Citrus Sinensis ID: 014364

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420------
MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHGRGKSHGSVHELHDQPVVIQNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKEIVRNPEFSGKITFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
ccHHHHHHHHHcccccccccccEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccEEEEccccccHHHHHHHHHcccccccccccEEccccccccccEEEEEEEEEcccccccccccccccEEcccccEEEEEEEccccccEEEEEEccccccccccccEEEEEEccEEccEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccEEEcccccEEEEEEccEEEEEccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccHHHHHHHHHHccccccccc
ccHHHHHHHHHccccccccccEEEEcccccccccccccccccccccHHHcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEccEEcccccccccEEEEEEEEccccccEEEEcccccHHccccccEEEEEEEEEccccEEEEEEccHHHHccccccccEEEEEcccccEEEEEccccccccccccccccccEEcccccccccccccEEEEEEEEccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccEEEccccEEEEEEccEEEEcEccEEEEEcccccccccccccccccccccccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHcccccc
MSFRSIVRDVRDgfgslsrrsfevrlpghhgrgkshgsvhelhdqpvviqnsrwaglppELLRDVIKRLEasestwpaRKHVVACAAVCRSWREMCKEIVrnpefsgkitfpvslkqpgprdgtiqCFIKrdksnltyHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISmdadnisrsssTYIGKLrsnflgtkfiiydtqppynsaqlsppgrsrrfyskkvspkvptgsynIAQVSYELNvlgtrgprrmhctmhsipasalepggsvpgqaelnprsleDSFRNFsksidvstefsssrfsdivgprdeedegkdrplilrnkaprWHEQLQCWCLNFRGRVTVASVKNFQLIaatqpaagaptpsqppppppsdhdkiILQFGkvgkdmftmdyryplSAFQAFAICLSSfdtklace
msfrsivrdvrdgfgslsrrsfevrlpghhgrgkshgsvhELHDQPVVIQNSRWAGLPPELLRDVIKRLEasestwparkhVVACAAVCRSWREMCKEIVrnpefsgkitfpvslkqpgprdGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFllsakrtrrttcteyvismdadnisrssSTYIGKLRSNFLGTKFIIYDTqppynsaqlsppgrsrrfyskkvspkvptgsyniaQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFRNFSKsidvstefsssrfsdivgprdeedegkdrpLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHGRGKSHGSVHELHDQPVVIQNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKEIVRNPEFSGKITFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIaatqpaagaptpsqppppppsDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
********************************************QPVVIQNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKEIVRNPEFSGKITFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDT*****************************GSYNIAQVSYELNVLGTRG*************************************************************************ILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAA***********************IILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTK****
*SFRSIVRDVRD********************************************LPPELLRDV*********************************************FPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYN*****************************AQVSYELNVLGTRGPRRMHCTMHSIPA********************************************************DRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAA*******************DHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
MSFRSIVRDVRDGFGSLSRRSFEVRLPG***********HELHDQPVVIQNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKEIVRNPEFSGKITFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFRNFSKSIDV**********************KDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQ****************SDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
*************FGSLSRRSFEVRLP******************P**IQNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKEIVRNPEFSGKITFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPP*****************K*VSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASAL*****************************************************DRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAT*******************HDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLAC*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHGRGKSHGSVHELHDQPVVIQNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKEIVRNPEFSGKITFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query426 2.2.26 [Sep-21-2011]
Q75HX5445 Tubby-like F-box protein yes no 0.995 0.952 0.749 0.0
Q2QXB2445 Tubby-like F-box protein no no 0.997 0.955 0.751 0.0
Q7XSV4462 Tubby-like F-box protein no no 1.0 0.922 0.696 1e-178
Q9ZP59455 Tubby-like F-box protein yes no 1.0 0.936 0.714 1e-177
Q53PP5440 Tubby-like F-box protein no no 0.997 0.965 0.723 1e-175
Q944S3429 Tubby-like F-box protein no no 0.974 0.967 0.697 1e-173
Q8LJA9448 Tubby-like F-box protein no no 0.992 0.944 0.694 1e-172
Q9FRH7445 Tubby-like F-box protein no no 0.997 0.955 0.708 1e-171
Q69U54451 Tubby-like F-box protein no no 0.997 0.942 0.694 1e-170
Q8VY21406 Tubby-like F-box protein no no 0.950 0.997 0.555 1e-134
>sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1 Back     alignment and function desciption
 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/447 (74%), Positives = 369/447 (82%), Gaps = 23/447 (5%)

Query: 1   MSFRSIVRDVRDGFGSLSRRSFEVRLPG-----HHGRGKSHGSVHELHDQPVVIQNSRWA 55
           MSFRSIVRDVRD FGSLSRRSFEV L G      H RGKS  +VHEL D  ++IQ SRWA
Sbjct: 1   MSFRSIVRDVRDSFGSLSRRSFEVTLAGLSGLTGHHRGKSQSTVHELCDADLIIQESRWA 60

