Query 014366
Match_columns 426
No_of_seqs 492 out of 2510
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:25:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 4.4E-93 9.6E-98 731.9 44.4 416 2-420 280-697 (716)
2 COG2274 SunT ABC-type bacterio 100.0 1.4E-87 3E-92 714.3 47.8 412 2-415 285-697 (709)
3 KOG0055 Multidrug/pheromone ex 100.0 6.6E-83 1.4E-87 689.2 46.8 411 4-416 802-1215(1228)
4 TIGR03375 type_I_sec_LssB type 100.0 1.6E-80 3.4E-85 672.6 51.7 411 3-415 278-689 (694)
5 PRK11174 cysteine/glutathione 100.0 1.6E-80 3.5E-85 661.1 50.8 409 3-416 156-574 (588)
6 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.5E-80 5.4E-85 670.2 52.9 407 3-416 268-675 (686)
7 COG1132 MdlB ABC-type multidru 100.0 2.8E-80 6E-85 656.5 50.2 408 3-415 145-553 (567)
8 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 5.8E-80 1.3E-84 669.9 51.0 410 3-416 286-702 (710)
9 COG4988 CydD ABC-type transpor 100.0 5.9E-80 1.3E-84 624.0 47.0 410 3-416 133-545 (559)
10 TIGR01193 bacteriocin_ABC ABC- 100.0 9.2E-80 2E-84 668.0 50.7 410 3-415 288-698 (708)
11 PRK11176 lipid transporter ATP 100.0 5.4E-79 1.2E-83 648.8 51.4 411 3-416 158-569 (582)
12 TIGR00958 3a01208 Conjugate Tr 100.0 6E-79 1.3E-83 660.4 51.0 409 3-416 294-704 (711)
13 KOG0055 Multidrug/pheromone ex 100.0 1.7E-79 3.7E-84 662.8 38.1 411 4-416 165-578 (1228)
14 PRK11160 cysteine/glutathione 100.0 1E-77 2.2E-82 636.9 50.9 409 3-416 153-564 (574)
15 TIGR01846 type_I_sec_HlyB type 100.0 1.6E-77 3.5E-82 648.8 51.8 411 3-416 271-682 (694)
16 TIGR02203 MsbA_lipidA lipid A 100.0 4.4E-77 9.5E-82 632.9 51.0 411 3-416 147-558 (571)
17 PRK10790 putative multidrug tr 100.0 9.6E-77 2.1E-81 632.6 51.7 406 3-416 158-565 (592)
18 PRK13657 cyclic beta-1,2-gluca 100.0 2.5E-76 5.4E-81 628.8 52.7 409 4-415 150-559 (588)
19 TIGR01842 type_I_sec_PrtD type 100.0 1.2E-75 2.7E-80 617.9 51.6 407 3-414 134-542 (544)
20 TIGR02868 CydC thiol reductant 100.0 4.1E-76 8.8E-81 620.0 47.7 380 3-386 146-529 (529)
21 PRK10789 putative multidrug tr 100.0 1.6E-75 3.4E-80 619.9 52.4 407 6-416 133-540 (569)
22 PTZ00265 multidrug resistance 100.0 3.8E-76 8.3E-81 673.2 50.8 408 3-415 961-1453(1466)
23 KOG0056 Heavy metal exporter H 100.0 2.5E-78 5.4E-83 592.9 27.5 410 4-416 353-763 (790)
24 TIGR01192 chvA glucan exporter 100.0 3.9E-75 8.4E-80 618.3 52.4 411 3-416 149-560 (585)
25 TIGR02204 MsbA_rel ABC transpo 100.0 6.6E-75 1.4E-79 616.8 51.2 411 4-416 152-565 (576)
26 KOG0057 Mitochondrial Fe/S clu 100.0 1.3E-75 2.8E-80 584.3 41.7 400 10-415 175-575 (591)
27 TIGR02857 CydD thiol reductant 100.0 1.2E-74 2.6E-79 608.9 50.1 392 3-398 137-529 (529)
28 COG4987 CydC ABC-type transpor 100.0 1.1E-74 2.5E-79 577.1 43.1 408 5-416 153-563 (573)
29 TIGR00957 MRP_assoc_pro multi 100.0 1.4E-73 3E-78 657.7 52.0 408 4-416 1099-1510(1522)
30 COG5265 ATM1 ABC-type transpor 100.0 9E-74 2E-78 554.8 30.3 410 4-416 77-488 (497)
31 PTZ00243 ABC transporter; Prov 100.0 7.5E-72 1.6E-76 642.3 51.8 410 4-416 1092-1535(1560)
32 PLN03130 ABC transporter C fam 100.0 7.3E-72 1.6E-76 643.3 51.7 381 29-416 1072-1463(1622)
33 PLN03232 ABC transporter C fam 100.0 2E-71 4.4E-76 639.0 50.6 381 32-417 1072-1461(1495)
34 PTZ00265 multidrug resistance 100.0 4.4E-71 9.5E-76 631.6 50.0 398 3-401 190-655 (1466)
35 COG4618 ArpD ABC-type protease 100.0 4E-71 8.7E-76 547.2 38.1 407 4-415 153-561 (580)
36 TIGR01271 CFTR_protein cystic 100.0 7.8E-69 1.7E-73 616.7 52.0 406 4-415 1019-1441(1490)
37 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.7E-68 8.1E-73 561.8 46.5 391 3-406 145-551 (555)
38 KOG0054 Multidrug resistance-a 100.0 1.4E-68 3E-73 590.2 43.0 413 4-421 952-1369(1381)
39 PLN03232 ABC transporter C fam 100.0 4.4E-66 9.6E-71 594.8 47.3 372 26-415 456-829 (1495)
40 PLN03130 ABC transporter C fam 100.0 2.4E-65 5.1E-70 589.5 49.0 375 22-415 452-829 (1622)
41 PRK10522 multidrug transporter 100.0 1.3E-63 2.8E-68 526.7 47.3 386 3-407 140-531 (547)
42 TIGR00957 MRP_assoc_pro multi 100.0 3.8E-61 8.3E-66 554.6 48.5 385 13-414 460-850 (1522)
43 KOG0054 Multidrug resistance-a 100.0 1E-60 2.2E-65 527.8 46.2 386 13-415 344-732 (1381)
44 TIGR00954 3a01203 Peroxysomal 100.0 1.6E-60 3.4E-65 511.4 45.9 380 5-400 233-653 (659)
45 TIGR01271 CFTR_protein cystic 100.0 1E-58 2.2E-63 533.1 49.2 388 5-415 216-637 (1490)
46 COG1126 GlnQ ABC-type polar am 100.0 5.2E-60 1.1E-64 424.7 21.3 218 187-417 2-228 (240)
47 PTZ00243 ABC transporter; Prov 100.0 5.6E-57 1.2E-61 519.3 46.2 394 5-415 381-871 (1560)
48 COG1135 AbcC ABC-type metal io 100.0 4.7E-57 1E-61 425.0 20.2 219 188-417 2-234 (339)
49 COG1125 OpuBA ABC-type proline 100.0 5.8E-57 1.3E-61 412.9 18.7 218 188-418 2-229 (309)
50 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.4E-55 5.2E-60 423.8 26.8 227 186-416 1-227 (275)
51 COG1117 PstB ABC-type phosphat 100.0 4.2E-56 9.1E-61 397.9 19.1 223 186-417 6-240 (253)
52 COG3839 MalK ABC-type sugar tr 100.0 1.5E-54 3.2E-59 421.9 23.2 224 187-425 3-234 (338)
53 COG1120 FepC ABC-type cobalami 100.0 1.7E-54 3.8E-59 406.8 22.2 217 187-416 2-230 (258)
54 COG3842 PotA ABC-type spermidi 100.0 2.7E-54 5.9E-59 422.2 20.4 225 186-425 4-237 (352)
55 PRK14257 phosphate ABC transpo 100.0 4.9E-53 1.1E-57 417.7 26.4 227 184-417 77-316 (329)
56 COG1136 SalX ABC-type antimicr 100.0 6.6E-53 1.4E-57 388.8 24.3 207 188-404 2-221 (226)
57 cd03252 ABCC_Hemolysin The ABC 100.0 1.2E-52 2.7E-57 397.6 26.6 226 188-415 1-226 (237)
58 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 8.9E-53 1.9E-57 393.3 23.6 215 187-418 4-231 (254)
59 COG1127 Ttg2A ABC-type transpo 100.0 7.5E-53 1.6E-57 384.0 20.8 219 186-417 7-238 (263)
60 cd03244 ABCC_MRP_domain2 Domai 100.0 7E-52 1.5E-56 388.3 27.6 219 187-408 2-220 (221)
61 cd03251 ABCC_MsbA MsbA is an e 100.0 7.4E-52 1.6E-56 391.5 26.6 227 188-416 1-227 (234)
62 COG1122 CbiO ABC-type cobalt t 100.0 1.5E-52 3.3E-57 392.9 21.6 221 187-419 3-233 (235)
63 COG2884 FtsE Predicted ATPase 100.0 1.6E-52 3.4E-57 368.6 20.0 208 188-407 2-219 (223)
64 COG1116 TauB ABC-type nitrate/ 100.0 2.3E-52 5E-57 385.7 21.8 199 187-403 3-211 (248)
65 cd03254 ABCC_Glucan_exporter_l 100.0 8.3E-52 1.8E-56 389.9 26.1 225 187-414 2-226 (229)
66 TIGR02314 ABC_MetN D-methionin 100.0 2.6E-52 5.7E-57 413.6 23.6 218 188-416 2-232 (343)
67 cd03288 ABCC_SUR2 The SUR doma 100.0 1.8E-51 3.8E-56 394.4 27.8 232 184-418 16-247 (257)
68 COG3638 ABC-type phosphate/pho 100.0 3E-52 6.4E-57 379.1 20.8 215 187-413 3-236 (258)
69 cd03245 ABCC_bacteriocin_expor 100.0 2.5E-51 5.4E-56 384.3 27.3 219 187-407 2-220 (220)
70 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.4E-51 7.3E-56 388.1 26.1 227 188-416 1-228 (238)
71 cd03253 ABCC_ATM1_transporter 100.0 5.3E-51 1.1E-55 386.1 26.6 225 188-415 1-225 (236)
72 COG1118 CysA ABC-type sulfate/ 100.0 5.3E-52 1.1E-56 389.9 18.8 226 187-425 2-238 (345)
73 COG1124 DppF ABC-type dipeptid 100.0 2.2E-51 4.7E-56 376.0 22.0 219 187-416 3-233 (252)
74 PRK11650 ugpC glycerol-3-phosp 100.0 5.1E-51 1.1E-55 407.2 25.4 219 187-419 3-229 (356)
75 PRK13631 cbiO cobalt transport 100.0 1.3E-50 2.7E-55 399.3 27.8 228 186-420 20-271 (320)
76 COG3840 ThiQ ABC-type thiamine 100.0 3.1E-51 6.7E-56 357.8 20.3 212 188-416 2-221 (231)
77 PRK11432 fbpC ferric transport 100.0 6.3E-51 1.4E-55 405.5 24.6 222 187-423 6-235 (351)
78 PRK13650 cbiO cobalt transport 100.0 1.5E-50 3.2E-55 392.4 25.9 222 187-419 4-234 (279)
79 cd03261 ABC_Org_Solvent_Resist 100.0 6.9E-51 1.5E-55 385.2 22.8 215 188-415 1-227 (235)
80 cd03260 ABC_PstB_phosphate_tra 100.0 1.6E-50 3.5E-55 380.7 24.0 213 188-411 1-226 (227)
81 TIGR03265 PhnT2 putative 2-ami 100.0 1E-50 2.2E-55 404.6 23.4 220 187-421 4-231 (353)
82 PRK13643 cbiO cobalt transport 100.0 4.2E-50 9.2E-55 390.9 25.2 226 188-423 2-242 (288)
83 PRK09452 potA putrescine/sperm 100.0 3.9E-50 8.5E-55 402.6 25.4 222 186-422 13-242 (375)
84 TIGR00960 3a0501s02 Type II (G 100.0 2.2E-50 4.8E-55 377.0 21.9 205 188-403 2-216 (216)
85 PRK13637 cbiO cobalt transport 100.0 7.8E-50 1.7E-54 388.8 26.3 220 188-416 3-236 (287)
86 TIGR03258 PhnT 2-aminoethylpho 100.0 2.3E-50 5.1E-55 402.7 23.2 220 185-419 3-233 (362)
87 cd03248 ABCC_TAP TAP, the Tran 100.0 8.3E-50 1.8E-54 375.6 25.6 218 184-403 8-226 (226)
88 cd03263 ABC_subfamily_A The AB 100.0 5.5E-50 1.2E-54 375.2 23.3 213 188-412 1-219 (220)
89 PRK14250 phosphate ABC transpo 100.0 6.9E-50 1.5E-54 379.9 24.1 217 187-416 3-223 (241)
90 PRK10851 sulfate/thiosulfate t 100.0 4.8E-50 1E-54 399.8 24.1 218 187-419 2-231 (353)
91 PRK13635 cbiO cobalt transport 100.0 1.3E-49 2.8E-54 385.8 26.1 219 187-416 5-231 (279)
92 PRK11153 metN DL-methionine tr 100.0 5.2E-50 1.1E-54 398.9 23.8 217 188-415 2-231 (343)
93 PRK13647 cbiO cobalt transport 100.0 1.1E-49 2.3E-54 385.5 25.3 215 187-413 4-226 (274)
94 PRK13651 cobalt transporter AT 100.0 1.2E-49 2.6E-54 390.0 25.0 224 187-420 2-260 (305)
95 PRK13634 cbiO cobalt transport 100.0 1.4E-49 2.9E-54 387.7 25.3 220 188-417 3-238 (290)
96 PRK13646 cbiO cobalt transport 100.0 1.5E-49 3.3E-54 386.7 25.6 224 187-417 2-238 (286)
97 cd03219 ABC_Mj1267_LivG_branch 100.0 8.1E-50 1.8E-54 378.0 22.8 219 188-415 1-233 (236)
98 cd03296 ABC_CysA_sulfate_impor 100.0 1E-49 2.2E-54 378.2 23.5 214 187-415 2-227 (239)
99 cd03226 ABC_cobalt_CbiO_domain 100.0 7.8E-50 1.7E-54 370.4 22.0 201 189-404 1-205 (205)
100 PRK11000 maltose/maltodextrin 100.0 9.6E-50 2.1E-54 400.3 24.2 219 187-420 3-229 (369)
101 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 8E-50 1.7E-54 373.6 21.8 205 188-403 1-218 (218)
102 cd03259 ABC_Carb_Solutes_like 100.0 7.5E-50 1.6E-54 372.6 21.3 205 188-407 1-213 (213)
103 cd03256 ABC_PhnC_transporter A 100.0 1E-49 2.2E-54 378.4 22.5 214 188-413 1-233 (241)
104 PRK13632 cbiO cobalt transport 100.0 2.6E-49 5.5E-54 382.3 25.2 219 187-416 7-233 (271)
105 cd03258 ABC_MetN_methionine_tr 100.0 1.6E-49 3.4E-54 375.4 23.3 217 188-415 2-231 (233)
106 PRK11607 potG putrescine trans 100.0 2.4E-49 5.1E-54 397.5 25.6 221 186-421 18-246 (377)
107 TIGR01186 proV glycine betaine 100.0 6.6E-50 1.4E-54 398.6 21.4 208 196-416 2-221 (363)
108 cd03268 ABC_BcrA_bacitracin_re 100.0 1.6E-49 3.5E-54 369.0 22.4 205 188-407 1-208 (208)
109 PRK13636 cbiO cobalt transport 100.0 2.9E-49 6.4E-54 384.1 25.1 219 187-417 5-234 (283)
110 cd03369 ABCC_NFT1 Domain 2 of 100.0 6.8E-49 1.5E-53 364.6 26.4 203 186-409 5-207 (207)
111 TIGR02315 ABC_phnC phosphonate 100.0 2.1E-49 4.7E-54 376.8 23.5 214 188-413 2-234 (243)
112 PRK11629 lolD lipoprotein tran 100.0 4.2E-49 9.2E-54 372.6 24.9 211 187-408 5-228 (233)
113 PRK13640 cbiO cobalt transport 100.0 4.3E-49 9.4E-54 382.7 25.6 219 187-416 5-234 (282)
114 PRK13537 nodulation ABC transp 100.0 2.1E-49 4.5E-54 388.8 23.1 215 186-414 6-227 (306)
115 TIGR00972 3a0107s01c2 phosphat 100.0 2.1E-49 4.5E-54 378.0 22.4 219 188-415 2-233 (247)
116 cd03265 ABC_DrrA DrrA is the A 100.0 3.3E-49 7.1E-54 370.1 23.2 211 188-412 1-219 (220)
117 PRK14269 phosphate ABC transpo 100.0 2.6E-49 5.7E-54 377.0 22.9 220 187-415 2-231 (246)
118 cd03224 ABC_TM1139_LivF_branch 100.0 3.5E-49 7.5E-54 370.2 23.3 214 188-413 1-220 (222)
119 PRK09536 btuD corrinoid ABC tr 100.0 3.9E-49 8.5E-54 397.7 25.2 217 187-416 3-230 (402)
120 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.4E-49 5.3E-54 376.3 22.3 218 188-415 1-226 (242)
121 PRK14242 phosphate transporter 100.0 3.9E-49 8.5E-54 377.3 23.8 222 186-416 5-239 (253)
122 cd03266 ABC_NatA_sodium_export 100.0 4.3E-49 9.2E-54 368.7 23.5 208 188-407 2-218 (218)
123 cd03264 ABC_drug_resistance_li 100.0 2.9E-49 6.4E-54 368.1 22.1 205 188-407 1-211 (211)
124 PRK14273 phosphate ABC transpo 100.0 7.3E-49 1.6E-53 375.7 24.9 221 187-416 7-240 (254)
125 PRK13642 cbiO cobalt transport 100.0 9.5E-49 2.1E-53 379.5 25.5 219 187-416 4-231 (277)
126 TIGR02211 LolD_lipo_ex lipopro 100.0 6.5E-49 1.4E-53 368.2 23.5 206 188-404 2-220 (221)
127 PRK13652 cbiO cobalt transport 100.0 1E-48 2.3E-53 379.2 25.6 217 187-415 3-228 (277)
128 PRK13644 cbiO cobalt transport 100.0 1.3E-48 2.7E-53 378.0 25.7 216 188-415 2-225 (274)
129 cd03218 ABC_YhbG The ABC trans 100.0 6.2E-49 1.3E-53 371.1 23.0 219 188-415 1-223 (232)
130 PRK13648 cbiO cobalt transport 100.0 1.2E-48 2.5E-53 377.4 25.4 222 187-419 7-236 (269)
131 PRK13633 cobalt transporter AT 100.0 1.2E-48 2.5E-53 379.4 25.0 219 187-416 4-235 (280)
132 PRK15079 oligopeptide ABC tran 100.0 5.3E-49 1.2E-53 389.2 22.9 220 187-416 8-253 (331)
133 cd03225 ABC_cobalt_CbiO_domain 100.0 6.5E-49 1.4E-53 365.7 22.2 203 189-402 1-211 (211)
134 cd03293 ABC_NrtD_SsuB_transpor 100.0 8.6E-49 1.9E-53 367.3 23.0 207 188-410 1-219 (220)
135 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 9.4E-49 2E-53 370.9 23.3 218 188-415 2-222 (236)
136 cd03301 ABC_MalK_N The N-termi 100.0 1.3E-48 2.7E-53 364.2 23.5 205 188-407 1-213 (213)
137 PRK14235 phosphate transporter 100.0 1.1E-48 2.3E-53 377.2 23.8 222 185-415 17-252 (267)
138 PRK09493 glnQ glutamine ABC tr 100.0 9.8E-49 2.1E-53 371.7 23.0 216 188-416 2-227 (240)
139 cd03250 ABCC_MRP_domain1 Domai 100.0 2.3E-48 4.9E-53 360.3 24.7 199 188-402 1-204 (204)
140 PRK10744 pstB phosphate transp 100.0 1E-48 2.3E-53 375.9 23.1 222 185-415 11-245 (260)
141 cd03294 ABC_Pro_Gly_Bertaine T 100.0 4.9E-49 1.1E-53 379.9 20.9 215 189-416 26-252 (269)
142 PRK13649 cbiO cobalt transport 100.0 1.9E-48 4.1E-53 378.0 25.0 219 187-415 2-235 (280)
143 COG1131 CcmA ABC-type multidru 100.0 5.5E-49 1.2E-53 382.9 21.1 215 187-414 4-226 (293)
144 PRK13641 cbiO cobalt transport 100.0 2.1E-48 4.6E-53 378.9 25.0 219 187-415 2-235 (287)
145 PRK10575 iron-hydroxamate tran 100.0 2.1E-48 4.6E-53 374.8 24.5 217 186-415 10-238 (265)
146 PRK13638 cbiO cobalt transport 100.0 2E-48 4.4E-53 376.1 24.4 219 188-419 2-230 (271)
147 COG4555 NatA ABC-type Na+ tran 100.0 2E-49 4.3E-54 351.8 15.7 214 188-414 2-222 (245)
148 PRK14247 phosphate ABC transpo 100.0 1.1E-48 2.5E-53 373.4 22.3 221 187-416 3-236 (250)
149 TIGR01288 nodI ATP-binding ABC 100.0 1.5E-48 3.2E-53 382.8 23.5 214 187-414 4-224 (303)
150 PRK14259 phosphate ABC transpo 100.0 2E-48 4.4E-53 375.6 24.2 221 186-415 12-254 (269)
151 cd03292 ABC_FtsE_transporter F 100.0 2E-48 4.3E-53 363.1 23.2 204 188-403 1-214 (214)
152 PRK13639 cbiO cobalt transport 100.0 2.2E-48 4.7E-53 376.6 24.3 221 188-420 2-232 (275)
153 TIGR03522 GldA_ABC_ATP gliding 100.0 1.3E-48 2.9E-53 382.6 22.9 214 187-414 2-221 (301)
154 PRK13536 nodulation factor exp 100.0 1.4E-48 3E-53 387.4 23.3 214 187-414 41-261 (340)
155 TIGR02673 FtsE cell division A 100.0 1.7E-48 3.8E-53 363.6 22.6 203 188-402 2-214 (214)
156 PRK13645 cbiO cobalt transport 100.0 2.5E-48 5.3E-53 378.9 24.6 221 186-416 5-242 (289)
157 TIGR03411 urea_trans_UrtD urea 100.0 2.3E-48 5E-53 369.5 23.8 220 187-415 2-232 (242)
158 PRK11264 putative amino-acid A 100.0 1.6E-48 3.4E-53 372.5 22.4 221 187-416 3-235 (250)
159 PRK14274 phosphate ABC transpo 100.0 2.9E-48 6.2E-53 372.6 24.3 221 187-416 12-245 (259)
160 PRK11614 livF leucine/isoleuci 100.0 3.2E-48 6.9E-53 367.5 24.0 216 187-415 5-227 (237)
161 PRK10070 glycine betaine trans 100.0 1.9E-48 4.1E-53 392.5 23.7 202 204-416 43-256 (400)
162 PRK10908 cell division protein 100.0 4.8E-48 1E-52 362.7 24.8 206 188-405 2-217 (222)
163 PRK14267 phosphate ABC transpo 100.0 1.3E-48 2.7E-53 373.8 21.3 220 187-415 4-238 (253)
164 PRK11831 putative ABC transpor 100.0 2.3E-48 5E-53 375.3 23.1 216 187-415 7-234 (269)
165 TIGR03410 urea_trans_UrtE urea 100.0 3.2E-48 6.9E-53 365.8 23.5 214 188-413 1-220 (230)
166 TIGR03005 ectoine_ehuA ectoine 100.0 2.6E-48 5.5E-53 371.5 23.1 215 188-415 1-237 (252)
167 PRK10584 putative ABC transpor 100.0 4.1E-48 9E-53 364.6 24.1 209 187-406 6-227 (228)
168 PRK11231 fecE iron-dicitrate t 100.0 4E-48 8.7E-53 370.8 24.1 216 187-415 2-228 (255)
169 PRK13548 hmuV hemin importer A 100.0 6.8E-48 1.5E-52 369.8 25.3 216 187-415 2-231 (258)
170 PRK14237 phosphate transporter 100.0 4.8E-48 1E-52 372.7 24.3 223 185-416 18-253 (267)
171 PRK14240 phosphate transporter 100.0 5.1E-48 1.1E-52 368.9 24.2 221 186-415 2-235 (250)
172 cd03247 ABCC_cytochrome_bd The 100.0 3.9E-48 8.4E-53 351.2 22.1 178 188-407 1-178 (178)
173 PRK14268 phosphate ABC transpo 100.0 4.7E-48 1E-52 371.0 23.8 220 187-415 12-243 (258)
174 PRK10619 histidine/lysine/argi 100.0 3.5E-48 7.5E-53 371.7 22.8 218 186-415 4-242 (257)
175 PRK14245 phosphate ABC transpo 100.0 3.4E-48 7.3E-53 370.2 22.7 221 187-416 3-236 (250)
176 PRK11300 livG leucine/isoleuci 100.0 6.1E-48 1.3E-52 369.4 24.3 222 187-415 5-244 (255)
177 cd03235 ABC_Metallic_Cations A 100.0 2.2E-48 4.7E-53 362.7 20.6 200 189-407 1-213 (213)
178 cd03257 ABC_NikE_OppD_transpor 100.0 4.1E-48 8.9E-53 364.3 22.6 213 188-407 2-228 (228)
179 PRK10253 iron-enterobactin tra 100.0 5.5E-48 1.2E-52 371.9 24.0 216 186-414 6-233 (265)
180 PRK11308 dppF dipeptide transp 100.0 4.6E-48 9.9E-53 382.2 23.9 220 187-416 5-246 (327)
181 PRK14249 phosphate ABC transpo 100.0 7.5E-48 1.6E-52 368.1 24.4 221 187-416 4-237 (251)
182 PRK14238 phosphate transporter 100.0 5.1E-48 1.1E-52 373.2 23.4 222 186-416 23-257 (271)
183 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.1E-47 2.3E-52 357.5 24.6 203 188-407 1-211 (211)
184 PRK11247 ssuB aliphatic sulfon 100.0 1.2E-47 2.6E-52 367.4 25.5 205 186-410 11-219 (257)
185 PRK11124 artP arginine transpo 100.0 8.6E-48 1.9E-52 365.7 24.3 215 187-414 2-230 (242)
186 PRK14239 phosphate transporter 100.0 5.7E-48 1.2E-52 369.0 23.2 221 187-416 5-238 (252)
187 cd03291 ABCC_CFTR1 The CFTR su 100.0 3.2E-47 6.9E-52 368.6 28.6 233 160-415 15-248 (282)
188 PRK14256 phosphate ABC transpo 100.0 7.2E-48 1.6E-52 368.4 23.8 223 186-417 3-239 (252)
189 PRK11022 dppD dipeptide transp 100.0 4.2E-48 9.1E-53 382.5 22.7 222 187-416 3-245 (326)
190 PRK10895 lipopolysaccharide AB 100.0 7.8E-48 1.7E-52 365.7 23.7 220 187-415 3-227 (241)
191 cd03269 ABC_putative_ATPase Th 100.0 5.5E-48 1.2E-52 359.2 22.1 203 188-407 1-210 (210)
192 PRK14236 phosphate transporter 100.0 1.2E-47 2.6E-52 370.9 25.0 222 186-416 24-258 (272)
193 cd03262 ABC_HisP_GlnQ_permease 100.0 5.9E-48 1.3E-52 359.6 22.0 203 188-403 1-213 (213)
194 cd03290 ABCC_SUR1_N The SUR do 100.0 1.6E-47 3.5E-52 358.2 25.0 210 189-402 2-218 (218)
195 PRK14253 phosphate ABC transpo 100.0 8E-48 1.7E-52 367.4 23.3 220 187-415 3-234 (249)
196 COG0410 LivF ABC-type branched 100.0 7.3E-48 1.6E-52 350.5 21.8 222 187-417 3-229 (237)
197 PRK14248 phosphate ABC transpo 100.0 1.5E-47 3.3E-52 369.4 25.1 221 187-416 21-254 (268)
198 PRK11144 modC molybdate transp 100.0 8.4E-48 1.8E-52 384.3 24.1 217 188-422 2-226 (352)
199 PRK14243 phosphate transporter 100.0 1.1E-47 2.3E-52 369.7 23.9 221 187-416 10-250 (264)
200 PRK14251 phosphate ABC transpo 100.0 9.5E-48 2.1E-52 367.3 23.4 221 187-416 4-237 (251)
201 TIGR02769 nickel_nikE nickel i 100.0 9.1E-48 2E-52 370.4 23.4 218 187-414 2-240 (265)
202 PRK10247 putative ABC transpor 100.0 9.5E-48 2.1E-52 361.5 22.8 213 187-411 7-224 (225)
203 TIGR03873 F420-0_ABC_ATP propo 100.0 1.1E-47 2.4E-52 367.9 23.7 214 188-414 2-226 (256)
204 PRK14270 phosphate ABC transpo 100.0 1.4E-47 3E-52 366.2 23.9 221 187-416 4-237 (251)
205 PRK14244 phosphate ABC transpo 100.0 5.5E-48 1.2E-52 369.0 21.1 221 188-417 6-240 (251)
206 COG4175 ProV ABC-type proline/ 100.0 2.9E-48 6.2E-53 365.2 18.7 220 187-417 4-257 (386)
207 cd03246 ABCC_Protease_Secretio 100.0 1.3E-47 2.9E-52 346.2 22.0 172 188-403 1-173 (173)
208 PRK10771 thiQ thiamine transpo 100.0 2.5E-47 5.4E-52 360.3 24.7 212 188-416 2-221 (232)
209 PRK09473 oppD oligopeptide tra 100.0 1.3E-47 2.9E-52 379.3 23.2 222 187-416 12-253 (330)
210 TIGR03415 ABC_choXWV_ATP choli 100.0 1.1E-47 2.4E-52 384.5 22.8 212 192-416 29-256 (382)
211 PRK14262 phosphate ABC transpo 100.0 1.3E-47 2.7E-52 366.2 22.3 221 187-416 3-236 (250)
212 PRK14261 phosphate ABC transpo 100.0 2.4E-47 5.2E-52 365.0 24.1 221 187-416 6-239 (253)
213 TIGR01188 drrA daunorubicin re 100.0 7.6E-48 1.6E-52 377.6 21.1 206 195-414 1-213 (302)
214 PRK14254 phosphate ABC transpo 100.0 3.3E-47 7.1E-52 369.9 24.6 221 186-415 38-270 (285)
215 TIGR01277 thiQ thiamine ABC tr 100.0 4.9E-47 1.1E-51 353.7 24.6 204 188-408 1-212 (213)
216 PRK15093 antimicrobial peptide 100.0 1.5E-47 3.3E-52 379.4 22.5 222 187-416 3-250 (330)
217 PRK14260 phosphate ABC transpo 100.0 1.9E-47 4.1E-52 367.0 22.0 222 186-416 6-245 (259)
218 COG0411 LivG ABC-type branched 100.0 3.3E-48 7.2E-53 355.3 15.8 227 187-419 4-244 (250)
219 PRK14265 phosphate ABC transpo 100.0 5.1E-47 1.1E-51 366.7 24.9 223 185-416 18-260 (274)
220 cd03300 ABC_PotA_N PotA is an 100.0 2.6E-47 5.7E-52 360.1 22.1 214 188-416 1-222 (232)
221 PRK15112 antimicrobial peptide 100.0 3.4E-47 7.3E-52 366.8 23.1 218 187-415 4-240 (267)
222 PRK14271 phosphate ABC transpo 100.0 4.5E-47 9.8E-52 367.4 23.9 221 187-416 21-253 (276)
223 TIGR00968 3a0106s01 sulfate AB 100.0 6E-47 1.3E-51 358.8 24.1 213 188-415 1-221 (237)
224 COG1137 YhbG ABC-type (unclass 100.0 1.2E-48 2.7E-53 346.4 11.6 217 187-416 4-230 (243)
225 PRK14255 phosphate ABC transpo 100.0 4E-47 8.6E-52 363.2 22.8 221 187-416 5-238 (252)
226 PRK14241 phosphate transporter 100.0 4.2E-47 9.1E-52 364.4 22.9 220 187-415 4-243 (258)
227 TIGR01978 sufC FeS assembly AT 100.0 3.5E-47 7.6E-52 361.5 22.2 214 188-413 1-233 (243)
228 PRK11248 tauB taurine transpor 100.0 8.8E-47 1.9E-51 361.4 25.0 205 188-410 2-216 (255)
229 PRK14275 phosphate ABC transpo 100.0 5.2E-47 1.1E-51 368.8 23.7 222 186-416 38-272 (286)
230 PRK14266 phosphate ABC transpo 100.0 4.8E-47 1E-51 362.3 22.9 220 187-415 3-235 (250)
231 PRK14272 phosphate ABC transpo 100.0 5E-47 1.1E-51 362.5 22.3 221 187-416 4-238 (252)
232 PRK11701 phnK phosphonate C-P 100.0 7E-47 1.5E-51 362.8 23.2 221 187-416 6-243 (258)
233 PRK09984 phosphonate/organopho 100.0 8.1E-47 1.8E-51 363.2 23.7 213 187-412 4-240 (262)
234 TIGR03740 galliderm_ABC gallid 100.0 6.9E-47 1.5E-51 355.1 22.7 207 188-411 1-210 (223)
235 PRK13547 hmuV hemin importer A 100.0 9.5E-47 2.1E-51 364.1 23.9 214 188-414 2-244 (272)
236 PRK14258 phosphate ABC transpo 100.0 7.3E-47 1.6E-51 363.3 22.8 222 186-416 6-247 (261)
237 PRK14252 phosphate ABC transpo 100.0 1E-46 2.3E-51 363.0 23.8 222 185-415 14-250 (265)
238 TIGR02982 heterocyst_DevA ABC 100.0 8.2E-47 1.8E-51 353.9 22.2 205 188-403 2-219 (220)
239 TIGR02142 modC_ABC molybdenum 100.0 9.4E-47 2E-51 377.2 23.6 211 192-417 4-224 (354)
240 PRK14263 phosphate ABC transpo 100.0 2E-46 4.3E-51 360.1 24.9 221 187-416 8-247 (261)
241 PRK14246 phosphate ABC transpo 100.0 1E-46 2.2E-51 361.4 21.5 223 186-417 9-244 (257)
242 cd03299 ABC_ModC_like Archeal 100.0 1.6E-46 3.6E-51 355.4 22.4 212 188-415 1-220 (235)
243 cd03228 ABCC_MRP_Like The MRP 100.0 1.9E-46 4.2E-51 338.0 21.7 171 188-402 1-171 (171)
244 PRK14264 phosphate ABC transpo 100.0 3.6E-46 7.9E-51 366.0 23.8 221 186-415 44-290 (305)
245 COG0444 DppD ABC-type dipeptid 100.0 1.3E-46 2.9E-51 358.7 19.5 226 188-424 2-253 (316)
246 cd03297 ABC_ModC_molybdenum_tr 100.0 3.4E-46 7.3E-51 348.3 21.3 200 192-407 5-214 (214)
247 cd03234 ABCG_White The White s 100.0 2.9E-46 6.3E-51 351.6 20.8 211 188-407 4-226 (226)
248 COG4598 HisP ABC-type histidin 100.0 5.1E-47 1.1E-51 330.6 13.6 218 187-418 6-245 (256)
249 cd03229 ABC_Class3 This class 100.0 7.9E-46 1.7E-50 336.1 21.6 172 188-402 1-178 (178)
250 PRK10419 nikE nickel transport 100.0 1.2E-45 2.6E-50 356.1 24.0 221 187-414 3-241 (268)
251 cd03230 ABC_DR_subfamily_A Thi 100.0 8.9E-46 1.9E-50 334.2 21.6 170 188-403 1-173 (173)
252 PRK15056 manganese/iron transp 100.0 1.2E-45 2.6E-50 356.9 23.8 212 187-414 6-230 (272)
253 PRK10418 nikD nickel transport 100.0 7.1E-46 1.5E-50 355.1 21.8 217 187-416 4-232 (254)
254 COG1123 ATPase components of v 100.0 4E-46 8.6E-51 379.2 21.0 220 186-417 279-522 (539)
255 TIGR03608 L_ocin_972_ABC putat 100.0 5.7E-46 1.2E-50 344.5 20.3 196 190-398 1-206 (206)
256 cd03233 ABC_PDR_domain1 The pl 100.0 1.1E-45 2.4E-50 341.8 22.2 190 187-407 3-202 (202)
257 PRK15439 autoinducer 2 ABC tra 100.0 1.1E-45 2.3E-50 387.0 24.7 215 187-414 11-229 (510)
258 TIGR02323 CP_lyasePhnK phospho 100.0 1.7E-45 3.7E-50 352.2 23.6 221 187-416 3-240 (253)
259 COG4559 ABC-type hemin transpo 100.0 1.6E-45 3.4E-50 329.5 19.9 217 188-417 2-233 (259)
260 PRK10261 glutathione transport 100.0 2.1E-45 4.6E-50 392.7 24.5 219 187-416 313-555 (623)
261 cd03213 ABCG_EPDR ABCG transpo 100.0 2E-45 4.3E-50 338.0 20.7 182 187-407 3-194 (194)
262 CHL00131 ycf16 sulfate ABC tra 100.0 4.6E-45 9.9E-50 348.9 23.8 214 187-412 7-239 (252)
263 COG4181 Predicted ABC-type tra 100.0 8.4E-46 1.8E-50 320.6 16.6 209 187-406 6-227 (228)
264 cd03232 ABC_PDR_domain2 The pl 100.0 2.2E-45 4.7E-50 337.3 20.1 181 187-407 3-192 (192)
265 PRK13549 xylose transporter AT 100.0 3.6E-45 7.8E-50 382.9 24.0 218 187-413 5-231 (506)
266 cd03267 ABC_NatA_like Similar 100.0 2.7E-45 5.9E-50 347.3 20.9 194 202-407 34-236 (236)
267 PRK10762 D-ribose transporter 100.0 2.7E-45 5.8E-50 383.4 22.8 218 187-413 4-229 (501)
268 PRK09700 D-allose transporter 100.0 2.5E-45 5.4E-50 384.5 22.5 218 187-413 5-233 (510)
269 cd03214 ABC_Iron-Siderophores_ 100.0 3E-45 6.5E-50 332.9 20.0 177 189-407 1-180 (180)
270 cd03217 ABC_FeS_Assembly ABC-t 100.0 5.7E-45 1.2E-49 336.6 22.1 183 188-410 1-190 (200)
271 PRK03695 vitamin B12-transport 100.0 6.8E-45 1.5E-49 347.0 23.0 209 189-415 2-223 (248)
272 PRK09544 znuC high-affinity zi 100.0 9.8E-45 2.1E-49 346.3 23.9 201 187-415 4-210 (251)
273 cd03215 ABC_Carb_Monos_II This 100.0 4.4E-45 9.5E-50 332.4 20.5 172 187-403 4-182 (182)
274 PRK13538 cytochrome c biogenes 100.0 6.4E-45 1.4E-49 337.3 21.7 197 188-398 2-202 (204)
275 cd03231 ABC_CcmA_heme_exporter 100.0 8.7E-45 1.9E-49 335.6 22.4 195 188-398 1-198 (201)
276 cd03223 ABCD_peroxisomal_ALDP 100.0 7.4E-45 1.6E-49 326.1 20.9 163 188-401 1-163 (166)
277 TIGR01184 ntrCD nitrate transp 100.0 7E-45 1.5E-49 343.2 20.7 192 205-412 1-202 (230)
278 COG4619 ABC-type uncharacteriz 100.0 2.1E-45 4.7E-50 317.1 15.5 204 189-404 5-213 (223)
279 PRK09580 sufC cysteine desulfu 100.0 2.9E-44 6.2E-49 342.6 24.2 213 188-412 2-233 (248)
280 TIGR02770 nickel_nikD nickel i 100.0 6.2E-45 1.3E-49 343.5 19.2 203 204-416 1-217 (230)
281 COG1123 ATPase components of v 100.0 7.8E-45 1.7E-49 369.8 20.7 225 187-420 5-250 (539)
282 PRK13540 cytochrome c biogenes 100.0 1.4E-44 3.1E-49 333.9 20.5 195 188-397 2-198 (200)
283 PRK11288 araG L-arabinose tran 100.0 2.6E-44 5.6E-49 376.0 24.2 214 187-409 4-224 (501)
284 PRK15134 microcin C ABC transp 100.0 8.7E-45 1.9E-49 382.0 20.5 219 187-416 275-517 (529)
285 PRK10938 putative molybdenum t 100.0 1.9E-44 4.1E-49 376.2 22.8 211 187-414 3-224 (490)
286 PRK10982 galactose/methyl gala 100.0 1.2E-44 2.7E-49 377.6 21.2 215 190-413 1-222 (491)
287 PRK13539 cytochrome c biogenes 100.0 3E-44 6.6E-49 333.5 21.3 197 187-400 2-200 (207)
288 TIGR01189 ccmA heme ABC export 100.0 2.2E-44 4.8E-49 332.1 20.0 195 188-397 1-197 (198)
289 cd03216 ABC_Carb_Monos_I This 100.0 7.7E-44 1.7E-48 318.5 22.5 159 188-405 1-162 (163)
290 PRK13543 cytochrome c biogenes 100.0 4.1E-44 8.9E-49 334.3 21.5 198 187-400 11-212 (214)
291 PRK10261 glutathione transport 100.0 3E-44 6.5E-49 383.8 23.0 221 187-415 12-259 (623)
292 TIGR02633 xylG D-xylose ABC tr 100.0 4.9E-44 1.1E-48 374.0 24.1 216 188-412 2-228 (500)
293 PRK15134 microcin C ABC transp 100.0 5.6E-44 1.2E-48 375.8 23.9 220 187-414 5-246 (529)
294 COG4615 PvdE ABC-type sideroph 100.0 1.6E-42 3.5E-47 334.0 31.6 386 3-407 140-530 (546)
295 COG4178 ABC-type uncharacteriz 100.0 1.4E-41 3E-46 350.1 40.3 377 7-400 203-588 (604)
296 COG1129 MglA ABC-type sugar tr 100.0 2.2E-43 4.8E-48 357.0 25.3 214 187-409 8-229 (500)
297 TIGR02324 CP_lyasePhnL phospho 100.0 1.2E-43 2.6E-48 333.2 21.5 201 188-398 2-222 (224)
298 PRK13549 xylose transporter AT 100.0 6.1E-44 1.3E-48 373.6 21.4 220 187-413 259-493 (506)
299 TIGR03269 met_CoM_red_A2 methy 100.0 6.7E-44 1.5E-48 374.6 21.1 220 187-413 279-516 (520)
300 TIGR03269 met_CoM_red_A2 methy 100.0 1.2E-43 2.6E-48 372.7 21.5 213 188-413 1-257 (520)
301 PRK09700 D-allose transporter 100.0 1.6E-43 3.5E-48 370.9 21.8 212 187-409 265-493 (510)
302 TIGR01166 cbiO cobalt transpor 100.0 1.1E-43 2.5E-48 325.2 17.9 176 202-388 5-189 (190)
303 TIGR01257 rim_protein retinal- 100.0 2.5E-43 5.4E-48 405.0 25.0 218 186-415 927-1150(2272)
304 COG4525 TauB ABC-type taurine 100.0 1.5E-43 3.3E-48 312.7 17.2 208 187-410 3-220 (259)
305 COG4608 AppF ABC-type oligopep 100.0 1E-43 2.2E-48 332.2 16.3 188 187-417 4-202 (268)
306 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4.9E-43 1.1E-47 329.3 21.0 195 188-407 23-224 (224)
307 COG4161 ArtP ABC-type arginine 100.0 1.9E-43 4E-48 303.3 15.3 216 187-415 2-231 (242)
308 PRK10535 macrolide transporter 100.0 1.6E-42 3.4E-47 371.9 26.2 216 187-413 4-231 (648)
309 TIGR03771 anch_rpt_ABC anchore 100.0 5E-43 1.1E-47 329.0 19.3 189 210-415 1-202 (223)
310 TIGR02633 xylG D-xylose ABC tr 100.0 8.4E-43 1.8E-47 364.7 22.8 219 187-412 257-490 (500)
311 PRK13546 teichoic acids export 100.0 1.3E-42 2.8E-47 333.7 22.0 205 187-415 4-233 (264)
312 COG4604 CeuD ABC-type enteroch 100.0 7.6E-44 1.6E-48 315.1 12.0 216 188-416 2-227 (252)
313 COG4172 ABC-type uncharacteriz 100.0 1.2E-42 2.6E-47 336.0 20.8 223 186-419 275-521 (534)
314 PRK13541 cytochrome c biogenes 100.0 1.2E-42 2.7E-47 319.7 19.6 189 188-395 2-192 (195)
315 TIGR01257 rim_protein retinal- 100.0 1.3E-42 2.9E-47 399.0 24.2 218 186-415 1936-2160(2272)
316 COG4148 ModC ABC-type molybdat 100.0 5.2E-43 1.1E-47 324.6 16.4 198 206-416 15-220 (352)
317 PRK10762 D-ribose transporter 100.0 1.9E-42 4E-47 362.0 21.0 213 187-413 257-483 (501)
318 COG3845 ABC-type uncharacteriz 100.0 3.1E-42 6.7E-47 342.3 21.2 213 187-408 4-223 (501)
319 COG4152 ABC-type uncharacteriz 100.0 4.8E-43 1E-47 319.4 14.1 215 187-414 2-219 (300)
320 PRK13545 tagH teichoic acids e 100.0 9.1E-42 2E-46 348.6 24.2 205 187-415 21-233 (549)
321 PRK11288 araG L-arabinose tran 100.0 2.4E-42 5.2E-47 361.2 20.4 214 187-413 257-484 (501)
322 TIGR01187 potA spermidine/putr 100.0 2.6E-42 5.6E-47 341.4 18.6 185 220-417 1-193 (325)
323 PLN03211 ABC transporter G-25; 100.0 3.2E-42 6.9E-47 368.5 20.2 201 202-413 81-295 (659)
324 PRK15439 autoinducer 2 ABC tra 100.0 9.8E-42 2.1E-46 357.1 20.1 215 187-415 268-493 (510)
325 PRK15064 ABC transporter ATP-b 100.0 2.2E-41 4.8E-46 356.2 22.7 202 186-414 318-525 (530)
326 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.1E-41 4.5E-46 322.3 20.3 194 195-412 1-205 (246)
327 PRK15064 ABC transporter ATP-b 100.0 2.5E-41 5.5E-46 355.8 22.8 209 188-413 2-241 (530)
328 PRK10982 galactose/methyl gala 100.0 3.4E-41 7.3E-46 351.7 20.5 214 187-411 250-477 (491)
329 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7.5E-41 1.6E-45 353.6 23.1 210 187-413 4-247 (552)
330 PRK11819 putative ABC transpor 100.0 3.3E-41 7.2E-46 356.5 20.3 209 187-412 6-248 (556)
331 TIGR00955 3a01204 The Eye Pigm 100.0 4.1E-41 9E-46 359.3 19.8 205 201-413 37-255 (617)
332 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.7E-41 5.8E-46 322.9 16.4 202 191-407 4-220 (255)
333 PRK10938 putative molybdenum t 100.0 4.3E-41 9.2E-46 351.0 19.4 210 186-407 259-485 (490)
334 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.4E-40 3E-45 291.4 19.5 143 188-402 1-144 (144)
335 PRK15177 Vi polysaccharide exp 100.0 8.9E-41 1.9E-45 311.5 18.5 185 204-412 2-190 (213)
336 TIGR00956 3a01205 Pleiotropic 100.0 1.7E-40 3.6E-45 379.9 23.1 214 187-411 759-990 (1394)
337 PRK11819 putative ABC transpor 100.0 8.1E-40 1.7E-44 345.9 22.2 206 186-416 323-535 (556)
338 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.1E-39 2.4E-44 344.7 21.9 202 186-413 321-530 (552)
339 COG1101 PhnK ABC-type uncharac 100.0 4.6E-40 1E-44 294.9 16.1 216 189-406 3-230 (263)
340 COG4172 ABC-type uncharacteriz 100.0 7.2E-40 1.6E-44 316.8 17.4 223 187-417 6-250 (534)
341 COG1119 ModF ABC-type molybden 100.0 7.1E-40 1.5E-44 300.5 16.5 210 186-408 30-256 (257)
342 PRK13409 putative ATPase RIL; 100.0 2.2E-39 4.8E-44 342.6 22.4 193 187-408 340-536 (590)
343 COG4674 Uncharacterized ABC-ty 100.0 6.1E-40 1.3E-44 289.8 14.3 219 187-418 5-239 (249)
344 PRK11147 ABC transporter ATPas 100.0 5.5E-39 1.2E-43 344.2 23.6 201 187-412 319-526 (635)
345 cd00267 ABC_ATPase ABC (ATP-bi 100.0 7.3E-39 1.6E-43 284.5 20.4 154 190-402 2-157 (157)
346 PRK10636 putative ABC transpor 100.0 6.3E-39 1.4E-43 343.3 22.1 200 186-412 311-515 (638)
347 cd03222 ABC_RNaseL_inhibitor T 100.0 7.4E-39 1.6E-43 289.0 17.9 151 191-410 4-159 (177)
348 PLN03073 ABC transporter F fam 100.0 1.2E-38 2.5E-43 343.0 22.6 201 186-411 507-711 (718)
349 COG0396 sufC Cysteine desulfur 100.0 4.2E-38 9.2E-43 285.6 20.9 214 187-411 3-231 (251)
350 PLN03140 ABC transporter G fam 100.0 5.2E-38 1.1E-42 358.7 24.4 214 187-410 867-1106(1470)
351 PRK10636 putative ABC transpor 100.0 5.2E-38 1.1E-42 336.2 22.7 207 188-411 2-233 (638)
352 cd03238 ABC_UvrA The excision 100.0 1.4E-37 3E-42 280.5 19.3 155 202-403 8-166 (176)
353 COG4167 SapF ABC-type antimicr 100.0 3.2E-38 7E-43 276.2 14.0 219 188-416 5-241 (267)
354 PRK11147 ABC transporter ATPas 100.0 4.2E-37 9.1E-42 329.7 21.6 207 187-412 3-241 (635)
355 PRK13409 putative ATPase RIL; 100.0 5.7E-38 1.2E-42 332.0 14.4 193 191-401 77-287 (590)
356 COG4136 ABC-type uncharacteriz 100.0 2.7E-37 5.8E-42 262.4 14.4 197 187-398 2-207 (213)
357 TIGR00956 3a01205 Pleiotropic 100.0 3.7E-37 8E-42 352.5 18.7 203 202-412 74-298 (1394)
358 COG0488 Uup ATPase components 100.0 1.9E-36 4.1E-41 313.4 19.9 207 187-411 3-237 (530)
359 COG1134 TagH ABC-type polysacc 100.0 2.7E-36 5.8E-41 277.3 17.9 191 202-416 40-238 (249)
360 KOG0060 Long-chain acyl-CoA tr 100.0 3.6E-34 7.7E-39 288.0 33.3 364 26-400 242-641 (659)
361 COG4107 PhnK ABC-type phosphon 100.0 4E-36 8.7E-41 261.1 15.5 218 187-416 6-243 (258)
362 PLN03140 ABC transporter G fam 100.0 1.1E-36 2.3E-41 347.9 15.1 209 202-413 178-426 (1470)
363 COG4586 ABC-type uncharacteriz 100.0 1.3E-36 2.8E-41 281.5 12.4 205 203-415 38-247 (325)
364 PLN03073 ABC transporter F fam 100.0 7E-36 1.5E-40 321.6 19.1 218 186-410 176-427 (718)
365 KOG0061 Transporter, ABC super 100.0 1.8E-35 3.9E-40 313.7 19.1 218 186-413 24-259 (613)
366 COG4133 CcmA ABC-type transpor 100.0 6.8E-36 1.5E-40 263.3 11.7 189 188-390 3-194 (209)
367 PF00005 ABC_tran: ABC transpo 100.0 2.8E-35 6E-40 255.0 12.3 136 205-356 1-137 (137)
368 cd03270 ABC_UvrA_I The excisio 100.0 4.2E-34 9.2E-39 268.9 16.7 190 202-407 8-226 (226)
369 COG0488 Uup ATPase components 100.0 4.6E-33 9.9E-38 288.3 23.4 200 186-412 320-523 (530)
370 KOG0059 Lipid exporter ABCA1 a 100.0 4.7E-34 1E-38 314.8 15.8 219 186-416 563-789 (885)
371 COG4778 PhnL ABC-type phosphon 100.0 1.1E-33 2.4E-38 245.0 11.0 203 187-400 4-227 (235)
372 cd03278 ABC_SMC_barmotin Barmo 100.0 5.1E-33 1.1E-37 256.0 14.4 164 206-400 14-190 (197)
373 cd03271 ABC_UvrA_II The excisi 100.0 3.6E-32 7.8E-37 259.4 15.9 194 203-409 9-261 (261)
374 cd03272 ABC_SMC3_euk Eukaryoti 100.0 4.1E-31 8.9E-36 251.2 15.2 189 187-399 3-234 (243)
375 cd03279 ABC_sbcCD SbcCD and ot 100.0 5E-31 1.1E-35 245.9 13.6 190 187-402 5-210 (213)
376 COG4138 BtuD ABC-type cobalami 100.0 7.4E-32 1.6E-36 234.7 5.5 210 188-416 4-223 (248)
377 COG1129 MglA ABC-type sugar tr 100.0 8.3E-30 1.8E-34 258.3 19.5 216 187-411 263-487 (500)
378 KOG0064 Peroxisomal long-chain 100.0 1.2E-28 2.6E-33 245.2 26.0 361 22-398 276-681 (728)
379 cd03273 ABC_SMC2_euk Eukaryoti 100.0 3.2E-30 7E-35 246.4 14.2 204 187-399 5-242 (251)
380 cd03240 ABC_Rad50 The catalyti 100.0 1.6E-29 3.4E-34 234.1 13.4 163 209-401 17-198 (204)
381 cd03274 ABC_SMC4_euk Eukaryoti 100.0 3.9E-30 8.4E-35 239.4 5.8 186 187-400 5-204 (212)
382 KOG0927 Predicted transporter 100.0 1.8E-29 3.9E-34 252.5 9.4 196 186-406 388-587 (614)
383 PRK00635 excinuclease ABC subu 100.0 1.1E-27 2.3E-32 272.5 19.0 213 187-414 600-906 (1809)
384 KOG0065 Pleiotropic drug resis 100.0 1.3E-28 2.8E-33 268.0 9.2 201 200-410 802-1017(1391)
385 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.1E-27 2.5E-32 228.2 13.3 202 187-400 3-233 (247)
386 PRK00349 uvrA excinuclease ABC 99.9 2.2E-27 4.8E-32 259.9 17.4 103 316-418 818-931 (943)
387 COG3845 ABC-type uncharacteriz 99.9 4.3E-26 9.3E-31 227.3 23.3 216 186-411 256-489 (501)
388 COG4170 SapD ABC-type antimicr 99.9 9.8E-27 2.1E-31 208.2 10.8 221 188-416 4-250 (330)
389 KOG0062 ATPase component of AB 99.9 2.3E-26 5.1E-31 229.1 13.6 196 185-405 360-559 (582)
390 TIGR00630 uvra excinuclease AB 99.9 2.3E-25 5E-30 243.6 22.4 97 316-412 816-923 (924)
391 COG1245 Predicted ATPase, RNas 99.9 8E-26 1.7E-30 222.2 15.3 170 204-399 351-530 (591)
392 KOG0927 Predicted transporter 99.9 4.2E-26 9.1E-31 228.5 12.9 222 185-413 73-308 (614)
393 cd03276 ABC_SMC6_euk Eukaryoti 99.9 4.9E-26 1.1E-30 209.7 12.3 172 205-402 12-192 (198)
394 KOG0066 eIF2-interacting prote 99.9 2.8E-25 6.1E-30 216.9 12.3 192 186-405 585-781 (807)
395 KOG0062 ATPase component of AB 99.9 5E-25 1.1E-29 219.7 9.2 200 185-412 78-283 (582)
396 KOG2355 Predicted ABC-type tra 99.9 5E-23 1.1E-27 183.9 13.8 204 185-405 11-228 (291)
397 cd03239 ABC_SMC_head The struc 99.9 4.8E-23 1E-27 186.6 13.9 85 310-400 83-172 (178)
398 cd03280 ABC_MutS2 MutS2 homolo 99.9 4.9E-23 1.1E-27 190.2 11.4 146 204-407 16-172 (200)
399 cd03277 ABC_SMC5_euk Eukaryoti 99.9 1.1E-22 2.4E-27 189.4 12.3 180 206-402 15-211 (213)
400 cd03241 ABC_RecN RecN ATPase i 99.9 1E-21 2.2E-26 190.3 15.5 76 327-402 170-249 (276)
401 KOG0065 Pleiotropic drug resis 99.9 3.3E-22 7.2E-27 218.3 12.1 202 202-413 128-350 (1391)
402 COG1245 Predicted ATPase, RNas 99.9 1.6E-22 3.6E-27 199.0 7.8 189 192-399 79-287 (591)
403 COG2401 ABC-type ATPase fused 99.9 2E-21 4.3E-26 189.4 15.1 197 184-404 354-588 (593)
404 cd03227 ABC_Class2 ABC-type Cl 99.8 4.9E-21 1.1E-25 170.9 10.9 136 208-400 14-155 (162)
405 PRK00635 excinuclease ABC subu 99.8 1.1E-20 2.3E-25 215.9 15.4 106 316-421 1687-1803(1809)
406 cd03285 ABC_MSH2_euk MutS2 hom 99.8 5.6E-21 1.2E-25 179.1 9.5 152 202-408 17-175 (222)
407 COG0178 UvrA Excinuclease ATPa 99.8 3E-20 6.4E-25 194.1 14.0 103 316-418 810-923 (935)
408 cd03283 ABC_MutS-like MutS-lik 99.8 2.3E-20 4.9E-25 172.1 8.0 143 203-398 15-163 (199)
409 cd03242 ABC_RecF RecF is a rec 99.8 3.1E-19 6.6E-24 172.4 15.0 76 325-403 181-269 (270)
410 cd03243 ABC_MutS_homologs The 99.8 3E-20 6.6E-25 171.8 7.5 154 207-412 21-177 (202)
411 TIGR00630 uvra excinuclease AB 99.8 3.1E-19 6.6E-24 195.8 11.1 100 316-415 475-584 (924)
412 PRK00349 uvrA excinuclease ABC 99.8 2E-19 4.3E-24 197.6 8.0 105 309-415 472-586 (943)
413 cd01128 rho_factor Transcripti 99.8 5.6E-19 1.2E-23 167.7 9.1 183 210-404 11-212 (249)
414 KOG0063 RNAse L inhibitor, ABC 99.7 1.3E-17 2.7E-22 163.5 13.4 181 195-400 343-532 (592)
415 TIGR02858 spore_III_AA stage I 99.7 1.5E-17 3.3E-22 159.6 13.3 142 216-413 112-268 (270)
416 KOG0066 eIF2-interacting prote 99.7 8.7E-19 1.9E-23 171.8 3.9 204 187-408 264-493 (807)
417 cd03282 ABC_MSH4_euk MutS4 hom 99.7 2E-17 4.2E-22 153.0 11.2 138 202-391 16-156 (204)
418 cd00820 PEPCK_HprK Phosphoenol 99.7 1.3E-17 2.7E-22 137.0 6.0 76 203-286 3-78 (107)
419 cd03284 ABC_MutS1 MutS1 homolo 99.7 3.9E-17 8.4E-22 152.5 10.1 154 203-413 19-180 (216)
420 PF02463 SMC_N: RecF/RecN/SMC 99.7 3.6E-16 7.8E-21 146.3 9.9 73 327-399 136-212 (220)
421 PRK00064 recF recombination pr 99.7 1.7E-15 3.6E-20 152.1 15.1 76 326-403 272-359 (361)
422 TIGR00606 rad50 rad50. This fa 99.6 1.4E-15 3E-20 175.3 13.6 119 274-399 1153-1289(1311)
423 cd03281 ABC_MSH5_euk MutS5 hom 99.6 1E-14 2.2E-19 135.9 13.2 134 204-392 18-160 (213)
424 TIGR01069 mutS2 MutS2 family p 99.6 4.5E-15 9.8E-20 161.3 11.7 152 187-391 295-450 (771)
425 smart00534 MUTSac ATPase domai 99.6 2.8E-15 6.1E-20 136.7 6.5 79 324-403 58-139 (185)
426 PHA02562 46 endonuclease subun 99.6 3.6E-15 7.7E-20 158.5 7.0 91 312-403 447-555 (562)
427 PRK07721 fliI flagellum-specif 99.5 1.8E-13 3.9E-18 139.6 16.5 175 203-410 147-339 (438)
428 KOG0063 RNAse L inhibitor, ABC 99.5 9.5E-15 2.1E-19 143.5 5.9 170 213-399 98-287 (592)
429 TIGR00634 recN DNA repair prot 99.5 6.2E-14 1.3E-18 148.7 9.6 77 326-402 439-519 (563)
430 PF00664 ABC_membrane: ABC tra 99.5 2.2E-12 4.8E-17 121.6 18.0 140 3-142 134-275 (275)
431 PTZ00132 GTP-binding nuclear p 99.5 7.3E-14 1.6E-18 130.2 7.2 44 331-374 156-204 (215)
432 PRK10869 recombination and rep 99.5 2.1E-13 4.4E-18 143.9 10.3 76 327-402 430-509 (553)
433 PRK00409 recombination and DNA 99.4 9E-13 2E-17 143.8 13.3 78 325-404 388-468 (782)
434 PRK14079 recF recombination pr 99.4 9.4E-13 2E-17 131.6 12.3 77 326-407 262-347 (349)
435 cd03287 ABC_MSH3_euk MutS3 hom 99.4 5.6E-13 1.2E-17 124.7 9.8 137 202-391 18-159 (222)
436 PRK13695 putative NTPase; Prov 99.4 9.4E-13 2E-17 118.8 6.8 80 324-406 75-156 (174)
437 COG0178 UvrA Excinuclease ATPa 99.4 3E-12 6.5E-17 134.8 11.3 105 316-420 469-583 (935)
438 TIGR00618 sbcc exonuclease Sbc 99.3 3.4E-12 7.4E-17 144.7 10.4 79 323-401 946-1036(1042)
439 PRK08533 flagellar accessory p 99.3 1.3E-11 2.9E-16 116.3 12.6 157 188-399 8-184 (230)
440 PRK01156 chromosome segregatio 99.3 9.7E-12 2.1E-16 139.2 10.4 76 324-399 798-883 (895)
441 TIGR02788 VirB11 P-type DNA tr 99.3 4.6E-12 1E-16 124.7 6.9 143 208-413 137-280 (308)
442 PRK03918 chromosome segregatio 99.3 9.2E-12 2E-16 139.2 9.8 77 324-400 785-868 (880)
443 cd01124 KaiC KaiC is a circadi 99.2 3.5E-11 7.7E-16 109.2 10.1 81 319-399 63-163 (187)
444 PRK13830 conjugal transfer pro 99.2 4.8E-11 1E-15 131.6 13.1 68 342-409 649-728 (818)
445 TIGR02168 SMC_prok_B chromosom 99.2 1.7E-11 3.7E-16 140.6 8.7 77 323-399 1085-1165(1179)
446 TIGR03238 dnd_assoc_3 dnd syst 99.2 5.6E-12 1.2E-16 127.8 4.1 67 203-272 20-87 (504)
447 cd03286 ABC_MSH6_euk MutS6 hom 99.2 6.7E-11 1.5E-15 110.4 10.5 137 202-391 17-158 (218)
448 PRK06793 fliI flagellum-specif 99.2 1.1E-10 2.3E-15 118.6 11.5 168 187-408 130-305 (432)
449 PF13304 AAA_21: AAA domain; P 99.2 3.5E-11 7.5E-16 112.8 7.1 64 326-389 235-302 (303)
450 PRK10733 hflB ATP-dependent me 99.2 9.7E-12 2.1E-16 133.7 2.9 197 11-240 5-210 (644)
451 TIGR02169 SMC_prok_A chromosom 99.1 9.9E-11 2.1E-15 134.4 9.2 76 325-400 1072-1151(1164)
452 cd01120 RecA-like_NTPases RecA 99.1 4.1E-10 8.8E-15 99.0 10.8 129 217-389 1-140 (165)
453 COG3910 Predicted ATPase [Gene 99.1 3E-10 6.4E-15 101.1 9.7 81 326-407 128-210 (233)
454 PRK10246 exonuclease subunit S 99.1 1.5E-10 3.3E-15 130.9 10.0 78 323-400 945-1032(1047)
455 cd01131 PilT Pilus retraction 99.1 3.9E-10 8.5E-15 103.9 8.4 119 217-399 3-122 (198)
456 PRK02224 chromosome segregatio 99.0 4.4E-10 9.6E-15 125.8 8.8 77 325-401 779-869 (880)
457 smart00382 AAA ATPases associa 99.0 1E-08 2.2E-13 86.8 14.8 117 214-385 1-125 (148)
458 PRK06067 flagellar accessory p 99.0 6.8E-09 1.5E-13 98.1 13.9 74 327-400 100-187 (234)
459 PRK06002 fliI flagellum-specif 98.9 1.8E-09 3.9E-14 109.9 8.0 86 185-272 137-229 (450)
460 TIGR00767 rho transcription te 98.9 4E-09 8.6E-14 105.5 9.3 81 155-241 103-194 (415)
461 PRK00300 gmk guanylate kinase; 98.9 5.8E-09 1.3E-13 96.3 8.2 66 213-283 3-80 (205)
462 PRK13891 conjugal transfer pro 98.8 1.8E-07 3.9E-12 104.0 18.5 53 338-390 680-734 (852)
463 TIGR02655 circ_KaiC circadian 98.8 6.6E-10 1.4E-14 116.0 -1.0 156 211-399 17-190 (484)
464 PRK07196 fliI flagellum-specif 98.8 5E-09 1.1E-13 106.6 4.8 81 203-284 144-234 (434)
465 TIGR00611 recf recF protein. A 98.7 1.2E-08 2.6E-13 102.7 6.3 63 326-390 274-345 (365)
466 PRK06995 flhF flagellar biosyn 98.7 2E-08 4.2E-13 103.6 7.3 60 207-285 248-307 (484)
467 cd01130 VirB11-like_ATPase Typ 98.7 1.2E-08 2.7E-13 93.0 4.5 77 204-283 14-93 (186)
468 TIGR01026 fliI_yscN ATPase Fli 98.7 2.2E-07 4.8E-12 95.3 13.0 184 202-410 151-344 (440)
469 TIGR01420 pilT_fam pilus retra 98.7 8.2E-08 1.8E-12 96.0 9.1 121 212-396 119-240 (343)
470 cd01125 repA Hexameric Replica 98.6 7.4E-08 1.6E-12 91.4 8.0 44 342-386 108-159 (239)
471 PF09818 ABC_ATPase: Predicted 98.6 4E-07 8.6E-12 91.5 13.0 172 193-404 227-417 (448)
472 PRK01889 GTPase RsgA; Reviewed 98.6 3.6E-08 7.8E-13 98.9 5.4 81 204-287 184-264 (356)
473 cd02023 UMPK Uridine monophosp 98.6 2.1E-08 4.6E-13 92.2 3.3 109 217-361 1-114 (198)
474 COG0419 SbcC ATPase involved i 98.6 1.2E-07 2.5E-12 106.5 9.7 79 323-401 811-898 (908)
475 PRK13898 type IV secretion sys 98.6 2.3E-06 4.9E-11 94.9 18.3 49 341-389 638-688 (800)
476 TIGR02524 dot_icm_DotB Dot/Icm 98.6 1.1E-07 2.4E-12 95.3 7.1 112 213-336 132-268 (358)
477 PRK08149 ATP synthase SpaL; Va 98.6 7.2E-08 1.6E-12 98.0 5.8 69 203-272 140-215 (428)
478 PRK10078 ribose 1,5-bisphospho 98.6 8.5E-08 1.8E-12 87.4 5.6 55 215-272 2-56 (186)
479 PRK05399 DNA mismatch repair p 98.6 3.6E-07 7.8E-12 101.4 11.5 67 327-394 666-738 (854)
480 TIGR02680 conserved hypothetic 98.5 1.4E-07 3E-12 109.4 7.8 64 322-387 1242-1317(1353)
481 PRK09825 idnK D-gluconate kina 98.5 1.1E-07 2.4E-12 86.0 4.6 65 214-284 2-68 (176)
482 TIGR03881 KaiC_arch_4 KaiC dom 98.4 2.2E-07 4.8E-12 87.3 5.5 58 211-272 16-77 (229)
483 TIGR00235 udk uridine kinase. 98.4 1.2E-07 2.6E-12 88.0 3.2 29 213-241 4-32 (207)
484 PLN03210 Resistant to P. syrin 98.4 1.3E-06 2.8E-11 100.5 11.8 44 207-250 199-243 (1153)
485 TIGR02322 phosphon_PhnN phosph 98.4 5.8E-07 1.3E-11 81.1 6.8 62 215-277 1-78 (179)
486 TIGR02903 spore_lon_C ATP-depe 98.4 9.7E-07 2.1E-11 94.7 9.1 110 214-372 174-291 (615)
487 PRK06315 type III secretion sy 98.4 3.7E-07 7.9E-12 93.3 4.8 82 203-285 153-252 (442)
488 PRK13873 conjugal transfer ATP 98.3 8.3E-06 1.8E-10 90.6 14.8 63 340-402 630-704 (811)
489 cd00009 AAA The AAA+ (ATPases 98.3 4.4E-06 9.5E-11 71.2 9.9 54 333-387 72-131 (151)
490 PRK10416 signal recognition pa 98.3 5.5E-07 1.2E-11 88.9 4.7 71 213-283 112-189 (318)
491 PRK07594 type III secretion sy 98.3 6.9E-07 1.5E-11 91.1 5.3 66 186-253 128-193 (433)
492 PLN02796 D-glycerate 3-kinase 98.3 2.7E-07 5.8E-12 91.0 1.8 61 203-263 80-151 (347)
493 PRK09862 putative ATP-dependen 98.3 7.1E-07 1.5E-11 92.9 4.8 63 190-254 187-249 (506)
494 TIGR00606 rad50 rad50. This fa 98.3 2.2E-06 4.9E-11 99.7 9.2 143 187-345 5-152 (1311)
495 cd01876 YihA_EngB The YihA (En 98.3 6.4E-06 1.4E-10 72.1 10.0 49 321-373 116-169 (170)
496 PF13555 AAA_29: P-loop contai 98.3 1.2E-06 2.7E-11 64.6 4.4 39 205-243 12-51 (62)
497 cd01136 ATPase_flagellum-secre 98.3 1.6E-06 3.5E-11 85.4 6.5 59 193-253 49-107 (326)
498 TIGR00101 ureG urease accessor 98.3 1.5E-06 3.2E-11 80.2 5.8 57 217-274 3-59 (199)
499 PRK09270 nucleoside triphospha 98.2 1E-06 2.2E-11 83.1 4.6 33 214-246 32-64 (229)
500 TIGR00152 dephospho-CoA kinase 98.2 3.1E-06 6.6E-11 77.2 7.5 69 331-401 61-133 (188)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-93 Score=731.88 Aligned_cols=416 Identities=41% Similarity=0.597 Sum_probs=382.1
Q ss_pred EeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHH
Q 014366 2 ATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHS 81 (426)
Q Consensus 2 ~~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 81 (426)
.++|+++||.|++++++.+|++.++..+++++.++.+++.+++.++.+...+|.+++++|||+|+.|..+.++|.+..++
T Consensus 280 ~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~ 359 (716)
T KOG0058|consen 280 LGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLRE 359 (716)
T ss_pred HHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 82 DLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (426)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ 160 (426)
.++...|.......+.....+. ....+.++++|++++..|.+|.|.+++|+.|...+-.++..++..|.++.++..|.+
T Consensus 360 ~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~ 439 (716)
T KOG0058|consen 360 VLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASE 439 (716)
T ss_pred HHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 8777655554443333333332 345677888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCC-CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 161 RLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 161 ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
|++|++|.+|..... +...+....+.|+|+||+|+||.++ .++|+|+||+|+|||+||||||||+||||++++|.++|
T Consensus 440 rvFel~dr~P~i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 440 RVFELMDRKPRIPLT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred HHHHHhccCCCCCCC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 999999998876544 2222224678999999999999763 46999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc
Q 014366 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (426)
Q Consensus 240 ~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 319 (426)
+|++|+|.+||+|++++++..||++||+|.|||.||++||+|||.||.+ +.++++++.+++++++++|+..+|+||||
T Consensus 519 ~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T 596 (716)
T KOG0058|consen 519 DPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD--NATDEEIEAAAKMANAHEFITNFPDGYNT 596 (716)
T ss_pred CCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCcccccc
Confidence 9999999999999999999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEe
Q 014366 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 320 ~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~ 399 (426)
.+||+|.+|||||||||||||||++||.||||||+||+||.++|..|+++|.+..+++|||+|+||+++++.||+|+|++
T Consensus 597 ~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~ 676 (716)
T KOG0058|consen 597 VVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVID 676 (716)
T ss_pred ccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred CCEEEEeccccccccCcchhh
Q 014366 400 NGKLEELNRSTLLGSNHDSLV 420 (426)
Q Consensus 400 ~G~i~e~g~~~~l~~~~~~l~ 420 (426)
+|+++|.|+|++|.++++.++
T Consensus 677 ~G~V~E~G~h~eLl~~~~gly 697 (716)
T KOG0058|consen 677 KGRVVEMGTHDELLSKPNGLY 697 (716)
T ss_pred CCeEEecccHHHHhhCcccHH
Confidence 999999999999988875443
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.4e-87 Score=714.25 Aligned_cols=412 Identities=37% Similarity=0.538 Sum_probs=384.8
Q ss_pred EeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHH
Q 014366 2 ATQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHS 81 (426)
Q Consensus 2 ~~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 81 (426)
.++|+++||.|++++++.+|+++++..++.+.+++..++..+..++.++.+.|+++|++|||+.+.|.++..+|++...+
T Consensus 285 l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~ 364 (709)
T COG2274 285 LAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAK 364 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 82 DLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (426)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ 160 (426)
..+..++..........+..++ .+..++++|+|+++|..|.+|+|.+++|.++...+..|+..+.+.+.+++++..+.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~ 444 (709)
T COG2274 365 QVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALE 444 (709)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877766665555544 345788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 161 RLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 161 ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
|+.++++.|+|..........+...++|+++||+|+|+..++++|+|+||+|++||++||||+||||||||+|+|+|+|+
T Consensus 445 rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 445 RLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred HHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 99999999887543322233445578999999999999876689999999999999999999999999999999999999
Q ss_pred CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccc
Q 014366 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (426)
Q Consensus 241 p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~ 320 (426)
|++|+|++||.|+++++...+|++||||+||+.+|++||+||++++.+ +.+++++.++++.+++++|+.++|.||+|.
