Query 014358
Match_columns 426
No_of_seqs 168 out of 2140
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 10:08:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014358.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014358hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 8E-47 2.7E-51 373.0 33.3 348 55-424 4-363 (445)
2 3gia_A Uncharacterized protein 100.0 4.3E-46 1.5E-50 367.6 33.4 349 56-426 3-355 (444)
3 4djk_A Probable glutamate/gamm 100.0 6.2E-41 2.1E-45 336.6 30.9 328 53-403 5-350 (511)
4 2jln_A MHP1; hydantoin, transp 99.1 1.2E-07 4.2E-12 93.7 30.1 288 54-371 20-329 (501)
5 2xq2_A Sodium/glucose cotransp 98.2 0.0022 7.5E-08 64.6 31.1 283 58-368 48-377 (593)
6 3dh4_A Sodium/glucose cotransp 98.1 0.00084 2.9E-08 66.7 23.4 283 58-368 19-348 (530)
7 2a65_A Leutaa, Na(+):neurotran 97.7 0.039 1.3E-06 54.1 29.1 243 62-309 10-292 (519)
8 4ain_A Glycine betaine transpo 92.9 7.5 0.00026 37.9 24.3 24 58-81 93-116 (539)
9 2wsw_A BCCT family betaine/car 89.9 15 0.00051 35.6 29.2 25 57-81 87-111 (509)
10 2kr6_A Presenilin-1; protease, 11.6 5.9E+02 0.02 20.4 9.4 12 60-71 89-100 (176)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=8e-47 Score=372.97 Aligned_cols=348 Identities=24% Similarity=0.386 Sum_probs=294.5
Q ss_pred CCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHh
Q 014358 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (426)
Q Consensus 55 ~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~ 134 (426)
++++|++++++..++.++.++|+|+|..++.. ..+|+.++++|++++++.++.+++++|+++++|+ +||.|+|.++.+
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~-~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANL-ASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPS-PGGSYAYARRCF 81 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHH-HHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-TTTHHHHHHHHS
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCchhhHHhHc
Confidence 35679999999999999999999999998874 4578889999999999999999999999999999 999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHh
Q 014358 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (426)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (426)
||.+|++.+|.+++.+....+.+....+++++. .+|... ++ ....+++++++++++.+|++
T Consensus 82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~-------------~~~~~~~~~~~~~~~~in~~ 142 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSY---FFPILK---DP-------------WVLTITCVVVLWIFVLLNIV 142 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT---TCGGGG---SH-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCcccc---cc-------------HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999888888888887766 333211 11 12257788889999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCC-CCCCCc---hHHHHHHHHHHHHHhhhHHHHhhhhhhhCCCCC
Q 014358 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS-PFAPNG---FKEILTGATVVFFAYVGFDAVANSAEESKKPQR 290 (426)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k 290 (426)
|+|..+|++.+...++++.++.+++.++...+.+++. ++.+.+ +.+++.++....|+|.|+|.+++++||+|||+|
T Consensus 143 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r 222 (445)
T 3l1l_A 143 GPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR 222 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccc
Confidence 9999999999999999999998888887766655543 333333 557889999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 291 DLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYL 369 (426)
Q Consensus 291 ~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~ 369 (426)
++||++..+..+++++|++..+......|.+++. .+.|+.+++++.++++...++.+..+++.+++.++.+++.+|+++
T Consensus 223 ~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~ 302 (445)
T 3l1l_A 223 NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAK 302 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988874 457999999888888888899999999999999999999999999
Q ss_pred HhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhh-------CHHHHHHHHHHHHHh
Q 014358 370 GLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-------NVRVLSHILSVGTLL 424 (426)
Q Consensus 370 ~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~l~ 424 (426)
+|||||.+|++|+|+||+ ++|+++++++.+++.++.++. .++.+.++.+++.++
T Consensus 303 ~~a~dg~lP~~~~~~~~~-~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 363 (445)
T 3l1l_A 303 AAADDGLFPPIFARVNKA-GTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLV 363 (445)
T ss_dssp HHHHTTSSCGGGGCCCTT-CCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999985 999999999999887766553 234445555444433
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=4.3e-46 Score=367.61 Aligned_cols=349 Identities=25% Similarity=0.402 Sum_probs=310.8
Q ss_pred CcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhc
Q 014358 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (426)
Q Consensus 56 ~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g 135 (426)
+.||+++.++..+++++.++|+|++..++...+.+||..+++|++++++.++.+++++|+++++|+ +||.|+|+++.+|
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~-~Gg~y~~~~~~~G 81 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVS-NAGPIAFIHKAIG 81 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCC-TTTHHHHHHHHHC
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCcHHHhHHHHhC
Confidence 467999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHh
Q 014358 136 EL-TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (426)
Q Consensus 136 ~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (426)
|. .+...+|.+++.|....+.+...+++++...++ . ..++| ...+++.+++++++.+|++
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~---~~~~~-------------~~~~~~~~~~~~~~~in~~ 142 (444)
T 3gia_A 82 DNIITGALSILLWMSYVISIALFAKGFAGYFLPLIN---A---PINTF-------------NIAITEIGIVAFFTALNFF 142 (444)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---C---CCCHH-------------HHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---C---CCchH-------------HHHHHHHHHHHHHHHHHHH
Confidence 96 355568999999999999999999999988543 1 11111 1256788899999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC-CCCCchHHHHHHHHHHHHHhhhHHHHhhhhhhhCCCCCChh
Q 014358 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP-FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLP 293 (426)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p 293 (426)
|+|..+|++.+...++++.++.+++.++...+.+|+.+ +.++++.+++.++....|+|.|+|.+++++||+|||+|++|
T Consensus 143 g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip 222 (444)
T 3gia_A 143 GSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVP 222 (444)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchh
Confidence 99999999999999999999999888888777777776 44567778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCC--CChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014358 294 IGILGSLLICAALYVGVSLVLTGMVPYKFLDE--DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (426)
Q Consensus 294 ~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~~~ 371 (426)
|++..+..++.++|++..+......|.+++.. +.|+.++.+...+++...++.+..+++.+++.++.+++.+|++++|
T Consensus 223 ~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~ 302 (444)
T 3gia_A 223 RAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSL 302 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888887643 4578888887777888888999999999999999999999999999
Q ss_pred HhcCCCchhhhhhcCCCCCchHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhcC
Q 014358 372 GRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLLVL 426 (426)
Q Consensus 372 a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~ 426 (426)
||||.+|++|+|+|+ ++|.++++++.+++.++.++.+.+.+.++.+++.+++|
T Consensus 303 a~dg~lP~~f~~~~~--~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 355 (444)
T 3gia_A 303 AKDGELPEFFERKVW--FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIY 355 (444)
T ss_dssp HHHSSCCSSCCTTSC--CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHhCCCC--CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 999999999999985 56999999999999888888899888888888777653
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=6.2e-41 Score=336.61 Aligned_cols=328 Identities=19% Similarity=0.256 Sum_probs=250.9
Q ss_pred CCCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHH-HHHHHHHHHHHh--hCCCCCCchhhH
Q 014358 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAAS-VLNALCYAELAS--RFPAVVGGAYLY 129 (426)
Q Consensus 53 ~~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~~~~~~il~~~~~-~~~~~~~~el~~--~~p~~~Gg~y~~ 129 (426)
++++++|++++++..+++++.++| ++..+. ...+|+..++.+++++++. ++.+++++|+++ ++| +||.|+|
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P--~GG~y~~ 78 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMA--VYEYPT--FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE--EGGVFAW 78 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCC--GGGHHH--HHTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC-----CHHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHh--hchhHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC--CCChhhh
Confidence 456788999999999999999986 333333 4567888777777776665 579999999999 999 6999999
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHH
Q 014358 130 AYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (426)
Q Consensus 130 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (426)
++|.+||.+|++.||.+++.+....+......++++..++. .|.. ..+.| ...+++++++++++
T Consensus 79 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~--~~~~~-------------~~~~~~~~~~~~~~ 142 (511)
