Query 014360
Match_columns 426
No_of_seqs 160 out of 354
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 10:10:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014360.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014360hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j5ya1 a.8.1.2 (A:1-53) PAB { 50.8 3.5 0.00025 29.7 1.9 16 82-97 4-20 (53)
2 d1weoa_ g.44.1.1 (A:) Cellulos 20.2 20 0.0015 28.1 1.8 18 400-419 75-92 (93)
3 d1oc2a_ c.2.1.2 (A:) dTDP-gluc 18.7 36 0.0026 28.9 3.3 43 49-97 283-335 (346)
4 d1rpna_ c.2.1.2 (A:) GDP-manno 16.9 32 0.0023 28.5 2.5 23 68-90 291-320 (321)
5 d2hzaa1 a.43.1.3 (A:1-48) Nick 14.0 59 0.0043 22.3 2.8 34 55-88 6-39 (48)
6 d1irza_ a.4.1.11 (A:) Arr10-B 11.4 1E+02 0.0076 21.9 3.6 29 50-78 3-31 (64)
7 d1fsha_ a.4.5.31 (A:) Segment 10.3 36 0.0027 25.6 0.7 12 77-88 42-53 (94)
8 d1ecsa_ d.32.1.2 (A:) Bleomyci 10.2 49 0.0035 23.6 1.4 15 59-76 13-27 (120)
9 d1wjia_ a.5.2.1 (A:) Tudor dom 10.2 45 0.0033 23.5 1.2 29 57-89 21-49 (63)
10 d2bj7a1 a.43.1.3 (A:1-50) Nick 10.1 79 0.0058 21.8 2.4 34 55-88 8-41 (50)
No 1
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]}
Probab=50.83 E-value=3.5 Score=29.66 Aligned_cols=16 Identities=56% Similarity=0.951 Sum_probs=13.4
Q ss_pred HHHHHhcH-HHHHHHhc
Q 014360 82 DWLIKKAK-AAIDELAE 97 (426)
Q Consensus 82 eWLL~~ak-~AI~~l~~ 97 (426)
+|||++|| .||.||..
T Consensus 4 ~~~Lk~AKe~AI~eLK~ 20 (53)
T d2j5ya1 4 QWLLKNAKEDAIAELKK 20 (53)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 79999997 57899875
No 2
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=20.19 E-value=20 Score=28.10 Aligned_cols=18 Identities=39% Similarity=0.831 Sum_probs=13.6
Q ss_pred ccccCcccccCCCCCCCCCC
Q 014360 400 ARIQGEDEEHDHGIHNRPSS 419 (426)
Q Consensus 400 ARIQGEeEeh~~g~sdkPsS 419 (426)
+||.|+|||. .+.|+|+|
T Consensus 75 prv~gDe~e~--~~d~~p~~ 92 (93)
T d1weoa_ 75 PRVEGDEDEE--DIDSGPSS 92 (93)
T ss_dssp CCCTTSCCCC--CSCCCCSC
T ss_pred CCCCCCcccc--ccccCCCC
Confidence 5788986554 58899987
No 3
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}
Probab=18.66 E-value=36 Score=28.87 Aligned_cols=43 Identities=23% Similarity=0.474 Sum_probs=26.6
Q ss_pred CCCCceeecCHHHHHHHhhhhhhhCCCCC-C-------hhHHHHHHhcH--HHHHHHhc
Q 014360 49 GPRDRRVRLSAHTAIQFYDVQDRLGYDRP-S-------KAVDWLIKKAK--AAIDELAE 97 (426)
Q Consensus 49 g~RdRRvRls~~~A~~ff~Lqd~LG~dk~-s-------kTveWLL~~ak--~AI~~l~~ 97 (426)
.+.+.|.-++..- +++.|||.-- + |||+|++++-+ .+.+++++
T Consensus 283 ~~~~~~~~~d~~k------~~~~LGw~P~~t~l~e~i~~ti~w~~~n~~~~~~~k~~~~ 335 (346)
T d1oc2a_ 283 AGHDLRYAIDASK------LRDELGWTPQFTDFSEGLEETIQWYTDNQDWWKAEKEAVE 335 (346)
T ss_dssp TTCCCBCCBCCHH------HHHHHCCCCSCCCHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CCCCceeeeCHHH------HHHHHCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344444454443 3467888732 3 78999999765 56777665
No 4
>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=16.87 E-value=32 Score=28.45 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=16.0
Q ss_pred hhhhhCCCCC-C------hhHHHHHHhcHH
Q 014360 68 VQDRLGYDRP-S------KAVDWLIKKAKA 90 (426)
Q Consensus 68 Lqd~LG~dk~-s------kTveWLL~~ak~ 90 (426)
+..+|||.-. + |||||-|+++|.