Query: 56  GLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKEIVRNPEFSGKITFPVSL 115
            LPPELLRDVI+RLEASESTWP+RK VV+CAAVC++WREMCKEIV +PEF GK+TFP+SL
Sbjct: 61  SLPPELLRDVIRRLEASESTWPSRKDVVSCAAVCKAWREMCKEIVLSPEFCGKLTFPLSL 120

Query: 116 KQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMD 175
           KQPGPRDG IQCFIKRDKS  TYHL+LCLS A+L ++GKFLLSAKR R+TTCTEYVISMD
Sbjct: 121 KQPGPRDGMIQCFIKRDKSKSTYHLYLCLSTAVLADSGKFLLSAKRHRKTTCTEYVISMD 180

Query: 176 ADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGR-SRRFYSKKVSPKVPTG 234
           ADNISRSSSTYIGKLRSNFLGTKFIIYDTQP YN A + P GR SRRF SKKVSPK+P+G
Sbjct: 181 ADNISRSSSTYIGKLRSNFLGTKFIIYDTQPSYNGAVIPPVGRSSRRFNSKKVSPKMPSG 240

Query: 235 SYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAE-LNPRSLEDSFR--- 290
           SYNIAQV+YELNVLGTRGPRRMHC MHSIPAS++EPGG VPGQ E + PR+ E+SFR   
Sbjct: 241 SYNIAQVTYELNVLGTRGPRRMHCVMHSIPASSVEPGGIVPGQPEQIVPRAFEESFRSTT 300

Query: 291 NFSKS--IDVST------EFSSSRFSDIVGPR---DEEDEGKDRPLILRNKAPRWHEQLQ 339
           +FSKS  +D S       +FSS+RFSDI G     DEE + K+RPL+LRNKAPRWHEQLQ
Sbjct: 301 SFSKSSIMDRSMDFSSSRDFSSARFSDIAGGTINGDEEGQNKERPLVLRNKAPRWHEQLQ 360

Query: 340 CWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFT 399
           CWCLNFRGRVT+ASVKNFQLIAA             P PP  + DKIILQFGKV KDMFT
Sbjct: 361 CWCLNFRGRVTIASVKNFQLIAAPAQPPAGAPTPSQPAPP--EQDKIILQFGKVAKDMFT 418

Query: 400 MDYRYPLSAFQAFAICLSSFDTKLACE 426
           MDYRYPLSAFQAFAICLSSFDTKLACE
Sbjct: 419 MDYRYPLSAFQAFAICLSSFDTKLACE 445

Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q2QXB2|TLP14_ORYSJ Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1 Back     alignment and function description
>sp|Q7XSV4|TLP7_ORYSJ Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZP59|TLP1_ARATH Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1 Back     alignment and function description
>sp|Q53PP5|TLP13_ORYSJ Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica GN=TULP13 PE=2 SV=1 Back     alignment and function description
>sp|Q944S3|TLP5_ARATH Tubby-like F-box protein 5 OS=Arabidopsis thaliana GN=TULP5 PE=2 SV=1 Back     alignment and function description
>sp|Q8LJA9|TLP3_ORYSJ Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1 Back     alignment and function description
>sp|Q9FRH7|TLP10_ARATH Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1 Back     alignment and function description
>sp|Q69U54|TLP12_ORYSJ Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica GN=TULP12 PE=2 SV=1 Back     alignment and function description
>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query426
225460668425 PREDICTED: tubby-like F-box protein 8-li 0.990 0.992 0.930 0.0
224082450423 f-box family protein [Populus trichocarp 0.988 0.995 0.939 0.0
118484667423 unknown [Populus trichocarpa] 0.988 0.995 0.936 0.0
255566602424 phosphoric diester hydrolase, putative [ 0.990 0.995 0.932 0.0
224066676424 f-box family protein [Populus trichocarp 0.990 0.995 0.913 0.0
331687440424 F-box protein [Gossypium hirsutum] 0.990 0.995 0.913 0.0
224082454424 predicted protein [Populus trichocarpa] 0.990 0.995 0.901 0.0
449446265430 PREDICTED: tubby-like F-box protein 14-l 0.997 0.988 0.860 0.0
302399095426 TLP domain class transcription factor [M 0.995 0.995 0.908 0.0
225447793424 PREDICTED: tubby-like F-box protein 8-li 0.988 0.992 0.864 0.0
>gi|225460668|ref|XP_002267914.1| PREDICTED: tubby-like F-box protein 8-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  819 bits (2116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/429 (93%), Positives = 415/429 (96%), Gaps = 7/429 (1%)

Query: 1   MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHGRGKSHGSVHELHDQPVVIQNSRWAGLPPE 60
           MSFRSIVRDVRDGFGSLSRRSF+VRLPGHH RGKSHGSVHEL DQP+V+QNSRWAGLPPE
Sbjct: 1   MSFRSIVRDVRDGFGSLSRRSFDVRLPGHH-RGKSHGSVHELQDQPLVVQNSRWAGLPPE 59

Query: 61  LLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKEIVRNPEFSGKITFPVSLKQPGP 120
           LLRDVIKRLEASESTWP+RKHVVACAAVCRSWREMCKEIV++PEFSGK+TFP+SLKQPGP
Sbjct: 60  LLRDVIKRLEASESTWPSRKHVVACAAVCRSWREMCKEIVKSPEFSGKLTFPISLKQPGP 119