T 4djk_A 79 VSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK-WPAL--NEDPI-------------TKTIAALIILWALA 142 (511)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT-CGGG--TSCSS-------------HHHHHHHHHHHHHH
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cccc--ccCcH-------------HHHHHHHHHHHHHH
Confidence 99999999999999999999999988888888887765321 1211 11112 22678888999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHH-HHHHHhhhcccc---cc----cCCCCCCCCc-hHHHHHHHHHHHHHhhhHHHHhh
Q 014358 210 IVLCWGVGESSVLNSCMTVVKVII-VIVVIFAGAFEV---DV----SNWSPFAPNG-FKEILTGATVVFFAYVGFDAVAN 280 (426)
Q Consensus 210 ~~~~~g~~~~~~~~~~~~~~~i~~-~~~~~i~~~~~~---~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~G~e~~~~ 280 (426)
.+|++|+|..+|++.+...++++. ++++++.++... +. .++.++.|+. ..+.+.++...+|+|.|+|.+++
T Consensus 143 ~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~ 222 (511)
T 4djk_A 143 LTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASAT 222 (511)
T ss_dssp HHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTG
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999988775443 444444443321 11 1233333331 12344567778999999999999
Q ss_pred hhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHH----HHcC--hhHHHHHHHHHHHHHHH
Q 014358 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAF----ASRG--LKYVSVLISFGAVAGLT 354 (426)
Q Consensus 281 ~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~s~~ 354 (426)
++||+|||+|++||++..++.++.++|++..++.....|++++..+++..+.+ +..+ .++...++.+.++++.+
T Consensus 223 ~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 302 (511)
T 4djk_A 223 HVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVL 302 (511)
T ss_dssp GGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHH
T ss_pred HHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887655544433 3445 57788889999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCCchhhhhhcCCCCCchHHHHHHHHHHH
Q 014358 355 TTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAG 403 (426)
Q Consensus 355 ~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~ 403 (426)
++.++.+++.+|+++++||||.+|++|+|+||+ ++|++|++++.++..
T Consensus 303 ~~~~~~~~~~sR~l~a~ardg~lP~~~~~~~~~-~~P~~ai~~~~~~~~ 350 (511)
T 4djk_A 303 AEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKN-GVPVTLVISQLVITS 350 (511)
T ss_dssp HHHHHHTTHHHHHTCHHHHGGGCSSSCCCCCSS-SCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCcccHHHHhcCCC-CCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999985 999999999854443
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.10 E-value=1.2e-07 Score=93.68 Aligned_cols=288 Identities=12% Similarity=0.024 Sum_probs=167.5
Q ss_pred CCCcccccChHHHHHHHhhhhhcchhhhchHHhhhhcCch---HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHH
Q 014358 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYA 130 (426)
Q Consensus 54 ~~~l~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~---~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~ 130 (426)
-++.+|+.++++.+.+=++..+..+.+..-+.... |.. ++++.+++.++........+.++.+.-. ......
T Consensus 20 vp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~--GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl---~~~v~~ 94 (501)
T 2jln_A 20 TRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTS--SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGI---NFTVAA 94 (501)
T ss_dssp CCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCC---CHHHHT
T ss_pred CChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCC---Chhhhh
Confidence 34456789999999888887776665554443333 543 5555555555554444444555555433 355678
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccccCCCccccCCCccccccchhhHHHHHHHHHHHH
Q 014358 131 YTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE-LFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (426)
Q Consensus 131 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (426)
|..||++.+.+..+...+..+...+.+....++.+..++. +++ ..+. .+..+++.++..
T Consensus 95 R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g----~~~~----------------~v~~~i~~~l~~ 154 (501)
T 2jln_A 95 RMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTG----FTNL----------------PLWIVIFGAIQV 154 (501)
T ss_dssp TTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCH----------------HHHHHHHHHHHH
T ss_pred HhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cchH----------------HHHHHHHHHHHH
Confidence 8899999999988888888777778777777777776542 111 1111 234445566677
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccc--cCCCCCCC-CchHHHHHHHHH-HHHHhhhHHHHhhhhhhh
Q 014358 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDV--SNWSPFAP-NGFKEILTGATV-VFFAYVGFDAVANSAEES 285 (426)
Q Consensus 210 ~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~-~~~~~~G~e~~~~~~~E~ 285 (426)
.+...|.|...+++.+...+.++..+.+.+..+...+. .+.....+ ....+++.++.. ..+...+....+.++.+.