T Consensus 525 p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p--~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~ 602 (709)
T COG2274 525 PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP--EATDEEIIEAAQLAGAHEFIENLPMGYDTP 602 (709)
T ss_pred CCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhcccccccc
Confidence 999999999999999999999999999999999999999999999986 456899999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 321 ~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+||+|.+||||||||++|||||+++|+|||||||||+||+++|+.|.+.|.+...++|+|+||||+++++.||||+||++
T Consensus 603 v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~ 682 (709)
T COG2274 603 VGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQ 682 (709)
T ss_pred cccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccC
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CEEEEeccccccccC
Q 014366 401 GKLEELNRSTLLGSN 415 (426)
Q Consensus 401 G~i~e~g~~~~l~~~ 415 (426)
|+|+|+|+++++.+.
T Consensus 683 Gkiv~~gs~~ell~~ 697 (709)
T COG2274 683 GKIVEQGSHEELLAQ 697 (709)
T ss_pred CceeccCCHHHHHHh
Confidence 999999999888765
No 3
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.6e-83 Score=689.25 Aligned_cols=411 Identities=34% Similarity=0.484 Sum_probs=376.0
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
+-|+++|.++++++++.|++++......+.+.....+..+..++.+....|++++++||++|+.|+++.+.|.+..+...
T Consensus 802 iaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~ 881 (1228)
T KOG0055|consen 802 IAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPR 881 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri 162 (426)
+...++..+..+...+.+ ++++...+++++|.+++..|.++...++-.+..+.+-...+.+.....+++.++..|+.++
T Consensus 882 ~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~i 961 (1228)
T KOG0055|consen 882 KSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSI 961 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 888888777776655554 3456678899999999999999999988888877777777888888999999999999999
Q ss_pred HHhhcCcccccCCC-CCCCCCCCCccEEEEeEEEEeCCCC-CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 163 FDLTKFKSKVIEKP-DAVSLDHINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 163 ~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~-~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+++++.++..+... .....+...|+|+++||+|+||.++ .++|+|+||+|++|+.+||||||||||||.+.+|.++|+
T Consensus 962 F~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd 1041 (1228)
T KOG0055|consen 962 FEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD 1041 (1228)
T ss_pred HHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 99999887543322 2222334568999999999999653 469999999999999999999999999999999999999
Q ss_pred CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccc
Q 014366 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (426)
Q Consensus 241 p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~ 320 (426)
|++|.|.+||+|+++++++++|+++|.|.|+|.||++||||||.||.. +.+.+++.+|++.+++++|+..||+||||.
T Consensus 1042 p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~--~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~ 1119 (1228)
T KOG0055|consen 1042 PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE--EVSEEEIIEAAKLANAHNFISSLPQGYDTR 1119 (1228)
T ss_pred CCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC--CCCHHHHHHHHHHhhhHHHHhcCcCcccCc
Confidence 999999999999999999999999999999999999999999999942 378999999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 321 ~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+||+|.+||||||||||||||++|||+||||||+||+||.++|+.|+++|++...++|+|+|+||++++++||.|+|+++
T Consensus 1120 vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~ 1199 (1228)
T KOG0055|consen 1120 VGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKN 1199 (1228)
T ss_pred cCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccccccccCc
Q 014366 401 GKLEELNRSTLLGSNH 416 (426)
Q Consensus 401 G~i~e~g~~~~l~~~~ 416 (426)
|+|+|+|+|++|.++.
T Consensus 1200 G~VvE~GtH~~L~~~~ 1215 (1228)
T KOG0055|consen 1200 GKVVEQGTHDELLAKR 1215 (1228)
T ss_pred CEEEecccHHHHHhCC
Confidence 9999999999888754
No 4
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.6e-80 Score=672.62 Aligned_cols=411 Identities=32% Similarity=0.467 Sum_probs=370.5
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++|+++||++++++++.+|+++++..++.++.++..++..+..++..+.+.|.++|+++||+++.|+.+.++|++...+.
T Consensus 278 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 357 (694)
T TIGR03375 278 LVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAAL 357 (694)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..........+...+ .+..++++++|++++..|.+|+|.++++.++...++.|+..+...+..++.+..+.+|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~r 437 (694)
T TIGR03375 358 ARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQS 437 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666665555444443333 3345667788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++..............+.|+++||+|+|++..+++|+|+||+|++||++||+||||||||||+|+|+|+|+|
T Consensus 438 i~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p 517 (694)
T TIGR03375 438 LDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP 517 (694)
T ss_pred HHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 99999877653221111111223467999999999986555799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+|+++++..++|++++||||++++|++||+|||.++++ +.++++++++++.++++++++.+|+|+||.+
T Consensus 518 ~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i 595 (694)
T TIGR03375 518 TEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP--YADDEEILRAAELAGVTEFVRRHPDGLDMQI 595 (694)
T ss_pred CCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC--CCCHHHHHHHHHHcChHHHHHhCccccccee
Confidence 99999999999999999999999999999999999999999999865 4678999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|.++.+++|+|+||||+++++.||+|++|++|
T Consensus 596 ~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G 675 (694)
T TIGR03375 596 GERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNG 675 (694)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred EEEEeccccccccC
Q 014366 402 KLEELNRSTLLGSN 415 (426)
Q Consensus 402 ~i~e~g~~~~l~~~ 415 (426)
+++|.|+|+++.++
T Consensus 676 ~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 676 RIVADGPKDQVLEA 689 (694)
T ss_pred EEEeeCCHHHHHHH
Confidence 99999999887654
No 5
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.6e-80 Score=661.15 Aligned_cols=409 Identities=23% Similarity=0.336 Sum_probs=348.4
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++|+++||.+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|+.|+.+.++|++..++.
T Consensus 156 ~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 235 (588)
T PRK11174 156 IAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDF 235 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHH
Confidence 35788999999999999999998888899999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLIY-FGALFILCGGSLLVSGGSFDGCSL---------VSFITSLVFMIEPIQGVGKAYNEF 152 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~lv~~g~l~~g~l---------~~~~~~~~~~~~p~~~l~~~~~~~ 152 (426)
.+...+..+.......+..... +..+++++++++.+. |.+++|.+ ++++++...++.|+..++..+..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~ 314 (588)
T PRK11174 236 RQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAK 314 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6665555444333333322221 222233334444333 66776653 233355667889999999999999
Q ss_pred HHHHHHHHHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHH
Q 014366 153 KQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLA 232 (426)
Q Consensus 153 ~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl 232 (426)
+++..+.+|+.++++.+++..............+.|+++||+|.|+++ +++|+|+||+|++||++||+||||||||||+
T Consensus 315 ~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~ 393 (588)
T PRK11174 315 AQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLL 393 (588)
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHH
Confidence 999999999999998765422111100011123469999999877654 4699999999999999999999999999999
Q ss_pred HHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHh
Q 014366 233 KLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRT 312 (426)
Q Consensus 233 ~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (426)
++|+|+| |++|+|.+||+|+++++.+++|++|+||||+|++|++||+|||+++++ +.++++++++++.+++++++++
T Consensus 394 ~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~--~~~~eei~~al~~a~l~~~i~~ 470 (588)
T PRK11174 394 NALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPL 470 (588)
T ss_pred HHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC--CCCHHHHHHHHHHhCHHHHHHh
Confidence 9999999 999999999999999999999999999999999999999999999864 4689999999999999999999
Q ss_pred cCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhc
Q 014366 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMA 392 (426)
Q Consensus 313 lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~ 392 (426)
+|+|+||.+||+|.+||||||||++||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.|
T Consensus 471 lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~a 550 (588)
T PRK11174 471 LPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQW 550 (588)
T ss_pred cccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred CEEEEEeCCEEEEeccccccccCc
Q 014366 393 KRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 393 D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|+|++|++|+++|.|+++++.++.
T Consensus 551 D~Iivl~~G~i~e~G~~~eL~~~~ 574 (588)
T PRK11174 551 DQIWVMQDGQIVQQGDYAELSQAG 574 (588)
T ss_pred CEEEEEeCCeEeecCCHHHHHhcc
Confidence 999999999999999999887653
No 6
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.5e-80 Score=670.23 Aligned_cols=407 Identities=29% Similarity=0.420 Sum_probs=366.5
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++|+++||++++++++++|+++++..++.++.++..++..+..++.++.+.|.++|+++||++|.|+.+.++|++...+.
T Consensus 268 ~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 347 (686)
T TIGR03797 268 GLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQ 347 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHH
Confidence 45789999999999999999988888899999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+......+...+...+ .+..++++++|++++..|.+|+|.++++.++...+..|+..+...+..++++..+.+|
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 427 (686)
T TIGR03797 348 RKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWER 427 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666665555444443333 3446677788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++..... .......+.|+++||+|+|++..+++|+|+||+|++||++||+||||||||||+|+|+|+|+|
T Consensus 428 i~~~l~~~~e~~~~~--~~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p 505 (686)
T TIGR03797 428 AKPILEALPEVDEAK--TDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP 505 (686)
T ss_pred HHHHhcCCcccccCc--CCCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 999998765532211 111123457999999999975556799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+|+++++.+++|++|+|||||+++|++|++|||.++.+ .++++++++++.++++++++++|+|+||.+
T Consensus 506 ~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~---~~~e~i~~al~~a~l~~~i~~lp~G~dt~i 582 (686)
T TIGR03797 506 ESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP---LTLDEAWEAARMAGLAEDIRAMPMGMHTVI 582 (686)
T ss_pred CCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999864 578999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|++|.+||||||||++||||++++|++||||||||+||+++++++.+.|+++ ++|+|+||||++.++.||+|++|++|
T Consensus 583 ge~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 583 SEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAG 660 (686)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999887 57999999999999999999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
+++|.|+++++.++.
T Consensus 661 ~iv~~G~~~~Ll~~~ 675 (686)
T TIGR03797 661 RVVQQGTYDELMARE 675 (686)
T ss_pred EEEEECCHHHHHhCC
Confidence 999999998877553
No 7
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=2.8e-80 Score=656.51 Aligned_cols=408 Identities=42% Similarity=0.645 Sum_probs=367.5
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++++.++|.+++++++..|++.++..++.++.++..++.++..+++++.+.|.++|++++|+|+.++.+.++|.+..+..
T Consensus 145 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~ 224 (567)
T COG1132 145 VLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEEL 224 (567)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999888999999999999999999999999999999999999999998887766
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+............. ...+..++++++|.+++..+.+++|.+++++.+...+..|+..+...+..++.+..+.+|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~r 304 (567)
T COG1132 225 RRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAER 304 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665554444444332222 233446667778899999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++..+.... .....+.|+++||+|+|+++ +++|+|+||++++||++||||||||||||++++|+|+|+|
T Consensus 305 i~~~l~~~~~~~~~~~~--~~~~~~~I~f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 305 LFELLDEEPEVEDPPDP--LKDTIGSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred HHHHHcCCccccCCCCC--CCCCCCeEEEEEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 99999986653332221 22334679999999999853 4799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+|+++++..++|++|++||||++||++||+|||.+|++ +.++++++++++.+++++++.++|+||||.+
T Consensus 382 ~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~--~at~eei~~a~k~a~~~d~I~~lp~g~dt~v 459 (567)
T COG1132 382 TSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP--DATDEEIEEALKLANAHEFIANLPDGYDTIV 459 (567)
T ss_pred CCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCccccccee
Confidence 99999999999999999999999999999999999999999999986 3678999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
||+|.+||||||||++||||+++||++||||||||+||+++|+.+++.+.++.+++|+|+|+||+++++.||+|+||++|
T Consensus 460 ge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G 539 (567)
T COG1132 460 GERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNG 539 (567)
T ss_pred cCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999887788999999999999999999999999
Q ss_pred EEEEeccccccccC
Q 014366 402 KLEELNRSTLLGSN 415 (426)
Q Consensus 402 ~i~e~g~~~~l~~~ 415 (426)
+++|.|+|++|.++
T Consensus 540 ~i~e~G~h~eLl~~ 553 (567)
T COG1132 540 RIVERGTHEELLAK 553 (567)
T ss_pred EEEEecCHHHHHHc
Confidence 99999999988776
No 8
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=5.8e-80 Score=669.93 Aligned_cols=410 Identities=30% Similarity=0.419 Sum_probs=367.0
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++|+++||++++++++++|+++++..++.++..+..++.++..++..+.+.|.++|+++||++|.|+.+.++|.+...+.
T Consensus 286 ~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~ 365 (710)
T TIGR03796 286 LLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKL 365 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+......+...+...+ .+..++++++|++++..|.+|+|.++++.++...++.|+..+...+..++++..+.+|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~r 445 (710)
T TIGR03796 366 LNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNR 445 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666555554444433333 3445677788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCC----C-CCCC-CCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHH
Q 014366 162 LFDLTKFKSKVIEKP----D-AVSL-DHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL 235 (426)
Q Consensus 162 i~~~l~~~~~~~~~~----~-~~~~-~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll 235 (426)
+.++++.+++..... . .... ....+.|+++||+|+|++..+++|+|+||+|++||++||+||||||||||+|+|
T Consensus 446 i~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL 525 (710)
T TIGR03796 446 LDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLV 525 (710)
T ss_pred HHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 999998766532211 0 0111 122467999999999986556799999999999999999999999999999999
Q ss_pred hcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCC
Q 014366 236 LRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQ 315 (426)
Q Consensus 236 ~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~ 315 (426)
+|+|+|++|+|.+||.|+++++.+++|++|+||||++++|++|++|||.++.+ +.++++++++++.++++++++++|+
T Consensus 526 ~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~--~~~~~~i~~al~~~~l~~~i~~lp~ 603 (710)
T TIGR03796 526 AGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP--TIPDADLVRACKDAAIHDVITSRPG 603 (710)
T ss_pred hcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCC--CCCHHHHHHHHHHhCCHHHHHhCcC
Confidence 99999999999999999999999999999999999999999999999998754 4678999999999999999999999
Q ss_pred CcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEE
Q 014366 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRV 395 (426)
Q Consensus 316 g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i 395 (426)
|+||.+|++|.+||||||||++||||++++|++||||||||+||+++++++.+.|++ .++|+|+||||++++..||||
T Consensus 604 gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~I 681 (710)
T TIGR03796 604 GYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEI 681 (710)
T ss_pred cccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999999999999987 478999999999999999999
Q ss_pred EEEeCCEEEEeccccccccCc
Q 014366 396 FLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 396 ~vl~~G~i~e~g~~~~l~~~~ 416 (426)
++|++|++++.|+++++.++.
T Consensus 682 ivl~~G~i~~~G~~~~Ll~~~ 702 (710)
T TIGR03796 682 IVLERGKVVQRGTHEELWAVG 702 (710)
T ss_pred EEEeCCEEEEecCHHHHHHcC
Confidence 999999999999998887553
No 9
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-80 Score=624.05 Aligned_cols=410 Identities=29% Similarity=0.424 Sum_probs=359.1
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
+.++++||.-++|.++++|++++++..++++.++.+++++....++++.+.|.++|+.|+|.||..+...++..+...+.
T Consensus 133 i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~f 212 (559)
T COG4988 133 IAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDF 212 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999998877666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGAL-FILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ 160 (426)
.+..++.-++..+......++ +.+.. +.+.+|..++..|.++....+.++.+..-++.|++.++..||.-+.+..+.+
T Consensus 213 R~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d 292 (559)
T COG4988 213 RKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAAD 292 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 555555544443333333333 22222 2233344444337999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccCCCCC-CCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 161 RLFDLTKFKSKVIEKPDA-VSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 161 ri~~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++..+++.|.+....... ......+..++.+|++|.|++++ ++++|+||++++|+.+||||+||||||||+++|+|++
T Consensus 293 ~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~ 371 (559)
T COG4988 293 KLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL 371 (559)
T ss_pred HHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC
Confidence 999999877654322211 11111223455669999999875 7999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc
Q 014366 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (426)
Q Consensus 240 ~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 319 (426)
+|++|+|.+||+++++++...||++++||+|+|++|++|++|||.++++ +.+++++.++++.+++.++++. |+|+||
T Consensus 372 ~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~--~~s~e~i~~al~~a~l~~~v~~-p~GLdt 448 (559)
T COG4988 372 APTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARP--DASDEEIIAALDQAGLLEFVPK-PDGLDT 448 (559)
T ss_pred CCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCC--cCCHHHHHHHHHHhcHHHhhcC-CCcccc
Confidence 9999999999999999999999999999999999999999999999976 4679999999999999999999 999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEe
Q 014366 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 320 ~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~ 399 (426)
.+||+|.+|||||+||+++||||+++++++|||||||+||.++|+.|.+.|.++.+++|+|+||||+..+..||+|++|+
T Consensus 449 ~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld 528 (559)
T COG4988 449 VIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLD 528 (559)
T ss_pred hhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccccccccCc
Q 014366 400 NGKLEELNRSTLLGSNH 416 (426)
Q Consensus 400 ~G~i~e~g~~~~l~~~~ 416 (426)
+|+++|+|+|+++.+++
T Consensus 529 ~G~l~~~g~~~~L~~~~ 545 (559)
T COG4988 529 NGRLVEQGTHEELSEKQ 545 (559)
T ss_pred CCceeccCCHHHHhhcC
Confidence 99999999999887664
No 10
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=9.2e-80 Score=667.96 Aligned_cols=410 Identities=27% Similarity=0.419 Sum_probs=366.3
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++|+++||++++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||++|.|+.+.++|.+...+.
T Consensus 288 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 367 (708)
T TIGR01193 288 LFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDY 367 (708)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..........+...+ .+..++++++|++++..|.+|+|.++++.++...++.|+..+...+..++.+..+.+|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 447 (708)
T TIGR01193 368 LNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNR 447 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555444433333332 2345667788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++..............+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+|+|
T Consensus 448 i~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p 526 (708)
T TIGR01193 448 LNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA 526 (708)
T ss_pred HHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 999998766542221111112234679999999999754 4799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|++||.|+++++.+++|++|+||||++++|++||+|||.++.. ++.++++++++++.++++++++++|+||||.+
T Consensus 527 ~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i 605 (708)
T TIGR01193 527 RSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYQTEL 605 (708)
T ss_pred CCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCC-CCCCHHHHHHHHHHhCCHHHHHhcccccCcEe
Confidence 99999999999999999999999999999999999999999999842 24678999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|++|.+||||||||++||||++++|++||||||||+||+++++.+.+.|++. +++|+|+||||+++++.||+|++|++|
T Consensus 606 ~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G 684 (708)
T TIGR01193 606 SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHG 684 (708)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999886 578999999999999999999999999
Q ss_pred EEEEeccccccccC
Q 014366 402 KLEELNRSTLLGSN 415 (426)
Q Consensus 402 ~i~e~g~~~~l~~~ 415 (426)
+++|.|+++++.++
T Consensus 685 ~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 685 KIIEQGSHDELLDR 698 (708)
T ss_pred EEEEECCHHHHHhc
Confidence 99999999887654
No 11
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=5.4e-79 Score=648.82 Aligned_cols=411 Identities=34% Similarity=0.521 Sum_probs=366.5
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
+++++++|++++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||++|.++.+.++|++..++.
T Consensus 158 ~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~ 237 (582)
T PRK11176 158 IMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRM 237 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 35688999999999999999888888899999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..+..........++ .+..++++++|++++..|.+++|.+++++++...++.|+..+...+..++.+..+.+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~r 317 (582)
T PRK11176 238 RQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666655544444333332 2335556677888899999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++..... ...++..+.|+++||+|+|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|
T Consensus 318 i~~~~~~~~~~~~~~--~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 318 LFAILDLEQEKDEGK--RVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred HHHHhcCCCcCCCCC--cCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 999988665422111 111223457999999999986556799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+|+++++.+++|++|+||||++.+|++|++|||.++.+ ...++++++++++.++++++++++|+|+||.+
T Consensus 396 ~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~i 474 (582)
T PRK11176 396 DEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYART-EQYSREQIEEAARMAYAMDFINKMDNGLDTVI 474 (582)
T ss_pred CCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCC-CCCCHHHHHHHHHHhCcHHHHHhcccccCcee
Confidence 99999999999999999999999999999999999999999999864 23678999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|
T Consensus 475 g~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDG 554 (582)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999987789999999999999999999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
+++|.|+++++.++.
T Consensus 555 ~i~e~g~~~~l~~~~ 569 (582)
T PRK11176 555 EIVERGTHAELLAQN 569 (582)
T ss_pred EEEEeCCHHHHHhCC
Confidence 999999998877653
No 12
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=6e-79 Score=660.42 Aligned_cols=409 Identities=34% Similarity=0.489 Sum_probs=361.3
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++|+++||.+++++++.+|+.+++..+++++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++.
T Consensus 294 ~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~ 373 (711)
T TIGR00958 294 GFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEET 373 (711)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+............... .+..++++++|++++..|.+++|.+++++.+...+..|+..++..+..++++..+.+|
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~r 453 (711)
T TIGR00958 374 LQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEK 453 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555444333332222222 2334566678999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+.++++.+++....... .+.+..+.|+++||+|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+|+
T Consensus 454 i~~~l~~~~~~~~~~~~-~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~ 532 (711)
T TIGR00958 454 VFEYLDRKPNIPLTGTL-APLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ 532 (711)
T ss_pred HHHHhCCCCCCCCCCCC-CCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 99999876553222111 111234679999999999854 3579999999999999999999999999999999999999
Q ss_pred CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccc
Q 014366 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (426)
Q Consensus 241 p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~ 320 (426)
|++|+|.+||+|+++++.+++|++|+||||+|++|++|++|||.++.+ +.+++++.++++.++++++++++|+|+||.
T Consensus 533 p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~--~~~~e~i~~al~~a~l~~~i~~lp~GldT~ 610 (711)
T TIGR00958 533 PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT--DTPDEEIMAAAKAANAHDFIMEFPNGYDTE 610 (711)
T ss_pred CCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCCCccCCc
Confidence 999999999999999999999999999999999999999999999864 456889999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 321 ~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+|++|.+||||||||++||||++++|+|+|||||||+||+++++.+.+ . ...+++|+|+||||+++++.||+|++|++
T Consensus 611 ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~ 688 (711)
T TIGR00958 611 VGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKK 688 (711)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999998 3 23467899999999999999999999999
Q ss_pred CEEEEeccccccccCc
Q 014366 401 GKLEELNRSTLLGSNH 416 (426)
Q Consensus 401 G~i~e~g~~~~l~~~~ 416 (426)
|+++|.|+|++|.+++
T Consensus 689 G~ive~Gt~~eL~~~~ 704 (711)
T TIGR00958 689 GSVVEMGTHKQLMEDQ 704 (711)
T ss_pred CEEEEeeCHHHHHhCC
Confidence 9999999999887664
No 13
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.7e-79 Score=662.77 Aligned_cols=411 Identities=34% Similarity=0.507 Sum_probs=369.7
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
.-|++.|+|+++++.+.|++.+....+.+.+.+...+.++..++..+..+|++.++|||.+|+.|+.+.++|.+......
T Consensus 165 i~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~ 244 (1228)
T KOG0055|consen 165 IGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENAL 244 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHH
Confidence 34778999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri 162 (426)
+...++..+..+...+.. +++......+|+|..++..+..+.|.++..+..+..-...+.+....+..+..+.+++.++
T Consensus 245 k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I 324 (1228)
T KOG0055|consen 245 KFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRI 324 (1228)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHH
Confidence 777776666655544443 3344567788999999999999998887766655555556777778888999999999999
Q ss_pred HHhhcCcccccCCC-CCCCCCCCCccEEEEeEEEEeCCCC-CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 163 FDLTKFKSKVIEKP-DAVSLDHINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 163 ~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~-~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+++++..+...... .........+.|+|+||+|+||.++ .++|+|+||+|++|+++||||||||||||++++|.|+|+
T Consensus 325 ~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd 404 (1228)
T KOG0055|consen 325 FETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD 404 (1228)
T ss_pred HHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 99998776553322 1222333568899999999999764 479999999999999999999999999999999999999
Q ss_pred CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccc
Q 014366 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (426)
Q Consensus 241 p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~ 320 (426)
|++|+|++||.|+++++.+++|++||.|+|+|.||++||+|||.||.+ +.+.+++.++++.+++++|+..+|+||||.
T Consensus 405 P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~--dat~~~i~~a~k~ana~~fi~~lp~g~~T~ 482 (1228)
T KOG0055|consen 405 PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKP--DATREEIEEAAKAANAHDFILKLPDGYDTL 482 (1228)
T ss_pred CCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCC--cccHHHHHHHHHHccHHHHHHhhHHhhccc
Confidence 999999999999999999999999999999999999999999999986 568999999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 321 ~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+||+|.+|||||||||||||||++||+|||||||||+||+++|+.|+++|++..+++|.|+|+||++++++||+|++|++
T Consensus 483 vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~ 562 (1228)
T KOG0055|consen 483 VGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEE 562 (1228)
T ss_pred ccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccccccccCc
Q 014366 401 GKLEELNRSTLLGSNH 416 (426)
Q Consensus 401 G~i~e~g~~~~l~~~~ 416 (426)
|+|+|.|+|+||..++
T Consensus 563 G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 563 GKIVEQGTHDELIALG 578 (1228)
T ss_pred CEEEEecCHHHHHhcc
Confidence 9999999999888765
No 14
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1e-77 Score=636.93 Aligned_cols=409 Identities=25% Similarity=0.343 Sum_probs=356.5
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALV-IAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHS 81 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 81 (426)
++|+++||.+++++++++|+++++ ..++.++.++..++.++..+++++.+.|.++|+++||+||.|+.+.++|++..++
T Consensus 153 ~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~ 232 (574)
T PRK11160 153 IGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQ 232 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHH
Confidence 467899999999988888877654 4566788888889999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 014366 82 DLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVF-MIEPIQGVGKAYNEFKQGEPAI 159 (426)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~-~~~p~~~l~~~~~~~~~~~~a~ 159 (426)
..+...+..+..........++ ....++++++|++++ .|.+++|.+++++.+... ...|+..+...+..++++..++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~ 311 (574)
T PRK11160 233 WLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASA 311 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666665554443333332 233445566777774 788999999998877644 4578899999999999999999
Q ss_pred HHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 160 ERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 160 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+|+.++++.+++........ .....+.|+++||+|+|+++.+++|+|+||++++||++||+||||||||||+++|+|+|
T Consensus 312 ~ri~~ll~~~~~~~~~~~~~-~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 312 RRINEITEQKPEVTFPTTST-AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred HHHHHHHhCCCCCCCCcccC-CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 99999998766532211111 11234579999999999865457999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc
Q 014366 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (426)
Q Consensus 240 ~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 319 (426)
+|++|+|.+||+++++++..++|++|+||||++++|++|++||+.++.+ +.++++++++++.+++++++++ |+||||
T Consensus 391 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~--~~~~~~i~~al~~~~l~~~i~~-p~GldT 467 (574)
T PRK11160 391 DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP--NASDEALIEVLQQVGLEKLLED-DKGLNA 467 (574)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCC--ccCHHHHHHHHHHcCCHHHHcC-ccccCc
Confidence 9999999999999999999999999999999999999999999999864 4578999999999999999999 999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEe
Q 014366 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 320 ~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~ 399 (426)
.+|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|.++.+++|+|+||||++++..||+|++|+
T Consensus 468 ~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~ 547 (574)
T PRK11160 468 WLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMD 547 (574)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999887899999999999999999999999
Q ss_pred CCEEEEeccccccccCc
Q 014366 400 NGKLEELNRSTLLGSNH 416 (426)
Q Consensus 400 ~G~i~e~g~~~~l~~~~ 416 (426)
+|+++|.|+++++.++.
T Consensus 548 ~G~i~~~g~~~~l~~~~ 564 (574)
T PRK11160 548 NGQIIEQGTHQELLAQQ 564 (574)
T ss_pred CCeEEEeCCHHHHHhcC
Confidence 99999999998887654
No 15
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.6e-77 Score=648.82 Aligned_cols=411 Identities=36% Similarity=0.530 Sum_probs=369.7
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++|+++||++++++++++|+++++..++.++.++..++..+..++.++.+.|.++|+++||++|.|+.+.++|.+...+.
T Consensus 271 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 350 (694)
T TIGR01846 271 AVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAY 350 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..+...........+ .+..++++++|++++..|.+|+|.++++.++...+..|+..+...+..++++..+.+|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 430 (694)
T TIGR01846 351 VAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALER 430 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666665555444443333 3345667788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++.... .....+...+.|+++||+|+|++..+++|+|+||+|++||++||+|+||||||||+|+|+|+|+|
T Consensus 431 i~~~l~~~~e~~~~-~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p 509 (694)
T TIGR01846 431 LGDILNSPTEPRSA-GLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP 509 (694)
T ss_pred HHHHHcCCCCccCC-CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 99999876653221 11112223467999999999976545799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|++||+++++++.+++|++++||||++.+|++|++||+.++.+ +.++++++++++.++++++++++|+|+||.+
T Consensus 510 ~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i 587 (694)
T TIGR01846 510 QHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEV 587 (694)
T ss_pred CCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC--CCCHHHHHHHHHHcChHHHHHhCcCccCcEe
Confidence 99999999999999999999999999999999999999999999764 4578999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
+++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|+++.+++|+|+||||++.++.||+|++|++|
T Consensus 588 ~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G 667 (694)
T TIGR01846 588 GEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKG 667 (694)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999987789999999999999999999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
++++.|+++++.++.
T Consensus 668 ~i~~~g~~~~l~~~~ 682 (694)
T TIGR01846 668 QIAESGRHEELLALQ 682 (694)
T ss_pred EEEEeCCHHHHHHcC
Confidence 999999998877654
No 16
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=4.4e-77 Score=632.88 Aligned_cols=411 Identities=37% Similarity=0.568 Sum_probs=367.9
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++++++||++++++++++|+.+++..++.++.++..++..+..++..+.+.|.++|+++||.+|.++.+.++|++..++.
T Consensus 147 ~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~ 226 (571)
T TIGR02203 147 IVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRN 226 (571)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..+.......+...+ .+..++++++|++++..|.+|+|.++++.++..++..|+..+...+..+++++.+.+|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~r 306 (571)
T TIGR02203 227 RRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAES 306 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555544444333332 3345667778899999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++...... ......+.|+++||+|+|++..+++|+|+||+|++||+++|+|+||||||||+++|+|+++|
T Consensus 307 i~~~l~~~~~~~~~~~--~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~ 384 (571)
T TIGR02203 307 LFTLLDSPPEKDTGTR--AIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP 384 (571)
T ss_pred HHHHHcCCCCCCCCCC--CCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 9999976654322111 11123457999999999976545799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+++++++.+++|++++|+||+|++|++|++|||.++.+ .+.++++++++++.+++++++.++|+|+||.+
T Consensus 385 ~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i 463 (571)
T TIGR02203 385 DSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRT-EQADRAEIERALAAAYAQDFVDKLPLGLDTPI 463 (571)
T ss_pred CCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCC-CCCCHHHHHHHHHHcChHHHHHhCcCccccee
Confidence 99999999999999999999999999999999999999999999863 14678999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|.+..+++|+|+||||++.+..||+|++|++|
T Consensus 464 ~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g 543 (571)
T TIGR02203 464 GENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDG 543 (571)
T ss_pred cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999987789999999999999999999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
++++.|+++++.+++
T Consensus 544 ~i~~~g~~~~l~~~~ 558 (571)
T TIGR02203 544 RIVERGTHNELLARN 558 (571)
T ss_pred EEEeeCCHHHHHHcC
Confidence 999999998876543
No 17
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=9.6e-77 Score=632.59 Aligned_cols=406 Identities=27% Similarity=0.398 Sum_probs=351.6
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
+++++++|++++++++++|+.+++..+..++.++..++..+..++.++.+.|.++|+++||+||.++.+.++|.+..++.
T Consensus 158 ~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~ 237 (592)
T PRK10790 158 VAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSH 237 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHH
Confidence 35678999999999988898888777788888888888888999999999999999999999999999999999877766
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALI-PQTVQLIY-FGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (426)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ 160 (426)
.+...+..+..... .....++. +..+++++++++ +..|.+++|.+++++.+...+..|+..+...+..++++..+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ 316 (592)
T PRK10790 238 YMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGE 316 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555544433322 11111111 111222223333 5789999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 161 RLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 161 ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
|+.++++.+++.... . ..+...+.|+++||+|+|+++ +++|+|+||+|++||++||+|+||||||||+++|+|+|+
T Consensus 317 ri~~~l~~~~~~~~~-~--~~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~ 392 (592)
T PRK10790 317 RVFELMDGPRQQYGN-D--DRPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP 392 (592)
T ss_pred HHHHHhcCCCccCCC-C--ccCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 999998765432111 1 111223579999999999854 469999999999999999999999999999999999999
Q ss_pred CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccc
Q 014366 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (426)
Q Consensus 241 p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~ 320 (426)
|++|+|.+||.|+++++.+++|++|+||||+|.+|++|++|||.+++ +.++++++++++.++++++++++|+|+||.
T Consensus 393 p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~---~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~ 469 (592)
T PRK10790 393 LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR---DISEEQVWQALETVQLAELARSLPDGLYTP 469 (592)
T ss_pred CCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC---CCCHHHHHHHHHHcCcHHHHHhcccccccc
Confidence 99999999999999999999999999999999999999999999985 357899999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 321 ~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+|++|.+||||||||++|||||+++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||++.++.||+|++|++
T Consensus 470 i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~ 549 (592)
T PRK10790 470 LGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHR 549 (592)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999998778999999999999999999999999
Q ss_pred CEEEEeccccccccCc
Q 014366 401 GKLEELNRSTLLGSNH 416 (426)
Q Consensus 401 G~i~e~g~~~~l~~~~ 416 (426)
|++++.|+++++.++.
T Consensus 550 G~i~~~G~~~~L~~~~ 565 (592)
T PRK10790 550 GQAVEQGTHQQLLAAQ 565 (592)
T ss_pred CEEEEEcCHHHHHhCC
Confidence 9999999998877553
No 18
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.5e-76 Score=628.78 Aligned_cols=409 Identities=32% Similarity=0.482 Sum_probs=361.6
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
++++++|++++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||.||.++.+.++|.+..++..
T Consensus 150 ~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~ 229 (588)
T PRK13657 150 LALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLL 229 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHH
Confidence 45789999999999999998888888899999999999999999999999999999999999999999999998887766
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri 162 (426)
+...+......+......++ .+..++++++|++++.+|.+++|.++++..++..+..|+..+...+..+..+..+.+|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i 309 (588)
T PRK13657 230 AAQMPVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEF 309 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555544444333333322 23456667789999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 163 FDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
.++++.+++..............+.|+++||+|+|+++ +++|+|+||++++||+++|+|+||||||||+|+|+|+|+|+
T Consensus 310 ~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~ 388 (588)
T PRK13657 310 FEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ 388 (588)
T ss_pred HHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 99987654322111111111223479999999999854 46999999999999999999999999999999999999999
Q ss_pred ccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccC
Q 014366 243 SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322 (426)
Q Consensus 243 ~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~ 322 (426)
+|+|.+||+++.+++..++|++|+||||+|.+|++|++|||.++.+ +.++++++.+++.++++++++++|+|+||.+|
T Consensus 389 ~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~--~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~ 466 (588)
T PRK13657 389 SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP--DATDEEMRAAAERAQAHDFIERKPDGYDTVVG 466 (588)
T ss_pred CCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCC--CCCHHHHHHHHHHhCHHHHHHhCcccccchhc
Confidence 9999999999999999999999999999999999999999999864 45788999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCE
Q 014366 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGK 402 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~ 402 (426)
++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|+
T Consensus 467 ~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~ 546 (588)
T PRK13657 467 ERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGR 546 (588)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999998877899999999999999999999999999
Q ss_pred EEEeccccccccC
Q 014366 403 LEELNRSTLLGSN 415 (426)
Q Consensus 403 i~e~g~~~~l~~~ 415 (426)
+++.|+++++..+
T Consensus 547 i~~~g~~~~l~~~ 559 (588)
T PRK13657 547 VVESGSFDELVAR 559 (588)
T ss_pred EEEeCCHHHHHHC
Confidence 9999999877644
No 19
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.2e-75 Score=617.94 Aligned_cols=407 Identities=25% Similarity=0.389 Sum_probs=358.6
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++|+++||++++++++.+|+++++..+..++.++..++.++..++..+.+.|.++|+++||+||.|+.+.++|++..++.
T Consensus 134 ~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 213 (544)
T TIGR01842 134 LVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKY 213 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHH
Confidence 35789999999999888888887777778888888889999999999999999999999999999999999999888776
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..............+ .+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+..++.+..+.+|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~r 293 (544)
T TIGR01842 214 LSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKR 293 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655544444333333222 2335566778999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++.... ...+...+.|+++||+|+|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|
T Consensus 294 i~~~l~~~~~~~~~---~~~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 370 (544)
T TIGR01842 294 LNELLANYPSRDPA---MPLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP 370 (544)
T ss_pred HHHHHhCCccccCC---CCCCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 99999765543211 111122357999999999976545799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+++.+++..++|++++||||+|++|++|++||+.++.+ +.++++++++++.++++++++++|+|+||.+
T Consensus 371 ~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~ 448 (544)
T TIGR01842 371 TSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYDTVI 448 (544)
T ss_pred CCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCcccccccc
Confidence 99999999999999999999999999999999999999999987653 3578899999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEeC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|+++. +++|+|+||||++.+..||+|++|++
T Consensus 449 ~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~ 528 (544)
T TIGR01842 449 GPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQD 528 (544)
T ss_pred CCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999885 57899999999999889999999999
Q ss_pred CEEEEecccccccc
Q 014366 401 GKLEELNRSTLLGS 414 (426)
Q Consensus 401 G~i~e~g~~~~l~~ 414 (426)
|++++.|+++++.+
T Consensus 529 G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 529 GRIARFGERDEVLA 542 (544)
T ss_pred CEEEeeCCHHHHhh
Confidence 99999999877643
No 20
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=4.1e-76 Score=620.01 Aligned_cols=380 Identities=29% Similarity=0.368 Sum_probs=331.3
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERL-RKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHS 81 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 81 (426)
++|+++||.+++++++.+|++.++..++.++. ++..++.++..+++.+.+.|.++|+++||+||.|+.+.++|++..++
T Consensus 146 ~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~ 225 (529)
T TIGR02868 146 AAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRE 225 (529)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHH
Confidence 35688999999999888888877766655554 56677778888999999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 82 DLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (426)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ 160 (426)
..+...+..+..........++ .+..++++++|++++..|.+++|.++++..+...+..|+..+...+..++++..+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 305 (529)
T TIGR02868 226 LLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAE 305 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666655554443333322 233455667889999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccCCCC--CCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 161 RLFDLTKFKSKVIEKPD--AVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 161 ri~~~l~~~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
|+.++++.+++..+... .....+..+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+
T Consensus 306 ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 306 RIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred HHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 99999987654322111 11111223579999999999864 3699999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcc
Q 014366 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318 (426)
Q Consensus 239 ~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~ 318 (426)
|+|++|+|.+||+|++++ .+++|++|+||||+|++|++||+|||.++.+ +.++++++++++.+++++++.++|+|+|
T Consensus 385 ~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~--~~~~e~i~~al~~a~l~~~i~~lp~Gld 461 (529)
T TIGR02868 385 LDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRP--DATDEELWAALERVGLADWLRSLPDGLD 461 (529)
T ss_pred CCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCC--CCCHHHHHHHHHHcCCHHHHHhCccccc
Confidence 999999999999999999 9999999999999999999999999999864 4678999999999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccCh
Q 014366 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHL 386 (426)
Q Consensus 319 t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~ 386 (426)
|.+|++|.+||||||||++||||++++|++||||||||+||+++++.|.+.+.+..+++|+|+||||+
T Consensus 462 T~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 462 TVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred chhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999988889999999995
No 21
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.6e-75 Score=619.89 Aligned_cols=407 Identities=31% Similarity=0.448 Sum_probs=361.9
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHH
Q 014366 6 LVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCE 85 (426)
Q Consensus 6 ~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 85 (426)
++++|.+++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+||.++.+.++|.+...+..+.
T Consensus 133 ~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~ 212 (569)
T PRK10789 133 TQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKK 212 (569)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999888899999999999999999999999999999999999999999999999988776666
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 86 LLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFD 164 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~ 164 (426)
..+..+............ .+..++++++|++++.+|.+|+|.++++..+...+..|+..++..+..++.+..+.+|+.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ 292 (569)
T PRK10789 213 NMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRA 292 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555544433333322 2335566778999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc
Q 014366 165 LTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244 (426)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G 244 (426)
+++.+++..... ...+...+.|+++|++|+|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|
T Consensus 293 ll~~~~~~~~~~--~~~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G 370 (569)
T PRK10789 293 MLAEAPVVKDGS--EPVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEG 370 (569)
T ss_pred HHcCCCcccCCC--CCCCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 998665422111 111122457999999999986545799999999999999999999999999999999999999999
Q ss_pred EEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCC
Q 014366 245 CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPR 324 (426)
Q Consensus 245 ~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~ 324 (426)
+|.+||+++.+++..++|++++|+||+|.+|++|++||+.++.+ +.++++++++++.+++++++.++|+|++|.+|++
T Consensus 371 ~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 448 (569)
T PRK10789 371 DIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP--DATQQEIEHVARLASVHDDILRLPQGYDTEVGER 448 (569)
T ss_pred EEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCC
Confidence 99999999999999999999999999999999999999999864 3578899999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEE
Q 014366 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLE 404 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~ 404 (426)
|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|+++.+++|+|+||||++.++.||+|++|++|+++
T Consensus 449 g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~ 528 (569)
T PRK10789 449 GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIA 528 (569)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999999987789999999999999999999999999999
Q ss_pred EeccccccccCc
Q 014366 405 ELNRSTLLGSNH 416 (426)
Q Consensus 405 e~g~~~~l~~~~ 416 (426)
+.|+++++.+++
T Consensus 529 ~~g~~~~l~~~~ 540 (569)
T PRK10789 529 QRGNHDQLAQQS 540 (569)
T ss_pred EecCHHHHHHcC
Confidence 999998776543
No 22
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.8e-76 Score=673.21 Aligned_cols=408 Identities=25% Similarity=0.378 Sum_probs=342.3
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHhccHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKIS-KQ-----------------SHLSIASLSAYLNEVLPAILFVKA 64 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~ik~ 64 (426)
+++++++|.+++++++++ +++.+.+.++.+... ++ ..+..++.+..+.|.++|+++||+
T Consensus 961 ~~~~~~~~~l~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka 1037 (1466)
T PTZ00265 961 VMSFYFCPIVAAVLTGTY---FIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVII 1037 (1466)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHH
Confidence 356889998887765433 333444444333211 11 123466788999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Q 014366 65 NNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQ 143 (426)
Q Consensus 65 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~ 143 (426)
|+.|+.+.++|.+..+...+...+.....++...+...+ .+..++++++|++++..|.+++|.+++++.+......++.
T Consensus 1038 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~ 1117 (1466)
T PTZ00265 1038 YGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAG 1117 (1466)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988776666555555554444444333 3446777889999999999999999998877666566788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccccCCC-CCCC---CCCCCccEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEE
Q 014366 144 GVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKP-DAVS---LDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETV 218 (426)
Q Consensus 144 ~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~-~~~~---~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~ 218 (426)
.+.+.+..++.+..+++|++++++.+++..... .... .....+.|+|+||+|+|+++ ..++|+|+||+|++|+++
T Consensus 1118 ~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~v 1197 (1466)
T PTZ00265 1118 KLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTT 1197 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEE
Confidence 899999999999999999999998765321111 1111 11234679999999999853 247999999999999999
Q ss_pred EEECCCCCcHHHHHHHHhcCCCC------------------------------------------------------Ccc
Q 014366 219 ALIGPSGGGKSTLAKLLLRLYDP------------------------------------------------------LSG 244 (426)
Q Consensus 219 ~ivG~sGsGKSTLl~ll~g~~~p------------------------------------------------------~~G 244 (426)
|||||||||||||+++|+|+|+| ++|
T Consensus 1198 AIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 1277 (1466)
T PTZ00265 1198 AIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSG 1277 (1466)
T ss_pred EEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCC
Confidence 99999999999999999999998 699
Q ss_pred EEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCC
Q 014366 245 CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPR 324 (426)
Q Consensus 245 ~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~ 324 (426)
+|++||+|+++++.+++|++|+||||+|.||++||+|||.|+.+ +.++++++++++.+++++|+..||+||||.+|++
T Consensus 1278 ~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~--~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~ 1355 (1466)
T PTZ00265 1278 KILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE--DATREDVKRACKFAAIDEFIESLPNKYDTNVGPY 1355 (1466)
T ss_pred eEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCC
Confidence 99999999999999999999999999999999999999999965 4678999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHHhcCEEEEEeC--
Q 014366 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDN-- 400 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~-- 400 (426)
|.+|||||||||||||||+++|+|||||||||+||+++++.|++.|.++. +++|+|+||||+++++.||+|+||++
T Consensus 1356 G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~ 1435 (1466)
T PTZ00265 1356 GKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPD 1435 (1466)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999984 58999999999999999999999999
Q ss_pred --CEEE-EeccccccccC
Q 014366 401 --GKLE-ELNRSTLLGSN 415 (426)
Q Consensus 401 --G~i~-e~g~~~~l~~~ 415 (426)
|+++ |+|+|++|.++
T Consensus 1436 ~~G~iv~e~Gth~eLl~~ 1453 (1466)
T PTZ00265 1436 RTGSFVQAHGTHEELLSV 1453 (1466)
T ss_pred CCCCEEEEecCHHHHHhc
Confidence 9954 89999988763
No 23
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-78 Score=592.87 Aligned_cols=410 Identities=31% Similarity=0.463 Sum_probs=362.6
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
+....||++++++++++.++..+...+...-.+.++++..+..+-.....|++-+.+|||-||+|+.+.++|++...++.
T Consensus 353 F~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yq 432 (790)
T KOG0056|consen 353 FFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQ 432 (790)
T ss_pred hhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHH
Confidence 34568999999999998888877776666666777777777777778889999999999999999999999999887776
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri 162 (426)
+...+...-..+....-. ++.++.++.-.+.+|+|..+.+++|.++.|.+|+.++..|++.++..+..+|.....++++
T Consensus 433 k~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnm 512 (790)
T KOG0056|consen 433 KQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENM 512 (790)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHH
Confidence 655554332222222211 1222333333345677778999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 163 FDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
+++++.++|..+.++..+.....|.|+|+||+|.|.++ +++|+||||++.||+.+|+|||||+||||++++|.++++.+
T Consensus 513 fdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~ 591 (790)
T KOG0056|consen 513 FDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN 591 (790)
T ss_pred HHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc
Confidence 99999888877666665555567899999999999876 57999999999999999999999999999999999999999
Q ss_pred ccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccC
Q 014366 243 SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322 (426)
Q Consensus 243 ~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~ 322 (426)
+|+|.+||+|++.....++|++||+||||..||+.||..||.|+.+ ++++|++.++++.++++|-+..+|+||+|.+|
T Consensus 592 sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~--~AsneevyaAAkAA~IHdrIl~fPegY~t~VG 669 (790)
T KOG0056|consen 592 SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKP--SASNEEVYAAAKAAQIHDRILQFPEGYNTRVG 669 (790)
T ss_pred CceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCC--CCChHHHHHHHHHhhHHHHHhcCchhhhhhhh
Confidence 9999999999999999999999999999999999999999999986 46789999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCE
Q 014366 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGK 402 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~ 402 (426)
|+|-.|||||||||||||+++++|.+++|||+||+||..+|+.|+.+|.++..++|.|+|+||++++-+||.|+|+++|+
T Consensus 670 ERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~ 749 (790)
T KOG0056|consen 670 ERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGR 749 (790)
T ss_pred hcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccCc
Q 014366 403 LEELNRSTLLGSNH 416 (426)
Q Consensus 403 i~e~g~~~~l~~~~ 416 (426)
|+|.|+|++|...+
T Consensus 750 IvErG~HeeLl~rd 763 (790)
T KOG0056|consen 750 IVERGRHEELLKRD 763 (790)
T ss_pred EeecCcHHHHHhcc
Confidence 99999999877663
No 24
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=3.9e-75 Score=618.28 Aligned_cols=411 Identities=30% Similarity=0.442 Sum_probs=361.9
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++|+++||.+++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+||.++.+.++|++..++.
T Consensus 149 ~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~ 228 (585)
T TIGR01192 149 PTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNL 228 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..+...+.......+ .+..++++++|++++.+|.+++|.++++..++..+..|+..+...+..++.+..+.+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~r 308 (585)
T TIGR01192 229 LSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLED 308 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555444444333332222 2345666778999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++..+.......+...+.|+++||+|+|+++ +++++|+||+|++||+++|+||||||||||+++|+|+++|
T Consensus 309 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 387 (585)
T TIGR01192 309 FFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP 387 (585)
T ss_pred HHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC
Confidence 999987654422111111111223569999999999854 3689999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||.++.+++.+++|++++||||++.+|++|++||+.++.+ +.++++++++++.+++++++.++|+|++|.+
T Consensus 388 ~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~ 465 (585)
T TIGR01192 388 TVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLV 465 (585)
T ss_pred CCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccchh
Confidence 99999999999999999999999999999999999999999999764 3568889999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|++|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.|+++.+++|+|+||||++.+..||+|++|++|
T Consensus 466 ~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G 545 (585)
T TIGR01192 466 GERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQG 545 (585)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999887789999999999999999999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
++++.|+++++.++.
T Consensus 546 ~i~~~g~~~~l~~~~ 560 (585)
T TIGR01192 546 RLIEKGSFQELIQKD 560 (585)
T ss_pred EEEEECCHHHHHHCC
Confidence 999999998876543
No 25
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=6.6e-75 Score=616.77 Aligned_cols=411 Identities=38% Similarity=0.576 Sum_probs=361.1
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
++++++|++++++++.+|+++++..++.++.++..++..+..++..+.+.|.++|+++||.++.++.+.++|.+..++..
T Consensus 152 ~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ 231 (576)
T TIGR02204 152 MMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAY 231 (576)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHH
Confidence 46789999999999989988888888999999999999999999999999999999999999999999999998887666
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri 162 (426)
+...+..........+...+ .+..++++++|++++..|.+|+|.++++..+..++..|+..+...+..++.+..+.+|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri 311 (576)
T TIGR02204 232 EAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERL 311 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555544433333332222 23345566789999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccCCCCCCC-CCCCCccEEEEeEEEEeCCCC-CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 163 FDLTKFKSKVIEKPDAVS-LDHINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~-~~~~~~~i~~~~v~~~y~~~~-~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
.++++.+++......... ..+..+.|+++||+|+|++.. +++|+|+||+++|||+++|+||||||||||+|+|+|+++
T Consensus 312 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~ 391 (576)
T TIGR02204 312 IELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD 391 (576)
T ss_pred HHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 999876554221111111 111235699999999998532 569999999999999999999999999999999999999
Q ss_pred CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccc
Q 014366 241 PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH 320 (426)
Q Consensus 241 p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~ 320 (426)
|++|+|.+||.++++++..++|++++|+||+|++|++|++|||.++.+ +.++++++++++.+++.++++++|+|+||.
T Consensus 392 p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~--~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~ 469 (576)
T TIGR02204 392 PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP--DATDEEVEAAARAAHAHEFISALPEGYDTY 469 (576)
T ss_pred CCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCC--CCCHHHHHHHHHHcCcHHHHHhCCCCCCce
Confidence 999999999999999999999999999999999999999999999864 346889999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 321 ~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|+++.+++|+|+||||++.+..||+|++|++
T Consensus 470 i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~ 549 (576)
T TIGR02204 470 LGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQ 549 (576)
T ss_pred eCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999998778999999999999999999999999
Q ss_pred CEEEEeccccccccCc
Q 014366 401 GKLEELNRSTLLGSNH 416 (426)
Q Consensus 401 G~i~e~g~~~~l~~~~ 416 (426)
|++++.|+++++.++.
T Consensus 550 g~~~~~g~~~~l~~~~ 565 (576)
T TIGR02204 550 GRIVAQGTHAELIAKG 565 (576)
T ss_pred CEEEeeecHHHHHHcC
Confidence 9999999988776553
No 26
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-75 Score=584.27 Aligned_cols=400 Identities=30% Similarity=0.467 Sum_probs=341.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH
Q 014366 10 PVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKK 89 (426)
Q Consensus 10 ~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 89 (426)
+..+++++..+..+..+......+-.+..+++..+.......+.|.+.+.++||.||.|+++.++|.....++.+...+.
T Consensus 175 a~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~ 254 (591)
T KOG0057|consen 175 AAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKY 254 (591)
T ss_pred hHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhH
Confidence 44455555554455544444555556677888889999999999999999999999999999999999888777776666
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014366 90 RKMKALIPQTVQLIY-FGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKF 168 (426)
Q Consensus 90 ~~~~~~~~~~~~~~~-~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~l~~ 168 (426)
....++....-..++ .....+++.|..-+.++.+|.|.++.+..+..++..|+..++..+..+.++...+...+...+.
T Consensus 255 ~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~ 334 (591)
T KOG0057|consen 255 SSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEV 334 (591)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Confidence 554444433332322 2233444455555778899999999999999999999999999999999998888877655433
Q ss_pred cccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE
Q 014366 169 KSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248 (426)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~ 248 (426)
.....+ .+.+....++.|+|+||+|+|+++ +++|+++||+|++||++||+|+|||||||++|+|.+|++ ++|+|++
T Consensus 335 ~~~i~~--~~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~I 410 (591)
T KOG0057|consen 335 DEDIQE--AALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILI 410 (591)
T ss_pred hhhhhh--ccCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEE
Confidence 222211 112233345679999999999875 469999999999999999999999999999999999999 9999999
Q ss_pred cCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCC
Q 014366 249 DDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSL 328 (426)
Q Consensus 249 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~L 328 (426)
||+++++++++.+|+.|||||||..||++||.+||.||++ ..+++++.++|++++++|.+.++|+||+|.+||+|..|
T Consensus 411 dG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~--sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~L 488 (591)
T KOG0057|consen 411 DGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNP--SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLML 488 (591)
T ss_pred CCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCC--CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhccccc
Confidence 9999999999999999999999999999999999999986 46799999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEecc
Q 014366 329 SGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 329 SgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~ 408 (426)
||||||||+||||+++||||+++|||||+||.+||+.+.+.+.+...++|+|+|.||+++++.||+|+++++|++.|.|+
T Consensus 489 SGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gt 568 (591)
T KOG0057|consen 489 SGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGT 568 (591)
T ss_pred ccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEecc
Confidence 99999999999999999999999999999999999999999999778899999999999999999999999999999999
Q ss_pred ccccccC
Q 014366 409 STLLGSN 415 (426)
Q Consensus 409 ~~~l~~~ 415 (426)
+++|...
T Consensus 569 h~ell~~ 575 (591)
T KOG0057|consen 569 HSELLAP 575 (591)
T ss_pred HHHHhhh
Confidence 9887763
No 27
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.2e-74 Score=608.88 Aligned_cols=392 Identities=28% Similarity=0.409 Sum_probs=342.4
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++++++||.+++++++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++.
T Consensus 137 ~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 216 (529)
T TIGR02857 137 AAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEY 216 (529)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHH
Confidence 35678999999999999998888888888999888999999999999999999999999999999999999999887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLIY-FGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..+..........++. +..+++++++++.+..|.+|+|.++++.++...+..|+..+...+..++++..+.+|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~r 296 (529)
T TIGR02857 217 RERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEA 296 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555444443333333222 223333445666677899999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++..+.. ..+ ....+.|+++||+|+|+++.+++|+|+||+|++||+++|+||||||||||+|+|+|+++|
T Consensus 297 i~~ll~~~~~~~~~~-~~~-~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 374 (529)
T TIGR02857 297 LFAVLDAPRPLAGKA-PVT-AAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP 374 (529)
T ss_pred HHHHhCCCcccCCCc-CCC-CCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 999997543321111 111 112347999999999987545799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+|+++++.+++|++++||||+|++|++|++||+.++.+ +.++++++++++.++++++++++|+|+||.+
T Consensus 375 ~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v 452 (529)
T TIGR02857 375 TEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARP--DASDAEIRRALERAGLDEFVAALPQGLDTLI 452 (529)
T ss_pred CCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchh
Confidence 99999999999999999999999999999999999999999999764 3568899999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEE
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLL 398 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl 398 (426)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.++++.+++|+|+||||++.++.||+|++|
T Consensus 453 ~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 453 GEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred ccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999999999999999999999999999987789999999999999999999986
No 28
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-74 Score=577.11 Aligned_cols=408 Identities=25% Similarity=0.350 Sum_probs=349.0
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 5 MLVISPVLSLISALVIPSMALVIAY-LGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 5 ~~~~s~~l~li~l~~~pl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
+.++||++++.+...+.+..++.++ +.+..++..++..+.++.+.+.+.|.+.|..+++.||+++.+.+.+.+....+.
T Consensus 153 L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~ 232 (573)
T COG4987 153 LSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWL 232 (573)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 4578999998877766666655555 455567778888899999999999999999999999999999999988877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQLIYFGALF-ILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVG-KAYNEFKQGEPAIER 161 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~-~~~~~~~~~~~a~~r 161 (426)
+...+..++..+...+..++....++ .+++.+..+..|..+......++......+.++..+. ..+..+.+...|+.|
T Consensus 233 ~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~R 312 (573)
T COG4987 233 KAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARR 312 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHH
Confidence 66666666665555544444332222 3333444455677776555555555566777777777 788899999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++.+.+++...+ +.. ....+..++++||||+|+++++++|+|+||++++||++||+|+||||||||+++|.|.|+|
T Consensus 313 l~~i~~q~~e~~~~-~~~-~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~ 390 (573)
T COG4987 313 LNDILDQKPEVTFP-DEQ-TATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP 390 (573)
T ss_pred HhhhccCCcccCCC-ccc-cCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC
Confidence 99999888775443 111 1112227999999999998877899999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.++|.++..++.+.+|+.+++++|.+++|++|+|||+.++++ +.++++++++++.++++++++..|+||+|++
T Consensus 391 ~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~--~AsDEel~~aL~qvgL~~l~~~~p~gl~t~l 468 (573)
T COG4987 391 QQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANP--DASDEELWAALQQVGLEKLLESAPDGLNTWL 468 (573)
T ss_pred CCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHcCHHHHHHhChhhhhchh
Confidence 99999999999999999999999999999999999999999999886 4789999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
||.|..||||||||++|||+|++|+|++||||||.|||+.||+++++.+.+..++||+|+||||+..++.||||+||++|
T Consensus 469 ge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~G 548 (573)
T COG4987 469 GEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNG 548 (573)
T ss_pred ccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
+++|+|+|.++..++
T Consensus 549 kiie~G~~~~Ll~~~ 563 (573)
T COG4987 549 KIIEEGTHAELLANN 563 (573)
T ss_pred eeeecCCHHhhhccc
Confidence 999999998776654
No 29
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.4e-73 Score=657.74 Aligned_cols=408 Identities=24% Similarity=0.341 Sum_probs=345.0
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
++++.+|++++++++++++++++.+++.+..++..+...+..+.+.+.+.|+++|+++||+||.++++.+++.+..+...
T Consensus 1099 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~ 1178 (1522)
T TIGR00957 1099 VILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQ 1178 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 35667787777666666666666666777777777778888999999999999999999999999998888877766554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVS-GGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~-~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri 162 (426)
+..+.......+......++ +.+++++++.+.+. .|.++.|.+.+++.+...+..|+..+...+..++.+..+++|+
T Consensus 1179 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi 1256 (1522)
T TIGR00957 1179 KAYYPSIVANRWLAVRLECV--GNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERL 1256 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333222222222222221 12233334444443 5789999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccCC-CCC--CCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 163 FDLTKFKSKVIEK-PDA--VSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 163 ~~~l~~~~~~~~~-~~~--~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++.+++.... ... ....+..+.|+|+||+|+|+++.+++|+|+||+|++||++||||+||||||||+++|.|+|
T Consensus 1257 ~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~ 1336 (1522)
T TIGR00957 1257 KEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN 1336 (1522)
T ss_pred HHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 9999877654211 111 1111345789999999999865457999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc
Q 014366 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (426)
Q Consensus 240 ~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 319 (426)
+|++|+|.+||+|+++++.+++|++|++|||||.+|++||||||.... +.++++++++++.+++++++.++|+||||
T Consensus 1337 ~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~---~~sdeei~~al~~a~l~~~I~~lp~GLdt 1413 (1522)
T TIGR00957 1337 ESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS---QYSDEEVWWALELAHLKTFVSALPDKLDH 1413 (1522)
T ss_pred cCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc---CCCHHHHHHHHHHcCcHHHHhhCccCCCc
Confidence 999999999999999999999999999999999999999999997432 46789999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEe
Q 014366 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 320 ~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~ 399 (426)
.+|++|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||||+||+
T Consensus 1414 ~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld 1493 (1522)
T TIGR00957 1414 ECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLD 1493 (1522)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred CCEEEEeccccccccCc
Q 014366 400 NGKLEELNRSTLLGSNH 416 (426)
Q Consensus 400 ~G~i~e~g~~~~l~~~~ 416 (426)
+|+|+|.|+|++|.++.
T Consensus 1494 ~G~IvE~G~~~eLl~~~ 1510 (1522)
T TIGR00957 1494 KGEVAEFGAPSNLLQQR 1510 (1522)
T ss_pred CCEEEEECCHHHHHhCC
Confidence 99999999999887663
No 30
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-74 Score=554.76 Aligned_cols=410 Identities=32% Similarity=0.461 Sum_probs=363.2
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
+...++|+.++++++++.++.++.......-....++..++.++.++...|++-+.+++|.||.|+.+..+|....+.+.
T Consensus 77 ~~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~ 156 (497)
T COG5265 77 LWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYE 156 (497)
T ss_pred HHhhcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHH
Confidence 44568999999999998888887766666666677777888899999999999999999999999999999998887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQLIY-FGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri 162 (426)
+...+...-..+....-..++ .+.......+...+..|.+|+|.++....++.+...|+..++..+.++.++...+++.
T Consensus 157 ~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~m 236 (497)
T COG5265 157 KAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKM 236 (497)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHH
Confidence 666555433333332222222 2334445567778889999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccCCCCCCCCC-CCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 163 FDLTKFKSKVIEKPDAVSLD-HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+++++.+.+..+.+...+.. ...+.+.|++|+|.|.+. +++|+++||++++|+++|+|||||+||||++++|.+||++
T Consensus 237 fdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~ 315 (497)
T COG5265 237 FDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV 315 (497)
T ss_pred HHhhccchhhccCCCCccccccccceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC
Confidence 99998887766555444443 335679999999999875 5799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|.|.+||+|+.+.....+|+.||.||||..||+.|+..|+.|+++ ..+++++..+++.+++++++..+|+||+|.|
T Consensus 316 ~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~--~at~eev~aaa~~aqi~~fi~~lP~gy~t~V 393 (497)
T COG5265 316 NSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP--DATAEEVGAAAEAAQIHDFIQSLPEGYDTGV 393 (497)
T ss_pred cCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc--cccHHHHHHHHHHhhhhHHHHhCchhhhccc
Confidence 99999999999999999999999999999999999999999999986 5678999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
||+|-.||||||||+||||+++++|+|++|||+||+||..+|+.|+..|++..+++|.++|+||++++..||.|+||++|
T Consensus 394 gerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g 473 (497)
T COG5265 394 GERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNG 473 (497)
T ss_pred chheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
+|+|.|+|++|..++
T Consensus 474 ~i~erg~h~~ll~~~ 488 (497)
T COG5265 474 RIVERGTHEELLAAG 488 (497)
T ss_pred EEEecCcHHHHHHcC
Confidence 999999998877663
No 31
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=7.5e-72 Score=642.32 Aligned_cols=410 Identities=21% Similarity=0.266 Sum_probs=333.5
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
++++++|.+.++++.+..++..+..++.+..++..+......+.+.+.+.|+++|+++||+||.++.+.++|.+..+...
T Consensus 1092 ~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~ 1171 (1560)
T PTZ00243 1092 VTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVY 1171 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 34556665444333333333344455666667777777888899999999999999999999999999999988777665
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQLIY-FGALFILCGG--SLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIE 160 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g--~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ 160 (426)
+..+.......+......++. +..+++.+++ ..+...+.+++|.+..++++...+..|+..+...+..++.+..+++
T Consensus 1172 ~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~e 1251 (1560)
T PTZ00243 1172 SCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVE 1251 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554443332222222222211 1111222222 2233345678888888888888999999999999999999999999
Q ss_pred HHHHhhcCccccc-CC-------------------------C-CCC---CCCCCCccEEEEeEEEEeCCCCCCcceeeeE
Q 014366 161 RLFDLTKFKSKVI-EK-------------------------P-DAV---SLDHINGDVKFCNISFKYADNMPLVLDQLNL 210 (426)
Q Consensus 161 ri~~~l~~~~~~~-~~-------------------------~-~~~---~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl 210 (426)
|+.++++..+++. .. . ... +..+..+.|+|+||+|+|+++.+++|+|+||
T Consensus 1252 Ri~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf 1331 (1560)
T PTZ00243 1252 RLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSF 1331 (1560)
T ss_pred HHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceE
Confidence 9999986332211 00 0 000 0111246799999999998765569999999
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMT 290 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~ 290 (426)
+|++||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||.||++||||||..+.
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~--- 1408 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL--- 1408 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997643
Q ss_pred CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC-CCEEEeeccCCCCCHHHHHHHHHH
Q 014366 291 KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN-SSVLILDEATSALDSRSELLVRQA 369 (426)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~-p~illlDEpts~LD~~~~~~i~~~ 369 (426)
+.++++++++++.+++++++.++|+||||.+|++|.+||||||||+||||||+++ |+|||||||||+||+++++.|++.
T Consensus 1409 ~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~ 1488 (1560)
T PTZ00243 1409 EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT 1488 (1560)
T ss_pred CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999996 899999999999999999999999
Q ss_pred HHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 370 VDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 370 l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|++..+++|+|+||||++++..||+|+||++|+|+|.|+|++|.+++
T Consensus 1489 L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~ 1535 (1560)
T PTZ00243 1489 VMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNR 1535 (1560)
T ss_pred HHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 99988889999999999999999999999999999999999887653
No 32
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.3e-72 Score=643.35 Aligned_cols=381 Identities=25% Similarity=0.370 Sum_probs=307.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q 014366 29 YLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQ--LIYFG 106 (426)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 106 (426)
++.+..++..+......+.+.+++.|+++|+++||+|+.++++.+++.+..+.. .+..........+.. ...+.
T Consensus 1072 ~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~----~~~~~~~~~~~~wl~~~l~~~~ 1147 (1622)
T PLN03130 1072 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNN----IRFTLVNMSSNRWLAIRLETLG 1147 (1622)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666677788999999999999999999999887766665544332 222222111111111 11112
Q ss_pred HHHHHHHHHHHHhCCC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCC---C
Q 014366 107 ALFILCGGSLLVSGGS-FD-----GCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKP---D 177 (426)
Q Consensus 107 ~~~~~~~g~~lv~~g~-l~-----~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~---~ 177 (426)
.+++++.+.+.+..+. .. .+.+..++.+...+..++..+...+..++.+..+++|+.++++.++|..... .
T Consensus 1148 ~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~ 1227 (1622)
T PLN03130 1148 GLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNR 1227 (1622)
T ss_pred HHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCC
Confidence 2233333444444332 11 2233333445556667777777888888999999999999998876642211 1
Q ss_pred CCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC
Q 014366 178 AVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257 (426)
Q Consensus 178 ~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~ 257 (426)
+.+..+..+.|+|+||+|+|+++.+++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++
T Consensus 1228 ~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~ 1307 (1622)
T PLN03130 1228 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFG 1307 (1622)
T ss_pred CCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCC
Confidence 11112335689999999999765457999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 258 LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 258 ~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
.+++|++|++|||||.+|++||||||.++. +.++++++++++.++++++++++|+||||.+|++|.+||||||||+|
T Consensus 1308 l~~LR~~IsiVpQdp~LF~GTIreNLd~~~---~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrla 1384 (1622)
T PLN03130 1308 LMDLRKVLGIIPQAPVLFSGTVRFNLDPFN---EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLS 1384 (1622)
T ss_pred HHHHHhccEEECCCCccccccHHHHhCcCC---CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHH
Confidence 999999999999999999999999998865 35789999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||||+||++|+|+|.|+|++|.+++
T Consensus 1385 LARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~ 1463 (1622)
T PLN03130 1385 LARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNE 1463 (1622)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 9999999999999999999999999999999999988899999999999999999999999999999999999887664
No 33
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2e-71 Score=638.96 Aligned_cols=381 Identities=24% Similarity=0.374 Sum_probs=310.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 32 ERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYFGALFIL 111 (426)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (426)
+..++..+......+.+.+.+.|+++|+++||+||.++++.+++.+..+...+..........+...... .++.++++
T Consensus 1072 ~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~--~~~~~~~~ 1149 (1495)
T PLN03232 1072 STSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLE--TLGGVMIW 1149 (1495)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 4445566667788899999999999999999999999877776665544332222111111111111111 11222233
Q ss_pred HHHHHHHh-CCCC----CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCC-CC--CCCCC
Q 014366 112 CGGSLLVS-GGSF----DGCS-LVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEK-PD--AVSLD 182 (426)
Q Consensus 112 ~~g~~lv~-~g~l----~~g~-l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-~~--~~~~~ 182 (426)
+.+.+.+. .+.+ ..+. +..++.+...+..|+..+...+..++.+..+++|+.++++.++|.... .. +.+..