Query: 121 RDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNIS 180
           RDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKR RRTTCTEYVISMDADNIS
Sbjct: 120 RDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRNRRTTCTEYVISMDADNIS 179

Query: 181 RSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGR-SRRFYSKKVSPKVPTGSYNIA 239
           RSSSTYIGKLRSNFLGTKFIIYDTQPPYN +QLSPPGR SRRFYSKKVSPKVPTGSYNIA
Sbjct: 180 RSSSTYIGKLRSNFLGTKFIIYDTQPPYNGSQLSPPGRTSRRFYSKKVSPKVPTGSYNIA 239

Query: 240 QVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFR--NFSKSID 297
           QV+YELNVLGTRGPRRMHCTMHSIPAS+LEPGG+VPGQAEL PR+LEDSFR  +FSKSID
Sbjct: 240 QVTYELNVLGTRGPRRMHCTMHSIPASSLEPGGTVPGQAELLPRNLEDSFRSISFSKSID 299

Query: 298 VSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNF 357
            STEFSSSRFSDI+GPRDEEDEGKDRPL+LRNK PRWHEQLQCWCLNFRGRVTVASVKNF
Sbjct: 300 NSTEFSSSRFSDIIGPRDEEDEGKDRPLVLRNKPPRWHEQLQCWCLNFRGRVTVASVKNF 359

Query: 358 QLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLS 417
           QLIAATQPAAGAPTPSQ   PP SDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLS
Sbjct: 360 QLIAATQPAAGAPTPSQ---PPASDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLS 416

Query: 418 SFDTKLACE 426
           SFDTKLACE
Sbjct: 417 SFDTKLACE 425

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224082450|ref|XP_002306697.1| f-box family protein [Populus trichocarpa] gi|222856146|gb|EEE93693.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118484667|gb|ABK94204.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255566602|ref|XP_002524285.1| phosphoric diester hydrolase, putative [Ricinus communis] gi|223536376|gb|EEF38025.1| phosphoric diester hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224066676|ref|XP_002302178.1| f-box family protein [Populus trichocarpa] gi|222843904|gb|EEE81451.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|331687440|gb|AED87506.1| F-box protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|224082454|ref|XP_002306698.1| predicted protein [Populus trichocarpa] gi|222856147|gb|EEE93694.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449446265|ref|XP_004140892.1| PREDICTED: tubby-like F-box protein 14-like [Cucumis sativus] gi|449494177|ref|XP_004159470.1| PREDICTED: tubby-like F-box protein 14-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|302399095|gb|ADL36842.1| TLP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|225447793|ref|XP_002266692.1| PREDICTED: tubby-like F-box protein 8-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query426
TAIR|locus:2025327455 TLP1 "AT1G76900" [Arabidopsis 0.758 0.709 0.722 1e-167
TAIR|locus:2032950445 TLP10 "AT1G25280" [Arabidopsis 0.997 0.955 0.704 4.1e-159
TAIR|locus:2194686429 TLP5 "AT1G43640" [Arabidopsis 0.978 0.972 0.678 8.5e-152
TAIR|locus:2062121394 TLP2 "AT2G18280" [Arabidopsis 0.603 0.652 0.538 1.5e-108
TAIR|locus:2036730413 TLP6 "AT1G47270" [Arabidopsis 0.563 0.581 0.552 9.4e-105
TAIR|locus:2180034389 TLP11 "AT5G18680" [Arabidopsis 0.575 0.629 0.492 9.7e-99
TAIR|locus:2009610379 TLP7 "AT1G53320" [Arabidopsis 0.596 0.670 0.455 5.6e-90
TAIR|locus:2081101380 TLP9 "AT3G06380" [Arabidopsis 0.734 0.823 0.509 4.1e-81
UNIPROTKB|E1BSR1465 TULP3 "Uncharacterized protein 0.415 0.380 0.296 1.6e-35
UNIPROTKB|E1B8A6508 TUB "Uncharacterized protein" 0.293 0.246 0.368 3.4e-35
TAIR|locus:2025327 TLP1 "AT1G76900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1215 (432.8 bits), Expect = 1.0e-167, Sum P(2) = 1.0e-167
 Identities = 247/342 (72%), Positives = 282/342 (82%)

Query:     1 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHGRG-KSHGSVHELHDQPVV--IQNSRWAGL 57
             MSFRSIVRDVRD  GSLSRRSF+ +L   +  G KS GSV + H++ +V  IQ + WA L
Sbjct:     1 MSFRSIVRDVRDSIGSLSRRSFDFKLSSLNKEGGKSRGSVQDSHEEQLVVTIQETPWANL 60

Query:    58 PPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKEIVRNPEFSGKITFPVSLKQ 117
             PPELLRDVIKRLE SES WPAR+HVVACA+VCRSWR+MCKEIV++PE SGKITFPVSLKQ
Sbjct:    61 PPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPVSLKQ 120

Query:   118 PGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDAD 177
             PGPRD T+QCFIKRDKSNLTYHL+LCLSPALLVENGKFLLSAKR RRTT TEYVISM AD
Sbjct:   121 PGPRDATMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRIRRTTYTEYVISMHAD 180

Query:   178 NISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNS---AQLSPPGRSRRFYSKKVSPKVPTG 234
              ISRSS+TYIGK+RSNFLGTKFIIYDTQP YNS     + P G SRRFYSK+VSPKVP+G
Sbjct:   181 TISRSSNTYIGKIRSNFLGTKFIIYDTQPAYNSNIARAVQPVGLSRRFYSKRVSPKVPSG 240

Query:   235 SYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELN-PRS-LEDSFRNF 292
             SY IAQVSYELNVLGTRGPRRMHC M+SIPAS+L  GG+VPGQ ++  PRS L++SFR+ 
Sbjct:   241 SYKIAQVSYELNVLGTRGPRRMHCAMNSIPASSLAEGGTVPGQPDIIVPRSILDESFRSI 300

Query:   293 SKS------IDVSTEFSSSRFSDIVGP--RDEE---DEGKDR 323
             + S       D S +FSS+RFSDI+GP   D+E   +EGK+R
Sbjct:   301 TSSSSRKITYDYSNDFSSARFSDILGPLSEDQEVVLEEGKER 342
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2032950 TLP10 "AT1G25280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194686 TLP5 "AT1G43640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062121 TLP2 "AT2G18280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036730 TLP6 "AT1G47270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180034 TLP11 "AT5G18680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009610 TLP7 "AT1G53320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081101 TLP9 "AT3G06380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BSR1 TULP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1B8A6 TUB "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q75HX5TLP8_ORYSJNo assigned EC number0.74940.99530.9528yesno
Q53PP5TLP13_ORYSJNo assigned EC number0.72330.99760.9659nono
Q2QXB2TLP14_ORYSJNo assigned EC number0.75110.99760.9550nono
Q9ZP59TLP1_ARATHNo assigned EC number0.71421.00.9362yesno
Q9FRH7TLP10_ARATHNo assigned EC number0.70850.99760.9550nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query426
pfam01167243 pfam01167, Tub, Tub family 1e-136
pfam1293747 pfam12937, F-box-like, F-box-like 1e-04
pfam0064648 pfam00646, F-box, F-box domain 0.001
>gnl|CDD|216339 pfam01167, Tub, Tub family Back     alignment and domain information 
 Score =  390 bits (1003), Expect = e-136
 Identities = 137/305 (44%), Positives = 170/305 (55%), Gaps = 64/305 (20%)

Query: 118 PGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENG--KFLLSAKRTRRTTCTEYVISMD 175
           P PR GT+QC I RDKS + Y LF      L  ENG  KFLL+A++ +R+  + Y+IS+D
Sbjct: 1   PAPRGGTVQCRITRDKSGMDYGLFPTYYLHLERENGKKKFLLAARKRKRSKTSNYLISLD 60

Query: 176 ADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGS 235
             ++SRS   YIGKLRSNFLGTKF ++D       A+L             V+PKV +G 
Sbjct: 61  PTDLSRSGDGYIGKLRSNFLGTKFTVFDNGVNPQKARL-------------VTPKVASGR 107

Query: 236 YNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFRNFSKS 295
             +A V YE NVLG RGPR+M   M  IP+S       VP Q   +  SL          
Sbjct: 108 QELAAVCYETNVLGFRGPRKMTVIMPGIPSSHER----VPIQPLNDQESLLS-------- 155

Query: 296 IDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVK 355
                                +++ K+  L+L NKAPRW++QLQ + LNF GRVT ASVK
Sbjct: 156 -------------------RWQNKNKESLLVLHNKAPRWNDQLQSYVLNFHGRVTQASVK 196

Query: 356 NFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAIC 415
           NFQ++                    SD D I+LQFG+V KDMFTMDYRYPLSAFQAFAIC
Sbjct: 197 NFQIVH------------------ASDPDYIVLQFGRVAKDMFTMDYRYPLSAFQAFAIC 238

Query: 416 LSSFD 420
           LSSFD
Sbjct: 239 LSSFD 243

Length = 243
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 426
KOG2502355 consensus Tub family proteins [General function pr 100.0
PF01167246 Tub: Tub family; InterPro: IPR000007 Tubby, an aut 100.0
KOG2503565 consensus Tubby superfamily protein TULP4 [General 99.75
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 97.58
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 97.47
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 96.62
smart0025641 FBOX A Receptor for Ubiquitination Targets. 96.57
PF12043346 DUF3527: Domain of unknown function (DUF3527); Int 96.46
KOG2997366 consensus F-box protein FBX9 [General function pre 94.87
>KOG2502 consensus Tub family proteins [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-129  Score=965.28  Aligned_cols=354  Identities=57%  Similarity=0.915  Sum_probs=307.1