T Consensus 155 ~~~~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~ 234 (501)
T 2jln_A 155 VTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKEC 234 (501)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTB
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccC
Confidence 77889999999999999888877777666655544332 11111111 222245555543 233334445577888888
Q ss_pred CCCCCC-----------hhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHH-HHHHH-HHHHHH
Q 014358 286 KKPQRD-----------LPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYV-SVLIS-FGAVAG 352 (426)
Q Consensus 286 k~p~k~-----------~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~s 352 (426)
|++++. .-.+...+..+...+..+........ ....+|...+.+...++.. ..+.. +.++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~-----~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la 309 (501)
T 2jln_A 235 KVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVL-----VGEWNPVIAITEVVGGVSIPMAILFQVFVLLA 309 (501)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred CCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccCHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 886541 33333333333332222222221111 1223455444443323322 55666 777788
Q ss_pred HHHHHHH-HHHHHHHHHHHh
Q 014358 353 LTTTLLV-GLYVQSRLYLGL 371 (426)
Q Consensus 353 ~~~~~~~-~~~~~sR~l~~~ 371 (426)
..++... ..+.++--+..+
T Consensus 310 ~i~tn~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 310 TWSTNPAANLLSPAYTLCST 329 (501)
T ss_dssp HHTTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHh
Confidence 8777764 788888777775
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.25 E-value=0.0022 Score=64.60 Aligned_cols=283 Identities=12% Similarity=0.060 Sum_probs=147.4
Q ss_pred ccccChHHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhch
Q 014358 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (426)
Q Consensus 58 ~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~ 136 (426)
.|+++++....-.+++.+++.-+..........|.. .++.|.. .+.....+..+...-++.. .-..++|.++.||+
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~p~~~r~~--~~T~~e~l~~Rfg~ 124 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIEKG--IYTIPEFVEKRFNK 124 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHH-HHHHHHHHHTHHHHHHHTT--CCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHhCC--CCCcHHHHHHHccC
Confidence 478888877666666666666665554333335643 4343332 2222333444555545543 36899999999999
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhh
Q 014358 137 LTAFLVFAQLMLDYH-IGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (426)
Q Consensus 137 ~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (426)
....+.+....+.+. ...+......+..++..++ .+.| ..+.+...+...+....|
T Consensus 125 ~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------i~~~---------------~~i~i~~~i~~~Yt~~GG 181 (593)
T 2xq2_A 125 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------IPLM---------------YSILGLALFALVYSIYGG 181 (593)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------CCHH---------------HHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------ccHH---------------HHHHHHHHHHHHHHHhcc
Confidence 888777766655444 3455566666666766443 1211 122233334455566678
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhccccc----------------ccCCCCCCCCc--------hHHHHH-HHHHHHH
Q 014358 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEVD----------------VSNWSPFAPNG--------FKEILT-GATVVFF 270 (426)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~----------------~~~~~~~~~~~--------~~~~~~-~~~~~~~ 270 (426)
.|...+...+-.+++++..+.+.+..+...+ .+.++.+.+.+ +...+. +......
T Consensus 182 l~av~~TD~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 261 (593)
T 2xq2_A 182 LSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANL 261 (593)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHH
Confidence 8888887777777766665554443332111 12222111111 111111 1212223
Q ss_pred HhhhHH-HHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHHHH---Hhc-cc--------------cccc-CCCChHH
Q 014358 271 AYVGFD-AVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVL---TGM-VP--------------YKFL-DEDAPLS 330 (426)
Q Consensus 271 ~~~G~e-~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~---~~~-~~--------------~~~~-~~~~~~~ 330 (426)
.+.|.+ ...+..=+.||+ |+..|+...+......+.++....- ... .+ ..++ +.+..+.
