Query 014365
Match_columns 426
No_of_seqs 233 out of 346
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 10:15:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014365.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014365hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1c8za_ d.23.1.1 (A:) Transcri 100.0 3.2E-85 2.3E-89 634.8 20.7 247 114-426 13-265 (265)
2 d1fs1a1 a.158.1.1 (A:109-149) 97.9 1.3E-06 9.3E-11 60.3 0.8 36 54-97 1-36 (41)
3 d2ovrb1 a.158.1.1 (B:2263-2364 96.8 9.4E-05 6.8E-09 58.3 0.3 41 49-97 14-54 (102)
4 d1nexb1 a.158.1.1 (B:270-369) 96.5 0.00016 1.2E-08 57.3 -0.5 38 52-97 4-41 (100)
5 d1p22a1 a.158.1.1 (A:135-252) 93.9 0.0049 3.6E-07 49.6 0.1 41 50-98 7-51 (118)
6 d2q4ma1 d.23.1.2 (A:24-212) Hy 44.7 26 0.0019 29.2 7.2 75 123-204 62-139 (189)
7 d2iqia1 c.51.6.2 (A:32-209) Hy 18.6 23 0.0017 28.9 2.0 26 47-72 49-75 (178)
8 d1lqla_ d.227.1.1 (A:) Hypothe 14.7 57 0.0042 25.4 3.4 15 406-420 39-53 (141)
9 d1gpma3 d.52.2.1 (A:405-525) G 13.0 43 0.0031 26.8 2.1 18 52-69 79-96 (121)
10 d1ddga1 b.43.4.1 (A:226-446) S 10.4 69 0.005 27.0 2.8 59 53-133 142-218 (221)
No 1
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00 E-value=3.2e-85 Score=634.79 Aligned_cols=247 Identities=43% Similarity=0.734 Sum_probs=205.8
Q ss_pred cccCCCCCCceEEEEEEEecCCc------eEEEEecccccccccCCeEEEEEEeeccCCceeEEEEecCCCcccCCCcee
Q 014365 114 SLKQPGPRDGTIQCFIKRDKSNL------TYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYI 187 (426)
Q Consensus 114 sLkqPgPrd~~iQCfIkRdK~~~------tY~LYL~l~~~~~~e~gKFLLaARK~rr~t~S~YiISld~~dlSr~S~~yV 187 (426)
.|.||||||++|||+|+|||+++ +|+|||+.. .++++|||||||+|+++++|||||+|++|+||+|++||
T Consensus 13 Fl~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~~----~gk~kfLLaArK~r~~~~~~yiIS~~~~d~sr~s~~yv 88 (265)
T d1c8za_ 13 FALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDRE----DGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYI 88 (265)
T ss_dssp HHHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEECT----TSCEEEEEEEEEEESSSSEEEEEESCHHHHTTTCCCCS
T ss_pred HhcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEccC----CCceeEEEEEeeecCCCcceEEEEccHHHhccccccee
Confidence 48999999999999999999876 689998643 34567999999999999999999999999999999999
Q ss_pred eEeeccceecEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCCCceeeEEEEEEeeccccCCCceeEEeecCCCccc
Q 014365 188 GKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASA 267 (426)
Q Consensus 188 GKLRSNflGTkFtIYD~gpp~~~~~~~~~~rsrr~~sk~vsp~vp~~~~ela~V~Ye~NVLg~rGPRrM~~im~~IP~s~ 267 (426)
|||||||+||+|+|||+|++++.++.. +......+++||+|+||+||||+||||+|+|+|+.|+...
