Query 014365
Match_columns 426
No_of_seqs 233 out of 346
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 10:15:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fim_A Tubby related protein 1 100.0 2E-90 6.9E-95 677.0 21.9 244 113-426 27-276 (276)
2 3c5n_A Tubby-related protein 1 100.0 1.4E-87 4.7E-92 647.9 21.8 237 114-420 4-246 (246)
3 1fs1_A SKP2 F-BOX, cyclin A/CD 97.9 1.9E-06 6.4E-11 63.1 1.0 40 50-97 5-44 (53)
4 2ast_B S-phase kinase-associat 96.4 0.00083 2.9E-08 63.2 1.4 40 50-97 5-44 (336)
5 2e31_A FBS1, F-box only protei 96.1 0.0013 4.6E-08 64.8 0.9 39 51-97 48-87 (297)
6 2p1m_B Transport inhibitor res 95.3 0.0037 1.3E-07 63.3 0.6 42 50-98 2-43 (594)
7 2ovr_B FBW7, F-BOX/WD repeat p 93.6 0.016 5.4E-07 56.2 0.7 41 49-97 14-54 (445)
8 3v7d_B Cell division control p 93.3 0.01 3.5E-07 57.4 -1.2 42 49-98 10-51 (464)
9 3l2o_B F-box only protein 4; s 91.5 0.023 7.9E-07 56.5 -1.3 39 52-98 3-41 (312)
10 1p22_A F-BOX/WD-repeat protein 90.0 0.037 1.3E-06 53.6 -1.4 41 49-97 6-50 (435)
11 3ogk_B Coronatine-insensitive 87.8 0.12 4.2E-06 52.2 0.6 37 54-97 13-49 (592)
12 1zxu_A AT5G01750 protein; PFAM 31.3 1.2E+02 0.004 27.5 7.2 11 236-246 166-176 (217)
No 1
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=100.00 E-value=2e-90 Score=677.04 Aligned_cols=244 Identities=43% Similarity=0.755 Sum_probs=187.4
Q ss_pred ccccCCCCCCceEEEEEEEecCCc------eEEEEecccccccccCCeEEEEEEeeccCCceeEEEEecCCCcccCCCce
Q 014365 113 VSLKQPGPRDGTIQCFIKRDKSNL------TYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTY 186 (426)
Q Consensus 113 isLkqPgPrd~~iQCfIkRdK~~~------tY~LYL~l~~~~~~e~gKFLLaARK~rr~t~S~YiISld~~dlSr~S~~y 186 (426)
-.|+||+|+|++|||+|+|||+|+ +|||||+ .|+++|||||||+|++++|||+||+|++||||++++|
T Consensus 27 ~fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~------~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~y 100 (276)
T 2fim_A 27 EFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD------TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENF 100 (276)
T ss_dssp TGGGSCCCTTCCEEEEEEEEC-------CCEEEEEEC------SSSCEEEEEEEECTTCSSCEEEEESCTTC------CE
T ss_pred HHhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe------CCCCEEEEEEEeccCCCCceEEEEecchhcccCCceE
Confidence 359999999999999999999984 9999985 4678999999999999999999999999999999999
Q ss_pred eeEeeccceecEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCCCceeeEEEEEEeeccccCCCceeEEeecCCCcc
Q 014365 187 IGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPAS 266 (426)
Q Consensus 187 VGKLRSNflGTkFtIYD~gpp~~~~~~~~~~rsrr~~sk~vsp~vp~~~~ela~V~Ye~NVLg~rGPRrM~~im~~IP~s 266 (426)
||||||||+||+|+|||+|++++. ..+|+++.+++|||+|+||+||||++|||+|+|+| |.+
T Consensus 101 vGKLrSNflGtkF~iyD~G~~p~~---------------~~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~i---P~~ 162 (276)
T 2fim_A 101 IGKLRSNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVII---PGM 162 (276)
T ss_dssp EEEEEECSSSSEEEEECSSBCGGG---------------CTTSCGGGBCCEEEEEEEC---------CCEEEEE---ECB
T ss_pred EEEEEEccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEe---cCc
Confidence 999999999999999999975532 23566778899999999999999999999999996 443