T Consensus 291 ~~k~lG~~P~~~l~e~i~~tv~~~l~~~~~ 320 (321)
T d1rpna_ 291 AQRVLGWKPRTSLDELIRMMVEADLRRVSR 320 (321)
T ss_dssp HHHHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCcCCCHHHHHHHHHHHHHHHhcC
Confidence 4566898632 2 789998887663
No 5
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.02 E-value=59 Score=22.31 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=31.1
Q ss_pred eecCHHHHHHHhhhhhhhCCCCCChhHHHHHHhc
Q 014360 55 VRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKA 88 (426)
Q Consensus 55 vRls~~~A~~ff~Lqd~LG~dk~skTveWLL~~a 88 (426)
|.|+-+...+|=.+..+.||..-|++|.=|++..
T Consensus 6 Vslp~~Ll~~lD~~v~~~gy~nRSEaIRdliR~~ 39 (48)
T d2hzaa1 6 ITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSA 39 (48)
T ss_dssp EEECHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 6789999999999999999999999999998764
No 6
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=11.39 E-value=1e+02 Score=21.94 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=25.7
Q ss_pred CCCceeecCHHHHHHHhhhhhhhCCCCCC
Q 014360 50 PRDRRVRLSAHTAIQFYDVQDRLGYDRPS 78 (426)
Q Consensus 50 ~RdRRvRls~~~A~~ff~Lqd~LG~dk~s 78 (426)
.|-.|+|-+.+.-.+|-+-=..||.|++.
T Consensus 3 ~kk~R~~WT~elH~~Fv~Av~~lG~~~at 31 (64)
T d1irza_ 3 QKKPRVLWTHELHNKFLAAVDHLGVERAV 31 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCccccc
Confidence 46678999999999999999999998764
No 7
>d1fsha_ a.4.5.31 (A:) Segment polarity protein Dishevelled-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.29 E-value=36 Score=25.63 Aligned_cols=12 Identities=33% Similarity=0.736 Sum_probs=10.0
Q ss_pred CChhHHHHHHhc
Q 014360 77 PSKAVDWLIKKA 88 (426)
Q Consensus 77 ~skTveWLL~~a 88 (426)
.++.|+||+++.
T Consensus 42 G~e~V~WL~~~~ 53 (94)
T d1fsha_ 42 GADVVDWLYTHV 53 (94)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhc
Confidence 678999999864
No 8
>d1ecsa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Klebsiella pneumoniae [TaxId: 573]}
Probab=10.21 E-value=49 Score=23.57 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=11.6
Q ss_pred HHHHHHHhhhhhhhCCCC
Q 014360 59 AHTAIQFYDVQDRLGYDR 76 (426)
Q Consensus 59 ~~~A~~ff~Lqd~LG~dk 76 (426)
++-|++|| ++ |||+.
T Consensus 13 l~~s~~FY--~~-LGf~~ 27 (120)
T d1ecsa_ 13 FDSTAAFY--ER-LGFGI 27 (120)
T ss_dssp HHHHHHHH--HT-TTCEE
T ss_pred HHHHHHHH--HH-cCCee
Confidence 67889999 35 99863
No 9
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.20 E-value=45 Score=23.46 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=18.0
Q ss_pred cCHHHHHHHhhhhhhhCCCCCChhHHHHHHhcH
Q 014360 57 LSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAK 89 (426)
Q Consensus 57 ls~~~A~~ff~Lqd~LG~dk~skTveWLL~~ak 89 (426)
++-..|++=+... +. ...++|+|||....
T Consensus 21 F~~~~a~~AL~~~---~~-~~e~A~~wL~~~~~ 49 (63)
T d1wjia_ 21 FSKEASRQALMDN---GN-NLEAALNVLLTSNK 49 (63)
T ss_dssp CCHHHHHHHHHHT---TS-CHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHh---CC-CHHHHHHHHHHCCC
Confidence 3445555544333 22 47799999999853
No 10
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=10.12 E-value=79 Score=21.84 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=30.4
Q ss_pred eecCHHHHHHHhhhhhhhCCCCCChhHHHHHHhc
Q 014360 55 VRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKA 88 (426)
Q Consensus 55 vRls~~~A~~ff~Lqd~LG~dk~skTveWLL~~a 88 (426)
|.|+-+...+|=.+..+.||..-|++|.=|+++.
T Consensus 8 vslp~~Ll~~lD~~v~~~gy~nRSEaIRdliR~~ 41 (50)
T d2bj7a1 8 ISIPSKLLEKFDQIIEEIGYENRSEAIRDLIRDF 41 (50)
T ss_dssp EEEEHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 6788899999999999999999999999888753
Done!