Q ss_pred             CcchhhhhhhcccCCccccccceeccCCcCCCCcccCcccccCCcccccccCccCCCChHHHHHHHHHhhhcCCCCCCcc
Q 014364            1 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHGRGKSHGSVHELHDQPVVIQNSRWAGLPPELLRDVIKRLEASESTWPARK   80 (426)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~p~ell~~~~~r~e~se~~wp~r~   80 (426)
                      |+++++++++++..      +|+.+....+ ++. +..+++.. .+.....+.|++||||||+|+|+|+|++|+.||+|+
T Consensus         1 ~~~~~~~~~~~~~~------~~~~~~~~~~-~~~-~~~~~~~~-~~s~~~~~~~~~l~~~~L~d~~~r~eese~~wp~r~   71 (355)
T KOG2502|consen    1 MGEDGPVRDPEDKS------SFRAPQGSGT-KGP-EDKSEDSG-FPSPSDQSLWAALPPELLSDVLKRDEESEDTWPSRR   71 (355)
T ss_pred             CCccCccCCCCccc------chhccccccc-ccC-CCccCCcC-CccccccchhhcCCHhHHHHHhhhcccccccccccc
Confidence            88999999998877      4554443222 111 22233321 111112289999999999999999999999999999


Q ss_pred             ceeeecccchhHHHHHHHHhcCCcccccccccccccCCCCCCceEEEEEEEecCCceEEEEecccccccc-cCCeEEEEE
Q 014364           81 HVVACAAVCRSWREMCKEIVRNPEFSGKITFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLV-ENGKFLLSA  159 (426)
Q Consensus        81 ~vvaca~vc~~wr~~~~eiv~~pe~~g~~tfpisLkqPgPrd~~iQCfIkRdK~~~tY~LYL~l~~~~~~-e~gKFLLaA  159 (426)
                      +||+||+||+.||++++|||+.||.+|++|||++|+||||+|.++||+|+|||+|++|+||+++.++.+. |++||||||
T Consensus        72 ~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~kfLLaa  151 (355)
T KOG2502|consen   72 NVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNKKFLLAA  151 (355)
T ss_pred             ccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccceeeeee
Confidence            9999999999999999999999999999999999999999999999999999999999999999886553 679999999


Q ss_pred             EeeccCCceeEEEEecCCCcccCCCceeeEeeccceecEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCCCceeeE
Q 014364          160 KRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIA  239 (426)
Q Consensus       160 RK~rr~t~S~YiISld~~dlSr~S~~yVGKLRSNflGTkFtIYD~gpp~~~~~~~~~~rsrr~~sk~vsp~vp~~~~ela  239 (426)
                      ||+||+||+|||||+|++||||++++||||||||||||||||||+|...          +|+++      ++|+++|+||
T Consensus       152 rk~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~~----------~r~~~------~~~~~~~~la  215 (355)
T KOG2502|consen  152 RKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVNP----------SRRFN------KVPSGRQELA  215 (355)
T ss_pred             eeecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCCc----------ccccc------cCCcccceee
Confidence            9999999999999999999999999999999999999999999997422          23333      6899999999


Q ss_pred             EEEEEeeccccCCCceeEEeecCCCccccCCCCCCCCCcccCCCCcccccccCCcccccccccccCccccccCCCCCccc
Q 014364          240 QVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDE  319 (426)
Q Consensus       240 ~V~Ye~NVLg~rGPRrM~~im~~IP~s~~~~gg~~P~~~~~~~~~~~e~frs~s~~~d~~~~f~s~r~s~~~~~~~~~~~  319 (426)
                      +|+||+||||+||||||+|+|+.||.++  +||++|.|++.....  ..|+..                         ..
T Consensus       216 ~V~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~~--~l~r~~-------------------------~k  266 (355)
T KOG2502|consen  216 AVIYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHPS--LLFRSQ-------------------------NK  266 (355)
T ss_pred             EEEEeeccccccCCceeEEeccCCCCCC--CCCcccccccccccc--hhhhcc-------------------------cc
Confidence            9999999999999999999999999987  899999998732111  112211                         11


Q ss_pred             CCCCceEeecCCCcccccccceEeecCCeeeccccceeEEEeccCCCCCCCCCCCCCCCCCCCCCceEEEeeccCCCeeE
Q 014364          320 GKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFT  399 (426)
Q Consensus       320 ~~~~~lvL~nK~P~w~e~lq~~~LnF~GRVt~aSVKNFQLv~~~~p~~~~~~~~q~~~~~~~~~~~iiLQFGKv~kd~Ft  399 (426)
                      .++++++|+||.|+|||++||||||||||||+||||||||||+                  .++++|||||||||||+||
T Consensus       267 ~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~------------------~~p~~iiLQFGrV~kD~FT  328 (355)
T KOG2502|consen  267 DKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHA------------------LDPEYIILQFGRVGKDVFT  328 (355)
T ss_pred             CcccceEeecCCCccccccceEEEecCCeEEEeeecceEEecc------------------CCCCEEEEEeeeeccceee
Confidence            3689999999999999999999999999999999999999994                  3559999999999999999


Q ss_pred             EEccCCCCHHHHHHHHHHcCccccccC
Q 014364          400 MDYRYPLSAFQAFAICLSSFDTKLACE  426 (426)
Q Consensus       400 mD~ryPLS~~QAFaIcLssfdtKlACe  426 (426)
                      |||||||||||||||||||||||||||
T Consensus       329 mDYrYPlSa~QAFaIcLSSFdtKlaCe  355 (355)
T KOG2502|consen  329 MDYRYPLSAFQAFAICLSSFDTKLACE  355 (355)
T ss_pred             ecccCccHHHHHHHHHHHhccccccCC
Confidence            999999999999999999999999998