T Consensus 1150 ~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~ 1229 (1495)
T PLN03232 1150 LTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGW 1229 (1495)
T ss_pred HHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCC
Confidence 33444443 2332 1122 233556677788899999999999999999999999999877654321 11 11111
Q ss_pred CCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh
Q 014366 183 HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262 (426)
Q Consensus 183 ~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r 262 (426)
+..+.|+++||+|+|+++.+++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|+++++.+++|
T Consensus 1230 p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR 1309 (1495)
T PLN03232 1230 PSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLR 1309 (1495)
T ss_pred CCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHH
Confidence 33467999999999975545799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
++|++|||||.+|++||||||.++. +.++++++++++.++++++++++|+|+||.+|++|.+||||||||+||||||
T Consensus 1310 ~~i~iVpQdp~LF~gTIr~NL~~~~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARAL 1386 (1495)
T PLN03232 1310 RVLSIIPQSPVLFSGTVRFNIDPFS---EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARAL 1386 (1495)
T ss_pred hhcEEECCCCeeeCccHHHHcCCCC---CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998764 4678999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCcc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||||+||++|+++|.|+|++|.++++
T Consensus 1387 Lr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~ 1461 (1495)
T PLN03232 1387 LRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDT 1461 (1495)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 999999999999999999999999999999888899999999999999999999999999999999998887654
No 34
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.4e-71 Score=631.65 Aligned_cols=398 Identities=30% Similarity=0.434 Sum_probs=343.1
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
+++|++||.|++++++++|+++++..++.+++++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+.....
T Consensus 190 i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~ 269 (1466)
T PTZ00265 190 IWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLY 269 (1466)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999888888888899999999999999999999999999999999887776
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGG--------SFDGCSLVSFITSLVFMIEPIQGVGKAYNEFK 153 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g--------~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~ 153 (426)
.+...+...+..+......+ .++..++++|+|++++..| .+++|.+++++.+....+.++..+...+..++
T Consensus 270 ~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~ 349 (1466)
T PTZ00265 270 SKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYM 349 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555554333333 2445677788999999875 57888888877766655566667777889999
Q ss_pred HHHHHHHHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCC-CCcceeeeEEEeCCCEEEEECCCCCcHHHHH
Q 014366 154 QGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLA 232 (426)
Q Consensus 154 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl 232 (426)
.+..+++|++++++.+++..........+ ....|+++||+|+|++.. .++|+|+||+|++||++||+||||||||||+
T Consensus 350 ~a~~a~~ri~~ii~~~~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl 428 (1466)
T PTZ00265 350 KSLEATNSLYEIINRKPLVENNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTIL 428 (1466)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHH
Confidence 99999999999998766532211111111 124799999999998542 3699999999999999999999999999999
Q ss_pred HHHhcCCCCCccEEEE-cCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCC----------------------
Q 014366 233 KLLLRLYDPLSGCILV-DDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLM---------------------- 289 (426)
Q Consensus 233 ~ll~g~~~p~~G~I~~-~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~---------------------- 289 (426)
++|+|+|+|++|+|++ ||.++.+++..++|++|+||+|+|.+|++||+|||.++...
T Consensus 429 ~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (1466)
T PTZ00265 429 KLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENK 508 (1466)
T ss_pred HHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccc
Confidence 9999999999999999 57999999999999999999999999999999999986410
Q ss_pred ---------------------------------CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 290 ---------------------------------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 290 ---------------------------------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
.+.++++++++++.+++++++..+|+||||.+|++|.+||||||||+
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRi 588 (1466)
T PTZ00265 509 NKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRI 588 (1466)
T ss_pred cccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHH
Confidence 12456789999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
+|||||+++|+|||||||||+||+.+++.+++.|+++. +++|+|+||||+++++.||+|++|++|
T Consensus 589 aIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 589 SIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999985 478999999999999999999999986
No 35
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=4e-71 Score=547.17 Aligned_cols=407 Identities=27% Similarity=0.378 Sum_probs=362.0
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
++|.++|+++++.++...+++.+.++-....++..++..+...+.+....-+.++.++|++.|......++|.+.+..++
T Consensus 153 v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L 232 (580)
T COG4618 153 VIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYL 232 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 56889999999999888887777776677777888888888999999999999999999999999999999999887777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri 162 (426)
....+..-....+....-.+ .+....++.+|+|+++.|++|.|.+++-..++.+...|+......|.++..++.+++|+
T Consensus 233 ~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl 312 (580)
T COG4618 233 SAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRL 312 (580)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 66555544444444433322 34467788899999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 163 FDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
.+++...++..+ .-+.+...+.+.++++++.=|+.++++++++||++++||.+||+||||||||||.|+|.|.++|.
T Consensus 313 ~~lL~~~p~~~~---~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~ 389 (580)
T COG4618 313 NELLAELPAAAE---RMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT 389 (580)
T ss_pred HHHHHhCccccC---CCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC
Confidence 999976554322 23344556889999999987777779999999999999999999999999999999999999999
Q ss_pred ccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccC
Q 014366 243 SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322 (426)
Q Consensus 243 ~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~ 322 (426)
+|.|++||-+++.++.+++-++|||+||+..||+|||.|||+-..+ +.+.+.+.++++.++.+|.+-++|+||||.+|
T Consensus 390 ~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~--~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG 467 (580)
T COG4618 390 SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGE--EADPEKVIEAARLAGVHELILRLPQGYDTRIG 467 (580)
T ss_pred CCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccc--cCCHHHHHHHHHHcChHHHHHhCcCCccCccC
Confidence 9999999999999999999999999999999999999999964332 46788899999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
+.|..|||||||||++||||+.||.+++||||.|+||.+.|+.+.+.|.+.+ ++.|+|+||||++.+..+|+|++|++|
T Consensus 468 ~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G 547 (580)
T COG4618 468 EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDG 547 (580)
T ss_pred CCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCC
Confidence 9999999999999999999999999999999999999999999999999886 578999999999999999999999999
Q ss_pred EEEEeccccccccC
Q 014366 402 KLEELNRSTLLGSN 415 (426)
Q Consensus 402 ~i~e~g~~~~l~~~ 415 (426)
++...|+.++...+
T Consensus 548 ~~~~FG~r~eVLa~ 561 (580)
T COG4618 548 RIAAFGPREEVLAK 561 (580)
T ss_pred hHHhcCCHHHHHHH
Confidence 99999998776543
No 36
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=7.8e-69 Score=616.74 Aligned_cols=406 Identities=17% Similarity=0.289 Sum_probs=325.9
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
++++++|+++++++.++.+++++..++.+..++..+......+.+.+++.|+++|+.+||+||.++.+.++|.+..+...
T Consensus 1019 ~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~ 1098 (1490)
T TIGR01271 1019 VVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHT 1098 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 45677787765544444444444455566667777777888899999999999999999999999999999988776443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLF 163 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~ 163 (426)
+..+.......+......++... +++.++.+.+....++.|.+..++++...+..++..+...+..+..+..+++|+.
T Consensus 1099 ~~~~~~~~~~~wl~~~~~~i~~~--~~~~~~~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~ 1176 (1490)
T TIGR01271 1099 ANWFLYLSTLRWFQMRIDIIFVF--FFIAVTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVF 1176 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222211111211111111111 0111111111112344555555666777788899999999999999999999999
Q ss_pred HhhcCcccccCCCCC-----------------CCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCC
Q 014366 164 DLTKFKSKVIEKPDA-----------------VSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGG 226 (426)
Q Consensus 164 ~~l~~~~~~~~~~~~-----------------~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGs 226 (426)
++++.+++....... .+..+..+.|+|+||+|+|+++.+++|+|+||+|++||++||||+|||
T Consensus 1177 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGs 1256 (1490)
T TIGR01271 1177 KFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGS 1256 (1490)
T ss_pred HHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCC
Confidence 999876653211100 001123468999999999986556899999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhch
Q 014366 227 GKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANA 306 (426)
Q Consensus 227 GKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l 306 (426)
|||||+++|+|+++ ++|+|++||.|+++++..++|++++||||+|.+|++||||||.... ..++++++++++.+++
T Consensus 1257 GKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~---~~tdeei~~aL~~~~L 1332 (1490)
T TIGR01271 1257 GKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE---QWSDEEIWKVAEEVGL 1332 (1490)
T ss_pred CHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc---CCCHHHHHHHHHHCCC
Confidence 99999999999997 7999999999999999999999999999999999999999996543 4578999999999999
Q ss_pred HHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccCh
Q 014366 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHL 386 (426)
Q Consensus 307 ~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~ 386 (426)
.+++.++|+|+||.++++|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|||+||||+
T Consensus 1333 ~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl 1412 (1490)
T TIGR01271 1333 KSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRV 1412 (1490)
T ss_pred HHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred HHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 387 ETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 387 ~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+++..||||+||++|+|+|.|+|++|.++
T Consensus 1413 ~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~ 1441 (1490)
T TIGR01271 1413 EALLECQQFLVIEGSSVKQYDSIQKLLNE 1441 (1490)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 99999999999999999999999887754
No 37
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.7e-68 Score=561.78 Aligned_cols=391 Identities=19% Similarity=0.215 Sum_probs=320.6
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchH--HHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEM--CESARFRRLAH 80 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~--~~~~~~~~~~~ 80 (426)
++|+++||.+++++++++|+.+++..+..++.++...+.++..+++++.+.|.+.|++++|+|+.++ ...++|.+..+
T Consensus 145 ~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~ 224 (555)
T TIGR01194 145 AYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESAN 224 (555)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHH
Confidence 4678999999999998889988888888888888888889999999999999999999999999953 45667776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 81 SDLCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAI 159 (426)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~ 159 (426)
+..+...+..............+ .....+.++++++ .|.+++|.+++++++...+..|+..++..+..++++..++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~ 301 (555)
T TIGR01194 225 NIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAM---FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIAC 301 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444433322222111111111 1111122223332 2789999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccccC---CCCCC-----CCCCCCccEEEEeEEEEeCCC---CCCcceeeeEEEeCCCEEEEECCCCCcH
Q 014366 160 ERLFDLTKFKSKVIE---KPDAV-----SLDHINGDVKFCNISFKYADN---MPLVLDQLNLHIRAGETVALIGPSGGGK 228 (426)
Q Consensus 160 ~ri~~~l~~~~~~~~---~~~~~-----~~~~~~~~i~~~~v~~~y~~~---~~~~l~~isl~i~~Ge~~~ivG~sGsGK 228 (426)
+|+.++++.+++... .+... +.....+.|+++||+|+|++. .+++|+|+||++++||+++|+|||||||
T Consensus 302 ~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGK 381 (555)
T TIGR01194 302 QRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGK 381 (555)
T ss_pred HHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCH
Confidence 999999763221100 01000 111123579999999999753 2359999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHH
Q 014366 229 STLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADE 308 (426)
Q Consensus 229 STLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (426)
|||+++|+|+++|++|+|.+||.++.+++..++|++++||+|++.+|++|+++|. . .+.++++++++++.+++++
T Consensus 382 STl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~--~~~~~~~~~~~~~~~~l~~ 456 (555)
T TIGR01194 382 STLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---G--EHASLDNAQQYLQRLEIAD 456 (555)
T ss_pred HHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---c--cchhHHHHHHHHHHcCCch
Confidence 9999999999999999999999999999999999999999999999999999995 1 2356788999999999999
Q ss_pred HHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHH-HH-cCCceEEEeccCh
Q 014366 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVD-RL-LGHHTVLVIAHHL 386 (426)
Q Consensus 309 ~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~-~~-~~~~tvi~itH~~ 386 (426)
+++.+|+|+||. .+||||||||++||||++++|+++|||||||+||+++++.+.+.+. .+ .+++|+|+||||+
T Consensus 457 ~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~ 531 (555)
T TIGR01194 457 KVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDD 531 (555)
T ss_pred hhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH
Confidence 999999999994 7999999999999999999999999999999999999999998764 34 3579999999999
Q ss_pred HHHHhcCEEEEEeCCEEEEe
Q 014366 387 ETVMMAKRVFLLDNGKLEEL 406 (426)
Q Consensus 387 ~~~~~~D~i~vl~~G~i~e~ 406 (426)
+.+..||+|++|++|+++|.
T Consensus 532 ~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 532 QYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999875
No 38
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-68 Score=590.16 Aligned_cols=413 Identities=26% Similarity=0.413 Sum_probs=351.6
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
++.+..|++.++++.+..++..+..++.+-.++..+-...+++.+.+++.|++.|+.|||+|+.++++.+++.+..+...
T Consensus 952 vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~ 1031 (1381)
T KOG0054|consen 952 VISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENS 1031 (1381)
T ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhH
Confidence 45567788777777777777777777888888888888999999999999999999999999999999999988776554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVS--GGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~--~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
+..+-.....-++..-..+ ++.++++..+...+. .+..+.|.+-..++|...+...++.+.....++.....|+||
T Consensus 1032 ~~~f~~~~a~RWla~Rle~--ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVER 1109 (1381)
T KOG0054|consen 1032 RAFFLSISANRWLAVRLEL--LGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVER 1109 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhH
Confidence 4433221111111111111 222222222222222 222667777777888889999999999999999999999999
Q ss_pred HHHhhcCcccccC---CCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 162 LFDLTKFKSKVIE---KPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 162 i~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+.++.+.|+|.+. ...+++..+..|.|+|+|++.+|.++.++||+||||+|+|||+|||||++|||||||+++|.|+
T Consensus 1110 v~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl 1189 (1381)
T KOG0054|consen 1110 VLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRL 1189 (1381)
T ss_pred HHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHh
Confidence 9999998776211 1112334566789999999999988778899999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcc
Q 014366 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318 (426)
Q Consensus 239 ~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~ 318 (426)
.+|.+|+|.|||.|+.++...++|++++++||||.||+||+|.|+ +|....+|++++++++.+++.+++.++|.|+|
T Consensus 1190 ~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NL---DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld 1266 (1381)
T KOG0054|consen 1190 VEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNL---DPFDEYSDDEIWEALERCQLKDVVSSLPGGLD 1266 (1381)
T ss_pred cCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcccccc---CcccccCHHHHHHHHHHhChHHHHhhCCcCCC
Confidence 999999999999999999999999999999999999999999999 55566789999999999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEE
Q 014366 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLL 398 (426)
Q Consensus 319 t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl 398 (426)
+.+.|+|.|+|-||||.+||||||+++++||+|||+|+++|++|...|++.|++..+++|||.|+||++++.+||||+||
T Consensus 1267 ~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVl 1346 (1381)
T KOG0054|consen 1267 SEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVL 1346 (1381)
T ss_pred ceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCEEEEeccccccccCcchhhh
Q 014366 399 DNGKLEELNRSTLLGSNHDSLVS 421 (426)
Q Consensus 399 ~~G~i~e~g~~~~l~~~~~~l~~ 421 (426)
|+|+++|.|+|..|.+++++++.
T Consensus 1347 d~G~v~EfdsP~~Ll~~~~S~f~ 1369 (1381)
T KOG0054|consen 1347 DAGRVVEFDSPAELLSDKDSLFS 1369 (1381)
T ss_pred eCCeEeecCChHHHHhCCcchHH
Confidence 99999999999999988777764
No 39
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.4e-66 Score=594.77 Aligned_cols=372 Identities=22% Similarity=0.318 Sum_probs=315.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 26 VIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQLIYF 105 (426)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (426)
+..++.++..+..++.++..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+......+....... ..
T Consensus 456 l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~-~~ 534 (1495)
T PLN03232 456 LQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNS-IP 534 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 34567788899999999999999999999999999999999999999999887766555444443333222111111 11
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCCCCCC
Q 014366 106 GALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHIN 185 (426)
Q Consensus 106 ~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~ 185 (426)
..+.++++|++++..|.+++|.++++++++..+..|+..++..+..+.++..+++|+.++++.+++...... ......
T Consensus 535 ~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~--~~~~~~ 612 (1495)
T PLN03232 535 VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNP--PLQPGA 612 (1495)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccC--CcCCCC
Confidence 123345678888889999999999999999999999999999999999999999999999976543211111 111123
Q ss_pred ccEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 186 GDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
+.|+++|++|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+. .+|++
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~ 680 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGS 680 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCc
Confidence 469999999999753 35799999999999999999999999999999999999999998763 35778
Q ss_pred eEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 265 i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
|+||+|+|++|++||+|||.++.+ .++++++++++.+++.++++.+|+|++|.+||+|.+|||||||||+||||+++
T Consensus 681 Iayv~Q~p~Lf~gTIreNI~fg~~---~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~ 757 (1495)
T PLN03232 681 VAYVPQVSWIFNATVRENILFGSD---FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS 757 (1495)
T ss_pred EEEEcCccccccccHHHHhhcCCc---cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhc
Confidence 999999999999999999999864 57889999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHH-HHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 345 NSSVLILDEATSALDSRSELLVRQA-VDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~-l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+|+|+|||||||+||+++++.+.+. +....+++|+|+|||+++.+..||+|++|++|++++.|+++++.++
T Consensus 758 ~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~ 829 (1495)
T PLN03232 758 NSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS 829 (1495)
T ss_pred CCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc
Confidence 9999999999999999999988765 5555578999999999999999999999999999999998877643
No 40
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.4e-65 Score=589.45 Aligned_cols=375 Identities=24% Similarity=0.337 Sum_probs=315.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 22 SMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQ 101 (426)
Q Consensus 22 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (426)
+++++..++.+++++..++.++..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+......+...+..
T Consensus 452 l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~ 531 (1622)
T PLN03130 452 LMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILN 531 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556778888889999999999999999999999999999999999999988766554443333322222211111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCC
Q 014366 102 LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSL 181 (426)
Q Consensus 102 ~~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~ 181 (426)
.. ...+.++++|++++..|.+++|.+++++++...+..|+..++..+..+.++.++++|+.++++.++..... .. ..
T Consensus 532 ~~-~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~-~~-~~ 608 (1622)
T PLN03130 532 SI-PVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLP-NP-PL 608 (1622)
T ss_pred HH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc-CC-cc
Confidence 11 11334556788888899999999999999999999999999999999999999999999999765432111 11 11
Q ss_pred CCCCccEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCc-cEEEEcCEeCCCCCHH
Q 014366 182 DHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS-GCILVDDHDVQNIRLD 259 (426)
Q Consensus 182 ~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~-G~I~~~g~~i~~~~~~ 259 (426)
....+.|+++|++|+|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+
T Consensus 609 ~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l----------- 677 (1622)
T PLN03130 609 EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI----------- 677 (1622)
T ss_pred cCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-----------
Confidence 1113469999999999753 3569999999999999999999999999999999999999999 89974
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
|++|+||+|+|++|++||+|||.||.+ .++++++++++.|+++++++.+|+|++|.+||+|.+|||||||||+||
T Consensus 678 --~~~Iayv~Q~p~LfngTIreNI~fg~~---~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLA 752 (1622)
T PLN03130 678 --RGTVAYVPQVSWIFNATVRDNILFGSP---FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMA 752 (1622)
T ss_pred --cCeEEEEcCccccCCCCHHHHHhCCCc---ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHH
Confidence 567999999999999999999999875 468899999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHH-HHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQ-AVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||++++|+|+|||||||+||+++++.+.+ .++...+++|+|+|||+++.+..||+|++|++|+++++|+++++.++
T Consensus 753 RAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~ 829 (1622)
T PLN03130 753 RAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN 829 (1622)
T ss_pred HHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc
Confidence 99999999999999999999999988764 56666678999999999999999999999999999999999877643
No 41
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.3e-63 Score=526.67 Aligned_cols=386 Identities=24% Similarity=0.273 Sum_probs=298.5
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCch---HHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAE---MCESARFRRLA 79 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e---~~~~~~~~~~~ 79 (426)
++|+++||.+++++++++|+.+++..++.++.++..++.++..+++++.+.|.++|+++++ ++.+ +.+.++|++..
T Consensus 140 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~ 218 (547)
T PRK10522 140 AYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDA 218 (547)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHH
Confidence 4578899999999999999998888889999999999999999999999999999999996 4443 34566777665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 80 HSDLCELLKKRKMKALIPQTVQLIYFG-ALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPA 158 (426)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a 158 (426)
++..+...+.................. ..+.++++... +..+.+.+..+..+...+..|+..+...+..++.+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a 295 (547)
T PRK10522 219 QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVA 295 (547)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554443333332222211111111111 11111112111 11233444444444455678999999999999999999
Q ss_pred HHHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 159 IERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 159 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.+|+.++++.+++.... ..... +..+.|+++||+|+|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+
T Consensus 296 ~~ri~~l~~~~~~~~~~-~~~~~-~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~ 372 (547)
T PRK10522 296 FNKLNKLALAPYKAEFP-RPQAF-PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL 372 (547)
T ss_pred HHHHHHHhccccccccc-ccccc-CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 99999987654322111 11111 113479999999999854 4699999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcc
Q 014366 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318 (426)
Q Consensus 239 ~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~ 318 (426)
|+|++|+|.+||+++++.+..++|++++||+|++.+|++|++|| +. ..++++++++++.+++.+++.. |+|.
T Consensus 373 ~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~---~~~~~~~~~~~~~~~l~~~~~~-~~~~- 444 (547)
T PRK10522 373 YQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GK---PANPALVEKWLERLKMAHKLEL-EDGR- 444 (547)
T ss_pred CCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cC---chHHHHHHHHHHHcCCchhhhc-cccC-
Confidence 99999999999999999999999999999999999999999998 21 3456677777777777665542 3332
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHHhcCEEE
Q 014366 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVMMAKRVF 396 (426)
Q Consensus 319 t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~ 396 (426)
.+|.+||||||||++||||++++|++||||||||+||+++++.+.+.+.+.. .++|+|+||||++.++.||+|+
T Consensus 445 ----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~ 520 (547)
T PRK10522 445 ----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLL 520 (547)
T ss_pred ----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEE
Confidence 1478999999999999999999999999999999999999999999987653 4789999999999999999999
Q ss_pred EEeCCEEEEec
Q 014366 397 LLDNGKLEELN 407 (426)
Q Consensus 397 vl~~G~i~e~g 407 (426)
+|++|+++|..
T Consensus 521 ~l~~G~i~e~~ 531 (547)
T PRK10522 521 EMRNGQLSELT 531 (547)
T ss_pred EEECCEEEEec
Confidence 99999999874
No 42
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.8e-61 Score=554.64 Aligned_cols=385 Identities=20% Similarity=0.269 Sum_probs=317.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 13 SLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKM 92 (426)
Q Consensus 13 ~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 92 (426)
+++.++++++++++..++.+++++.+++.++..++..+.+.|.++|+++||++++|+.+.+++++..++..+...+....
T Consensus 460 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~ 539 (1522)
T TIGR00957 460 VLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYL 539 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666677777889999999999999999999999999999999999999999999988776655443333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 014366 93 KALIPQTVQLIYFGALFILCGGSLLVS--GGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKS 170 (426)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~lv~--~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 170 (426)
..+.. +........+.++.++.+.+. .+.++.+..++.+.++..+..|+..+...+..+.++..+.+|+.++++.++
T Consensus 540 ~~~~~-~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~ 618 (1522)
T TIGR00957 540 HAVGT-FTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEE 618 (1522)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 22211 111111111222334555555 356888888888888888999999999999999999999999999997654
Q ss_pred cccCCCCCCCCC-CCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEc
Q 014366 171 KVIEKPDAVSLD-HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249 (426)
Q Consensus 171 ~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~ 249 (426)
+........... ...+.|+++|++|+|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++
T Consensus 619 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~ 698 (1522)
T TIGR00957 619 LEPDSIERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMK 698 (1522)
T ss_pred cccccccccccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEEC
Confidence 321110001111 1123699999999998644579999999999999999999999999999999999999999999998
Q ss_pred CEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCC
Q 014366 250 DHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329 (426)
Q Consensus 250 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LS 329 (426)
| +++||||+|++|++||+|||.++.+ .++++.+++++.+++.++++.+|+|++|.+|++|.+||
T Consensus 699 g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~---~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LS 762 (1522)
T TIGR00957 699 G-------------SVAYVPQQAWIQNDSLRENILFGKA---LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLS 762 (1522)
T ss_pred C-------------EEEEEcCCccccCCcHHHHhhcCCc---cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCC
Confidence 7 4999999999999999999999864 35677888899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHH---HcCCceEEEeccChHHHHhcCEEEEEeCCEEEEe
Q 014366 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDR---LLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEEL 406 (426)
Q Consensus 330 gGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~---~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~ 406 (426)
||||||++||||++++|+++|||||||+||+.+++.+.+.+.+ +.+++|+|+|||+++.+..||+|++|++|++++.
T Consensus 763 GGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~ 842 (1522)
T TIGR00957 763 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEM 842 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEee
Confidence 9999999999999999999999999999999999999999864 3457899999999999999999999999999999
Q ss_pred cccccccc
Q 014366 407 NRSTLLGS 414 (426)
Q Consensus 407 g~~~~l~~ 414 (426)
|+++++.+
T Consensus 843 g~~~~l~~ 850 (1522)
T TIGR00957 843 GSYQELLQ 850 (1522)
T ss_pred CCHHHHHh
Confidence 99877754
No 43
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-60 Score=527.77 Aligned_cols=386 Identities=24% Similarity=0.324 Sum_probs=322.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 13 SLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKM 92 (426)
Q Consensus 13 ~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 92 (426)
+++.++++.+++.+..+++++..+.+.+.++..++....++|.++||++||.|++|+.+.++.++..++..+...+....
T Consensus 344 a~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~ 423 (1381)
T KOG0054|consen 344 ALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYL 423 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566667777788999999999999999999999999999999999999999999999988877666554444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 014366 93 KALIPQTVQLIYFGALFILCGGSLL-VSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSK 171 (426)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~l-v~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 171 (426)
.++.......... .+.++.++++. ...+.++....++.++++..+..|+..++..+..+.++.++.+|+.+++..++.
T Consensus 424 ~~~~~~~~~~~p~-lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~ 502 (1381)
T KOG0054|consen 424 SALNSFLNFFSPV-LVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEEL 502 (1381)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 4433322221111 11222233333 446678887888888899999999999999999999999999999999976543
Q ss_pred ccCCCCCCCCCCCCccEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 014366 172 VIEKPDAVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (426)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g 250 (426)
........+..+....++++|.+|++++. ..+.|+||||+|++|+.+||+||.|||||+|+.+|+|..+..+|++.++|
T Consensus 503 ~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g 582 (1381)
T KOG0054|consen 503 DPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG 582 (1381)
T ss_pred CccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC
Confidence 22221111222334569999999999763 34599999999999999999999999999999999999999999999988
Q ss_pred EeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCCh
Q 014366 251 HDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (426)
Q Consensus 251 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSg 330 (426)
. ++||||+||+|++||||||.||.+ .++++.+++++.|++.+.++.+|.|..|.+||+|.+|||
T Consensus 583 s-------------iaYv~Q~pWI~ngTvreNILFG~~---~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSG 646 (1381)
T KOG0054|consen 583 S-------------VAYVPQQPWIQNGTVRENILFGSP---YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSG 646 (1381)
T ss_pred e-------------EEEeccccHhhCCcHHHhhhcCcc---ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcH
Confidence 4 999999999999999999999975 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHH-HHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccc
Q 014366 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQ-AVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 331 GqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~ 409 (426)
||||||+||||+++|+||++||+|.|++|.++.+.+.+ .++.+.++||+|+|||+++.++.||+|++|++|+|++.|++
T Consensus 647 GQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty 726 (1381)
T KOG0054|consen 647 GQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTY 726 (1381)
T ss_pred hHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCH
Confidence 99999999999999999999999999999997777665 46556678999999999999999999999999999999999
Q ss_pred cccccC
Q 014366 410 TLLGSN 415 (426)
Q Consensus 410 ~~l~~~ 415 (426)
+++.+.
T Consensus 727 ~el~~~ 732 (1381)
T KOG0054|consen 727 EELLKS 732 (1381)
T ss_pred HHHHhc
Confidence 888754
No 44
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.6e-60 Score=511.42 Aligned_cols=380 Identities=16% Similarity=0.188 Sum_probs=315.0
Q ss_pred eee-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 5 MLV-ISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 5 ~~~-~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
|+. ++|.+++++++.+|+..++.+++.+++.+..++.++..+++.+.+.|.++|+++||+|+.++.+.++|++..++..
T Consensus 233 L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~ 312 (659)
T TIGR00954 233 LLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLV 312 (659)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 444 8899999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-hC----CCCCHHHHHH-HHHH---HHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQLIYF---GALFILCGGSLLV-SG----GSFDGCSLVS-FITS---LVFMIEPIQGVGKAYNE 151 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~lv-~~----g~l~~g~l~~-~~~~---~~~~~~p~~~l~~~~~~ 151 (426)
+...+..+.......+..++.. ..+.++++|...+ .. |.+|.|.+++ |..+ +..++.|+..++..+.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~ 392 (659)
T TIGR00954 313 EHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRD 392 (659)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766665554444433321 2222333344233 22 6899888776 5544 55668999999999999
Q ss_pred HHHHHHHHHHHHHhhcCcccccCC------CCC-----------------CCCCCCCccEEEEeEEEEeCCCCCCcceee
Q 014366 152 FKQGEPAIERLFDLTKFKSKVIEK------PDA-----------------VSLDHINGDVKFCNISFKYADNMPLVLDQL 208 (426)
Q Consensus 152 ~~~~~~a~~ri~~~l~~~~~~~~~------~~~-----------------~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i 208 (426)
++++.++.+|+.++++.+++.... ... .......+.|+++||+|+|+++ +++|+|+
T Consensus 393 i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~i 471 (659)
T TIGR00954 393 MTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESL 471 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-Ceeeecc
Confidence 999999999999999754332100 000 0011123469999999999754 3699999
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCC
Q 014366 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDL 288 (426)
Q Consensus 209 sl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~ 288 (426)
||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|.+|++|++||+.++..
T Consensus 472 sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~ 540 (659)
T TIGR00954 472 SFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDS 540 (659)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCC
Confidence 999999999999999999999999999999999999998763 567999999999999999999998642
Q ss_pred C-----CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHH
Q 014366 289 M-----TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSE 363 (426)
Q Consensus 289 ~-----~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~ 363 (426)
. .+.++++++++++.+++++++++ |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||++++
T Consensus 541 ~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~ 618 (659)
T TIGR00954 541 SEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVE 618 (659)
T ss_pred hhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 1 22456788899999999999988 889999876 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 364 LLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 364 ~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+.+.+.+++. ++|+|+||||++.++.||++++|+.
T Consensus 619 ~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 619 GYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 9999999874 7899999999999999999999973
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1e-58 Score=533.14 Aligned_cols=388 Identities=19% Similarity=0.263 Sum_probs=321.8
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHH
Q 014366 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLC 84 (426)
Q Consensus 5 ~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 84 (426)
++++.++.+++.++++++++++..++++++.+.+++.+...++..+.+.|.++|+++||++++|+.+.+++++..++..+
T Consensus 216 L~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~ 295 (1490)
T TIGR01271 216 IWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELK 295 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33455667778888888888888899999999999999999999999999999999999999999999999888766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 014366 85 ELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPI-QGVGKAYNEFKQGEPAIERLF 163 (426)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~-~~l~~~~~~~~~~~~a~~ri~ 163 (426)
...+......+... ........+.++.++.+.+..+ ++++.++++++++..+..|+ ..++..+..+.++.++++||.
T Consensus 296 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~ 373 (1490)
T TIGR01271 296 LTRKIAYLRYFYSS-AFFFSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQ 373 (1490)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444433322211 1111122233444556665544 67888888888888887887 479999999999999999999
Q ss_pred HhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCC--------------------------------CCCcceeeeEE
Q 014366 164 DLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADN--------------------------------MPLVLDQLNLH 211 (426)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~--------------------------------~~~~l~~isl~ 211 (426)
+++..++...... ......++++|++|.|+.. .+++|+|+||+
T Consensus 374 ~fL~~~e~~~~~~-----~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~ 448 (1490)
T TIGR01271 374 DFLCKEEYKTLEY-----NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFK 448 (1490)
T ss_pred HHhcCcccccccc-----cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEE
Confidence 9997654321110 0112358899999988521 13589999999
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK 291 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~ 291 (426)
|++||+++|+||||||||||+++|+|+++|++|+|.++| .++||+|+|++|++||+|||.|+.+
T Consensus 449 i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~--- 512 (1490)
T TIGR01271 449 LEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS--- 512 (1490)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc---
Confidence 999999999999999999999999999999999999988 3999999999999999999999853
Q ss_pred CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHH-H
Q 014366 292 IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA-V 370 (426)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~-l 370 (426)
.+.++..++++.+++.++++.+|.|++|.+|++|.+|||||||||+||||++++|+++|||||||+||+.+++.+.+. +
T Consensus 513 ~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l 592 (1490)
T TIGR01271 513 YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCL 592 (1490)
T ss_pred cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 345667788888999999999999999999999999999999999999999999999999999999999999999975 6
Q ss_pred HHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 371 DRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 371 ~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
.++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.++
T Consensus 593 ~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~ 637 (1490)
T TIGR01271 593 CKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK 637 (1490)
T ss_pred HHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 666678999999999999989999999999999999998877643
No 46
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-60 Score=424.74 Aligned_cols=218 Identities=36% Similarity=0.502 Sum_probs=193.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC-CCHHHHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN-IRLDSLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~-~~~~~~r~~i 265 (426)
.|+++||+++|++. .+|+|||++|++||+++|+||||||||||++||.||.+|++|+|.++|.++.. .+...+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999864 59999999999999999999999999999999999999999999999987743 3567889999
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCC-CCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLM-TKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
|+|||+..||+. |+.||+.++... .+.+ .+...+.++++++.+..+..| .+||||||||||||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHHH
Confidence 999999999975 999999876321 1222 233456677788888777766 69999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
|||+.+|+++|+|||||+|||+...++++.++++. ++.|.|+|||.+.+++ .||||++|++|+++|+|+|++++.+++
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 99999999999999999999999999999999986 4789999999999997 699999999999999999999998764
No 47
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=5.6e-57 Score=519.33 Aligned_cols=394 Identities=20% Similarity=0.237 Sum_probs=319.6
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHH
Q 014366 5 MLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLC 84 (426)
Q Consensus 5 ~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 84 (426)
|+.+-++.+++.++++++++++..++.++..+.+++..+..++..+.+.|.++|+++||.+++|+.+.+++++..++..+
T Consensus 381 L~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~ 460 (1560)
T PTZ00243 381 LSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELR 460 (1560)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667777777777778888889999999999999999999999999999999999999999999999988776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 85 ELLKKRKMKALIPQTVQLIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFD 164 (426)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~ 164 (426)
...+......+...+..... ..+.++.++.+.+..+.++++.+++++.++..+..|+..++..+..+.++.++++||.+
T Consensus 461 ~l~~~~~~~~~~~~~~~~~p-~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~ 539 (1560)
T PTZ00243 461 YLRDVQLARVATSFVNNATP-TLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRIST 539 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444433333222221111 12222345677788899999999999999999999999999999999999999999999
Q ss_pred hhcCccccc----C--C---------C--C------C--------CC---------------------------CCCCCc
Q 014366 165 LTKFKSKVI----E--K---------P--D------A--------VS---------------------------LDHING 186 (426)
Q Consensus 165 ~l~~~~~~~----~--~---------~--~------~--------~~---------------------------~~~~~~ 186 (426)
+++.++... + . . . . .. .....+
T Consensus 540 fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1560)
T PTZ00243 540 FLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSP 619 (1560)
T ss_pred HHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccc
Confidence 997543100 0 0 0 0 0 00 000112
Q ss_pred cEEEEeEEEEeCC--------------------------------------CCCCcceeeeEEEeCCCEEEEECCCCCcH
Q 014366 187 DVKFCNISFKYAD--------------------------------------NMPLVLDQLNLHIRAGETVALIGPSGGGK 228 (426)
Q Consensus 187 ~i~~~~v~~~y~~--------------------------------------~~~~~l~~isl~i~~Ge~~~ivG~sGsGK 228 (426)
.+.++|++++++. +.+++|+|+||+|++||+++|+|||||||
T Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGK 699 (1560)
T PTZ00243 620 SVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGK 699 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcH
Confidence 4667777665321 12358999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHH
Q 014366 229 STLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADE 308 (426)
Q Consensus 229 STLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (426)
|||+++|+|+++|++|+|.++ ++|+|+||+|++|++|++|||.++.+ .+.+++.++++.+++++
T Consensus 700 STLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~---~~~~~~~~~~~~~~l~~ 763 (1560)
T PTZ00243 700 STLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDE---EDAARLADAVRVSQLEA 763 (1560)
T ss_pred HHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCCh---hhHHHHHHHHHHhhhHH
Confidence 999999999999999999862 46999999999999999999998753 34566788889899999
Q ss_pred HHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHH-HHHHcCCceEEEeccChH
Q 014366 309 FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA-VDRLLGHHTVLVIAHHLE 387 (426)
Q Consensus 309 ~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~-l~~~~~~~tvi~itH~~~ 387 (426)
+++.+|+|++|.+|++|.+|||||||||+||||++.+|+++|||||||+||+.+.+.+.+. +....+++|+|++||+++
T Consensus 764 ~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~ 843 (1560)
T PTZ00243 764 DLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVH 843 (1560)
T ss_pred HHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH
Confidence 9999999999999999999999999999999999999999999999999999998888764 333445789999999999
Q ss_pred HHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 388 TVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 388 ~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
.+..||+|++|++|++++.|+++++.++
T Consensus 844 ~~~~ad~ii~l~~G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 844 VVPRADYVVALGDGRVEFSGSSADFMRT 871 (1560)
T ss_pred HHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999998876543
No 48
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-57 Score=424.95 Aligned_cols=219 Identities=34% Similarity=0.510 Sum_probs=193.6
Q ss_pred EEEEeEEEEeCCC---CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HH
Q 014366 188 VKFCNISFKYADN---MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SL 261 (426)
Q Consensus 188 i~~~~v~~~y~~~---~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~ 261 (426)
|++++|++.|+.+ ...+|+||||+|++||++||+|+||||||||++|+.++.+|++|+|.+||+++..++.. ..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999862 24699999999999999999999999999999999999999999999999999887755 45
Q ss_pred hcceEEEecCCCCCc-ccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 262 RRHVGLVSQDITLFS-GTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 262 r~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
|++||++||++.|++ .||+||++|+....+.+. +++.+.++.+++.++.+..| .+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 788999999999996 699999999765544443 34455666666666665554 79999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+|||||+.+|+|||.|||||+|||++.+.|++.|+++.+ +-||++|||.++.++ .||||.||++|+++|+|+..+++
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999999998853 679999999999997 79999999999999999999888
Q ss_pred cCcc
Q 014366 414 SNHD 417 (426)
Q Consensus 414 ~~~~ 417 (426)
.+++
T Consensus 231 ~~Pk 234 (339)
T COG1135 231 ANPK 234 (339)
T ss_pred cCcc
Confidence 8864
No 49
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-57 Score=412.92 Aligned_cols=218 Identities=34% Similarity=0.577 Sum_probs=195.2
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+|+||||+|.+ +.+++|+||+|++||+++++|||||||||++|+|.|+++|++|+|++||+++++++..++|++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 789999999985 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCCCCHH----HHHHHHHHhchH--HHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTKIDME----RVEHTARTANAD--EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~--~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
|-|...||+. ||.|||.+-....+++.+ ++.+.++.++++ +|.++.| .+|||||+|||.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHH
Confidence 9999999975 999999875444445544 445566666664 4666655 799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccccCcc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
||+.+|+++++|||+++|||.++..+++.+.++.+ ++|+|+||||++++ +.+|||.+|++|++++.++|+++..++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999988754 68999999999876 6899999999999999999999988874
Q ss_pred h
Q 014366 418 S 418 (426)
Q Consensus 418 ~ 418 (426)
.
T Consensus 229 n 229 (309)
T COG1125 229 N 229 (309)
T ss_pred H
Confidence 3
No 50
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.4e-55 Score=423.80 Aligned_cols=227 Identities=25% Similarity=0.463 Sum_probs=211.3
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
+.|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++..++..++|+.+
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 3689999999997544569999999999999999999999999999999999997 789999999999988888999999
Q ss_pred EEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 266 ~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
+|+||++.+|++|++||+.... ..++++++++++.+++.++++.+|.++++.++++|.+||||||||++||||++++
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~---~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYG---KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred EEECCCcccchhhHHHHhhhcc---CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999996432 2356788999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|+++||||||++||+.+++.+.+.|++...++|+|+||||++++..||||++|++|++++.|+|+++.+++
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~ 227 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEK 227 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCc
Confidence 99999999999999999999999999887789999999999999889999999999999999998877654
No 51
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-56 Score=397.91 Aligned_cols=223 Identities=32% Similarity=0.481 Sum_probs=200.8
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCc-----cEEEEcCEeCCC--CCH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS-----GCILVDDHDVQN--IRL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~-----G~I~~~g~~i~~--~~~ 258 (426)
..++++||++.|++. .+|+|||++|++++++|++||||||||||++++.++.+..+ |+|.++|+++.+ .+.
T Consensus 6 ~~~~~~~l~~yYg~~--~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECch--hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 358999999999854 59999999999999999999999999999999999998876 999999999976 467
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.++|+++|+|||.|..|+.||+||+.||.+.++.. ++.++++++.+.+++.+.. .+.+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHH
Confidence 89999999999999999999999999986544332 3557888999998876643 345678899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|+||||||+-+|+|||||||||+|||.+..+|.+.+.+++++-|||+|||++..+. .+|+..++..|+++|.|+.+.++
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 99999999999999999999999999999999999999998899999999998775 79999999999999999999999
Q ss_pred cCcc
Q 014366 414 SNHD 417 (426)
Q Consensus 414 ~~~~ 417 (426)
.+++
T Consensus 237 ~~P~ 240 (253)
T COG1117 237 TNPK 240 (253)
T ss_pred cCcc
Confidence 8864
No 52
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-54 Score=421.90 Aligned_cols=224 Identities=33% Similarity=0.557 Sum_probs=203.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+++|++.. +++++||+|++||+++|+|||||||||||++|+||.+|++|+|.++|.+++++++++ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999998642 999999999999999999999999999999999999999999999999999988764 7899
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCC----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
+|||++.||+. ||+|||.|+....+. -++++.++++..++.+++++.| .+||||||||||||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHH
Confidence 99999999975 999999998654332 2466788889999999988877 6999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcch
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
|+++|+++|||||+|+||+..+..+...|+++.+ +.|+|.||||..++. .+|||.||++|+|.+.|+|.++++++..
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 9999999999999999999999999999988754 579999999997775 8999999999999999999999999988
Q ss_pred hhhcCcC
Q 014366 419 LVSAGLV 425 (426)
Q Consensus 419 l~~~~~~ 425 (426)
.+.++++
T Consensus 228 ~fVA~Fi 234 (338)
T COG3839 228 LFVAGFI 234 (338)
T ss_pred hhhhhhc
Confidence 8888765
No 53
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.7e-54 Score=406.75 Aligned_cols=217 Identities=33% Similarity=0.456 Sum_probs=195.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++++|++|+|++ +++++|+||+|++||+++|+||||||||||+|+|+|+.+|.+|+|++||+++.+++.+++.++++
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 4789999999985 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCC-CcccHHHHHcCCCCC--------CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 267 LVSQDITL-FSGTVAENIGYRDLM--------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 267 ~v~Q~~~l-f~~ti~eni~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
||||++.. |..||+|-+.+|+.. ...+.+.+.++++.+++.++.++ ...+||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHHH
Confidence 99999765 566999999987532 11233457788999999888766 45799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHH-HhcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||+++|++|+||||||+||..++.++++.++++. ++.|+|+++||++.+ ++||++++|++|+++..|+|++..+
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999986 368999999999887 5899999999999999999998877
Q ss_pred Cc
Q 014366 415 NH 416 (426)
Q Consensus 415 ~~ 416 (426)
.+
T Consensus 229 ~e 230 (258)
T COG1120 229 EE 230 (258)
T ss_pred HH
Confidence 64
No 54
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-54 Score=422.20 Aligned_cols=225 Identities=32% Similarity=0.535 Sum_probs=201.8
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..++++||+++|++ ..+++|+||+|++||+++|+|||||||||+|++|+||..|++|+|.++|+++..+++. ++.|
T Consensus 4 ~~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 36999999999984 4699999999999999999999999999999999999999999999999999998765 6789
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCC-CC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
++|||+..||+. ||+|||.||..... .. .+++.++++.+++.++..+.| .+|||||+||||||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence 999999999965 99999999865211 22 247788899999999888766 79999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccccCc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|||+.+|++||||||.|+||.+-+..++..++++.+ +.|.|+||||.+++ ..+|||.||++|+|.+.|+|++++.++
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 999999999999999999999999999999988743 68999999999776 589999999999999999999999998
Q ss_pred chhhhcCcC
Q 014366 417 DSLVSAGLV 425 (426)
Q Consensus 417 ~~l~~~~~~ 425 (426)
...+.+.++
T Consensus 229 ~~~fVA~Fi 237 (352)
T COG3842 229 ATRFVADFI 237 (352)
T ss_pred chHHHHHHh
Confidence 887766543
No 55
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-53 Score=417.71 Aligned_cols=227 Identities=29% Similarity=0.416 Sum_probs=195.6
Q ss_pred CCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--C
Q 014366 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--I 256 (426)
Q Consensus 184 ~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~--~ 256 (426)
..+.|+++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++.. .
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 346799999999997544569999999999999999999999999999999999996 579999999999873 3
Q ss_pred CHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHH-----HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 257 RLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER-----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 257 ~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
+...+|+.++||||+|++|++|++||+.++......++++ +..+++.+++ +.++++.+++++.+||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LSgG 229 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALSGG 229 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCCHH
Confidence 4457788999999999999999999998754222222222 3444555543 335567888999999999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHh-cCEEEEEeCCEEEEecccc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMM-AKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~D~i~vl~~G~i~e~g~~~ 410 (426)
||||++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++++.. ||||++|++|+++|.|+++
T Consensus 230 qkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~ 309 (329)
T PRK14257 230 QQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998778999999999999875 9999999999999999999
Q ss_pred ccccCcc
Q 014366 411 LLGSNHD 417 (426)
Q Consensus 411 ~l~~~~~ 417 (426)
++.+++.
T Consensus 310 ~l~~~~~ 316 (329)
T PRK14257 310 TIFIHPK 316 (329)
T ss_pred HHhcCCC
Confidence 8877654
No 56
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.6e-53 Score=388.77 Aligned_cols=207 Identities=36% Similarity=0.513 Sum_probs=176.3
Q ss_pred EEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---H-
Q 014366 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---L- 261 (426)
Q Consensus 188 i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~- 261 (426)
++++||++.|..+. ..+|+++||+|++||+++|+||||||||||+++|.|+.+|++|.|.++|+++..++.++ +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999997542 36899999999999999999999999999999999999999999999999999887543 3
Q ss_pred hcceEEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
|++||||||+..|++. |++||+.++....... .+.....++.+++.+.... ..+.+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~----------~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLK----------KKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhcc----------CCchhcCHHHHHHH
Confidence 4679999999999865 9999998532222222 3344555666666655541 23579999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHHhcCEEEEEeCCEEE
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDNGKLE 404 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~G~i~ 404 (426)
||||||+.+|++++.||||++||+++.+.|++.++++. .++|+|+||||+..+..|||++.|++|++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 99999999999999999999999999999999999984 368999999999999999999999999954
No 57
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.2e-52 Score=397.65 Aligned_cols=226 Identities=43% Similarity=0.708 Sum_probs=205.6
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++..+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 47899999997533469999999999999999999999999999999999999999999999999887777778889999
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
+||++.+|+.|++||+.++.. ....+++...++..++.++++.+|.|+++.++.++.+||||||||++||||++.+|+
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EcCCchhccchHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 999999998899999987543 233455666778888999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 348 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+++++.++
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 99999999999999999999999998767899999999999988999999999999999998776655
No 58
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.9e-53 Score=393.26 Aligned_cols=215 Identities=32% Similarity=0.447 Sum_probs=189.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++|+|++. ++|+||||++++|++++|+||||||||||+|+|+|+++|++|+|.++|.+...... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 58999999999864 49999999999999999999999999999999999999999999999988765422 46799
Q ss_pred EEecCCC---CCcccHHHHHcCCCCCC--------CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 267 LVSQDIT---LFSGTVAENIGYRDLMT--------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 267 ~v~Q~~~---lf~~ti~eni~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
||||... -|+.||+|-+.++.... ..+.+++.++++.+++.++.++ +..+|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-----------~i~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-----------QIGELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-----------cccccCcHHHHH
Confidence 9999664 47889999998874321 1235788999999999988765 457999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+.|||||+++|++|+|||||+|+|+.++..+.+.|+++++ ++||++||||++.+. +||+|+.| ++++...|++++..
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhcc
Confidence 9999999999999999999999999999999999999964 799999999999885 89999999 56788999999888
Q ss_pred cCcch
Q 014366 414 SNHDS 418 (426)
Q Consensus 414 ~~~~~ 418 (426)
+.+..
T Consensus 227 ~~~~l 231 (254)
T COG1121 227 TEENL 231 (254)
T ss_pred CHHHH
Confidence 76543
No 59
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.5e-53 Score=384.03 Aligned_cols=219 Identities=32% Similarity=0.505 Sum_probs=191.0
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHh
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLR 262 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r 262 (426)
..|++++|+++|+++ .+++|+||+|++||+++|+||||||||||+|+|.|+.+|++|+|+++|+++.+++.. ++|
T Consensus 7 ~~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 369999999999864 699999999999999999999999999999999999999999999999999988765 458
Q ss_pred cceEEEecCCCCCcc-cHHHHHcCCCC-CCCCCHHHHH----HHHHHhchHHH-HHhcCCCcccccCCCCCCCChHHHHH
Q 014366 263 RHVGLVSQDITLFSG-TVAENIGYRDL-MTKIDMERVE----HTARTANADEF-VRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~~-ti~eni~~~~~-~~~~~~~~~~----~~~~~~~l~~~-~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
+++|++||...||+. ||+||+.|... +.+.+++.++ ..++.+|+... .+.+| ++|||||++|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 899999999999965 99999998543 2234444433 34556666555 44444 7999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
+|||||++.||+++++|||||||||.+...+-+.|+++.+ +.|+++||||++.+. .|||++++.+|+|+..|+++++
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999864 689999999998885 7999999999999999999988
Q ss_pred ccCcc
Q 014366 413 GSNHD 417 (426)
Q Consensus 413 ~~~~~ 417 (426)
.+.++
T Consensus 234 ~~sd~ 238 (263)
T COG1127 234 LASDD 238 (263)
T ss_pred HhCCC
Confidence 87543
No 60
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7e-52 Score=388.34 Aligned_cols=219 Identities=37% Similarity=0.646 Sum_probs=203.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++..+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 58999999999754346999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
|+||++.+|+.|++||+.+... ...+++.++++..++.+++.++|.|+++.+++.+.+||||||||++||||++.+|
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGE---YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EECCCCccccchHHHHhCcCCC---CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999998999999976532 3456778889999999999999999999999999999999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEecc
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~ 408 (426)
+++||||||++||+.+++.+.+.|+++.++.|+|++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999876789999999999998899999999999998875
No 61
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.4e-52 Score=391.48 Aligned_cols=227 Identities=54% Similarity=0.807 Sum_probs=206.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++...++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 47899999997543369999999999999999999999999999999999999999999999999887777777889999
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
++|++.+|+.|++||+.++... ...++....++..++.++++.+|.|+++.++.++.+||||||||++|||||+.+|+
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPG--ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred eCCCCeeccccHHHHhhccCCC--CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886432 24456667778888999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 348 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
++||||||++||+.+++.+.+.|+++.++.|+|++||+++.+..||++++|++|++++.|+++++....
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcC
Confidence 999999999999999999999999987788999999999998889999999999999999887765443
No 62
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-52 Score=392.88 Aligned_cols=221 Identities=36% Similarity=0.535 Sum_probs=198.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC-CCCHHHHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ-NIRLDSLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~-~~~~~~~r~~i 265 (426)
.++++|++|+|+++ .++++++||+|++||.++|+|+||||||||+++++|+++|++|.|.++|.++. ..+..++|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 48899999999876 67999999999999999999999999999999999999999999999999987 36778899999
Q ss_pred EEEecCC--CCCcccHHHHHcCCCCCCCCCHH----HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDI--TLFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
|||+|+| .+|..||.|.++|+......+.+ ++.++++.+++.++.++.| .+||||||||+|||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 58899999999998765455543 4567777888877766544 79999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
.+|+.+|++||||||||+||+..++.+.+.++++.+ ++|+|++|||++.+. .|||+++|++|+++.+|+|+++.++.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 999999999999999999999999999999999864 479999999999986 69999999999999999998888775
Q ss_pred chh
Q 014366 417 DSL 419 (426)
Q Consensus 417 ~~l 419 (426)
+.+
T Consensus 231 ~~l 233 (235)
T COG1122 231 ELL 233 (235)
T ss_pred hhh
Confidence 433
No 63
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.6e-52 Score=368.55 Aligned_cols=208 Identities=38% Similarity=0.524 Sum_probs=187.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHhcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLRRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r~~ 264 (426)
|+|+||++.|+++ +++|+||||+|++||++-|+||||||||||+|+|++..+|++|+|.++|.|+..++.+ .+|++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7899999999987 6799999999999999999999999999999999999999999999999999887654 57999
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
||+||||..|.+. ||+||++|.....+.. .+++.++++.+++.+-...+| .+|||||+||++||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHHH
Confidence 9999999998754 9999999865433333 356678899999999888888 69999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
||++.+|++||.||||.+|||....+|++.+.++. .|.||+|.||+.+.+. .--|++.+++|+++...
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999999999999999985 4889999999999997 46799999999998654
No 64
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-52 Score=385.68 Aligned_cols=199 Identities=35% Similarity=0.508 Sum_probs=176.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.+++++|+++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4889999999986 4699999999999999999999999999999999999999999999999988543 45699
Q ss_pred EEecCCCCCc-ccHHHHHcCCCCCCCC----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFS-GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~-~ti~eni~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
||||++.||+ .||+||+.++...... ..+++.+.++.+++.++-++.| .+||||||||+|||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHH
Confidence 9999999996 5999999987543221 2345777888888888888877 6999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHH-HhcCEEEEEeC--CEE
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETV-MMAKRVFLLDN--GKL 403 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~D~i~vl~~--G~i 403 (426)
|+.+|++|+||||+++||+.|+..+++.+.++.+ ++||++||||++++ ..+|||++|.+ |+|
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 9999999999999999999999999999988753 58999999999877 47999999999 455
No 65
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-52 Score=389.92 Aligned_cols=225 Identities=43% Similarity=0.724 Sum_probs=205.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 58999999999743 35999999999999999999999999999999999999999999999999988777777888999
Q ss_pred EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
|+||++.+|+.|++||+.++... ...+++.++++..++.++++.+|.|+++.++....+||||||||++|||||+.+|
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPN--ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCC--CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999988999999876432 2345677788888999999999999999999999999999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEecccccccc
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++.+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999876789999999999988899999999999999887766543
No 66
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.6e-52 Score=413.62 Aligned_cols=218 Identities=32% Similarity=0.456 Sum_probs=187.4
Q ss_pred EEEEeEEEEeCCC--CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---Hh
Q 014366 188 VKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---LR 262 (426)
Q Consensus 188 i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~r 262 (426)
|+++||+++|+.+ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 236999999999999999999999999999999999999999999999999998876544 47
Q ss_pred cceEEEecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 263 RHVGLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
++|+|+||++.+|+ .|++||+.++......+ .+++.++++.+++.++.+. .+.+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~-----------~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDS-----------YPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 78999999999996 69999998753221222 2334556666666655544 45799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||+.+|++||||||||+||+.+++.+++.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999999853 689999999999985 799999999999999999987765
Q ss_pred Cc
Q 014366 415 NH 416 (426)
Q Consensus 415 ~~ 416 (426)
++
T Consensus 231 ~p 232 (343)
T TIGR02314 231 HP 232 (343)
T ss_pred CC
Confidence 53
No 67
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.8e-51 Score=394.44 Aligned_cols=232 Identities=31% Similarity=0.523 Sum_probs=210.7
Q ss_pred CCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc
Q 014366 184 INGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263 (426)
Q Consensus 184 ~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~ 263 (426)
..+.|+++|++++|++..+.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+.+...+++
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 45689999999999764346999999999999999999999999999999999999999999999999998887778889
Q ss_pred ceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc
Q 014366 264 HVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
.++|++|++.+|++|++||+..... ...+++..+++..++.++++.+|.|+++.+++.+.+||||||||++||||++
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999965421 2345667788888999999999999999999999999999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCcch
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
++|+++||||||++||+.+++.+.+.++++.++.|+|++||+++.+..||||++|++|++++.|+++++.++.+.
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~ 247 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDG 247 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccch
Confidence 999999999999999999999999999987668899999999999988999999999999999998877665443
No 68
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-52 Score=379.14 Aligned_cols=215 Identities=34% Similarity=0.467 Sum_probs=189.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC---HHHHhc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDSLRR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~---~~~~r~ 263 (426)
.|+++||++.||++ +.+|+||||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|.++..++ .+++|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 58999999999865 57999999999999999999999999999999999999999999999999988776 456788
Q ss_pred ceEEEecCCCCCcc-cHHHHHcCCCCC------------CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCCh
Q 014366 264 HVGLVSQDITLFSG-TVAENIGYRDLM------------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eni~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSg 330 (426)
++||+||++.|.+. ||.+|+..|... ...+.....++++++++.+..-. +..+|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCCc
Confidence 99999999999865 999999766422 12233445667777887776544 5689999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 331 GqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
||+|||+|||||+++|+++|.|||+|+|||.+.+.|++.|++.. .+.|+|+.-|+++.++ +||||+-|++|+|+..|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999999885 4689999999999986 89999999999999999
Q ss_pred cccccc
Q 014366 408 RSTLLG 413 (426)
Q Consensus 408 ~~~~l~ 413 (426)
++.++.
T Consensus 231 ~~~el~ 236 (258)
T COG3638 231 PASELT 236 (258)
T ss_pred Chhhhh
Confidence 997754
No 69
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.5e-51 Score=384.33 Aligned_cols=219 Identities=42% Similarity=0.704 Sum_probs=199.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++...++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 58999999999753346999999999999999999999999999999999999999999999999987766666778899
Q ss_pred EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
|++|++.+|+.|++||+.++... .+.+++.+.++..++.+.++.+|.|++|.+.+...+||||||||++||||++.+|
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCC--CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999888999999875432 2355677888899999999999999999999999999999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEec
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELN 407 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g 407 (426)
++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999986568999999999988889999999999998754
No 70
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3.4e-51 Score=388.05 Aligned_cols=227 Identities=48% Similarity=0.734 Sum_probs=204.1
Q ss_pred EEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 188 VKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 188 i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
++++|++++|++. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999753 246999999999999999999999999999999999999999999999999987777667778899
Q ss_pred EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
|++|++.+|+.|++||+.++... ...++....++..++.+++..+|.|+++.++....+||||||||++||||++.+|
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p 158 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPD--ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNP 158 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCC--CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999888999999886432 2345566677778899999999999999999999999999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++....
T Consensus 159 ~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 159 KILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 9999999999999999999999999887678999999999998899999999999999999887765543
No 71
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-51 Score=386.15 Aligned_cols=225 Identities=41% Similarity=0.687 Sum_probs=205.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
++++|++++|++. ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999643 359999999999999999999999999999999999999999999999999988777788889999
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
++|++.+|+.|++||+.++... .+.+++...++..++.+++..+|.|+++.++.++.+||||||||++|||||+++|+
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886432 34455677788889999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 348 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
++||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++..+
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~ 225 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK 225 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 99999999999999999999999988667899999999999988999999999999999987766543
No 72
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-52 Score=389.93 Aligned_cols=226 Identities=33% Similarity=0.480 Sum_probs=195.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~i 265 (426)
+|+++|+++.|+.. .+++|||++|+.||.+|+.||||||||||+++|+|+..|++|.|.++|+.+.+.+. ....++|
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~V 79 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKV 79 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcce
Confidence 47899999999864 58999999999999999999999999999999999999999999999994333322 2334679
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCCC------CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLMT------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
|||||+..+|+ .||+|||+||.... .....++.+.++.+++..+-++.| .+||||||||||+
T Consensus 80 GfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRVAL 148 (345)
T COG1118 80 GFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRVAL 148 (345)
T ss_pred eEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHHHH
Confidence 99999999995 59999999986322 122456677788888888777766 6999999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccccC
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||||+.+|++||||||+++||..-++++.+-|+++.. +.|+++||||.+++ +.||||++|++|+|...|+|++++.+
T Consensus 149 ARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~ 228 (345)
T COG1118 149 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228 (345)
T ss_pred HHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence 9999999999999999999999999999999998753 67999999999887 58999999999999999999999999
Q ss_pred cchhhhcCcC
Q 014366 416 HDSLVSAGLV 425 (426)
Q Consensus 416 ~~~l~~~~~~ 425 (426)
+.+-+.++++
T Consensus 229 P~s~fV~~f~ 238 (345)
T COG1118 229 PASRFVARFL 238 (345)
T ss_pred CCccceeccc
Confidence 8887776653
No 73
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-51 Score=376.04 Aligned_cols=219 Identities=35% Similarity=0.451 Sum_probs=186.4
Q ss_pred cEEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC-HHHHhc
Q 014366 187 DVKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR-LDSLRR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~-~~~~r~ 263 (426)
.++++|+++.|+.+. .+++++|||+|.+||++||+|+||||||||.++|+|+.+|++|+|.++|.++.... ....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 589999999998652 14999999999999999999999999999999999999999999999998776543 235678
Q ss_pred ceEEEecCCC--CCc-ccHHHHHcCCCCCCC--CCHHHHHHHHHHhchH-HHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 264 HVGLVSQDIT--LFS-GTVAENIGYRDLMTK--IDMERVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 264 ~i~~v~Q~~~--lf~-~ti~eni~~~~~~~~--~~~~~~~~~~~~~~l~-~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
.+.+|||||. +-+ .||++-|.=+....+ ...+++.++++.+++. +|.++.| .+|||||+||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 8999999997 444 388887753322111 2345577888888884 4666655 699999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCC--ceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH--HTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~--~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||.-+|++||||||||+||...+..|++.|.+++++ -|.|+||||++.+. .||||+||++|+++|.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999999999999999999999999999999999998754 59999999999997 699999999999999999888776
Q ss_pred Cc
Q 014366 415 NH 416 (426)
Q Consensus 415 ~~ 416 (426)
++
T Consensus 232 ~~ 233 (252)
T COG1124 232 HP 233 (252)
T ss_pred CC
Confidence 63
No 74
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-51 Score=407.19 Aligned_cols=219 Identities=30% Similarity=0.479 Sum_probs=190.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|+++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.++. ++.|+
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 48999999999422 3699999999999999999999999999999999999999999999999999877654 47899
Q ss_pred EEecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
||||++.+|+ .||+||+.|+......+ .+++.++++.+++.++.++.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 59999999864322222 234566777777777766655 6999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcch
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
|+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 9999999999999999999999999999998753 689999999998775 7999999999999999999988777644
Q ss_pred h
Q 014366 419 L 419 (426)
Q Consensus 419 l 419 (426)
.
T Consensus 229 ~ 229 (356)
T PRK11650 229 T 229 (356)
T ss_pred H
Confidence 3
No 75
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-50 Score=399.30 Aligned_cols=228 Identities=26% Similarity=0.373 Sum_probs=188.8
Q ss_pred ccEEEEeEEEEeCCC---CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC------
Q 014366 186 GDVKFCNISFKYADN---MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI------ 256 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~---~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~------ 256 (426)
..|+++|++|+|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 359999999999743 13599999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhcceEEEecCC--CCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcc-cccCC
Q 014366 257 ----------RLDSLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGP 323 (426)
Q Consensus 257 ----------~~~~~r~~i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~ 323 (426)
....+|++++||||+| .+|+.|++||+.++......+.++..+. ..++++.+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKL-----AKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc--CCChhHhcC
Confidence 2456788999999998 6888899999988632222233222111 12334443 454 45677
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHH-HhcCEEEEEeCC
Q 014366 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETV-MMAKRVFLLDNG 401 (426)
Q Consensus 324 ~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~-~~~D~i~vl~~G 401 (426)
.+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.|.++. +++|||+|||+++.+ ..||||++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 789999999999999999999999999999999999999999999998874 478999999999987 579999999999
Q ss_pred EEEEeccccccccCcchhh
Q 014366 402 KLEELNRSTLLGSNHDSLV 420 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~~~l~ 420 (426)
++++.|+++++..+.+.+.
T Consensus 253 ~i~~~g~~~~~~~~~~~~~ 271 (320)
T PRK13631 253 KILKTGTPYEIFTDQHIIN 271 (320)
T ss_pred EEEEeCCHHHHhcCHHHHH
Confidence 9999999988776654333
No 76
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.1e-51 Score=357.81 Aligned_cols=212 Identities=37% Similarity=0.535 Sum_probs=188.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
+.+++|.|+|+.. =-..+++|++||++||+||||||||||+++|+||..|.+|+|+++|+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~~----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHL----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCcc----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 5678999999753 2468899999999999999999999999999999999999999999999876654 456999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCC----CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFSG-TVAENIGYRDLM----TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||+..||.. ||.+|+.+|... ...+.++++.++..+|+..+.+++| .+||||||||+||||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHH
Confidence 9999999965 999999987531 2234577889999999999999999 59999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
+++-|||+||||+|+|||.-+.++...+.++.. +.|++||||+++.+. .+||++++++|+|.++|+.+++...+
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 999999999999999999999999999998863 579999999999886 79999999999999999987766543
No 77
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-51 Score=405.53 Aligned_cols=222 Identities=31% Similarity=0.478 Sum_probs=191.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++
T Consensus 6 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDIC 81 (351)
T ss_pred EEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 5999999999975 358999999999999999999999999999999999999999999999999987654 357899
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
||||++.+|+. |++||+.|+......+ .+++.++++..++.++.++ .+.+||||||||++||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r-----------~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDR-----------YVDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHH
Confidence 99999999965 9999999864322222 2345566666676665554 447999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccccCcch
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
|+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++++ ..||||++|++|++++.|+++++++++..
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~ 230 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPAS 230 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 9999999999999999999999999999998853 68999999999987 57999999999999999999988877655
Q ss_pred hhhcC
Q 014366 419 LVSAG 423 (426)
Q Consensus 419 l~~~~ 423 (426)
.+.+.
T Consensus 231 ~~~a~ 235 (351)
T PRK11432 231 RFMAS 235 (351)
T ss_pred hHHHH
Confidence 44433
No 78
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-50 Score=392.41 Aligned_cols=222 Identities=30% Similarity=0.492 Sum_probs=191.0
Q ss_pred cEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 187 DVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
.|+++||+++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743 23599999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEecCCC--CCcccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDIT--LFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~~--lf~~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
+|+||++. ++..|++||+.++......+ .+++.++++.+++.++.+.. +.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKERE-----------PARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 99999984 45679999998763222222 23456677777777666554 479999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCcc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
|||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||||++|++|++++.|+++++..+..
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~ 232 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGN 232 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcChH
Confidence 999999999999999999999999999999998853 789999999999888899999999999999999887766543
Q ss_pred hh
Q 014366 418 SL 419 (426)
Q Consensus 418 ~l 419 (426)
.+
T Consensus 233 ~~ 234 (279)
T PRK13650 233 DL 234 (279)
T ss_pred HH
Confidence 33
No 79
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-51 Score=385.24 Aligned_cols=215 Identities=31% Similarity=0.481 Sum_probs=181.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH---HHHhcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL---DSLRRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~---~~~r~~ 264 (426)
|+++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 478999999975 359999999999999999999999999999999999999999999999999877654 456788
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCC-CCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLM-TKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
++|+||++.+|+. |++||+.++... ...+. +++.++++.+++.++ ......+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGA-----------EDLYPAELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHH
Confidence 9999999999875 999999875221 11222 223444555544443 344557999999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999999998753 689999999999886 6999999999999999998876544
No 80
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.6e-50 Score=380.67 Aligned_cols=213 Identities=38% Similarity=0.556 Sum_probs=181.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC-----CCCccEEEEcCEeCCCCC--HHH
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY-----DPLSGCILVDDHDVQNIR--LDS 260 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~-----~p~~G~I~~~g~~i~~~~--~~~ 260 (426)
|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 5789999999753 5999999999999999999999999999999999999 999999999999987665 456
Q ss_pred HhcceEEEecCCCCCcccHHHHHcCCCCCCCC-----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
++++++|+||++.+|+.|++||+.++...... ..+++.++++..++.+...+.++ +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 77889999999998877999999875321111 12345556666666555443210 47999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999999999999999999999999999999999865589999999999875 799999999999999998765
No 81
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1e-50 Score=404.57 Aligned_cols=220 Identities=30% Similarity=0.445 Sum_probs=188.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.++. ++.++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 5899999999975 3589999999999999999999999999999999999999999999999999876543 67899
Q ss_pred EEecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
||||++.+|+ .|++||+.|+......+ .+++.++++..++.++. ...+.+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSE-----------RKYPGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchh-----------hCChhhCCHHHHHHHHHHHH
Confidence 9999999996 59999999864322222 23344555555554444 44568999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcch
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
|+.+|+++|||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++++. .||||++|++|++++.|+++++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPAT 228 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999998753 689999999999874 7999999999999999999988877654
Q ss_pred hhh
Q 014366 419 LVS 421 (426)
Q Consensus 419 l~~ 421 (426)
.+.
T Consensus 229 ~~~ 231 (353)
T TIGR03265 229 PFV 231 (353)
T ss_pred HHH
Confidence 443
No 82
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-50 Score=390.87 Aligned_cols=226 Identities=29% Similarity=0.416 Sum_probs=186.9
Q ss_pred EEEEeEEEEeCCCC---CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC----CCHHH
Q 014366 188 VKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN----IRLDS 260 (426)
Q Consensus 188 i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~----~~~~~ 260 (426)
|+++||+|+|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ....+
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 259999999999999999999999999999999999999999999999999853 23456
Q ss_pred HhcceEEEecCC--CCCcccHHHHHcCCCCCCCCCHH----HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 261 LRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 261 ~r~~i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
+|+.++||+|+| .+|+.|+.||+.++......+.+ ++.++++.+++.+ ...+..+.+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----------~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD----------EFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhccCCcccCCHHHHH
Confidence 788999999998 68888999999876422122222 2344444444421 1234566899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++. ++.|||++||+++.+. .||||++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999875 4789999999999885 7999999999999999999887
Q ss_pred ccCcchhhhcC
Q 014366 413 GSNHDSLVSAG 423 (426)
Q Consensus 413 ~~~~~~l~~~~ 423 (426)
..+.+.+...|
T Consensus 232 ~~~~~~~~~~~ 242 (288)
T PRK13643 232 FQEVDFLKAHE 242 (288)
T ss_pred HcCHHHHHHcC
Confidence 76544344333
No 83
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=3.9e-50 Score=402.58 Aligned_cols=222 Identities=33% Similarity=0.509 Sum_probs=192.0
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++|++++|++ .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.+
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 35999999999975 3589999999999999999999999999999999999999999999999999876543 5689
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
+||||++.+|+. ||+||+.|+......+ .+++.++++..++.++.++.| .+|||||||||+|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 9999999864322222 234566677777777666655 699999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
||+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++++. .||||++|++|++++.|+++++++++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998753 689999999999874 799999999999999999998887765
Q ss_pred hhhhc
Q 014366 418 SLVSA 422 (426)
Q Consensus 418 ~l~~~ 422 (426)
..+.+
T Consensus 238 ~~~~a 242 (375)
T PRK09452 238 NLFVA 242 (375)
T ss_pred cHHHH
Confidence 54433
No 84
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.2e-50 Score=376.96 Aligned_cols=205 Identities=35% Similarity=0.509 Sum_probs=174.6
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHhcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLRRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r~~ 264 (426)
|+++|++++|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999975333599999999999999999999999999999999999999999999999998765433 36788
Q ss_pred eEEEecCCCCCc-ccHHHHHcCCCCCCCC----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 265 VGLVSQDITLFS-GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eni~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
++|+||++.+|+ .|++||+.++...... ..+++.++++..++.++.++ ...+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHA-----------LPMQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHHH
Confidence 999999999886 5999999864211111 13445666676666655544 3469999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEE
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i 403 (426)
|||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+. .||++++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999875 4689999999999886 6999999999975
No 85
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-50 Score=388.84 Aligned_cols=220 Identities=32% Similarity=0.507 Sum_probs=184.3
Q ss_pred EEEEeEEEEeCCCC---CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC--HHHHh
Q 014366 188 VKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR--LDSLR 262 (426)
Q Consensus 188 i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~--~~~~r 262 (426)
|+++||+|+|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997531 36999999999999999999999999999999999999999999999999987643 34678
Q ss_pred cceEEEecCC--CCCcccHHHHHcCCCCCCCCCHH----HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 263 RHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 263 ~~i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
++++||||++ .+|+.|++||+.++....+.+.+ ++.++++.+++. +.+..+..+.+||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 8999999998 46788999999875322222332 233444444442 01344566789999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+|||||+.+|++|||||||++||+.++..+.+.|+++.+ +.|||++||+++.+. .||||++|++|++++.|+++++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998853 689999999999885 79999999999999999988776
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
++.