Q ss_pred ccCCCCCCCCCcccCCCCcccccccCCcccccccccccCccccccCCCCCcccCCCCceEeecCCCcccccccceEeecC
Q 014365 267 ALEPGGSVPGQAELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFR 346 (426)
Q Consensus 267 ~~~~gg~~P~~~~~~~~~~~e~frs~s~~~d~~~~f~s~r~s~~~~~~~~~~~~~~~~lvL~nK~P~w~e~lq~~~LnF~ 346 (426)
. +.|+.+|.++. ..++++- ..|. +...+++++|+||+|+|||++|||||||+
T Consensus 163 ~-~~~~~~~~~p~----~~~~~ll---------~~~~--------------~~~~~~~~~l~nK~P~wne~~~~y~LnF~ 214 (276)
T 2fim_A 163 S-AENERVPIRPR----NASDGLL---------VRWQ--------------NKTLESLIELHNKPPVWNDDSGSYTLNFQ 214 (276)
T ss_dssp C-TTSCBCCCCCS----STTCSHH---------HHHH--------------HTCCTTEEEEEECCCEEETTTTEEECCCT
T ss_pred c-cCCCEecccCC----Ccccccc---------hhhh--------------ccCCcceEeeeccCCcccccCCEEEEecC
Confidence 3 34555554432 2222210 1111 12457899999999999999999999999
Q ss_pred CeeeccccceeEEEeccCCCCCCCCCCCCCCCCCCCCCceEEEeeccCCCeeEEEccCCCCHHHHHHHHHHcCccccccC
Q 014365 347 GRVTVASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 426 (426)
Q Consensus 347 GRVt~aSVKNFQLv~~~~p~~~~~~~~q~~~~~~~~~~~iiLQFGKv~kd~FtmD~ryPLS~~QAFaIcLssfdtKlACe 426 (426)
||||+|||||||||++ +++++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus 215 GRVt~aSvKNFQLv~~------------------~d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace 276 (276)
T 2fim_A 215 GRVTQASVKNFQIVHA------------------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276 (276)
T ss_dssp TCCCSCCTTCEEEECT------------------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred CeeeccccceEEEEec------------------CCCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence 9999999999999983 4678999999999999999999999999999999999999999998
No 2
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=100.00 E-value=1.4e-87 Score=647.87 Aligned_cols=237 Identities=43% Similarity=0.747 Sum_probs=192.3
Q ss_pred cccCCCCCCceEEEEEEEecCCc------eEEEEecccccccccCCeEEEEEEeeccCCceeEEEEecCCCcccCCCcee
Q 014365 114 SLKQPGPRDGTIQCFIKRDKSNL------TYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYI 187 (426)
Q Consensus 114 sLkqPgPrd~~iQCfIkRdK~~~------tY~LYL~l~~~~~~e~gKFLLaARK~rr~t~S~YiISld~~dlSr~S~~yV 187 (426)
.|+||||+|++|||+|+|||+|+ +||||++ .++++|||||||++++++||||||+|++||||++++||
T Consensus 4 fl~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~------~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yv 77 (246)
T 3c5n_A 4 FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD------TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFI 77 (246)
T ss_dssp GGGSCCCTTCEEEEEEEECC------CCCEEEEEES------SSSCCEEEEEEECTTCSSCEEEEESCTTC------CEE
T ss_pred HcCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe------CCCcEEEEeeeeccCCCCceEEEEeCccccccCCceEE
Confidence 48999999999999999999985 8999985 35678999999999999999999999999999999999
Q ss_pred eEeeccceecEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCCCceeeEEEEEEeeccccCCCceeEEeecCCCccc
Q 014365 188 GKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASA 267 (426)
Q Consensus 188 GKLRSNflGTkFtIYD~gpp~~~~~~~~~~rsrr~~sk~vsp~vp~~~~ela~V~Ye~NVLg~rGPRrM~~im~~IP~s~ 267 (426)
|||||||+||+|+|||+|++++. ..+|+++.+++|||+|.||+||||++|||+|+|+| |.+.