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function Back     alignment and domain information
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only] Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query426
1s31_A273 Crystal Structure Analysis Of The Human Tub Protein 3e-44
1c8z_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Leng 1e-43
1i7e_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Boun 3e-43
2fim_A276 Structure Of The C-Terminal Domain Of Human Tubby-L 3e-42
3c5n_A246 Structure Of Human Tulp1 In Complex With Ip3 Length 5e-39
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273 Back     alignment and structure 
Iteration: 1

 Score =  175 bits (444), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/315 (35%), Positives = 162/315 (51%), Gaps = 70/315 (22%)
Query: 117 QPGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGK--FLLSAKRTRRTTCTEYVISM 174
           +P P+  TI+C I RDK  +   +F      L  E+GK  FLL+ ++ +++  + Y+IS+
Sbjct: 24  RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISV 83
Query: 175 DADNISRSSSTYIGKLRSNFLGTKFIIYD--TQPPYNSAQLSPPGRSRRFYSKKVSPKVP 232
           D  ++SR   +YIGKLRSN +GTKF +YD    P   S+     G  R+           
Sbjct: 84  DPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQ----------- 132
Query: 233 TGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPG-GSVPGQAELNPRSLEDSFRN 291
                +A V YE NVLG +GPR+M         S + PG   V  +  + PR+  ++   
Sbjct: 133 ----ELAAVCYETNVLGFKGPRKM---------SVIVPGMNMVHERVSIRPRNEHETLL- 178
Query: 292 FSKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTV 351
                        +R+         +++  +  + L+NK P W++  Q + LNF GRVT 
Sbjct: 179 -------------ARW---------QNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQ 216
Query: 352 ASVKNFQLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQA 411
           ASVKNFQ+I                     D D I++QFG+V +D+FTMDY YPL A QA
Sbjct: 217 ASVKNFQIIHGN------------------DPDYIVMQFGRVAEDVFTMDYNYPLCALQA 258
Query: 412 FAICLSSFDTKLACE 426
           FAI LSSFD+KLACE
Sbjct: 259 FAIALSSFDSKLACE 273
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265 Back     alignment and structure
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265 Back     alignment and structure
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276 Back     alignment and structure
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query426
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 6e-97
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 1e-93
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 9e-04
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276 Back     alignment and structure
 Score =  290 bits (744), Expect = 6e-97
 Identities = 103/312 (33%), Positives = 147/312 (47%), Gaps = 64/312 (20%)

Query: 115 LKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISM 174
           + +P P+  T++C + RDK  +   ++      L  E   FLL+ ++ +R+    Y+IS+
Sbjct: 29  VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 88

Query: 175 DADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTG 234
           D  N+SR    +IGKLRSN LG +F ++D                     +  S  V + 
Sbjct: 89  DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQN---------------PQRGYSTNVASL 133

Query: 235 SYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFRNFSK 294
              +A V YE NVLG RGPRRM   +  + A           +  + PR+  D      +
Sbjct: 134 RQELAAVIYETNVLGFRGPRRMTVIIPGMSAEN--------ERVPIRPRNASDGLLVRWQ 185

Query: 295 SIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASV 354
           +                       +  +  + L NK P W++    + LNF+GRVT ASV
Sbjct: 186 N-----------------------KTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASV 222

Query: 355 KNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAI 414
           KNFQ++                     D D I+LQFG+V +D FT+DYRYPL A QAFAI
Sbjct: 223 KNFQIVH------------------ADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAI 264

Query: 415 CLSSFDTKLACE 426
            LSSFD KLACE
Sbjct: 265 ALSSFDGKLACE 276
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query426
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 100.0
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 100.0
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 97.94
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 96.41
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 96.07
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 95.28
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 93.63
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 93.31
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 91.53
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 90.01
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 87.8
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Back     alignment and structure
Probab=100.00  E-value=2e-90  Score=677.04  Aligned_cols=244  Identities=43%  Similarity=0.755  Sum_probs=187.4

Q ss_pred             ccccCCCCCCceEEEEEEEecCCc------eEEEEecccccccccCCeEEEEEEeeccCCceeEEEEecCCCcccCCCce
Q 014364          113 VSLKQPGPRDGTIQCFIKRDKSNL------TYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTY  186 (426)
Q Consensus       113 isLkqPgPrd~~iQCfIkRdK~~~------tY~LYL~l~~~~~~e~gKFLLaARK~rr~t~S~YiISld~~dlSr~S~~y  186 (426)
                      -.|+||+|+|++|||+|+|||+|+      +|||||+      .|+++|||||||+|++++|||+||+|++||||++++|
T Consensus        27 ~fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~------~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~y  100 (276)
T 2fim_A           27 EFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD------TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENF  100 (276)
T ss_dssp             TGGGSCCCTTCCEEEEEEEEC-------CCEEEEEEC------SSSCEEEEEEEECTTCSSCEEEEESCTTC------CE
T ss_pred             HHhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe------CCCCEEEEEEEeccCCCCceEEEEecchhcccCCceE
Confidence            359999999999999999999984      9999985      4678999999999999999999999999999999999