T Consensus 234 ~~~ 236 (287)
T PRK13637 234 KEV 236 (287)
T ss_pred hCH
Confidence 543
No 86
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.3e-50 Score=402.72 Aligned_cols=220 Identities=30% Similarity=0.450 Sum_probs=188.4
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCc--cEEEEcCEeCCCCCHHHHh
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS--GCILVDDHDVQNIRLDSLR 262 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~--G~I~~~g~~i~~~~~~~~r 262 (426)
.+.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.+.+. .+
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 357999999999975 359999999999999999999999999999999999999999 999999999976554 35
Q ss_pred cceEEEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 263 RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
+.++||||++.+|+. ||+||+.|+......+. +++.++++..++.++.++ .+.+|||||||||+
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-----------~~~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAH-----------LPAQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhC-----------ChhhCCHHHHHHHH
Confidence 689999999999965 99999987642222222 334555565555555544 45799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC---CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG---HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|||||+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++++. .||||++|++|++++.|+++++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999998753 579999999999875 79999999999999999999888
Q ss_pred cCcchh
Q 014366 414 SNHDSL 419 (426)
Q Consensus 414 ~~~~~l 419 (426)
+++...
T Consensus 228 ~~p~~~ 233 (362)
T TIGR03258 228 DAPADG 233 (362)
T ss_pred hCcCcH
Confidence 776443
No 87
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=8.3e-50 Score=375.63 Aligned_cols=218 Identities=44% Similarity=0.694 Sum_probs=194.3
Q ss_pred CCccEEEEeEEEEeCCCC-CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh
Q 014366 184 INGDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262 (426)
Q Consensus 184 ~~~~i~~~~v~~~y~~~~-~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r 262 (426)
..+.|+++|++++|++.. .++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 346799999999997532 3699999999999999999999999999999999999999999999999988776666777
Q ss_pred cceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+.++|++|++.+|+.|++||+.++... ....++.+..+...+.++++.+|.|+++.+++++.+||||||||++||||+
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral 165 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQS--CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARAL 165 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 889999999999989999999875432 223344455566678899999999999999999999999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEE
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKL 403 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i 403 (426)
+++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||+|++|++|++
T Consensus 166 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 166 IRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999998767899999999999988999999999974
No 88
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=5.5e-50 Score=375.23 Aligned_cols=213 Identities=26% Similarity=0.420 Sum_probs=180.1
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++||+++|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 578999999975324699999999999999999999999999999999999999999999999998654 3566788999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
++|++.+|+ .|++||+.+.......+ .+++.++++..++.+.. +....+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHHHHHHHH
Confidence 999999884 69999997642111111 13344555555555443 334579999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999999999999999876789999999999985 6999999999999999987654
No 89
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-50 Score=379.89 Aligned_cols=217 Identities=35% Similarity=0.543 Sum_probs=186.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++++|++|+|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999975 35999999999999999999999999999999999999999999999999988777777788999
Q ss_pred EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchH-HHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
|+||++.+|+.|++||+.++........+++.+.++..++. ++ ....+.+||||||||++||||++++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY-----------ATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH-----------hhCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999988999999875322222233445555555553 22 2345679999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++..++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 223 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNP 223 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCC
Confidence 999999999999999999999999998753 689999999999886 79999999999999999988776543
No 90
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=4.8e-50 Score=399.76 Aligned_cols=218 Identities=30% Similarity=0.473 Sum_probs=186.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 4889999999975 359999999999999999999999999999999999999999999999999976543 356899
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCC----CCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLM----TKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~----~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
||||++.+|+. |++||+.++... ...+ .+++.++++..++.++.++ .+.+||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----------YPAQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 99999999975 999999986421 1112 2344556666666555544 45799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|++++.|+++++++
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998853 689999999999875 799999999999999999998877
Q ss_pred Ccchh
Q 014366 415 NHDSL 419 (426)
Q Consensus 415 ~~~~l 419 (426)
++...
T Consensus 227 ~p~~~ 231 (353)
T PRK10851 227 EPATR 231 (353)
T ss_pred Cccch
Confidence 65443
No 91
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-49 Score=385.76 Aligned_cols=219 Identities=34% Similarity=0.498 Sum_probs=189.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++++||+++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999754346999999999999999999999999999999999999999999999999998777777788899
Q ss_pred EEecCCC--CCcccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 267 LVSQDIT--LFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 267 ~v~Q~~~--lf~~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
|+||++. ++..|++||+.++......+ .+++.++++.+++.++++..| .+||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 9999983 55679999998753221122 234566677777776666544 699999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|||++||+++.+..||++++|++|++++.|+++++..+.
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCH
Confidence 99999999999999999999999999999998863 68999999999998889999999999999999987766543
No 92
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-50 Score=398.89 Aligned_cols=217 Identities=34% Similarity=0.470 Sum_probs=183.6
Q ss_pred EEEEeEEEEeCC--CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---Hh
Q 014366 188 VKFCNISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---LR 262 (426)
Q Consensus 188 i~~~~v~~~y~~--~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~r 262 (426)
|+++||+|+|++ ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 2246999999999999999999999999999999999999999999999999998776543 47
Q ss_pred cceEEEecCCCCCc-ccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 263 RHVGLVSQDITLFS-GTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
++++|+||++.+|+ .|++||+.++......+. +++.+.++..++.++ ....+.+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDK-----------ADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHH
Confidence 88999999999986 599999987532112222 233444555444443 44456799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 689999999999986 699999999999999999887765
Q ss_pred C
Q 014366 415 N 415 (426)
Q Consensus 415 ~ 415 (426)
+
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 4
No 93
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-49 Score=385.46 Aligned_cols=215 Identities=33% Similarity=0.481 Sum_probs=186.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++|+|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++++.++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999743 35999999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEecCC--CCCcccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 267 LVSQDI--TLFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 267 ~v~Q~~--~lf~~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
|+||++ .++..|++||+.++......+ .+++.++++.+++.++.++.| .+||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999998 467789999998753211122 234556677777766655544 699999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
||+.+|++|||||||++||+.++..+.+.|+++. ++.|+|++||+++.+ +.||||++|++|++++.|+++++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999999885 468999999999988 479999999999999999986543
No 94
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-49 Score=390.04 Aligned_cols=224 Identities=28% Similarity=0.409 Sum_probs=185.2
Q ss_pred cEEEEeEEEEeCCCC---CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC--------
Q 014366 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN-------- 255 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~-------- 255 (426)
.|+++||+|+|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999997532 259999999999999999999999999999999999999999999999877531
Q ss_pred ----------------CCHHHHhcceEEEecCC--CCCcccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhc
Q 014366 256 ----------------IRLDSLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTL 313 (426)
Q Consensus 256 ----------------~~~~~~r~~i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~l 313 (426)
.+...+++.+|||||+| .+|..|++||+.++......+. +++.++++.+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----- 156 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE----- 156 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-----
Confidence 12356788999999986 5777899999987642222232 23444555555431
Q ss_pred CCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHH-Hh
Q 014366 314 PQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETV-MM 391 (426)
Q Consensus 314 p~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~-~~ 391 (426)
...+..+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. .+.|||+|||+++.+ ..
T Consensus 157 -----~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 157 -----SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -----hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 23345668999999999999999999999999999999999999999999999875 478999999999987 57
Q ss_pred cCEEEEEeCCEEEEeccccccccCcchhh
Q 014366 392 AKRVFLLDNGKLEELNRSTLLGSNHDSLV 420 (426)
Q Consensus 392 ~D~i~vl~~G~i~e~g~~~~l~~~~~~l~ 420 (426)
||||++|++|++++.|+++++.++.+.+.
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~~~~~~ 260 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSDNKFLI 260 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcCHHHHH
Confidence 99999999999999999988877654433
No 95
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-49 Score=387.69 Aligned_cols=220 Identities=27% Similarity=0.408 Sum_probs=183.6
Q ss_pred EEEEeEEEEeCCCC---CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC----CCHHH
Q 014366 188 VKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN----IRLDS 260 (426)
Q Consensus 188 i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~----~~~~~ 260 (426)
++++|++|+|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997421 359999999999999999999999999999999999999999999999999853 23456
Q ss_pred HhcceEEEecCC--CCCcccHHHHHcCCCCCCCCCHH----HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 261 LRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 261 ~r~~i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
+++.++||||+| .+|+.|++||+.++......+.+ ++.++++.+++.+ ...+.++.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE----------ELLARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCh----------hhhhCCcccCCHHHHH
Confidence 778899999997 57788999999875322222222 3344455555431 2234466899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
|++|||||+.+|++|||||||++||+.++..+.+.|+++.+ +.|||++||+++.+. .||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998853 689999999999885 799999999999999999887
Q ss_pred cccCcc
Q 014366 412 LGSNHD 417 (426)
Q Consensus 412 l~~~~~ 417 (426)
+.++..
T Consensus 233 ~~~~~~ 238 (290)
T PRK13634 233 IFADPD 238 (290)
T ss_pred HhcCHH
Confidence 765543
No 96
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-49 Score=386.66 Aligned_cols=224 Identities=26% Similarity=0.468 Sum_probs=184.6
Q ss_pred cEEEEeEEEEeCCCC---CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----CHH
Q 014366 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~----~~~ 259 (426)
.++++||+|+|+++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997432 3599999999999999999999999999999999999999999999999998653 235
Q ss_pred HHhcceEEEecCC--CCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHHHHH
Q 014366 260 SLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 260 ~~r~~i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqkQRl 336 (426)
.+|+.|+||||+| .+|+.|++||+.++......+.++..+. +.+.++.+ |++ ...+..+.+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 6788999999997 5788899999987532212232222211 12233332 554 234556789999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+|||||+.+|++|||||||++||+.++..+.+.|+++. .+.|||++||+++.+. .||||++|++|++++.|+++++.
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999874 3689999999999885 79999999999999999988776
Q ss_pred cCcc
Q 014366 414 SNHD 417 (426)
Q Consensus 414 ~~~~ 417 (426)
++..
T Consensus 235 ~~~~ 238 (286)
T PRK13646 235 KDKK 238 (286)
T ss_pred hCHH
Confidence 6543
No 97
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=8.1e-50 Score=378.03 Aligned_cols=219 Identities=29% Similarity=0.458 Sum_probs=183.6
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcceE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHVG 266 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i~ 266 (426)
|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 468999999975 359999999999999999999999999999999999999999999999999987766554 56799
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCC----------CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKI----------DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
|+||++.+|+. |++||+.++...... ..++. ...+.++++.+ |++...+....+||||||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qr 151 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREA-----RERAEELLERV--GLADLADRPAGELSYGQQRR 151 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHH-----HHHHHHHHHHc--CccchhhCChhhCCHHHHHH
Confidence 99999999876 999999875321110 01111 11223444444 55666667788999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
++||||++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 999999999999999999999999999999999999875 5789999999999985 69999999999999999887765
Q ss_pred cC
Q 014366 414 SN 415 (426)
Q Consensus 414 ~~ 415 (426)
++
T Consensus 232 ~~ 233 (236)
T cd03219 232 NN 233 (236)
T ss_pred cC
Confidence 44
No 98
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-49 Score=378.23 Aligned_cols=214 Identities=34% Similarity=0.527 Sum_probs=180.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 3789999999975 359999999999999999999999999999999999999999999999999865543 256799
Q ss_pred EEecCCCCCc-ccHHHHHcCCCCCCCC----C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 267 LVSQDITLFS-GTVAENIGYRDLMTKI----D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 267 ~v~Q~~~lf~-~ti~eni~~~~~~~~~----~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
|++|++.+|+ .|++||+.++...... + .+++.++++..++.++. ...+.+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-----------DRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHH
Confidence 9999999886 5999999875321111 1 12334455555554444 3455799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 689999999999875 799999999999999999887765
Q ss_pred C
Q 014366 415 N 415 (426)
Q Consensus 415 ~ 415 (426)
+
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 4
No 99
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=7.8e-50 Score=370.37 Aligned_cols=201 Identities=37% Similarity=0.528 Sum_probs=172.7
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEE
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v 268 (426)
+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 368999999752 359999999999999999999999999999999999999999999999998753 4567789999
Q ss_pred ecCCC--CCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 269 SQDIT--LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 269 ~Q~~~--lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
||++. +|+.|++||+.++........+++.++++.+++.++.++. ..+||||||||++|||||+.+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERH-----------PLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCC-----------chhCCHHHHHHHHHHHHHHhCC
Confidence 99983 5678999999875432222234566777777776655443 4699999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEE
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLE 404 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~ 404 (426)
+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999874 5689999999999986 69999999999974
No 100
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-50 Score=400.30 Aligned_cols=219 Identities=31% Similarity=0.502 Sum_probs=186.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEE
Confidence 4899999999975 359999999999999999999999999999999999999999999999999976654 356799
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
||||++.+|+. |++||+.++......+ .+++.++++..++.++.++ ...+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~-----------~~~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDR-----------KPKALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcC-----------ChhhCCHHHHHHHHHHHH
Confidence 99999999965 9999998764221222 2345556666666555444 457999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcch
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
|+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++..++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999998743 689999999999875 7999999999999999999888766544
Q ss_pred hh
Q 014366 419 LV 420 (426)
Q Consensus 419 l~ 420 (426)
.+
T Consensus 228 ~~ 229 (369)
T PRK11000 228 RF 229 (369)
T ss_pred HH
Confidence 33
No 101
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=8e-50 Score=373.64 Aligned_cols=205 Identities=35% Similarity=0.502 Sum_probs=172.0
Q ss_pred EEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH----H
Q 014366 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS----L 261 (426)
Q Consensus 188 i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~----~ 261 (426)
|+++||+++|++.. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999997521 36999999999999999999999999999999999999999999999999987765322 3
Q ss_pred hcceEEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
++.++|+||++.+|+. |++||+.++......+ .+++.++++..++. ...+..+.+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG-----------DRLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhcChhhcCHHHHHHH
Confidence 5679999999999875 9999998753222111 12334444444444 344445679999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCCEE
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNGKL 403 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G~i 403 (426)
+|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998854 6899999999998889999999999974
No 102
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.5e-50 Score=372.57 Aligned_cols=205 Identities=36% Similarity=0.548 Sum_probs=173.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 468999999975 36999999999999999999999999999999999999999999999999987644 24678999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||++.+|+ .|++||+.++......+ .+++.++++..++.++.+ ....+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHHH
Confidence 999999886 59999998643211111 223445555555555444 34579999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
+.+|++|||||||++||+.+++.+.+.|+++. .++|||++||+++.+. .||++++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999874 3689999999999875 79999999999998765
No 103
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-49 Score=378.44 Aligned_cols=214 Identities=34% Similarity=0.484 Sum_probs=180.8
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC---HHHHhcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDSLRRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~---~~~~r~~ 264 (426)
++++||+++|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4689999999752 35999999999999999999999999999999999999999999999999987765 3456788
Q ss_pred eEEEecCCCCCc-ccHHHHHcCCCCCC------------CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 265 VGLVSQDITLFS-GTVAENIGYRDLMT------------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eni~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
++|+||++.+|+ .|++||+.++.... ....+++.++++..++ ....+..+.+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL-----------LDKAYQRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCC-----------hhhhCCCcccCCHH
Confidence 999999999886 59999997643210 0112233344444444 33445567899999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~ 408 (426)
||||++||||++.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999874 3689999999999987 799999999999999998
Q ss_pred ccccc
Q 014366 409 STLLG 413 (426)
Q Consensus 409 ~~~l~ 413 (426)
++++.
T Consensus 229 ~~~~~ 233 (241)
T cd03256 229 PAELT 233 (241)
T ss_pred HHHhh
Confidence 87764
No 104
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-49 Score=382.34 Aligned_cols=219 Identities=29% Similarity=0.511 Sum_probs=186.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++++|++++|+++.+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 58999999999743356999999999999999999999999999999999999999999999999998766677888999
Q ss_pred EEecCCC--CCcccHHHHHcCCCCCCCCCHH----HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 267 LVSQDIT--LFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 267 ~v~Q~~~--lf~~ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
|+||++. ++..|++||+.++......+.+ .+.++++..++.++.++ .+.+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDK-----------EPQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------CcccCCHHHHHHHHHHH
Confidence 9999984 4467999999875321112222 24455666666655544 45799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.|+++++..++
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999999998753 48999999999988889999999999999999887766554
No 105
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-49 Score=375.41 Aligned_cols=217 Identities=32% Similarity=0.453 Sum_probs=182.3
Q ss_pred EEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHh
Q 014366 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLR 262 (426)
Q Consensus 188 i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r 262 (426)
|+++|++++|++.. .++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997531 2699999999999999999999999999999999999999999999999998766543 346
Q ss_pred cceEEEecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 263 RHVGLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
+.++|+||++.+|+ .|++||+.++......+ .+++.++++..++.+..+ ....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-----------AYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------cChhhCCHHHHHHHH
Confidence 78999999999997 59999997642111111 223445555555554443 455799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
||||++.+|+++||||||++||+.+++.+.+.|+++. + ++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999874 3 689999999999985 699999999999999998776654
Q ss_pred C
Q 014366 415 N 415 (426)
Q Consensus 415 ~ 415 (426)
+
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 3
No 106
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-49 Score=397.52 Aligned_cols=221 Identities=29% Similarity=0.454 Sum_probs=188.2
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.++ .++.+
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999975 359999999999999999999999999999999999999999999999999977653 46789
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
|||||++.+|+. |++||+.|+....+.+. +++.++++..++.++.++ .+.+||||||||++|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-----------~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKR-----------KPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHH
Confidence 999999999975 99999998643222222 334455555555555444 45799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccccCcc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
||+.+|++||||||||+||+.+++.+.+.|+++. .+.|+|++||+++++ ..|||+++|++|++++.|++++++.++.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 9999999999999999999999999999888764 268999999999987 5799999999999999999998887765
Q ss_pred hhhh
Q 014366 418 SLVS 421 (426)
Q Consensus 418 ~l~~ 421 (426)
..+.
T Consensus 243 ~~~~ 246 (377)
T PRK11607 243 TRYS 246 (377)
T ss_pred cHHH
Confidence 4433
No 107
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=6.6e-50 Score=398.64 Aligned_cols=208 Identities=27% Similarity=0.439 Sum_probs=180.0
Q ss_pred EeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH----hcceEEEecC
Q 014366 196 KYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL----RRHVGLVSQD 271 (426)
Q Consensus 196 ~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~----r~~i~~v~Q~ 271 (426)
+|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+..++ |+.++||||+
T Consensus 2 ~~~~--~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 2 KTGG--KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred ccCC--ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 4543 359999999999999999999999999999999999999999999999999998888776 7789999999
Q ss_pred CCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 272 ITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 272 ~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
+.+|+. ||+||+.++....+.+ .+++.++++.+++.++.++ .+.+||||||||++|||||+.+|
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~-----------~p~~LSGGq~QRV~lARAL~~~p 148 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHR-----------YPDELSGGMQQRVGLARALAAEP 148 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhC-----------ChhhCCHHHHHHHHHHHHHhcCC
Confidence 999975 9999998754322222 2345566666666655554 45799999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccccCc
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
++||||||||+||+.+++.+++.+.++. .++|+|+|||+++.+ +.||||++|++|++++.|+++++.+++
T Consensus 149 ~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 149 DILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 9999999999999999999999999874 268999999999986 579999999999999999998877654
No 108
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.6e-49 Score=368.99 Aligned_cols=205 Identities=30% Similarity=0.439 Sum_probs=178.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 478999999965 3699999999999999999999999999999999999999999999999987654 456778999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
+||++.+|+ .|++||+.++......+.+++.++++..++.+..++ .+.+||||||||++||||++.+|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998885 699999976432112245567777788887766554 34799999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999875 4689999999999885 79999999999998765
No 109
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-49 Score=384.11 Aligned_cols=219 Identities=28% Similarity=0.448 Sum_probs=185.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC--CCCHHHHhcc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ--NIRLDSLRRH 264 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~--~~~~~~~r~~ 264 (426)
.|+++|++++|+++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+++.
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 58999999999633 36999999999999999999999999999999999999999999999999984 2334567889
Q ss_pred eEEEecCC--CCCcccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 265 VGLVSQDI--TLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 265 i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
++|+||++ .+|+.|++||+.++......+. +++..+++..++.++. +..+.+||||||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHHH
Confidence 99999998 4678899999987432111222 3345556666665544 34568999999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|||++||+++.+. .|||+++|++|++++.|+++++.+.
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998853 789999999999986 7999999999999999998877665
Q ss_pred cc
Q 014366 416 HD 417 (426)
Q Consensus 416 ~~ 417 (426)
..
T Consensus 233 ~~ 234 (283)
T PRK13636 233 KE 234 (283)
T ss_pred HH
Confidence 43
No 110
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.8e-49 Score=364.60 Aligned_cols=203 Identities=35% Similarity=0.616 Sum_probs=179.3
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
+.++++|++++|++...++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++++.+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46999999999975434699999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 266 ~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
+|+||++.+|++|++||+.+... .+.+++.++++ +++++.+|||||+||++||||++.+
T Consensus 85 ~~v~q~~~~~~~tv~~~l~~~~~---~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 85 TIIPQDPTLFSGTIRSNLDPFDE---YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred EEEecCCcccCccHHHHhcccCC---CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999976432 23333333222 2346789999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccc
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~ 409 (426)
|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999998767899999999999878999999999999988754
No 111
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.1e-49 Score=376.76 Aligned_cols=214 Identities=34% Similarity=0.478 Sum_probs=180.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH---HHHhcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL---DSLRRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~---~~~r~~ 264 (426)
|+++||+++|+.+ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 6899999999722 469999999999999999999999999999999999999999999999999876553 345778
Q ss_pred eEEEecCCCCCc-ccHHHHHcCCCCCC------------CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 265 VGLVSQDITLFS-GTVAENIGYRDLMT------------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eni~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
++|+||++.+|+ .|++||+.++.... ....+++.++++..++.+ ..+..+.+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-----------KAYQRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCHH
Confidence 999999999886 59999997653210 011223344444444443 344466899999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~ 408 (426)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. + ++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999999874 2 689999999999985 799999999999999999
Q ss_pred ccccc
Q 014366 409 STLLG 413 (426)
Q Consensus 409 ~~~l~ 413 (426)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 88763
No 112
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-49 Score=372.60 Aligned_cols=211 Identities=30% Similarity=0.422 Sum_probs=177.4
Q ss_pred cEEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---H
Q 014366 187 DVKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---L 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~ 261 (426)
.++++||+|+|+++. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997532 36999999999999999999999999999999999999999999999999998776543 3
Q ss_pred h-cceEEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 262 R-RHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 262 r-~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
+ +.++|+||++.+|+. |++||+.++......+ .+++.++++..++ +...+..+.+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGL-----------EHRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------chhhhCChhhCCHHHHHH
Confidence 3 679999999998865 9999997632111111 1233444454444 444445568999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHHhcCEEEEEeCCEEEEecc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~ 408 (426)
++||||++.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+..+|++++|++|++++.++
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999874 3689999999999998889999999999998775
No 113
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-49 Score=382.74 Aligned_cols=219 Identities=30% Similarity=0.431 Sum_probs=188.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---cEEEEcCEeCCCCCHHHHhc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS---GCILVDDHDVQNIRLDSLRR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~---G~I~~~g~~i~~~~~~~~r~ 263 (426)
.|+++|++|+|++...++++++||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...+++
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 589999999997533469999999999999999999999999999999999999998 89999999998766667788
Q ss_pred ceEEEecCCC--CCcccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 264 HVGLVSQDIT--LFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 264 ~i~~v~Q~~~--lf~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
+++|+||++. +++.|++||+.++......+. +++.++++.+++.++.++. ..+||||||||++
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LS~G~~qrv~ 153 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE-----------PANLSGGQKQRVA 153 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHHHH
Confidence 9999999984 457799999987532222232 3355566667776655554 4799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||++||+++.+..|||+++|++|++++.|+++++..+
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999998753 6899999999999888999999999999999998876654
Q ss_pred c
Q 014366 416 H 416 (426)
Q Consensus 416 ~ 416 (426)
.
T Consensus 234 ~ 234 (282)
T PRK13640 234 V 234 (282)
T ss_pred H
Confidence 3
No 114
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.1e-49 Score=388.82 Aligned_cols=215 Identities=30% Similarity=0.447 Sum_probs=182.2
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+++
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 36999999999975 35999999999999999999999999999999999999999999999999987644 4568889
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
||+||++.+|+ .|++||+.+.......+. +++.++++.+++.+. ......+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENK-----------ADAKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchH-----------hcCchhhCCHHHHHHHHHHH
Confidence 99999999986 599999975322222222 223344444444333 33455799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
||+.+|++|+|||||+|||+.+++.+.+.|+++. +++|||++||+++.+. .||||++|++|++++.|+++++.+
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999985 4689999999999986 699999999999999999887754
No 115
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2.1e-49 Score=377.95 Aligned_cols=219 Identities=33% Similarity=0.492 Sum_probs=184.3
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----ccEEEEcCEeCCCC--CHHH
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCILVDDHDVQNI--RLDS 260 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~-----~G~I~~~g~~i~~~--~~~~ 260 (426)
|+++||+++|++. .+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++... +...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999753 5999999999999999999999999999999999999998 99999999998753 3455
Q ss_pred HhcceEEEecCCCCCcccHHHHHcCCCCCCC-CC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
+++.++|+||++.+|+.|++||+.++..... .+ .+++.++++..++.+++. ..++..+.+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHHH
Confidence 6788999999999988999999986422111 11 233445555555542211 23345668999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999999866689999999999885 799999999999999999887765
Q ss_pred C
Q 014366 415 N 415 (426)
Q Consensus 415 ~ 415 (426)
+
T Consensus 233 ~ 233 (247)
T TIGR00972 233 N 233 (247)
T ss_pred C
Confidence 4
No 116
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-49 Score=370.13 Aligned_cols=211 Identities=31% Similarity=0.448 Sum_probs=179.8
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 578999999975 3599999999999999999999999999999999999999999999999988653 3566788999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCCC----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||++.+++. |++||+.++...... ..+++.++++..++.++.+. ...+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR-----------LVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 9999998875 999999764211111 12345666677776665544 3479999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
+.+|+++||||||++||+.+.+.+.+.|+++. + ++|+|++||+++.+. .|||+++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999999875 3 689999999999886 6999999999999999877653
No 117
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-49 Score=377.05 Aligned_cols=220 Identities=30% Similarity=0.431 Sum_probs=188.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEEcCEeCCCCCHHHHhc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD---PLSGCILVDDHDVQNIRLDSLRR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~I~~~g~~i~~~~~~~~r~ 263 (426)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999975 369999999999999999999999999999999999984 69999999999998777777788
Q ss_pred ceEEEecCCCCCcccHHHHHcCCCCCCC------CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 264 HVGLVSQDITLFSGTVAENIGYRDLMTK------IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~ti~eni~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
.++|+||++.+|+.|++||+.++..... ...+++.++++.+++.+++.. ...+++.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHHH
Confidence 9999999999998999999987532111 112234556666666443322 234567899999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||||++++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.++
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999999866889999999999885 7999999999999999998877654
No 118
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3.5e-49 Score=370.25 Aligned_cols=214 Identities=28% Similarity=0.425 Sum_probs=178.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcceE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHVG 266 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i~ 266 (426)
|+++||+++|++. ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCCe--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 5789999999753 59999999999999999999999999999999999999999999999999887766544 56799
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCC--CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKI--DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
|+||++.+|+. |++||+.++...... ..+++.++++.. + +++...+..+.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~---------~-~l~~~~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF---------P-RLKERRKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH---------H-hhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence 99999999876 999999875432110 111222222222 1 1233345567899999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999999999875 4689999999999875 79999999999999998876654
No 119
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.9e-49 Score=397.72 Aligned_cols=217 Identities=30% Similarity=0.477 Sum_probs=191.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+++..+++++++
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999975 36999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEecCCCC-CcccHHHHHcCCCCC-----C---CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 267 LVSQDITL-FSGTVAENIGYRDLM-----T---KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 267 ~v~Q~~~l-f~~ti~eni~~~~~~-----~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
||+|++.+ |+.|++||+.++... . ..+.++++++++.+++.++.++ ...+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHH
Confidence 99999987 467999999876421 1 1123456677777777666544 45799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
|||||+++|++|||||||++||+.++.++++.|+++. ++.|+|++||+++.+. .|||+++|++|++++.|+++++.+.
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999999985 4689999999999985 7999999999999999999876654
Q ss_pred c
Q 014366 416 H 416 (426)
Q Consensus 416 ~ 416 (426)
+
T Consensus 230 ~ 230 (402)
T PRK09536 230 D 230 (402)
T ss_pred H
Confidence 3
No 120
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-49 Score=376.32 Aligned_cols=218 Identities=32% Similarity=0.520 Sum_probs=182.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
++++||+++|++. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999752 359999999999999999999999999999999999999999999999999887777777889999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||++.+|+ .|++||+.++......+ .+++.++++..++.+ ....++.+.+||||||||++||||+
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~laral 150 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARAL 150 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHHH
Confidence 999999986 59999997643211112 122333444444332 0134556789999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+++|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++.+.++
T Consensus 151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 151 AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999998753 689999999999875 7999999999999999988766543
No 121
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-49 Score=377.30 Aligned_cols=222 Identities=32% Similarity=0.472 Sum_probs=186.2
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~--~~~ 258 (426)
..|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 5 ~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 5 PKMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred cEEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 35999999999975 359999999999999999999999999999999999974 689999999999864 334
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
..+++.++|+||++.+|+.|++||+.++...... ..+++.++++.+++.+++. +.++..+.+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHH
Confidence 5677889999999999988999999864211111 1234455566666543322 234556789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|||++||+++.+. .||++++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999866789999999999885 7999999999999999998877
Q ss_pred ccCc
Q 014366 413 GSNH 416 (426)
Q Consensus 413 ~~~~ 416 (426)
.+++
T Consensus 236 ~~~~ 239 (253)
T PRK14242 236 FTRP 239 (253)
T ss_pred HcCC
Confidence 6553
No 122
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=4.3e-49 Score=368.71 Aligned_cols=208 Identities=29% Similarity=0.470 Sum_probs=176.5
Q ss_pred EEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 188 i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
|+++||+++|++.. .++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ....+++++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999997531 159999999999999999999999999999999999999999999999999875 345678899
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
+|+||++.+|+. |++||+.+.......+ .+++.++++..++.+..+ ..+.+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHHHHH
Confidence 999999999875 9999997632211111 234455566665555443 456799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
|++.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999875 4689999999999875 79999999999998764
No 123
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-49 Score=368.05 Aligned_cols=205 Identities=32% Similarity=0.529 Sum_probs=177.1
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++|+|++. ++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 i~~~~~~~~~~~~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECCE--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 5789999999753 5999999999999 99999999999999999999999999999999999987665 667889999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||++.+|+. |++||+.+.......+ .+++.++++..++.++.+. .+.+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-----------KIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-----------chhhCCHHHHHHHHHHHHH
Confidence 9999999875 9999997632111111 2345666777777665443 4478999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
+.+|+++||||||++||+.+++.+.+.|+++.++.|+|++||+++.+. .|||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999876789999999999985 79999999999998764
No 124
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-49 Score=375.71 Aligned_cols=221 Identities=31% Similarity=0.437 Sum_probs=185.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~--~~~~ 259 (426)
.|+++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 6999999999975 3599999999999999999999999999999999999997 48999999998753 2345
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCC-CC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+++.++|+||++.+|+.|++||+.++..... .+ .+.+.++++.+++.+.+. ...+.++.+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH-------HHHhCCcccCCHHHHH
Confidence 67888999999999988899999987532111 11 233455555555532221 1233467899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++|||||+.+|++|||||||++||+.++..+.+.|+++.++.|+|++||+++.+. .|||+++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999876789999999999875 79999999999999999998877
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
+++
T Consensus 238 ~~~ 240 (254)
T PRK14273 238 FNP 240 (254)
T ss_pred hCC
Confidence 654
No 125
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-49 Score=379.47 Aligned_cols=219 Identities=27% Similarity=0.429 Sum_probs=188.0
Q ss_pred cEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 187 DVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
.|+++||+++|++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 23599999999999999999999999999999999999999999999999999876667788899
Q ss_pred EEEecCCC--CCcccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDIT--LFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~~--lf~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
+|++|++. ++..|+.||+.++......+. +++..+++.+++.++.+. .+.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 99999984 557799999986532111222 234566666677665544 4579999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|||+++|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||+++.+..||+|++|++|++++.|+++++..+.
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 999999999999999999999999999999998853 68999999999998889999999999999999988776543
No 126
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=6.5e-49 Score=368.22 Aligned_cols=206 Identities=34% Similarity=0.477 Sum_probs=172.2
Q ss_pred EEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---Hh
Q 014366 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---LR 262 (426)
Q Consensus 188 i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~r 262 (426)
|+++||+++|++.. .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999997421 35999999999999999999999999999999999999999999999999987766543 33
Q ss_pred -cceEEEecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 263 -RHVGLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 263 -~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
+.++|+||++.+|+ .|++||+.++......+ .+++.++++..++. ......+.+||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-----------HRINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHHH
Confidence 67999999999885 59999997632111111 12333444444444 344445689999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHHhcCEEEEEeCCEEE
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDNGKLE 404 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~G~i~ 404 (426)
+||||++.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+..||++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999875 268999999999998889999999999975
No 127
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-48 Score=379.21 Aligned_cols=217 Identities=27% Similarity=0.447 Sum_probs=186.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++++|++++|++. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.++
T Consensus 3 ~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 37899999999643 35999999999999999999999999999999999999999999999999987766677888999
Q ss_pred EEecCCC--CCcccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 267 LVSQDIT--LFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 267 ~v~Q~~~--lf~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
|+||++. +|+.|++||+.++......+. +++.++++.+++.++.++ .+..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDR-----------VPHHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcC-----------CcccCCHHHHHHHHHHH
Confidence 9999984 677899999986432112222 234566666666665554 34799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||+++.+. .|||+++|++|++++.|+++++.+.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999998753 689999999999984 7999999999999999998877654
No 128
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-48 Score=377.98 Aligned_cols=216 Identities=31% Similarity=0.482 Sum_probs=183.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC-HHHHhcceE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR-LDSLRRHVG 266 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~-~~~~r~~i~ 266 (426)
++++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999643 35999999999999999999999999999999999999999999999999987654 356778899
Q ss_pred EEecCCC--CCcccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 267 LVSQDIT--LFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 267 ~v~Q~~~--lf~~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
|+||++. +++.|++||+.++......+ .+++.++++..++.++.+ ..+..||||||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-----------RSPKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CCcccCCHHHHHHHHHHH
Confidence 9999985 45679999998753211122 233445555555555443 455799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||+.+|+++||||||++||+.++..+.+.|+++. ++.|+|++||+++.+..|||+++|++|++++.|+++++...
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999999875 47899999999999988999999999999999998776554
No 129
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=6.2e-49 Score=371.05 Aligned_cols=219 Identities=28% Similarity=0.460 Sum_probs=181.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcceE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHVG 266 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i~ 266 (426)
|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 478999999975 359999999999999999999999999999999999999999999999999877665443 56799
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
|+||++.+|+. |++||+.++........++... .+.++++.+ |++...+..+.+||||||||++||||++.+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999876 9999998643211112111111 122333333 444455566789999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 223 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhcC
Confidence 99999999999999999999999999875 4689999999998775 7999999999999999988876544
No 130
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-48 Score=377.36 Aligned_cols=222 Identities=29% Similarity=0.462 Sum_probs=187.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...++++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 58999999999754345999999999999999999999999999999999999999999999999998777778888999
Q ss_pred EEecCCC-CC-cccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 267 LVSQDIT-LF-SGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 267 ~v~Q~~~-lf-~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
|+||++. +| ..|+++|+.++........ +++.++++..++.++. +..+.+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHHH
Confidence 9999985 44 5589999987532111122 2344455555554443 3456799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCcch
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
|++.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||||++|++|++++.|+++++.++...
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 235 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEE 235 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCHHH
Confidence 99999999999999999999999999999998753 6899999999998877999999999999999998877665433
Q ss_pred h
Q 014366 419 L 419 (426)
Q Consensus 419 l 419 (426)
+
T Consensus 236 ~ 236 (269)
T PRK13648 236 L 236 (269)
T ss_pred H
Confidence 3
No 131
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-48 Score=379.41 Aligned_cols=219 Identities=31% Similarity=0.452 Sum_probs=187.6
Q ss_pred cEEEEeEEEEeCCC----CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC-HHHH
Q 014366 187 DVKFCNISFKYADN----MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR-LDSL 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~----~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~-~~~~ 261 (426)
.++++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 58999999999742 246999999999999999999999999999999999999999999999999987543 3556
Q ss_pred hcceEEEecCCC--CCcccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 262 RRHVGLVSQDIT--LFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 262 r~~i~~v~Q~~~--lf~~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
++.++|+||++. +|..|+.||+.++......+ .+++.++++.+++.++.++. ..+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHA-----------PHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHH
Confidence 888999999984 56669999998753211112 23456667777777666554 47999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
++|||||+.+|+++||||||++||+.++..+.+.|+++. .+.|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999884 378999999999998789999999999999999988876
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13633 233 KEV 235 (280)
T ss_pred cCh
Confidence 554
No 132
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=5.3e-49 Score=389.22 Aligned_cols=220 Identities=27% Similarity=0.346 Sum_probs=182.9
Q ss_pred cEEEEeEEEEeCCC-----------CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC
Q 014366 187 DVKFCNISFKYADN-----------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255 (426)
Q Consensus 187 ~i~~~~v~~~y~~~-----------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~ 255 (426)
-|+++||+++|+.. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 58999999999631 2358999999999999999999999999999999999999999999999999988
Q ss_pred CCHHH---HhcceEEEecCC--CCCc-ccHHHHHcCCCCCC--CCCH----HHHHHHHHHhchHHHHHhcCCCcccccCC
Q 014366 256 IRLDS---LRRHVGLVSQDI--TLFS-GTVAENIGYRDLMT--KIDM----ERVEHTARTANADEFVRTLPQGYNTHIGP 323 (426)
Q Consensus 256 ~~~~~---~r~~i~~v~Q~~--~lf~-~ti~eni~~~~~~~--~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~ 323 (426)
.+..+ +|++++||||++ .+++ .|+.||+.++.... ..+. +.+.+.++.+++.+ ...+.
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHhcC
Confidence 76543 567899999998 4774 69999996531100 1222 23344455555521 12344
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeC
Q 014366 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDN 400 (426)
Q Consensus 324 ~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~ 400 (426)
.+.+||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||||++|++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5689999999999999999999999999999999999999999999998853 689999999999986 6999999999
Q ss_pred CEEEEeccccccccCc
Q 014366 401 GKLEELNRSTLLGSNH 416 (426)
Q Consensus 401 G~i~e~g~~~~l~~~~ 416 (426)
|+++|.|+++++.+++
T Consensus 238 G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 238 GHAVELGTYDEVYHNP 253 (331)
T ss_pred CEEEEEcCHHHHHcCC
Confidence 9999999988776553
No 133
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6.5e-49 Score=365.67 Aligned_cols=203 Identities=37% Similarity=0.600 Sum_probs=171.4
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEE
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v 268 (426)
+++|++++|++..+++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999975323699999999999999999999999999999999999999999999999998877667778899999
Q ss_pred ecCCC--CCcccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 269 SQDIT--LFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 269 ~Q~~~--lf~~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
||++. +++.|++||+.++......+ .+++.+.++..++.++.+ .++.+||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHHHH
Confidence 99984 56779999997642211111 223444555555554443 45579999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCE
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~ 402 (426)
+.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999998753 689999999999987 599999999985
No 134
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.6e-49 Score=367.29 Aligned_cols=207 Identities=33% Similarity=0.460 Sum_probs=174.9
Q ss_pred EEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 188 i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
|+++|++++|++.. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999997521 369999999999999999999999999999999999999999999999998753 35789
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
+|+||++.+|+ .|++||+.++......+ .+++.++++..++.++.++ ...+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENA-----------YPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CcccCCHHHHHHHHHHH
Confidence 99999999887 59999997642211111 2345556666666555544 44799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEe--CCEEEEecccc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLD--NGKLEELNRST 410 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~--~G~i~e~g~~~ 410 (426)
||+.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+. .||++++|+ +|++++.++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999874 3689999999999875 799999999 79999887654
No 135
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=9.4e-49 Score=370.94 Aligned_cols=218 Identities=30% Similarity=0.460 Sum_probs=181.3
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++.++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEEE
Confidence 789999999975 3599999999999999999999999999999999999999999999999998766543 3458999
Q ss_pred EecCCCCC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 268 VSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 268 v~Q~~~lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
+||++.++ ..|++||+.+.......+.++..+ .+.++++.+ |++...+..+.+||||||||++||||++++|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999885 569999997643211222211111 122333333 4555556677899999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+..||++++|++|++++.|+++.+.++
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 9999999999999999999999999875 36899999999999888999999999999999988766543
No 136
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.3e-48 Score=364.24 Aligned_cols=205 Identities=32% Similarity=0.557 Sum_probs=173.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++|
T Consensus 1 i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECCe--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 4789999999753 599999999999999999999999999999999999999999999999998765432 467999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||++.+|+ .|++||+.++....... .+++.++++..++.++.+. .+.+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDR-----------KPKQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999885 59999998752211112 2234455566666555444 4579999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
+.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999875 3689999999999876 69999999999999875
No 137
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-48 Score=377.18 Aligned_cols=222 Identities=31% Similarity=0.474 Sum_probs=186.9
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CC
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IR 257 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~--~~ 257 (426)
.+.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 17 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 357999999999975 3599999999999999999999999999999999999975 89999999999864 33
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC--C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 258 LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI--D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 258 ~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~--~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
...+|+.++|++|++.+|+.|++||+.++...... + .+++.++++.+++.+++. +..+..+.+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHH
Confidence 45678889999999999988999999864311111 1 233455666666644321 2234567899999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~ 410 (426)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.++.|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999866789999999999985 79999999999999999988
Q ss_pred ccccC
Q 014366 411 LLGSN 415 (426)
Q Consensus 411 ~l~~~ 415 (426)
++..+
T Consensus 248 ~~~~~ 252 (267)
T PRK14235 248 KMFTN 252 (267)
T ss_pred HHHhC
Confidence 77654
No 138
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9.8e-49 Score=371.70 Aligned_cols=216 Identities=31% Similarity=0.467 Sum_probs=181.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC--HHHHhcce
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR--LDSLRRHV 265 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~--~~~~r~~i 265 (426)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 789999999975 35999999999999999999999999999999999999999999999999987542 34567889
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCC-CCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDL-MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~-~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
+|+||++.+|+ .|++||+.++.. ....+. +++.++++..++ +...+..+.+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGL-----------AERAHHYPSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hHHHhcChhhcCHHHHHHHHHH
Confidence 99999999886 599999987421 111122 223344444444 4444455689999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
||++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++.+++
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 99999999999999999999999999999999875 4689999999999985 69999999999999999987765543
No 139
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.3e-48 Score=360.28 Aligned_cols=199 Identities=34% Similarity=0.568 Sum_probs=180.1
Q ss_pred EEEEeEEEEeCCCC---CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 188 VKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
|+++||+++|++.. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 47899999997642 3699999999999999999999999999999999999999999999998 5
Q ss_pred eEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 265 i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
++|++|++.+|+.|++||+.+... .+.++..++++.+++.+++..+|.|+++.+++++.+||||||||++||||++.
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~ 144 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP---FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS 144 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC---cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999988643 23455667788889999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHH-HHHHc-CCceEEEeccChHHHHhcCEEEEEeCCE
Q 014366 345 NSSVLILDEATSALDSRSELLVRQA-VDRLL-GHHTVLVIAHHLETVMMAKRVFLLDNGK 402 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~-l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~G~ 402 (426)
+|+++||||||++||+.+.+.+.+. +++.. ++.|+|++||+++.+..||++++|++|+
T Consensus 145 ~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 145 DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999999999884 56553 4689999999999987899999999985
No 140
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-48 Score=375.91 Aligned_cols=222 Identities=32% Similarity=0.461 Sum_probs=186.3
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CC
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IR 257 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~--~~ 257 (426)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 346999999999975 359999999999999999999999999999999999986 589999999999853 34
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHcCCCCCC-CCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 258 LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMT-KIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 258 ~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~-~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
...+|++++|+||++.+|+.|++||+.++.... ..+. +++.++++.+++.+.+ .+.+++.+.+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHHH
Confidence 456788999999999999899999998753211 1122 3345555555543222 223455678999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++.++.|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999866789999999999885 799999999999999999887
Q ss_pred cccC
Q 014366 412 LGSN 415 (426)
Q Consensus 412 l~~~ 415 (426)
+.++
T Consensus 242 ~~~~ 245 (260)
T PRK10744 242 IFTK 245 (260)
T ss_pred HHhC
Confidence 7654
No 141
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-49 Score=379.91 Aligned_cols=215 Identities=29% Similarity=0.487 Sum_probs=182.0
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH----hcc
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL----RRH 264 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~----r~~ 264 (426)
.++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQT--VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCCc--eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 467888888753 59999999999999999999999999999999999999999999999999877654432 457
Q ss_pred eEEEecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 265 VGLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
++|+||++.+|+ .|++||+.++......+ .+++.++++.+++.+++++.| .+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 999999999885 59999997642111111 234556677777766665544 68999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|||+++|++|||||||++||+.+++.+.+.|+++. + ++|+|++||+++.+. .||++++|++|++++.|+++++.+++
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999999874 3 689999999999875 79999999999999999988776544
No 142
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-48 Score=378.05 Aligned_cols=219 Identities=29% Similarity=0.423 Sum_probs=181.3
Q ss_pred cEEEEeEEEEeCCCC---CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----CHH
Q 014366 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~----~~~ 259 (426)
.|+++||+++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 378999999997532 3599999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhcceEEEecCC--CCCcccHHHHHcCCCCCCCCCHHH----HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 260 SLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 260 ~~r~~i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
.+++.++|+||++ .+|+.|++||+.++......+.++ +.++++..++.+ .....++.+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~ 151 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQM 151 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHH
Confidence 6778899999997 577889999998642211122222 223333333321 234556789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||++||+++.+. .||++++|++|++++.|++++
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999998753 689999999999885 799999999999999998877
Q ss_pred cccC
Q 014366 412 LGSN 415 (426)
Q Consensus 412 l~~~ 415 (426)
+.++
T Consensus 232 ~~~~ 235 (280)
T PRK13649 232 IFQD 235 (280)
T ss_pred HhcC
Confidence 6554
No 143
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.5e-49 Score=382.88 Aligned_cols=215 Identities=33% Similarity=0.491 Sum_probs=187.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++++||+++|++. +.+|+||||+|++||++|++||||||||||+|+|+|+.+|++|+|.++|.+...- ..+.++++|
T Consensus 4 ~i~~~~l~k~~~~~-~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGGD-KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCCC-CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 47889999999832 3699999999999999999999999999999999999999999999999988654 667889999
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCC----CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTK----IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
|+||++.+++. |++||+.|...... ...+++.+.++..++.+.. +.+...||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 99999998865 99999987433222 2245677788877776632 23567999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-C-ceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-H-HTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|+.+|++|||||||+||||.++..+.+.|+++.+ + +||+++||.++.+. .||||++|++|+++..|+++++..
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999864 4 69999999999997 599999999999999998876653
No 144
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-48 Score=378.86 Aligned_cols=219 Identities=29% Similarity=0.423 Sum_probs=181.3
Q ss_pred cEEEEeEEEEeCCCC---CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----CHH
Q 014366 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~----~~~ 259 (426)
.|+++|++++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999997421 3599999999999999999999999999999999999999999999999998643 234
Q ss_pred HHhcceEEEecCC--CCCcccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 260 SLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 260 ~~r~~i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
..++.++|+||++ .+|+.|++||+.++......+. +++.++++.+++.. .....+..+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE----------DLISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhhCCcccCCHHHH
Confidence 5677899999998 4677899999986432111222 22334444444421 233456689999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++. ++.|||++||+++.+. .||++++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999885 4689999999999885 799999999999999999887
Q ss_pred cccC
Q 014366 412 LGSN 415 (426)
Q Consensus 412 l~~~ 415 (426)
+.++
T Consensus 232 ~~~~ 235 (287)
T PRK13641 232 IFSD 235 (287)
T ss_pred HhcC
Confidence 6554
No 145
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-48 Score=374.75 Aligned_cols=217 Identities=31% Similarity=0.403 Sum_probs=187.0
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 10 ~~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 10 TTFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred ceEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 35999999999975 3599999999999999999999999999999999999999999999999998877777788899
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCC--------CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLM--------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
+|+||++.+++. |+.||+.++... .....+++.++++.+++.++++.. ..+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----------VDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------cccCCHHHHHHH
Confidence 999999877654 999999875310 011233456677777776655543 468999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+||||++.+|++|||||||++||+.+++.+.+.|.++. . +.|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999999874 2 689999999999885 79999999999999999887765
Q ss_pred cC
Q 014366 414 SN 415 (426)
Q Consensus 414 ~~ 415 (426)
+.
T Consensus 237 ~~ 238 (265)
T PRK10575 237 RG 238 (265)
T ss_pred CH
Confidence 43
No 146
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-48 Score=376.07 Aligned_cols=219 Identities=26% Similarity=0.396 Sum_probs=182.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC--CCCHHHHhcce
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ--NIRLDSLRRHV 265 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~--~~~~~~~r~~i 265 (426)
|+++||+++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+.+
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 789999999975 35999999999999999999999999999999999999999999999999985 23345667889
Q ss_pred EEEecCCC--CCcccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDIT--LFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~~--lf~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
+|+||++. ++..|+.+|+.++......+. +++.++++..++.++. ...+.+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHHHH
Confidence 99999986 456789999976421111222 2334455555555443 335679999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
|||+.+|++|||||||++||+.++..+.+.|+++. ++.|+|++||+++.+. .||++++|++|++++.|+++++.++..
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 228 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTE 228 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcChh
Confidence 99999999999999999999999999999999875 4689999999999985 799999999999999999877765543
Q ss_pred hh
Q 014366 418 SL 419 (426)
Q Consensus 418 ~l 419 (426)
..
T Consensus 229 ~~ 230 (271)
T PRK13638 229 AM 230 (271)
T ss_pred HH
Confidence 33
No 147
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-49 Score=351.82 Aligned_cols=214 Identities=26% Similarity=0.427 Sum_probs=187.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
+++.+++++|++. ..+++||||+++.||++||.|||||||||++++|++++.|++|.|++||.|.... +...|++||+
T Consensus 2 l~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcce
Confidence 6889999999873 3589999999999999999999999999999999999999999999999998764 5678999999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
++-+..++. .|++|||.|.....+.+ +.++.+..+..++.+.+++ +..++|.||||||+|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~r-----------Rv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDR-----------RVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHH-----------HHhhhchhhHHHHHHHHHH
Confidence 998888885 59999998754332322 3445555666666666544 6789999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
+++|++++|||||||||..+.+.+.+.+.+++. +++||+.||.+++++ .||||+++++|+++..|+++.+..
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 999999999999999999999999999999975 899999999999997 899999999999999999876654
No 148
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-48 Score=373.43 Aligned_cols=221 Identities=29% Similarity=0.406 Sum_probs=185.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCCCHHHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNIRLDSL 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~~~~~~~ 261 (426)
.|+++||+++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQV--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 48999999999753 599999999999999999999999999999999999974 69999999999987777778
Q ss_pred hcceEEEecCCCCC-cccHHHHHcCCCCCCC--CC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 262 RRHVGLVSQDITLF-SGTVAENIGYRDLMTK--ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 262 r~~i~~v~Q~~~lf-~~ti~eni~~~~~~~~--~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
++.++|+||++.+| ..|++||+.++..... .. .+++.++++.+++.+.+ +...+..+.+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-------KDRLDAPAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCCcccCCHHHHH
Confidence 88999999999866 5699999986432111 01 22344555555543322 12344567899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++|||||+++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 99999999999999999999999999999999999999866789999999999885 79999999999999999988776
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
+++
T Consensus 234 ~~~ 236 (250)
T PRK14247 234 TNP 236 (250)
T ss_pred cCC
Confidence 553
No 149
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.5e-48 Score=382.83 Aligned_cols=214 Identities=30% Similarity=0.433 Sum_probs=180.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 5899999999975 3599999999999999999999999999999999999999999999999998653 345678899
Q ss_pred EEecCCCCCc-ccHHHHHcCCCCCCCCCHH----HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFS-GTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
|+||++.+++ .|++||+.+.......+.. ++.++++..++.+ .......+||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-----------~~~~~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-----------KADVRVALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-----------HhcCchhhCCHHHHHHHHHHHH
Confidence 9999999885 5999999753211112222 2333344444433 3344567999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|+.+|++|||||||++||+.+++.+.+.|+++. ++.|||++||+++.+. .||++++|++|++++.|+++++..
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999875 4689999999999986 799999999999999999877653
No 150
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-48 Score=375.63 Aligned_cols=221 Identities=30% Similarity=0.468 Sum_probs=185.5
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~--~~~ 258 (426)
..|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 12 ~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 12 IIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred ceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 46999999999975 359999999999999999999999999999999999987 689999999998853 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCC---HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID---MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
.++|+.++|+||++.+|+.|++||+.++....... ++++.++++.+++.. ++++.....+.+||||||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-------ECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-------hhhhhhCCCcccCCHHHHHH
Confidence 67788899999999999889999998754322111 223344455444422 22334556778999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeC-----------CEE
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDN-----------GKL 403 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~-----------G~i 403 (426)
++|||||+.+|++|||||||++||+.+++.+.+.|+++.++.|+|++||+++.+. .||++++|++ |++
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~ 242 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYL 242 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceE
Confidence 9999999999999999999999999999999999999876789999999999885 7999999996 678
Q ss_pred EEeccccccccC
Q 014366 404 EELNRSTLLGSN 415 (426)
Q Consensus 404 ~e~g~~~~l~~~ 415 (426)
++.|+++++.++
T Consensus 243 ~~~~~~~~~~~~ 254 (269)
T PRK14259 243 VEFNETKKIFNS 254 (269)
T ss_pred EEeCCHHHHHhC
Confidence 999998877654
No 151
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2e-48 Score=363.08 Aligned_cols=204 Identities=37% Similarity=0.543 Sum_probs=173.2
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH---HHHhcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL---DSLRRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~---~~~r~~ 264 (426)
++++|++++|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4689999999753 369999999999999999999999999999999999999999999999999876653 246778
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
++|++|++.+|+. |++||+.++......+ .+++.++++..++.+..++ ...+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRA-----------LPAELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHH
Confidence 9999999999874 9999998643211111 2344556666666555444 4469999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEE
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i 403 (426)
||++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999874 4689999999999986 6999999999974
No 152
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-48 Score=376.61 Aligned_cols=221 Identities=28% Similarity=0.465 Sum_probs=184.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC--CCHHHHhcce
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN--IRLDSLRRHV 265 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~--~~~~~~r~~i 265 (426)
|+++|++++|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+++.+
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 7899999999743 359999999999999999999999999999999999999999999999999852 2334577889
Q ss_pred EEEecCC--CCCcccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDI--TLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
+|+||++ .+|+.|++||+.++........ +++.++++.+++.++. ...+.+||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-----------NKPPHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-----------cCChhhCCHHHHHHHHHH
Confidence 9999997 4677899999986432111121 2344455555554433 345679999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
||++.+|+++||||||++||+.++..+.+.|+++. ++.|||++||+++.+. .||++++|++|++++.|+++++.++..
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 229 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIE 229 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcChH
Confidence 99999999999999999999999999999999885 3789999999999886 799999999999999999888766544
Q ss_pred hhh
Q 014366 418 SLV 420 (426)
Q Consensus 418 ~l~ 420 (426)
.+.
T Consensus 230 ~~~ 232 (275)
T PRK13639 230 TIR 232 (275)
T ss_pred HHH
Confidence 333
No 153
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.3e-48 Score=382.62 Aligned_cols=214 Identities=25% Similarity=0.434 Sum_probs=183.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++++|++++|++ +.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....++++++
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 2 SIRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 3789999999975 359999999999999999999999999999999999999999999999999876 3456788999
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
|+||++.+|+. |++||+.+.......+ .+++.++++..++ +...+....+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGL-----------RPEQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-----------chHhcCchhhCCHHHHHHHHHHHH
Confidence 99999999865 9999997532211122 1233444444444 444455678999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|+.+|++|||||||+|||+.+++.+.+.|+++.+++|||++||+++.+. .||||++|++|+++..|+++++..
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999877789999999999886 799999999999999999887643
No 154
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.4e-48 Score=387.39 Aligned_cols=214 Identities=30% Similarity=0.430 Sum_probs=181.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ...++.+|
T Consensus 41 ~i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 59999999999753 5999999999999999999999999999999999999999999999999987543 46788999
Q ss_pred EEecCCCCCc-ccHHHHHcCCCCCCCCCHH----HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFS-GTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
|+||++.+++ .|++||+.+.......+.. ++.++++.+++ +........+||||||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L-----------~~~~~~~~~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-----------ESKADARVSDLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------chhhCCChhhCCHHHHHHHHHHHH
Confidence 9999999874 5999999753221122222 22233333333 333444567999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|+.+|++|||||||+|||+.+++.+.+.|+++. +++|||++||+++.+. .||||++|++|+++..|+++++.+
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999985 4789999999999986 799999999999999999887754
No 155
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.7e-48 Score=363.55 Aligned_cols=203 Identities=36% Similarity=0.524 Sum_probs=173.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHhcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLRRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r~~ 264 (426)
|+++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999532 3699999999999999999999999999999999999999999999999998876533 46778
Q ss_pred eEEEecCCCCCc-ccHHHHHcCCCCCCCC----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 265 VGLVSQDITLFS-GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eni~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
++|++|++.+|+ .|++||+.++...... ..+++.++++..++.++.++. ..+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAF-----------PEQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHHHHH
Confidence 999999999886 5999999764211111 124456667777766655443 469999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCE
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~ 402 (426)
|||+.+|+++||||||++||+.++..+.+.|+++. +++|+|++||+++.+. .||++++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999875 4789999999999886 699999999985
No 156
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-48 Score=378.87 Aligned_cols=221 Identities=26% Similarity=0.431 Sum_probs=181.2
Q ss_pred ccEEEEeEEEEeCCCC---CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC----C-C
Q 014366 186 GDVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN----I-R 257 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~----~-~ 257 (426)
+.|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5699999999997532 259999999999999999999999999999999999999999999999998752 1 3
Q ss_pred HHHHhcceEEEecCC--CCCcccHHHHHcCCCCCCCCCHHH----HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 258 LDSLRRHVGLVSQDI--TLFSGTVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 258 ~~~~r~~i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
...+|+.++|++|++ .+|+.|++||+.++........++ +.+.++..++ | +...+..+.+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~---~~~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------P---EDYVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------C---hhHhcCChhhCCHH
Confidence 456778899999998 356779999998753211122222 2223333332 1 12345567899999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~ 408 (426)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||++||+++.+. .||++++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998753 689999999999875 799999999999999999
Q ss_pred ccccccCc
Q 014366 409 STLLGSNH 416 (426)
Q Consensus 409 ~~~l~~~~ 416 (426)
++++.+++
T Consensus 235 ~~~~~~~~ 242 (289)
T PRK13645 235 PFEIFSNQ 242 (289)
T ss_pred HHHHhcCH
Confidence 87766544
No 157
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.3e-48 Score=369.53 Aligned_cols=220 Identities=25% Similarity=0.373 Sum_probs=183.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i 265 (426)
.|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.+
T Consensus 2 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 2 ILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred eEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 3789999999975 359999999999999999999999999999999999999999999999999877665543 4579
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCC--------CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTK--------IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
+|+||++.+|+. |++||+.++..... ...++ ....+.++++.+ |++........+||||||||+
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv 152 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAE-----EKDRIEEVLETI--GLADEADRLAGLLSHGQKQWL 152 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHH-----HHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHH
Confidence 999999999976 99999987532100 00010 011123333333 455555667789999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+||||++.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.++
T Consensus 153 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 232 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQAD 232 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhcC
Confidence 999999999999999999999999999999999999876789999999999986 6999999999999999998877654
No 158
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.6e-48 Score=372.45 Aligned_cols=221 Identities=33% Similarity=0.494 Sum_probs=181.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC--------H
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR--------L 258 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~--------~ 258 (426)
.++++|++++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 48999999999753 5999999999999999999999999999999999999999999999999986432 2
Q ss_pred HHHhcceEEEecCCCCCc-ccHHHHHcCCCC-CCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 259 DSLRRHVGLVSQDITLFS-GTVAENIGYRDL-MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~-~ti~eni~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
..+++.++|+||++.+|+ .|++||+.++.. ......++..+. +.+.++.+ |++...+..+.+||||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHHH
Confidence 456778999999999886 599999976421 011121111111 12233332 444444556789999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
+|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999998754 689999999999985 699999999999999999887765
Q ss_pred Cc
Q 014366 415 NH 416 (426)
Q Consensus 415 ~~ 416 (426)
++
T Consensus 234 ~~ 235 (250)
T PRK11264 234 DP 235 (250)
T ss_pred CC
Confidence 43
No 159
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-48 Score=372.63 Aligned_cols=221 Identities=31% Similarity=0.453 Sum_probs=184.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC--C---CccEEEEcCEeCCC--CCHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--P---LSGCILVDDHDVQN--IRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~--p---~~G~I~~~g~~i~~--~~~~ 259 (426)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 5899999999975 359999999999999999999999999999999999997 3 59999999999863 3345
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCC-CCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-IDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~-~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+++.++|+||++.+|+.|++||+.++..... .+. +++.++++..++.+++ .+.++..+.+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHH
Confidence 67788999999999998899999987532111 111 2233445555543322 12345577899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++||||++.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .|||+++|++|++++.|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999999876789999999999885 79999999999999999998876
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
+++
T Consensus 243 ~~~ 245 (259)
T PRK14274 243 SNP 245 (259)
T ss_pred hCC
Confidence 554
No 160
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-48 Score=367.49 Aligned_cols=216 Identities=28% Similarity=0.413 Sum_probs=180.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i 265 (426)
.|+++|++++|++ +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +++.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999975 36999999999999999999999999999999999999999999999999988776544 56789
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCCC--CHHHHHHHHHHh-chHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTKI--DMERVEHTARTA-NADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~~--~~~~~~~~~~~~-~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
+|++|++.+|+. |++||+.++...... ..+++.++++.. ++.+ .......+||||||||++||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-----------RRIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-----------HHhCchhhCCHHHHHHHHHHHH
Confidence 999999999875 999999875321111 011222223322 1222 2234567999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccccC
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+ +.|||+++|++|++++.|+++++..+
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999875 478999999999877 47999999999999999999887654
No 161
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-48 Score=392.49 Aligned_cols=202 Identities=31% Similarity=0.507 Sum_probs=173.0
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH----hcceEEEecCCCCCc-cc
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL----RRHVGLVSQDITLFS-GT 278 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~-~t 278 (426)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+...+ +++++|+||++.+|+ .|
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 7999999999999999999999999999999999999999999999999987765543 457999999999986 49
Q ss_pred HHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeecc
Q 014366 279 VAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354 (426)
Q Consensus 279 i~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEp 354 (426)
++||+.++......+ .+++.++++.+++.++.++ ...+||||||||++|||||+.+|++||||||
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~-----------~~~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS-----------YPDELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999998753211122 2344555666666555544 4479999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 355 TSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 355 ts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|++||+.+++.+.+.|.++. .++|+|++||+++.+. .||+|++|++|++++.|+++++.+++
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~ 256 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCc
Confidence 99999999999999999874 3689999999999875 79999999999999999988776553
No 162
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=4.8e-48 Score=362.74 Aligned_cols=206 Identities=30% Similarity=0.443 Sum_probs=173.8
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHhcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLRRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r~~ 264 (426)
|+++|++++|++. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999432 3699999999999999999999999999999999999999999999999998766543 35788
Q ss_pred eEEEecCCCCC-cccHHHHHcCCCCCCCCCHH----HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 265 VGLVSQDITLF-SGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 265 i~~v~Q~~~lf-~~ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
++|+||++.+| ..|++||+.++......+.+ ++.++++..++.++.++ ...+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-----------FPIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CchhCCHHHHHHHHHH
Confidence 99999999875 56999999875321122222 33455565565554443 4579999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEE
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e 405 (426)
||++.+|++|||||||++||+.+++.+.+.|+++. ++.|+|++||+++.+. .||++++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999999875 4689999999999986 699999999999863
No 163
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-48 Score=373.80 Aligned_cols=220 Identities=29% Similarity=0.403 Sum_probs=183.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCC--CCCHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQ--NIRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~--~~~~~ 259 (426)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999975 3599999999999999999999999999999999999987 4999999999986 34455
Q ss_pred HHhcceEEEecCCCCCcc-cHHHHHcCCCCCCCC--CH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKI--DM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~--~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
.++++++|+||++.+|+. |++||+.++...... +. +++.++++..++.+.+ ....+..+.+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV-------KDRLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch-------hhhhccChhhCCHHH
Confidence 678889999999999975 999999864211110 11 2334445554443222 123455678999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
|||++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999866789999999999875 799999999999999999887
Q ss_pred cccC
Q 014366 412 LGSN 415 (426)
Q Consensus 412 l~~~ 415 (426)
+.++
T Consensus 235 ~~~~ 238 (253)
T PRK14267 235 VFEN 238 (253)
T ss_pred HHhC
Confidence 7654
No 164
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.3e-48 Score=375.29 Aligned_cols=216 Identities=24% Similarity=0.382 Sum_probs=181.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHhc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLRR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r~ 263 (426)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+++
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 5899999999975 3599999999999999999999999999999999999999999999999998765543 3467
Q ss_pred ceEEEecCCCCCcc-cHHHHHcCCCCC-CCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 264 HVGLVSQDITLFSG-TVAENIGYRDLM-TKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eni~~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
.++|+||++.+|+. |++||+.++... ...+. +++.+.++..++.+. ......+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGA-----------AKLMPSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHH
Confidence 89999999999875 999999764211 11121 223344454444443 34456799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998753 689999999999886 699999999999999999887765
Q ss_pred C
Q 014366 415 N 415 (426)
Q Consensus 415 ~ 415 (426)
+
T Consensus 234 ~ 234 (269)
T PRK11831 234 N 234 (269)
T ss_pred C
Confidence 4
No 165
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.2e-48 Score=365.79 Aligned_cols=214 Identities=27% Similarity=0.401 Sum_probs=179.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-HhcceE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHVG 266 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i~ 266 (426)
|+++||+++|++. ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCCe--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 4789999999753 5999999999999999999999999999999999999999999999999988776544 466899
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCC-HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKID-MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
|+||++.+|+. |++||+.++....... .+...++++..+ +++...+....+||||||||++||||+++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999876 9999998653221111 112233333322 12233445678999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+|+++||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 9999999999999999999999999998753 689999999999987 69999999999999999988763
No 166
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.6e-48 Score=371.51 Aligned_cols=215 Identities=33% Similarity=0.490 Sum_probs=180.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----------
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---------- 257 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~---------- 257 (426)
|+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 578999999975 36999999999999999999999999999999999999999999999999886542
Q ss_pred ---HHHHhcceEEEecCCCCCc-ccHHHHHcCCCCC-CCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCC
Q 014366 258 ---LDSLRRHVGLVSQDITLFS-GTVAENIGYRDLM-TKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSL 328 (426)
Q Consensus 258 ---~~~~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~L 328 (426)
...+++.++|++|++.+|+ .|++||+.++... .... .+++.++++..++.++. +..+.+|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKA-----------DHMPAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-----------hcChhhc
Confidence 2356788999999999885 6999999864210 1111 12334445555554444 4455799
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEE
Q 014366 329 SGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405 (426)
Q Consensus 329 SgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e 405 (426)
|||||||++|||||+.+|+++||||||++||+.++..+.+.|+++.+ +.|+|++||+++.+. .|||+++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998753 689999999999985 799999999999999
Q ss_pred eccccccccC
Q 014366 406 LNRSTLLGSN 415 (426)
Q Consensus 406 ~g~~~~l~~~ 415 (426)
.|+++++.++
T Consensus 228 ~g~~~~~~~~ 237 (252)
T TIGR03005 228 QGKPDEIFRQ 237 (252)
T ss_pred eCCHHHHhcC
Confidence 9998877654
No 167
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.1e-48 Score=364.55 Aligned_cols=209 Identities=29% Similarity=0.388 Sum_probs=177.4
Q ss_pred cEEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---H
Q 014366 187 DVKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---L 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~ 261 (426)
.|+++|++++|++.. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 589999999997532 24999999999999999999999999999999999999999999999999988766543 2
Q ss_pred -hcceEEEecCCCCCcc-cHHHHHcCCCCCCCC----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 262 -RRHVGLVSQDITLFSG-TVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 262 -r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
++.++|+||++.+|+. |++||+.++...... ..+++.++++..++.++.++. +.+||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHL-----------PAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHH
Confidence 3579999999998875 999999763211111 123456666777766655543 46899999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHHhcCEEEEEeCCEEEEe
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVMMAKRVFLLDNGKLEEL 406 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~ 406 (426)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++. + +.|||++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999874 3 6899999999998888999999999999764
No 168
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-48 Score=370.81 Aligned_cols=216 Identities=29% Similarity=0.435 Sum_probs=185.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 2 TLRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 3789999999975 36999999999999999999999999999999999999999999999999987777777788899
Q ss_pred EEecCCCCCcc-cHHHHHcCCCC-----CC---CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDL-----MT---KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~-----~~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
|+||++.+++. |++||+.++.. .. ....+++.++++..++.++.+ ..+..||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHHH
Confidence 99999998865 99999987521 00 111234455566666655443 355799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||||++.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++.++
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 228 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH
Confidence 9999999999999999999999999999999999875 4689999999999885 7999999999999999988776543
No 169
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-48 Score=369.83 Aligned_cols=216 Identities=29% Similarity=0.383 Sum_probs=184.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 3789999999975 35999999999999999999999999999999999999999999999999988777777778899
Q ss_pred EEecCCCC-CcccHHHHHcCCCCCCCC----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITL-FSGTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~l-f~~ti~eni~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
|+||++.+ +..|++||+.++...... ..+++.++++..++.++.+ ....+||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-----------RDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence 99999987 467999999875321111 1233455566666555443 3557999999999999999
Q ss_pred hc------CCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 342 LY------QNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 342 l~------~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
|+ .+|++|||||||++||+.+++.+.+.|+++. .+.|||++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999875 3689999999999886 7999999999999999988766
Q ss_pred ccC
Q 014366 413 GSN 415 (426)
Q Consensus 413 ~~~ 415 (426)
.+.
T Consensus 229 ~~~ 231 (258)
T PRK13548 229 LTP 231 (258)
T ss_pred hCh
Confidence 543
No 170
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-48 Score=372.68 Aligned_cols=223 Identities=28% Similarity=0.424 Sum_probs=187.0
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CC
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IR 257 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~--~~ 257 (426)
...|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 18 ~~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 18 EIALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred CeEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 346999999999964 469999999999999999999999999999999999996 589999999999864 23
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 258 LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 258 ~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
...+++.++|+||++.+|+.|++||+.++...... + ++++.++++..++.+.+ ++.++..+.+|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHH
Confidence 45668889999999999988999999875321111 1 12344455555553322 234556788999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
|||++||||++++|++|||||||++||+.++..+.+.|+++.++.|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999876789999999999885 799999999999999999887
Q ss_pred cccCc
Q 014366 412 LGSNH 416 (426)
Q Consensus 412 l~~~~ 416 (426)
+.+++
T Consensus 249 ~~~~~ 253 (267)
T PRK14237 249 IFTNP 253 (267)
T ss_pred HhcCC
Confidence 76543
No 171
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-48 Score=368.94 Aligned_cols=221 Identities=33% Similarity=0.517 Sum_probs=184.2
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~--~~~ 258 (426)
+.|+++||+++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 358999999999753 599999999999999999999999999999999999863 69999999999864 344
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
..+|+.++|++|++.+|+.|++||+.++...... + .+++.++++.+++.+.+ ....+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEV-------KDRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------HHHHhcCCCCCCHHHH
Confidence 5678889999999999889999999875321111 1 23344445555543222 1234456789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .|||+++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999866789999999999875 6999999999999999998876
Q ss_pred ccC
Q 014366 413 GSN 415 (426)
Q Consensus 413 ~~~ 415 (426)
..+
T Consensus 233 ~~~ 235 (250)
T PRK14240 233 FTN 235 (250)
T ss_pred HhC
Confidence 654
No 172
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=3.9e-48 Score=351.23 Aligned_cols=178 Identities=35% Similarity=0.576 Sum_probs=164.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++..+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 478999999976433699999999999999999999999999999999999999999999999988655 5567888999
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
++|++.+|+.|++||+ +.+||||||||++||||++.+|+
T Consensus 80 ~~q~~~~~~~tv~~~i-----------------------------------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 80 LNQRPYLFDTTLRNNL-----------------------------------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred EccCCeeecccHHHhh-----------------------------------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999988999997 36899999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEec
Q 014366 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELN 407 (426)
Q Consensus 348 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g 407 (426)
+|||||||++||+.+++.+.+.|+++.++.|+|++||+++.+..||++++|++|++++.|
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999886678999999999999889999999999998764
No 173
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-48 Score=370.96 Aligned_cols=220 Identities=28% Similarity=0.434 Sum_probs=183.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCCC--HH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNIR--LD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~~~--~~ 259 (426)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++...+ ..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 6999999999975 3599999999999999999999999999999999999985 7999999999886432 34
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
.+++.++|+||++.+|+.|++||+.++......+. +++.++++.+++.+.+ ....+..+.+||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHHH
Confidence 56778999999999988999999986422111222 2234445544442211 223455678999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .|||+++|++|++++.|+++++..