T Consensus 78 GKLrsNf~Gt~F~iyD~g~~p~~---------------~~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~i---P~~~ 139 (246)
T 3c5n_A 78 GKLRSNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVII---PGMS 139 (246)
T ss_dssp EEEEECSSSSEEEEECSCBCGGG---------------CTTSCGGGBCCEEEEEEECCCCCC---CCCEEEEE---ECBC
T ss_pred EEEEEccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEe---cCcc
Confidence 99999999999999999975532 23466778899999999999999999999999996 4433
Q ss_pred cCCCCCCCCCcccCCCCcccccccCCcccccccccccCccccccCCCCCcccCCCCceEeecCCCcccccccceEeecCC
Q 014365 268 LEPGGSVPGQAELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRG 347 (426)
Q Consensus 268 ~~~gg~~P~~~~~~~~~~~e~frs~s~~~d~~~~f~s~r~s~~~~~~~~~~~~~~~~lvL~nK~P~w~e~lq~~~LnF~G 347 (426)
++|+.+|.++. ..++++- ..+. +...+++++|+||+|+|||++|||||||+|
T Consensus 140 -~~~~~~~~~p~----~~~~~~~---------~~~~--------------~~~~~~~~~l~nK~P~w~e~~~~y~LnF~G 191 (246)
T 3c5n_A 140 -AENERVPIRPR----NASDGLL---------VRWQ--------------NKTLESLIELHNKPPVWNDDSGSYTLNFQG 191 (246)
T ss_dssp -TTSCBCCCCCS----STTSSHH---------HHHH--------------HTCCTTEEEEEECCCEEETTTTEEECCCTT
T ss_pred -cCCCEeeccCC----Cccccch---------hhhh--------------ccCCcceEEEeccCCcccccCCEEEEecCC
Confidence 45555555432 2222210 1111 124578999999999999999999999999
Q ss_pred eeeccccceeEEEeccCCCCCCCCCCCCCCCCCCCCCceEEEeeccCCCeeEEEccCCCCHHHHHHHHHHcCc
Q 014365 348 RVTVASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFD 420 (426)
Q Consensus 348 RVt~aSVKNFQLv~~~~p~~~~~~~~q~~~~~~~~~~~iiLQFGKv~kd~FtmD~ryPLS~~QAFaIcLssfd 420 (426)
|||+|||||||||++ +++++||||||||++|+|||||+|||||||||||||||||
T Consensus 192 Rvt~aSvKNFqLv~~------------------~~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD 246 (246)
T 3c5n_A 192 RVTQASVKNFQIVHA------------------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246 (246)
T ss_dssp SCCBCCTTCEEEEBT------------------TBTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred eeeccccceEEEEec------------------CCCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 999999999999983 4678999999999999999999999999999999999998
No 3
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=97.94 E-value=1.9e-06 Score=63.09 Aligned_cols=40 Identities=25% Similarity=0.606 Sum_probs=32.8
Q ss_pred ccCccCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHH
Q 014365 50 QNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCK 97 (426)
Q Consensus 50 ~~~~w~~~p~ell~~~~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 97 (426)
.+..|+.||+|+|..|+.++. .++++.|+.||+.|+.++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~--------~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLC--------LPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSC--------GGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHhC
Confidence 356799999999999999994 3688999999999999875
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.41 E-value=0.00083 Score=63.24 Aligned_cols=40 Identities=25% Similarity=0.615 Sum_probs=34.0
Q ss_pred ccCccCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHH
Q 014365 50 QNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCK 97 (426)
Q Consensus 50 ~~~~w~~~p~ell~~~~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 97 (426)
.+..|+.||+|+|..|+..+.. ++++.|+.||+.|++++.
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~--------~d~~~~~~vc~~W~~~~~ 44 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCL--------PELLKVSGVCKRWYRLAS 44 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCH--------HHHHHTTSSCHHHHHHHT
T ss_pred ccCChhhCCHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999954 367899999999999884
No 5
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=96.07 E-value=0.0013 Score=64.84 Aligned_cols=39 Identities=38% Similarity=0.679 Sum_probs=34.2
Q ss_pred cCccCCCChHHHHHHHHHhhhcCCCCCCcccee-eecccchhHHHHHH
Q 014365 51 NSRWAGLPPELLRDVIKRLEASESTWPARKHVV-ACAAVCRSWREMCK 97 (426)
Q Consensus 51 ~~~w~~~p~ell~~~~~r~e~se~~wp~r~~vv-aca~vc~~wr~~~~ 97 (426)
....+.||+|||.+|+.||.. ++++ .|+.||+.||.++.
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~--------~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPA--------TELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCH--------HHHHHTGGGTCHHHHHHHT
T ss_pred ccChhhCCHHHHHHHHHcCCH--------HHHHHHHHHHhHHHHHHhc
Confidence 346789999999999999976 5688 99999999999874
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.28 E-value=0.0037 Score=63.27 Aligned_cols=42 Identities=26% Similarity=0.431 Sum_probs=29.4
Q ss_pred ccCccCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHHH
Q 014365 50 QNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKE 98 (426)
Q Consensus 50 ~~~~w~~~p~ell~~~~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 98 (426)
+...|+.||+|+|..|+..+. ..+++++|+-||++|+.+...
T Consensus 2 ~~d~~~~LPdevL~~If~~L~-------~~~d~~~~s~vck~W~~~~~~ 43 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQ-------LDKDRNSVSLVCKSWYEIERW 43 (594)
T ss_dssp --------CHHHHHHHHHTCC-------CHHHHHHHHTSCHHHHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhcC-------CchhHHHHHHHHHHHHHhhhh
Confidence 457899999999999999985 346889999999999999543
No 7
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=93.63 E-value=0.016 Score=56.15 Aligned_cols=41 Identities=34% Similarity=0.523 Sum_probs=35.3
Q ss_pred cccCccCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHH
Q 014365 49 IQNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCK 97 (426)
Q Consensus 49 ~~~~~w~~~p~ell~~~~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 97 (426)
....-++.||+|||..|+..|+. ++++.||.||+.|++++.
T Consensus 14 ~~~d~~~~lp~e~~~~i~~~l~~--------~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLSFLEP--------KDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHTTSCH--------HHHHHHTTSCHHHHHHHT
T ss_pred ccCChhHHCCHHHHHHHHHhCCH--------HHHHHHHHHhHHHHhhcC
Confidence 35567999999999999999965 468999999999998874
No 8
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=93.31 E-value=0.01 Score=57.38 Aligned_cols=42 Identities=14% Similarity=0.420 Sum_probs=36.0
Q ss_pred cccCccCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHHH
Q 014365 49 IQNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKE 98 (426)
Q Consensus 49 ~~~~~w~~~p~ell~~~~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 98 (426)
.+..-++.||+|||..|+..|+. ++++.|+.||+.|+.++.+
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQF--------EDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSCH--------HHHHHHHTTCHHHHHHHTT
T ss_pred cccCChHHCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHHcC
Confidence 45567889999999999999955 5789999999999998754
No 9
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=91.53 E-value=0.023 Score=56.54 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=34.5
Q ss_pred CccCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHHH
Q 014365 52 SRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKE 98 (426)
Q Consensus 52 ~~w~~~p~ell~~~~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 98 (426)
+-|..||.|++..|+.-|+. +++..||.||+.||.++.+
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p--------~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSP--------HDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCH--------HHHHHHHTTCHHHHHHHTC
T ss_pred chhHhCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcc
Confidence 34789999999999999987 5789999999999999854
No 10
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=90.01 E-value=0.037 Score=53.61 Aligned_cols=41 Identities=24% Similarity=0.574 Sum_probs=34.7
Q ss_pred cccCccCCCChH----HHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHH
Q 014365 49 IQNSRWAGLPPE----LLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCK 97 (426)
Q Consensus 49 ~~~~~w~~~p~e----ll~~~~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 97 (426)
.+..-.+.||+| ||..|+..|+. +++..||.||+.|++++.
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~ 50 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTS 50 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhc
Confidence 445667789999 99999999886 578899999999998884
No 11
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=87.80 E-value=0.12 Score=52.19 Aligned_cols=37 Identities=16% Similarity=0.373 Sum_probs=31.6
Q ss_pred cCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHH
Q 014365 54 WAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCK 97 (426)
Q Consensus 54 w~~~p~ell~~~~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 97 (426)
.+.||+|+|..|+..++ +.++.++|+-||++|+.+..
T Consensus 13 ~~~LPdeil~~I~~~L~-------~~~d~~~~s~vck~W~~~~~ 49 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYIT-------DPKDRDSASLVCRRWFKIDS 49 (592)
T ss_dssp CCCCGGGTHHHHHTTCC-------CHHHHHHHTTSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhcC-------CHHHHHHHHHHhHHHHHhhh
Confidence 45899999999999994 24678999999999999854
No 12
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=31.31 E-value=1.2e+02 Score=27.50 Aligned_cols=11 Identities=18% Similarity=0.081 Sum_probs=6.5
Q ss_pred eeeEEEEEEee
Q 014365 236 YNIAQVSYELN 246 (426)
Q Consensus 236 ~ela~V~Ye~N 246 (426)
..||.|+-+.+
T Consensus 166 ~~Va~I~kk~~ 176 (217)
T 1zxu_A 166 AIVAQMHRKHT 176 (217)
T ss_dssp CEEEEEEEC--
T ss_pred EEEEEEEeeee
Confidence 46788877644
Done!