Query 014361
Match_columns 426
No_of_seqs 190 out of 523
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 10:11:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014361.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014361hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rzhh2 f.23.10.1 (H:11-35) Ph 5.0 2.2E+02 0.016 15.9 2.2 9 362-370 5-13 (26)
2 d1bd8a_ d.211.1.1 (A:) Cell cy 3.9 2.7E+02 0.019 20.4 2.9 30 71-100 114-143 (156)
3 d2j8xa1 c.18.1.1 (A:26-255) Ur 3.7 1.1E+02 0.008 26.3 0.2 31 50-87 40-71 (230)
4 d1pb5a_ g.65.1.1 (A:) Neurogen 3.6 1.4E+02 0.01 18.0 0.6 8 320-327 14-21 (35)
5 d1d2zb_ a.77.1.2 (B:) Tube dea 3.2 1E+02 0.0076 24.8 -0.4 27 57-83 61-87 (150)
6 d2hxma1 c.18.1.1 (A:82-304) Ur 2.9 1.4E+02 0.01 25.4 0.1 31 50-87 38-69 (223)
7 d1laue_ c.18.1.1 (E:) Uracil-D 2.7 1.6E+02 0.011 25.2 0.1 30 50-86 46-76 (228)
8 d1pjqa3 e.37.1.1 (A:114-215) S 2.6 1.2E+02 0.0087 22.3 -0.7 17 149-165 7-23 (102)
9 d1ppjc1 f.32.1.1 (C:261-379) M 2.5 1.8E+02 0.013 22.2 0.3 20 321-340 91-110 (119)
10 d1ihba_ d.211.1.1 (A:) p18ink4 2.4 3.8E+02 0.028 19.0 2.2 23 75-97 19-41 (156)
No 1
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.01 E-value=2.2e+02 Score=15.92 Aligned_cols=9 Identities=11% Similarity=0.497 Sum_probs=4.8
Q ss_pred HHHHHHHHH
Q 014361 362 QLHWLMWGY 370 (426)
Q Consensus 362 q~~WL~~aY 370 (426)
-++|++|++
T Consensus 5 laiw~fw~f 13 (26)
T d1rzhh2 5 LAIYSFWIF 13 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345666544
No 2
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.91 E-value=2.7e+02 Score=20.36 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=24.0
Q ss_pred hhHHHHHhCCCCCCCCCCcccchHHHHHHh
Q 014361 71 SDAASLMASGDSPYKRTTYRYSPLLAFFLI 100 (426)
Q Consensus 71 ~Dga~l~~~G~sPY~~~ty~ytPLL~~ll~ 100 (426)
.|.++++.+|.|+...+...+|||-.....
T Consensus 114 ~~i~~~L~~~~~~~~~d~~G~TpL~~A~~~ 143 (156)
T d1bd8a_ 114 TAVVSFLAAESDLHRRDARGLTPLELALQR 143 (156)
T ss_dssp HHHHHHHHTTSCTTCCCTTSCCHHHHHHHS
T ss_pred ccccccccccccccccCCCCCCHHHHHHHc
Confidence 466678889999999988999998876543
No 3
>d2j8xa1 c.18.1.1 (A:26-255) Uracil-DNA glycosylase {Epstein-Barr virus [TaxId: 10376]}
Probab=3.70 E-value=1.1e+02 Score=26.30 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=17.9
Q ss_pred hCccccccceeeccCC-cchhhhhHHHHHhCCCCCCCCC
Q 014361 50 YGEWQDSHMEVRYTDV-DYLVFSDAASLMASGDSPYKRT 87 (426)
Q Consensus 50 ~~~~~d~~~ev~yTdi-dy~v~~Dga~l~~~G~sPY~~~ 87 (426)
||.-.+-.-.+++||. |-||+ --|+|||-++
T Consensus 40 ~P~~~~iF~af~~~~~~~vKVV-------IlGQDPY~~~ 71 (230)
T d2j8xa1 40 YPEEDMCMAWARFCDPSDIKVV-------ILGQDPYHGG 71 (230)
T ss_dssp ESCTTTTTGGGSSSCGGGCCEE-------EEECSCCSSS
T ss_pred CCCHHHHHHHHHcCCHhHeEEE-------EEeccCCCCC
Confidence 4554332234556776 55544 3689999763
No 4
>d1pb5a_ g.65.1.1 (A:) Neurogenic locus notch homolog protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.57 E-value=1.4e+02 Score=18.01 Aligned_cols=8 Identities=50% Similarity=0.343 Sum_probs=5.7
Q ss_pred hcccccch
Q 014361 320 FNKVVTAQ 327 (426)
Q Consensus 320 fNKV~TsQ 327 (426)
=||+|.+|
T Consensus 14 gNkiC~~~ 21 (35)
T d1pb5a_ 14 GNKVCSLQ 21 (35)
T ss_dssp TSSSCCTT
T ss_pred CCcchhhh
Confidence 47777776
No 5
>d1d2zb_ a.77.1.2 (B:) Tube death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=3.19 E-value=1e+02 Score=24.79 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.6
Q ss_pred cceeeccCCcchhhhhHHHHHhCCCCC
Q 014361 57 HMEVRYTDVDYLVFSDAASLMASGDSP 83 (426)
Q Consensus 57 ~~ev~yTdidy~v~~Dga~l~~~G~sP 83 (426)
..+.+||..|.+++...+.++..|.||
T Consensus 61 n~~~kY~~~hi~~ie~~a~~~~~~~S~ 87 (150)
T d1d2zb_ 61 KKGFKYTAQDVFQIDEAANRLPPDQSK 87 (150)
T ss_dssp GGCBSSCHHHHHHHHHHHHHSCTTCCH
T ss_pred CCCccccHHHHHHHHHHHhhccCCCCh
Confidence 567889999999998888888999997
No 6
>d2hxma1 c.18.1.1 (A:82-304) Uracil-DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.94 E-value=1.4e+02 Score=25.43 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=19.1
Q ss_pred hCccccccceeeccCC-cchhhhhHHHHHhCCCCCCCCC
Q 014361 50 YGEWQDSHMEVRYTDV-DYLVFSDAASLMASGDSPYKRT 87 (426)
Q Consensus 50 ~~~~~d~~~ev~yTdi-dy~v~~Dga~l~~~G~sPY~~~ 87 (426)
||.-.+-.-.+++||. |-||+- -|+|||-+.