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999999866789999999999885 799999999999999999887765
Q ss_pred C
Q 014366 415 N 415 (426)
Q Consensus 415 ~ 415 (426)
+
T Consensus 243 ~ 243 (258)
T PRK14268 243 N 243 (258)
T ss_pred C
Confidence 4
No 174
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=3.5e-48 Score=371.66 Aligned_cols=218 Identities=32% Similarity=0.450 Sum_probs=182.0
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC---------
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI--------- 256 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~--------- 256 (426)
+.|+++||+++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 4 NKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred ccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 46999999999975 3599999999999999999999999999999999999999999999999987532
Q ss_pred ----CHHHHhcceEEEecCCCCCcc-cHHHHHcCCCC-CCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCC
Q 014366 257 ----RLDSLRRHVGLVSQDITLFSG-TVAENIGYRDL-MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGS 326 (426)
Q Consensus 257 ----~~~~~r~~i~~v~Q~~~lf~~-ti~eni~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~ 326 (426)
....+++.++|+||++.+|+. |++||+.++.. ..... .+++.++++..++.++. .+..+.
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~ 151 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYPV 151 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcc
Confidence 124567889999999999975 99999976321 01111 22334445554444332 134568
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEE
Q 014366 327 SLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLE 404 (426)
Q Consensus 327 ~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~ 404 (426)
+||||||||++|||||+++|+++||||||++||+.+++.+.+.|+++. .++|+|+|||+++.+. .||||++|++|+++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999885 4789999999999987 69999999999999
Q ss_pred EeccccccccC
Q 014366 405 ELNRSTLLGSN 415 (426)
Q Consensus 405 e~g~~~~l~~~ 415 (426)
+.|+++++.++
T Consensus 232 ~~~~~~~~~~~ 242 (257)
T PRK10619 232 EEGAPEQLFGN 242 (257)
T ss_pred EeCCHHHhhhC
Confidence 99998876544
No 175
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-48 Score=370.23 Aligned_cols=221 Identities=31% Similarity=0.474 Sum_probs=183.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC---CCC--CccEEEEcCEeCCCC--CHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL---YDP--LSGCILVDDHDVQNI--RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~---~~p--~~G~I~~~g~~i~~~--~~~ 259 (426)
.|+++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5899999999975 3599999999999999999999999999999999997 455 589999999998653 235
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+++.++|+||++.+|+.|++||+.++...... .++++.++++.+++.+++ .+..+..+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHHH
Confidence 667889999999999988999999764221111 112334445544443222 23345677899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|||++||+++.+. .|||+++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999999876789999999999885 79999999999999999998876
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
+++
T Consensus 234 ~~~ 236 (250)
T PRK14245 234 TNP 236 (250)
T ss_pred cCC
Confidence 554
No 176
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-48 Score=369.41 Aligned_cols=222 Identities=25% Similarity=0.443 Sum_probs=182.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i 265 (426)
.|+++|++++|++ .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 4899999999975 369999999999999999999999999999999999999999999999999987765554 4569
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCC-------C------CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMT-------K------IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~-------~------~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
+|+||++.+|+. |++||+.++.... . ..... .+ ....+.++++.+ |++...+.++.+||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~--gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SE--ALDRAATWLERV--GLLEHANRQAGNLAYG 157 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hH--HHHHHHHHHHhC--ChhhhhhCChhhCCHH
Confidence 999999999875 9999998752100 0 00000 00 001122333333 4555556677899999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~ 408 (426)
||||++||||++.+|++|||||||++||+.+++.+.+.|.++.+ +.|||++||+++.+. .||++++|++|++++.|+
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 237 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999998753 689999999999985 699999999999999999
Q ss_pred ccccccC
Q 014366 409 STLLGSN 415 (426)
Q Consensus 409 ~~~l~~~ 415 (426)
++++.++
T Consensus 238 ~~~~~~~ 244 (255)
T PRK11300 238 PEEIRNN 244 (255)
T ss_pred HHHHhhC
Confidence 8877654
No 177
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.2e-48 Score=362.74 Aligned_cols=200 Identities=30% Similarity=0.480 Sum_probs=168.9
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEE
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v 268 (426)
+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 36899999975 35999999999999999999999999999999999999999999999998763 467789999
Q ss_pred ecCCCC---CcccHHHHHcCCCCCC--------CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 269 SQDITL---FSGTVAENIGYRDLMT--------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 269 ~Q~~~l---f~~ti~eni~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
||++.+ ++.|++||+.++.... ....+++.++++..++.++.++ ...+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHH
Confidence 999876 4579999998753211 0112345566666666655544 45799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999875 5689999999999885 69999999886 55543
No 178
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4.1e-48 Score=364.31 Aligned_cols=213 Identities=34% Similarity=0.450 Sum_probs=172.7
Q ss_pred EEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH---HHHh
Q 014366 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL---DSLR 262 (426)
Q Consensus 188 i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~---~~~r 262 (426)
|+++||+++|++.. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999997531 259999999999999999999999999999999999999999999999999877653 4667
Q ss_pred cceEEEecCCC--CC-cccHHHHHcCCCCCC--CCCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHHHHH
Q 014366 263 RHVGLVSQDIT--LF-SGTVAENIGYRDLMT--KIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 263 ~~i~~v~Q~~~--lf-~~ti~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqkQRl 336 (426)
+.++|++|++. ++ ..|++||+.++.... ....+....+ ..+.++.+ |+. ...+..+.+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA-----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH-----HHHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 88999999993 44 469999997532111 1111111110 01223322 332 344556789999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
+|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||++||+++.+. .||++++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998853 689999999999987 79999999999998764
No 179
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-48 Score=371.88 Aligned_cols=216 Identities=28% Similarity=0.387 Sum_probs=185.5
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999975 3599999999999999999999999999999999999999999999999999877777777889
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCCC--------CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLMT--------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
+|+||++.+|. .|++||+.++.... ....+++.++++..++.++.+ ..+.+||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----------QSVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCChHHHHHH
Confidence 99999999875 59999997642100 011234455666666655543 35679999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+||||++.+|+++||||||++||+.+++.+.+.|.++.+ +.|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 689999999999875 79999999999999999887665
Q ss_pred c
Q 014366 414 S 414 (426)
Q Consensus 414 ~ 414 (426)
.
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 4
No 180
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-48 Score=382.18 Aligned_cols=220 Identities=28% Similarity=0.358 Sum_probs=182.4
Q ss_pred cEEEEeEEEEeCCC--------CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH
Q 014366 187 DVKFCNISFKYADN--------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL 258 (426)
Q Consensus 187 ~i~~~~v~~~y~~~--------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~ 258 (426)
.|+++|++++|+.. ...+++||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2368999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhcceEEEecCCC--CCc-ccHHHHHcCCCCC-CCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCC
Q 014366 259 D---SLRRHVGLVSQDIT--LFS-GTVAENIGYRDLM-TKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSS 327 (426)
Q Consensus 259 ~---~~r~~i~~v~Q~~~--lf~-~ti~eni~~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~ 327 (426)
. .+|++++||||++. +++ .|+.+|+...... ...+ .+++.++++.+++.+ ......+.+
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP----------EHYDRYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh----------HHhcCCCcc
Confidence 3 45778999999984 665 4999988532100 0111 234455566666532 112335579
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEE
Q 014366 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLE 404 (426)
Q Consensus 328 LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~ 404 (426)
||||||||++|||||+.+|++||+||||++||..++..+++.|+++.+ +.|+|+|||+++.+. .||||++|++|+++
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998853 689999999999996 69999999999999
Q ss_pred EeccccccccCc
Q 014366 405 ELNRSTLLGSNH 416 (426)
Q Consensus 405 e~g~~~~l~~~~ 416 (426)
|.|+++++.+++
T Consensus 235 e~g~~~~~~~~p 246 (327)
T PRK11308 235 EKGTKEQIFNNP 246 (327)
T ss_pred EECCHHHHhcCC
Confidence 999988777653
No 181
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-48 Score=368.07 Aligned_cols=221 Identities=31% Similarity=0.465 Sum_probs=185.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----ccEEEEcCEeCCCC--CHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCILVDDHDVQNI--RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~-----~G~I~~~g~~i~~~--~~~ 259 (426)
.|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5899999999975 35999999999999999999999999999999999999997 69999999988643 345
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCCC-----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID-----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+++.++|+||++.+|+.|++||+.++....... ++.+.++++..++.+.+ .+..+..+.+|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHHH
Confidence 6788899999999999889999998753211111 12233344444443322 23456678899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998866789999999999986 68999999999999999988776
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
.++
T Consensus 235 ~~~ 237 (251)
T PRK14249 235 SRP 237 (251)
T ss_pred hCC
Confidence 553
No 182
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-48 Score=373.24 Aligned_cols=222 Identities=32% Similarity=0.474 Sum_probs=184.0
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~--~~~ 258 (426)
..|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 23 ~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 23 VVFDTQNLNLWYGED--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred eEEEEeeeEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 369999999999753 59999999999999999999999999999999999997 699999999999853 334
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCC-H----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID-M----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~-~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
..+++.++|+||++.+|+.|++||+.++......+ . +.+.++++..++.+ ++....+.++.+||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHH
Confidence 56678899999999999889999998642211111 1 11223333332211 223344567789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999876789999999999985 7999999999999999998877
Q ss_pred ccCc
Q 014366 413 GSNH 416 (426)
Q Consensus 413 ~~~~ 416 (426)
.+++
T Consensus 254 ~~~~ 257 (271)
T PRK14238 254 FSNP 257 (271)
T ss_pred HcCC
Confidence 6554
No 183
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-47 Score=357.54 Aligned_cols=203 Identities=35% Similarity=0.523 Sum_probs=174.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++. . .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 4789999999752 2 39999999999999999999999999999999999999999999999876543 3578999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCC-C---CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMT-K---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
++|++.+|+. |++||+.++.... . ..++++.++++.+++.++.++.| .+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999875 9999998753211 1 12345666777777776665544 68999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
+.+|+++||||||++||+.+++.+.+.|+++. .+.|+|++||+++.+. .||++++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999875 2689999999999985 69999999999998764
No 184
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-47 Score=367.42 Aligned_cols=205 Identities=32% Similarity=0.465 Sum_probs=177.5
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.+
T Consensus 11 ~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred CcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 35999999999975 35999999999999999999999999999999999999999999999998753 457789
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
+|++|++.+|+ .|++||+.++.. ....+++.++++..++.++.+ ..+.+||||||||++|||||++
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~--~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~ 150 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK--GQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIH 150 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc--chHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhc
Confidence 99999999987 599999987532 112345566666666655443 3557999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~ 410 (426)
+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 151 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 151 RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999999873 3689999999999875 79999999999999988754
No 185
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-48 Score=365.68 Aligned_cols=215 Identities=30% Similarity=0.422 Sum_probs=178.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC------CCHHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN------IRLDS 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~------~~~~~ 260 (426)
.|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 3789999999975 359999999999999999999999999999999999999999999999998731 12345
Q ss_pred HhcceEEEecCCCCCcc-cHHHHHcCCC-CCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 261 LRRHVGLVSQDITLFSG-TVAENIGYRD-LMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~-ti~eni~~~~-~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
++++++|+||++.+|+. |++||+.+.. ....... +++.+.++..++ +..++..+.+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRL-----------KPYADRFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHH
Confidence 67889999999999865 9999996421 1111111 223334444444 44444556799999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
|++||||++.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 99999999999999999999999999999999999998754 789999999999985 6999999999999999998776
Q ss_pred cc
Q 014366 413 GS 414 (426)
Q Consensus 413 ~~ 414 (426)
..
T Consensus 229 ~~ 230 (242)
T PRK11124 229 TQ 230 (242)
T ss_pred cC
Confidence 53
No 186
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-48 Score=369.00 Aligned_cols=221 Identities=30% Similarity=0.443 Sum_probs=182.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CC---CccEEEEcCEeCCCC--CHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DP---LSGCILVDDHDVQNI--RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~--~p---~~G~I~~~g~~i~~~--~~~ 259 (426)
.|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|++ +| ++|+|.++|+++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999975 35999999999999999999999999999999999995 36 599999999998643 334
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+++.++|+||++.+|+.|++||+.++...... . ++++.++++.+++.+.+ .+..+..+.+|||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-------KDRLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-------HHHHhcCcccCCHHHHH
Confidence 567889999999999989999999864211111 1 12334445555543222 22345567899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++||||++.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .|||+++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998866689999999999875 79999999999999999988776
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
+++
T Consensus 236 ~~~ 238 (252)
T PRK14239 236 MNP 238 (252)
T ss_pred hCC
Confidence 553
No 187
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.2e-47 Score=368.57 Aligned_cols=233 Identities=26% Similarity=0.396 Sum_probs=197.4
Q ss_pred HHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 160 ERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 160 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.+.+++..+++... ..+.......|+++|+++. + +++|+++||+|++||+++|+||||||||||+++|+|++
T Consensus 15 ~~~~~~~~~~~~~~~---~~~~~~~~~~l~i~nls~~--~--~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 15 EGFGELLEKAKQENN---DRKHSSDDNNLFFSNLCLV--G--APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred HHHHHHHhccccccc---ccccCCCCCeEEEEEEEEe--c--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345566654443221 2222334457999999985 2 35999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc
Q 014366 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (426)
Q Consensus 240 ~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 319 (426)
+|++|+|.++| .++|++|++.+|+.|++||+.++... ...+....++.+++.+.+..+|.++++
T Consensus 88 ~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~~---~~~~~~~~l~~~~l~~~l~~~~~~~~~ 151 (282)
T cd03291 88 EPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVSY---DEYRYKSVVKACQLEEDITKFPEKDNT 151 (282)
T ss_pred CCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhccccc---CHHHHHHHHHHhCCHHHHHhccccccc
Confidence 99999999988 39999999999989999999875421 233455667778888999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHH-HHHcCCceEEEeccChHHHHhcCEEEEE
Q 014366 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV-DRLLGHHTVLVIAHHLETVMMAKRVFLL 398 (426)
Q Consensus 320 ~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~~~~~~~~D~i~vl 398 (426)
.+++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.+ +++.++.|+|++||+++.+..||++++|
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l 231 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 231 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999998754 5555578999999999998899999999
Q ss_pred eCCEEEEeccccccccC
Q 014366 399 DNGKLEELNRSTLLGSN 415 (426)
Q Consensus 399 ~~G~i~e~g~~~~l~~~ 415 (426)
++|++++.|+++++.++
T Consensus 232 ~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 232 HEGSSYFYGTFSELQSL 248 (282)
T ss_pred ECCEEEEECCHHHHHhc
Confidence 99999999998777654
No 188
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-48 Score=368.41 Aligned_cols=223 Identities=27% Similarity=0.437 Sum_probs=185.3
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC--C---CccEEEEcCEeCCCC--CH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--P---LSGCILVDDHDVQNI--RL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~--p---~~G~I~~~g~~i~~~--~~ 258 (426)
+.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++... +.
T Consensus 3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 46999999999975 359999999999999999999999999999999999986 4 689999999998643 33
Q ss_pred HHHhcceEEEecCCCCCc-ccHHHHHcCCCCCCC-CC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 259 DSLRRHVGLVSQDITLFS-GTVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
..+++.++|+||++.+|+ .|++||+.++..... .+ ++++.++++.+++.+++. ...+..+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSGGQ 153 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCHHH
Confidence 456888999999999987 599999976421111 11 123445555555543322 12344678999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
|||++||||++.+|++|||||||++||+.+++.+.+.|+++.++.|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999876789999999999885 799999999999999999887
Q ss_pred cccCcc
Q 014366 412 LGSNHD 417 (426)
Q Consensus 412 l~~~~~ 417 (426)
+..++.
T Consensus 234 ~~~~~~ 239 (252)
T PRK14256 234 IFTTPE 239 (252)
T ss_pred HHhCCC
Confidence 766543
No 189
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-48 Score=382.50 Aligned_cols=222 Identities=23% Similarity=0.298 Sum_probs=180.7
Q ss_pred cEEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC----CCccEEEEcCEeCCCCCHHH
Q 014366 187 DVKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD----PLSGCILVDDHDVQNIRLDS 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~----p~~G~I~~~g~~i~~~~~~~ 260 (426)
.|+++|++++|+... ..+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++..++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 379999999997532 359999999999999999999999999999999999997 48999999999998887655
Q ss_pred Hh----cceEEEecCCC--CCc-ccHHHHHcCC----CCC-CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCC
Q 014366 261 LR----RHVGLVSQDIT--LFS-GTVAENIGYR----DLM-TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSL 328 (426)
Q Consensus 261 ~r----~~i~~v~Q~~~--lf~-~ti~eni~~~----~~~-~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~L 328 (426)
++ +.++||||++. +++ .|+.+++... ... .....+++.++++.+++.+.. ..++..+.+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhC
Confidence 43 36999999985 444 3777665321 100 011123455666666664211 1234466899
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEE
Q 014366 329 SGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405 (426)
Q Consensus 329 SgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e 405 (426)
|||||||++|||||+.+|++||+||||++||+.++..+++.|+++.+ +.|+|+|||+++.+. .||||++|++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999853 689999999999985 799999999999999
Q ss_pred eccccccccCc
Q 014366 406 LNRSTLLGSNH 416 (426)
Q Consensus 406 ~g~~~~l~~~~ 416 (426)
.|+++++.+++
T Consensus 235 ~g~~~~~~~~p 245 (326)
T PRK11022 235 TGKAHDIFRAP 245 (326)
T ss_pred ECCHHHHhhCC
Confidence 99988877654
No 190
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-48 Score=365.73 Aligned_cols=220 Identities=26% Similarity=0.464 Sum_probs=182.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i 265 (426)
.++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 4889999999975 36999999999999999999999999999999999999999999999999987766543 46789
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCCC-CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLMT-KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
+|+||++.+|+ .|++||+.+..... ..+.++.. ..+.++++.+ |++........+||||||||++||||++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 99999999887 49999998653211 11111111 1122334333 4444455667899999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
.+|++|||||||++||+.+++.+.+.++++. .++|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 9999999999999999999999999998875 4789999999998775 7999999999999999998876544
No 191
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-48 Score=359.22 Aligned_cols=203 Identities=25% Similarity=0.458 Sum_probs=171.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 478999999975 359999999999999999999999999999999999999999999999987742 45778999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||++.+|+. |++||+.+.......+ .+++.+.++..++.+ .......+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE-----------YANKRVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChH-----------HHhCcHhhCCHHHHHHHHHHHHH
Confidence 9999998875 9999997642111111 223344444444444 33445689999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999875 4689999999999885 69999999999998764
No 192
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-47 Score=370.86 Aligned_cols=222 Identities=32% Similarity=0.465 Sum_probs=186.1
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~--~~~ 258 (426)
+.|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 24 ~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 24 TALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred cEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 46999999999975 3599999999999999999999999999999999999984 89999999999864 234
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
..+|+.++|+||++.+|+.|++||+.++...... . .+++.++++.+++.+.+. +..+..+.+||||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGGQQ 174 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHHHH
Confidence 5678899999999999988999999864221111 1 123445555555543222 234567789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
||++||||++++|+++||||||++||+.+++.+.+.|+++.++.|+|++||+++.+. .|||+++|++|++++.|+++++
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 999999999999999999999999999999999999999876789999999999875 7999999999999999998877
Q ss_pred ccCc
Q 014366 413 GSNH 416 (426)
Q Consensus 413 ~~~~ 416 (426)
..++
T Consensus 255 ~~~~ 258 (272)
T PRK14236 255 FTSP 258 (272)
T ss_pred hcCC
Confidence 6543
No 193
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=5.9e-48 Score=359.61 Aligned_cols=203 Identities=35% Similarity=0.528 Sum_probs=170.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC--CCHHHHhcce
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN--IRLDSLRRHV 265 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~--~~~~~~r~~i 265 (426)
|+++|++++|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+++.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 468999999975 359999999999999999999999999999999999999999999999998853 2345667889
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCC-CCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDL-MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~-~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
+|+||++.+|+ .|++||+.++.. ....+. +++.++++..++.+.+ .....+||||||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKA-----------DAYPAQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hhCccccCHHHHHHHHHH
Confidence 99999999886 599999976421 111222 2334444444544443 445579999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCEE
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i 403 (426)
||++.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998854 689999999999985 7999999999974
No 194
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.6e-47 Score=358.19 Aligned_cols=210 Identities=29% Similarity=0.444 Sum_probs=185.5
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH----HHHhcc
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL----DSLRRH 264 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~----~~~r~~ 264 (426)
.+.|++|+|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 578999999865 469999999999999999999999999999999999999999999999998765432 234677
Q ss_pred eEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 265 i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
++|++|++.+|+.|++||+.+... .+.++..++++..++.+.++.+|.|+++.++..+.+||||||||++||||++.
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSP---FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCc---CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 999999999998899999987642 23455667788889888899999999999999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHH--HHHHHcC-CceEEEeccChHHHHhcCEEEEEeCCE
Q 014366 345 NSSVLILDEATSALDSRSELLVRQ--AVDRLLG-HHTVLVIAHHLETVMMAKRVFLLDNGK 402 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~--~l~~~~~-~~tvi~itH~~~~~~~~D~i~vl~~G~ 402 (426)
+|+++||||||++||+.+++.+.+ .++.+.+ +.|+|++||+++.+..||++++|++|.
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999999988 5555543 689999999999988899999999884
No 195
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-48 Score=367.40 Aligned_cols=220 Identities=33% Similarity=0.473 Sum_probs=184.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCC-CCCHHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQ-NIRLDS 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~-~~~~~~ 260 (426)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4889999999975 3599999999999999999999999999999999999986 5999999999885 344556
Q ss_pred HhcceEEEecCCCCCcccHHHHHcCCCCCCCCC-----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTKID-----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
+++.++|+||++.+|+.|++||+.++....... .+++.++++..++.+.+ .+.++..+.+||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHHH
Confidence 788899999999999899999998753211111 12233444444443322 233455678999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
++||||++.+|+++||||||++||+.+...+.+.|+++.++.|+|++||+++.+. .|||+++|++|++++.|+++.+.+
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 9999999999999999999999999999999999999876789999999999886 699999999999999999877654
Q ss_pred C
Q 014366 415 N 415 (426)
Q Consensus 415 ~ 415 (426)
+
T Consensus 234 ~ 234 (249)
T PRK14253 234 N 234 (249)
T ss_pred C
Confidence 4
No 196
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-48 Score=350.51 Aligned_cols=222 Identities=29% Similarity=0.437 Sum_probs=191.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i 265 (426)
.++++||+..|+.. ++|++|||++++||+++|+|+||+|||||+|+|+|+.+|.+|+|.++|+|++..++.+. |..|
T Consensus 3 mL~v~~l~~~YG~~--~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccce--eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 48899999999863 69999999999999999999999999999999999999999999999999999987654 6679
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
+||||...+|+. ||+||+.++..... .++. ....+++..+.+| -+....+.++.+|||||+|.+||||||+.
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~-~~~~-----~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARR-DKEA-----QERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhccc-cccc-----ccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 999999999965 99999998643211 1000 1111334455556 46667778899999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccccCcc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
+|++|+|||||.||-|.-.++|.+.++++++ +.||++|-++...+ +.+||.|||++|+|+..|+.++|.++++
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 9999999999999999999999999999974 46999999999876 5899999999999999999999988764
No 197
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-47 Score=369.42 Aligned_cols=221 Identities=28% Similarity=0.413 Sum_probs=182.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCCC--CHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNI--RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~~--~~~ 259 (426)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++... +..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5999999999975 359999999999999999999999999999999999864 7999999999998642 334
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+++.++|+||++.+|+.|++||+.++...... . ++.+.++++..++.+. +....+..+.+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDE-------VKDRLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcc-------hHHHHhcCcccCCHHHHH
Confidence 567889999999999988999999864211111 1 1223444444444211 112345567899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|||++||+++.+. .|||+++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999866789999999999875 79999999999999999988776
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
+++
T Consensus 252 ~~~ 254 (268)
T PRK14248 252 TSP 254 (268)
T ss_pred hCC
Confidence 553
No 198
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-48 Score=384.34 Aligned_cols=217 Identities=26% Similarity=0.407 Sum_probs=184.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHHhc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDSLRR 263 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~----~~~~r~ 263 (426)
|++ |++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ....++
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 667 999999752 23 899999999999999999999999999999999999999999999986431 334577
Q ss_pred ceEEEecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 264 HVGLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 264 ~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+++|+||++.+|+ .|++||+.++.. ....+++.++++..++.++.++ .+.+||||||||++|||||
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~--~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qRvalaraL 143 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMA--KSMVAQFDKIVALLGIEPLLDR-----------YPGSLSGGEKQRVAIGRAL 143 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhh--hhhHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHHHH
Confidence 8999999999996 599999988642 2234556667777766655544 4579999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcchh
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDSL 419 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~l 419 (426)
+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||++++|++|++++.|+++++.+++...
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~~ 223 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAMR 223 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcchh
Confidence 999999999999999999999999999998753 689999999999875 79999999999999999999888776544
Q ss_pred hhc
Q 014366 420 VSA 422 (426)
Q Consensus 420 ~~~ 422 (426)
+.+
T Consensus 224 ~~~ 226 (352)
T PRK11144 224 PWL 226 (352)
T ss_pred hhh
Confidence 433
No 199
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-47 Score=369.66 Aligned_cols=221 Identities=29% Similarity=0.440 Sum_probs=186.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~--~~~~ 259 (426)
.|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECCE--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 59999999999753 59999999999999999999999999999999999986 489999999998853 3445
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCC---CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI---DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
.+++.++|++|++.+|+.|++||+.++...... ..+++.++++.+++.+++. ...+..+.+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHHH
Confidence 678889999999999888999999875321111 1233445556666654432 223556789999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEe---------CCEEEEe
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLD---------NGKLEEL 406 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~---------~G~i~e~ 406 (426)
+|||||+++|++|||||||++||+.+++.+.+.|+++.+++|||++||+++.+. .|||+++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 999999999999999999999999999999999999876689999999999885 799999998 8999999
Q ss_pred ccccccccCc
Q 014366 407 NRSTLLGSNH 416 (426)
Q Consensus 407 g~~~~l~~~~ 416 (426)
|+++++.+++
T Consensus 241 ~~~~~~~~~~ 250 (264)
T PRK14243 241 DRTEKIFNSP 250 (264)
T ss_pred CCHHHHHhCC
Confidence 9998886554
No 200
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-48 Score=367.32 Aligned_cols=221 Identities=30% Similarity=0.425 Sum_probs=182.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~--~~~~ 259 (426)
.|+++|++|+|++ .++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999975 369999999999999999999999999999999999997 479999999998854 2334
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+++.++|++|++.+|+.|++||+.++...... . .+++.++++..++.+. .....+..+.+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKE-------TKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcc-------hHHHhccChhhCCHHHHH
Confidence 567889999999999989999999864321111 1 1233344444444211 012234567899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++||||++++|+++||||||++||+.+++.+.+.|+++.++.|+|++||+++.+. .||||++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999866789999999999875 69999999999999999988776
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
.++
T Consensus 235 ~~~ 237 (251)
T PRK14251 235 IAP 237 (251)
T ss_pred hCC
Confidence 543
No 201
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=9.1e-48 Score=370.39 Aligned_cols=218 Identities=33% Similarity=0.435 Sum_probs=179.8
Q ss_pred cEEEEeEEEEeCCC-------CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH
Q 014366 187 DVKFCNISFKYADN-------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~-------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~ 259 (426)
.|+++||+|+|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999631 24699999999999999999999999999999999999999999999999998876554
Q ss_pred H---HhcceEEEecCCC--CCc-ccHHHHHcCCCC-CCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCC
Q 014366 260 S---LRRHVGLVSQDIT--LFS-GTVAENIGYRDL-MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSL 328 (426)
Q Consensus 260 ~---~r~~i~~v~Q~~~--lf~-~ti~eni~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~L 328 (426)
+ +++.++|+||++. +++ .|++||+.+... ..... .+++.++++..++. +...+.++.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----------~~~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLR----------SEDADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC----------hhhhhCChhhC
Confidence 3 5678999999983 443 599999964311 00111 12333444444332 12345567899
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEE
Q 014366 329 SGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405 (426)
Q Consensus 329 SgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e 405 (426)
|||||||++||||++.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999998753 689999999999986 799999999999999
Q ss_pred ecccccccc
Q 014366 406 LNRSTLLGS 414 (426)
Q Consensus 406 ~g~~~~l~~ 414 (426)
.|+++++.+
T Consensus 232 ~g~~~~~~~ 240 (265)
T TIGR02769 232 ECDVAQLLS 240 (265)
T ss_pred ECCHHHHcC
Confidence 999987765
No 202
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=9.5e-48 Score=361.54 Aligned_cols=213 Identities=29% Similarity=0.426 Sum_probs=179.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999975 35999999999999999999999999999999999999999999999999998777777788999
Q ss_pred EEecCCCCCcccHHHHHcCCCCCCC--CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 267 LVSQDITLFSGTVAENIGYRDLMTK--IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
|+||++.+|+.|++||+.+...... ...+++.+.++..++. ++..+..+.+||||||||++|||||++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----------DTILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----------hHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999998899999976421111 1122333444444432 133455678999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHHhcCEEEEEe-CCEEEEeccccc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLD-NGKLEELNRSTL 411 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~-~G~i~e~g~~~~ 411 (426)
+|+++||||||++||+.+.+.+.+.|+++. .+.|+|++||+++.+..||++++|+ ++..+++|++++
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~~ 224 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYEL 224 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhcc
Confidence 999999999999999999999999999874 2689999999999988899999995 566677887763
No 203
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.1e-47 Score=367.94 Aligned_cols=214 Identities=28% Similarity=0.412 Sum_probs=183.1
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 689999999975 369999999999999999999999999999999999999999999999999988777777788999
Q ss_pred EecCCCCC-cccHHHHHcCCCCCC------C--CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 268 VSQDITLF-SGTVAENIGYRDLMT------K--IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 268 v~Q~~~lf-~~ti~eni~~~~~~~------~--~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
++|++.++ ..|++||+.++.... . ...+++.++++.+++.+.. ...+.+||||||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA-----------DRDMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHHH
Confidence 99998754 579999998753100 0 1122345555555554443 34567999999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||++.+|+++||||||++||+.+.+.+.+.|+++.+ +.|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999998853 689999999999995 799999999999999999877654
No 204
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-47 Score=366.25 Aligned_cols=221 Identities=30% Similarity=0.445 Sum_probs=184.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCC--CHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNI--RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~~--~~~ 259 (426)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999975 3599999999999999999999999999999999999875 799999999998643 234
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
..++.++|+||++.+|+.|++||+.++...... + .+++.++++.+++.+.+ ....+.++..|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV-------KDDLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHHH
Confidence 567889999999999999999999875321111 1 12344555555543222 12334567899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++||||++.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .|||+++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999999999999999999999999998866689999999999875 69999999999999999988776
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
.++
T Consensus 235 ~~~ 237 (251)
T PRK14270 235 LEP 237 (251)
T ss_pred cCC
Confidence 543
No 205
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-48 Score=369.01 Aligned_cols=221 Identities=29% Similarity=0.455 Sum_probs=183.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCCCC--HHH
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNIR--LDS 260 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~~~--~~~ 260 (426)
-+++|++|+|++ +++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 468999999974 369999999999999999999999999999999999986 47999999999886543 235
Q ss_pred HhcceEEEecCCCCCcccHHHHHcCCCCCCCC--C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMTKI--D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~--~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
+++.++|+||++.+|+.|++||+.++....+. . ++++.++++..++.+++ .+.++..+.+|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHHH
Confidence 67889999999999988999999864211111 1 12334455555543321 12345567899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++||||++++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .|||+++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999998876789999999999986 69999999999999999988776
Q ss_pred cCcc
Q 014366 414 SNHD 417 (426)
Q Consensus 414 ~~~~ 417 (426)
+++.
T Consensus 237 ~~~~ 240 (251)
T PRK14244 237 KNPQ 240 (251)
T ss_pred cCCC
Confidence 6543
No 206
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-48 Score=365.20 Aligned_cols=220 Identities=28% Similarity=0.477 Sum_probs=194.3
Q ss_pred cEEEEeEEEEeCCCC----------------------CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc
Q 014366 187 DVKFCNISFKYADNM----------------------PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG 244 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~----------------------~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G 244 (426)
.|+++||++-|+.+. ..-++|+||+|+.||+..|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 588889988886531 1247899999999999999999999999999999999999999
Q ss_pred EEEEcCEeCCCCCHHHHh----cceEEEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCC
Q 014366 245 CILVDDHDVQNIRLDSLR----RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQ 315 (426)
Q Consensus 245 ~I~~~g~~i~~~~~~~~r----~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~ 315 (426)
+|+++|.|+..++.+++| +++++|||...||+. ||.||+.||....+.+. ++..++++.++++.|-++.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999887653 579999999999975 99999999876555443 34567788888888888877
Q ss_pred CcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHH-Hhc
Q 014366 316 GYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETV-MMA 392 (426)
Q Consensus 316 g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~ 392 (426)
.+|||||||||.|||||..+|+||++|||+|+|||--+.++++.|.++.+ .+||++||||++++ +..
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 69999999999999999999999999999999999999999999988753 68999999999876 689
Q ss_pred CEEEEEeCCEEEEeccccccccCcc
Q 014366 393 KRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 393 D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
|||..|++|+|++.|+|+++..++.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PA 257 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPA 257 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCcc
Confidence 9999999999999999999888764
No 207
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.3e-47 Score=346.19 Aligned_cols=172 Identities=47% Similarity=0.747 Sum_probs=161.1
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++...++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 47899999997543469999999999999999999999999999999999999999999999999988887788889999
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
++|++.+|+.|++||+ ||||||||++||||++.+|+
T Consensus 81 ~~q~~~~~~~tv~~~l--------------------------------------------LS~G~~qrv~la~al~~~p~ 116 (173)
T cd03246 81 LPQDDELFSGSIAENI--------------------------------------------LSGGQRQRLGLARALYGNPR 116 (173)
T ss_pred ECCCCccccCcHHHHC--------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 9999999988999997 99999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHhcCEEEEEeCCEE
Q 014366 348 VLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMMAKRVFLLDNGKL 403 (426)
Q Consensus 348 illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~D~i~vl~~G~i 403 (426)
++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 117 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 117 ILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999999999998753 6899999999998888999999999974
No 208
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-47 Score=360.29 Aligned_cols=212 Identities=33% Similarity=0.508 Sum_probs=182.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++||+++|++. ..|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 7899999999742 239999999999999999999999999999999999999999999999876543 2567999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCC----CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFSG-TVAENIGYRDLM----TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||++.+|+. |+.||+.++... ....++++.++++.+++.+++++.| ..||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999875 999999864211 1112345667777777777666654 68999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
+++|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++.++.
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 999999999999999999999999999998743 689999999999885 69999999999999999988776554
No 209
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.3e-47 Score=379.33 Aligned_cols=222 Identities=23% Similarity=0.345 Sum_probs=181.4
Q ss_pred cEEEEeEEEEeCC--CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCCHHHH
Q 014366 187 DVKFCNISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIRLDSL 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~--~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~I~~~g~~i~~~~~~~~ 261 (426)
.|+++|++++|+. +...+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5899999999963 2235999999999999999999999999999999999999996 9999999999988876654
Q ss_pred h----cceEEEecCC--CCCc-ccHHHHHcCCCC-CCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCC
Q 014366 262 R----RHVGLVSQDI--TLFS-GTVAENIGYRDL-MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329 (426)
Q Consensus 262 r----~~i~~v~Q~~--~lf~-~ti~eni~~~~~-~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LS 329 (426)
+ +.|+||||++ .+++ .|+.+|+..... ....+. +++.+.++.+++ |++. ..++..+.+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCcccCC
Confidence 3 4799999998 4555 488888753211 011122 223333444333 2221 23456778999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEe
Q 014366 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEEL 406 (426)
Q Consensus 330 gGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~ 406 (426)
||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+||||++.+. .||||++|++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998854 689999999999986 7999999999999999
Q ss_pred ccccccccCc
Q 014366 407 NRSTLLGSNH 416 (426)
Q Consensus 407 g~~~~l~~~~ 416 (426)
|+++++.+++
T Consensus 244 g~~~~i~~~p 253 (330)
T PRK09473 244 GNARDVFYQP 253 (330)
T ss_pred CCHHHHHhCC
Confidence 9998887654
No 210
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.1e-47 Score=384.47 Aligned_cols=212 Identities=27% Similarity=0.411 Sum_probs=176.8
Q ss_pred eEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCE----eCCCCCHHHH---h-c
Q 014366 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH----DVQNIRLDSL---R-R 263 (426)
Q Consensus 192 ~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~----~i~~~~~~~~---r-~ 263 (426)
++.++|+. ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+ ++...+...+ | +
T Consensus 29 ~~~~~~g~--~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~ 106 (382)
T TIGR03415 29 EILDETGL--VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTH 106 (382)
T ss_pred HHHHhhCC--EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcC
Confidence 34455543 35899999999999999999999999999999999999999999999997 5655555443 3 5
Q ss_pred ceEEEecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 264 HVGLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 264 ~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
+++||||++.+|+ .|++||+.++......+ .++..++++.+++.++.+. .+.+||||||||++|
T Consensus 107 ~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~-----------~~~~LSgGq~QRV~L 175 (382)
T TIGR03415 107 RVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK-----------KPGELSGGMQQRVGL 175 (382)
T ss_pred CEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHH
Confidence 7999999999997 59999998763221122 2344556666666555544 447899999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccccC
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||||+.+|++||||||||+||+.++..+++.|.++.+ ++|+|+|||+++.+ +.||||++|++|++++.|+++++..+
T Consensus 176 ARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 176 ARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999999999999999998753 68999999999987 57999999999999999999887655
Q ss_pred c
Q 014366 416 H 416 (426)
Q Consensus 416 ~ 416 (426)
+
T Consensus 256 p 256 (382)
T TIGR03415 256 P 256 (382)
T ss_pred c
Confidence 3
No 211
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-47 Score=366.24 Aligned_cols=221 Identities=28% Similarity=0.440 Sum_probs=183.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCC--CHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNI--RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~~--~~~ 259 (426)
.|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999975 3699999999999999999999999999999999999984 899999999988643 234
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+++.++|+||++.+|+.|++||+.++...... . ++++.++++..++.+.+ ++..+.++.+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHHH
Confidence 567889999999999989999999864211111 1 12234445555543322 12345577899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++||||++.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999999876789999999999775 79999999999999999988776
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
+++
T Consensus 234 ~~~ 236 (250)
T PRK14262 234 ERP 236 (250)
T ss_pred hCC
Confidence 543
No 212
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-47 Score=365.01 Aligned_cols=221 Identities=29% Similarity=0.427 Sum_probs=184.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCC--CHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNI--RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~~--~~~ 259 (426)
.|+++|++|+|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 5899999999975 3599999999999999999999999999999999999763 489999999998765 345
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
..++.++|++|++.+|+.|++||+.++....+. + ++.+.++++.+++.+. +.+.++..+.+|||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE-------VKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh-------hHHHhhcChhhCCHHHHH
Confidence 667889999999999988999999875321111 1 1223344444444322 223456678899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 99999999999999999999999999999999999999876789999999999985 79999999999999999988776
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
.++
T Consensus 237 ~~~ 239 (253)
T PRK14261 237 ENP 239 (253)
T ss_pred hCC
Confidence 543
No 213
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=7.6e-48 Score=377.57 Aligned_cols=206 Identities=29% Similarity=0.426 Sum_probs=173.8
Q ss_pred EEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCC
Q 014366 195 FKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL 274 (426)
Q Consensus 195 ~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~l 274 (426)
++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....++++++|+||++.+
T Consensus 1 k~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~ 77 (302)
T TIGR01188 1 KVYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASV 77 (302)
T ss_pred CeeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCC
Confidence 35654 359999999999999999999999999999999999999999999999999865 345678889999999999
Q ss_pred Ccc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEE
Q 014366 275 FSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVL 349 (426)
Q Consensus 275 f~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~il 349 (426)
|+. |++||+.+.......+ .+++.++++.+++.+.. ..+..+||||||||++|||||+.+|++|
T Consensus 78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~ll 146 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-----------DRPVGTYSGGMRRRLDIAASLIHQPDVL 146 (302)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------CCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 875 9999997642211222 22344555555554433 3456799999999999999999999999
Q ss_pred EeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 350 ILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 350 llDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
||||||+|||+.+++.+.+.|+++. +++|||++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 147 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 147 FLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999999999885 4689999999999986 799999999999999999876643
No 214
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-47 Score=369.93 Aligned_cols=221 Identities=29% Similarity=0.476 Sum_probs=183.4
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCC--CCH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQN--IRL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~--~~~ 258 (426)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 45999999999975 359999999999999999999999999999999999997 689999999999854 234
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC---CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI---DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
..+++.++|+||++.+|+.|++||+.++...... ..+++.++++..++.+.+. ..++.++.+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHHH
Confidence 5678899999999999888999999764211111 1234455555555432221 23345678999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEE-EEeCCEEEEeccccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVF-LLDNGKLEELNRSTLLG 413 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~-vl~~G~i~e~g~~~~l~ 413 (426)
++|||||+++|++|||||||++||+.+++.+.+.|+++.++.|+|++||+++.+. .|||++ +|++|++++.|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999999866689999999999986 699975 57999999999987765
Q ss_pred cC
Q 014366 414 SN 415 (426)
Q Consensus 414 ~~ 415 (426)
.+
T Consensus 269 ~~ 270 (285)
T PRK14254 269 EN 270 (285)
T ss_pred hC
Confidence 44
No 215
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4.9e-47 Score=353.72 Aligned_cols=204 Identities=33% Similarity=0.547 Sum_probs=175.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
++++||+++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .+++.++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 468999999963 468999999999999999999999999999999999999999999999986543 35778999
Q ss_pred EecCCCCCcc-cHHHHHcCCCC-CC---CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFSG-TVAENIGYRDL-MT---KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~-~~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||++.+|+. |++||+.++.. .. ....+++.++++..++.+..++.| .+||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999864 99999976421 11 112345666777777777666654 68999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~ 408 (426)
+.+|+++||||||++||+.+++.+.+.|+++.+ +.|+|++||+++.+. .||++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998753 689999999999875 799999999999998874
No 216
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-47 Score=379.41 Aligned_cols=222 Identities=21% Similarity=0.281 Sum_probs=180.9
Q ss_pred cEEEEeEEEEeCC--CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC----CCccEEEEcCEeCCCCCHHH
Q 014366 187 DVKFCNISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD----PLSGCILVDDHDVQNIRLDS 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~--~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~----p~~G~I~~~g~~i~~~~~~~ 260 (426)
.|+++|++++|+. +...+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++...+..+
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4899999999953 22359999999999999999999999999999999999986 58999999999998877655
Q ss_pred H----hcceEEEecCCC--CCc-ccHHHHHcCCCC---CC-----C--CCHHHHHHHHHHhchHHHHHhcCCCcccccCC
Q 014366 261 L----RRHVGLVSQDIT--LFS-GTVAENIGYRDL---MT-----K--IDMERVEHTARTANADEFVRTLPQGYNTHIGP 323 (426)
Q Consensus 261 ~----r~~i~~v~Q~~~--lf~-~ti~eni~~~~~---~~-----~--~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~ 323 (426)
+ ++.|+||||++. +++ .|+.+|+..... .. . ...+++.++++.+++.+.. .....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhC
Confidence 4 247999999986 344 489999863110 00 0 0123455566666664211 11233
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeC
Q 014366 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDN 400 (426)
Q Consensus 324 ~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~ 400 (426)
.+.+||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||||++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999999853 689999999999995 7999999999
Q ss_pred CEEEEeccccccccCc
Q 014366 401 GKLEELNRSTLLGSNH 416 (426)
Q Consensus 401 G~i~e~g~~~~l~~~~ 416 (426)
|+|+|.|+++++.+++
T Consensus 235 G~ive~g~~~~i~~~p 250 (330)
T PRK15093 235 GQTVETAPSKELVTTP 250 (330)
T ss_pred CEEEEECCHHHHHhCC
Confidence 9999999988776543
No 217
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-47 Score=366.99 Aligned_cols=222 Identities=29% Similarity=0.450 Sum_probs=185.2
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~--~~~ 258 (426)
..|+++|++++|++ .++++|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|+++.. ...
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 36999999999975 3599999999999999999999999999999999999985 48999999998854 334
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCC-CC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
..+++.++|+||++.+|+.|++||+.++..... .+ .+.+.++++.+++.+.+. ...+..+.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK-------DKLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHH
Confidence 567788999999999999999999976421111 11 223445566666543332 223456789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEe-----CCEEEEec
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLD-----NGKLEELN 407 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~-----~G~i~e~g 407 (426)
||++|||||+++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 999999999999999999999999999999999999999876789999999999985 799999998 59999999
Q ss_pred cccccccCc
Q 014366 408 RSTLLGSNH 416 (426)
Q Consensus 408 ~~~~l~~~~ 416 (426)
+++++.+++
T Consensus 237 ~~~~~~~~~ 245 (259)
T PRK14260 237 VTTQIFSNP 245 (259)
T ss_pred CHHHHhcCC
Confidence 998776543
No 218
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-48 Score=355.35 Aligned_cols=227 Identities=27% Similarity=0.432 Sum_probs=190.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i 265 (426)
-+++++++++|++- .+++||||++++||+++|+|||||||||++++|+|+|+|++|+|.++|+++..+++.+. |..|
T Consensus 4 lL~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 4 LLEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 36799999999864 59999999999999999999999999999999999999999999999999999988765 5569
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCC---------CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMT---------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
+.-||.+.+|+. ||.||+..+.... .....+..++.+ ...++++.+ |++...++...+||+||++|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e--~A~~~Le~v--gL~~~a~~~A~~LsyG~qR~ 157 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE--RARELLEFV--GLGELADRPAGNLSYGQQRR 157 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHH--HHHHHHHHc--CCchhhcchhhcCChhHhHH
Confidence 999999999975 9999997652210 000001111111 112233332 66677777889999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
+.|||||+.+|++|+||||.+||.+....++.+.|+++++ +.|+++|-||++.+. .||||+||+.|+++.+|+|++.
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEV 237 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHH
Confidence 9999999999999999999999999999999999999974 489999999999986 7999999999999999999999
Q ss_pred ccCcchh
Q 014366 413 GSNHDSL 419 (426)
Q Consensus 413 ~~~~~~l 419 (426)
.+|+.=.
T Consensus 238 ~~dp~Vi 244 (250)
T COG0411 238 RNNPRVI 244 (250)
T ss_pred hcCHHhH
Confidence 9887543
No 219
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-47 Score=366.74 Aligned_cols=223 Identities=32% Similarity=0.447 Sum_probs=185.7
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CC
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IR 257 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~--~~ 257 (426)
...|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. ..
T Consensus 18 ~~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 18 HSVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred CceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 346999999999975 3599999999999999999999999999999999999863 69999999998854 23
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC---CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 258 LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI---DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 258 ~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
...+++.++|+||++.+|+.|+.||+.++...... .++.+.++++.+++.+.+. ...+..+.+|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHHH
Confidence 34567889999999999988999999875321111 1233444555555543332 2344567899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEe---------CCEEE
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLD---------NGKLE 404 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~---------~G~i~ 404 (426)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|||++||+++.+. .|||+++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 99999999999999999999999999999999999999876789999999999885 799999998 89999
Q ss_pred EeccccccccCc
Q 014366 405 ELNRSTLLGSNH 416 (426)
Q Consensus 405 e~g~~~~l~~~~ 416 (426)
+.|+++++.+++
T Consensus 249 ~~g~~~~~~~~~ 260 (274)
T PRK14265 249 EFSPTEQMFGSP 260 (274)
T ss_pred EeCCHHHHHhCC
Confidence 999998876553
No 220
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-47 Score=360.14 Aligned_cols=214 Identities=34% Similarity=0.522 Sum_probs=181.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 4689999999753 59999999999999999999999999999999999999999999999999876543 3678999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
++|++.+|.+ |++||+.++......+ .+++..+++..++.++++. ...+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANR-----------KPSQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHHH
Confidence 9999999865 9999997642111111 2344555666666655554 4479999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
+.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++...+
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~ 222 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCC
Confidence 999999999999999999999999999998753 789999999999885 69999999999999999877665543
No 221
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.4e-47 Score=366.78 Aligned_cols=218 Identities=25% Similarity=0.366 Sum_probs=180.4
Q ss_pred cEEEEeEEEEeCCC-------CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH
Q 014366 187 DVKFCNISFKYADN-------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~-------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~ 259 (426)
.|+++||+++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 23699999999999999999999999999999999999999999999999998754444
Q ss_pred HHhcceEEEecCCC--CCcc-cHHHHHcCCCCC-CCCC----HHHHHHHHHHhchH-HHHHhcCCCcccccCCCCCCCCh
Q 014366 260 SLRRHVGLVSQDIT--LFSG-TVAENIGYRDLM-TKID----MERVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSG 330 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~--lf~~-ti~eni~~~~~~-~~~~----~~~~~~~~~~~~l~-~~~~~lp~g~~t~~~~~g~~LSg 330 (426)
..++.++|+||++. +++. |+.+|+.+.... .... .+++.++++.+++. +..+ ....+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS-----------YYPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh-----------cCchhcCH
Confidence 55678999999985 4444 899998652111 0111 23455666666662 3332 24479999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 331 GqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
|||||++||||++.+|++|||||||++||+.+++.+.+.|.++.+ +.|||++||+++.+. .||++++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998752 689999999999987 69999999999999999
Q ss_pred cccccccC
Q 014366 408 RSTLLGSN 415 (426)
Q Consensus 408 ~~~~l~~~ 415 (426)
+++++.++
T Consensus 233 ~~~~~~~~ 240 (267)
T PRK15112 233 STADVLAS 240 (267)
T ss_pred CHHHHhcC
Confidence 98877654
No 222
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-47 Score=367.41 Aligned_cols=221 Identities=28% Similarity=0.402 Sum_probs=184.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCCC-HHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNIR-LDS 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~~~-~~~ 260 (426)
.|+++||+++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 5899999999975 3699999999999999999999999999999999999986 7999999999987653 346
Q ss_pred HhcceEEEecCCCCCcccHHHHHcCCCCCC-CCCHHHH----HHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 261 LRRHVGLVSQDITLFSGTVAENIGYRDLMT-KIDMERV----EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~-~~~~~~~----~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
+++.++|+||++.+|+.|++||+.++.... ..+.++. .+.++.+++.++ +.+.++..+.+||||||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA-------VKDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhCCcccCCHHHHHH
Confidence 688899999999999899999998753211 1122222 223333333221 2234456778999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .|||+++|++|++++.|+++++.+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999998866689999999999875 799999999999999999887765
Q ss_pred Cc
Q 014366 415 NH 416 (426)
Q Consensus 415 ~~ 416 (426)
++
T Consensus 252 ~~ 253 (276)
T PRK14271 252 SP 253 (276)
T ss_pred Cc
Confidence 43
No 223
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=6e-47 Score=358.84 Aligned_cols=213 Identities=35% Similarity=0.526 Sum_probs=180.8
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~i~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECCe--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 4789999999753 59999999999999999999999999999999999999999999999999876542 4678999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||++.+|+. |++||+.+.......+ .+++.++++..++.++.+ ....+||+||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-----------RYPNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 9999999975 9999998653211111 223444555555544443 34579999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+++|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++.+.+.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999998753 689999999999875 6999999999999999998877654
No 224
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-48 Score=346.40 Aligned_cols=217 Identities=27% Similarity=0.453 Sum_probs=185.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i 265 (426)
.+..+|+.++|..+ ++++++||++++||+|++.|||||||||.+.++.|+.+|++|+|.+||.|++.++.... |..|
T Consensus 4 ~L~a~~l~K~y~kr--~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 4 TLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEEehhhhHhhCCe--eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 58899999999764 69999999999999999999999999999999999999999999999999999987654 5569
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCCCC------HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTKID------MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
||+||++.+|.. ||+|||.........+ .++++..++..++.+ .-...+.+||||||+|+.|
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~h-----------lr~~~a~sLSGGERRR~EI 150 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH-----------LRDSKAYSLSGGERRRVEI 150 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHH-----------HhcCcccccccchHHHHHH
Confidence 999999999966 9999997532221111 112334444444444 3445678999999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChH-HHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLE-TVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
||||+.+|+.++||||++|+||.+...|++.++.++. +--|++.-|+.. ++..|||.|++.+|++...|+|+++.+++
T Consensus 151 ARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 151 ARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred HHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 9999999999999999999999999999999999874 678999999984 56899999999999999999999998885
No 225
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-47 Score=363.25 Aligned_cols=221 Identities=29% Similarity=0.426 Sum_probs=182.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC--C---CccEEEEcCEeCCC--CCHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--P---LSGCILVDDHDVQN--IRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~--p---~~G~I~~~g~~i~~--~~~~ 259 (426)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 5899999999975 369999999999999999999999999999999999975 5 59999999998854 2334
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+++.++|++|++.+|+.|++||+.++...... . ++++.+.++.+++.+ ++....+..+.+|||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWD-------EVKDHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcc-------chhhHHhcCcccCCHHHHH
Confidence 567889999999999989999999864211111 1 122333344444322 1223345567899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++||||++.+|+++||||||++||+.+++.+.+.|+++.++.|+|++||+++.+. .||+|++|++|++++.|++.++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999999866689999999999985 79999999999999999988776
Q ss_pred cCc
Q 014366 414 SNH 416 (426)
Q Consensus 414 ~~~ 416 (426)
.++
T Consensus 236 ~~~ 238 (252)
T PRK14255 236 LNP 238 (252)
T ss_pred cCC
Confidence 654
No 226
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-47 Score=364.37 Aligned_cols=220 Identities=30% Similarity=0.473 Sum_probs=182.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC--CCHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN--IRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~--~~~~ 259 (426)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 58999999999753 599999999999999999999999999999999999974 79999999998853 3345
Q ss_pred HHhcceEEEecCCCCCc-ccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 260 SLRRHVGLVSQDITLFS-GTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
.+++.++|++|++.+|+ .|++||+.++...... + ++.+.++++..++.+.+ ....+..+.+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHH
Confidence 67888999999999887 5999999764211111 1 12334455555543221 2234456789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEe------CCEEEEe
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLD------NGKLEEL 406 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~------~G~i~e~ 406 (426)
||++||||++.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .|||+++|+ +|++++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 999999999999999999999999999999999999999866689999999999885 799999997 7999999
Q ss_pred ccccccccC
Q 014366 407 NRSTLLGSN 415 (426)
Q Consensus 407 g~~~~l~~~ 415 (426)
|+++++..+
T Consensus 235 ~~~~~~~~~ 243 (258)
T PRK14241 235 DDTEKIFSN 243 (258)
T ss_pred CCHHHHHhC
Confidence 998876544
No 227
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.5e-47 Score=361.47 Aligned_cols=214 Identities=25% Similarity=0.345 Sum_probs=174.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCccEEEEcCEeCCCCCHHHH-hcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVDDHDVQNIRLDSL-RRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~--~p~~G~I~~~g~~i~~~~~~~~-r~~ 264 (426)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+.... +..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 478999999975 35999999999999999999999999999999999994 7999999999999887766554 445
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCC-CC------CC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCC-CCChH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLM-TK------ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGS-SLSGG 331 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~-~~------~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~-~LSgG 331 (426)
++|++|++.+|+. |++||+.+.... .. .+ .+++.++++..++.+ ...+.... +||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LS~G 148 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDE----------EFLNRSVNEGFSGG 148 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCch----------hhcccccccCcCHH
Confidence 9999999999875 999999653210 00 11 122333444444321 12233344 59999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-h-cCEEEEEeCCEEEEecc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-M-AKRVFLLDNGKLEELNR 408 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~-~D~i~vl~~G~i~e~g~ 408 (426)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|||++||+++.+. . ||++++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999999885 4689999999999986 4 89999999999999998
Q ss_pred ccccc
Q 014366 409 STLLG 413 (426)
Q Consensus 409 ~~~l~ 413 (426)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 87554
No 228
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-47 Score=361.39 Aligned_cols=205 Identities=29% Similarity=0.433 Sum_probs=172.8
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999975 3599999999999999999999999999999999999999999999999987642 245899
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
++|++.+|+ .|++||+.++....... .+++.++++..++.+.. ...+.+||||||||++|||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAE-----------KRYIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 999999886 59999998642211111 22344555555554443 345679999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEe--CCEEEEecccc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLD--NGKLEELNRST 410 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~--~G~i~e~g~~~ 410 (426)
+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||++++|+ +|++++.++.+
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999999999873 3789999999999885 799999998 59999987643
No 229
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-47 Score=368.81 Aligned_cols=222 Identities=30% Similarity=0.448 Sum_probs=183.2
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCCC--CH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNI--RL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~~--~~ 258 (426)
..|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++... +.
T Consensus 38 ~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 38 PHVVAKNFSIYYGEF--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred eEEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 359999999999753 59999999999999999999999999999999999864 4999999999988643 23
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
..+|+.++|++|++.+|+.|++||+.++...... + .+++.++++..++.+.+ ....+..+..||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-------SDRLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch-------hhHhhCChhhCCHHHH
Confidence 3567889999999999988999999875321111 1 12333444444442211 1233456789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|||++||+++.+. .|||+++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999876789999999999985 7999999999999999998877
Q ss_pred ccCc
Q 014366 413 GSNH 416 (426)
Q Consensus 413 ~~~~ 416 (426)
.+++
T Consensus 269 ~~~~ 272 (286)
T PRK14275 269 FTNP 272 (286)
T ss_pred HhCC
Confidence 6543
No 230
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-47 Score=362.26 Aligned_cols=220 Identities=30% Similarity=0.454 Sum_probs=185.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCCC--CHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNI--RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~~--~~~ 259 (426)
.++++||+++|++ +++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++... +..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 4789999999975 359999999999999999999999999999999999864 4899999999998653 345
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCC-CC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-ID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+++.++|+||++.+|+.|++||+.++....+ .+ .+++.++++.+++.+++.. .++..+.+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHHH
Confidence 67889999999999998899999986532111 11 2334556666666554432 234567899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|++||||++++|++|||||||++||+.++..+.+.|+++.++.|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999876789999999999886 69999999999999999988776
Q ss_pred cC
Q 014366 414 SN 415 (426)
Q Consensus 414 ~~ 415 (426)
.+
T Consensus 234 ~~ 235 (250)
T PRK14266 234 IN 235 (250)
T ss_pred hC
Confidence 54
No 231
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-47 Score=362.48 Aligned_cols=221 Identities=30% Similarity=0.436 Sum_probs=180.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----ccEEEEcCEeCCC--CCHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCILVDDHDVQN--IRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~-----~G~I~~~g~~i~~--~~~~ 259 (426)
.++++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 4889999999975 36999999999999999999999999999999999999874 8999999999864 2344
Q ss_pred HHhcceEEEecCCCCCcc-cHHHHHcCCCCCCCC-CHHHH----HHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKI-DMERV----EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~-~~~~~----~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
.+++.++|++|++.+|+. |++||+.++...... ..++. .+.++..++.+. +....+..+.+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE-------VKDRLKTPATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh-------hhhhhcCCcccCCHHHH
Confidence 667889999999998874 999999764211111 12222 222233332221 11223456789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
||++||||++++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .|||+++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999876789999999999886 6999999999999999998877
Q ss_pred ccCc
Q 014366 413 GSNH 416 (426)
Q Consensus 413 ~~~~ 416 (426)
..++
T Consensus 235 ~~~~ 238 (252)
T PRK14272 235 FTNP 238 (252)
T ss_pred HhCc
Confidence 6553
No 232
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=7e-47 Score=362.84 Aligned_cols=221 Identities=22% Similarity=0.345 Sum_probs=180.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEe-----CCCCCHHH-
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD-----VQNIRLDS- 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~-----i~~~~~~~- 260 (426)
.|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|++ +...+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 4899999999975 359999999999999999999999999999999999999999999999998 76665543
Q ss_pred ---HhcceEEEecCCC--CCc-ccHHHHHcCCCC-CCCCCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHH
Q 014366 261 ---LRRHVGLVSQDIT--LFS-GTVAENIGYRDL-MTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQ 332 (426)
Q Consensus 261 ---~r~~i~~v~Q~~~--lf~-~ti~eni~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGq 332 (426)
+++.++|+||++. ++. .|+.+|+.+... ....+..+... ...++++.+ |++ +.++..+.+|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGGM 156 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHHH
Confidence 3567999999984 443 488999864210 00011111111 123445544 333 35567789999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccc
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~ 409 (426)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||+++.+. .||++++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999998753 689999999999996 7999999999999999998
Q ss_pred cccccCc
Q 014366 410 TLLGSNH 416 (426)
Q Consensus 410 ~~l~~~~ 416 (426)
+++.+++
T Consensus 237 ~~~~~~~ 243 (258)
T PRK11701 237 DQVLDDP 243 (258)
T ss_pred HHHhcCC
Confidence 8776554
No 233
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=8.1e-47 Score=363.18 Aligned_cols=213 Identities=30% Similarity=0.386 Sum_probs=179.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCC-----CH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNI-----RL 258 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~I~~~g~~i~~~-----~~ 258 (426)
.|+++||+++|++ .++++++||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 5899999999975 35999999999999999999999999999999999999986 49999999988643 23
Q ss_pred HHHhcceEEEecCCCCCc-ccHHHHHcCCCCCC------------CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCC
Q 014366 259 DSLRRHVGLVSQDITLFS-GTVAENIGYRDLMT------------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRG 325 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g 325 (426)
..+++.++|+||++.+|+ .|++||+.++.... ....+++.++++..++.+..+ ..+
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH-----------QRV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHh-----------CCc
Confidence 456778999999999887 59999998653110 001233455555555554443 355
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHH-HhcCEEEEEeCCE
Q 014366 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETV-MMAKRVFLLDNGK 402 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~D~i~vl~~G~ 402 (426)
.+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ +.|+|++||+++.+ ..||++++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999852 68999999999986 5799999999999
Q ss_pred EEEecccccc
Q 014366 403 LEELNRSTLL 412 (426)
Q Consensus 403 i~e~g~~~~l 412 (426)
+++.|+++++
T Consensus 231 i~~~g~~~~~ 240 (262)
T PRK09984 231 VFYDGSSQQF 240 (262)
T ss_pred EEEeCCHHHh
Confidence 9999998876
No 234
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=6.9e-47 Score=355.11 Aligned_cols=207 Identities=25% Similarity=0.380 Sum_probs=178.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 478999999975 36999999999999999999999999999999999999999999999999875321 357999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
+||++.+|+ .|++||+.++......+.+++.++++..++.++.+. .+.+||||||||++||||++.+|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCC
Confidence 999999886 599999975422112234566677777777665544 44799999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .|||+++|++|++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999999875 4689999999999885 799999999999999998754
No 235
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-47 Score=364.10 Aligned_cols=214 Identities=26% Similarity=0.305 Sum_probs=181.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC--------ccEEEEcCEeCCCCCHH
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL--------SGCILVDDHDVQNIRLD 259 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~--------~G~I~~~g~~i~~~~~~ 259 (426)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+..
T Consensus 2 l~~~nl~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRHR--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECCE--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 7899999999753 5999999999999999999999999999999999999998 99999999999877777
Q ss_pred HHhcceEEEecCCC-CCcccHHHHHcCCCCCC----C-CC---HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCCh
Q 014366 260 SLRRHVGLVSQDIT-LFSGTVAENIGYRDLMT----K-ID---MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~-lf~~ti~eni~~~~~~~----~-~~---~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSg 330 (426)
.+++.++|+||++. +|+.|++||+.++.... . .. .+.+.++++.. |+++.++....+|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA-----------GATALVGRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc-----------CcHhhhcCCcccCCH
Confidence 77888999999986 46789999998753110 0 11 12233344444 444455567789999
Q ss_pred HHHHHHHHHHHhc---------CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEE
Q 014366 331 GQRQRLAIARALY---------QNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLL 398 (426)
Q Consensus 331 GqkQRl~iARal~---------~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl 398 (426)
|||||++|||||+ .+|++|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+. .||++++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 59999999999999999999999999998753 689999999999885 79999999
Q ss_pred eCCEEEEecccccccc
Q 014366 399 DNGKLEELNRSTLLGS 414 (426)
Q Consensus 399 ~~G~i~e~g~~~~l~~ 414 (426)
++|++++.|+++++.+
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999998877654
No 236
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-47 Score=363.28 Aligned_cols=222 Identities=29% Similarity=0.440 Sum_probs=185.6
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----ccEEEEcCEeCCC--CCH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-----SGCILVDDHDVQN--IRL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~-----~G~I~~~g~~i~~--~~~ 258 (426)
+.|+++|++++|++. .+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.. .+.
T Consensus 6 ~~l~~~nl~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCCe--eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 369999999999753 5999999999999999999999999999999999999985 8999999998753 234
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-D----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
..+++.++|+||++.+|+.|++||+.++...... + .+++.++++..++.+++. ...+..+.+||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHH
Confidence 4667889999999999989999999764211111 1 223445556665544332 234557789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeC-----CEEEE
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDN-----GKLEE 405 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~-----G~i~e 405 (426)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999999864 3789999999999885 7999999999 99999
Q ss_pred eccccccccCc
Q 014366 406 LNRSTLLGSNH 416 (426)
Q Consensus 406 ~g~~~~l~~~~ 416 (426)
.|+++++.+++
T Consensus 237 ~~~~~~~~~~~ 247 (261)
T PRK14258 237 FGLTKKIFNSP 247 (261)
T ss_pred eCCHHHHHhCC
Confidence 99998887654
No 237
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-46 Score=363.02 Aligned_cols=222 Identities=28% Similarity=0.424 Sum_probs=185.5
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCC----
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQN---- 255 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~---- 255 (426)
.+.|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 14 ~~~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 14 QQKSEVNKLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred CceEEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 4579999999999753 599999999999999999999999999999999999875 79999999987642
Q ss_pred CCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC-----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCCh
Q 014366 256 IRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI-----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG 330 (426)
Q Consensus 256 ~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSg 330 (426)
.....+++.++|++|++.+|+.|++||+.++...... .++++..+++.+++.+ ++.+.++..+.+|||
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~ 164 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLSG 164 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCCH
Confidence 2345678889999999999988999999865211111 1234445555555432 222344566789999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccc
Q 014366 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 331 GqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~ 409 (426)
|||||++||||++++|+++||||||++||+.+.+.+.+.|+++.++.|+|+|||+++.+. .|||+++|++|++++.|++
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999999876789999999999985 7999999999999999998
Q ss_pred cccccC
Q 014366 410 TLLGSN 415 (426)
Q Consensus 410 ~~l~~~ 415 (426)
+++..+
T Consensus 245 ~~~~~~ 250 (265)
T PRK14252 245 DTIFIK 250 (265)
T ss_pred HHHHhC
Confidence 877643
No 238
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=8.2e-47 Score=353.94 Aligned_cols=205 Identities=31% Similarity=0.455 Sum_probs=173.7
Q ss_pred EEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH---HHh
Q 014366 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD---SLR 262 (426)
Q Consensus 188 i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~---~~r 262 (426)
++++|+++.|+++. +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68999999997531 4699999999999999999999999999999999999999999999999998766543 457
Q ss_pred cceEEEecCCCCCc-ccHHHHHcCCCCCC-CCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 263 RHVGLVSQDITLFS-GTVAENIGYRDLMT-KIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~-~ti~eni~~~~~~~-~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
+.++|+||++.+|. .|+.||+.++.... ..+. +++.++++.+++.++.+. .+.+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY-----------YPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHH
Confidence 88999999999987 69999998643211 1122 234455555555555444 4579999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCCEE
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNGKL 403 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G~i 403 (426)
+||||++++|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999998753 6899999999997778999999999986
No 239
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=9.4e-47 Score=377.21 Aligned_cols=211 Identities=27% Similarity=0.435 Sum_probs=176.6
Q ss_pred eEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHHhcceEE
Q 014366 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDSLRRHVGL 267 (426)
Q Consensus 192 ~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~----~~~~r~~i~~ 267 (426)
|++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....++.++|
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999753 34 999999999999999999999999999999999999999999999986432 2345778999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCCCC--HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTKID--MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
+||++.+|+. |++||+.++....... .+++.+.++..++.+ ..+..+.+||||||||++|||||+.
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGH-----------LLGRLPGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999975 9999998764221111 123444555555444 4444568999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++..++.
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 224 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcC
Confidence 9999999999999999999999999998753 689999999999885 699999999999999999887776553
No 240
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-46 Score=360.15 Aligned_cols=221 Identities=29% Similarity=0.383 Sum_probs=187.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCC--CHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNI--RLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~~--~~~ 259 (426)
.+.+++++++|++ .++++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++... ...
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 5889999999975 3599999999999999999999999999999999999986 799999999998643 334
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCC---CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
.+++.++|+||++.+|..|++||+.++..... ...+++.++++.+++.+.+.. ..++.+.+|||||+||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHHH
Confidence 56788999999999998899999987532111 112455666777766544322 23456789999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEe--------CCEEEEec
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLD--------NGKLEELN 407 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~--------~G~i~e~g 407 (426)
+|||||+++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .|||+++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 999999999999999999999999999999999999876789999999999875 799999996 89999999
Q ss_pred cccccccCc
Q 014366 408 RSTLLGSNH 416 (426)
Q Consensus 408 ~~~~l~~~~ 416 (426)
+++++.+++
T Consensus 239 ~~~~~~~~~ 247 (261)
T PRK14263 239 PTAQIFQNP 247 (261)
T ss_pred CHHHHHhCC
Confidence 988776543
No 241
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-46 Score=361.37 Aligned_cols=223 Identities=30% Similarity=0.421 Sum_probs=183.8
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcC------EeCCCCCHH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD------HDVQNIRLD 259 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g------~~i~~~~~~ 259 (426)
..|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++...+..
T Consensus 9 ~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 9 DVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 36999999999975 3599999999999999999999999999999999999999997666665 566555666
Q ss_pred HHhcceEEEecCCCCCcc-cHHHHHcCCCCCCCC-CH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKI-DM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~-~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
.+++.++|+||++.+|++ |++||+.++...... +. +++.++++..++.+++ ....+..+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHH
Confidence 778899999999999875 999999865321111 12 2234444544443221 1223456789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHH-HhcCEEEEEeCCEEEEecccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l 412 (426)
||++||||++.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+ ..||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999887678999999999998 47999999999999999998877
Q ss_pred ccCcc
Q 014366 413 GSNHD 417 (426)
Q Consensus 413 ~~~~~ 417 (426)
.+++.