T Consensus 262 ~~~~~~q~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p 340 (593)
T 2xq2_A 262 YYWGFNQYIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYP 340 (593)
T ss_dssp HHHTTTCSHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHH
T ss_pred HhhcCChHHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHH
Confidence 344444 244555577885 6788888877766554444322111 111 00 1112 1233344
Q ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 331 DAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 368 (426)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l 368 (426)
... +..++++.-++...++.+..++..+.+++.+-++
T Consensus 341 ~l~-~~lp~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 341 WLT-QFLPVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp HHH-HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 5566777777777778888888878777777654
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.07 E-value=0.00084 Score=66.71 Aligned_cols=283 Identities=12% Similarity=0.078 Sum_probs=142.6
Q ss_pred ccccChHHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhHHHHHhch
Q 014358 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (426)
Q Consensus 58 ~r~l~~~~~~~l~~~~~ig~gi~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~ 136 (426)
.|+++++....-.+++.+++..+.......-..|.. ..+.|.. .+.....+..+...-++.. .-..++|.++.||+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~~~--~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIEKG--IYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHHTT--CCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHHcC--CccHHHHHHHHcCc
Confidence 488999998888888777766666555444445654 3333332 2222333444444444442 46899999999999
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccccccccCCCccccCCCccccccchhhHHHHHHHHHHHHHHHHhh
Q 014358 137 LTAFLVFAQLMLDYHI-GAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (426)
Q Consensus 137 ~~g~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (426)
....+.+....+.+.. ..+......+..++..++ .+.| ..+.+..++.+.+...-|
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G--------i~~~---------------~~i~i~~~i~~~Yt~~GG 152 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------IPLM---------------YSILGLALFALVYSIYGG 152 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--------CCHH---------------HHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHH---------------HHHHHHHHHHHHHHHhcc
Confidence 8888777766554443 345555555666666433 1211 112222233334445568
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhcccc----------------cccCCCCC----CC-----CchHHHHHHHHHHHH
Q 014358 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEV----------------DVSNWSPF----AP-----NGFKEILTGATVVFF 270 (426)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~----------------~~~~~~~~----~~-----~~~~~~~~~~~~~~~ 270 (426)
.|...+...+-.++.++..+++.+..+... +.+.+..+ .+ .++...+.+......
T Consensus 153 l~aV~~TD~iQ~~im~~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 232 (530)
T 3dh4_A 153 LSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANL 232 (530)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHH
Confidence 888877777766666655544443332211 11111111 01 111111111112223
Q ss_pred HhhhHH-HHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHHHHH---HHHhcccc---------------ccc-CCCChHH
Q 014358 271 AYVGFD-AVANSAEESKKPQRDLPIGILGSLLICAALYVGVSL---VLTGMVPY---------------KFL-DEDAPLS 330 (426)
Q Consensus 271 ~~~G~e-~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~---~~~~~~~~---------------~~~-~~~~~~~ 330 (426)
.|.|.+ ...+-.=..||+ |+..|+..++......+.++..+ +.....+. .+. +.+..+.
T Consensus 233 ~~~g~~q~i~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p 311 (530)
T 3dh4_A 233 YYWGFNQYIIQRTLAAKSV-SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYP 311 (530)
T ss_dssp HHTTTTCHHHHHHHSSSCH-HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHH
T ss_pred HHHcCCHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHH
Confidence 334432 133333446775 56788887776554333222111 11111100 112 2233444
Q ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014358 331 DAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 368 (426)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l 368 (426)
...+ ..++++.-++...++.+..++..+.+++.+-.+
T Consensus 312 ~l~~-~lp~~l~Gl~~a~llAA~mST~ss~l~s~st~~ 348 (530)
T 3dh4_A 312 WLTQ-FLPVGVKGVVFAALAAAIVSSLASMLNSTATIF 348 (530)
T ss_dssp HHHT-TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4444 556677777777778888888888888777654
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.75 E-value=0.039 Score=54.07 Aligned_cols=243 Identities=14% Similarity=0.100 Sum_probs=127.5
Q ss_pred ChHHHHHHHhhhhhcchhhhchHHhh-hhcCchHHHHHHHHHHH-HHHHHHHHHHHHh---hCCCCCCchhhHHHHHhch
Q 014358 62 GLFELVLIGVGASVGAGIFVVTGTVA-RDAGPGVTISFLLAGAA-SVLNALCYAELAS---RFPAVVGGAYLYAYTAFNE 136 (426)
Q Consensus 62 ~~~~~~~l~~~~~ig~gi~~~~~~~~-~~~G~~~~~~~il~~~~-~~~~~~~~~el~~---~~p~~~Gg~y~~~~~~~g~ 136 (426)
+..+.+.-++|..+|.|-..+..... +++|.+-++.+++..++ .+|..+.=.-+++ +.-+ .|..-.|-+ ...+
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r-~~~i~a~~~-l~~~ 87 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGH-GTTPAIFYL-LWRN 87 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTC-CSHHHHHHH-HSCS
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccC-CCHHHHHHH-hcCC
Confidence 45667777888899999888888666 44454555555554443 4444433333334 2333 344444432 2221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccc--ccccCC-C-------cccc---CC--C-ccccccchh
Q 014358 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILE----LFP--FFKENI-P-------SWIG---HG--G-EEFLGGTLS 196 (426)
Q Consensus 137 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~-~-------~~~~---~~--~-~~~~~~~~~ 196 (426)
+.....||...+.......-+....+-.+.+++. .+| +..+.. . .+.. .. . ++.......