T Consensus 89 GKlrSNflGTkF~iYD~G~~p~~~~~~-------------~~~~~~~r~ela~V~Ye~n~l~~rGPR~m~~~ip~~~~~~ 155 (265)
T d1c8za_ 89 GKLRSNLMGTKFTVYDNGVNPQKASSS-------------TLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVH 155 (265)
T ss_dssp EEEEECTTSSEEEEECSSBCGGGCCTT-------------GGGSSSBCCEEEEEEECCCCSSCCSCCCEEEEEECBCTTS
T ss_pred EEeeccccCCEEEEecCCCCccccccc-------------ccccCccceeeeEEEEeeehhccCCCceeEEEecCCCccc
Confidence 999999999999999999877654422 1112344689999999999999999999999988876421
Q ss_pred cCCCCCCCCCcccCCCCcccccccCCcccccccccccCccccccCCCCCcccCCCCceEeecCCCcccccccceEeecCC
Q 014365 268 LEPGGSVPGQAELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRG 347 (426)
Q Consensus 268 ~~~gg~~P~~~~~~~~~~~e~frs~s~~~d~~~~f~s~r~s~~~~~~~~~~~~~~~~lvL~nK~P~w~e~lq~~~LnF~G 347 (426)
...+ +.|....++. ...|. ...++++++|+||+|+||++++||+|||+|
T Consensus 156 ----~~~~----~~p~~~~~~~---------~~~~~--------------~~~~~~~~~l~~k~P~~n~~~~~~~LnF~g 204 (265)
T d1c8za_ 156 ----ERVC----IRPRNEHETL---------LARWQ--------------NKNTESIIELQNKTPVWNDDTQSYVLNFHG 204 (265)
T ss_dssp ----CBCC----CCCSSTTSSH---------HHHHH--------------TTCCSSEEEEEECCCEEETTTTEEEEEETT
T ss_pred ----cccc----cCCCCcchhh---------hHHhh--------------ccCcccceEEecCCCeeeccCCEEEeccCC
Confidence 1111 1111111110 00111 124678999999999999999999999999
Q ss_pred eeeccccceeEEEeccCCCCCCCCCCCCCCCCCCCCCceEEEeeccCCCeeEEEccCCCCHHHHHHHHHHcCccccccC
Q 014365 348 RVTVASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 426 (426)
Q Consensus 348 RVt~aSVKNFQLv~~~~p~~~~~~~~q~~~~~~~~~~~iiLQFGKv~kd~FtmD~ryPLS~~QAFaIcLssfdtKlACe 426 (426)
|||+|||||||||+. ++++++|||||||++|+|+|||+|||||+|||||||||||+|||||
T Consensus 205 Rv~~~SvKNFql~~~------------------~~~~~~~lqfgKv~~~~f~~d~~~Pls~~qaF~i~lssf~~Klace 265 (265)
T d1c8za_ 205 RVTQASVKNFQIIHG------------------NDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265 (265)
T ss_dssp EEEECBTTEEEEECT------------------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHSSCCCC
T ss_pred EEeccccceEEEEeC------------------CCCCEEEEEEEEccCCeEEEEecCCCCHHHHHHHHHHHhccccccC
Confidence 999999999999982 5678899999999999999999999999999999999999999998
No 2
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.86 E-value=1.3e-06 Score=60.27 Aligned_cols=36 Identities=28% Similarity=0.692 Sum_probs=32.8
Q ss_pred cCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHH
Q 014365 54 WAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCK 97 (426)
Q Consensus 54 w~~~p~ell~~~~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 97 (426)
|.+||.|+|..|+..+.. ++++.|+.|||+|++++.
T Consensus 1 f~~LP~eil~~If~~L~~--------~dl~~~~~Vcr~w~~l~~ 36 (41)
T d1fs1a1 1 WDSLPDELLLGIFSCLCL--------PELLKVSGVCKRWYRLAS 36 (41)
T ss_dssp CCSSCHHHHHHHHTTSCG--------GGHHHHHTTCHHHHHHHT
T ss_pred CCcCCHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHhC
Confidence 889999999999999965 579999999999999875
No 3
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.84 E-value=9.4e-05 Score=58.29 Aligned_cols=41 Identities=34% Similarity=0.523 Sum_probs=35.6
Q ss_pred cccCccCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHH
Q 014365 49 IQNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCK 97 (426)
Q Consensus 49 ~~~~~w~~~p~ell~~~~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 97 (426)
.+.+-=+.||+|+|..|+..|+. +++++||.||+.|++++.