T Consensus 240 ~~~~~ 244 (257)
T PRK14246 240 FTSPK 244 (257)
T ss_pred HhCCC
Confidence 76543
No 242
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-46 Score=355.40 Aligned_cols=212 Identities=33% Similarity=0.514 Sum_probs=180.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 468999999974 28999999999999999999999999999999999999999999999999876543 3678999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
++|++.+|+ .|+.||+.++......+ .+++.++++.+++.+++++ .+.+||||||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNR-----------KPETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhc-----------CcccCCHHHHHHHHHHHHH
Confidence 999999885 69999998643211111 2334556666666665554 4478999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+++|++++|||||++||+.+++.+.+.|+++.. ++|+|++||+++.+. .||++++|++|++++.|+++.+.+.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999999999998753 789999999999886 6999999999999999988766544
No 243
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-46 Score=337.98 Aligned_cols=171 Identities=55% Similarity=0.853 Sum_probs=159.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++...++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 46899999997643369999999999999999999999999999999999999999999999999887777777889999
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
++|++.+|+.|++||+ ||||||||++||||++.+|+
T Consensus 81 ~~~~~~~~~~t~~e~l--------------------------------------------LS~G~~~rl~la~al~~~p~ 116 (171)
T cd03228 81 VPQDPFLFSGTIRENI--------------------------------------------LSGGQRQRIAIARALLRDPP 116 (171)
T ss_pred EcCCchhccchHHHHh--------------------------------------------hCHHHHHHHHHHHHHhcCCC
Confidence 9999999988999997 99999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCE
Q 014366 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGK 402 (426)
Q Consensus 348 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~ 402 (426)
++||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|+
T Consensus 117 llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 117 ILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999998876789999999999987799999999985
No 244
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-46 Score=365.99 Aligned_cols=221 Identities=31% Similarity=0.471 Sum_probs=184.0
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEEcCEeCCCC--CH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-----PLSGCILVDDHDVQNI--RL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-----p~~G~I~~~g~~i~~~--~~ 258 (426)
..|+++|++++|++ .++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +.
T Consensus 44 ~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 44 AKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred ceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 35999999999975 359999999999999999999999999999999999986 6899999999998643 34
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCC------------C-----CHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK------------I-----DMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~------------~-----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
..+++.++|+||++.+|+.|++||+.++..... . ..+++.++++.+++.+ ++.+.+
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~ 194 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-------EVNDRL 194 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-------hhhHHh
Confidence 567788999999999998999999987521100 0 0122344444444322 333455
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEE-EEEe
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRV-FLLD 399 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i-~vl~ 399 (426)
+.++.+||||||||++|||||+++|++|||||||++||+.++..+.+.|+++.++.|+|++||+++.+. .||++ ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 667889999999999999999999999999999999999999999999999876689999999999985 79997 5789
Q ss_pred CCEEEEeccccccccC
Q 014366 400 NGKLEELNRSTLLGSN 415 (426)
Q Consensus 400 ~G~i~e~g~~~~l~~~ 415 (426)
+|++++.|+++++.++
T Consensus 275 ~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 275 GGELVEYDDTDKIFEN 290 (305)
T ss_pred CCEEEEeCCHHHHHhC
Confidence 9999999998877654
No 245
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-46 Score=358.73 Aligned_cols=226 Identities=28% Similarity=0.418 Sum_probs=184.4
Q ss_pred EEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-C----CccEEEEcCEeCCCCCHHH
Q 014366 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-P----LSGCILVDDHDVQNIRLDS 260 (426)
Q Consensus 188 i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-p----~~G~I~~~g~~i~~~~~~~ 260 (426)
++++|++..|.... ..+++||||++++||++||||+|||||||+.+.|+|+++ | .+|+|.++|+|+..++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 67899999997532 369999999999999999999999999999999999998 4 5799999999999998765
Q ss_pred H---h-cceEEEecCCC--CCcc-cHHHHHc----CCCCC--CCCCHHHHHHHHHHhchHH---HHHhcCCCcccccCCC
Q 014366 261 L---R-RHVGLVSQDIT--LFSG-TVAENIG----YRDLM--TKIDMERVEHTARTANADE---FVRTLPQGYNTHIGPR 324 (426)
Q Consensus 261 ~---r-~~i~~v~Q~~~--lf~~-ti~eni~----~~~~~--~~~~~~~~~~~~~~~~l~~---~~~~lp~g~~t~~~~~ 324 (426)
+ | +.|++|||+|. |-+. ||.+-+. ..... .....++..+.++.+++.+ .++. .
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~-----------Y 150 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKS-----------Y 150 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhh-----------C
Confidence 3 3 46999999986 3332 6655553 21100 0011335566677777653 3344 4
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCC
Q 014366 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNG 401 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G 401 (426)
+.+|||||||||.||.|++.+|++||.||||+|||...+.+|++.|+++.+ +.++|+||||+..+. .||||+||..|
T Consensus 151 PhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG 230 (316)
T COG0444 151 PHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230 (316)
T ss_pred CcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence 579999999999999999999999999999999999999999999999864 689999999999886 79999999999
Q ss_pred EEEEeccccccccCcchhhhcCc
Q 014366 402 KLEELNRSTLLGSNHDSLVSAGL 424 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~~~l~~~~~ 424 (426)
+|+|.|+.++++.++..=+..||
T Consensus 231 ~iVE~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 231 RIVEEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred EEEEeCCHHHHhcCCCChHHHHH
Confidence 99999999998888755444443
No 246
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-46 Score=348.26 Aligned_cols=200 Identities=28% Similarity=0.456 Sum_probs=166.6
Q ss_pred eEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHHhcceEE
Q 014366 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDSLRRHVGL 267 (426)
Q Consensus 192 ~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~----~~~~r~~i~~ 267 (426)
||+++|++. .+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+++.++|
T Consensus 5 ~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 5 DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEE
Confidence 899999864 34 99999999 999999999999999999999999999999999999876422 2345778999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCC--CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTK--IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
+||++.+|+ .|++||+.++..... ...+++.+.++..++ +...+..+.+||||||||++||||++.
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 80 VFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGL-----------DHLLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred EecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCC-----------HhHhhcCcccCCHHHHHHHHHHHHHhc
Confidence 999999886 599999986532111 112233444444444 444445668999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999998743 689999999999885 79999999999998765
No 247
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.9e-46 Score=351.61 Aligned_cols=211 Identities=27% Similarity=0.473 Sum_probs=170.6
Q ss_pred EEEEeEEEEeCCC--CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEEcCEeCCCCCHHHHh
Q 014366 188 VKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD---PLSGCILVDDHDVQNIRLDSLR 262 (426)
Q Consensus 188 i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~I~~~g~~i~~~~~~~~r 262 (426)
+.++||+++|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5689999999865 2579999999999999999999999999999999999999 99999999999875 34667
Q ss_pred cceEEEecCCCCCcc-cHHHHHcCCCCCC--CCCHHHHHHHHHHhchHH-HHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 263 RHVGLVSQDITLFSG-TVAENIGYRDLMT--KIDMERVEHTARTANADE-FVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~~-ti~eni~~~~~~~--~~~~~~~~~~~~~~~l~~-~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
+.++|+||++.+|+. |++||+.++.... ....+.... ....+ .++.+ ++.........+||||||||++|
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~l 154 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRK----KRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSI 154 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHH----HHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHH
Confidence 889999999999976 9999998642111 000111000 00111 12221 33334445678999999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccCh-HHH-HhcCEEEEEeCCEEEEec
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHL-ETV-MMAKRVFLLDNGKLEELN 407 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~-~~~-~~~D~i~vl~~G~i~e~g 407 (426)
|||++++|+++||||||++||+.+++.+.+.++++. ++.|+|++||++ +.+ ..||++++|++|++++.|
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999875 468999999998 455 589999999999998865
No 248
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-47 Score=330.58 Aligned_cols=218 Identities=32% Similarity=0.447 Sum_probs=188.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----------
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI---------- 256 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~---------- 256 (426)
.++++|++++|+.. .+|++|||+.++|+.+.|+|.|||||||+++||.=+..|++|.|.++|+.++-.
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 58999999999875 499999999999999999999999999999999999999999999999987522
Q ss_pred C---HHHHhcceEEEecCCCCCc-ccHHHHHcCC------CCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCC
Q 014366 257 R---LDSLRRHVGLVSQDITLFS-GTVAENIGYR------DLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGS 326 (426)
Q Consensus 257 ~---~~~~r~~i~~v~Q~~~lf~-~ti~eni~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~ 326 (426)
+ ...+|.+.++|||+..|++ .|+.||+.-+ .+. ....++.+..+.++++.+-.+..| .
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k-~ea~e~Ae~~L~kVGi~ek~~~YP-----------~ 151 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSK-AEAIERAEKYLAKVGIAEKADAYP-----------A 151 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCH-HHHHHHHHHHHHHhCchhhhhcCc-----------c
Confidence 2 2346788999999999995 5999998532 211 111234455666777766665554 7
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEE
Q 014366 327 SLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLE 404 (426)
Q Consensus 327 ~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~ 404 (426)
.|||||+||++|||||+.+|+++++|||||+|||+-.-++++.++++. +++|.++|||.+.+++ .+.+|+++++|.|.
T Consensus 152 ~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE 231 (256)
T COG4598 152 HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE 231 (256)
T ss_pred ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec
Confidence 999999999999999999999999999999999999999999999986 5899999999999997 58999999999999
Q ss_pred EeccccccccCcch
Q 014366 405 ELNRSTLLGSNHDS 418 (426)
Q Consensus 405 e~g~~~~l~~~~~~ 418 (426)
|+|+|+.++.++++
T Consensus 232 E~G~P~qvf~nP~S 245 (256)
T COG4598 232 EEGPPEQVFGNPQS 245 (256)
T ss_pred ccCChHHHhcCCCC
Confidence 99999999988754
No 249
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-46 Score=336.14 Aligned_cols=172 Identities=47% Similarity=0.707 Sum_probs=158.1
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC--HHHHhcce
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR--LDSLRRHV 265 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~--~~~~r~~i 265 (426)
|+++|++++|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 478999999975 35999999999999999999999999999999999999999999999999987765 45678899
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
+|++|++.+|+ .|++||+.+. ||||||||++||||+++
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~-----------------------------------------lS~G~~qr~~la~al~~ 117 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG-----------------------------------------LSGGQQQRVALARALAM 117 (178)
T ss_pred EEEecCCccCCCCCHHHheeec-----------------------------------------CCHHHHHHHHHHHHHHC
Confidence 99999999886 4999998542 99999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCE
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~ 402 (426)
+|+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+. .||++++|++|+
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999998754 589999999999997 799999999985
No 250
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.2e-45 Score=356.11 Aligned_cols=221 Identities=34% Similarity=0.453 Sum_probs=180.6
Q ss_pred cEEEEeEEEEeCCC-------CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-
Q 014366 187 DVKFCNISFKYADN-------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL- 258 (426)
Q Consensus 187 ~i~~~~v~~~y~~~-------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~- 258 (426)
.|+++||+|+|+++ .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38899999999741 2469999999999999999999999999999999999999999999999999877654
Q ss_pred --HHHhcceEEEecCCC--CCc-ccHHHHHcCCCC-CCCCCHHHHHHHHHHhchHHHHHhcCCCccc-ccCCCCCCCChH
Q 014366 259 --DSLRRHVGLVSQDIT--LFS-GTVAENIGYRDL-MTKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGG 331 (426)
Q Consensus 259 --~~~r~~i~~v~Q~~~--lf~-~ti~eni~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~~~g~~LSgG 331 (426)
..+++.++|++|++. +++ .|+.||+.+... ....+.++ ....+.+.++.+ |+++ ..+..+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE-----RLARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHH-----HHHHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 346788999999984 443 599999864211 00111111 111223344443 5542 456678899999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~ 408 (426)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||+++.+. .||++++|++|++++.|+
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 99999999999999999999999999999999999999998753 689999999999986 799999999999999999
Q ss_pred cccccc
Q 014366 409 STLLGS 414 (426)
Q Consensus 409 ~~~l~~ 414 (426)
++++.+
T Consensus 236 ~~~~~~ 241 (268)
T PRK10419 236 VGDKLT 241 (268)
T ss_pred hhhccC
Confidence 887764
No 251
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.9e-46 Score=334.25 Aligned_cols=170 Identities=38% Similarity=0.633 Sum_probs=156.8
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
++++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..+++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 4689999999753 5999999999999999999999999999999999999999999999999987654 566788999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
+||++.+|+. |++||+. ||||||||++||||++.+|
T Consensus 78 ~~q~~~~~~~~tv~~~~~-------------------------------------------LS~G~~qrv~laral~~~p 114 (173)
T cd03230 78 LPEEPSLYENLTVRENLK-------------------------------------------LSGGMKQRLALAQALLHDP 114 (173)
T ss_pred EecCCccccCCcHHHHhh-------------------------------------------cCHHHHHHHHHHHHHHcCC
Confidence 9999998876 9999973 9999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEE
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i 403 (426)
+++||||||++||+.+.+.+.+.|+++. ++.|+|++||+++.+. .||++++|++|++
T Consensus 115 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 115 ELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999885 4589999999999887 7999999999974
No 252
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=356.92 Aligned_cols=212 Identities=24% Similarity=0.326 Sum_probs=174.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+++|+++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 58999999999643 369999999999999999999999999999999999999999999999998742 11234699
Q ss_pred EEecCCCC---CcccHHHHHcCCCCC-------C-CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 267 LVSQDITL---FSGTVAENIGYRDLM-------T-KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 267 ~v~Q~~~l---f~~ti~eni~~~~~~-------~-~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
|+||++.+ +..++++|+.++... . ....+++.++++..++.++.+ ....+||||||||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG~~qr 150 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-----------RQIGELSGGQKKR 150 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHH
Confidence 99999865 345789998653210 0 011233445556666655443 3557899999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
++|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|||++||+++.+. .||+++++ +|++++.|+++++.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999999999885 4689999999998875 79999777 89999999988765
Q ss_pred c
Q 014366 414 S 414 (426)
Q Consensus 414 ~ 414 (426)
+
T Consensus 230 ~ 230 (272)
T PRK15056 230 T 230 (272)
T ss_pred C
Confidence 4
No 253
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=7.1e-46 Score=355.07 Aligned_cols=217 Identities=21% Similarity=0.303 Sum_probs=177.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC----CccEEEEcCEeCCCCCHHHHh
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----LSGCILVDDHDVQNIRLDSLR 262 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p----~~G~I~~~g~~i~~~~~~~~r 262 (426)
.|+++|++++| + +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ...+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 58999999999 3 3599999999999999999999999999999999999999 999999999988632 2234
Q ss_pred cceEEEecCCC-CC-c-ccHHHHHcCCC--CCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 263 RHVGLVSQDIT-LF-S-GTVAENIGYRD--LMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 263 ~~i~~v~Q~~~-lf-~-~ti~eni~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
+.++|+||++. .| + .|+.+|+.+.. ......++++.+.++.+++.++ ++.++..+.+||||||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHH
Confidence 67999999985 34 3 48888875421 0011223445556665555331 12345567899999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||+++.+. .|||+++|++|++++.|+++++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999998743 689999999999985 799999999999999999887765
Q ss_pred Cc
Q 014366 415 NH 416 (426)
Q Consensus 415 ~~ 416 (426)
++
T Consensus 231 ~~ 232 (254)
T PRK10418 231 AP 232 (254)
T ss_pred CC
Confidence 43
No 254
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4e-46 Score=379.23 Aligned_cols=220 Identities=35% Similarity=0.445 Sum_probs=182.9
Q ss_pred ccEEEEeEEEEeCC---------CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC
Q 014366 186 GDVKFCNISFKYAD---------NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI 256 (426)
Q Consensus 186 ~~i~~~~v~~~y~~---------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~ 256 (426)
.-++++|++++|.. +...+++||||++++||++||||+||||||||.|+|+|+++|++|+|.++|.+ .++
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~~ 357 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LDL 357 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-ccc
Confidence 35889999999973 12468999999999999999999999999999999999999999999999987 333
Q ss_pred C---HHHHhcceEEEecCCC--CCc-ccHHHHHcCCCCCC-C----CCHHHHHHHHHHhchHH-HHHhcCCCcccccCCC
Q 014366 257 R---LDSLRRHVGLVSQDIT--LFS-GTVAENIGYRDLMT-K----IDMERVEHTARTANADE-FVRTLPQGYNTHIGPR 324 (426)
Q Consensus 257 ~---~~~~r~~i~~v~Q~~~--lf~-~ti~eni~~~~~~~-~----~~~~~~~~~~~~~~l~~-~~~~lp~g~~t~~~~~ 324 (426)
+ ....|+++-+|||||+ |-+ .||+++|.-....+ . ...+++.+.++.+++.+ ++.+ .
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~r-----------y 426 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR-----------Y 426 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhc-----------C
Confidence 2 3456788999999997 433 59999996432111 1 11233555566666654 4444 5
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCC
Q 014366 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNG 401 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G 401 (426)
+.+||||||||+||||||+.+|+++++|||||+||+..+..|.+.|+++.+ +.|.|+||||++.++ .||||+||++|
T Consensus 427 P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G 506 (539)
T COG1123 427 PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDG 506 (539)
T ss_pred chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECC
Confidence 579999999999999999999999999999999999999999999999864 689999999999997 69999999999
Q ss_pred EEEEeccccccccCcc
Q 014366 402 KLEELNRSTLLGSNHD 417 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~~ 417 (426)
+|+|.|+.+.++++++
T Consensus 507 ~iVE~G~~~~v~~~p~ 522 (539)
T COG1123 507 RIVEEGPTEKVFENPQ 522 (539)
T ss_pred eEEEeCCHHHHhcCCC
Confidence 9999998888887753
No 255
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=5.7e-46 Score=344.47 Aligned_cols=196 Identities=30% Similarity=0.428 Sum_probs=163.9
Q ss_pred EEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH----HHHhcce
Q 014366 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL----DSLRRHV 265 (426)
Q Consensus 190 ~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~----~~~r~~i 265 (426)
++||++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.+
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4789999975 359999999999999999999999999999999999999999999999999764432 2356789
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
+|++|++.+|+ .|++||+.++....... .+++.++++..++.++. +....+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL-----------KQKIYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh-----------cCChhhCCHHHHHHHHHHH
Confidence 99999999986 59999998642211111 23344555555554443 4456799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEE
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLL 398 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl 398 (426)
||+++|++|||||||++||+.+++.+.+.|+++. ++.|+|++||+++.+..||++++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999999875 368999999999988889999875
No 256
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-45 Score=341.80 Aligned_cols=190 Identities=25% Similarity=0.343 Sum_probs=162.5
Q ss_pred cEEEEeEEEEeCCC--CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEEcCEeCCCCCHHHH
Q 014366 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD---PLSGCILVDDHDVQNIRLDSL 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~I~~~g~~i~~~~~~~~ 261 (426)
.+.++||+|.|+.+ .+++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999853 4579999999999999999999999999999999999999 89999999999987654 356
Q ss_pred hcceEEEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
++.++|++|++.+|+. |++||+.++... . ..+....||||||||++|||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~--------~----------------------~~~~~~~LS~Ge~qrl~lar 131 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC--------K----------------------GNEFVRGISGGERKRVSIAE 131 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh--------c----------------------cccchhhCCHHHHHHHHHHH
Confidence 7789999999988864 999999764210 0 12345789999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEec-cChHHH-HhcCEEEEEeCCEEEEec
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIA-HHLETV-MMAKRVFLLDNGKLEELN 407 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~it-H~~~~~-~~~D~i~vl~~G~i~e~g 407 (426)
||+.+|+++||||||++||+.+++.+.+.|+++.+ +.|+|+++ |+.+.+ ..||++++|++|++++.|
T Consensus 132 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 132 ALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999999998753 45666655 555666 579999999999998764
No 257
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.1e-45 Score=387.04 Aligned_cols=215 Identities=26% Similarity=0.372 Sum_probs=182.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh-cce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR-RHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r-~~i 265 (426)
.|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ +.+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999975 3599999999999999999999999999999999999999999999999998876665544 469
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
+|+||++.+|+. |++||+.++........+++.++++..+ ++........+||||||||++|||||+.
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALG-----------CQLDLDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcC-----------CCccccCChhhCCHHHHHHHHHHHHHHc
Confidence 999999998865 9999998864211111233344444444 3334455678999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
+|++|||||||++||+.+.+.+.+.|+++. +++|||++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999999875 4689999999999885 799999999999999998876643
No 258
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.7e-45 Score=352.16 Aligned_cols=221 Identities=23% Similarity=0.355 Sum_probs=178.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEe-----CCCCCHHH-
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD-----VQNIRLDS- 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~-----i~~~~~~~- 260 (426)
.|+++||+++|++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+..+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGGG--KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCCc--eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 48999999999753 58999999999999999999999999999999999999999999999987 66555443
Q ss_pred ---HhcceEEEecCCC--CC-cccHHHHHcCCCC-CCCCCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHH
Q 014366 261 ---LRRHVGLVSQDIT--LF-SGTVAENIGYRDL-MTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQ 332 (426)
Q Consensus 261 ---~r~~i~~v~Q~~~--lf-~~ti~eni~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGq 332 (426)
+++.++|++|++. ++ ..|+.+|+.+... .......+. ...+.++++.+ |++ +..+..+.+|||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGGM 153 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHHH
Confidence 2457999999985 33 3488888853210 000011111 11233455555 343 45666788999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccc
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~ 409 (426)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++. + +.|+|++||+++.+. .||++++|++|++++.|++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLT 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998874 2 689999999999987 6999999999999999998
Q ss_pred cccccCc
Q 014366 410 TLLGSNH 416 (426)
Q Consensus 410 ~~l~~~~ 416 (426)
+++.+++
T Consensus 234 ~~~~~~~ 240 (253)
T TIGR02323 234 DQVLDDP 240 (253)
T ss_pred HHHhcCC
Confidence 7776543
No 259
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-45 Score=329.45 Aligned_cols=217 Identities=28% Similarity=0.413 Sum_probs=190.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+.+|+|++-.++ .+++++||++++||.+||+||||||||||+|.|+|...|++|++.++|.++..++..++.++-++
T Consensus 2 i~a~nls~~~~Gr--~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeecc--eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 7889999988654 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC-CcccHHHHHcCCCCCCC--CC--HHH--HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 268 VSQDITL-FSGTVAENIGYRDLMTK--ID--MER--VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 268 v~Q~~~l-f~~ti~eni~~~~~~~~--~~--~~~--~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
+||+..+ |+.||+|-+.+|..... .. +++ ..+++..+++..+-.+ .-..|||||||||.+||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-----------~y~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR-----------DYRTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc-----------chhhcCchHHHHHHHHH
Confidence 9999987 89999999999864221 11 222 5677888887776644 34689999999999999
Q ss_pred HhcC------CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 341 ALYQ------NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 341 al~~------~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
.|.+ ++++|+||||||+||...+..+++..+++. ++..|+.|-||++... +||||++|++|+++..|+|++.
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 9976 345899999999999999999999999985 4689999999999885 8999999999999999999988
Q ss_pred ccCcc
Q 014366 413 GSNHD 417 (426)
Q Consensus 413 ~~~~~ 417 (426)
.+.+.
T Consensus 229 lt~Et 233 (259)
T COG4559 229 LTDET 233 (259)
T ss_pred cCHHH
Confidence 77653
No 260
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-45 Score=392.68 Aligned_cols=219 Identities=28% Similarity=0.368 Sum_probs=181.9
Q ss_pred cEEEEeEEEEeCCC---------CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC
Q 014366 187 DVKFCNISFKYADN---------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257 (426)
Q Consensus 187 ~i~~~~v~~~y~~~---------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~ 257 (426)
.|+++||+++|+.. ...+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 59999999999621 135899999999999999999999999999999999999999999999999987665
Q ss_pred HH---HHhcceEEEecCC--CCCc-ccHHHHHcCCCCCCCC-C----HHHHHHHHHHhchH-HHHHhcCCCcccccCCCC
Q 014366 258 LD---SLRRHVGLVSQDI--TLFS-GTVAENIGYRDLMTKI-D----MERVEHTARTANAD-EFVRTLPQGYNTHIGPRG 325 (426)
Q Consensus 258 ~~---~~r~~i~~v~Q~~--~lf~-~ti~eni~~~~~~~~~-~----~~~~~~~~~~~~l~-~~~~~lp~g~~t~~~~~g 325 (426)
.. .+|++|+||||++ .+++ .|+.||+.++...... . .+++.+.++.+++. +..+ ...
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~-----------~~~ 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW-----------RYP 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhh-----------CCc
Confidence 43 3567899999998 3665 4999999753211111 1 13344556666553 3333 345
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCE
Q 014366 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~ 402 (426)
.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999998753 689999999999986 799999999999
Q ss_pred EEEeccccccccCc
Q 014366 403 LEELNRSTLLGSNH 416 (426)
Q Consensus 403 i~e~g~~~~l~~~~ 416 (426)
+++.|+++++..++
T Consensus 542 iv~~g~~~~i~~~p 555 (623)
T PRK10261 542 IVEIGPRRAVFENP 555 (623)
T ss_pred EEEecCHHHHhcCC
Confidence 99999988876543
No 261
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2e-45 Score=338.02 Aligned_cols=182 Identities=32% Similarity=0.485 Sum_probs=161.4
Q ss_pred cEEEEeEEEEeCCC----CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCccEEEEcCEeCCCCCHHH
Q 014366 187 DVKFCNISFKYADN----MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVDDHDVQNIRLDS 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~~----~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~--~p~~G~I~~~g~~i~~~~~~~ 260 (426)
.|+++||+|+|++. .+++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999752 246999999999999999999999999999999999999 9999999999998864 35
Q ss_pred HhcceEEEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 261 LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
+++.++|+||++.+|+. |++||+.++.. . .+||||||||++||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~---------------------~---------------~~LS~G~~qrv~la 123 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK---------------------L---------------RGLSGGERKRVSIA 123 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH---------------------h---------------ccCCHHHHHHHHHH
Confidence 67889999999998864 99999854210 0 07999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChH-HH-HhcCEEEEEeCCEEEEec
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLE-TV-MMAKRVFLLDNGKLEELN 407 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~-~~-~~~D~i~vl~~G~i~e~g 407 (426)
||++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++ .+ ..||++++|++|++++.|
T Consensus 124 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 124 LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999875 4789999999996 45 479999999999998754
No 262
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=4.6e-45 Score=348.94 Aligned_cols=214 Identities=24% Similarity=0.388 Sum_probs=175.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCccEEEEcCEeCCCCCHHHHhc-
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDSLRR- 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~--~~p~~G~I~~~g~~i~~~~~~~~r~- 263 (426)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++...+....++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4999999999975 3599999999999999999999999999999999998 6899999999999998776655444
Q ss_pred ceEEEecCCCCCcc-cHHHHHcCCCCC-------CCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCC-CCCh
Q 014366 264 HVGLVSQDITLFSG-TVAENIGYRDLM-------TKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGS-SLSG 330 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eni~~~~~~-------~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~-~LSg 330 (426)
.++|++|++.+|++ |+.+|+.+.... .+.+ .+++.++++.+++.+ +.++.... .|||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LSg 154 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGFSG 154 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCCCH
Confidence 48999999998876 899998753210 0011 112233344444321 23344444 5999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-h-cCEEEEEeCCEEEEec
Q 014366 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-M-AKRVFLLDNGKLEELN 407 (426)
Q Consensus 331 GqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~-~D~i~vl~~G~i~e~g 407 (426)
|||||++||||++++|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. . ||++++|++|++++.|
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999875 4789999999999886 3 8999999999999999
Q ss_pred ccccc
Q 014366 408 RSTLL 412 (426)
Q Consensus 408 ~~~~l 412 (426)
+++.+
T Consensus 235 ~~~~~ 239 (252)
T CHL00131 235 DAELA 239 (252)
T ss_pred Chhhh
Confidence 88743
No 263
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.4e-46 Score=320.62 Aligned_cols=209 Identities=29% Similarity=0.382 Sum_probs=177.1
Q ss_pred cEEEEeEEEEeCCC--CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---H
Q 014366 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---L 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~ 261 (426)
-|+++++++.-+.. .-.+|++|+|.|++||.+|||||||||||||+-+++|+..|++|+|.+.|+++..++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 47888898887643 346999999999999999999999999999999999999999999999999999887643 3
Q ss_pred h-cceEEEecCCCCCc-ccHHHHHcCCCCCCCC----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 262 R-RHVGLVSQDITLFS-GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 262 r-~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
| +++|+|||...|.+ .|..||+.......+. ..+...+.++.+++.+-+.+ .+.+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~H-----------yP~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTH-----------YPAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccccccc-----------CccccCchHHHH
Confidence 4 57999999999875 5999999876443321 12234455555555555444 457999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHHhcCEEEEEeCCEEEEe
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDNGKLEEL 406 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~ 406 (426)
||||||+...|+||+.||||-+||..|-++|.+.+-.+. .+.|.++||||+.....|||++-|++|++++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999998775 36799999999999999999999999999853
No 264
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-45 Score=337.26 Aligned_cols=181 Identities=28% Similarity=0.415 Sum_probs=160.0
Q ss_pred cEEEEeEEEEeCCC--CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCccEEEEcCEeCCCCCHHHHh
Q 014366 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVDDHDVQNIRLDSLR 262 (426)
Q Consensus 187 ~i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~--~p~~G~I~~~g~~i~~~~~~~~r 262 (426)
.|+++|++++|++. .+++++++||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 48899999999752 246999999999999999999999999999999999986 489999999999875 4567
Q ss_pred cceEEEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 263 RHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
+.++|++|++.+|+. |++||+.++. .++ +||||||||++||||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~------------~~~------------------------~LSgGe~qrv~la~a 122 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA------------LLR------------------------GLSVEQRKRLTIGVE 122 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH------------HHh------------------------cCCHHHhHHHHHHHH
Confidence 789999999988875 9999996421 000 799999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHH-H-HhcCEEEEEeC-CEEEEec
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLET-V-MMAKRVFLLDN-GKLEELN 407 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~-~-~~~D~i~vl~~-G~i~e~g 407 (426)
++.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++. + ..||++++|++ |++++.|
T Consensus 123 l~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 123 LAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999875 36899999999984 4 68999999999 9998765
No 265
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-45 Score=382.91 Aligned_cols=218 Identities=26% Similarity=0.400 Sum_probs=181.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeCCCCCHHH-Hhc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQNIRLDS-LRR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p--~~G~I~~~g~~i~~~~~~~-~r~ 263 (426)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.++...+..+ +++
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999975 3599999999999999999999999999999999999996 8999999999997766543 457
Q ss_pred ceEEEecCCCCCcc-cHHHHHcCCCCCC---CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 264 HVGLVSQDITLFSG-TVAENIGYRDLMT---KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
.++||||++.+|+. |++||+.++.... ..+.++..+ .+.++++.+ |++...+....+||||||||++||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHHH
Confidence 79999999988864 9999998764211 112211111 122334443 455555667789999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|||+.+|++|||||||++||+.++..+.+.|.++. +++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 99999999999999999999999999999999874 4689999999999886 79999999999999999887654
No 266
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.7e-45 Score=347.26 Aligned_cols=194 Identities=28% Similarity=0.384 Sum_probs=158.9
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEe-cCCCCCc-ccH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS-QDITLFS-GTV 279 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~-Q~~~lf~-~ti 279 (426)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...++++++|++ |++.+|+ .|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 3699999999999999999999999999999999999999999999999986542 345677899998 5667764 599
Q ss_pred HHHHcCCCCCCCCCHHH----HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccC
Q 014366 280 AENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355 (426)
Q Consensus 280 ~eni~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpt 355 (426)
+||+.+.......+.++ +..+++..++.+ .......+||||||||++|||||+.+|+++||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEE-----------LLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99997542211222222 233344444433 333456789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 356 SALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 356 s~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999998743 689999999999875 69999999999998764
No 267
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.7e-45 Score=383.44 Aligned_cols=218 Identities=25% Similarity=0.358 Sum_probs=180.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i 265 (426)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... .++.+
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999975 35999999999999999999999999999999999999999999999999987655443 35679
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCC----CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMT----KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
+|+||++.+|+. |++||+.++.... ..+.++..+ .+.+.++.+ |+.........+||||||||++|||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHH
Confidence 999999988864 9999998753211 111211111 122333333 4544556667899999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
||+.+|++|||||||++||+.+++.+.+.|+++. .+.|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 9999999999999999999999999999999874 4689999999999885 79999999999999999887653
No 268
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-45 Score=384.53 Aligned_cols=218 Identities=22% Similarity=0.367 Sum_probs=181.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i 265 (426)
.|+++|++++|++ +++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... .++.+
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999975 35999999999999999999999999999999999999999999999999998776544 34679
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCC----CCC---CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLM----TKI---DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~----~~~---~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
+|+||++.+|+. |++||+.++... ... +.++..+ .+.+.++.+ |+....+....+||||||||++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV--GLKVDLDEKVANLSISHKQMLE 155 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHH
Confidence 999999988865 999999875310 010 1111111 122333333 4444556677899999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|||||+.+|++|||||||++||+.++..+.+.|+++. +++|||++||+++.+. .||++++|++|++++.|+++++.
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCC
Confidence 9999999999999999999999999999999999875 4689999999999986 79999999999999999887654
No 269
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3e-45 Score=332.90 Aligned_cols=177 Identities=38% Similarity=0.564 Sum_probs=158.7
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEE
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v 268 (426)
+++|++++|++ .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999975 3599999999999999999999999999999999999999999999999999887777778889999
Q ss_pred ecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCE
Q 014366 269 SQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSV 348 (426)
Q Consensus 269 ~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~i 348 (426)
|| +++.+++.++.+. .+.+||||||||++||||++++|++
T Consensus 79 ~q-----------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~l 118 (180)
T cd03214 79 PQ-----------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPI 118 (180)
T ss_pred HH-----------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99 4555566555443 4579999999999999999999999
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHH-HhcCEEEEEeCCEEEEec
Q 014366 349 LILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETV-MMAKRVFLLDNGKLEELN 407 (426)
Q Consensus 349 lllDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g 407 (426)
+||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+ ..||++++|++|++++.|
T Consensus 119 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 119 LLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999998854 68999999999998 579999999999998653
No 270
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=5.7e-45 Score=336.60 Aligned_cols=183 Identities=29% Similarity=0.441 Sum_probs=162.2
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCccEEEEcCEeCCCCCHHHH-hcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDSL-RRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~--~~p~~G~I~~~g~~i~~~~~~~~-r~~ 264 (426)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.... +..
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 468999999975 3699999999999999999999999999999999999 58999999999999988766544 456
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
++|+||++.+|++ ++++|+ ... ..+||||||||++||||++
T Consensus 79 i~~v~q~~~~~~~~~~~~~l---------------------------~~~-----------~~~LS~G~~qrv~laral~ 120 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL---------------------------RYV-----------NEGFSGGEKKRNEILQLLL 120 (200)
T ss_pred EEEeecChhhccCccHHHHH---------------------------hhc-----------cccCCHHHHHHHHHHHHHh
Confidence 9999999998875 666655 011 1479999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH--hcCEEEEEeCCEEEEecccc
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM--MAKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~--~~D~i~vl~~G~i~e~g~~~ 410 (426)
.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+.+
T Consensus 121 ~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 190 (200)
T cd03217 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190 (200)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence 99999999999999999999999999998854 689999999999887 69999999999999999554
No 271
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=6.8e-45 Score=347.04 Aligned_cols=209 Identities=27% Similarity=0.373 Sum_probs=174.0
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEE
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v 268 (426)
+++||++. .+|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|.++|+++...+...+++.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 56788874 27999999999999999999999999999999999996 499999999999887777778889999
Q ss_pred ecCCCCC-cccHHHHHcCCCCCCCCC---HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 269 SQDITLF-SGTVAENIGYRDLMTKID---MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 269 ~Q~~~lf-~~ti~eni~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
||++.++ ..|+++|+.++....... .+++.++++..++.+. ....+..||||||||++|||||+.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDK-----------LGRSVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHHHhc
Confidence 9998655 569999998763221111 2234445555554433 344568999999999999999997
Q ss_pred -------CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 345 -------NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 345 -------~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+|+++||||||++||+.+++.+.+.|+++. ++.|+|++||+++.+. .||++++|++|++++.|+++++.++
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 223 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTP 223 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhCc
Confidence 679999999999999999999999999885 4689999999999774 7999999999999999988766543
No 272
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=9.8e-45 Score=346.33 Aligned_cols=201 Identities=28% Similarity=0.460 Sum_probs=174.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+++|++. ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECCc--eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 48999999999753 599999999999999999999999999999999999999999999986 24699
Q ss_pred EEecCCCCCc---ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc
Q 014366 267 LVSQDITLFS---GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 267 ~v~Q~~~lf~---~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
|+||++.++. .|+++|+.+.. ....+++.++++.+++.++.+. ....||||||||++||||++
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~laral~ 136 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRP---GTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARALL 136 (251)
T ss_pred EeccccccccccChhHHHHHhccc---cccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHHHh
Confidence 9999998764 48899986532 2345667778888888776654 34799999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
.+|+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+. .||++++|++ ++++.|+++++.++
T Consensus 137 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~ 210 (251)
T PRK09544 137 NRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH 210 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC
Confidence 99999999999999999999999999988753 689999999999985 7999999965 79999998777654
No 273
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.4e-45 Score=332.41 Aligned_cols=172 Identities=31% Similarity=0.518 Sum_probs=155.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~i 265 (426)
.|+++|++++| +++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.+
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 7999999999999999999999999999999999999999999999999987763 3467789
Q ss_pred EEEecCC---CCC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 266 GLVSQDI---TLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 266 ~~v~Q~~---~lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
+|++|++ .++ ..|++||+.++.. ||||||||++||||
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------------LS~G~~qrl~la~a 118 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL---------------------------------------LSGGNQQKVVLARW 118 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh---------------------------------------cCHHHHHHHHHHHH
Confidence 9999995 355 4699999965310 99999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEE
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i 403 (426)
++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++
T Consensus 119 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 119 LARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999875 4689999999999886 6999999999974
No 274
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.4e-45 Score=337.26 Aligned_cols=197 Identities=22% Similarity=0.320 Sum_probs=169.1
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 789999999975 35999999999999999999999999999999999999999999999999987543 456778999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCC-CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTK-IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
++|++.+++ .|++||+.++..... .+.+++.++++..++.++.++ ...+||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-----------PVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHHHHHhcC
Confidence 999998886 599999976532211 234566777888777765544 4579999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHh-cCEEEEE
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMM-AKRVFLL 398 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~D~i~vl 398 (426)
|+++||||||++||+.+++.+.+.|+++. ++.|+|++||+++.+.. .+|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999999874 46899999999999964 5687776
No 275
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=8.7e-45 Score=335.61 Aligned_cols=195 Identities=26% Similarity=0.355 Sum_probs=168.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++. ++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ..++++++|
T Consensus 1 l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDGR--ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCCc--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 4789999999753 5999999999999999999999999999999999999999999999999876543 456788999
Q ss_pred EecCCCCC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 268 VSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 268 v~Q~~~lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
++|++.++ ..|++||+.+.... ...+++.++++..++.++.++ ...+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~--~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral~~~p 144 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHAD--HSDEQVEEALARVGLNGFEDR-----------PVAQLSAGQQRRVALARLLLSGR 144 (201)
T ss_pred eccccccCCCcCHHHHHHhhccc--ccHHHHHHHHHHcCChhhhcC-----------chhhCCHHHHHHHHHHHHHhcCC
Confidence 99999887 46999999875422 245667777787777655433 35789999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHH-HhcCEEEEE
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETV-MMAKRVFLL 398 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~-~~~D~i~vl 398 (426)
+++||||||++||+.+++.+.+.|+++. +++|+|++||+...+ ..||+++++
T Consensus 145 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 145 PLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999999998875 468999999998766 589999887
No 276
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=7.4e-45 Score=326.08 Aligned_cols=163 Identities=35% Similarity=0.469 Sum_probs=149.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|+++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 4689999999643 46999999999999999999999999999999999999999999999872 57999
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
++|++.+++.|++||+.++ .+.+||||||||++||||++++|+
T Consensus 69 ~~q~~~~~~~tv~~nl~~~-------------------------------------~~~~LS~G~~~rv~laral~~~p~ 111 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP-------------------------------------WDDVLSGGEQQRLAFARLLLHKPK 111 (166)
T ss_pred ECCCCccccccHHHHhhcc-------------------------------------CCCCCCHHHHHHHHHHHHHHcCCC
Confidence 9999998888999999652 136899999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 348 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
++||||||++||+.+++.+.+.++++ ++|+|++||+++....||++++|++|
T Consensus 112 ~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 112 FVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 99999999999999999999999887 58999999999887899999999876
No 277
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=7e-45 Score=343.18 Aligned_cols=192 Identities=32% Similarity=0.452 Sum_probs=160.8
Q ss_pred ceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc-ccHHHHH
Q 014366 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVAENI 283 (426)
Q Consensus 205 l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eni 283 (426)
++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|++|++.+|+ .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999875433 2489999999987 5999999
Q ss_pred cCCCC--CCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCC
Q 014366 284 GYRDL--MTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSA 357 (426)
Q Consensus 284 ~~~~~--~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~ 357 (426)
.++.. ....+. +++.+.++..++.+.. ...+.+||||||||++|||||+.+|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAA-----------DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHH-----------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 76421 111222 2234455555554443 345679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 358 LDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 358 LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
||+.+++.+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|+...+
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999999999874 2689999999999875 7999999999999999886554
No 278
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-45 Score=317.13 Aligned_cols=204 Identities=30% Similarity=0.474 Sum_probs=175.2
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEE
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v 268 (426)
+++++. |.....++|+++||++.+||.++|+||||||||||+|.++-+.+|++|.+++.|++++.++++.+|++|+|+
T Consensus 5 e~kq~~--y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~ 82 (223)
T COG4619 5 ELKQVG--YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYC 82 (223)
T ss_pred HHHHHH--hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHH
Confidence 334443 333335799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccHHHHHcCCCCC--CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 269 SQDITLFSGTVAENIGYRDLM--TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 269 ~Q~~~lf~~ti~eni~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
.|.|.||.+||+||+.|.... ...+.+.....++.+++.+ +.+..+..+||||||||+||+|-|.--|
T Consensus 83 ~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~----------~~L~k~it~lSGGE~QriAliR~Lq~~P 152 (223)
T COG4619 83 AQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPD----------SILTKNITELSGGEKQRIALIRNLQFMP 152 (223)
T ss_pred HcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCch----------hhhcchhhhccchHHHHHHHHHHhhcCC
Confidence 999999999999999885322 1234444455555555544 3455678899999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHH-HHhcCEEEEEeCCEEE
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLET-VMMAKRVFLLDNGKLE 404 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~-~~~~D~i~vl~~G~i~ 404 (426)
+||+||||||+||+.+.+.|.+.|.++. ++..++.|||+.+. ++++|+++-+..|++-
T Consensus 153 ~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 153 KILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 9999999999999999999999998885 35799999999987 6799999999999873
No 279
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.9e-44 Score=342.56 Aligned_cols=213 Identities=22% Similarity=0.307 Sum_probs=168.1
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCccEEEEcCEeCCCCCHHHHh-cc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVDDHDVQNIRLDSLR-RH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~--~p~~G~I~~~g~~i~~~~~~~~r-~~ 264 (426)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+....+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999975 35999999999999999999999999999999999994 69999999999998777665544 57
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCC----CCC---CCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCC-CCCChH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDL----MTK---IDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRG-SSLSGG 331 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~----~~~---~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g-~~LSgG 331 (426)
++|++|++.+++. |..+++.+... ... .+. +.+.+.++..+ +|.++.+ ..+ .+||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~---~~~~~~LS~G 149 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK-------MPEDLLT---RSVNVGFSGG 149 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcC-------CChhhcc---cCCCCCCCHH
Confidence 9999999987754 65555432100 000 010 11112222222 2222222 233 379999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHh--cCEEEEEeCCEEEEecc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMM--AKRVFLLDNGKLEELNR 408 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~--~D~i~vl~~G~i~e~g~ 408 (426)
||||++||||++++|++|||||||++||+.+++.+.+.|+++.+ ++|||++||+++.+.. ||++++|++|++++.|+
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~ 229 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999988754 6899999999999874 89999999999999998
Q ss_pred cccc
Q 014366 409 STLL 412 (426)
Q Consensus 409 ~~~l 412 (426)
++..
T Consensus 230 ~~~~ 233 (248)
T PRK09580 230 FTLV 233 (248)
T ss_pred HHHH
Confidence 7644
No 280
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=6.2e-45 Score=343.51 Aligned_cols=203 Identities=28% Similarity=0.334 Sum_probs=164.9
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC----CccEEEEcCEeCCCCCHHHHhcceEEEecCCC-CC-c-
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----LSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT-LF-S- 276 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p----~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~-lf-~- 276 (426)
+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ...++.++|++|++. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999988653 222357999999985 34 3
Q ss_pred ccHHHHHcCCCCCCCC----CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEee
Q 014366 277 GTVAENIGYRDLMTKI----DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILD 352 (426)
Q Consensus 277 ~ti~eni~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlD 352 (426)
.|+.||+.+....... ..+++.+.++.+++.+. ++..+..+.+||||||||++||||++++|++||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4999998542111111 12234445555444310 13345567899999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 353 EATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 353 Epts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++...+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 217 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNP 217 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999998753 689999999999985 79999999999999999988776543
No 281
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=7.8e-45 Score=369.79 Aligned_cols=225 Identities=26% Similarity=0.354 Sum_probs=184.6
Q ss_pred cEEEEeEEEEeCCCCC--CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC----ccEEEEcCEeCCCCCHHH
Q 014366 187 DVKFCNISFKYADNMP--LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL----SGCILVDDHDVQNIRLDS 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~--~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~----~G~I~~~g~~i~~~~~~~ 260 (426)
-++++|++..|..... .+++||||+|.+||++||||+|||||||+.+.|.|+.++. +|+|.++|.|+..++.++
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975432 5999999999999999999999999999999999999987 899999999998888765
Q ss_pred Hh----cceEEEecCCC-CC-c-ccHHHHHc----CCCCC-CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCC
Q 014366 261 LR----RHVGLVSQDIT-LF-S-GTVAENIG----YRDLM-TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSL 328 (426)
Q Consensus 261 ~r----~~i~~v~Q~~~-lf-~-~ti~eni~----~~~~~-~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~L 328 (426)
+| +.|+|+||+|. .+ + .||.+-|. ..... .....++..+.++.+++.+-... +..+.+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 53 46999999986 34 4 37766663 11100 11123444556666666443332 3356899
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEE
Q 014366 329 SGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405 (426)
Q Consensus 329 SgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e 405 (426)
|||||||+.||+||+.+|++||+||||++||+.++++|++.|+++. .+.++|+||||+..+. .||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999986 3689999999999986 799999999999999
Q ss_pred eccccccccCcchhh
Q 014366 406 LNRSTLLGSNHDSLV 420 (426)
Q Consensus 406 ~g~~~~l~~~~~~l~ 420 (426)
.|+++++++++..=+
T Consensus 236 ~G~~~~i~~~p~hpY 250 (539)
T COG1123 236 TGPTEEILSNPQHPY 250 (539)
T ss_pred ecCHHHHHhccCCcc
Confidence 999999888764433
No 282
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.4e-44 Score=333.89 Aligned_cols=195 Identities=24% Similarity=0.342 Sum_probs=164.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ .++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....++++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 789999999975 359999999999999999999999999999999999999999999999998864 34567788999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
++|++.+++ .|++||+.++... ......+.++++..++.+.. +....+||||||||++||||++++|
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHF-SPGAVGITELCRLFSLEHLI-----------DYPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhc-CcchHHHHHHHHHcCCchhh-----------hCChhhcCHHHHHHHHHHHHHhcCC
Confidence 999999875 6999999875321 11223444555555443332 3345689999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEE
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFL 397 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~v 397 (426)
++|||||||++||+.+.+.+.+.|+++. ++.|+|++||+.+.+..||.-++
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999999874 46899999999999998987543
No 283
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-44 Score=376.00 Aligned_cols=214 Identities=29% Similarity=0.422 Sum_probs=177.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~i 265 (426)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 5899999999975 359999999999999999999999999999999999999999999999999865543 3457789
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCC--CC-CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLM--TK-IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
+|+||++.+|+. |++||+.++... .. .+..+..+ .+.++++.+ |++......+.+||||||||++||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHHH
Confidence 999999988865 999999875321 01 11111111 122334443 44444556778999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccc
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~ 409 (426)
|+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||||++|++|++++.+++
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999875 4689999999999885 7999999999999877654
No 284
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8.7e-45 Score=381.96 Aligned_cols=219 Identities=28% Similarity=0.383 Sum_probs=179.4
Q ss_pred cEEEEeEEEEeCC---------CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC
Q 014366 187 DVKFCNISFKYAD---------NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257 (426)
Q Consensus 187 ~i~~~~v~~~y~~---------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~ 257 (426)
.|+++|++++|+. +.+.+|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 5899999999962 12469999999999999999999999999999999999994 8999999999987655
Q ss_pred HHH---HhcceEEEecCC--CCCc-ccHHHHHcCCCCCC--CCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCC
Q 014366 258 LDS---LRRHVGLVSQDI--TLFS-GTVAENIGYRDLMT--KID----MERVEHTARTANADEFVRTLPQGYNTHIGPRG 325 (426)
Q Consensus 258 ~~~---~r~~i~~v~Q~~--~lf~-~ti~eni~~~~~~~--~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g 325 (426)
... ++++++|+||++ .+|+ .|++||+.++.... ..+ .+++.++++..++.+ .......
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~ 423 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP----------ETRHRYP 423 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH----------HHHhcCC
Confidence 433 467899999998 3665 59999997642110 011 123344455555431 1233456
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCE
Q 014366 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~ 402 (426)
.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||+|||+++.+. .||||++|++|+
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGE 503 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 79999999999999999999999999999999999999999999998753 689999999999886 799999999999
Q ss_pred EEEeccccccccCc
Q 014366 403 LEELNRSTLLGSNH 416 (426)
Q Consensus 403 i~e~g~~~~l~~~~ 416 (426)
+++.|+++++.+++
T Consensus 504 i~~~~~~~~~~~~~ 517 (529)
T PRK15134 504 VVEQGDCERVFAAP 517 (529)
T ss_pred EEEEcCHHHHhcCC
Confidence 99999988876654
No 285
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.9e-44 Score=376.21 Aligned_cols=211 Identities=23% Similarity=0.283 Sum_probs=180.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 48999999999753 5999999999999999999999999999999999999999999999998876666666677899
Q ss_pred EEecCCCC--C-------cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 267 LVSQDITL--F-------SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 267 ~v~Q~~~l--f-------~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
|++|++.+ + ..|++||+.++. ...+++.++++..++.+..++ ...+||||||||++
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~ 145 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV----KDPARCEQLAQQFGITALLDR-----------RFKYLSTGETRKTL 145 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch----hHHHHHHHHHHHcCCHhhhhC-----------CcccCCHHHHHHHH
Confidence 99998753 2 358999876431 123456667777766655444 45799999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ +.|+|++||+++.+. .||++++|++|+++..|+++++.+
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998753 689999999999886 799999999999999998776543
No 286
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=377.60 Aligned_cols=215 Identities=25% Similarity=0.387 Sum_probs=178.4
Q ss_pred EEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhcceEEE
Q 014366 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHVGLV 268 (426)
Q Consensus 190 ~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~i~~v 268 (426)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+++.++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999975 359999999999999999999999999999999999999999999999999876544 3456789999
Q ss_pred ecCCCCCc-ccHHHHHcCCCC-CCC--CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 269 SQDITLFS-GTVAENIGYRDL-MTK--IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 269 ~Q~~~lf~-~ti~eni~~~~~-~~~--~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
||++.+++ .|++||+.++.. ... .+.++..+ .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 99998775 599999987532 111 12221111 123344443 55555667788999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 999999999999999999999999999875 4689999999999885 79999999999999999877653
No 287
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3e-44 Score=333.49 Aligned_cols=197 Identities=24% Similarity=0.329 Sum_probs=167.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . ..++.++
T Consensus 2 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVRGGR--VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACH 76 (207)
T ss_pred EEEEEeEEEEECCe--EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcE
Confidence 37899999999753 59999999999999999999999999999999999999999999999998652 2 2678899
Q ss_pred EEecCCCCC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 267 LVSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 267 ~v~Q~~~lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
|++|++.++ ..|++||+.+........++++.++++..++.++.+. +..+||||||||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-----------PFGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcC-----------ChhhcCHHHHHHHHHHHHHhcC
Confidence 999988776 5699999976432222234556777777777665433 3468999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEeC
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
|+++||||||++||+.+.+.+.+.|+++. ++.|+|++||+++.+.. |+++.++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999999999864 46899999999999887 99988854
No 288
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.2e-44 Score=332.09 Aligned_cols=195 Identities=25% Similarity=0.345 Sum_probs=163.8
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGER--MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 4789999999753 5999999999999999999999999999999999999999999999999987654 356778999
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
++|++.+|+ .|++||+.+.........+++.++++..++.++.+. ...+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL-----------PAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcC-----------ChhhcCHHHHHHHHHHHHHhcCC
Confidence 999998886 599999976432212123456677777777766544 34789999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEE
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFL 397 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~v 397 (426)
+++||||||++||+.+++.+.+.|+++. ++.|+|++||+...+ .|++++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence 9999999999999999999999999874 468999999998433 4566654
No 289
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=7.7e-44 Score=318.54 Aligned_cols=159 Identities=39% Similarity=0.558 Sum_probs=147.3
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhcceE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHVG 266 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~-~~r~~i~ 266 (426)
|+++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..++.++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 4789999999753 599999999999999999999999999999999999999999999999999877653 4567899
Q ss_pred EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
|++| ||||||||++||||++++|
T Consensus 79 ~~~q---------------------------------------------------------LS~G~~qrl~laral~~~p 101 (163)
T cd03216 79 MVYQ---------------------------------------------------------LSVGERQMVEIARALARNA 101 (163)
T ss_pred EEEe---------------------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 9999 9999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEE
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e 405 (426)
+++||||||++||+.+++.+.+.|+++. ++.|+|++||+++.+. .||++++|++|++++
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999885 4689999999999875 699999999999875
No 290
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.1e-44 Score=334.29 Aligned_cols=198 Identities=23% Similarity=0.308 Sum_probs=165.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNEE--PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCCc--eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 59999999999753 599999999999999999999999999999999999999999999999988642 3456799
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCC-CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKI-DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
|++|++.+++. |++||+.+....... ..+...+.++..++.+. .+....+||||||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-----------EDTLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-----------ccCChhhCCHHHHHHHHHHHHHhc
Confidence 99999998875 999999764221111 12333444554444333 344567999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeC
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDN 400 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~ 400 (426)
+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998864 4689999999999885 7999999864
No 291
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-44 Score=383.82 Aligned_cols=221 Identities=26% Similarity=0.334 Sum_probs=177.8
Q ss_pred cEEEEeEEEEeCCC--CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC----------
Q 014366 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ---------- 254 (426)
Q Consensus 187 ~i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~---------- 254 (426)
.|+++|++++|+.. ..++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 59999999999642 236999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-cceEEEecCC--CCCc-ccHHHHHcCCCCC-CCCCH----HHHHHHHHHhchHHHHHhcCCCcccccC
Q 014366 255 NIRLD---SLR-RHVGLVSQDI--TLFS-GTVAENIGYRDLM-TKIDM----ERVEHTARTANADEFVRTLPQGYNTHIG 322 (426)
Q Consensus 255 ~~~~~---~~r-~~i~~v~Q~~--~lf~-~ti~eni~~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~ 322 (426)
..+.. .+| +.|+||+|+| .+++ .||+||+.++... ...+. +++.++++.+++.+. +..+.
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence 12222 233 4799999998 5776 5999999864211 01122 234444555444210 12334
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEe
Q 014366 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLD 399 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~ 399 (426)
....+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++. + ++|||+|||+++.+. .||||++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 5668999999999999999999999999999999999999999999999985 3 689999999999885 799999999
Q ss_pred CCEEEEeccccccccC
Q 014366 400 NGKLEELNRSTLLGSN 415 (426)
Q Consensus 400 ~G~i~e~g~~~~l~~~ 415 (426)
+|++++.|+++++..+
T Consensus 244 ~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 244 QGEAVETGSVEQIFHA 259 (623)
T ss_pred CCeecccCCHHHhhcC
Confidence 9999999988776543
No 292
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.9e-44 Score=373.95 Aligned_cols=216 Identities=25% Similarity=0.393 Sum_probs=176.8
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeCCCCCHHH-Hhcc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQNIRLDS-LRRH 264 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p--~~G~I~~~g~~i~~~~~~~-~r~~ 264 (426)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++.
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999975 3599999999999999999999999999999999999987 7999999999998766544 4567
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCCC--C--CCHHHHHHHHHHhchHHHHHhcCCCccccc-CCCCCCCChHHHHHHHH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLMT--K--IDMERVEHTARTANADEFVRTLPQGYNTHI-GPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~~--~--~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~-~~~g~~LSgGqkQRl~i 338 (426)
++||||++.+|+. |++||+.++.... . .+.++..+ .+.++++.+ |++... .....+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~i 152 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVEI 152 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHHH
Confidence 9999999988864 9999998753211 0 11111111 122333333 333322 34467999999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+. .||+|++|++|++++.|+++.+
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999999999875 4689999999999886 6999999999999999887654
No 293
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.6e-44 Score=375.82 Aligned_cols=220 Identities=29% Similarity=0.372 Sum_probs=178.2
Q ss_pred cEEEEeEEEEeCCC--CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCCCHH
Q 014366 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNIRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~~~~~ 259 (426)
.|+++|++++|+++ ..++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999742 23699999999999999999999999999999999999987 799999999998776543
Q ss_pred H---Hh-cceEEEecCCC--CCc-ccHHHHHcCCCC-CCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCC
Q 014366 260 S---LR-RHVGLVSQDIT--LFS-GTVAENIGYRDL-MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSS 327 (426)
Q Consensus 260 ~---~r-~~i~~v~Q~~~--lf~-~ti~eni~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~ 327 (426)
+ +| ++++|+||++. +++ .|+++|+.+... ....+ .+++.++++.+++.+.. ........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence 2 33 57999999985 444 489999863210 00111 23445556665553311 012335679
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEE
Q 014366 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLE 404 (426)
Q Consensus 328 LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~ 404 (426)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .+.|||+|||+++.+. .||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999874 2689999999999886 79999999999999
Q ss_pred Eecccccccc
Q 014366 405 ELNRSTLLGS 414 (426)
Q Consensus 405 e~g~~~~l~~ 414 (426)
+.|+++++.+
T Consensus 237 ~~g~~~~~~~ 246 (529)
T PRK15134 237 EQNRAATLFS 246 (529)
T ss_pred EeCCHHHHhh
Confidence 9998876644
No 294
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-42 Score=334.00 Aligned_cols=386 Identities=23% Similarity=0.268 Sum_probs=285.7
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHH--HHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMC--ESARFRRLAH 80 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~--~~~~~~~~~~ 80 (426)
+++.|+||.+.++.++.+.+.++...+...+..+.....++...++.+..+..+.|.++++....-.+ ..+.|....+
T Consensus 140 aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~ 219 (546)
T COG4615 140 AYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQ 219 (546)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchH
Confidence 46789999999999888888888888888888899999999999999999999999999997543221 1122222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 81 SDLCELLKKRKMKALIPQTVQLIYFGALFILCGGSLL-VSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAI 159 (426)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-v~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~ 159 (426)
...+...+...+......+.+++.++. +....|+ ...++-+.....++++...++-.|+.++....+.+..+.+|.
T Consensus 220 ~~r~~~~~~n~f~~la~~~~ni~l~~l---IGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~ 296 (546)
T COG4615 220 EYRHHIIRANTFHLLAVNWSNIMLLGL---IGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAF 296 (546)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Confidence 111111111111111111222211111 1111112 223333444445566666677889999999999999999999
Q ss_pred HHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 160 ERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 160 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++.++-..|+.. +-+.+.+.+ .-..|+++||.|.|++.. .-+..||++|++||++-|+|.|||||||++++|.|+|
T Consensus 297 ~kiakle~~~~~a-~~~~~q~~p-~~~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~ 373 (546)
T COG4615 297 NKIAKLELAPYKA-DFPRPQAFP-DWKTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY 373 (546)
T ss_pred HHHHHhhcCCccc-cCCCCCcCC-cccceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc
Confidence 9999875433221 111111122 235799999999998753 4688999999999999999999999999999999999
Q ss_pred CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc
Q 014366 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (426)
Q Consensus 240 ~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 319 (426)
+|++|+|++||++++.-+++++|+-++-||.|.+||+.++- +....+++.+...++...+.+...-....+
T Consensus 374 ~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~-------~e~~as~q~i~~~LqrLel~~ktsl~d~~f-- 444 (546)
T COG4615 374 QPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG-------PEGKASPQLIEKWLQRLELAHKTSLNDGRF-- 444 (546)
T ss_pred CCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC-------CccCCChHHHHHHHHHHHHhhhhcccCCcc--
Confidence 99999999999999999999999999999999999986541 112246777888888777766543322111
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHH-c-CCceEEEeccChHHHHhcCEEEE
Q 014366 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL-L-GHHTVLVIAHHLETVMMAKRVFL 397 (426)
Q Consensus 320 ~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~-~~~tvi~itH~~~~~~~~D~i~v 397 (426)
....||.|||+|+|+--|++-+.||+++||=-+--||.-++.+.+.+..+ + .||||+.||||-.....|||++.
T Consensus 445 ----s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~ 520 (546)
T COG4615 445 ----SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLE 520 (546)
T ss_pred ----cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHH
Confidence 12579999999999999999999999999999999999999998887544 3 48999999999999999999999
Q ss_pred EeCCEEEEec
Q 014366 398 LDNGKLEELN 407 (426)
Q Consensus 398 l~~G~i~e~g 407 (426)
|++|+++|.-
T Consensus 521 ~~~G~~~e~t 530 (546)
T COG4615 521 MRNGQLSELT 530 (546)
T ss_pred HhcCceeecc
Confidence 9999999864
No 295
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.4e-41 Score=350.06 Aligned_cols=377 Identities=19% Similarity=0.216 Sum_probs=296.7
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHH
Q 014366 7 VISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCEL 86 (426)
Q Consensus 7 ~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 86 (426)
-+...+..++++-+++.-++..++++++.+.+.+.....+.+...+...-++.+.|-.++.|+.+.++.++.........
T Consensus 203 ~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~ 282 (604)
T COG4178 203 GIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNW 282 (604)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666678899999999999999999999999999999999999999999988887766554433
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014366 87 LKKRKMKALIPQTVQLIYF-GALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDL 165 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~ 165 (426)
.+......-+..+...... ..++-+.+++-....|+++.|.++.....+..+...+..+...+..++.-++...|+.++
T Consensus 283 ~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f 362 (604)
T COG4178 283 RRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEF 362 (604)
T ss_pred HHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 2222211111111111111 122223344555678999999999999999999999999999999999999999999988
Q ss_pred hcCc------ccccCCCCC-CCC-CCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 014366 166 TKFK------SKVIEKPDA-VSL-DHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 166 l~~~------~~~~~~~~~-~~~-~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
.+.- ++....... ... ......|+++|++..-|++. ..+++.||++++||.+-|.||||||||||+|.|+|
T Consensus 363 ~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaG 441 (604)
T COG4178 363 RQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAG 441 (604)
T ss_pred HHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 6321 111111000 000 00146799999999998764 79999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCc
Q 014366 238 LYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGY 317 (426)
Q Consensus 238 ~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~ 317 (426)
+.|--+|+|.+-. -..+-|+||.|++..||.||-++|++..++.+++++.+++.++++.++++++.+ .
T Consensus 442 LWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~ 509 (604)
T COG4178 442 LWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-E 509 (604)
T ss_pred cCccCCCceecCC-----------CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-c
Confidence 9999999987531 134789999999999999999999887655889999999999999999998753 2
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEE
Q 014366 318 NTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFL 397 (426)
Q Consensus 318 ~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~v 397 (426)
+ +=...||+|||||+++||.++++|++++|||+||+||++++..+.+.+++...+.|+|-|+||.......++.+-
T Consensus 510 ~----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~ 585 (604)
T COG4178 510 D----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLE 585 (604)
T ss_pred C----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhhee
Confidence 2 234689999999999999999999999999999999999999999999998788999999999998887776665
Q ss_pred EeC
Q 014366 398 LDN 400 (426)
Q Consensus 398 l~~ 400 (426)
+.+
T Consensus 586 l~~ 588 (604)
T COG4178 586 LLD 588 (604)
T ss_pred ecc
Confidence 543
No 296
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-43 Score=356.96 Aligned_cols=214 Identities=34% Similarity=0.447 Sum_probs=181.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh-cce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR-RHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r-~~i 265 (426)
-++++|++++|++- ++|+++||++++||++||+|+||||||||+|+|+|.|+|++|+|.+||++..-.++.+-+ ..|
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 48899999999864 699999999999999999999999999999999999999999999999999877776654 569
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCC----CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTK----IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
+.|+||..|++. ||.|||.+++.... .+..+..+.++ +.++.+ |++........+||.||||.|+|||
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~-----~~l~~l--g~~~~~~~~v~~LsiaqrQ~VeIAr 158 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARL--GLDIDPDTLVGDLSIAQRQMVEIAR 158 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH-----HHHHHc--CCCCChhhhhhhCCHHHHHHHHHHH
Confidence 999999999865 99999988764322 23333332222 233333 2211245567899999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~ 409 (426)
|+..+++++|||||||+|+....+.+.+.+++++ ++.++|+||||++++. .||||.||+||+.+..++.
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 9999999999999999999999999999999997 5789999999999885 7999999999999987763
No 297
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.2e-43 Score=333.25 Aligned_cols=201 Identities=30% Similarity=0.390 Sum_probs=161.3
Q ss_pred EEEEeEEEEeCCC-----CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEc--CE--eCCCCCH
Q 014366 188 VKFCNISFKYADN-----MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD--DH--DVQNIRL 258 (426)
Q Consensus 188 i~~~~v~~~y~~~-----~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~--g~--~i~~~~~ 258 (426)
|+++|++++|+.. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1369999999999999999999999999999999999999999999998 42 5554444
Q ss_pred HH---H-hcceEEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCC
Q 014366 259 DS---L-RRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329 (426)
Q Consensus 259 ~~---~-r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LS 329 (426)
.. + ++.++|+||++.+++. |++||+.+.......+ .+++.++++..++.+.. ....+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL----------WHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh----------hhCCcccCC
Confidence 32 2 4579999999998864 9999997532111111 12333344444443221 234568999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEE
Q 014366 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLL 398 (426)
Q Consensus 330 gGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl 398 (426)
||||||++|||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||+++.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999999875 3689999999999885 79999876
No 298
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-44 Score=373.60 Aligned_cols=220 Identities=24% Similarity=0.350 Sum_probs=178.2
Q ss_pred cEEEEeEEEEeCC-CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-CCccEEEEcCEeCCCCCH-HHHhc
Q 014366 187 DVKFCNISFKYAD-NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-PLSGCILVDDHDVQNIRL-DSLRR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~-~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-p~~G~I~~~g~~i~~~~~-~~~r~ 263 (426)
.|+++|++++|+. +..++++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...+. ..+++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5999999999953 12459999999999999999999999999999999999998 599999999999865443 34567
Q ss_pred ceEEEecCC---CCCc-ccHHHHHcCCCC--CCC---CCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHH
Q 014366 264 HVGLVSQDI---TLFS-GTVAENIGYRDL--MTK---IDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQR 333 (426)
Q Consensus 264 ~i~~v~Q~~---~lf~-~ti~eni~~~~~--~~~---~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqk 333 (426)
.++|++|++ .+|+ .|+.||+.++.. ... .+.++. ...+.++++.+ |++ ........+||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 3664 599999986421 100 011111 11233444444 443 245567789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|||++||+++.+. .|||+++|++|+++..|++++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999999875 4789999999999885 799999999999999998877
Q ss_pred cc
Q 014366 412 LG 413 (426)
Q Consensus 412 l~ 413 (426)
+.
T Consensus 492 ~~ 493 (506)
T PRK13549 492 LT 493 (506)
T ss_pred CC
Confidence 63
No 299
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.7e-44 Score=374.55 Aligned_cols=220 Identities=24% Similarity=0.422 Sum_probs=174.6
Q ss_pred cEEEEeEEEEeCC---CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEc-CEe---CCCCC--
Q 014366 187 DVKFCNISFKYAD---NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD-DHD---VQNIR-- 257 (426)
Q Consensus 187 ~i~~~~v~~~y~~---~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~-g~~---i~~~~-- 257 (426)
.|+++|++++|++ +..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999963 22469999999999999999999999999999999999999999999996 643 33222
Q ss_pred -HHHHhcceEEEecCCCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 258 -LDSLRRHVGLVSQDITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 258 -~~~~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
...++++++|+||++.+|+ .|++||+.+.... ... .+++.++++..++.+. ..+...+....+||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEG 431 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHH
Confidence 1245677999999998886 4999999753111 111 1223344444443210 0001234566899999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~ 408 (426)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. + +.|||+|||+++.+. .|||+++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999874 3 689999999999886 799999999999999988
Q ss_pred ccccc
Q 014366 409 STLLG 413 (426)
Q Consensus 409 ~~~l~ 413 (426)
++++.
T Consensus 512 ~~~~~ 516 (520)
T TIGR03269 512 PEEIV 516 (520)
T ss_pred HHHHH
Confidence 76543
No 300
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.2e-43 Score=372.68 Aligned_cols=213 Identities=23% Similarity=0.412 Sum_probs=172.3
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCccEEEEc----------------
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLSGCILVD---------------- 249 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~--~p~~G~I~~~---------------- 249 (426)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999964 35999999999999999999999999999999999996 7999999997
Q ss_pred -------CEeCC-------CCC---HHHHhcceEEEecC-CCCCc-ccHHHHHcCCCCCCCCC----HHHHHHHHHHhch
Q 014366 250 -------DHDVQ-------NIR---LDSLRRHVGLVSQD-ITLFS-GTVAENIGYRDLMTKID----MERVEHTARTANA 306 (426)
Q Consensus 250 -------g~~i~-------~~~---~~~~r~~i~~v~Q~-~~lf~-~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l 306 (426)
|.++. ..+ ...+|+.++|+||+ +.+|+ .|++||+.++......+ .+++.++++.+++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 32221 111 12456789999998 56776 59999997642111112 1234455555555
Q ss_pred HHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEecc
Q 014366 307 DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAH 384 (426)
Q Consensus 307 ~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH 384 (426)
.+.. .....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. + ++|||+|||
T Consensus 159 ~~~~-----------~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 159 SHRI-----------THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred hhhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 5444 34557999999999999999999999999999999999999999999999874 3 689999999
Q ss_pred ChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 385 HLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 385 ~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+++.+. .||+|++|++|++++.|+++++.
T Consensus 228 d~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 257 (520)
T TIGR03269 228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVV 257 (520)
T ss_pred CHHHHHHhcCEEEEEeCCEEeeecCHHHHH
Confidence 999986 79999999999999988876543
No 301
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-43 Score=370.87 Aligned_cols=212 Identities=17% Similarity=0.328 Sum_probs=173.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~i 265 (426)
.|+++|+++.|. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+. ..+++.+
T Consensus 265 ~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 265 VFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred EEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 599999998763 38999999999999999999999999999999999999999999999998865443 3456789
Q ss_pred EEEecCC---CCCc-ccHHHHHcCCCCCC--------C-CCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChH
Q 014366 266 GLVSQDI---TLFS-GTVAENIGYRDLMT--------K-IDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGG 331 (426)
Q Consensus 266 ~~v~Q~~---~lf~-~ti~eni~~~~~~~--------~-~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgG 331 (426)
+|+||++ .+|+ .|++||+.++.... . ...... ...+.+.++.+ |+. ........+||||
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG 413 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--ALKCHSVNQNITELSGG 413 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CCCCCCccCccccCChH
Confidence 9999984 5675 49999998753210 0 011110 11123344443 453 3456677899999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~ 409 (426)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. ++.|||+|||+++.+. .|||+++|++|++++.++.