T Consensus 88 ~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~~~~ 167 (519)
T 2a65_A 88 RFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLF 167 (519)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCCCHH
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCccHH
Confidence 1222234433333222222222222222222221 222 110000 0 0000 00 0 000001123
Q ss_pred hHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhhccccc----c---------cCCCCCCCCchHHHH
Q 014358 197 INILAPILLALLTIVLCWGV-GESSVLNSCMTVVKVIIVIVVIFAGAFEVD----V---------SNWSPFAPNGFKEIL 262 (426)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~----~---------~~~~~~~~~~~~~~~ 262 (426)
..+...+..+++..+..+|+ |-..|+..++..+..+.++++.+-++...+ . .+|+... +..-+.
T Consensus 168 ~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~--~~~vw~ 245 (519)
T 2a65_A 168 AYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLK--DPGVWI 245 (519)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTT--CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhC--CHHHHH
Confidence 34444566667777788899 779999999988877777777666554322 0 1222221 234578
Q ss_pred HHHHHHHHHhh-hHHHHhhhhhhhCCCCCChhHHHHHHHHHHHHHHHH
Q 014358 263 TGATVVFFAYV-GFDAVANSAEESKKPQRDLPIGILGSLLICAALYVG 309 (426)
Q Consensus 263 ~~~~~~~~~~~-G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~ 309 (426)
.++..++|++. |+-....++.-.|+ +.|++|.-.........+-++
T Consensus 246 ~A~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sll 292 (519)
T 2a65_A 246 AAVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEVI 292 (519)
T ss_dssp HHHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHHH
Confidence 88899999885 88888888888887 678888766666665555443
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=92.85 E-value=7.5 Score=37.86 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=20.1
Q ss_pred ccccChHHHHHHHhhhhhcchhhh
Q 014358 58 LRRLGLFELVLIGVGASVGAGIFV 81 (426)
Q Consensus 58 ~r~l~~~~~~~l~~~~~ig~gi~~ 81 (426)
|.++|.++.+.+.++.-+|.|+.+
T Consensus 93 kPefS~~sW~aMlF~AGmGiGl~F 116 (539)
T 4ain_A 93 APEFRTVSWISMMFAAGMGIGLMF 116 (539)
T ss_dssp CCSSCHHHHHHHHHTTSCCTHHHH
T ss_pred CCCCcchHHHHHHHHHhhcchhee
Confidence 467999999999999888888764
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=89.86 E-value=15 Score=35.56 Aligned_cols=25 Identities=4% Similarity=0.100 Sum_probs=20.3
Q ss_pred cccccChHHHHHHHhhhhhcchhhh
Q 014358 57 LLRRLGLFELVLIGVGASVGAGIFV 81 (426)
Q Consensus 57 l~r~l~~~~~~~l~~~~~ig~gi~~ 81 (426)
.|.+++.++-+.+.++.-+|.|+..
T Consensus 87 ~kPefs~~sW~aMlF~aGmGiGl~f 111 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTSAAVLF 111 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCccchHHHHHHHHhhhhHHhh
Confidence 4557999999999999888888654
No 10
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=11.56 E-value=5.9e+02 Score=20.39 Aligned_cols=12 Identities=33% Similarity=0.694 Sum_probs=7.2
Q ss_pred ccChHHHHHHHh
Q 014358 60 RLGLFELVLIGV 71 (426)
Q Consensus 60 ~l~~~~~~~l~~ 71 (426)
||++-+.++.++
T Consensus 89 kLGLGDFIFYSv 100 (176)
T 2kr6_A 89 KLGLGDFIFYSV 100 (176)
T ss_dssp SSCTTTHHHHHH
T ss_pred cccccCeeehHH
Confidence 666666665543
Done!