.+.+.++.+. ++.-+..+.| ++..+ +..+
T Consensus 169 v~it~~ILv~LF~iQ~~GT~kvg~---~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~~~~~-~~~L 244 (688)
T TIGR00794 169 VPISCIILVLLFLIQRFGTAKVGF---TFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEYGTVG-WVSL 244 (688)
T ss_pred hhHHHHHHHHHHHHhccccHHHhh---hhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHCCCce-eeec
Confidence 456777777777788888655554 455555555555555555432 3333333322 22211 2244
Q ss_pred HHHHHHhhhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHH
Q 014358 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLI 345 (426)
Q Consensus 266 ~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (426)
...+.+.+|-|+.- ++--+-.+|.+.++-..-+.-+.++--+..-+....-| +. ..+||... ..++..+.+
T Consensus 245 G~V~L~iTGaEALy--ADmGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p-~~--~~NpFf~~----~P~~~~~p~ 315 (688)
T TIGR00794 245 GGVVLSITGVEAMF--ADLGHFGKLPIQLAWFTFVYPSLILCYIGQAAYLSKHP-EA--IKNPFFLS----IPDWALWPL 315 (688)
T ss_pred cchhheeccHhhhh--cccCCCCcccceeehHHHHHHHHHHHHcchHHHHhcCc-ch--hcCcHHHh----CchHHHHHH
Confidence 55677888999652 23233345666655543333333333233333332212 11 13455544 334555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCch-hhhhhcCC--CC--CchHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Q 014358 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPS-IFAKVHPK--RH--TPVHSQVWVGIVAGILAGLFNVRVLSHILSV 420 (426)
Q Consensus 346 ~~~~~~s~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~~~--~~--~P~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 420 (426)
.+...+++.-+..+...++=-+..+.-+-|.+|+ ...+.+++ .+ .|..--++...+..++..+.+.+.+.+.|.+
T Consensus 316 ~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AYGi 395 (688)
T TIGR00794 316 FIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAYGI 395 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHhhh
Confidence 5544444444444444444455555567799993 23333332 23 4444333322222222333377777777766
Q ss_pred HHH
Q 014358 421 GTL 423 (426)
Q Consensus 421 ~~l 423 (426)
++.
T Consensus 396 aVt 398 (688)
T TIGR00794 396 AVT 398 (688)
T ss_pred hhh
Confidence 643
No 108
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=89.61 E-value=19 Score=34.26 Aligned_cols=102 Identities=15% Similarity=0.013 Sum_probs=64.5
Q ss_pred cChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhchhHHH
Q 014358 61 LGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAF 140 (426)
Q Consensus 61 l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~ 140 (426)
.+.+-++..=+.++.|.|-...|..... -|+.--+.|++-+.+..-...=+..+-....++.-+.-+.+++..||..+.
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~-~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~ 130 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAAQ-FGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKK 130 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHHH-hcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHH
Confidence 3445666777778889998888887744 677523333333333333344444444444442457888888999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014358 141 LVFAQLMLDYHIGAASIARSLAS 163 (426)
Q Consensus 141 ~~g~~~~~~~~~~~~~~~~~~~~ 163 (426)
+..+..++..+...+......++
T Consensus 131 lf~~f~~~~lilV~avF~~v~a~ 153 (376)
T PF02554_consen 131 LFLIFIFFLLILVIAVFADVVAN 153 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777666665555444443
No 109
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=88.62 E-value=10 Score=38.46 Aligned_cols=223 Identities=13% Similarity=0.043 Sum_probs=112.8
Q ss_pred CchhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHH
Q 014358 124 GGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPI 203 (426)
Q Consensus 124 Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (426)
...|+|.+..|++.........+.+..+...+...+.-+..++...+. ..+ ......