Q ss_pred             eeEeeccceecEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCCCceeeEEEEEEeeccccCCCceeEEeecCCCcc
Q 014364          187 IGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPAS  266 (426)
Q Consensus       187 VGKLRSNflGTkFtIYD~gpp~~~~~~~~~~rsrr~~sk~vsp~vp~~~~ela~V~Ye~NVLg~rGPRrM~~im~~IP~s  266 (426)
                      ||||||||+||+|+|||+|++++.               ..+|+++.+++|||+|+||+||||++|||+|+|+|   |.+
T Consensus       101 vGKLrSNflGtkF~iyD~G~~p~~---------------~~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~i---P~~  162 (276)
T 2fim_A          101 IGKLRSNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVII---PGM  162 (276)
T ss_dssp             EEEEEECSSSSEEEEECSSBCGGG---------------CTTSCGGGBCCEEEEEEEC---------CCEEEEE---ECB
T ss_pred             EEEEEEccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEe---cCc
Confidence            999999999999999999975532               23566778899999999999999999999999996   443


Q ss_pred             ccCCCCCCCCCcccCCCCcccccccCCcccccccccccCccccccCCCCCcccCCCCceEeecCCCcccccccceEeecC
Q 014364          267 ALEPGGSVPGQAELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFR  346 (426)
Q Consensus       267 ~~~~gg~~P~~~~~~~~~~~e~frs~s~~~d~~~~f~s~r~s~~~~~~~~~~~~~~~~lvL~nK~P~w~e~lq~~~LnF~  346 (426)
                      . +.|+.+|.++.    ..++++-         ..|.              +...+++++|+||+|+|||++|||||||+
T Consensus       163 ~-~~~~~~~~~p~----~~~~~ll---------~~~~--------------~~~~~~~~~l~nK~P~wne~~~~y~LnF~  214 (276)
T 2fim_A          163 S-AENERVPIRPR----NASDGLL---------VRWQ--------------NKTLESLIELHNKPPVWNDDSGSYTLNFQ  214 (276)
T ss_dssp             C-TTSCBCCCCCS----STTCSHH---------HHHH--------------HTCCTTEEEEEECCCEEETTTTEEECCCT
T ss_pred             c-cCCCEecccCC----Ccccccc---------hhhh--------------ccCCcceEeeeccCCcccccCCEEEEecC
Confidence            3 34555554432    2222210         1111              12457899999999999999999999999


Q ss_pred             CeeeccccceeEEEeccCCCCCCCCCCCCCCCCCCCCCceEEEeeccCCCeeEEEccCCCCHHHHHHHHHHcCccccccC
Q 014364          347 GRVTVASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE  426 (426)
Q Consensus       347 GRVt~aSVKNFQLv~~~~p~~~~~~~~q~~~~~~~~~~~iiLQFGKv~kd~FtmD~ryPLS~~QAFaIcLssfdtKlACe  426 (426)
                      ||||+|||||||||++                  +++++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus       215 GRVt~aSvKNFQLv~~------------------~d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace  276 (276)
T 2fim_A          215 GRVTQASVKNFQIVHA------------------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE  276 (276)
T ss_dssp             TCCCSCCTTCEEEECT------------------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred             CeeeccccceEEEEec------------------CCCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence            9999999999999983                  4678999999999999999999999999999999999999999998
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 426
d1c8za_265 d.23.1.1 (A:) Transcriptional factor tubby, C-term 1e-106
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 1e-04
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  312 bits (800), Expect = e-106
 Identities = 105/314 (33%), Positives = 155/314 (49%), Gaps = 64/314 (20%)

Query: 115 LKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGK--FLLSAKRTRRTTCTEYVI 172
             +P P+  TI+C I RDK  +   +F      L  E+GK  FLL+ ++ +++  + Y+I
Sbjct: 14  ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLI 73

Query: 173 SMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVP 232
           S+D  ++SR   +YIGKLRSN +GTKF +YD                    +   + +  
Sbjct: 74  SVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQ-------------KASSSTLESG 120

Query: 233 TGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFRNF 292
           T    +A V YE NVLG +GPR+M   +  +             +  + PR+  ++    
Sbjct: 121 TLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMV--------HERVCIRPRNEHETL--- 169

Query: 293 SKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVA 352
                                   +++  +  + L+NK P W++  Q + LNF GRVT A
Sbjct: 170 --------------------LARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQA 209

Query: 353 SVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAF 412
           SVKNFQ+I                    +D D I++QFG+V +D+FTMDY YPL A QAF
Sbjct: 210 SVKNFQIIH------------------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAF 251

Query: 413 AICLSSFDTKLACE 426
           AI LSSFD+KLACE
Sbjct: 252 AIALSSFDSKLACE 265
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query426
d1c8za_265 Transcriptional factor tubby, C-terminal domain {M 100.0
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 97.86
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 96.84
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 96.5
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 93.94
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-85  Score=634.79  Aligned_cols=247  Identities=43%  Similarity=0.734  Sum_probs=205.8