T Consensus 14 ~~~D~i~~LP~Eil~~Ils~Ld~--------~dL~~~~~vcr~w~~l~~ 54 (102)
T d2ovrb1 14 FQRDFISLLPKELALYVLSFLEP--------KDLLQAAQTCRYWRILAE 54 (102)
T ss_dssp CCCSTTTSSCHHHHHHHHTTSCH--------HHHHHHTTSCHHHHHHHT
T ss_pred hccCChhhCCHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHHC
Confidence 44556778999999999999976 589999999999999884
No 4
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=96.50 E-value=0.00016 Score=57.32 Aligned_cols=38 Identities=16% Similarity=0.413 Sum_probs=32.8
Q ss_pred CccCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHH
Q 014365 52 SRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCK 97 (426)
Q Consensus 52 ~~w~~~p~ell~~~~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 97 (426)
+-.+.||+||+..|+..|+. ++++.|+.||++|+.++.
T Consensus 4 D~~~~LP~Ell~~I~s~Ld~--------~dL~~~s~Vcr~W~~~~~ 41 (100)
T d1nexb1 4 DLITSLPFEISLKIFNYLQF--------EDIINSLGVSQNWNKIIR 41 (100)
T ss_dssp CHHHHSCHHHHHHHHTTSCH--------HHHHHHTTTCHHHHHHHH
T ss_pred CchhhCCHHHHHHHHHCCCH--------HHHHHHHHHHHHHHHHHH
Confidence 44678999999999998854 589999999999998874
No 5
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.94 E-value=0.0049 Score=49.57 Aligned_cols=41 Identities=24% Similarity=0.565 Sum_probs=33.1
Q ss_pred ccCccCCCC----hHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHHH
Q 014365 50 QNSRWAGLP----PELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKE 98 (426)
Q Consensus 50 ~~~~w~~~p----~ell~~~~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 98 (426)
+.+-=++|| +|++..|+.-|+. +++..||.||+.|++++.+
T Consensus 7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~--------~dL~~~s~Vck~W~~l~~d 51 (118)
T d1p22a1 7 QRDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD 51 (118)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred cccHHHHCCCCChHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHHcC
Confidence 334445677 5999999999877 5799999999999999863
No 6
>d2q4ma1 d.23.1.2 (A:24-212) Hypothetical protein At5g01750 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=44.71 E-value=26 Score=29.18 Aligned_cols=75 Identities=13% Similarity=0.298 Sum_probs=42.2
Q ss_pred ceEEEEEEEecCCc--eEEEEecccccccccCCeEEEEEEeecc-CCceeEEEEecCCCcccCCCceeeEeeccceecEE
Q 014365 123 GTIQCFIKRDKSNL--TYHLFLCLSPALLVENGKFLLSAKRTRR-TTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKF 199 (426)
Q Consensus 123 ~~iQCfIkRdK~~~--tY~LYL~l~~~~~~e~gKFLLaARK~rr-~t~S~YiISld~~dlSr~S~~yVGKLRSNflGTkF 199 (426)
|..-..|+|..-.. +|..|++.+ .+..+.+...||... ...+++-|.+....- .....| +++.||++-.|
T Consensus 62 G~~L~~i~~k~~s~~~~w~v~~~~~----~~~~~~~~~~kk~~~~~~~~~~~v~~~~~~~-~~~~~~--~i~G~~~~~~~ 134 (189)
T d2q4ma1 62 GTPVVTLREKMVSMHDRWQVFRGGS----TDQRDLLYTVKRSSMLQLKTKLDVFLGHNKD-EKRCDF--RVKGSWLERSC 134 (189)
T ss_dssp SCEEEEEEC------CEEEEEETTC----CCGGGEEEEEEC-------CCEEEEETTCCC--CCCSE--EEESCTTTTCC
T ss_pred CCEEEEEEeeccccCceEEEEECCC----CCccceEEEEEeeeeeeccccEEEEeccCCC-CCcceE--EEEeeeccceE
Confidence 44447777654443 899998633 234456677776432 235577777754321 123345 78889999999
Q ss_pred EEecC
Q 014365 200 IIYDT 204 (426)
Q Consensus 200 tIYD~ 204 (426)
+|||.
T Consensus 135 ~i~~~ 139 (189)
T d2q4ma1 135 VVYAG 139 (189)
T ss_dssp EEEEG
T ss_pred EEEEC
Confidence 99974
No 7
>d2iqia1 c.51.6.2 (A:32-209) Hypothetical protein XCC0632 {Xanthomonas campestris pv. campestris [TaxId: 340]}
Probab=18.65 E-value=23 Score=28.87 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=21.2
Q ss_pred cccccCccCCCChHHHHHHHHH-hhhc
Q 014365 47 VVIQNSRWAGLPPELLRDVIKR-LEAS 72 (426)
Q Consensus 47 ~~~~~~~w~~~p~ell~~~~~r-~e~s 72 (426)
......+|+..|+++|+++|.+ |+.+
T Consensus 49 ~~~~~~rWa~~~~~~l~~~L~~~L~~~ 75 (178)
T d2iqia1 49 QVYHGAGWAQPATDMLEDSVVRAFEDS 75 (178)
T ss_dssp EECTTEEESSCHHHHHHHHHHHHHHTT
T ss_pred eeccCCccccCHHHHHHHHHHHHHHhc
Confidence 4567889999999999998866 6653
No 8
>d1lqla_ d.227.1.1 (A:) Hypothetical protein MPN625 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=14.69 E-value=57 Score=25.42 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHcCc
Q 014365 406 LSAFQAFAICLSSFD 420 (426)
Q Consensus 406 LS~~QAFaIcLssfd 420 (426)
++|.|.|+.+|+++-
T Consensus 39 ~~P~elllaaLa~C~ 53 (141)
T d1lqla_ 39 FGPLAALLSGLAACE 53 (141)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 599999999998763
No 9
>d1gpma3 d.52.2.1 (A:405-525) GMP synthetase C-terminal dimerisation domain {Escherichia coli [TaxId: 562]}
Probab=13.00 E-value=43 Score=26.77 Aligned_cols=18 Identities=39% Similarity=0.791 Sum_probs=16.0
Q ss_pred CccCCCChHHHHHHHHHh
Q 014365 52 SRWAGLPPELLRDVIKRL 69 (426)
Q Consensus 52 ~~w~~~p~ell~~~~~r~ 69 (426)
..|+.||.|+|..|-.|+
T Consensus 79 A~~~~~p~~~L~~is~rI 96 (121)
T d1gpma3 79 AHWAHLPYDFLGRVSNRI 96 (121)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred ccCccCCHHHHHHHHHHH
Confidence 469999999999998886
No 10
>d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}
Probab=10.40 E-value=69 Score=26.98 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=38.9
Q ss_pred ccCCCChHHHHHHHHHhhh-------cCCCCCCccceeee-----------cccchhHHHHHHHHhcCCccccccccccc
Q 014365 53 RWAGLPPELLRDVIKRLEA-------SESTWPARKHVVAC-----------AAVCRSWREMCKEIVRNPEFSGKITFPVS 114 (426)
Q Consensus 53 ~w~~~p~ell~~~~~r~e~-------se~~wp~r~~vvac-----------a~vc~~wr~~~~eiv~~pe~~g~~tfpis 114 (426)
....+|.|.|.|++-++-- |-...|.+-++... -|||.+|=. +
T Consensus 142 ~~~~~pl~~ll~~lp~l~PR~YSIsSSp~~~p~~i~ltv~vv~~~~~~~~r~GvcS~~L~---~---------------- 202 (221)
T d1ddga1 142 SPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLA---D---------------- 202 (221)
T ss_dssp SCCCCCHHHHHHHSCBCCCEEEEBCCCTTTSCSEEEEEEEECEEEETTEEEECHHHHHHH---H----------------
T ss_pred ccCCCCHHHHHHhhhccCceeeeeccccccCCCeeeEEEEEEEeeCCCCccceecHHHHH---h----------------
Confidence 4578999999999998763 23445766554222 388888842 0
Q ss_pred ccCCCCCCceEEEEEEEec
Q 014365 115 LKQPGPRDGTIQCFIKRDK 133 (426)
Q Consensus 115 LkqPgPrd~~iQCfIkRdK 133 (426)
.. +.+..|.|||+++.
T Consensus 203 ~l---~~g~~V~v~ir~s~ 218 (221)
T d1ddga1 203 RV---EEEGEVRVFIEHND 218 (221)
T ss_dssp SC---CSSCEEEEEEECCT
T ss_pred hC---CCCCEEEEEEecCC
Confidence 11 22568999998764
Done!