T Consensus 108 ~~~~eYl~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~--------~~~---------------l~~~~~ 164 (585)
T KOG2349|consen 108 TTMYEYLEKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGI--------NLY---------------LIVVIL 164 (585)
T ss_pred eehhHHHHHHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhcc--------Cce---------------eehHHH
Confidence 578999999999987667676677666666666666666666653321 000 112223
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc----------------cc---cCCCCCCCCchHHHHHH
Q 014358 204 LLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV----------------DV---SNWSPFAPNGFKEILTG 264 (426)
Q Consensus 204 ~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~----------------~~---~~~~~~~~~~~~~~~~~ 264 (426)
....+.....-|.|.+-+.-.+-+.+++...+.+++.+.... .. -+++|...+.++.++.+
T Consensus 165 ~~ic~~YT~~GGlkaVi~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~G 244 (585)
T KOG2349|consen 165 GLICVFYTALGGLKAVIWTDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFG 244 (585)
T ss_pred HHHHHHHHHhcCeeEEEEhhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcC
Confidence 333334445567777777776667777777777766655421 01 12223323334456666
Q ss_pred HHHHHHHhhhHHHHhhhhhhhC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHhcc----cccccC-----C-CChHHHHH
Q 014358 265 ATVVFFAYVGFDAVANSAEESK-KPQRDLPIGILGSLLICAALYVGVSLVLTGMV----PYKFLD-----E-DAPLSDAF 333 (426)
Q Consensus 265 ~~~~~~~~~G~e~~~~~~~E~k-~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~----~~~~~~-----~-~~~~~~~~ 333 (426)
.......+.|.+.... ..-+. +..|+..+++........+...+....-.... +.+.+. . |+-.....
T Consensus 245 g~~~~l~~~~vnQ~~V-QR~lsl~slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D~~~P~fV 323 (585)
T KOG2349|consen 245 GTIMWLSYYGVNQLIV-QRYLSLPSLKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPDQLLPLFV 323 (585)
T ss_pred CcHHHHHHHhhhHHHH-hHHhccccHHHhhhhhhhhhhHHHHHHHhhcccceeEeeecccCCcccccccCCccccccHHH
Confidence 6666666667664432 11111 22455666665555554444443332221111 112211 1 21111112
Q ss_pred HHcCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 334 ASRGL--KYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (426)
Q Consensus 334 ~~~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~ 370 (426)
....+ +...-++.-++..+.+++..+.+++.|-+.+.
T Consensus 324 ~d~~~~~pGl~GLfia~vfsA~LSsLSS~~NS~s~v~~e 362 (585)
T KOG2349|consen 324 MDLMGHLPGLRGLFIAVVFSAALSSLSSIFNSLSTVFLE 362 (585)
T ss_pred HHhcCCCCCccchhHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 22222 22333444455556666666667777766654
No 110
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=81.54 E-value=65 Score=32.80 Aligned_cols=119 Identities=17% Similarity=0.183 Sum_probs=62.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccc--ccccCCCCCCCC-----chHHHHHHHHH
Q 014358 195 LSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE--VDVSNWSPFAPN-----GFKEILTGATV 267 (426)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~ 267 (426)
....+..+++.+++.+....|.|..+|+.-+...+-.+.+.++.+.++-. .+........|+ ....|..+...
T Consensus 252 ~~~~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtq 331 (629)
T KOG3659|consen 252 WTLALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQ 331 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHH
Confidence 34456666777777788888999999985555444332222222323211 111111111111 23456666677
Q ss_pred HHHHh-hhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 014358 268 VFFAY-VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVL 314 (426)
Q Consensus 268 ~~~~~-~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~ 314 (426)
++++. .|+......+.-.|- +.|.-|--+..-.+..+.+++..+..
T Consensus 332 iffslg~GfG~L~AfaSyn~F-~NNc~rDAll~S~in~~ts~~sgfvi 378 (629)
T KOG3659|consen 332 IFFSLGPGFGVLIAFASYNKF-HNNCYRDALLTSIINCLTSFLSGFVI 378 (629)
T ss_pred HHhhcCccchhhhhhhhhccc-ccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 77765 477777666665553 34444444444455555555544443
No 111
>COG4146 Predicted symporter [General function prediction only]
Probab=76.97 E-value=71 Score=30.57 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=39.0
Q ss_pred chhhHHHHHhchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccccc
Q 014358 125 GAYLYAYTAFNELTAFLVFAQLMLDYHI-GAASIARSLASYVVSILELFPF 174 (426)
Q Consensus 125 g~y~~~~~~~g~~~g~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 174 (426)
-.-++.++.|++....++..++.++|.. ..+...+..+-.+++++++-..
T Consensus 104 TIPdFlE~RfD~~TR~Iis~lFLi~y~~~flPtvLYsGAla~nsiF~l~~v 154 (571)
T COG4146 104 TIPDFLEERFDKTTRMIISFLFLIAYGVCFLPTVLYSGALALNSIFHLGEV 154 (571)
T ss_pred cchHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHhhhhchHhh
Confidence 4567899999999999999999988854 4667778888888887764333
No 112
>PTZ00206 amino acid transporter; Provisional
Probab=75.12 E-value=44 Score=33.44 Aligned_cols=55 Identities=4% Similarity=-0.132 Sum_probs=43.6
Q ss_pred hHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCchhhh
Q 014358 328 PLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFA 382 (426)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~ 382 (426)
.+.++.+...++++..+..+..++..++++.+++...+..+..+-++...|+++.
T Consensus 122 sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~ 176 (467)
T PTZ00206 122 TYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK 176 (467)
T ss_pred CHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 5667777777788899999999999999999999999998887665544455554
No 113
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=64.95 E-value=1.6e+02 Score=29.78 Aligned_cols=100 Identities=14% Similarity=0.024 Sum_probs=60.3
Q ss_pred hHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCCchhhHHHHHhchhHHHH
Q 014358 63 LFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAAS-VLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFL 141 (426)
Q Consensus 63 ~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~-~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~ 141 (426)
.+-.+..=+.++.|.|-.+.|-...+.+=+.+.+-.+++.+++ ...=+...-++.|. + .-+.-+.+++.+|+..+.+
T Consensus 54 k~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~-~-G~Si~~ia~~~lG~~a~~~ 131 (575)
T COG1966 54 KWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRH-G-GKSIGEIAGKYLGRTAKVF 131 (575)
T ss_pred chhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeecc-C-CccHHHHHHHHhhhhHHHH
Confidence 3445566667888999999988877765344333333344433 33333333333333 3 3567788888899888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014358 142 VFAQLMLDYHIGAASIARSLASY 164 (426)
Q Consensus 142 ~g~~~~~~~~~~~~~~~~~~~~~ 164 (426)
.....++-.+...+..+...+..
T Consensus 132 ~~~~~l~iliiv~Avfa~vv~~~ 154 (575)
T COG1966 132 FLLLALILLILVGAVFAAVIAKL 154 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766665555555555555443
No 114
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=62.09 E-value=11 Score=32.41 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=26.6
Q ss_pred hhhhCCCC-CChhHHHHHHHHHHHHHHHHHHHHH
Q 014358 282 AEESKKPQ-RDLPIGILGSLLICAALYVGVSLVL 314 (426)
Q Consensus 282 ~~E~k~p~-k~~p~ai~~~~~~~~v~y~~~~~~~ 314 (426)
-|-.+||| |+.||+++.+.+.+.++-++.....
T Consensus 204 IEGfHDPKFKr~p~~vias~vaS~~~gii~v~~~ 237 (240)
T PRK00968 204 IEGFHDPKFKRWPRAVIASFVASLVCGIVAVLMI 237 (240)
T ss_pred eecCCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 45667998 8999999999999988887665543
No 115
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=55.73 E-value=2.2e+02 Score=28.22 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=64.1
Q ss_pred hHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHH
Q 014358 128 LYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLAL 207 (426)
Q Consensus 128 ~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (426)
..+.+.+|+....+.+...+++...........+++++...+. ..+ ..+..++.++
T Consensus 269 ~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~---------isY---------------~~~v~i~~l~ 324 (439)
T PRK15433 269 AYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP---------LSY---------------RTLVFILGGF 324 (439)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------CcH---------------HHHHHHHHHH
Confidence 4566789999999999999999999999999999999988422 111 4466677777
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 014358 208 LTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF 243 (426)
Q Consensus 208 ~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~ 243 (426)
...+...|.+..-++..-...+.--..+++++..+.
T Consensus 325 S~~lSn~G~~~II~~s~PiL~~iYP~~IvLill~l~ 360 (439)
T PRK15433 325 SMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFT 360 (439)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 777788887766666655544433333344444443
No 116
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=53.40 E-value=2.6e+02 Score=28.48 Aligned_cols=95 Identities=17% Similarity=0.250 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc--cccCCCCCCCCchHHHHH--------HHHH
Q 014358 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV--DVSNWSPFAPNGFKEILT--------GATV 267 (426)
Q Consensus 198 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~ 267 (426)
..+..++++..+.+...|....+| +++.++++-.+.+...++.+. +++-....+|.-...|+. .+..
T Consensus 149 vpitl~IL~~LF~iQ~~GT~~Vg~---~FGPVm~lWF~~l~~~Gl~~i~~~p~IL~AiNP~yAi~fl~~~~~~gf~vLGa 225 (627)
T COG3158 149 VPITLIILVLLFLIQRFGTGRVGK---LFGPVMLLWFLALAVLGLINIIDDPEILRAINPYYAVHFLLEEGFVGFFVLGA 225 (627)
T ss_pred HHHHHHHHHHHHHHhcccchhhhh---hhccHHHHHHHHHHHHHHHHHhcCHHHHHHhChHHHHHHHHhCCceEEEEeee
Confidence 456777777777888888655555 456666666666666666542 333333332321111111 2233
Q ss_pred HHHHhhhHHHHhhhhhhhCCCCCChhHHHH
Q 014358 268 VFFAYVGFDAVANSAEESKKPQRDLPIGIL 297 (426)
Q Consensus 268 ~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~ 297 (426)
.+.+.+|-|+.-. +-=+-.+|.+.+|-.
T Consensus 226 VfLavTGaEALYA--DmGHfGr~pI~~AWf 253 (627)
T COG3158 226 VFLAVTGAEALYA--DMGHFGRKPIRVAWF 253 (627)
T ss_pred eeeeeccHHHHHh--hccccCCccHHHHHH
Confidence 4556788886532 222334566655543
No 117
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=47.74 E-value=26 Score=29.16 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=25.7
Q ss_pred hhhhCCCC-CChhHHHHHHHHHHHHHHHHHHHHH
Q 014358 282 AEESKKPQ-RDLPIGILGSLLICAALYVGVSLVL 314 (426)
Q Consensus 282 ~~E~k~p~-k~~p~ai~~~~~~~~v~y~~~~~~~ 314 (426)
-|-.+||| |+.||+.+.+++...+.-++..+..
T Consensus 194 IEGfHDPKfkk~pk~vias~vasil~~iia~l~v 227 (230)
T COG4060 194 IEGFHDPKFKKLPKAVIASLVASILAGIIAVLLV 227 (230)
T ss_pred eecccChhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 35668998 8899999999988887776655443
No 118
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=43.10 E-value=1e+02 Score=23.49 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=19.1
Q ss_pred CCCcccccChHHHHHHHhhhhhcchhhhch
Q 014358 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVT 83 (426)
Q Consensus 54 ~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~ 83 (426)
+++.-|.++....+.+.+...+-.|++...
T Consensus 35 ~~~~~~~l~~~g~IG~~~v~pil~G~~lG~ 64 (100)
T TIGR02230 35 TRSIWEGLGMFGLIGWSVAIPTLLGVAVGI 64 (100)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777777777665555655543
No 119
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=40.62 E-value=1.3e+02 Score=21.43 Aligned_cols=42 Identities=19% Similarity=0.098 Sum_probs=34.0
Q ss_pred HHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhc
Q 014358 276 DAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGM 317 (426)
Q Consensus 276 e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~ 317 (426)
|.-..+-.|++.|=|.+.+-+..++..+..+..++...=...
T Consensus 4 ~~~~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl~a 45 (75)
T PF11998_consen 4 EQYARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLFRLIA 45 (75)
T ss_pred HHHHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344567789999999999999999999999888777665543
No 120
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=38.05 E-value=4.1e+02 Score=26.26 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=64.1
Q ss_pred hhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHH
Q 014358 127 YLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLA 206 (426)
Q Consensus 127 y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (426)
-+.+++.+|+.-..+.+....++............++|+...+. ..+ + ..+..++.+
T Consensus 264 ~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~-------kis-Y---------------~~~v~i~~i 320 (427)
T PF05525_consen 264 SQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP-------KIS-Y---------------KVWVIIFTI 320 (427)
T ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccC-h---------------HHHHHHHHH
Confidence 34556689999999999999999999988999999999999433 111 1 445666667
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 014358 207 LLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF 243 (426)
Q Consensus 207 ~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~ 243 (426)
+...+...|.+..-++......+.--..+++++..+.
T Consensus 321 ~S~~ian~Gl~~Ii~~s~PiL~~iYP~~IvLIll~l~ 357 (427)
T PF05525_consen 321 FSFIIANLGLDQIIKISVPILMFIYPVAIVLILLNLF 357 (427)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 7777888887766666554444333333344444443
No 121
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=34.58 E-value=18 Score=28.05 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=25.8
Q ss_pred CCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHH
Q 014358 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLN 108 (426)
Q Consensus 55 ~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~ 108 (426)
+...|+..+..+.+.--.-.+|.|.|...+.+-+ ++.. ...-++++.++.++.
T Consensus 45 r~P~k~i~lavvL~~fg~Lli~lg~fl~~~~~~a-g~~~~gv~f~V~G~L~FiPG 98 (124)
T KOG4753|consen 45 RHPVKEIALAVVLLVFGLLLIGLGFFLAGGRVEA-GDRSQGVFFFVLGILLFIPG 98 (124)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHheecceee-CCCcceEEEehhhhHhcccc
Confidence 3444555555544433334477776665554333 2222 444455555554443
No 122
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=34.33 E-value=1.2e+02 Score=20.34 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHH
Q 014358 263 TGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYV 308 (426)
Q Consensus 263 ~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~ 308 (426)
..+-..+|++.|...-.+.-+|.++.+ |...+.+-++.+++++
T Consensus 3 ~~~~sVl~af~GVqs~~~~e~Df~~~~---p~~~Ii~gii~~~~fV 45 (56)
T PF11174_consen 3 QVVKSVLWAFFGVQSSKNRERDFAQGS---PVHFIIVGIILAALFV 45 (56)
T ss_pred HHHHHHHHHHhCcCcchhHHHHHHcCC---CchHHHHHHHHHHHHH
Confidence 455677899999998888888887532 3444444333333333
No 123
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=33.90 E-value=5.1e+02 Score=26.16 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=35.2
Q ss_pred HHHHHHHhhhHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHh--cccccccC
Q 014358 265 ATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTG--MVPYKFLD 324 (426)
Q Consensus 265 ~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~--~~~~~~~~ 324 (426)
+....|...|.- -...++..|+ .|++++.+..++-...-+..+..++..+ .+++.++.
T Consensus 302 iI~l~F~i~Giv-YG~~sG~iks-~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg 361 (502)
T PF03806_consen 302 IIFLFFLIPGIV-YGIASGTIKS-DKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLG 361 (502)
T ss_pred HHHHHHHHHHHH-HhhhhceecC-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchH
Confidence 333444444443 2456788888 4789999998887666655555555443 34555543
No 124
>PF01080 Presenilin: Presenilin Alzheimer disease; InterPro: IPR001108 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22A, the type example being presenilin 1 from Homo sapiens (Human). Presenilins are polytopic transmembrane (TM) proteins, mutations in which are associated with the occurrence of early-onset familial Alzheimer's disease, a rare form of the disease that results from a single-gene mutation [, ]. The physiological functions of presenilins are unknown, but they may be related to developmental signalling, apoptotic signal transduction, or processing of selected proteins, such as the beta-amyloid precursor protein(beta-APP). There are a number of subtypes which belong to this presenilin family. That presenilin homologues have been identified in species that do not have an Alzhemier's disease correlate suggests that they may have functions unrelated to the disease, homologues having been identified in mouse, Drosophila melanogaster, Caenorhabditis elegans [] and other members of the eukarya including plants. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 2KR6_A.
Probab=31.00 E-value=1.2e+02 Score=29.55 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=6.0
Q ss_pred ccChHHHHHHH
Q 014358 60 RLGLFELVLIG 70 (426)
Q Consensus 60 ~l~~~~~~~l~ 70 (426)
|||+-|.++.+
T Consensus 327 klGlGDFiFYs 337 (403)
T PF01080_consen 327 KLGLGDFIFYS 337 (403)
T ss_dssp SS-TTTHHHHH
T ss_pred eecchhHHHHH
Confidence 66666666554
No 125
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=30.69 E-value=2.3e+02 Score=24.47 Aligned_cols=58 Identities=14% Similarity=0.015 Sum_probs=30.0
Q ss_pred ChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 014358 62 GLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPA 121 (426)
Q Consensus 62 ~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~ 121 (426)
..+.+..+.+++ |.-=....-.......+.-+...++...+........+..-.+.|.
T Consensus 97 ~i~~Va~iTiAn--GgDNigIYiP~Fa~~s~~~l~v~l~vF~ilv~v~c~la~~l~~~p~ 154 (191)
T PF03596_consen 97 LILTVAAITIAN--GGDNIGIYIPLFASLSLAELIVILIVFLILVGVWCFLAYKLARIPI 154 (191)
T ss_pred hhHHhhhhhhhc--CCCeEEEeehhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCChH
Confidence 356666666654 2221222223344444555555555555555556666666667776
No 126
>KOG2736 consensus Presenilin [Signal transduction mechanisms]
Probab=29.55 E-value=2.2e+02 Score=27.21 Aligned_cols=6 Identities=0% Similarity=0.478 Sum_probs=2.2
Q ss_pred hhhHHH
Q 014358 126 AYLYAY 131 (426)
Q Consensus 126 ~y~~~~ 131 (426)
++.|.+
T Consensus 383 iFYF~t 388 (406)
T KOG2736|consen 383 IFYFST 388 (406)
T ss_pred HHHHHH
Confidence 333333
No 127
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=29.33 E-value=1.8e+02 Score=21.40 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=24.4
Q ss_pred CCCcccccChHHHHHHHhhhhhcchhhhchHHhh
Q 014358 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVA 87 (426)
Q Consensus 54 ~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~ 87 (426)
+++.-..+|.+|...+..+..++.+.+......+
T Consensus 10 e~ki~~GlT~RQl~~l~~~~~~~~~~~~~~~~~l 43 (93)
T PF12666_consen 10 EEKIFFGLTLRQLICLAIGALVGVGVYLLLWFFL 43 (93)
T ss_pred cchhccCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334457899999999999888877766554333
No 128
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=29.28 E-value=6.3e+02 Score=25.77 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhCCCCC-C-chhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 94 VTISFLLAGAASVLNALCYA-ELASRFPAVV-G-GAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVS 167 (426)
Q Consensus 94 ~~~~~il~~~~~~~~~~~~~-el~~~~p~~~-G-g~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 167 (426)
..++++++.++.+..++++. .+...+-+ + | -.-.+.++.+||+.+....-...+..++...+.....+..+.+
T Consensus 293 ~~i~~i~gw~~~I~i~~~i~~D~~~v~ns-~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~a 368 (550)
T KOG1289|consen 293 IAIGFILGWIIIIGIAYTIPDDLDAVLNS-SLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYA 368 (550)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHhcC-CCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 45666777777778888888 66666665 3 3 3556777889998886666666666566555555666665555
No 129
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=27.39 E-value=5.8e+02 Score=24.73 Aligned_cols=79 Identities=15% Similarity=0.275 Sum_probs=54.0
Q ss_pred hHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHH
Q 014358 128 LYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLAL 207 (426)
Q Consensus 128 ~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (426)
+.+++.+|+.-+.+.+....++...........+++++.... + ..| + ..+.+...+.