Q ss_pred             cccCCCCCCceEEEEEEEecCCc------eEEEEecccccccccCCeEEEEEEeeccCCceeEEEEecCCCcccCCCcee
Q 014364          114 SLKQPGPRDGTIQCFIKRDKSNL------TYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYI  187 (426)
Q Consensus       114 sLkqPgPrd~~iQCfIkRdK~~~------tY~LYL~l~~~~~~e~gKFLLaARK~rr~t~S~YiISld~~dlSr~S~~yV  187 (426)
                      .|.||||||++|||+|+|||+++      +|+|||+..    .++++|||||||+|+++++|||||+|++|+||+|++||
T Consensus        13 Fl~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~~----~gk~kfLLaArK~r~~~~~~yiIS~~~~d~sr~s~~yv   88 (265)
T d1c8za_          13 FALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDRE----DGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYI   88 (265)
T ss_dssp             HHHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEECT----TSCEEEEEEEEEEESSSSEEEEEESCHHHHTTTCCCCS
T ss_pred             HhcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEccC----CCceeEEEEEeeecCCCcceEEEEccHHHhccccccee
Confidence            48999999999999999999876      689998643    34567999999999999999999999999999999999


Q ss_pred             eEeeccceecEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCCCceeeEEEEEEeeccccCCCceeEEeecCCCccc
Q 014364          188 GKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASA  267 (426)
Q Consensus       188 GKLRSNflGTkFtIYD~gpp~~~~~~~~~~rsrr~~sk~vsp~vp~~~~ela~V~Ye~NVLg~rGPRrM~~im~~IP~s~  267 (426)
                      |||||||+||+|+|||+|++++.++..             +......+++||+|+||+||||+||||+|+|+|+.|+...
T Consensus        89 GKlrSNflGTkF~iYD~G~~p~~~~~~-------------~~~~~~~r~ela~V~Ye~n~l~~rGPR~m~~~ip~~~~~~  155 (265)
T d1c8za_          89 GKLRSNLMGTKFTVYDNGVNPQKASSS-------------TLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVH  155 (265)
T ss_dssp             EEEEECTTSSEEEEECSSBCGGGCCTT-------------GGGSSSBCCEEEEEEECCCCSSCCSCCCEEEEEECBCTTS
T ss_pred             EEeeccccCCEEEEecCCCCccccccc-------------ccccCccceeeeEEEEeeehhccCCCceeEEEecCCCccc
Confidence            999999999999999999877654422             1112344689999999999999999999999988876421


Q ss_pred             cCCCCCCCCCcccCCCCcccccccCCcccccccccccCccccccCCCCCcccCCCCceEeecCCCcccccccceEeecCC
Q 014364          268 LEPGGSVPGQAELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRG  347 (426)
Q Consensus       268 ~~~gg~~P~~~~~~~~~~~e~frs~s~~~d~~~~f~s~r~s~~~~~~~~~~~~~~~~lvL~nK~P~w~e~lq~~~LnF~G  347 (426)
                          ...+    +.|....++.         ...|.              ...++++++|+||+|+||++++||+|||+|
T Consensus       156 ----~~~~----~~p~~~~~~~---------~~~~~--------------~~~~~~~~~l~~k~P~~n~~~~~~~LnF~g  204 (265)
T d1c8za_         156 ----ERVC----IRPRNEHETL---------LARWQ--------------NKNTESIIELQNKTPVWNDDTQSYVLNFHG  204 (265)
T ss_dssp             ----CBCC----CCCSSTTSSH---------HHHHH--------------TTCCSSEEEEEECCCEEETTTTEEEEEETT
T ss_pred             ----cccc----cCCCCcchhh---------hHHhh--------------ccCcccceEEecCCCeeeccCCEEEeccCC
Confidence                1111    1111111110         00111              124678999999999999999999999999


Q ss_pred             eeeccccceeEEEeccCCCCCCCCCCCCCCCCCCCCCceEEEeeccCCCeeEEEccCCCCHHHHHHHHHHcCccccccC
Q 014364          348 RVTVASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE  426 (426)
Q Consensus       348 RVt~aSVKNFQLv~~~~p~~~~~~~~q~~~~~~~~~~~iiLQFGKv~kd~FtmD~ryPLS~~QAFaIcLssfdtKlACe  426 (426)
                      |||+|||||||||+.                  ++++++|||||||++|+|+|||+|||||+|||||||||||+|||||
T Consensus       205 Rv~~~SvKNFql~~~------------------~~~~~~~lqfgKv~~~~f~~d~~~Pls~~qaF~i~lssf~~Klace  265 (265)
T d1c8za_         205 RVTQASVKNFQIIHG------------------NDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE  265 (265)
T ss_dssp             EEEECBTTEEEEECT------------------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHSSCCCC
T ss_pred             EEeccccceEEEEeC------------------CCCCEEEEEEEEccCCeEEEEecCCCCHHHHHHHHHHHhccccccC
Confidence            999999999999982                  5678899999999999999999999999999999999999999998
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure