Query 014360
Match_columns 426
No_of_seqs 160 out of 354
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 10:10:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vg5_A RSGI RUH-014, rhomboid 46.8 5.3 0.00018 31.7 0.6 36 39-76 8-43 (73)
2 2knz_A Ubiquilin-4; cytoplasm, 27.7 23 0.00077 26.0 1.4 15 61-76 11-26 (53)
3 1ify_A HHR23A, UV excision rep 22.6 45 0.0015 24.0 2.1 14 62-76 9-22 (49)
4 2o6n_A RH4B designed peptide; 20.5 55 0.0019 22.8 2.1 19 77-95 7-25 (35)
5 1vej_A Riken cDNA 4931431F19; 17.3 40 0.0014 26.8 0.9 35 62-97 30-67 (74)
6 3t5v_A Nuclear mRNA export pro 13.8 49 0.0017 32.1 0.7 20 67-86 229-248 (316)
7 2ysr_A DEP domain-containing p 13.2 55 0.0019 27.0 0.7 11 77-87 43-53 (105)
8 1v54_E Cytochrome C oxidase po 12.0 2.6E+02 0.009 24.0 4.6 36 59-96 61-97 (109)
9 1yhn_B RILP, RAB interacting l 11.2 36 0.0012 27.0 -0.9 35 61-95 15-54 (65)
10 1uxc_A FRUR (1-57), fructose r 11.0 1.2E+02 0.0041 22.7 1.9 23 55-77 28-50 (65)
No 1
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=46.81 E-value=5.3 Score=31.73 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=24.4
Q ss_pred CCccccccCCCCCCceeecCHHHHHHHhhhhhhhCCCC
Q 014360 39 DRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDR 76 (426)
Q Consensus 39 DRHsKv~ta~g~RdRRvRls~~~A~~ff~Lqd~LG~dk 76 (426)
-||+-|.+|.+.--+ .+....+-.++=.|.+| ||++
T Consensus 8 ~r~~~~~~a~~~~~~-~~~~~~~ee~I~~L~eM-GF~r 43 (73)
T 1vg5_A 8 SRQAPIANAAVLPQS-QGRVAASEEQIQKLVAM-GFDR 43 (73)
T ss_dssp CCCCCCSCCCCCSSS-CCCSCCCHHHHHHHHTT-TCCH
T ss_pred ccccccccCCCCCCC-ccCCcccHHHHHHHHHc-CCCH
Confidence 467777777665544 45666666777788875 8974
No 2
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=27.68 E-value=23 Score=25.97 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=9.4
Q ss_pred HHHHHhhhhhhhCC-CC
Q 014360 61 TAIQFYDVQDRLGY-DR 76 (426)
Q Consensus 61 ~A~~ff~Lqd~LG~-dk 76 (426)
+..++=.|.+| || |+
T Consensus 11 ~~~~l~~L~~M-GF~~~ 26 (53)
T 2knz_A 11 FQQQLEQLNSM-GFINR 26 (53)
T ss_dssp HHHHHHHHHTT-TCCCH
T ss_pred HHHHHHHHHHc-CCCCH
Confidence 34556667765 88 53
No 3
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.61 E-value=45 Score=23.99 Aligned_cols=14 Identities=21% Similarity=0.570 Sum_probs=7.6
Q ss_pred HHHHhhhhhhhCCCC
Q 014360 62 AIQFYDVQDRLGYDR 76 (426)
Q Consensus 62 A~~ff~Lqd~LG~dk 76 (426)
..++=.|.+| ||++
T Consensus 9 ~~~i~~L~~M-GF~~ 22 (49)
T 1ify_A 9 ETMLTEIMSM-GYER 22 (49)
T ss_dssp HHHHHHHHHT-TCCH
T ss_pred HHHHHHHHHc-CCCH
Confidence 3445556655 6653
No 4
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=20.46 E-value=55 Score=22.82 Aligned_cols=19 Identities=47% Similarity=0.550 Sum_probs=15.5
Q ss_pred CChhHHHHHHhcHHHHHHH
Q 014360 77 PSKAVDWLIKKAKAAIDEL 95 (426)
Q Consensus 77 ~skTveWLL~~ak~AI~~l 95 (426)
+-|-|.||+++||..|-+-
T Consensus 7 akkeiaylikkakeeilee 25 (35)
T 2o6n_A 7 AKKEIAYLIKKAKEEILEE 25 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4578999999999988653
No 5
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=17.30 E-value=40 Score=26.81 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=17.6
Q ss_pred HHHHhhhhhhhCCCCCChhHHHHHH---hcHHHHHHHhc
Q 014360 62 AIQFYDVQDRLGYDRPSKAVDWLIK---KAKAAIDELAE 97 (426)
Q Consensus 62 A~~ff~Lqd~LG~dk~skTveWLL~---~ak~AI~~l~~ 97 (426)
..++=.|.+| ||....+.|.=|.. ..+.||+.|-.
T Consensus 30 e~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3456667776 88433333333332 34455555544
No 6
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=13.81 E-value=49 Score=32.12 Aligned_cols=20 Identities=5% Similarity=0.187 Sum_probs=17.7
Q ss_pred hhhhhhCCCCCChhHHHHHH
Q 014360 67 DVQDRLGYDRPSKAVDWLIK 86 (426)
Q Consensus 67 ~Lqd~LG~dk~skTveWLL~ 86 (426)
.|+++||||...++++||-.
T Consensus 229 ~L~~~L~Fds~ee~~~F~~~ 248 (316)
T 3t5v_A 229 YLENMLLFNNRQEIIEFCNY 248 (316)
T ss_dssp HHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHH
Confidence 58999999999999999843
No 7
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=13.16 E-value=55 Score=26.98 Aligned_cols=11 Identities=45% Similarity=0.857 Sum_probs=9.6
Q ss_pred CChhHHHHHHh
Q 014360 77 PSKAVDWLIKK 87 (426)
Q Consensus 77 ~skTveWLL~~ 87 (426)
.+++||||++.
T Consensus 43 GsE~VdWL~~~ 53 (105)
T 2ysr_A 43 AGEAVDWLYDL 53 (105)
T ss_dssp HHHHHHHHHHH
T ss_pred chHHHHHHHHh
Confidence 68999999876
No 8
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=12.05 E-value=2.6e+02 Score=24.00 Aligned_cols=36 Identities=19% Similarity=0.472 Sum_probs=29.2
Q ss_pred HHHHHHHhh-hhhhhCCCCCChhHHHHHHhcHHHHHHHh
Q 014360 59 AHTAIQFYD-VQDRLGYDRPSKAVDWLIKKAKAAIDELA 96 (426)
Q Consensus 59 ~~~A~~ff~-Lqd~LG~dk~skTveWLL~~ak~AI~~l~ 96 (426)
..+|.|||. +.+..|-+ .+.-.|+|+.-|+-++||-
T Consensus 61 ~alAVR~lE~iK~K~~~~--~~iY~~~lqElkPtl~ELG 97 (109)
T 1v54_E 61 FASAVRILEVVKDKAGPH--KEIYPYVIQELRPTLNELG 97 (109)
T ss_dssp HHHHHHHHHHHHHHTTTC--TTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCc--hhhHHHHHHHHhhHHHHhC
Confidence 678999998 55566554 4569999999999999995
No 9
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=11.20 E-value=36 Score=26.95 Aligned_cols=35 Identities=14% Similarity=0.295 Sum_probs=27.0
Q ss_pred HHHHHhhhhhhhCCCC-----CChhHHHHHHhcHHHHHHH
Q 014360 61 TAIQFYDVQDRLGYDR-----PSKAVDWLIKKAKAAIDEL 95 (426)
Q Consensus 61 ~A~~ff~Lqd~LG~dk-----~skTveWLL~~ak~AI~~l 95 (426)
.-+++|.|||+|-|-+ +...--.||...|.||++-
T Consensus 15 LKa~vf~lqeEL~yY~~e~l~~~~~p~~ll~a~k~aikkq 54 (65)
T 1yhn_B 15 LKAKVFLLKEELAYFQRELLTDHRVPSLLLEAMKVAVRKQ 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHH
Confidence 4568999999998754 3445568999999999864
No 10
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=10.95 E-value=1.2e+02 Score=22.71 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.1
Q ss_pred eecCHHHHHHHhhhhhhhCCCCC
Q 014360 55 VRLSAHTAIQFYDVQDRLGYDRP 77 (426)
Q Consensus 55 vRls~~~A~~ff~Lqd~LG~dk~ 77 (426)
.+++.+++.++..+-++|||...
T Consensus 28 ~~vs~et~~rI~~aa~~lgY~pn 50 (65)
T 1uxc_A 28 YRVSDKTVEKVMAVVREHNYHPN 50 (65)
T ss_dssp TTCTTHHHHHHHHHHHHHTCCCC
T ss_pred CCCCHHHHHHHHHHHHHhCCCcc
Confidence 46899999999999999999743
Done!