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999999999999999999999999874 4789999999999885 7999999999999988865
No 302
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.1e-43 Score=325.18 Aligned_cols=176 Identities=34% Similarity=0.490 Sum_probs=146.6
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC--CCHHHHhcceEEEecCC--CCCcc
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN--IRLDSLRRHVGLVSQDI--TLFSG 277 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~--~~~~~~r~~i~~v~Q~~--~lf~~ 277 (426)
+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....+++.++|+||++ .+|+.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 469999999999999999999999999999999999999999999999999852 22345677899999998 46778
Q ss_pred cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeec
Q 014366 278 TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDE 353 (426)
Q Consensus 278 ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDE 353 (426)
|++||+.++......+. +++.++++..++.++.++ ...+||||||||++|||||+.+|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRER-----------PTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987421111222 234555666666555444 457999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHH
Q 014366 354 ATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLET 388 (426)
Q Consensus 354 pts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~ 388 (426)
||++||+.+++.+.+.|+++. +++|+|++||+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999999875 46899999999864
No 303
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.5e-43 Score=405.00 Aligned_cols=218 Identities=25% Similarity=0.394 Sum_probs=186.7
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++||+++|+++.+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+.|+.+
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 3699999999996433569999999999999999999999999999999999999999999999999864 455678899
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
||+||++.+|+. |++||+.++......+. +++.+.++..++. ...+....+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~-----------~~~~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH-----------HKRNEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHHHHHHHH
Confidence 999999999865 99999987432222222 2344445554444 4445566899999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||+.+|+++||||||||||+.+++.+.+.|+++++++|||++||+++.+. .||||++|++|+++..|+++.|.++
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999999999999999999999999999999877899999999999986 7999999999999999998877654
No 304
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-43 Score=312.66 Aligned_cols=208 Identities=27% Similarity=0.409 Sum_probs=175.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.+.+++++.+|++....+|+|+|++|.+||.++++||||||||||+++++|+.+|+.|+|.+||.++..-.. .-|
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 466789999998765669999999999999999999999999999999999999999999999999876432 248
Q ss_pred EEecCCCCCc-ccHHHHHcCCCCCCCCCHHH----HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFS-GTVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
+|||++.|++ .|+.||+.||......++.+ ..+.+..+++.++- .....+||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~-----------~~~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAE-----------HKYIWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccccc-----------ccceEeecchHHHHHHHHHH
Confidence 9999999986 59999999986655544432 23334444444433 33568999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeC--CEEEEecccc
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDN--GKLEELNRST 410 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~--G~i~e~g~~~ 410 (426)
|..+|++|+||||+++||.-+++.+++.|-++. .++.+++|||++++.- .++|++||+. |+|++.-+++
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999999999999999999998874 3789999999998875 7999999985 7998875554
No 305
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-43 Score=332.24 Aligned_cols=188 Identities=34% Similarity=0.467 Sum_probs=165.9
Q ss_pred cEEEEeEEEEeCCCC-------CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH
Q 014366 187 DVKFCNISFKYADNM-------PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~-------~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~ 259 (426)
-++++|+++.|+... ..+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|+++|+++..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 488999999997432 26899999999999999999999999999999999999999999999999977654
Q ss_pred HHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHH-HHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 260 SLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADE-FVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
.....+++.+.++.+++.+ ++.+.| .+||||||||++|
T Consensus 82 ------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~I 120 (268)
T COG4608 82 ------------------------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGI 120 (268)
T ss_pred ------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHH
Confidence 1112456788888888754 566655 7999999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||||+.+|+++++|||+|+||...+.++.+.|.++.+ +.|.++||||++.++ .||||.||..|+|+|.|+.++++.+
T Consensus 121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~ 200 (268)
T COG4608 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200 (268)
T ss_pred HHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhC
Confidence 9999999999999999999999999999999998863 679999999999998 6999999999999999999888876
Q ss_pred cc
Q 014366 416 HD 417 (426)
Q Consensus 416 ~~ 417 (426)
+.
T Consensus 201 p~ 202 (268)
T COG4608 201 PL 202 (268)
T ss_pred CC
Confidence 53
No 306
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=4.9e-43 Score=329.29 Aligned_cols=195 Identities=23% Similarity=0.316 Sum_probs=156.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
+.++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~----- 90 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----G----- 90 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----c-----
Confidence 678889999976 3699999999999999999999999999999999999999999999999875311 1
Q ss_pred EecCCCC-CcccHHHHHcCCCCCCCCCHH----HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 268 VSQDITL-FSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 268 v~Q~~~l-f~~ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+...+ .+.|++||+.++......+.+ ++.++++..++ +........+||||||||++||||+
T Consensus 91 --~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~laral 157 (224)
T cd03220 91 --LGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSEL-----------GDFIDLPVKTYSSGMKARLAFAIAT 157 (224)
T ss_pred --ccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHHHHHHHHHH
Confidence 11222 246999999764321111222 22333333333 3333445679999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
+++|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 158 ~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999874 3589999999999885 79999999999998765
No 307
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-43 Score=303.34 Aligned_cols=216 Identities=31% Similarity=0.475 Sum_probs=184.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC--CCCC----HHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV--QNIR----LDS 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i--~~~~----~~~ 260 (426)
+|+++|++|.|+.. .+|.||+|+-+.||.+.+.||||+|||||++.|.-+.-|.+|+..+.|... +..+ ..+
T Consensus 2 sirv~~in~~yg~~--q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEcccccccccc--hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 58999999999865 599999999999999999999999999999999999999999999988643 3222 346
Q ss_pred HhcceEEEecCCCCCcc-cHHHHHcCCC-CCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 261 LRRHVGLVSQDITLFSG-TVAENIGYRD-LMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~-ti~eni~~~~-~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
+|+.+|+|||..+|++. ||.||+.-.. ...+.+ ..+..+.+++..+.++.+++| -.|||||+|
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqqq 148 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQ 148 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchhh
Confidence 89999999999999965 9999985321 111122 234566778888888888877 589999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
|+||||||+.+|++|++||||++|||+-...+.+.|+++.+ +-|-++|||..+..+ .|.+|+.|++|+|+|.|+..-+
T Consensus 149 rvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred hHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 99999999999999999999999999999999999999975 689999999999986 6999999999999999987765
Q ss_pred ccC
Q 014366 413 GSN 415 (426)
Q Consensus 413 ~~~ 415 (426)
-+.
T Consensus 229 t~p 231 (242)
T COG4161 229 TEP 231 (242)
T ss_pred cCc
Confidence 443
No 308
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=371.93 Aligned_cols=216 Identities=33% Similarity=0.464 Sum_probs=183.1
Q ss_pred cEEEEeEEEEeCCC--CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH---
Q 014366 187 DVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL--- 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~--- 261 (426)
.|+++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 58999999999642 2469999999999999999999999999999999999999999999999999988776553
Q ss_pred -hcceEEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 262 -RRHVGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 262 -r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
++.++|+||++.+|+. |+.||+.+.......+ +++..+.++.+ |+++.++..+.+|||||+||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~l-----------gl~~~~~~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRL-----------GLEDRVEYQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC-----------CChhhhcCCcccCCHHHHHH
Confidence 5689999999999964 9999997632111111 12233334444 44444555667999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
++|||||+++|+++||||||++||+.+++.+.+.++++. +++|+|++||+++.+..|||+++|++|++++.|++++..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999999999875 478999999999988889999999999999999987654
No 309
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=5e-43 Score=329.03 Aligned_cols=189 Identities=32% Similarity=0.449 Sum_probs=157.9
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCC---CcccHHHHHcCC
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL---FSGTVAENIGYR 286 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~l---f~~ti~eni~~~ 286 (426)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+++++|+||++.+ ++.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998753 346789999999876 346999999764
Q ss_pred CCC-------C-CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCC
Q 014366 287 DLM-------T-KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358 (426)
Q Consensus 287 ~~~-------~-~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~L 358 (426)
... . ....+++.++++..++.++. .....+||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELA-----------DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 210 0 01123345556665554443 3355789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 359 DSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 359 D~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
|+.+++.+.+.|+++. +++|+|++||+++.+. .||+++++ +|++++.|+++++.++
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999999999999875 4789999999999875 79999999 8999999998877654
No 310
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=8.4e-43 Score=364.65 Aligned_cols=219 Identities=23% Similarity=0.354 Sum_probs=175.3
Q ss_pred cEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-CccEEEEcCEeCCCCCH-HHHhc
Q 014366 187 DVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVDDHDVQNIRL-DSLRR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~I~~~g~~i~~~~~-~~~r~ 263 (426)
.|+++|++++|+.+ ...+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+. ..+++
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 59999999999421 23599999999999999999999999999999999999985 89999999999865433 45678
Q ss_pred ceEEEecCC---CCCc-ccHHHHHcCCCC--CC---CCCHHHHHHHHHHhchHHHHHhcCCCccc-ccCCCCCCCChHHH
Q 014366 264 HVGLVSQDI---TLFS-GTVAENIGYRDL--MT---KIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGGQR 333 (426)
Q Consensus 264 ~i~~v~Q~~---~lf~-~ti~eni~~~~~--~~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~~~g~~LSgGqk 333 (426)
+++|+||++ .+|+ .|++||+.++.. .. ...... ....+.++++.+ |+.. ........||||||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAA-----ELQIIGSAIQRL--KVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHH-----HHHHHHHHHHhc--CccCCCccCccccCCHHHH
Confidence 899999996 4665 599999987521 00 011111 011123334443 3432 34556789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. ++.|||++||+++.+. .|||+++|++|+++..++.++
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998875 4689999999999886 799999999999998776544
Q ss_pred c
Q 014366 412 L 412 (426)
Q Consensus 412 l 412 (426)
+
T Consensus 490 ~ 490 (500)
T TIGR02633 490 L 490 (500)
T ss_pred C
Confidence 3
No 311
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-42 Score=333.75 Aligned_cols=205 Identities=21% Similarity=0.316 Sum_probs=166.7
Q ss_pred cEEEEeEEEEeCC------------------CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE
Q 014366 187 DVKFCNISFKYAD------------------NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248 (426)
Q Consensus 187 ~i~~~~v~~~y~~------------------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~ 248 (426)
+|+++||++.|.. ..+++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 5778888777643 1235899999999999999999999999999999999999999999999
Q ss_pred cCEeCCCCCHHHHhcceEEEecCCCCCc-ccHHHHHcCCCCCCCCCHHHHH----HHHHHhchHHHHHhcCCCcccccCC
Q 014366 249 DDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVAENIGYRDLMTKIDMERVE----HTARTANADEFVRTLPQGYNTHIGP 323 (426)
Q Consensus 249 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~lp~g~~t~~~~ 323 (426)
+|. +++++|++.+++ .|++||+.++......+.++.. .+++..+ ++..+..
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~ 139 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSE-----------LGEFIYQ 139 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CchhhcC
Confidence 984 456788877664 5999999764211122233222 2333333 3344455
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCC
Q 014366 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNG 401 (426)
Q Consensus 324 ~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G 401 (426)
.+.+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+. .||+|++|++|
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 678999999999999999999999999999999999999999999998875 4689999999999886 69999999999
Q ss_pred EEEEeccccccccC
Q 014366 402 KLEELNRSTLLGSN 415 (426)
Q Consensus 402 ~i~e~g~~~~l~~~ 415 (426)
++++.|+++++..+
T Consensus 220 ~i~~~g~~~~~~~~ 233 (264)
T PRK13546 220 KLKDYGELDDVLPK 233 (264)
T ss_pred EEEEeCCHHHHHHH
Confidence 99999988766554
No 312
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-44 Score=315.12 Aligned_cols=216 Identities=27% Similarity=0.421 Sum_probs=193.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++||+++|++. .+++++|++|++|.+++++||||||||||+.+++++.++++|+|+++|.++.+.+.+++.++++.
T Consensus 2 I~i~nv~K~y~~~--~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 2 ITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred eeehhhhHhhCCE--EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 7899999999864 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCC-cccHHHHHcCCCCC------CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 268 VSQDITLF-SGTVAENIGYRDLM------TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 268 v~Q~~~lf-~~ti~eni~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
+-|+..+- ..||+|-+.||+.. ...+...+.++++..++.+.-++. -.+||||||||.-||.
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dry-----------Ld~LSGGQrQRAfIAM 148 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY-----------LDELSGGQRQRAFIAM 148 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHh-----------HHhcccchhhhhhhhe
Confidence 99999986 45999999998532 122345567788877777665553 3589999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
.++++.+.++||||.++||......+++.|+++.+ ++|+++|-||.+.+. ++|+|+-|++|+++.+|+|+++.+.+
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~ 227 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPE 227 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHH
Confidence 99999999999999999999999999999998854 699999999999996 89999999999999999999988654
No 313
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-42 Score=336.02 Aligned_cols=223 Identities=32% Similarity=0.397 Sum_probs=187.7
Q ss_pred ccEEEEeEEEEeCCCC---------CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC
Q 014366 186 GDVKFCNISFKYADNM---------PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI 256 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~---------~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~ 256 (426)
.-++.+||...|+-+. ..+++++||++++||.+||||+||||||||-..|+++.+++ |+|.++|+++..+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 4589999999986321 24799999999999999999999999999999999999876 9999999999988
Q ss_pred CHHH---HhcceEEEecCCC--CCc-ccHHHHHcCCCCCC--CC----CHHHHHHHHHHhchHHHHHhcCCCcccccCCC
Q 014366 257 RLDS---LRRHVGLVSQDIT--LFS-GTVAENIGYRDLMT--KI----DMERVEHTARTANADEFVRTLPQGYNTHIGPR 324 (426)
Q Consensus 257 ~~~~---~r~~i~~v~Q~~~--lf~-~ti~eni~~~~~~~--~~----~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~ 324 (426)
+.++ +|+++-+|||||+ |-+ .||.+-|.-|...+ .. .++++.++++.+|++.-.. .+.
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r----------~RY 423 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR----------NRY 423 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh----------hcC
Confidence 8765 5788999999997 433 58888886543211 11 2355677777777764322 234
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCC
Q 014366 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNG 401 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G 401 (426)
+.++|||||||+|||||++-+|++++||||||+||..-+..|.+.|+++.+ +-+-++||||+..++ .||+|+||++|
T Consensus 424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~G 503 (534)
T COG4172 424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG 503 (534)
T ss_pred CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCC
Confidence 579999999999999999999999999999999999999999999999853 579999999999997 79999999999
Q ss_pred EEEEeccccccccCcchh
Q 014366 402 KLEELNRSTLLGSNHDSL 419 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~~~l 419 (426)
+|||+|+.+.++.+++.-
T Consensus 504 kiVE~G~~~~if~~P~~~ 521 (534)
T COG4172 504 KIVEQGPTEAVFANPQHE 521 (534)
T ss_pred EEeeeCCHHHHhcCCCcH
Confidence 999999999999887543
No 314
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-42 Score=319.72 Aligned_cols=189 Identities=20% Similarity=0.314 Sum_probs=158.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ +.++ ++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ++.++|
T Consensus 2 l~~~~l~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred eEEEEeeEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 789999999964 2345 599999999999999999999999999999999999999999999876532 346999
Q ss_pred EecCCCC-CcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 268 VSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 268 v~Q~~~l-f~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
++|++.+ +..|++||+.+...... ..+++..+++.+++.++.+ ..+.+||||||||++||||++++|
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYN-SAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcc-cHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcCC
Confidence 9998865 56799999987532211 2445566667766655543 356799999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHH-cCCceEEEeccChHHHHhcCEE
Q 014366 347 SVLILDEATSALDSRSELLVRQAVDRL-LGHHTVLVIAHHLETVMMAKRV 395 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~~~~~~~~D~i 395 (426)
+++||||||++||+.+++.+.+.+++. .+++|+|++||+++.++.||-+
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 999999999999999999999999754 3568999999999999988876
No 315
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.3e-42 Score=399.05 Aligned_cols=218 Identities=19% Similarity=0.309 Sum_probs=186.1
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++|++++|+++.+.+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|+++.. +..+.|++|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 4599999999997533469999999999999999999999999999999999999999999999999864 345677889
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
||+||++.+++ .|++||+.+.....+.+. +.+.+.++.+++.++.++ ...+||||||||++|||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk-----------~~~~LSGGqKqRLslA~ 2083 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADR-----------LAGTYSGGNKRKLSTAI 2083 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcC-----------ChhhCCHHHHHHHHHHH
Confidence 99999999886 599999976322222222 233445666666555444 45799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||+.+|++++|||||+|||+.+++.+++.|+++. +++|||++||++++++ .||||++|++|+++..|+++++.++
T Consensus 2084 ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2084 ALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999999999874 5789999999999986 7999999999999999999887654
No 316
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-43 Score=324.60 Aligned_cols=198 Identities=29% Similarity=0.452 Sum_probs=175.9
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHHhcceEEEecCCCCCcc-cHH
Q 014366 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDSLRRHVGLVSQDITLFSG-TVA 280 (426)
Q Consensus 206 ~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~----~~~~r~~i~~v~Q~~~lf~~-ti~ 280 (426)
=++||+.+.-.++||-|+||||||||+|+|+|+.+|++|.|.+||.-+.+.. ..--+++|||||||..||+. ||+
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 3689999886799999999999999999999999999999999998775432 23346789999999999965 999
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCH
Q 014366 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (426)
Q Consensus 281 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~ 360 (426)
.|++||... .+.++..+++...++.+.+++.| .+|||||||||||+|||+.+|++|+||||.|+||.
T Consensus 95 gNL~YG~~~--~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 95 GNLRYGMWK--SMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred cchhhhhcc--cchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence 999999753 24667888899999999998887 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 361 RSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 361 ~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
..+++++-.|+++.+ +-.|+.|||.++++. .||+|++|++|++...|+.++..+..
T Consensus 162 ~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 162 PRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred chhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 999999999999875 358999999998875 79999999999999999988776553
No 317
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.9e-42 Score=361.99 Aligned_cols=213 Identities=23% Similarity=0.391 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~-~~r~~i 265 (426)
.++++|+++ ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+++
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred EEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 589999984 279999999999999999999999999999999999999999999999998766543 456789
Q ss_pred EEEecCC---CCCc-ccHHHHHcCCCCC--CC----CCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHHH
Q 014366 266 GLVSQDI---TLFS-GTVAENIGYRDLM--TK----IDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQ 334 (426)
Q Consensus 266 ~~v~Q~~---~lf~-~ti~eni~~~~~~--~~----~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqkQ 334 (426)
+|+||++ .+|+ .|++||+.++... .. .+.++. ...+.++++.+ |+. ...+..+.+|||||||
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGekq 402 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQQ 402 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCchhhCCHHHHH
Confidence 9999997 3554 5999999864210 00 111111 11133444443 452 3456678899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
|++||||++.+|++|||||||++||+.+++.+.+.|+++. ++.|+|++||+++.+. .||++++|++|+++..|+++++
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999999999999999999999999999985 4689999999999885 7999999999999999988765
Q ss_pred c
Q 014366 413 G 413 (426)
Q Consensus 413 ~ 413 (426)
.
T Consensus 483 ~ 483 (501)
T PRK10762 483 T 483 (501)
T ss_pred C
Confidence 3
No 318
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.1e-42 Score=342.26 Aligned_cols=213 Identities=33% Similarity=0.472 Sum_probs=182.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i 265 (426)
.+++++++++|++ ..+++||||+|++||+.||+|+||||||||+++|.|+|+|++|+|++||++++--++.+ .|..|
T Consensus 4 ~l~~~~itK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 5899999999984 46999999999999999999999999999999999999999999999999998666654 56779
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCC---CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMT---KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
|+|+|++.|++. ||.|||.++.... ..+..+..+ .+.+..+++ |++-...+....||-||||||.|-+|
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~-----~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA-----RIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHH-----HHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHH
Confidence 999999999976 9999999886421 112222222 233334443 66666677889999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecc
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~ 408 (426)
|+++|++||||||||-|-|...+++++.+++++ +++|||+|||++.++. .|||+-||++|+++..-+
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999999999999999986 5899999999999986 799999999999876554
No 319
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.8e-43 Score=319.40 Aligned_cols=215 Identities=21% Similarity=0.404 Sum_probs=187.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.+++++|+++|++. .+++|+||++++|++.+++|||||||||.+++|+|+++|++|+|.|+|.+++. ..+.+||
T Consensus 2 ~L~ie~vtK~Fg~k--~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIG 75 (300)
T ss_pred ceEEecchhccCce--eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcc
Confidence 47899999999864 59999999999999999999999999999999999999999999999998764 4567899
Q ss_pred EEecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 267 LVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 267 ~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
|+|.+..|++ .||.|-+.|.....+.+.+++.+- +..|++++ ++-....++..+||-|++|+|.+--|++++
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~--~i~~~~~~kIk~LSKGnqQKIQfisaviHe 148 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERL--EIVGKKTKKIKELSKGNQQKIQFISAVIHE 148 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhc--cccccccchHHHhhhhhhHHHHHHHHHhcC
Confidence 9999999996 599999988655556665554432 34566665 334445567889999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|+++|||||+|||||.+.+.+.+.+.+++ +|.|||+.||+++.++ .||+++.|++|+.|-.|+.+...+
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 99999999999999999999999999986 4899999999999996 799999999999999998877665
No 320
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-42 Score=348.64 Aligned_cols=205 Identities=24% Similarity=0.351 Sum_probs=168.2
Q ss_pred cEEEEeEEEEeCCCC-CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 187 DVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~-~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
.++++|++|+|+++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 589999999997642 3599999999999999999999999999999999999999999999999751
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCCCCCCHHH----HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
++.+.+.+++ .|++||+.+.......+.++ +.++++.+++.+++++ .+.+||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~-----------~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQ-----------PVKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhC-----------CcccCCHHHHHHHHHHH
Confidence 1223334443 59999997643211222222 3345555555555443 55799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||+.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|+++++..+
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 9999999999999999999999999999999875 4689999999999886 6999999999999999998776654
No 321
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-42 Score=361.15 Aligned_cols=214 Identities=24% Similarity=0.365 Sum_probs=173.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~i 265 (426)
.++++|+++. .+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ...++.+
T Consensus 257 ~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 330 (501)
T PRK11288 257 RLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI 330 (501)
T ss_pred EEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCC
Confidence 4889999742 38999999999999999999999999999999999999999999999998865433 3456789
Q ss_pred EEEecCCC---CCc-ccHHHHHcCCCCCC----C--CCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHHH
Q 014366 266 GLVSQDIT---LFS-GTVAENIGYRDLMT----K--IDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQ 334 (426)
Q Consensus 266 ~~v~Q~~~---lf~-~ti~eni~~~~~~~----~--~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqkQ 334 (426)
+|+||++. +|+ .|+.||+.++.... . ...... ...+.+++..+ |++ .....+..+|||||||
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~q 403 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL--NIKTPSREQLIMNLSGGNQQ 403 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc--CcccCCccCccccCCHHHHH
Confidence 99999973 664 69999998643211 0 011110 01123344443 442 3456677899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
|++||||++.+|++|||||||++||+.+++.+.+.|+++. .+.|||++||+++.+. .||++++|++|++++.|++++.
T Consensus 404 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 404 KAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred HHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999998875 4689999999999985 7999999999999999987765
Q ss_pred c
Q 014366 413 G 413 (426)
Q Consensus 413 ~ 413 (426)
.
T Consensus 484 ~ 484 (501)
T PRK11288 484 T 484 (501)
T ss_pred C
Confidence 4
No 322
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=2.6e-42 Score=341.38 Aligned_cols=185 Identities=35% Similarity=0.527 Sum_probs=155.2
Q ss_pred EECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc-cHHHHHcCCCCCCCCCH----
Q 014366 220 LIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM---- 294 (426)
Q Consensus 220 ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~---- 294 (426)
|+||||||||||+++|+|+++|++|+|.++|+++...+. .+++++|+||++.+|+. |++||+.++......+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999876554 36789999999999965 99999987632212222
Q ss_pred HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 014366 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374 (426)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 374 (426)
+++.++++..++.++ ......+||||||||++|||||+.+|+++||||||++||+.+++.+.+.|+++.
T Consensus 79 ~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEF-----------ADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcch-----------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 234445555554444 444567999999999999999999999999999999999999999999999875
Q ss_pred C--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcc
Q 014366 375 G--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 375 ~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~ 417 (426)
+ +.|+|+|||+++.+. .||||++|++|++++.|+++++.+++.
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~ 193 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPA 193 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 3 689999999999875 799999999999999999988876653
No 323
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=3.2e-42 Score=368.51 Aligned_cols=201 Identities=28% Similarity=0.402 Sum_probs=167.2
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC--ccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc-cc
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL--SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GT 278 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~--~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~t 278 (426)
+.+|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||+++.. ..+++++||+|++.+++ .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 45999999999999999999999999999999999999885 8999999998742 34667999999999986 49
Q ss_pred HHHHHcCCCCC---CCCCHHH----HHHHHHHhchHHHHHhcCCCcccccCC-CCCCCChHHHHHHHHHHHhcCCCCEEE
Q 014366 279 VAENIGYRDLM---TKIDMER----VEHTARTANADEFVRTLPQGYNTHIGP-RGSSLSGGQRQRLAIARALYQNSSVLI 350 (426)
Q Consensus 279 i~eni~~~~~~---~~~~~~~----~~~~~~~~~l~~~~~~lp~g~~t~~~~-~g~~LSgGqkQRl~iARal~~~p~ill 350 (426)
|+||+.+.... ...+.++ +++.++..++. +..||.+|+ .+..||||||||++|||||+.+|++|+
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 99999874211 1122222 23333333332 234677764 478999999999999999999999999
Q ss_pred eeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHH-H-HhcCEEEEEeCCEEEEeccccccc
Q 014366 351 LDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLET-V-MMAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 351 lDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~-~-~~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
|||||+|||+.++..+.+.|+++. +++|||++||+++. + ..||++++|++|++++.|+++++.
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHH
Confidence 999999999999999999999886 47899999999973 4 579999999999999999987665
No 324
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=9.8e-42 Score=357.10 Aligned_cols=215 Identities=24% Similarity=0.374 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-Hhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i 265 (426)
.|+++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +++.+
T Consensus 268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 589999983 1699999999999999999999999999999999999999999999999987665543 45679
Q ss_pred EEEecCC---CCCc-ccHHHHHcCCCC--CC-CCCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHHHHHH
Q 014366 266 GLVSQDI---TLFS-GTVAENIGYRDL--MT-KIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 266 ~~v~Q~~---~lf~-~ti~eni~~~~~--~~-~~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqkQRl~ 337 (426)
+|+||++ .+|+ .|+.+|+..... .. .......+ ..+.++++.+ |+. ...+.+..+||||||||++
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRAL--NIKFNHAEQAARTLSGGNQQKVL 413 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHc--CCCCCCccCccccCCcHHHHHHH
Confidence 9999985 3665 499999853210 00 00111111 1133444444 454 4566778899999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||||++.+|++|||||||++||+.+.+.+.+.|+++. ++.|+|+|||+++.+. .|||+++|++|+++..|+++++..+
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~~ 493 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVD 493 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCHH
Confidence 9999999999999999999999999999999999875 4689999999999986 7999999999999999988776543
No 325
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-41 Score=356.20 Aligned_cols=202 Identities=23% Similarity=0.313 Sum_probs=170.0
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +.+
T Consensus 318 ~~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 318 NALEVENLTKGFDNG--PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred ceEEEEeeEEeeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 369999999999753 5999999999999999999999999999999999999999999999872 469
Q ss_pred EEEecCCC--CCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchH-HHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 266 GLVSQDIT--LFS-GTVAENIGYRDLMTKIDMERVEHTARTANAD-EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 266 ~~v~Q~~~--lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
+|++|++. +++ .|++||+.+... .....+++.+.++..++. +.. ..++.+||||||||++||||
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGq~qrv~la~a 452 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQ-EGDDEQAVRGTLGRLLFSQDDI-----------KKSVKVLSGGEKGRMLFGKL 452 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhcc-CCccHHHHHHHHHHcCCChhHh-----------cCcccccCHHHHHHHHHHHH
Confidence 99999974 443 599999864321 112344566666666652 333 34568999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEE-Eecccccccc
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLE-ELNRSTLLGS 414 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~-e~g~~~~l~~ 414 (426)
++.+|++|||||||++||+.+.+.+.+.|+++ +.|||+|||+++.+. .|||+++|++|+++ ..|+++++.+
T Consensus 453 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 453 MMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 99999999999999999999999999999887 359999999999886 69999999999998 7787766543
No 326
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.1e-41 Score=322.27 Aligned_cols=194 Identities=24% Similarity=0.383 Sum_probs=155.3
Q ss_pred EEeCCCCCCcceeeeEEEe-----CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEe
Q 014366 195 FKYADNMPLVLDQLNLHIR-----AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269 (426)
Q Consensus 195 ~~y~~~~~~~l~~isl~i~-----~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~ 269 (426)
|+|++.. ..+++++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .++|++
T Consensus 1 ~~y~~~~-~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~ 67 (246)
T cd03237 1 YTYPTMK-KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKP 67 (246)
T ss_pred CCCcccc-cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEec
Confidence 5676543 47888888887 69999999999999999999999999999999999884 589999
Q ss_pred cCCCC-CcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCE
Q 014366 270 QDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSV 348 (426)
Q Consensus 270 Q~~~l-f~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~i 348 (426)
|++.. +..|++||+.+.............++++..++.+. .+....+||||||||++|||||+.+|++
T Consensus 68 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~qrv~iaraL~~~p~l 136 (246)
T cd03237 68 QYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQI-----------LDREVPELSGGELQRVAIAACLSKDADI 136 (246)
T ss_pred ccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHH-----------hhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99875 57899999965322111112233445555555443 3445679999999999999999999999
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEE--Eecccccc
Q 014366 349 LILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLE--ELNRSTLL 412 (426)
Q Consensus 349 lllDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~--e~g~~~~l 412 (426)
+||||||++||+.++..+.+.|+++.+ ++|+|+|||+++.+. .||++++|+++..+ ..++|+.+
T Consensus 137 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 137 YLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 999999999999999999999998753 689999999999987 69999999765433 34445443
No 327
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-41 Score=355.76 Aligned_cols=209 Identities=23% Similarity=0.343 Sum_probs=165.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++|
T Consensus 2 l~i~~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 68 (530)
T PRK15064 2 LSTANITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGK 68 (530)
T ss_pred EEEEEEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence 789999999975 35999999999999999999999999999999999999999999999872 35999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCC--------------CC--CCH-HHHHHH----------HHHhchHHHHHhcCCCccc
Q 014366 268 VSQDITLFSG-TVAENIGYRDLM--------------TK--IDM-ERVEHT----------ARTANADEFVRTLPQGYNT 319 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~--------------~~--~~~-~~~~~~----------~~~~~l~~~~~~lp~g~~t 319 (426)
++|++.+|+. |++||+.++... .. ... ..+.+. -....+.+.++.+ |++.
T Consensus 69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~ 146 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPE 146 (530)
T ss_pred EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCCh
Confidence 9999988764 999999764210 00 000 000000 0011223334443 4433
Q ss_pred cc-CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEE
Q 014366 320 HI-GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFL 397 (426)
Q Consensus 320 ~~-~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~v 397 (426)
.. .....+||||||||++|||||+.+|++|||||||++||+.++..+.+.|.+ .+.|||+|||+++.+. .||+|++
T Consensus 147 ~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~ 224 (530)
T PRK15064 147 EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMAD 224 (530)
T ss_pred hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEE
Confidence 22 345689999999999999999999999999999999999999999999975 3689999999999885 7999999
Q ss_pred EeCCEEE-Eeccccccc
Q 014366 398 LDNGKLE-ELNRSTLLG 413 (426)
Q Consensus 398 l~~G~i~-e~g~~~~l~ 413 (426)
|++|+++ +.|+++++.
T Consensus 225 l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 225 LDYGELRVYPGNYDEYM 241 (530)
T ss_pred EeCCEEEEecCCHHHHH
Confidence 9999994 788776553
No 328
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-41 Score=351.75 Aligned_cols=214 Identities=16% Similarity=0.338 Sum_probs=170.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~-~~r~~i 265 (426)
.|+++|++++| +++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.+
T Consensus 250 ~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 250 ILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred EEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 59999999974 2499999999999999999999999999999999999999999999999998766543 346779
Q ss_pred EEEecCCC---CCc-ccHHHHHcCC-----CCCCC-CCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHHH
Q 014366 266 GLVSQDIT---LFS-GTVAENIGYR-----DLMTK-IDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQ 334 (426)
Q Consensus 266 ~~v~Q~~~---lf~-~ti~eni~~~-----~~~~~-~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqkQ 334 (426)
+|+||++. +|+ .|+.+|..+. ..... .+..+.. ....++++.+ |+. ...+....+|||||||
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSM--RVKTPGHRTQIGSLSGGNQQ 398 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhc--CccCCCcccccccCCcHHHH
Confidence 99999963 565 4777763221 11001 0111111 1122334443 332 2346678899999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
|++||||++.+|++|||||||++||+.+++.+.+.|+++. .+.|||++||+++.+. .|||+++|++|+++..++.+.
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 9999999999999999999999999999999999998875 4789999999999885 799999999999998876653
No 329
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=7.5e-41 Score=353.61 Aligned_cols=210 Identities=23% Similarity=0.272 Sum_probs=169.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..++
T Consensus 4 ~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~ 71 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVG 71 (552)
T ss_pred EEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 58999999999732 3699999999999999999999999999999999999999999999875 24699
Q ss_pred EEecCCCCCc-ccHHHHHcCCCCC---------------C-CCC--------HHHHHHHHHHhch-------HHHHHhcC
Q 014366 267 LVSQDITLFS-GTVAENIGYRDLM---------------T-KID--------MERVEHTARTANA-------DEFVRTLP 314 (426)
Q Consensus 267 ~v~Q~~~lf~-~ti~eni~~~~~~---------------~-~~~--------~~~~~~~~~~~~l-------~~~~~~lp 314 (426)
||||++.+++ .|++||+.++... . ... ..++.++++.++. .+.++.+
T Consensus 72 ~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 150 (552)
T TIGR03719 72 YLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL- 150 (552)
T ss_pred EEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC-
Confidence 9999999885 4999999864210 0 000 0123333333332 2233333
Q ss_pred CCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcC
Q 014366 315 QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAK 393 (426)
Q Consensus 315 ~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D 393 (426)
|++. .+....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .|+|+|||+++.+. .||
T Consensus 151 -~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIiisHd~~~~~~~~d 226 (552)
T TIGR03719 151 -RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVAVTHDRYFLDNVAG 226 (552)
T ss_pred -CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcC
Confidence 4432 456788999999999999999999999999999999999999999999998863 59999999999986 699
Q ss_pred EEEEEeCCEEE-Eeccccccc
Q 014366 394 RVFLLDNGKLE-ELNRSTLLG 413 (426)
Q Consensus 394 ~i~vl~~G~i~-e~g~~~~l~ 413 (426)
++++|++|+++ ..|+++++.
T Consensus 227 ~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 227 WILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred eEEEEECCEEEEecCCHHHHH
Confidence 99999999976 667766543
No 330
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.3e-41 Score=356.46 Aligned_cols=209 Identities=22% Similarity=0.284 Sum_probs=167.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +..++
T Consensus 6 ~l~i~~l~~~y~~~-~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~ 73 (556)
T PRK11819 6 IYTMNRVSKVVPPK-KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVG 73 (556)
T ss_pred EEEEeeEEEEeCCC-CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 58999999999722 4699999999999999999999999999999999999999999999874 24699
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCC---------------CCCCH---------HHHHHHHHH-------hchHHHHHhcC
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLM---------------TKIDM---------ERVEHTART-------ANADEFVRTLP 314 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~---------------~~~~~---------~~~~~~~~~-------~~l~~~~~~lp 314 (426)
||||++.+++. |++||+.++... ..... .++.+.++. ..+.+.++.+
T Consensus 74 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 152 (556)
T PRK11819 74 YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL- 152 (556)
T ss_pred EEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC-
Confidence 99999998865 999999764210 00000 001111111 1123334443
Q ss_pred CCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcC
Q 014366 315 QGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAK 393 (426)
Q Consensus 315 ~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D 393 (426)
|++ ....+..+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|||+++.+. .||
T Consensus 153 -gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d 228 (556)
T PRK11819 153 -RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAG 228 (556)
T ss_pred -CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcC
Confidence 443 2466778999999999999999999999999999999999999999999999873 59999999999986 699
Q ss_pred EEEEEeCCEEE-Eecccccc
Q 014366 394 RVFLLDNGKLE-ELNRSTLL 412 (426)
Q Consensus 394 ~i~vl~~G~i~-e~g~~~~l 412 (426)
+|++|++|+++ ..|+.+.+
T Consensus 229 ~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 229 WILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred eEEEEeCCEEEEecCCHHHH
Confidence 99999999986 67776654
No 331
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=4.1e-41 Score=359.26 Aligned_cols=205 Identities=27% Similarity=0.378 Sum_probs=170.7
Q ss_pred CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc
Q 014366 201 MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG 277 (426)
Q Consensus 201 ~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 277 (426)
.+++|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.+||.++. ...+++.++||+|++.+++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 357999999999999999999999999999999999999885 799999999875 35678899999999999864
Q ss_pred -cHHHHHcCCCCCC---CCCHHHHHHHHHHhchHHHHHh--cCCCcccccCCC--CCCCChHHHHHHHHHHHhcCCCCEE
Q 014366 278 -TVAENIGYRDLMT---KIDMERVEHTARTANADEFVRT--LPQGYNTHIGPR--GSSLSGGQRQRLAIARALYQNSSVL 349 (426)
Q Consensus 278 -ti~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~--lp~g~~t~~~~~--g~~LSgGqkQRl~iARal~~~p~il 349 (426)
||+||+.++.... ..+.++. ...+++.++. +++..||.+|+. +..||||||||++|||||+.+|+++
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEK-----RERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL 188 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence 9999998753221 1122211 1112333333 233568999974 4789999999999999999999999
Q ss_pred EeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChH-H-HHhcCEEEEEeCCEEEEeccccccc
Q 014366 350 ILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLE-T-VMMAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 350 llDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~-~-~~~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+|||||||||+.+...+.+.|+++. +++|+|+++|+++ . ...||++++|++|++++.|+++++.
T Consensus 189 llDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred EeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 9999999999999999999999986 4789999999985 4 4689999999999999999987664
No 332
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.7e-41 Score=322.94 Aligned_cols=202 Identities=26% Similarity=0.336 Sum_probs=159.6
Q ss_pred EeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEE-----------EcCEeCCCCCHH
Q 014366 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL-----------VDDHDVQNIRLD 259 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~-----------~~g~~i~~~~~~ 259 (426)
.+|+|+|++. ..+++|+|+ +++||+++|+||||||||||+++|+|+++|++|+|. ++|+++.+....
T Consensus 4 ~~~~~~y~~~-~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPN-SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCc-chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 4789999754 359999994 999999999999999999999999999999999996 788887654332
Q ss_pred HHhc--ceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 260 SLRR--HVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 260 ~~r~--~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
..+. .++|++|++.+++.++.+|+...... ....+...++++..++ +...+..+.+||||||||++
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKK-KDERGKLDELVDQLEL-----------RHVLDRNIDQLSGGELQRVA 149 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhch-hHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHHHHH
Confidence 2222 47899998877766666665432111 1112334445554444 44445567899999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
||||++.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||+|++|+ |++.+.|
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999999999998854 689999999999987 699999994 6665543
No 333
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4.3e-41 Score=350.97 Aligned_cols=210 Identities=25% Similarity=0.338 Sum_probs=166.9
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-CccEEEEcCEeCCC-CCHHHHhc
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVDDHDVQN-IRLDSLRR 263 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~I~~~g~~i~~-~~~~~~r~ 263 (426)
..|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. .....+|+
T Consensus 259 ~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 259 PRIVLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred ceEEEeceEEEECCe--eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 359999999999753 599999999999999999999999999999999999876 79999999987632 22334677
Q ss_pred ceEEEecCCCCC-c--ccHHHHHcCCCC-----CCCCC---HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 264 HVGLVSQDITLF-S--GTVAENIGYRDL-----MTKID---MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 264 ~i~~v~Q~~~lf-~--~ti~eni~~~~~-----~~~~~---~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
+++|++|++.++ . .++++++.++.. ..... .+++.++++..++.+ .....++.+|||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGq 406 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDK----------RTADAPFHSLSWGQ 406 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCch----------hhccCchhhCCHHH
Confidence 899999998764 2 367777643211 00111 123344444444432 03445668999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-C-ceEEEeccChHHHH--hcCEEEEEeCCEEEEec
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-H-HTVLVIAHHLETVM--MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~~~~~~--~~D~i~vl~~G~i~e~g 407 (426)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ + .|||++||+++.+. .||++++|++|++++.-
T Consensus 407 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 407 QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999999999999999999853 3 46999999999985 48999999999998654
No 334
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.4e-40 Score=291.35 Aligned_cols=143 Identities=34% Similarity=0.569 Sum_probs=134.1
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
++++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 67 (144)
T cd03221 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGY 67 (144)
T ss_pred CEEEEEEEEECCc--eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEE
Confidence 4689999999753 5999999999999999999999999999999999999999999999984 36999
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
+|| ||+||+||++||||++++|+
T Consensus 68 ~~~---------------------------------------------------------lS~G~~~rv~laral~~~p~ 90 (144)
T cd03221 68 FEQ---------------------------------------------------------LSGGEKMRLALAKLLLENPN 90 (144)
T ss_pred Ecc---------------------------------------------------------CCHHHHHHHHHHHHHhcCCC
Confidence 998 99999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCE
Q 014366 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 348 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~ 402 (426)
++||||||++||+.+...+.+.++++ ++|+|++||+++.+. .||++++|++|+
T Consensus 91 illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 91 LLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999887 469999999999985 699999999985
No 335
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=8.9e-41 Score=311.52 Aligned_cols=185 Identities=21% Similarity=0.263 Sum_probs=148.5
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEE-EcCEeCCCCCHHHHhcceEEEecCCCCCcc-cHHH
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL-VDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAE 281 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~-~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~e 281 (426)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.+++.+|+. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 777532 12356677765 9999
Q ss_pred HHcCCCCCCCCCHHHHHHH-HHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCH
Q 014366 282 NIGYRDLMTKIDMERVEHT-ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (426)
Q Consensus 282 ni~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~ 360 (426)
|+.+.....+.+.++..+. .+..++.+. .+.....||||||||++||||++.+|+++||||||+++|+
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQLTQLEQC-----------YTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhChhHH-----------hhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 9976432112233332222 222233322 2334578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 361 RSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 361 ~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
.+++.+.+.+.+..+++|+|++||+++.+. .||++++|++|++++.|+.+..
T Consensus 138 ~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 190 (213)
T PRK15177 138 ATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQA 190 (213)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHH
Confidence 999999998865444578999999999985 7999999999999999876654
No 336
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.7e-40 Score=379.93 Aligned_cols=214 Identities=24% Similarity=0.377 Sum_probs=179.9
Q ss_pred cEEEEeEEEEeCC--CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEEcCEeCCCCCHHHH
Q 014366 187 DVKFCNISFKYAD--NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD---PLSGCILVDDHDVQNIRLDSL 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~--~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~I~~~g~~i~~~~~~~~ 261 (426)
.++++||+++|+. +.+.+|+|+|+++++||++||+||||||||||+++|+|+.+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 3789999999952 23469999999999999999999999999999999999997 78999999999874 246
Q ss_pred hcceEEEecCCCCC-cccHHHHHcCCCCCC---CCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 262 RRHVGLVSQDITLF-SGTVAENIGYRDLMT---KIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 262 r~~i~~v~Q~~~lf-~~ti~eni~~~~~~~---~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
|+.++||+|++.++ ..||+||+.++...+ ..++ ++++++++..++.+ -.|+.+|+.+.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHh
Confidence 88899999997765 569999998742111 1222 23455566655543 357788888889999999
Q ss_pred HHHHHHHHhcCCCC-EEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHH--HhcCEEEEEeCC-EEEEecc
Q 014366 334 QRLAIARALYQNSS-VLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETV--MMAKRVFLLDNG-KLEELNR 408 (426)
Q Consensus 334 QRl~iARal~~~p~-illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~--~~~D~i~vl~~G-~i~e~g~ 408 (426)
||++|||||+.+|+ +|+|||||||||+.+...+.+.|+++. +++|||+++|+++.. ..||++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999984 578999999999863 579999999997 9999998
Q ss_pred ccc
Q 014366 409 STL 411 (426)
Q Consensus 409 ~~~ 411 (426)
+.+
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 753
No 337
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.1e-40 Score=345.90 Aligned_cols=206 Identities=27% Similarity=0.334 Sum_probs=166.6
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + ..+
T Consensus 323 ~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 323 KVIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred eEEEEEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 359999999999753 599999999999999999999999999999999999999999999854 2 159
Q ss_pred EEEecCC-CCCc-ccHHHHHcCCCCCCCC--CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 266 GLVSQDI-TLFS-GTVAENIGYRDLMTKI--DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 266 ~~v~Q~~-~lf~-~ti~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
||+||++ .+++ .|++||+.++...... ...+...+++..++.+ ........+||||||||++||||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKG----------GDQQKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCCh----------hHhcCchhhCCHHHHHHHHHHHH
Confidence 9999997 5665 5999999875321111 1222333444444321 12344568999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeC-CEEEE-eccccccccCc
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDN-GKLEE-LNRSTLLGSNH 416 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~-G~i~e-~g~~~~l~~~~ 416 (426)
++.+|++|||||||++||+.+.+.+.+.|.++. .|+|+|||+++.+. .||+|++|++ |++.+ .|+.+++.++.
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~ 535 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDK 535 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHH
Confidence 999999999999999999999999999999873 48999999999886 7999999996 78864 67766665543
No 338
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.1e-39 Score=344.67 Aligned_cols=202 Identities=25% Similarity=0.344 Sum_probs=163.6
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + ..|
T Consensus 321 ~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i 387 (552)
T TIGR03719 321 KVIEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKL 387 (552)
T ss_pred eEEEEeeEEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEE
Confidence 359999999999753 599999999999999999999999999999999999999999999854 2 159
Q ss_pred EEEecCCC-CCc-ccHHHHHcCCCCCCCCC--HHHHHHHHHHhchHHHHHhcCCCccc-ccCCCCCCCChHHHHHHHHHH
Q 014366 266 GLVSQDIT-LFS-GTVAENIGYRDLMTKID--MERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 266 ~~v~Q~~~-lf~-~ti~eni~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~~~g~~LSgGqkQRl~iAR 340 (426)
+|+||++. +++ .|++||+.++....... ..+...+++..+ ++. .......+||||||||++|||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFN-----------FKGSDQQKKVGQLSGGERNRVHLAK 456 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCC-----------CChhHhcCchhhCCHHHHHHHHHHH
Confidence 99999974 664 59999998753211111 122233333333 322 234566899999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeC-CEEEE-eccccccc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDN-GKLEE-LNRSTLLG 413 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~-G~i~e-~g~~~~l~ 413 (426)
|++.+|++|||||||++||+.+.+.+.+.|+++. .|||+|||+++.+. .||+|++|++ |+++. .|+.+++.
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence 9999999999999999999999999999999874 48999999999886 6999999997 58764 45555443
No 339
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.6e-40 Score=294.90 Aligned_cols=216 Identities=28% Similarity=0.384 Sum_probs=179.7
Q ss_pred EEEeEEEEeCCC---CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 189 KFCNISFKYADN---MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 189 ~~~~v~~~y~~~---~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
.++|..+.|.++ ++++|+++|++|++|+++.|+|.||||||||++.|+|-.+|++|+|.+||+|+...+.......+
T Consensus 3 ~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~l 82 (263)
T COG1101 3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLL 82 (263)
T ss_pred ccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHH
Confidence 445555555322 35799999999999999999999999999999999999999999999999999999988877889
Q ss_pred EEEecCCC--CC-cccHHHHHcCCCCC---CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDIT--LF-SGTVAENIGYRDLM---TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~~--lf-~~ti~eni~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
+-|+|||. .+ +.||.||+.++... ....... ..-++....+.+..+|.|++-.++.+..-|||||||-++++
T Consensus 83 arVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~l--n~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~ 160 (263)
T COG1101 83 ARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSAL--NERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL 160 (263)
T ss_pred HHHhcchhhCCcccccHHHHHHHHHhcCcccccchhh--hHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHH
Confidence 99999996 35 45999999864321 1122111 11122234456788999999999999999999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHH-HhcCEEEEEeCCEEEEe
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETV-MMAKRVFLLDNGKLEEL 406 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~ 406 (426)
.|.++.|+||+|||-|++|||.+...|++.=.+.- + +-|.+||||+++.+ .+-+|.++|++|+|+-.
T Consensus 161 MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 161 MATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred HHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 99999999999999999999999999998877763 2 46999999999775 68899999999999854
No 340
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=7.2e-40 Score=316.77 Aligned_cols=223 Identities=29% Similarity=0.389 Sum_probs=183.4
Q ss_pred cEEEEeEEEEeC--CCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CccEEEEcCEeCCCCCHH
Q 014366 187 DVKFCNISFKYA--DNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-----LSGCILVDDHDVQNIRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~--~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-----~~G~I~~~g~~i~~~~~~ 259 (426)
-++++|++..|. ++...++++|||+|++||++||||+||||||-....++|+++- .+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 488999998885 3345699999999999999999999999999999999999964 479999999999888887
Q ss_pred HHhc----ceEEEecCCC--CCcc-cHHHHH----cCCCCC-CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCC
Q 014366 260 SLRR----HVGLVSQDIT--LFSG-TVAENI----GYRDLM-TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSS 327 (426)
Q Consensus 260 ~~r~----~i~~v~Q~~~--lf~~-ti~eni----~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~ 327 (426)
++|+ +|+++||+|. |-+. ||..-+ .+-... .....+++.+.++.+++.+--. .+...+.+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~--------rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK--------RLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh--------hhhhCCcc
Confidence 7764 6999999996 3333 554444 332211 1122455666777777654322 23345689
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEE
Q 014366 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLE 404 (426)
Q Consensus 328 LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~ 404 (426)
|||||||||.||.||+.+|++||.||||.+||...+.+|++.|+++.+ +..+++||||+..++ .||||+||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 999999999999999999999999999999999999999999999864 689999999999997 79999999999999
Q ss_pred EeccccccccCcc
Q 014366 405 ELNRSTLLGSNHD 417 (426)
Q Consensus 405 e~g~~~~l~~~~~ 417 (426)
|.|+.+.++.++.
T Consensus 238 E~~~t~~lF~~Pq 250 (534)
T COG4172 238 ETGTTETLFAAPQ 250 (534)
T ss_pred ecCcHHHHhhCCC
Confidence 9999988887654
No 341
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-40 Score=300.48 Aligned_cols=210 Identities=26% Similarity=0.371 Sum_probs=174.7
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhcc
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRH 264 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~ 264 (426)
.-|+++||+++|+++ ++|+|+|++|++||..+|+||||||||||+++++|.++|++|.+.+.|+.....+. .++|++
T Consensus 30 ~li~l~~v~v~r~gk--~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 30 PLIELKNVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred ceEEecceEEEECCE--eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 359999999999764 69999999999999999999999999999999999999999999999999887776 899999
Q ss_pred eEEEecCCCC-C--cccHHHHHcCC------CCCCCCCHHHH---HHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 265 VGLVSQDITL-F--SGTVAENIGYR------DLMTKIDMERV---EHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 265 i~~v~Q~~~l-f--~~ti~eni~~~------~~~~~~~~~~~---~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
||+|+-+-.. | +.+++|-+.-| ......++++. ...++.+ |.....++.-.+||-||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~-----------g~~~la~r~~~~LS~Ge 176 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELL-----------GAKHLADRPFGSLSQGE 176 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHc-----------chhhhccCchhhcCHhH
Confidence 9999976442 3 34788877532 11113333332 2333333 44444556678999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC---CceEEEeccChHHHH-hcCEEEEEeCCEEEEecc
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG---HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~ 408 (426)
|||+.|||||+++|++|||||||+|||...++.+.+.|.++.. ..++|+|||+.+++. ..++++.+++|+++.+|.
T Consensus 177 ~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 177 QRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999999998853 468999999999986 679999999999998873
No 342
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.2e-39 Score=342.64 Aligned_cols=193 Identities=25% Similarity=0.369 Sum_probs=163.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++++|++++|++. .|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++ ..++
T Consensus 340 ~l~~~~ls~~~~~~---~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGDF---SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECCE---EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 59999999999642 5999999999999999999999999999999999999999999985 1499
Q ss_pred EEecCCCCC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 267 LVSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 267 ~v~Q~~~lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
|+||++.++ +.|++||+.++..... ......++++..++.+..++ ...+||||||||++|||||+++
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~L~~l~l~~~~~~-----------~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLG-SSYYKSEIIKPLQLERLLDK-----------NVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcC-hHHHHHHHHHHCCCHHHHhC-----------CcccCCHHHHHHHHHHHHHhcC
Confidence 999998765 5699999987522111 12344566666666655444 4579999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecc
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~ 408 (426)
|++|||||||++||+.++..+.+.|+++.+ ++|+|+|||+++.+. .|||+++|+ |++...|+
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 999999999999999999999999999843 689999999999886 799999996 47777665
No 343
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.1e-40 Score=289.84 Aligned_cols=219 Identities=25% Similarity=0.359 Sum_probs=190.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcC-EeCCCCCHHHH-hcc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD-HDVQNIRLDSL-RRH 264 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g-~~i~~~~~~~~-r~~ 264 (426)
.++++||+.+|++- .+|+++||++.+||.-+|+|||||||||++..|+|-.+|+.|+++++| .|++.++..++ |..
T Consensus 5 iL~~~~vsVsF~GF--~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 5 ILYLDGVSVSFGGF--KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred eEEEeceEEEEcce--eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 58999999999864 599999999999999999999999999999999999999999999999 99999887665 556
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCCC------------CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLMT------------KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
||--||.|..|.. ||+||+.+..... .....++++.+...++.+.. +.....||.|
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~-----------~~~A~~LSHG 151 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDER-----------DRLAALLSHG 151 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhh-----------hhhhhhhccc
Confidence 9999999999965 9999997643211 11223455555555554443 3455799999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~ 410 (426)
|||++.|+..++++|++|+||||++|+-.+.....-+.|+++++.++|++|-||+.+++ .||+|-||++|.+...|+.+
T Consensus 152 qKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld 231 (249)
T COG4674 152 QKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLD 231 (249)
T ss_pred hhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHH
Confidence 99999999999999999999999999999999999999999998899999999999997 79999999999999999999
Q ss_pred ccccCcch
Q 014366 411 LLGSNHDS 418 (426)
Q Consensus 411 ~l~~~~~~ 418 (426)
++.++++-
T Consensus 232 ~v~~dp~V 239 (249)
T COG4674 232 EVQNDPKV 239 (249)
T ss_pred HhhcCcce
Confidence 99888753
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=5.5e-39 Score=344.15 Aligned_cols=201 Identities=26% Similarity=0.378 Sum_probs=162.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+++|++ +++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+ |.++ .++
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 5999999999975 35999999999999999999999999999999999999999999998 4322 599
Q ss_pred EEecCC-CCCcc-cHHHHHcCCCCCCCCC--HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 267 LVSQDI-TLFSG-TVAENIGYRDLMTKID--MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 267 ~v~Q~~-~lf~~-ti~eni~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
|++|++ .+++. |+.||+.++......+ ..++...++..++.. .....+...||||||||++||||+
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGekqRl~la~al 455 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP----------KRAMTPVKALSGGERNRLLLARLF 455 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH----------HHHhChhhhCCHHHHHHHHHHHHH
Confidence 999986 46654 9999998643211111 223344444444321 123345679999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEe-CCEEEEe-cccccc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLD-NGKLEEL-NRSTLL 412 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~-~G~i~e~-g~~~~l 412 (426)
+.+|++|||||||++||+.+...+.+.|+++ +.|||+|||+.+.+. .||++++|+ +|++++. |+.++.
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 9999999999999999999999999999886 459999999999886 799999998 8999763 444443
No 345
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-39 Score=284.46 Aligned_cols=154 Identities=45% Similarity=0.733 Sum_probs=143.6
Q ss_pred EEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEe
Q 014366 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269 (426)
Q Consensus 190 ~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~ 269 (426)
++|++|+|++. ++++++||+|++|++++|+|+||||||||+++|+|+++|++|+|+++|.++.......+++.++|++
T Consensus 2 ~~~~~~~~~~~--~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCCe--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 68999999754 5999999999999999999999999999999999999999999999999988766677788899999
Q ss_pred cCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEE
Q 014366 270 QDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVL 349 (426)
Q Consensus 270 Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~il 349 (426)
| |||||+||++||||++.+|+++
T Consensus 80 q---------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 80 Q---------------------------------------------------------LSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred e---------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 9 9999999999999999999999
Q ss_pred EeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHh-cCEEEEEeCCE
Q 014366 350 ILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMM-AKRVFLLDNGK 402 (426)
Q Consensus 350 llDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~D~i~vl~~G~ 402 (426)
+|||||++||+.++..+.+.+.++.+ ++|++++||+++.+.. ||++++|++|+
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999999999998754 5899999999999975 79999999875
No 346
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-39 Score=343.32 Aligned_cols=200 Identities=24% Similarity=0.350 Sum_probs=164.3
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++||+++|++ +.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 311 ~~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 311 PLLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred ceEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 35999999999975 35999999999999999999999999999999999999999999999741 259
Q ss_pred EEEecCC--CCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 266 GLVSQDI--TLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 266 ~~v~Q~~--~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
||++|++ .+.. .|+.+++....+ ....+++...++..++.. .....+...||||||||++|||++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGekqRl~La~~l 445 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAP--QELEQKLRDYLGGFGFQG----------DKVTEETRRFSGGEKARLVLALIV 445 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCc--hhhHHHHHHHHHHcCCCh----------hHhcCchhhCCHHHHHHHHHHHHH
Confidence 9999985 3443 488888742111 112344555555555421 123345679999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEE-Eecccccc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLE-ELNRSTLL 412 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~-e~g~~~~l 412 (426)
+.+|++|||||||++||+.+...+.+.|.++ + .|||+|||+++.+. .||+|++|++|+++ ..|+.+++
T Consensus 446 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 446 WQRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 9999999999999999999999999999987 3 49999999999986 79999999999997 67776655
No 347
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=7.4e-39 Score=289.01 Aligned_cols=151 Identities=28% Similarity=0.366 Sum_probs=134.5
Q ss_pred EeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEec
Q 014366 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQ 270 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q 270 (426)
.|++++|++. .++++ +|++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++|
T Consensus 4 ~~l~~~~~~~--~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q 68 (177)
T cd03222 4 PDCVKRYGVF--FLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQ 68 (177)
T ss_pred CCeEEEECCE--EEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEcc
Confidence 5899999753 58888 49999999999999999999999999999999999999999853 788888
Q ss_pred CCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEE
Q 014366 271 DITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLI 350 (426)
Q Consensus 271 ~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ill 350 (426)
++. ||||||||++||||++.+|++++
T Consensus 69 ~~~------------------------------------------------------LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 69 YID------------------------------------------------------LSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred cCC------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 642 99999999999999999999999
Q ss_pred eeccCCCCCHHHHHHHHHHHHHHc-CC-ceEEEeccChHHHH-hcCEEEEEeCCEEEEe--cccc
Q 014366 351 LDEATSALDSRSELLVRQAVDRLL-GH-HTVLVIAHHLETVM-MAKRVFLLDNGKLEEL--NRST 410 (426)
Q Consensus 351 lDEpts~LD~~~~~~i~~~l~~~~-~~-~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~--g~~~ 410 (426)
|||||++||+.+++.+.+.++++. ++ .|+|++||+++.+. .||++++|+++-.+.. |.|.
T Consensus 95 LDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence 999999999999999999998874 33 79999999999987 6999999998765533 5555
No 348
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.2e-38 Score=343.04 Aligned_cols=201 Identities=22% Similarity=0.334 Sum_probs=162.1
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.++
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 359999999999643 3599999999999999999999999999999999999999999999865 2469
Q ss_pred EEEecCCCCCcccHHHHHc--CCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc
Q 014366 266 GLVSQDITLFSGTVAENIG--YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 266 ~~v~Q~~~lf~~ti~eni~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
+|++|++. ...++.+|.. +.........+++..+++.+++.+.. ...++.+||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHHHHh
Confidence 99999863 2234444432 11111123456666777777664321 22345799999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEE-Eeccccc
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLE-ELNRSTL 411 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~-e~g~~~~ 411 (426)
.+|++|||||||++||+.+.+.+.+.|.+. + .|+|+|||+++.+. .||++++|++|+++ ..|++++
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~ 711 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHD 711 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 999999999999999999999999998875 3 49999999999986 69999999999998 5666544
No 349
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-38 Score=285.59 Aligned_cols=214 Identities=25% Similarity=0.369 Sum_probs=183.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCccEEEEcCEeCCCCCHHHH-hc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDSL-RR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~--~~p~~G~I~~~g~~i~~~~~~~~-r~ 263 (426)
.++++|++.+-.+. +.+|+++||+|++||+.+|.||||||||||.+.|+|. |++++|+|.++|+|+.++++.+. |.
T Consensus 3 ~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 3 MLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 48999999998764 3699999999999999999999999999999999997 58999999999999999998765 56
Q ss_pred ceEEEecCCCCCcc-cHHHHHcCCCCC-CC------CCHHHHHHHHHHhchHH-HHHhcCCCcccccCCCCCCCChHHHH
Q 014366 264 HVGLVSQDITLFSG-TVAENIGYRDLM-TK------IDMERVEHTARTANADE-FVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eni~~~~~~-~~------~~~~~~~~~~~~~~l~~-~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
.+..-+|.|.=++| |+.+-++.+... .+ ...+++.++++..++++ ++++ . ++ ..+|||||+
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R---~----vN---~GFSGGEkK 151 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLER---Y----VN---EGFSGGEKK 151 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhc---c----cC---CCcCcchHH
Confidence 69999999998888 999988643211 01 11355667777777766 4433 1 22 479999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHh--cCEEEEEeCCEEEEeccccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMM--AKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~--~D~i~vl~~G~i~e~g~~~~ 411 (426)
|.-|+.+++.+|++.|||||-||||..+-+.|.+.+.+++. +.++++|||....+.+ .|++.||-+|+|+..|.++.
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~el 231 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPEL 231 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999864 7899999999999986 49999999999999999843
No 350
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.2e-38 Score=358.70 Aligned_cols=214 Identities=24% Similarity=0.345 Sum_probs=176.2
Q ss_pred cEEEEeEEEEeCC-----------CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeC
Q 014366 187 DVKFCNISFKYAD-----------NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDV 253 (426)
Q Consensus 187 ~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p--~~G~I~~~g~~i 253 (426)
.+.++||++..+. +...+|+|+|+++++|+++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5899999998742 123699999999999999999999999999999999999763 789999999875
Q ss_pred CCCCHHHHhcceEEEecCCCCCc-ccHHHHHcCCCCC---CCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCC
Q 014366 254 QNIRLDSLRRHVGLVSQDITLFS-GTVAENIGYRDLM---TKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRG 325 (426)
Q Consensus 254 ~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~---~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g 325 (426)
. ...+++.+|||+|++.+++ .||+||+.+.... ...+. +.+++.++..++.+.. ++.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~-------~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLK-------DAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHh-------CCccCCCC
Confidence 4 2456778999999988876 5999999864211 11222 2355666776665543 45555443
Q ss_pred -CCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHH-H-HhcCEEEEEeC-
Q 014366 326 -SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLET-V-MMAKRVFLLDN- 400 (426)
Q Consensus 326 -~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~-~-~~~D~i~vl~~- 400 (426)
..||||||||++|||+|+.+|++|+|||||||||+.+...+.+.|+++. +++|||+++|+++. + ..||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6899999999999999999999999999999999999999999999985 47899999999974 3 68999999996
Q ss_pred CEEEEecccc
Q 014366 401 GKLEELNRST 410 (426)
Q Consensus 401 G~i~e~g~~~ 410 (426)
|+++..|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
No 351
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-38 Score=336.21 Aligned_cols=207 Identities=23% Similarity=0.354 Sum_probs=158.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++||+++|++. .+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.. .++|
T Consensus 2 i~i~nls~~~g~~--~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~ 68 (638)
T PRK10636 2 IVFSSLQIRRGVR--VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAW 68 (638)
T ss_pred EEEEEEEEEeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEE
Confidence 7899999999753 59999999999999999999999999999999999999999999998741 3788
Q ss_pred EecCCCCCcccHHHHHcCCCCC-CCC-----------CHHHH---HHHHH-------HhchHHHHHhcCCCcc-cccCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLM-TKI-----------DMERV---EHTAR-------TANADEFVRTLPQGYN-THIGPR 324 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~-~~~-----------~~~~~---~~~~~-------~~~l~~~~~~lp~g~~-t~~~~~ 324 (426)
++|++..+..|+.+++.-.... ... ....+ ..... ...+.+.+..+ |+. ......
T Consensus 69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~ 146 (638)
T PRK10636 69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLERP 146 (638)
T ss_pred EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcCc
Confidence 8886544444555554211000 000 00000 00000 01223344444 453 345667
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEE
Q 014366 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i 403 (426)
..+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|||+|||+.+.+. .||+|++|++|++
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i 224 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSL 224 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEE
Confidence 7899999999999999999999999999999999999999999999876 469999999999986 7999999999999
Q ss_pred EE-eccccc
Q 014366 404 EE-LNRSTL 411 (426)
Q Consensus 404 ~e-~g~~~~ 411 (426)
+. .|+...
T Consensus 225 ~~~~g~~~~ 233 (638)
T PRK10636 225 FEYTGNYSS 233 (638)
T ss_pred EEecCCHHH
Confidence 74 565543
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.4e-37 Score=280.52 Aligned_cols=155 Identities=26% Similarity=0.325 Sum_probs=128.7
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 281 (426)
.++|+|+||++++|++++|+||||||||||++++. +++|++.++|.. .. ..++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~----~~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PK----FSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-cc----cccccEEEEhH-----------
Confidence 46899999999999999999999999999999985 379999998752 11 12345788877
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc-ccCCCCCCCChHHHHHHHHHHHhcCC--CCEEEeeccCCCC
Q 014366 282 NIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGGQRQRLAIARALYQN--SSVLILDEATSAL 358 (426)
Q Consensus 282 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~~~g~~LSgGqkQRl~iARal~~~--p~illlDEpts~L 358 (426)
.++++..+ +.. .++.++.+||||||||++||||++.+ |+++||||||++|
T Consensus 68 ----------------~~~l~~~~-----------L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~L 120 (176)
T cd03238 68 ----------------LQFLIDVG-----------LGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGL 120 (176)
T ss_pred ----------------HHHHHHcC-----------CCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccC
Confidence 11222222 222 25567789999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEeCCEE
Q 014366 359 DSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDNGKL 403 (426)
Q Consensus 359 D~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~G~i 403 (426)
|+.+.+.+.+.|+++. .++|||++||+++.+..||++++|++|+.
T Consensus 121 D~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 121 HQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 9999999999999875 47899999999999889999999977543
No 353
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.2e-38 Score=276.16 Aligned_cols=219 Identities=24% Similarity=0.369 Sum_probs=173.6
Q ss_pred EEEEeEEEEeCCC-------CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH
Q 014366 188 VKFCNISFKYADN-------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS 260 (426)
Q Consensus 188 i~~~~v~~~y~~~-------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~ 260 (426)
++++|++++|... ...+++.|||++++|+.+|++|.||||||||.|+|+|..+|++|+|++||+++.--+...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 6778888776422 235899999999999999999999999999999999999999999999999987666666
Q ss_pred HhcceEEEecCCCC-Ccc--cHHHHHcCCCC-CCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 261 LRRHVGLVSQDITL-FSG--TVAENIGYRDL-MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 261 ~r~~i~~v~Q~~~l-f~~--ti~eni~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
..++|-++||||.- |+- .|-.-+..... ..+.+ .+++.+-++.+|+ +|+- ..-.+..||.||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL------~Pdh----an~~~~~la~~Q 154 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL------LPDH----ANYYPHMLAPGQ 154 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhcc------Cccc----cccchhhcCchh
Confidence 66789999999973 331 22222221111 11222 2344455555554 4432 122457899999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccc
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~ 409 (426)
|||||+||||+-+|+|+|.||+.++||...+.++.+...++. .|-+-|.|+.++..++ .+|+|+||++|+++|.|++
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence 999999999999999999999999999999999999987775 3678999999999998 5999999999999999999
Q ss_pred cccccCc
Q 014366 410 TLLGSNH 416 (426)
Q Consensus 410 ~~l~~~~ 416 (426)
.+++.++
T Consensus 235 ~~v~a~P 241 (267)
T COG4167 235 ADVLASP 241 (267)
T ss_pred hhhhcCC
Confidence 8888765
No 354
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4.2e-37 Score=329.67 Aligned_cols=207 Identities=29% Similarity=0.337 Sum_probs=156.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 3 ~l~i~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 3 LISIHGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred EEEEeeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 4899999999975 359999999999999999999999999999999999999999999998631 257
Q ss_pred EEecCCCCC-cccHHHHHcCCCC----------------CCCCCHHHHHHH------HH-------HhchHHHHHhcCCC
Q 014366 267 LVSQDITLF-SGTVAENIGYRDL----------------MTKIDMERVEHT------AR-------TANADEFVRTLPQG 316 (426)
Q Consensus 267 ~v~Q~~~lf-~~ti~eni~~~~~----------------~~~~~~~~~~~~------~~-------~~~l~~~~~~lp~g 316 (426)
+++|++... .+++.+++..+.. ......+.+... +. ...+.+.++.+ |
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g 147 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G 147 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence 777765322 2456555421100 000000000000 00 01123334443 3
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEE
Q 014366 317 YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRV 395 (426)
Q Consensus 317 ~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i 395 (426)
+. ......+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++. .|||+|||+.+.+. .||+|
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRNMATRI 223 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHhcCeE
Confidence 43 255678999999999999999999999999999999999999999999998873 59999999999986 69999
Q ss_pred EEEeCCEEEE-ecccccc
Q 014366 396 FLLDNGKLEE-LNRSTLL 412 (426)
Q Consensus 396 ~vl~~G~i~e-~g~~~~l 412 (426)
++|++|+++. .|+...+
T Consensus 224 ~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 224 VDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred EEEECCEEEEecCCHHHH
Confidence 9999999975 4765543
No 355
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=5.7e-38 Score=331.96 Aligned_cols=193 Identities=27% Similarity=0.333 Sum_probs=156.7
Q ss_pred EeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEE-----------EcCEeCCCCCHH
Q 014366 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL-----------VDDHDVQNIRLD 259 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~-----------~~g~~i~~~~~~ 259 (426)
++++++|+++ ..+|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. ++|.++.++..+
T Consensus 77 ~~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 77 EEPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred cCceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 3488999753 35899999 9999999999999999999999999999999999997 899887643211
Q ss_pred --HHhcceE----EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 260 --SLRRHVG----LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 260 --~~r~~i~----~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
..+.+++ |++|.|.+|.+|++||+.... ..+++.++++..++.+. .+....+||||||
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~-----~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~ 218 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD-----ERGKLDEVVERLGLENI-----------LDRDISELSGGEL 218 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhh-----HHHHHHHHHHHcCCchh-----------hcCChhhCCHHHH
Confidence 1112344 455556677789999996421 12445556666555443 3445679999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCC
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNG 401 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G 401 (426)
||++|||||+++|++||||||||+||+.++..+.+.|+++.+++|+|+|||+++.+. .||+|++|+++
T Consensus 219 qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 219 QRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999855889999999999986 69999999873
No 356
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.7e-37 Score=262.37 Aligned_cols=197 Identities=28% Similarity=0.406 Sum_probs=164.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCCHHHHhc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIRLDSLRR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~I~~~g~~i~~~~~~~~r~ 263 (426)
.+.++||+.+.++. ..|-++||+|.+||++.|.||||||||||+.-+.|.+.++ +|++.+|++++..++.. ++
T Consensus 2 ~l~l~nvsl~l~g~--cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QR 77 (213)
T ss_pred ceeeeeeeecCCCc--eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hh
Confidence 46789999888764 5899999999999999999999999999999999999874 79999999999877643 67
Q ss_pred ceEEEecCCCCCcc-cHHHHHcCCCCCCC---CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 264 HVGLVSQDITLFSG-TVAENIGYRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eni~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
++|++|||+.||+. +|.+|+.|..+..- ........++++.+++.+..+.| .+||||||-||++-
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~ 146 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALL 146 (213)
T ss_pred heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHH
Confidence 89999999999976 99999998654221 11233456778888888777766 69999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHH-Hc-CCceEEEeccChHHHHhcCEEEEE
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDR-LL-GHHTVLVIAHHLETVMMAKRVFLL 398 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~-~~-~~~tvi~itH~~~~~~~~D~i~vl 398 (426)
|+|+..|+.++||||+|.||..-+..+.+..-. .+ .+-.+++||||.+.+..-.||+.|
T Consensus 147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 147 RALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 999999999999999999999988888887643 32 367889999999988755566655
No 357
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.7e-37 Score=352.49 Aligned_cols=203 Identities=24% Similarity=0.268 Sum_probs=165.6
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC----CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY----DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG 277 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~----~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 277 (426)
+++|+|+|+++++||+++|+||||||||||+|+|+|.. +|++|+|.+||+++.+.. ..+|+.++||+|++.+++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 35899999999999999999999999999999999986 579999999999876443 3456779999999988864
Q ss_pred -cHHHHHcCCCCCC-------CCCHHHH-----HHHHHHhchHHHHHhcCCCcccccCC-CCCCCChHHHHHHHHHHHhc
Q 014366 278 -TVAENIGYRDLMT-------KIDMERV-----EHTARTANADEFVRTLPQGYNTHIGP-RGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 278 -ti~eni~~~~~~~-------~~~~~~~-----~~~~~~~~l~~~~~~lp~g~~t~~~~-~g~~LSgGqkQRl~iARal~ 343 (426)
||+||+.++.... +.+.++. +.+++..++.+ -.+|.+|+ ....|||||||||+|||||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-------~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH-------TRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc-------ccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 9999998742110 1122221 22333333332 34666664 56799999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccCh-HHH-HhcCEEEEEeCCEEEEecccccc
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHL-ETV-MMAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~-~~~-~~~D~i~vl~~G~i~e~g~~~~l 412 (426)
.+|++++|||||+|||+.+...+.+.|+++.+ ++|+|+++|++ +.+ ..+|+|++|++|+++..|+++++
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 99999999999999999999999999999853 68999999997 455 57999999999999999988655
No 358
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.9e-36 Score=313.43 Aligned_cols=207 Identities=32% Similarity=0.414 Sum_probs=164.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ +++++|+||++.+|+++||||+||||||||+|+|+|...|++|+|...+. -+++
T Consensus 3 ~i~~~~ls~~~g~--~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~ 69 (530)
T COG0488 3 MITLENLSLAYGD--RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVG 69 (530)
T ss_pred eEEEeeeEEeeCC--ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEE
Confidence 5899999999965 46999999999999999999999999999999999999999999987641 2599
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHH------------------HH-------hchHHHHHhcCCCcccc
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTA------------------RT-------ANADEFVRTLPQGYNTH 320 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~------------------~~-------~~l~~~~~~lp~g~~t~ 320 (426)
|++|++.+.+. ||.|.+..+......-..+.+.+. +. +.+...+..+ |+...