T Consensus 259 ~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~---~----k~~-y---------------~~~v~~~~l~ 315 (378)
T TIGR00796 259 AYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLV---P----KLS-Y---------------KTWVIVFTLF 315 (378)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C----CCC-H---------------HHHHHHHHHH
Confidence 567789999999999999999988888888888999988832 2 111 1 3344455555
Q ss_pred HHHHHHhhhhhhHHHHHHHHHH
Q 014358 208 LTIVLCWGVGESSVLNSCMTVV 229 (426)
Q Consensus 208 ~~~~~~~g~~~~~~~~~~~~~~ 229 (426)
...+...|.+..-++......+
T Consensus 316 s~~ia~~Gl~~Ii~~~~PvL~~ 337 (378)
T TIGR00796 316 SFIVANLGLTQIISISIPVLMI 337 (378)
T ss_pred HHHHHHhCHHHHHHHHHHHHHH
Confidence 5556666766666654444333
No 130
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=27.32 E-value=5.9e+02 Score=24.78 Aligned_cols=81 Identities=14% Similarity=-0.011 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccccc-ccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 292 LPIGILGSLLICAALYVGVSLVLTGMVPYK-FLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (426)
Q Consensus 292 ~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~ 370 (426)
-.-+...+.....+.+......-....... +...+..+....+++.|+.+..+..+..++..+....++....+..+..
T Consensus 29 ~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~ 108 (394)
T PF03222_consen 29 AGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVIGISYLFLLYALLVAYISGGGSILSS 108 (394)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 334455555555555555544433322111 1122456777888877888888888888888888888888888888777
Q ss_pred hH
Q 014358 371 LG 372 (426)
Q Consensus 371 ~a 372 (426)
.-
T Consensus 109 ~l 110 (394)
T PF03222_consen 109 LL 110 (394)
T ss_pred HH
Confidence 54
No 131
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=23.45 E-value=2.2e+02 Score=23.59 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=36.7
Q ss_pred HHHhhhhhcchhhhchHHhhhhcCch--HHHHHH--HHHHHHHHHHHHHHHHHhhCC-CCCCchhhHH
Q 014358 68 LIGVGASVGAGIFVVTGTVARDAGPG--VTISFL--LAGAASVLNALCYAELASRFP-AVVGGAYLYA 130 (426)
Q Consensus 68 ~l~~~~~ig~gi~~~~~~~~~~~G~~--~~~~~i--l~~~~~~~~~~~~~el~~~~p-~~~Gg~y~~~ 130 (426)
+.++=...|.+.|.....+....... .+..++ +.++..-+++++|+-|++..- .+.|...-|-
T Consensus 68 ~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGisYGilSaSWD~~r~GSllG~~ 135 (153)
T PF11947_consen 68 FVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGLLGISYGILSASWDPEREGSLLGWE 135 (153)
T ss_pred HhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCcccHH
Confidence 33333446667677766666554421 333333 333445588999999999974 4467665543
No 132
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=22.57 E-value=3.2e+02 Score=21.97 Aligned_cols=30 Identities=10% Similarity=0.129 Sum_probs=24.5
Q ss_pred hhhHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 014358 126 AYLYAYTAFNELTAFLVFAQLMLDYHIGAA 155 (426)
Q Consensus 126 ~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~ 155 (426)
+..+..+..|+.++|+.++...+.|.+..+
T Consensus 4 ~s~~is~~~gs~~~f~~~~~~Ii~W~i~Gp 33 (132)
T PF04120_consen 4 FSNWISDVAGSPWAFVIAVAVIIVWAISGP 33 (132)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHhc
Confidence 346778889999999999999988877654
Done!