T Consensus 38 ~P~~~~IFraf~~~p~~~vKVVI-------lGQDPY~~~ 69 (223)
T d2hxma1 38 YPPPHQVFTWTQMCDIKDVKVVI-------LGQDPYHGP 69 (223)
T ss_dssp ESCGGGTTGGGTSSCGGGCCEEE-------EECSCCCST
T ss_pred cCChHHHHHHHHcCCHhHceEEE-------EeccCCccC
Confidence 5665443334556777 656554 579999853
No 7
>d1laue_ c.18.1.1 (E:) Uracil-DNA glycosylase {Herpes simplex virus type 1 [TaxId: 10298]}
Probab=2.68 E-value=1.6e+02 Score=25.17 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=18.0
Q ss_pred hCccccccceeeccCC-cchhhhhHHHHHhCCCCCCCC
Q 014361 50 YGEWQDSHMEVRYTDV-DYLVFSDAASLMASGDSPYKR 86 (426)
Q Consensus 50 ~~~~~d~~~ev~yTdi-dy~v~~Dga~l~~~G~sPY~~ 86 (426)
||.-.+-.-.+++||. |-||+- -|+|||-+
T Consensus 46 ~P~~~~IF~af~~~~~~~vKVVI-------lGQDPYh~ 76 (228)
T d1laue_ 46 LPPREDVFSWTRYCTPDEVRVVI-------IGQDPYHH 76 (228)
T ss_dssp ESCGGGTTGGGTSSCGGGCCEEE-------EECSCCCS
T ss_pred ECccHHHHHHHHcCChhhceEEE-------EeecCCCc
Confidence 5664443334556676 555544 68999964
No 8
>d1pjqa3 e.37.1.1 (A:114-215) Siroheme synthase CysG, domains 2 and 3 {Salmonella typhimurium [TaxId: 90371]}
Probab=2.58 E-value=1.2e+02 Score=22.27 Aligned_cols=17 Identities=12% Similarity=0.440 Sum_probs=12.8
Q ss_pred chHHHHhhccCCchHHH
Q 014361 149 NPFTFTIGTRGNCEPIV 165 (426)
Q Consensus 149 NPl~I~~st~gs~e~~~ 165 (426)
.|++|.+||+|++=.+.
T Consensus 7 g~l~iAISTgG~sP~la 23 (102)
T d1pjqa3 7 SPLMVAVSSGGTSPVLA 23 (102)
T ss_dssp TTEEEEEECTTSCHHHH
T ss_pred CCeEEEEeCCCcChHHH
Confidence 48888999988776554
No 9
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.55 E-value=1.8e+02 Score=22.19 Aligned_cols=20 Identities=20% Similarity=0.511 Sum_probs=15.9
Q ss_pred cccccchhHHHHHHhhhhhc
Q 014361 321 NKVVTAQYFVWFFCLLPLIL 340 (426)
Q Consensus 321 NKV~TsQYFlW~l~LlPL~~ 340 (426)
.+++|.=||.+++.++|+.-
T Consensus 91 gqi~tv~YF~~flillP~~~ 110 (119)
T d1ppjc1 91 GQLASVLYFLLILVLMPTAG 110 (119)
T ss_dssp HHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36778889999999998764
No 10
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.37 E-value=3.8e+02 Score=19.00 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=18.6
Q ss_pred HHHhCCCCCCCCCCcccchHHHH
Q 014361 75 SLMASGDSPYKRTTYRYSPLLAF 97 (426)
Q Consensus 75 ~l~~~G~sPY~~~ty~ytPLL~~ 97 (426)
.++++|.||-..+..-.|||-+.
T Consensus 19 ~Ll~~g~d~n~~d~~g~TpL~~A 41 (156)
T d1ihba_ 19 SLLQNNVNVNAQNGFGRTALQVM 41 (156)
T ss_dssp HHTTSCCCTTCCCTTSCCHHHHC
T ss_pred HHHHCCCCcCccCCccccccccc
Confidence 46789999988888889998653
Done!