Query 014361
Match_columns 426
No_of_seqs 190 out of 523
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 10:11:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rce_A Oligosaccharide transfe 37.0 4.4E+02 0.015 28.6 15.2 151 33-191 20-192 (724)
2 2k37_A Chlorosome protein A; b 7.0 3.2E+02 0.011 20.1 2.8 21 360-380 21-41 (59)
3 2liy_A Epidermal patterning fa 4.6 1E+02 0.0035 21.3 -1.1 16 5-20 18-33 (45)
4 3ixz_B Potassium-transporting 4.6 6.6E+02 0.023 24.0 4.3 46 371-417 26-80 (290)
5 2f8e_A VPG protein; RNA-depend 4.3 2.3E+02 0.0077 17.3 0.4 13 83-95 2-14 (26)
6 2xl1_A Arginine attenuator pep 3.3 3.3E+02 0.011 16.3 0.5 8 322-329 6-13 (26)
7 3dcg_E Virion infectivity fact 3.0 2.7E+02 0.0091 18.8 -0.1 19 320-342 2-20 (39)
8 2k3u_B C5AR(P7-28S) peptide, c 2.6 4.5E+02 0.015 15.7 0.6 16 50-66 6-22 (26)
9 1vry_A Glycine receptor alpha- 2.5 1.9E+03 0.063 16.5 4.8 36 15-50 23-58 (76)
10 2dw3_A Intrinsic membrane prot 2.3 2E+03 0.07 16.6 6.5 41 354-406 17-58 (77)
No 1
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=37.04 E-value=4.4e+02 Score=28.59 Aligned_cols=151 Identities=13% Similarity=0.149 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHh----Cc-cccccceeeccCCcchhhhhHHHHHh-CCCCCCCCCCcccchHHHHHHhhhhh--
Q 014361 33 IRSLLWLSAIFRVILIVY----GE-WQDSHMEVRYTDVDYLVFSDAASLMA-SGDSPYKRTTYRYSPLLAFFLIPNSI-- 104 (426)
Q Consensus 33 ~~~~~~~a~~lRl~L~~~----~~-~~d~~~ev~yTdidy~v~~Dga~l~~-~G~sPY~~~ty~ytPLL~~ll~p~~~-- 104 (426)
...+++.|+.+|+.-... ++ ..|+ |+-++-.|=...-++++-.. ++.+|.+.+.+. |++.++......
T Consensus 20 ~~~~~~~sl~~R~~~~~w~~~~~~f~~~~--~~~~~~~D~yy~~r~ar~~l~~~~~p~~~~p~g--~~~~~l~a~l~~i~ 95 (724)
T 3rce_A 20 ILIAFAFSVLCRLYWVAWASEFYEFFFND--QLMITTNDGYAFAEGARDMIAGFHQPNDLSYFG--SSLSTLTYWLYSIL 95 (724)
T ss_dssp HHHHHHHHHHHHTHHHHHHSSCGGGEETT--EECCSCHHHHHHHHHHHHHHHSCCCTTSCCCTT--CHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhHHhhccCcceEECC--EEeeccCCHHHHHHHHHHHHhcCCCCCCCCCCc--chHHHHHHHHHHHc
Confidence 335677788899874322 11 1122 33334444444444555444 455676555443 344333221110
Q ss_pred -----hhhhHHHHHHHHHHHHHHHHHHHHHhhCCCCccchhHHHHHHhhchHHHHhhccC--CchHHHHHHHHHHHHHHH
Q 014361 105 -----IHRSWGKFLFSASDLLVGVFIHSILKLRKVPEDLCMYSAVVWLFNPFTFTIGTRG--NCEPIVCAMILWIIICLL 177 (426)
Q Consensus 105 -----~~~~~~kllf~~~Dl~~a~ll~~i~~~~~~~~~~~~~~~~lyLfNPl~I~~st~g--s~e~~~~~lvl~~L~~~~ 177 (426)
..-.+...+|...-++..+++. ++.+ .++.....+.+-.+.|--+.-+..| .+|++..++.+.++|++.
T Consensus 96 g~sl~~v~~~lp~ifg~L~vi~~yll~---~el~-~~~aGl~AAll~ai~P~~i~RS~aG~~D~e~l~i~~~ll~~~~~i 171 (724)
T 3rce_A 96 PFSFESIILYMSTFFASLIVVPIILIA---REYK-LTTYGFIAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLILLTFI 171 (724)
T ss_dssp SSCHHHHHHHHHHHHGGGGHHHHHHHH---HHTT-CHHHHHHHHHHHTTSHHHHHTSSTTCCSGGGGTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHc-CchHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHH
Confidence 0112334444444444444443 3322 1223344566789999877777766 778888888777777765
Q ss_pred h----CCh---HHHHHHHHHH
Q 014361 178 K----GNV---LQAAFWYGLV 191 (426)
Q Consensus 178 ~----~~~---~lAav~lgla 191 (426)
+ ++. ++||+++|+.
T Consensus 172 ~alk~~~~~~~~lagl~~~ly 192 (724)
T 3rce_A 172 RLTINKDIFTLLLSPIFIMIY 192 (724)
T ss_dssp HHHHHCCTHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 2 332 4666666544
No 2
>2k37_A Chlorosome protein A; bacteriochlorophyll, chlorophyll, chromophore, electron transport, magnesium, metal-binding, photosynthesis, transport; NMR {Chlorobium tepidum}
Probab=7.00 E-value=3.2e+02 Score=20.07 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhhcCCchh
Q 014361 360 GAQLHWLMWGYLLEFKGKNVF 380 (426)
Q Consensus 360 ~~q~~WL~~aY~lEf~G~~~f 380 (426)
..|++|-..+.++|-.|+.+-
T Consensus 21 m~dGHW~~vg~~le~~gk~t~ 41 (59)
T 2k37_A 21 MVEGHWETVGMLFDSLGKGTM 41 (59)
T ss_dssp HHHHHHHHHHHHTGGGTTTHH
T ss_pred eeccchHHHHHHHHHHHHHHH
Confidence 458999999999999998764
No 3
>2liy_A Epidermal patterning factor-like protein 9; plant peptide hormone, EPFL family, stomatal density, positi regulator, hormone; NMR {Arabidopsis thaliana}
Probab=4.60 E-value=1e+02 Score=21.26 Aligned_cols=16 Identities=38% Similarity=0.447 Sum_probs=13.2
Q ss_pred CCCCCCCCCCCCCCCc
Q 014361 5 HFCDAEPAPAFSNLPS 20 (426)
Q Consensus 5 ~~~~~~~~~~~~~~~~ 20 (426)
+-|.+||.|-|.|=|-
T Consensus 18 ~~C~aeqvPvd~~dP~ 33 (45)
T 2liy_A 18 YKCRAEQVPVEGNDPI 33 (45)
T ss_dssp SEEEEEEEESSCSSSC
T ss_pred cccceeeccccCCCcc
Confidence 5689999999988774
No 4
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=4.59 E-value=6.6e+02 Score=23.95 Aligned_cols=46 Identities=15% Similarity=0.173 Sum_probs=25.5
Q ss_pred HhhhcCCc--------hhHHHHHHHH-HHHHHHHHHHHHHHhhcCCCccccccCCC
Q 014361 371 LLEFKGKN--------VFLQLWLAGL-LFLAANTFVLIMITCRHTYSPVFQRLGHP 417 (426)
Q Consensus 371 ~lEf~G~~--------~f~~~w~asl-~f~~~nv~ll~~~i~~~~~~~~~~~~~~~ 417 (426)
--||.|+. .|..++-+.| .+|++-++++-+-++++.+ ....+.++|
T Consensus 26 t~~~lGRT~~sW~~IllFYliFY~~LaglFa~~m~v~l~Tld~~~P-kyqd~~~~P 80 (290)
T 3ixz_B 26 TGQMLGRTLSRWVWISLYYVAFYVVMSGIFALCIYVLMRTIDPYTP-DYQDQLKSP 80 (290)
T ss_pred CCceeCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-CcccccCCC
Confidence 34666654 2333333333 5667777777777776654 233456666
No 5
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=4.32 E-value=2.3e+02 Score=17.31 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=9.4
Q ss_pred CCCCCCcccchHH
Q 014361 83 PYKRTTYRYSPLL 95 (426)
Q Consensus 83 PY~~~ty~ytPLL 95 (426)
||.|..-|+-||=
T Consensus 2 pyagplerq~plk 14 (26)
T 2f8e_A 2 PYAGPLERQRPLK 14 (26)
T ss_pred CcCCchhhcCcce
Confidence 7777777777763
No 6
>2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa}
Probab=3.29 E-value=3.3e+02 Score=16.32 Aligned_cols=8 Identities=38% Similarity=0.509 Sum_probs=6.1
Q ss_pred ccccchhH
Q 014361 322 KVVTAQYF 329 (426)
Q Consensus 322 KV~TsQYF 329 (426)
.|.|||+.
T Consensus 6 svftsqdy 13 (26)
T 2xl1_A 6 SVFTSQDY 13 (26)
T ss_pred ceeecHHH
Confidence 57888875
No 7
>3dcg_E Virion infectivity factor; HIV, VIF, AIDS, HOST-virus interaction, membrane, phosphoPro RNA-binding, UBL conjugation pathway; 2.40A {Human immunodeficiency virus type 1}
Probab=2.97 E-value=2.7e+02 Score=18.81 Aligned_cols=19 Identities=47% Similarity=0.587 Sum_probs=14.2
Q ss_pred hcccccchhHHHHHHhhhhhccc
Q 014361 320 FNKVVTAQYFVWFFCLLPLILPW 342 (426)
Q Consensus 320 fNKV~TsQYFlW~l~LlPL~~p~ 342 (426)
-|||.|-|| +.|-.++-|.
T Consensus 2 HnkVGsLQy----LAL~alv~pk 20 (39)
T 3dcg_E 2 HNKVGSLQY----LALAALIKPK 20 (39)
T ss_pred CcchhHHHH----HHHHHHhccC
Confidence 489999995 5677777664
No 8
>2k3u_B C5AR(P7-28S) peptide, chemotaxis inhibitory protein; chemotaxis inhibitory protein (chips), sulfated tyrosine; HET: TYS; NMR {Staphylococcus aureus subsp}
Probab=2.64 E-value=4.5e+02 Score=15.74 Aligned_cols=16 Identities=38% Similarity=0.879 Sum_probs=9.1
Q ss_pred hCcccc-ccceeeccCCc
Q 014361 50 YGEWQD-SHMEVRYTDVD 66 (426)
Q Consensus 50 ~~~~~d-~~~ev~yTdid 66 (426)
||.+.| +..++. ||+|
T Consensus 6 yghyddkdtldln-tpvd 22 (26)
T 2k3u_B 6 YGHYDDKDTLDLN-TPVD 22 (26)
T ss_dssp CCEECSSSCCBTT-CCCC
T ss_pred ccccCCccccccC-Cccc
Confidence 455555 345666 7765
No 9
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=2.53 E-value=1.9e+03 Score=16.53 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=18.2
Q ss_pred CCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 014361 15 FSNLPSVSLSQLAMISINIRSLLWLSAIFRVILIVY 50 (426)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~lRl~L~~~ 50 (426)
-+++|.|+|-+-.-.-.-....+..+.++=.+...|
T Consensus 23 ~~~lPkVSYikAiDvw~~~C~~FVF~aLlEya~V~y 58 (76)
T 1vry_A 23 RASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNF 58 (76)
T ss_dssp TTCCCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999433322222233444444445444443
No 10
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=2.34 E-value=2e+03 Score=16.56 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHH-HHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014361 354 CILVWIGAQLHWLM-WGYLLEFKGKNVFLQLWLAGLLFLAANTFVLIMITCRHT 406 (426)
Q Consensus 354 ~l~~W~~~q~~WL~-~aY~lEf~G~~~f~~~w~asl~f~~~nv~ll~~~i~~~~ 406 (426)
-+-+|.+.|.+|-. +|= +.+..+.|++.-.+.+++++-+.+
T Consensus 17 rLr~~i~~qMlkGAg~AA------------v~f~~~~~~lv~l~~iG~~LPE~S 58 (77)
T 2dw3_A 17 NLRLWVAFQMMKGAGWAG------------GVFFGTLLLIGFFRVVGRMLPIQE 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHCTTTTC
T ss_pred hHHHHHHHHHHhcccHHH------------HHHHHHHHHHHHHHHHHHhCchhc
Confidence 47789999988865 221 234456667777788888887664
Done!