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~~ 147 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPDE 147 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCcc
Confidence 99999999865 999998765321000001111110 00 1222233333 34444
Q ss_pred cCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEe
Q 014366 321 IGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLD 399 (426)
Q Consensus 321 ~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~ 399 (426)
..+..+||||||.|++|||||+.+|++|||||||++||.++...+.+.|.+.. + |+|+||||-.++. .|++|+.++
T Consensus 148 -~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~I~~ld 224 (530)
T COG0488 148 -DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATHILELD 224 (530)
T ss_pred -cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhheEEec
Confidence 66778999999999999999999999999999999999999999999998764 4 9999999999996 699999999
Q ss_pred CCEEEE-eccccc
Q 014366 400 NGKLEE-LNRSTL 411 (426)
Q Consensus 400 ~G~i~e-~g~~~~ 411 (426)
+|++.. .|+.+.
T Consensus 225 ~g~l~~y~Gny~~ 237 (530)
T COG0488 225 RGKLTPYKGNYSS 237 (530)
T ss_pred CCceeEecCCHHH
Confidence 998864 455443
No 359
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.7e-36 Score=277.26 Aligned_cols=191 Identities=26% Similarity=0.347 Sum_probs=159.2
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCC--cccH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF--SGTV 279 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf--~~ti 279 (426)
.++|+||||++++||.+||+|+||||||||+|+|+|.|+|++|+|.++|.- +++..-..=| +.|.
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v-------------~~li~lg~Gf~pelTG 106 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV-------------APLIELGAGFDPELTG 106 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE-------------ehhhhcccCCCcccch
Confidence 368999999999999999999999999999999999999999999999853 2222211113 3599
Q ss_pred HHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccC
Q 014366 280 AENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355 (426)
Q Consensus 280 ~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpt 355 (426)
+||+.+.....+.+ ++.+++..+-+++.+|++. +..++|.||+-|+++|-|...+|+|||+||..
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-----------PvktYSSGM~aRLaFsia~~~~pdILllDEvl 175 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-----------PVKTYSSGMYARLAFSVATHVEPDILLLDEVL 175 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-----------chhhccHHHHHHHHHhhhhhcCCCEEEEehhh
Confidence 99997532222223 3455667777788888765 56899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH-cCCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 356 SALDSRSELLVRQAVDRL-LGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 356 s~LD~~~~~~i~~~l~~~-~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
+.-|+.=.++=.+.+.++ .+++|+|+|||+++.++ .|||+++|++|++...|++++..+..
T Consensus 176 avGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y 238 (249)
T COG1134 176 AVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAY 238 (249)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHH
Confidence 999999988888888888 56799999999999996 79999999999999999998776543
No 360
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=3.6e-34 Score=288.02 Aligned_cols=364 Identities=16% Similarity=0.216 Sum_probs=259.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 014366 26 VIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELLKKRKMKALIPQTVQL-IY 104 (426)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 104 (426)
+...+.+.+.+..-++.+..++..-.-.+...+.+.|-.|+.+..+....+...++..+...+...++-....+..+ -+
T Consensus 242 i~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Y 321 (659)
T KOG0060|consen 242 INKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDY 321 (659)
T ss_pred HHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666667777777777788888999999999998887666655554443332222222111111111 12
Q ss_pred HHHHHHHH-HHHHHH---hCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc----
Q 014366 105 FGALFILC-GGSLLV---SGGSFDGCSLVSFITS----LVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKV---- 172 (426)
Q Consensus 105 ~~~~~~~~-~g~~lv---~~g~l~~g~l~~~~~~----~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~---- 172 (426)
++.++..+ ++.-+. ..+.++...+...+.. ...+++.+..+.....++.+-..-..|+.++++.-.+.
T Consensus 322 lg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~ 401 (659)
T KOG0060|consen 322 LGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGS 401 (659)
T ss_pred HHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCC
Confidence 22222111 111111 2345677776655543 22344555556656666666667778887765421100
Q ss_pred ----------cC-------CCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHH
Q 014366 173 ----------IE-------KPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL 235 (426)
Q Consensus 173 ----------~~-------~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll 235 (426)
.+ .++.....+.+..|++++|+++-|++...+++|+||+|+.|+.+.|.||||||||+|++.+
T Consensus 402 ~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvl 481 (659)
T KOG0060|consen 402 QECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVL 481 (659)
T ss_pred cchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHH
Confidence 00 0000111122356999999999987555678889999999999999999999999999999
Q ss_pred hcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCC-----CCCCCCHHHHHHHHHHhchHHHH
Q 014366 236 LRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRD-----LMTKIDMERVEHTARTANADEFV 310 (426)
Q Consensus 236 ~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~-----~~~~~~~~~~~~~~~~~~l~~~~ 310 (426)
.|+++..+|++.--...- -+.+-|+||.|+.-.||.||-+.|+. .....+++++.+.++.+++.+.+
T Consensus 482 ggLWp~~~G~l~k~~~~~--------~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~ 553 (659)
T KOG0060|consen 482 GGLWPSTGGKLTKPTDGG--------PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLL 553 (659)
T ss_pred hcccccCCCeEEecccCC--------CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHH
Confidence 999999999997533210 14589999999988999999999872 22346788999999999999988
Q ss_pred HhcCCCcccccC-CCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHH
Q 014366 311 RTLPQGYNTHIG-PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETV 389 (426)
Q Consensus 311 ~~lp~g~~t~~~-~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 389 (426)
++. +|+|+.+. +-...||+||+||+|+||.++.+|++-+|||.|||+|.+.|..+.+.+++. +.|.|-|+||.+..
T Consensus 554 ~r~-ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~ 630 (659)
T KOG0060|consen 554 ERE-GGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLW 630 (659)
T ss_pred HHh-CCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHH
Confidence 886 48987665 457899999999999999999999999999999999999999999999876 78999999999999
Q ss_pred HhcCEEEEEeC
Q 014366 390 MMAKRVFLLDN 400 (426)
Q Consensus 390 ~~~D~i~vl~~ 400 (426)
++=|.++-|+.
T Consensus 631 kfHd~~L~~~g 641 (659)
T KOG0060|consen 631 KFHDYVLRMDG 641 (659)
T ss_pred hhhhEEEEecC
Confidence 99999999975
No 361
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-36 Score=261.12 Aligned_cols=218 Identities=22% Similarity=0.308 Sum_probs=170.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCE-----eCCCCCHHHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH-----DVQNIRLDSL 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~-----~i~~~~~~~~ 261 (426)
-++++++|+.|++. .-.+||||++.|||..+|||+||||||||++||++-+.|+.|+|.+.-. ++-.++..+.
T Consensus 6 LL~V~~lsk~Yg~~--~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 6 LLSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred ceeehhhhhhhCCC--cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 47899999999865 4789999999999999999999999999999999999999999998652 3334444333
Q ss_pred ----hcceEEEecCCC--C-CcccHHHHH----c-CCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCC
Q 014366 262 ----RRHVGLVSQDIT--L-FSGTVAENI----G-YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS 329 (426)
Q Consensus 262 ----r~~i~~v~Q~~~--l-f~~ti~eni----~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LS 329 (426)
|...|+|.|+|. | ...|.-.|| . .|.+....-.++ ..+|+++..-. .+.+++.+..+|
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~---------a~~WL~~VEI~-~~RiDD~PrtFS 153 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAE---------AQDWLEEVEID-LDRIDDLPRTFS 153 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHH---------HHHHHHhcccC-cccccCcccccc
Confidence 456899999995 2 122333333 1 222211111122 23444443211 245677789999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEe
Q 014366 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEEL 406 (426)
Q Consensus 330 gGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~ 406 (426)
||++||+.|||-|+..|+++++||||.|||..-+.++++.++.+.. +-.++++||++..++ .+||.+||++|+++|.
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 9999999999999999999999999999999999999999998753 569999999999997 6999999999999999
Q ss_pred ccccccccCc
Q 014366 407 NRSTLLGSNH 416 (426)
Q Consensus 407 g~~~~l~~~~ 416 (426)
|-.+....++
T Consensus 234 GLTDrvLDDP 243 (258)
T COG4107 234 GLTDRVLDDP 243 (258)
T ss_pred ccccccccCC
Confidence 9877665543
No 362
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.1e-36 Score=347.94 Aligned_cols=209 Identities=21% Similarity=0.287 Sum_probs=165.5
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc-c
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-G 277 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 277 (426)
..+|+|+|++|++||+++|+||||||||||+|+|+|.++|+ +|+|.+||+++.+.. .|+.++||+|++.+++ .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 35899999999999999999999999999999999999998 999999999886543 2678999999988875 5
Q ss_pred cHHHHHcCCCCCCC----------CCHH----------HHHHHHHHh---------chHHHHHhc--CCCcccccCC-CC
Q 014366 278 TVAENIGYRDLMTK----------IDME----------RVEHTARTA---------NADEFVRTL--PQGYNTHIGP-RG 325 (426)
Q Consensus 278 ti~eni~~~~~~~~----------~~~~----------~~~~~~~~~---------~l~~~~~~l--p~g~~t~~~~-~g 325 (426)
||+||+.|+..... .+.+ +++...+.. -.++.++.+ .+-.||.+|+ ..
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999987421110 0011 110000100 012333333 2234677764 56
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChH-H-HHhcCEEEEEeCC
Q 014366 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLE-T-VMMAKRVFLLDNG 401 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~-~-~~~~D~i~vl~~G 401 (426)
..|||||||||+|||+++.+|++++|||||+|||+.+...+.+.|+++. .++|+|+++|++. . ...||+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 7999999999999999999999999999999999999999999999985 3689999999973 4 4689999999999
Q ss_pred EEEEeccccccc
Q 014366 402 KLEELNRSTLLG 413 (426)
Q Consensus 402 ~i~e~g~~~~l~ 413 (426)
+++..|+++++.
T Consensus 415 ~ivy~G~~~~~~ 426 (1470)
T PLN03140 415 QIVYQGPRDHIL 426 (1470)
T ss_pred eEEEeCCHHHHH
Confidence 999999877654
No 363
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-36 Score=281.50 Aligned_cols=205 Identities=28% Similarity=0.388 Sum_probs=157.3
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEe-cCCCCC-cccHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS-QDITLF-SGTVA 280 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~-Q~~~lf-~~ti~ 280 (426)
++++|+||+|++|++++++|+|||||||++|+|+|++.|++|.|.++|.+--+ +.+++-+++++|+ |...+. ...+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechhh
Confidence 58999999999999999999999999999999999999999999999987544 2334444566554 433332 22344
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCH
Q 014366 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (426)
Q Consensus 281 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~ 360 (426)
|-+.......+.++++..+-++ .+.+-| +++..+..+...||-|||.|..||.||+++|+||+|||||-+||.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~-----~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV 189 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLD-----FLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHH-----HHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch
Confidence 4332211112334443333221 122222 455556667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 361 RSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 361 ~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
..+..|.+.+++.. .+.||+..||+++.+. .||||++|++|+++..|+.+.|..+
T Consensus 190 ~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 190 NAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred hHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 99999999999875 4689999999999885 8999999999999998887666543
No 364
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=7e-36 Score=321.57 Aligned_cols=218 Identities=22% Similarity=0.282 Sum_probs=161.2
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC---CCCccEEEEcCEeCCCC--CH--
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY---DPLSGCILVDDHDVQNI--RL-- 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~---~p~~G~I~~~g~~i~~~--~~-- 258 (426)
..|+++|++|+|++. ++|+|+||+|++|+++|||||||||||||+++|+|.. .|++|+|.+.++++... +.
T Consensus 176 ~~I~i~nls~~y~~~--~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 176 KDIHMENFSISVGGR--DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eeEEEceEEEEeCCC--EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 469999999999753 5999999999999999999999999999999999864 58899998766543211 11
Q ss_pred ----------HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCH----HHHHHHHHHhch----------HHHHHhcC
Q 014366 259 ----------DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM----ERVEHTARTANA----------DEFVRTLP 314 (426)
Q Consensus 259 ----------~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l----------~~~~~~lp 314 (426)
..+++.+++++|++.+...+..+|...... ...+. +++.++++..++ .+.+..+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANK-DGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccc-cccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 112445888999876543344444322110 11111 223333332221 2223332
Q ss_pred CCcc-cccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hc
Q 014366 315 QGYN-THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MA 392 (426)
Q Consensus 315 ~g~~-t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~ 392 (426)
|++ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||+.+.+. .|
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVV 408 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhC
Confidence 332 2234456899999999999999999999999999999999999999999999887 579999999999986 69
Q ss_pred CEEEEEeCCEEE-Eecccc
Q 014366 393 KRVFLLDNGKLE-ELNRST 410 (426)
Q Consensus 393 D~i~vl~~G~i~-e~g~~~ 410 (426)
|+|++|++|+++ ..|+.+
T Consensus 409 d~i~~l~~g~i~~~~g~~~ 427 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYD 427 (718)
T ss_pred CEEEEEECCEEEEeCCCHH
Confidence 999999999996 456554
No 365
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.8e-35 Score=313.67 Aligned_cols=218 Identities=32% Similarity=0.457 Sum_probs=181.5
Q ss_pred ccEEEEeEEEEeCCC---CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC---CccEEEEcCEeCCCCCHH
Q 014366 186 GDVKFCNISFKYADN---MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP---LSGCILVDDHDVQNIRLD 259 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~---~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p---~~G~I~~~g~~i~~~~~~ 259 (426)
..++++|++..-++. .+.+|+|||.+++|||+.||+||||||||||+++|+|..++ .+|+|++||++ .+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---Cchh
Confidence 468899999888654 36799999999999999999999999999999999999974 78999999954 3456
Q ss_pred HHhcceEEEecCCCCCcc-cHHHHHcCCCCC---CCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCC-CCCCCCh
Q 014366 260 SLRRHVGLVSQDITLFSG-TVAENIGYRDLM---TKID----MERVEHTARTANADEFVRTLPQGYNTHIGP-RGSSLSG 330 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~~-ti~eni~~~~~~---~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~-~g~~LSg 330 (426)
.+++..|||.||..+++. ||+|++.|.... ...+ ++++++.++..++.+.- ||.+|. ....+||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~-------~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCA-------DTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhc-------cceecCCCCCcccc
Confidence 788999999999999875 999999764211 1112 34455566666655332 566653 3468999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHH--HHhcCEEEEEeCCEEEEec
Q 014366 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLET--VMMAKRVFLLDNGKLEELN 407 (426)
Q Consensus 331 GqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~--~~~~D~i~vl~~G~i~e~g 407 (426)
|||+|++||.-++.||+||+|||||||||+.+...+.+.|+++. +|+|||++=|+++. ....|++++|.+|+++..|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999999985 58999999999953 4679999999999999999
Q ss_pred cccccc
Q 014366 408 RSTLLG 413 (426)
Q Consensus 408 ~~~~l~ 413 (426)
+++++.
T Consensus 254 ~~~~~~ 259 (613)
T KOG0061|consen 254 SPRELL 259 (613)
T ss_pred CHHHHH
Confidence 886543
No 366
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-36 Score=263.29 Aligned_cols=189 Identities=23% Similarity=0.333 Sum_probs=160.2
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
++.+|++..-+. ..++.++||++.+||.+-|.||||||||||+++|+|+.+|++|+|+++|.++... +++.++.+-|
T Consensus 3 L~a~~L~~~R~e--~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~-~~~~~~~l~y 79 (209)
T COG4133 3 LEAENLSCERGE--RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV-RESYHQALLY 79 (209)
T ss_pred chhhhhhhccCc--ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccc-hhhHHHHHHH
Confidence 455777765543 4699999999999999999999999999999999999999999999999988764 3445778889
Q ss_pred EecCCCCCc-ccHHHHHcCCCCCCC-CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 268 VSQDITLFS-GTVAENIGYRDLMTK-IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 268 v~Q~~~lf~-~ti~eni~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
+-..+-+=+ .|++||+.|...... .+.+.++++++.+++..+.+ + +..+||.|||+|+||||-++..
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~d-l----------p~~~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED-L----------PVGQLSAGQQRRVALARLWLSP 148 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccc-c----------chhhcchhHHHHHHHHHHHcCC
Confidence 999998864 599999998655333 35678899999998876543 2 4579999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM 390 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~ 390 (426)
+|++||||||++||.+.+..+-..+.... ++-.||..||.+--+.
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 99999999999999999999999987764 4679999999976543
No 367
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=2.8e-35 Score=255.01 Aligned_cols=136 Identities=48% Similarity=0.769 Sum_probs=122.4
Q ss_pred ceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc-cHHHHH
Q 014366 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENI 283 (426)
Q Consensus 205 l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eni 283 (426)
|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|.++...+....++.++|++|++.+|+. |++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 6899999999999999999999999999999999999999999999999987788889999999999999876 79999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCC
Q 014366 284 GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356 (426)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts 356 (426)
...++++++++.+++.+ ..++.++.++..||||||||++||||++++|+++|||||||
T Consensus 80 --------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 --------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp --------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred --------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 13456777777776655 24566777889999999999999999999999999999997
No 368
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=4.2e-34 Score=268.89 Aligned_cols=190 Identities=24% Similarity=0.347 Sum_probs=127.9
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHH-HHHhcCCCCCccEEEEcC-------EeCCCC---CHHHHh-cceEEEe
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLA-KLLLRLYDPLSGCILVDD-------HDVQNI---RLDSLR-RHVGLVS 269 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl-~ll~g~~~p~~G~I~~~g-------~~i~~~---~~~~~r-~~i~~v~ 269 (426)
.++|+++||+|++||+++|+||||||||||+ ..+.. +|++.+.+ ..+... .....+ ...++..
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 4699999999999999999999999999995 44431 34332210 000000 001111 1244455
Q ss_pred cCCCC-C-cc-cHH---HHHcCCCCC-CCCCHHHHHHHHHHhchHHHHHhcCCCccc-ccCCCCCCCChHHHHHHHHHHH
Q 014366 270 QDITL-F-SG-TVA---ENIGYRDLM-TKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 270 Q~~~l-f-~~-ti~---eni~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~~~g~~LSgGqkQRl~iARa 341 (426)
|++.. + +. ++. +...+.... ......+.. +.++.+ |+.. ..+..+.+||||||||++||||
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~lara 151 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERL---------GFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQ 151 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHH---------HHHHHC--CCCcccccCccCcCCHHHHHHHHHHHH
Confidence 54432 1 11 322 221110000 000011111 223333 3433 3566788999999999999999
Q ss_pred hcCCC--CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEE------eCCEEEEec
Q 014366 342 LYQNS--SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLL------DNGKLEELN 407 (426)
Q Consensus 342 l~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl------~~G~i~e~g 407 (426)
++.+| +++||||||++||+.+.+.+.+.|+++. ++.|+|+|||+++.+..||++++| ++|+|+++|
T Consensus 152 l~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 152 IGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 99998 5999999999999999999999999875 468999999999988899999999 999999886
No 369
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=4.6e-33 Score=288.31 Aligned_cols=200 Identities=31% Similarity=0.402 Sum_probs=167.4
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
.-++++|++++|+++ +++++++||.|.+|+++||+||||+|||||+|+|+|...|.+|+|.+.-. -++
T Consensus 320 ~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~i 387 (530)
T COG0488 320 LVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKI 387 (530)
T ss_pred eeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEE
Confidence 459999999999765 57999999999999999999999999999999999999999999987531 259
Q ss_pred EEEecCCC-CCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc
Q 014366 266 GLVSQDIT-LFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 266 ~~v~Q~~~-lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
||.+|+.. +++ .|+.|++.-..+ +..+..++..+...+....-. ..+...||||||-|+.+|+.++
T Consensus 388 gyf~Q~~~~l~~~~t~~d~l~~~~~--~~~e~~~r~~L~~f~F~~~~~----------~~~v~~LSGGEk~Rl~La~ll~ 455 (530)
T COG0488 388 GYFDQHRDELDPDKTVLEELSEGFP--DGDEQEVRAYLGRFGFTGEDQ----------EKPVGVLSGGEKARLLLAKLLL 455 (530)
T ss_pred EEEEehhhhcCccCcHHHHHHhhCc--cccHHHHHHHHHHcCCChHHH----------hCchhhcCHhHHHHHHHHHHhc
Confidence 99999984 454 399999975432 222567777777776643322 2356799999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEe-cccccc
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEEL-NRSTLL 412 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~-g~~~~l 412 (426)
.+|.+|||||||+.||.++...+.++|.+.. -|||+||||..++. .|++++.+++ ++.+. |..++.
T Consensus 456 ~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~--Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 456 QPPNLLLLDEPTNHLDIESLEALEEALLDFE--GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 9999999999999999999999999998874 49999999999997 6999999998 77665 554443
No 370
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=4.7e-34 Score=314.83 Aligned_cols=219 Identities=24% Similarity=0.393 Sum_probs=189.6
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC-CHHHHhcc
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI-RLDSLRRH 264 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~-~~~~~r~~ 264 (426)
..+.++|+++.|+.... +++++|+.|++||+.|+.|+|||||||++|++.|..+|++|++.++|.++..- +..+.+++
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 45889999999987543 99999999999999999999999999999999999999999999999998754 33458999
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
+||+||+..+++. |.||.+.+.....+... +.++..++..++.+..+. ....+|||+|+|+++|
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~-----------~~~~ySgG~kRkLs~a 710 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK-----------QVRTYSGGNKRRLSFA 710 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc-----------chhhCCCcchhhHHHH
Confidence 9999999999865 99999976543333332 335666677776665544 4579999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCC-ceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH-HTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~-~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
-|++.+|++++|||||+|+||.+++.+++.+.+.+++ +.+|+.||.+++.+ .|||+.+|.+|++...|+++++.++.
T Consensus 711 ialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrf 789 (885)
T KOG0059|consen 711 IALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRY 789 (885)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhc
Confidence 9999999999999999999999999999999998764 59999999999997 79999999999999999999887553
No 371
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=244.97 Aligned_cols=203 Identities=28% Similarity=0.375 Sum_probs=156.5
Q ss_pred cEEEEeEEEEeCC----C-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCE----eCCCCC
Q 014366 187 DVKFCNISFKYAD----N-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH----DVQNIR 257 (426)
Q Consensus 187 ~i~~~~v~~~y~~----~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~----~i~~~~ 257 (426)
.+.++|++++|.- + .-++++++||+++.|||+++=||||||||||+++|.+-|.|++|+|++... |+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 4788999888741 1 236999999999999999999999999999999999999999999998543 333333
Q ss_pred HHH----HhcceEEEecCCCCCc-ccHHHHHc-----CCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCC
Q 014366 258 LDS----LRRHVGLVSQDITLFS-GTVAENIG-----YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSS 327 (426)
Q Consensus 258 ~~~----~r~~i~~v~Q~~~lf~-~ti~eni~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~ 327 (426)
+.+ .|+.||||+|--...+ -+..|-+. .|.+ .+...++....+.+.++.+-+-.|| +.+
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~-~~~a~~~a~~Ll~rLnlperLW~La----------PaT 152 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP-REVARAKAADLLTRLNLPERLWSLA----------PAT 152 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCC-HHHHHHHHHHHHHHcCCCHHHhcCC----------Ccc
Confidence 332 3556999999755443 24444432 2221 1112233445566666666665554 479
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeC
Q 014366 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDN 400 (426)
Q Consensus 328 LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~ 400 (426)
+||||+||+.|||.++.+-+||+|||||++||..+++.+.+.|.+.+ +|..+|=|-||-+.-+ .|||++-|..
T Consensus 153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999999999999876 4788999999987765 6999988754
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=100.00 E-value=5.1e-33 Score=256.00 Aligned_cols=164 Identities=23% Similarity=0.302 Sum_probs=132.0
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---------cEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc
Q 014366 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS---------GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS 276 (426)
Q Consensus 206 ~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~---------G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 276 (426)
+++++++++| +++|+||||||||||+++|+|+.+|.. |++.++|++.... ..+++++++||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 6789999999 999999999999999999999986653 4677777765432 2357899999999877
Q ss_pred ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc----CCCCEEEee
Q 014366 277 GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY----QNSSVLILD 352 (426)
Q Consensus 277 ~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~----~~p~illlD 352 (426)
++.. ..+++.++++. + + .......+||||||||++|||+++ .+|++++||
T Consensus 89 --------~~~~----~~~~~~~~l~~----------~-~---~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlD 142 (197)
T cd03278 89 --------YSII----SQGDVSEIIEA----------P-G---KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLD 142 (197)
T ss_pred --------eeEE----ehhhHHHHHhC----------C-C---ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEe
Confidence 2110 12334444443 1 1 123456799999999999999986 567999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 353 EATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 353 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
|||++||+.+...+.+.|+++.++.|+|+|||+++.+..||+++.+..
T Consensus 143 EP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 143 EVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred CCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 999999999999999999998767899999999998889999999864
No 373
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.98 E-value=3.6e-32 Score=259.44 Aligned_cols=194 Identities=26% Similarity=0.411 Sum_probs=139.5
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHh-----c-CC----CCCcc-----------EEEEcCEeCCCCCHH--
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL-----R-LY----DPLSG-----------CILVDDHDVQNIRLD-- 259 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~-----g-~~----~p~~G-----------~I~~~g~~i~~~~~~-- 259 (426)
.-|+|+|++|+.|..++|+|+||||||||++.+. + +. .|..+ -|.+|..++..-+..
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3699999999999999999999999999998652 1 11 12222 356666665432111
Q ss_pred --------HHhc----------------ceEEEecCCCC-CcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcC
Q 014366 260 --------SLRR----------------HVGLVSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLP 314 (426)
Q Consensus 260 --------~~r~----------------~i~~v~Q~~~l-f~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp 314 (426)
++|+ .+.|..++... ...|+.||+.|..... ..++..++ ++.+
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~--~~~~~~~~---------L~~v- 156 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP--KIARKLQT---------LCDV- 156 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh--hHHHHHHH---------HHHc-
Confidence 0111 13333333332 2446666665532211 11222222 3332
Q ss_pred CCccc-ccCCCCCCCChHHHHHHHHHHHhcCC---CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHH
Q 014366 315 QGYNT-HIGPRGSSLSGGQRQRLAIARALYQN---SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETV 389 (426)
Q Consensus 315 ~g~~t-~~~~~g~~LSgGqkQRl~iARal~~~---p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~ 389 (426)
|++. .+++...+|||||+||++|||+|+++ |+++||||||++||+...+.+.+.|+++. ++.|+|+|||+++.+
T Consensus 157 -gL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i 235 (261)
T cd03271 157 -GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVI 235 (261)
T ss_pred -CCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 4544 46777899999999999999999996 79999999999999999999999999875 468999999999999
Q ss_pred HhcCEEEEE------eCCEEEEeccc
Q 014366 390 MMAKRVFLL------DNGKLEELNRS 409 (426)
Q Consensus 390 ~~~D~i~vl------~~G~i~e~g~~ 409 (426)
..||++++| ++|+++++|++
T Consensus 236 ~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 236 KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 999999999 89999999874
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=4.1e-31 Score=251.16 Aligned_cols=189 Identities=22% Similarity=0.303 Sum_probs=131.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHh----------------cCCCCCcc------
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL----------------RLYDPLSG------ 244 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~----------------g~~~p~~G------ 244 (426)
.|+++|. ++|++. .++++++ |++++|+||||||||||+++|+ ++..+.+|
T Consensus 3 ~i~~~nf-ksy~~~--~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 3 QVIIQGF-KSYKDQ--TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEEeCc-cCcccC--cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 4667765 357543 4777776 7899999999999999999998 44455555
Q ss_pred --EEEEcCEeCCC-C--CHHHHhcceEEEecCCCCCcc--cHHHHHcCCCCCCCCCHHHHHHHHHHhchHH---------
Q 014366 245 --CILVDDHDVQN-I--RLDSLRRHVGLVSQDITLFSG--TVAENIGYRDLMTKIDMERVEHTARTANADE--------- 308 (426)
Q Consensus 245 --~I~~~g~~i~~-~--~~~~~r~~i~~v~Q~~~lf~~--ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~--------- 308 (426)
+|.+++.+-.. . .....++.+++++|++.+++. |..|.. ..++..++..
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~---------------~~l~~~gl~~~~~~~~~~q 139 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVM---------------NLLESAGFSRSNPYYIVPQ 139 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHH---------------HHHHHcCCCCCCCcEEEEc
Confidence 55555532110 0 112345667888877766542 443332 2222222211
Q ss_pred -HHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc----CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEec
Q 014366 309 -FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIA 383 (426)
Q Consensus 309 -~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~----~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~it 383 (426)
.+..+. ++....++++.+||||||||++||||++ .+|+++||||||++||+.+.+.+.+.|+++.++.|+|++|
T Consensus 140 g~i~~l~-~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~ 218 (243)
T cd03272 140 GKINSLT-NMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTT 218 (243)
T ss_pred CchHHhh-hccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 000000 1222345678899999999999999996 4689999999999999999999999999986677899999
Q ss_pred cChHHHHhcCEEEEEe
Q 014366 384 HHLETVMMAKRVFLLD 399 (426)
Q Consensus 384 H~~~~~~~~D~i~vl~ 399 (426)
|+.+....||++++|+
T Consensus 219 h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 219 FRPELLEVADKFYGVK 234 (243)
T ss_pred cCHHHHhhCCEEEEEE
Confidence 9988778999999986
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.97 E-value=5e-31 Score=245.87 Aligned_cols=190 Identities=18% Similarity=0.197 Sum_probs=138.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEe-CCCEEEEECCCCCcHHHHHHHHhc-CCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIR-AGETVALIGPSGGGKSTLAKLLLR-LYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~-~Ge~~~ivG~sGsGKSTLl~ll~g-~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
.|+++|+. +|.+. ++++|+.. +|++++|+||||||||||+++|++ ++.+..+....+ .....+.....+..
T Consensus 5 ~i~l~nf~-~y~~~-----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE-----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc-----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEE
Confidence 58889987 77542 56777654 589999999999999999999994 665555555543 11112222344567
Q ss_pred eEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHH--HHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTA--RTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 265 i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
|++++|++.-.. .+..++ ..+.+...+.. +..+ +++.++.++.+||||||||++||||+
T Consensus 78 v~~~f~~~~~~~----~~~r~~----gl~~~~~~~~~~l~~g~-----------l~~~l~~~~~~lS~G~~~r~~la~al 138 (213)
T cd03279 78 VSFTFQLGGKKY----RVERSR----GLDYDQFTRIVLLPQGE-----------FDRFLARPVSTLSGGETFLASLSLAL 138 (213)
T ss_pred EEEEEEECCeEE----EEEEec----CCCHHHHHHhhhhhhcc-----------hHHHhcCCccccCHHHHHHHHHHHHH
Confidence 999999874221 122222 23333333221 2222 34455667789999999999999999
Q ss_pred cC----------CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCE
Q 014366 343 YQ----------NSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 343 ~~----------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~ 402 (426)
+. +|+++||||||++||+.+.+.+.+.++++.+ +.|+|+|||+++.+. .||+++++++|-
T Consensus 139 ~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 139 ALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred HhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 84 6789999999999999999999999998865 789999999999886 699999999985
No 376
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=7.4e-32 Score=234.69 Aligned_cols=210 Identities=27% Similarity=0.374 Sum_probs=174.1
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
++++||+.+- -|-.+|.++..||++-+|||||||||||+..++|+. |-+|+|.++|.++..++..++.++-+|
T Consensus 4 ~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 4 MQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHH
Confidence 5677776532 356789999999999999999999999999999988 679999999999999999999888899
Q ss_pred EecCCC-CCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC--
Q 014366 268 VSQDIT-LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ-- 344 (426)
Q Consensus 268 v~Q~~~-lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~-- 344 (426)
+.|+.. .|...|...+.+..|.. .-..++..++... +++..+++...+|||||.|||-+|-..++
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~-~~a~~i~~i~~~L-----------~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDK-TRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchH-HHHHHHHHHHhhh-----------cccchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 998765 67889999998866531 1112233333333 45566667788999999999999998875
Q ss_pred ---CC--CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChH-HHHhcCEEEEEeCCEEEEeccccccccCc
Q 014366 345 ---NS--SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLE-TVMMAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 345 ---~p--~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~-~~~~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|| ++||+|||.++||...+..+-..|.++. .+.+|||.+||++ +++.||+++.+++|++...|+.++..+.+
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~~ 223 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPP 223 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcChH
Confidence 33 7999999999999999999999998886 4799999999996 67899999999999999999988877654
No 377
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=8.3e-30 Score=258.35 Aligned_cols=216 Identities=25% Similarity=0.384 Sum_probs=171.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~-~~r~~i 265 (426)
-++++|++.. ..++|+||++++||+++|.|--|||+|-++++|.|..++.+|+|.+||+++.-.++. ..+..|
T Consensus 263 ~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi 336 (500)
T COG1129 263 VLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI 336 (500)
T ss_pred EEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence 4667776531 157899999999999999999999999999999999999999999999998877655 567789
Q ss_pred EEEecCCC---CC-cccHHHHHcCCCCCCCCCHH-HHHHHHHHhchHHHHHhcCCCcccc-cCCCCCCCChHHHHHHHHH
Q 014366 266 GLVSQDIT---LF-SGTVAENIGYRDLMTKIDME-RVEHTARTANADEFVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 266 ~~v~Q~~~---lf-~~ti~eni~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~lp~g~~t~-~~~~g~~LSgGqkQRl~iA 339 (426)
+|||.|.. +| ..+|++|+.+.... ..... -+....+.....+++..+ +..+. ......+||||.+||+.||
T Consensus 337 ~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~-~~~~~~~i~~~~e~~~~~~~~~~l--~Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 337 AYVPEDRKSEGLVLDMSIAENITLASLR-RFSRRGLIDRRKERALAERYIRRL--RIKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred EeCCcccccCcCcCCCcHHHheehHhhh-hhccccccChHHHHHHHHHHHHhc--CcccCCccchhhcCCchhhhhHHHH
Confidence 99999864 66 55999999875211 10000 122233333344555554 22221 2346789999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTL 411 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~ 411 (426)
|.|..+|++|||||||-|+|.-++.+|.+.|+++. +|++||+||-++.++- .||||+||++|+++..=+.++
T Consensus 414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999986 5799999999998875 899999999999987554444
No 378
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.97 E-value=1.2e-28 Score=245.24 Aligned_cols=361 Identities=18% Similarity=0.240 Sum_probs=244.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 014366 22 SMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDLCELL---KKRKMKALIPQ 98 (426)
Q Consensus 22 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 98 (426)
+-..+.+.+.++..+...+.....+.+...=...+++-++|-.|+..+.+.++.++..+....... +...+..+..+
T Consensus 276 lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleq 355 (728)
T KOG0064|consen 276 LTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQ 355 (728)
T ss_pred HHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777777777777777888888889999999999999999988887776654332211 11111111111
Q ss_pred HHH-HHHHHHHHHH----HHHHHHHhCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014366 99 TVQ-LIYFGALFIL----CGGSLLVSGGSFD--------GCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDL 165 (426)
Q Consensus 99 ~~~-~~~~~~~~~~----~~g~~lv~~g~l~--------~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~ 165 (426)
+.. -.+.++-.++ .+..-....+... ...++..=-++......+..++..+.++.+-.....|++++
T Consensus 356 F~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~m 435 (728)
T KOG0064|consen 356 FVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTM 435 (728)
T ss_pred HHHHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 111 0000000000 0000011111111 11122222223333456667777788888888888888765
Q ss_pred hcCcc-------------cccCC------CCCCCCC-----CCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEE
Q 014366 166 TKFKS-------------KVIEK------PDAVSLD-----HINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALI 221 (426)
Q Consensus 166 l~~~~-------------~~~~~------~~~~~~~-----~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~iv 221 (426)
++.-. +..+. .+..+.+ .....|.++|+-.--|+++ .++..++|+|++|-.+.|+
T Consensus 436 f~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~-vvv~~Ltf~i~~G~hLLIt 514 (728)
T KOG0064|consen 436 FSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAGD-VLVPKLTFQIEPGMHLLIT 514 (728)
T ss_pred HHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCcc-eeecceeEEecCCceEEEE
Confidence 43110 00000 0000000 0123589999988877764 5899999999999999999
Q ss_pred CCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCC-----CCCCCHHH
Q 014366 222 GPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDL-----MTKIDMER 296 (426)
Q Consensus 222 G~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~-----~~~~~~~~ 296 (426)
||||||||+|+++|.|++|...|...+- .+.++-|+||.|+.--||.||-|-|+.. ..+..+++
T Consensus 515 GPNGCGKSSLfRILggLWPvy~g~L~~P-----------~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~d 583 (728)
T KOG0064|consen 515 GPNGCGKSSLFRILGGLWPVYNGLLSIP-----------RPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQD 583 (728)
T ss_pred CCCCccHHHHHHHHhccCcccCCeeecC-----------CCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHH
Confidence 9999999999999999999988876541 1345999999999877899999988643 13567888
Q ss_pred HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCC
Q 014366 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH 376 (426)
Q Consensus 297 ~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~ 376 (426)
++..++.+.++..+++ ..|+|...+- -.-||||||||+++||.++++|+.-+|||.||+..++-|..+.+..+.. +
T Consensus 584 L~~iL~~v~L~~i~qr-~~g~da~~dW-kd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--g 659 (728)
T KOG0064|consen 584 LEAILDIVHLEHILQR-EGGWDAVRDW-KDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA--G 659 (728)
T ss_pred HHHHHHHhhHHHHHHh-ccChhhhccH-HhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc--C
Confidence 9999999999887766 4466655443 3579999999999999999999999999999999999999999998775 6
Q ss_pred ceEEEeccChHHHHhcCEEEEE
Q 014366 377 HTVLVIAHHLETVMMAKRVFLL 398 (426)
Q Consensus 377 ~tvi~itH~~~~~~~~D~i~vl 398 (426)
-+.|-||||++..++-...+-.
T Consensus 660 i~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 660 ISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred ceEEEeecCccHHHHHHHHHhc
Confidence 7999999999998765555544
No 379
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=3.2e-30 Score=246.36 Aligned_cols=204 Identities=18% Similarity=0.201 Sum_probs=144.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ccEEEEcCE-eCCCCC-H-HHHh
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDH-DVQNIR-L-DSLR 262 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~-~G~I~~~g~-~i~~~~-~-~~~r 262 (426)
.|+++|. ++|.+. .++. .+. ..+++|+||||||||||+++|++++.|+ .|++++.|. ++-... . ...+
T Consensus 5 ~~~~~~f-~~~~~~--~~~~----~~~-~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~ 76 (251)
T cd03273 5 EIILDGF-KSYATR--TVIS----GFD-PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITK 76 (251)
T ss_pred EEEEeCc-cccCcC--Eeec----cCC-CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcE
Confidence 4666665 456432 1111 233 4599999999999999999999999886 468888776 432111 1 1224
Q ss_pred cceEEEecCCC---------CC-cccHHHHHcCCCCC------CCCCHHHHHHHHHHhchH--HH--------HHhcCCC
Q 014366 263 RHVGLVSQDIT---------LF-SGTVAENIGYRDLM------TKIDMERVEHTARTANAD--EF--------VRTLPQG 316 (426)
Q Consensus 263 ~~i~~v~Q~~~---------lf-~~ti~eni~~~~~~------~~~~~~~~~~~~~~~~l~--~~--------~~~lp~g 316 (426)
..+++++|++. +. ..||.+|+..+... .....+++.++++.+++. .. +..+- .
T Consensus 77 ~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~-~ 155 (251)
T cd03273 77 ASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVL-N 155 (251)
T ss_pred EEEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHH-H
Confidence 57999999862 22 34888888654311 112345666677776653 00 00000 0
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHhc----CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhc
Q 014366 317 YNTHIGPRGSSLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMA 392 (426)
Q Consensus 317 ~~t~~~~~g~~LSgGqkQRl~iARal~----~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~ 392 (426)
........+.+||||||||++||||++ .+|+++|+||||++||+.+.+.+.+.|+++.++.|+|+|||+.+.+..|
T Consensus 156 ~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~ 235 (251)
T cd03273 156 MGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNA 235 (251)
T ss_pred hHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhC
Confidence 012344567899999999999999997 6889999999999999999999999999987778999999998888899
Q ss_pred CEEEEEe
Q 014366 393 KRVFLLD 399 (426)
Q Consensus 393 D~i~vl~ 399 (426)
|+++-+.
T Consensus 236 d~v~~~~ 242 (251)
T cd03273 236 NVLFRTR 242 (251)
T ss_pred CEEEEEE
Confidence 9998764
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.96 E-value=1.6e-29 Score=234.08 Aligned_cols=163 Identities=21% Similarity=0.289 Sum_probs=128.6
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHh----cCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCC-----CCCc-cc
Q 014366 209 NLHIRAGETVALIGPSGGGKSTLAKLLL----RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDI-----TLFS-GT 278 (426)
Q Consensus 209 sl~i~~Ge~~~ivG~sGsGKSTLl~ll~----g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~-----~lf~-~t 278 (426)
++++.+| +++|+||||||||||+++|. |..+|++|.+..+...+.. ...+..+++++|++ .++. .|
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 4567777 99999999999999999994 9988988877622222222 23456799999998 3333 38
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH------HHHHHHhcCCCCEEEee
Q 014366 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR------LAIARALYQNSSVLILD 352 (426)
Q Consensus 279 i~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR------l~iARal~~~p~illlD 352 (426)
+.||+.+.. .+++.+ .+ ++.+.+||+||+|| ++||||++.+|++++||
T Consensus 93 ~~~~~~~~~------~~~~~~---------~~-----------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlD 146 (204)
T cd03240 93 ILENVIFCH------QGESNW---------PL-----------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALD 146 (204)
T ss_pred Hhhceeeec------hHHHHH---------HH-----------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEc
Confidence 999987641 222221 22 23457999999996 79999999999999999
Q ss_pred ccCCCCCHHHHH-HHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCC
Q 014366 353 EATSALDSRSEL-LVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 353 Epts~LD~~~~~-~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|||++||+.+.. .+.+.++++.+ +.|+|++||+++.+..||++++|++.
T Consensus 147 EP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~ 198 (204)
T cd03240 147 EPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKD 198 (204)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeC
Confidence 999999999999 99999998864 67999999999988899999999753
No 381
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=3.9e-30 Score=239.43 Aligned_cols=186 Identities=18% Similarity=0.265 Sum_probs=133.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh-cce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR-RHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r-~~i 265 (426)
.|+++|.. +|++. .+++++++ ++++|+|||||||||++++|. +++|.+.. ..| +++
T Consensus 5 ~l~l~nfk-~~~~~--~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~i 61 (212)
T cd03274 5 KLVLENFK-SYAGE--QVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKKL 61 (212)
T ss_pred EEEEECcc-cCCCC--eeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----HhhhhhH
Confidence 57788875 77643 58898887 899999999999999999997 33443321 223 579
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCC--------CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTK--------IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
++++|+..+++. |+++++.+...... ...+..........+. .+..+|++.++ ....||+|||||+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~-~~~~L~~~~~~----~~~~lS~G~~~r~ 136 (212)
T cd03274 62 SDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVE-QIAQMPKKSWK----NISNLSGGEKTLS 136 (212)
T ss_pred HHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEE-Eeecccccccc----chhhcCHHHHHHH
Confidence 999999887654 78877765432110 0000000000000111 12233444443 4568999999999
Q ss_pred HHHHHhcC----CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 337 AIARALYQ----NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 337 ~iARal~~----~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+||||++. +|++++|||||++||+.+...+.+.++++.++.|+|++||+.+....|||+++|..
T Consensus 137 ~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 137 SLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 99999963 58999999999999999999999999998777899999999887789999999964
No 382
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.96 E-value=1.8e-29 Score=252.51 Aligned_cols=196 Identities=26% Similarity=0.396 Sum_probs=162.2
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
.-|.++||+|.|+++. .+++++||-|..++.+|+|||||+|||||+|+++|.+.|+.|.|.-.-. .++
T Consensus 388 pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~ 455 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKL 455 (614)
T ss_pred CeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccc
Confidence 3589999999998764 7999999999999999999999999999999999999999999864332 234
Q ss_pred EEEecCCC---CCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 266 GLVSQDIT---LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 266 ~~v~Q~~~---lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
++..|+.. .++.|..|++.-..+. ....+++...+.++++....+..| ..+||+|||.||++||.+
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~-~~~~e~~r~ilgrfgLtgd~q~~p----------~~~LS~Gqr~rVlFa~l~ 524 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPD-EKELEEMRSILGRFGLTGDAQVVP----------MSQLSDGQRRRVLFARLA 524 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccc-cchHHHHHHHHHHhCCCccccccc----------hhhcccccchhHHHHHHH
Confidence 45555433 2456788887522111 245677888899988876555544 479999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEEe
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEEL 406 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~ 406 (426)
+++|.+|+|||||++||.++...+.++|.++. .+||+||||...+. .+++|++.++|.+...
T Consensus 525 ~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~--Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 525 VKQPHLLLLDEPTNHLDIETIDALAEAINEFP--GGVVLVSHDFRLISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred hcCCcEEEecCCCcCCCchhHHHHHHHHhccC--CceeeeechhhHHHHHHHHhHhhccCceeec
Confidence 99999999999999999999999999998874 37999999999996 6999999999987643
No 383
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.95 E-value=1.1e-27 Score=272.52 Aligned_cols=213 Identities=23% Similarity=0.307 Sum_probs=150.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHH---------HHhcCCCCCcc----E----EEEc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAK---------LLLRLYDPLSG----C----ILVD 249 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~---------ll~g~~~p~~G----~----I~~~ 249 (426)
.+++++++. ..|+++||+|++||+++|+|+||||||||++ .+.|...+..+ . |.+|
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 477777652 3799999999999999999999999999999 56665433111 1 3444
Q ss_pred CEeCCCCCH----------HHHh---------c-----ceEEEecC------------------C---------------
Q 014366 250 DHDVQNIRL----------DSLR---------R-----HVGLVSQD------------------I--------------- 272 (426)
Q Consensus 250 g~~i~~~~~----------~~~r---------~-----~i~~v~Q~------------------~--------------- 272 (426)
-.++..... .++| + ...+.++. +
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 433322110 0222 1 12233332 0
Q ss_pred -----CCCcc-cHHHHHcCCCCCC---CCCHHHHHHHHHHhchHHHHHhcCCCcccc-cCCCCCCCChHHHHHHHHHHHh
Q 014366 273 -----TLFSG-TVAENIGYRDLMT---KIDMERVEHTARTANADEFVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 273 -----~lf~~-ti~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-~~~~g~~LSgGqkQRl~iARal 342 (426)
..+.+ ||.||+.++.... ..+.+++.+.+ +.++.+ |++.. +++...+||||||||++|||||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAraL 824 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYEL 824 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHHc--CCcchhhcCccccCCHHHHHHHHHHHHH
Confidence 12333 8888887753210 00112222222 123332 66665 6888899999999999999999
Q ss_pred c---CCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEe------CCEEEEecccccc
Q 014366 343 Y---QNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLD------NGKLEELNRSTLL 412 (426)
Q Consensus 343 ~---~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~------~G~i~e~g~~~~l 412 (426)
+ .+|+++||||||++||+.+.+.+.+.|+++. ++.|||+|||+++.+..||++++|. +|+++..|+++++
T Consensus 825 ~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 825 LAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred hhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 8 6999999999999999999999999999885 4789999999999998999999996 7899999999877
Q ss_pred cc
Q 014366 413 GS 414 (426)
Q Consensus 413 ~~ 414 (426)
.+
T Consensus 905 ~~ 906 (1809)
T PRK00635 905 IH 906 (1809)
T ss_pred Hh
Confidence 64
No 384
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=1.3e-28 Score=267.95 Aligned_cols=201 Identities=28% Similarity=0.378 Sum_probs=168.5
Q ss_pred CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEEcCEeCCCCCHHHHhcceEEEecCCC-CCc
Q 014366 200 NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT-LFS 276 (426)
Q Consensus 200 ~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~--p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~ 276 (426)
+.+.+|+||+=-++||-.+||+|+||||||||+++|+|-.. ..+|+|+++|.+..+ +..++.+|||.|+.. +-.
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 34569999999999999999999999999999999998753 357999999998654 567889999999775 445
Q ss_pred ccHHHHHcCCCCC---CCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC-CE
Q 014366 277 GTVAENIGYRDLM---TKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS-SV 348 (426)
Q Consensus 277 ~ti~eni~~~~~~---~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p-~i 348 (426)
.||||-+.|.... ++.+. +.++++++..++.++- |..||..|..||..||+|+.||--|+.|| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 6999999874321 12232 3456777777777665 44688899999999999999999999999 88
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHH--HHhcCEEEEEeC-CEEEEecccc
Q 014366 349 LILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLET--VMMAKRVFLLDN-GKLEELNRST 410 (426)
Q Consensus 349 lllDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~--~~~~D~i~vl~~-G~i~e~g~~~ 410 (426)
|+|||||||||+++...|++.++++. .|+||++.-|+++. .+..|+++.|++ |+.+..|+..
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 89999999999999999999999986 58999999999975 368999999986 7899998764
No 385
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.95 E-value=1.1e-27 Score=228.24 Aligned_cols=202 Identities=18% Similarity=0.177 Sum_probs=137.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEe-C-C-----CCCHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD-V-Q-----NIRLD 259 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~-i-~-----~~~~~ 259 (426)
.|+++|. .+|.+. . ++...++ +++|+||||||||||+.+|+++..+..|++..++.+ + . ..+..
T Consensus 3 ~i~l~nf-~~~~~~--~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~ 73 (247)
T cd03275 3 RLELENF-KSYKGR--H-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSN 73 (247)
T ss_pred EEEEECc-cccCCC--e-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCc
Confidence 4777886 556432 1 2233344 999999999999999999999998888887654421 1 0 01111
Q ss_pred HHhcceEEEecCCC--CCcccHHHHHc-CCCCCCCCCHHHHHHHHHHhchHH--------------HHHhcCCCcccccC
Q 014366 260 SLRRHVGLVSQDIT--LFSGTVAENIG-YRDLMTKIDMERVEHTARTANADE--------------FVRTLPQGYNTHIG 322 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~--lf~~ti~eni~-~~~~~~~~~~~~~~~~~~~~~l~~--------------~~~~lp~g~~t~~~ 322 (426)
...-.+.|..|++. ++..++++... +.......+.+++.+.++.+++.. +.+..|.+. ..
T Consensus 74 ~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~---~~ 150 (247)
T cd03275 74 SAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGK---RF 150 (247)
T ss_pred eEEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcch---hh
Confidence 22233455555443 23344443321 111112345666777778877742 222222111 11
Q ss_pred CCCCCCChHHHHHHHHHHHhcCC----CCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHhcCEEEE
Q 014366 323 PRGSSLSGGQRQRLAIARALYQN----SSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMMAKRVFL 397 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal~~~----p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~D~i~v 397 (426)
....+||||||||++||||++.+ |+++||||||++||+.+...+.+.|+++.+ +.|+|+|||+.+.+..||++++
T Consensus 151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~ 230 (247)
T cd03275 151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVG 230 (247)
T ss_pred hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEE
Confidence 23478999999999999999864 899999999999999999999999999865 6899999999988889999999
Q ss_pred EeC
Q 014366 398 LDN 400 (426)
Q Consensus 398 l~~ 400 (426)
|..
T Consensus 231 ~~~ 233 (247)
T cd03275 231 VYR 233 (247)
T ss_pred EEe
Confidence 864
No 386
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.95 E-value=2.2e-27 Score=259.87 Aligned_cols=103 Identities=28% Similarity=0.445 Sum_probs=93.9
Q ss_pred Cccc-ccCCCCCCCChHHHHHHHHHHHhcCCC---CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH
Q 014366 316 GYNT-HIGPRGSSLSGGQRQRLAIARALYQNS---SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM 390 (426)
Q Consensus 316 g~~t-~~~~~g~~LSgGqkQRl~iARal~~~p---~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~ 390 (426)
|++. .+++...+||||||||++|||+|+++| +++||||||++||+.+...+.+.|+++. +++|||+|||+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 5654 468889999999999999999999999 9999999999999999999999999885 4789999999999999
Q ss_pred hcCEEEEE------eCCEEEEeccccccccCcch
Q 014366 391 MAKRVFLL------DNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 391 ~~D~i~vl------~~G~i~e~g~~~~l~~~~~~ 418 (426)
.||+|++| ++|++++.|+++++.+++.+
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s 931 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEAS 931 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCccc
Confidence 99999999 79999999999988876544
No 387
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=4.3e-26 Score=227.28 Aligned_cols=216 Identities=25% Similarity=0.404 Sum_probs=175.1
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC-CCCCHHHHhc-
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV-QNIRLDSLRR- 263 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i-~~~~~~~~r~- 263 (426)
.-++++|++..-..+ ...+++|||++++||++||.|-.|-|-+-|+.+|+|+.+|.+|+|.++|+++ ...+..++|+
T Consensus 256 ~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 256 VVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred eEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 458999999865433 4689999999999999999999999999999999999999999999999997 6667777654
Q ss_pred ceEEEecCCC---C-CcccHHHHHcCCCCCCC-------CCHHHHHHHHHHhchHHHHHhc---CCCcccccCCCCCCCC
Q 014366 264 HVGLVSQDIT---L-FSGTVAENIGYRDLMTK-------IDMERVEHTARTANADEFVRTL---PQGYNTHIGPRGSSLS 329 (426)
Q Consensus 264 ~i~~v~Q~~~---l-f~~ti~eni~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~l---p~g~~t~~~~~g~~LS 329 (426)
.++|||.|.+ + .+.|+.||+.+.....+ .+...+.+..+ +.++++ +.+- ..+..+||
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~fdVr~~~~----~~~a~~LS 405 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEEFDVRAPSP----DAPARSLS 405 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHHcCccCCCC----CcchhhcC
Confidence 5999999984 3 46799999976542211 12233332222 122221 2222 23467999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEec
Q 014366 330 GGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 330 gGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g 407 (426)
||++||+-+||-|.++|++||..+||-|||..+.+.|.+.|.+.+ +++.|++||-+++++. .||||.||.+|+++...
T Consensus 406 GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~ 485 (501)
T COG3845 406 GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIV 485 (501)
T ss_pred CcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccc
Confidence 999999999999999999999999999999999999999998875 5789999999998874 89999999999999888
Q ss_pred cccc
Q 014366 408 RSTL 411 (426)
Q Consensus 408 ~~~~ 411 (426)
++++
T Consensus 486 ~~~~ 489 (501)
T COG3845 486 PPEE 489 (501)
T ss_pred cccc
Confidence 7765
No 388
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=9.8e-27 Score=208.24 Aligned_cols=221 Identities=22% Similarity=0.302 Sum_probs=174.2
Q ss_pred EEEEeEEEEeC--CCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC----CccEEEEcCEeCCCCCHHHH
Q 014366 188 VKFCNISFKYA--DNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP----LSGCILVDDHDVQNIRLDSL 261 (426)
Q Consensus 188 i~~~~v~~~y~--~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p----~~G~I~~~g~~i~~~~~~~~ 261 (426)
+.++|++..+. .+...+++++|++++.||+-++||+||||||-+.|.|+|..+. +.-...+++.++-.+++++.
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 44566665553 3334689999999999999999999999999999999998763 45677889999989988887
Q ss_pred hc----ceEEEecCCC--CCc-cc----HHHHHcCC----CCC--CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCC
Q 014366 262 RR----HVGLVSQDIT--LFS-GT----VAENIGYR----DLM--TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPR 324 (426)
Q Consensus 262 r~----~i~~v~Q~~~--lf~-~t----i~eni~~~----~~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~ 324 (426)
|+ .|+++||+|. |-+ .+ +.+||-.. +.. -.....+..+.+.++|+.|--+- +...
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDI--------M~SY 155 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDI--------MRSY 155 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHH--------HHhC
Confidence 75 5789999996 322 23 34555321 110 12234556677888888654322 1223
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCC
Q 014366 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNG 401 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G 401 (426)
+.+|--||-|+|.||.|++.+|++||.||||+++|+.+..+|.+.|.++.+ +.|+++++||+..+. .||+|-||--|
T Consensus 156 P~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCG 235 (330)
T COG4170 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCG 235 (330)
T ss_pred cchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEec
Confidence 468999999999999999999999999999999999999999999988853 579999999999885 89999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
+-+|.++.+++.+.+
T Consensus 236 Q~~ESa~~e~l~~~P 250 (330)
T COG4170 236 QTVESAPSEELVTMP 250 (330)
T ss_pred ccccccchhHHhcCC
Confidence 999999988877654
No 389
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.3e-26 Score=229.12 Aligned_cols=196 Identities=23% Similarity=0.357 Sum_probs=165.2
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
++.+++.+|+|.|+.++.+.+.+++++++.-+.+++||+||+||||++|++.+-..|.+|.+.+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 356999999999987654689999999999999999999999999999999999999999887754 667
Q ss_pred eEEEecCCC-CCcc--cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 265 VGLVSQDIT-LFSG--TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 265 i~~v~Q~~~-lf~~--ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
|+|-+|... .++. +..|-.. ...++..++++++.+...|++..+...+ ...||||||=||++|..
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~--~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~ 496 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFME--KSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAAC 496 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHH--HhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHH
Confidence 999999654 2333 2333332 1223457889999999888876665432 36899999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEEE
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e 405 (426)
...+|.+|+|||||+.||.++-..+.++|+.+.. .||+|||+.+.+. .|+.+++.++|++..
T Consensus 497 ~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~G--GVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 497 TWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNG--GVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred hcCCCcEEEecCCCccccHHHHHHHHHHHHhcCC--cEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999999998754 6999999999997 699999999999964
No 390
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=2.3e-25 Score=243.63 Aligned_cols=97 Identities=28% Similarity=0.458 Sum_probs=88.6
Q ss_pred Cccc-ccCCCCCCCChHHHHHHHHHHHhcC---CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH
Q 014366 316 GYNT-HIGPRGSSLSGGQRQRLAIARALYQ---NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM 390 (426)
Q Consensus 316 g~~t-~~~~~g~~LSgGqkQRl~iARal~~---~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~ 390 (426)
|++. .++++..+|||||+||++|||+|++ +|+++||||||++||+.+...+.+.|+++. ++.|+|+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5654 4688899999999999999999997 599999999999999999999999999885 4789999999999998
Q ss_pred hcCEEEEE------eCCEEEEecccccc
Q 014366 391 MAKRVFLL------DNGKLEELNRSTLL 412 (426)
Q Consensus 391 ~~D~i~vl------~~G~i~e~g~~~~l 412 (426)
.||+|++| ++|++++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999 79999999988765
No 391
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.93 E-value=8e-26 Score=222.25 Aligned_cols=170 Identities=27% Similarity=0.467 Sum_probs=132.9
Q ss_pred cceeeeEE-----EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCC-CCcc
Q 014366 204 VLDQLNLH-----IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT-LFSG 277 (426)
Q Consensus 204 ~l~~isl~-----i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~~ 277 (426)
.+.+..|+ |..||+++++||||-||||++++|+|.++|++|+ ..+ -+++|=||--. -|++
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~g 416 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDG 416 (591)
T ss_pred ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCC
Confidence 34455555 4567899999999999999999999999999998 222 24888888543 3789
Q ss_pred cHHHHHcCCCCCCCCCHH-HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCC
Q 014366 278 TVAENIGYRDLMTKIDME-RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS 356 (426)
Q Consensus 278 ti~eni~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts 356 (426)
||++-+.-..+.. +... -..+.++-.++++.+ ..+..+|||||.||||||-||.+++++++||||++
T Consensus 417 tV~~~l~~~~~~~-~~~s~~~~ei~~pl~l~~i~-----------e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA 484 (591)
T COG1245 417 TVEDLLRSAIRSA-FGSSYFKTEIVKPLNLEDLL-----------ERPVDELSGGELQRVAIAAALSREADLYLLDEPSA 484 (591)
T ss_pred cHHHHHHHhhhhh-cccchhHHhhcCccchHHHH-----------hcccccCCchhHHHHHHHHHhccccCEEEecCchh
Confidence 9999885432211 1111 122344444444444 44678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEe
Q 014366 357 ALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLD 399 (426)
Q Consensus 357 ~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~ 399 (426)
.||.+.+-.+.+.|++.. .++|.++|-||+-.+. .+||++|++
T Consensus 485 ~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 485 YLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred hccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 999999999999999875 3589999999999998 599999996
No 392
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.93 E-value=4.2e-26 Score=228.49 Aligned_cols=222 Identities=22% Similarity=0.309 Sum_probs=145.3
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
...++++|++++|.+. .+++|+.|++.+|+.+||+|+|||||||++++|.|-..|..-++-+--.+ +++.+..+. -
T Consensus 73 s~dvk~~sls~s~~g~--~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls-~e~~ps~~~-a 148 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHGV--ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS-REIEPSEKQ-A 148 (614)
T ss_pred cccceeeeeeeccCCc--eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc-ccCCCchHH-H
Confidence 3469999999999764 69999999999999999999999999999999999988865544321111 111111111 1
Q ss_pred eEEEecCCCCCc---ccHHHHHcCCCCCCC-CCHHHHHHHHHHhchH-------HHHHhcCCCcc-cccCCCCCCCChHH
Q 014366 265 VGLVSQDITLFS---GTVAENIGYRDLMTK-IDMERVEHTARTANAD-------EFVRTLPQGYN-THIGPRGSSLSGGQ 332 (426)
Q Consensus 265 i~~v~Q~~~lf~---~ti~eni~~~~~~~~-~~~~~~~~~~~~~~l~-------~~~~~lp~g~~-t~~~~~g~~LSgGq 332 (426)
+-++.+...=-. .--.|++.-.....+ ...+.+.+.+...+.+ ..+..+ |.. +.......+|||||
T Consensus 149 v~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~gl--gf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 149 VQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGL--GFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhc--CCCHhHHHHHhhccCchH
Confidence 111111000000 001111111100000 0001111111111111 111111 322 34455678999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCE-EEEecccc
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGK-LEELNRST 410 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~-i~e~g~~~ 410 (426)
|.|++|||||+.+|++|+|||||++||.++...+.+.|.+.... ++++++|..+++. .|..|+.|++++ +...|+.+
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnyd 305 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYD 305 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCCHH
Confidence 99999999999999999999999999999999999999887433 8999999999996 799999999999 45677765
Q ss_pred ccc
Q 014366 411 LLG 413 (426)
Q Consensus 411 ~l~ 413 (426)
.+.
T Consensus 306 qy~ 308 (614)
T KOG0927|consen 306 QYV 308 (614)
T ss_pred HHh
Confidence 444
No 393
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.93 E-value=4.9e-26 Score=209.71 Aligned_cols=172 Identities=13% Similarity=0.168 Sum_probs=119.8
Q ss_pred ceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC-CHHHHhcceEEEecCCCCCcccHHHHH
Q 014366 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI-RLDSLRRHVGLVSQDITLFSGTVAENI 283 (426)
Q Consensus 205 l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~-~~~~~r~~i~~v~Q~~~lf~~ti~eni 283 (426)
++++++++.+| +.+|+||||||||||+..|.-.+..... ....|..+.++ ....-...+.+++|+..++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 46678888887 8899999999999999998744332221 11112211110 00011345888888776555 2
Q ss_pred cCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh----cCCCCEEEeeccCCCCC
Q 014366 284 GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL----YQNSSVLILDEATSALD 359 (426)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal----~~~p~illlDEpts~LD 359 (426)
.....+.+.+. ++++. .....++..+||+|||||++||||+ +.+|+++||||||++||
T Consensus 84 ----~~~~~~~~~~~---------~~l~~-----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD 145 (198)
T cd03276 84 ----PLCVLSQDMAR---------SFLTS-----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMD 145 (198)
T ss_pred ----cCCHHHHHHHH---------HHhcc-----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccC
Confidence 11111122222 23322 2223456789999999999999999 69999999999999999
Q ss_pred HHHHHHHHHHHHHHc-C---CceEEEeccChHHHHhcCEEEEEeCCE
Q 014366 360 SRSELLVRQAVDRLL-G---HHTVLVIAHHLETVMMAKRVFLLDNGK 402 (426)
Q Consensus 360 ~~~~~~i~~~l~~~~-~---~~tvi~itH~~~~~~~~D~i~vl~~G~ 402 (426)
+.+...+.+.|.+.. + ++|+|++||+++.+..+|+|-+|..++
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 146 MVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 999999999998863 2 258999999999998889999998754
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2.8e-25 Score=216.95 Aligned_cols=192 Identities=27% Similarity=0.427 Sum_probs=153.1
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
.-+-+.||+|.|++. ++.+++++|-|.--..+|||||||.|||||+++|.|-++|+.|+.+-+ -|-+|
T Consensus 585 PvLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~i 652 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRI 652 (807)
T ss_pred CeeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeee
Confidence 457889999999876 579999999999999999999999999999999999999999987532 24469
Q ss_pred EEEecCCC--CC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 266 GLVSQDIT--LF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 266 ~~v~Q~~~--lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
|+..|... |- ..|--|.+.-.. +.+.++.++.+-..++....... ....||||||-||++|-.-
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~F---Nlpyq~ARK~LG~fGL~sHAHTi----------kikdLSGGQKaRValaeLa 719 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKF---NLPYQEARKQLGTFGLASHAHTI----------KIKDLSGGQKARVALAELA 719 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhc---CCChHHHHHHhhhhhhhhccceE----------eeeecCCcchHHHHHHHHh
Confidence 99999764 32 347777774321 23456666777666664432221 3578999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH--hcCEEEEEeCCEEEE
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM--MAKRVFLLDNGKLEE 405 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~--~~D~i~vl~~G~i~e 405 (426)
++.|+||||||||++||.++...+.++|.+... .||||||+-..+. .| ..+|+++-.|-|
T Consensus 720 l~~PDvlILDEPTNNLDIESIDALaEAIney~G--gVi~VsHDeRLi~eT~C-~LwVvE~Q~i~e 781 (807)
T KOG0066|consen 720 LGGPDVLILDEPTNNLDIESIDALAEAINEYNG--GVIMVSHDERLIVETDC-NLWVVENQGIDE 781 (807)
T ss_pred cCCCCEEEecCCCCCcchhhHHHHHHHHHhccC--cEEEEecccceeeecCc-eEEEEccCChhh
Confidence 999999999999999999999999999998753 6999999999885 45 456666655544
No 395
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5e-25 Score=219.66 Aligned_cols=200 Identities=25% Similarity=0.334 Sum_probs=142.4
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
..+|..++++..|+++ .+|++-++++..|..+||||+||+|||||+++|+. |.|..-..+ .++|.-
T Consensus 78 ~~Di~~~~fdLa~G~k--~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~ 143 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGK--ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGD 143 (582)
T ss_pred ccceeeeeeeeeecch--hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheecc
Confidence 3579999999999864 59999999999999999999999999999999997 444332211 111111
Q ss_pred eEEEecCC-CCCcccHHHHHcCCCC-C-CCCCHHHHHH-HHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 265 VGLVSQDI-TLFSGTVAENIGYRDL-M-TKIDMERVEH-TARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 265 i~~v~Q~~-~lf~~ti~eni~~~~~-~-~~~~~~~~~~-~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
+++-.- .+-..+-+.-+..-.. . ...+.+++.. ++.-.+..+.....| ..+||||=|-|++|||
T Consensus 144 --~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p----------t~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 144 --DTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP----------TKSLSGGWRMRLALAR 211 (582)
T ss_pred --chHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc----------ccccCcchhhHHHHHH
Confidence 111111 1122222222211100 0 0112333433 566666666555555 4799999999999999
Q ss_pred HhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEE-Eecccccc
Q 014366 341 ALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLE-ELNRSTLL 412 (426)
Q Consensus 341 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~-e~g~~~~l 412 (426)
||..+||+|||||||+.||..+...+.+.|..+. .|+|+||||-.++. .|.-|+.+++-++- ..|+.+.+
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 9999999999999999999999999999998864 79999999999996 69999999887663 45665443
No 396
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.90 E-value=5e-23 Score=183.92 Aligned_cols=204 Identities=23% Similarity=0.262 Sum_probs=153.6
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC-CC------
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN-IR------ 257 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~-~~------ 257 (426)
...|++.++.|+|+... |++-|+|++++.|....+||.||||||||+|+|+|-.-.-.|.|.+.|.+--. -.
T Consensus 11 ~~aievsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred cceEEEeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 34699999999998764 79999999999999999999999999999999999887778999999976422 10
Q ss_pred ----HHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 258 ----LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 258 ----~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
-.+|++..++--.-|.--..++.+-| ++-. ..+.++-++..+.. |-.+.-+...+|-|||
T Consensus 90 l~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~--g~dp~Rre~LI~iL-------------DIdl~WRmHkvSDGqr 153 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVG--GDDPERREKLIDIL-------------DIDLRWRMHKVSDGQR 153 (291)
T ss_pred eeEecccccccccccccccccccccHHHHH-hhcc--CCChhHhhhhhhhe-------------eccceEEEeeccccch
Confidence 01233333332211111122454433 3221 11233333333322 2223345678999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEE
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEE 405 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e 405 (426)
+||.|+..|++.=++|+|||-|--||...+..+++.+++.. +++||+..||-.+-++ ...+++.|.+|+++.
T Consensus 154 RRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred hhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 99999999999999999999999999999999999998865 4689999999998775 799999999999986
No 397
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.90 E-value=4.8e-23 Score=186.59 Aligned_cols=85 Identities=25% Similarity=0.268 Sum_probs=75.6
Q ss_pred HHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc----CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEecc
Q 014366 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAH 384 (426)
Q Consensus 310 ~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~----~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH 384 (426)
+..+|+|-.|.+ ||||||||++|||+++ .+|+++++|||+++||+...+.+.+.+.++.+ +.|+|++||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 445677766665 9999999999999995 79999999999999999999999999998754 489999999
Q ss_pred ChHHHHhcCEEEEEeC
Q 014366 385 HLETVMMAKRVFLLDN 400 (426)
Q Consensus 385 ~~~~~~~~D~i~vl~~ 400 (426)
+++.+..+|+++.+..
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9998889999999975
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.89 E-value=4.9e-23 Score=190.18 Aligned_cols=146 Identities=18% Similarity=0.183 Sum_probs=109.0
Q ss_pred cceeeeEEEeCCC-EEEEECCCCCcHHHHHHHHh--------cCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCC
Q 014366 204 VLDQLNLHIRAGE-TVALIGPSGGGKSTLAKLLL--------RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL 274 (426)
Q Consensus 204 ~l~~isl~i~~Ge-~~~ivG~sGsGKSTLl~ll~--------g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~l 274 (426)
.+-++||++.+|+ +++|+||||||||||++.|. |.+-|....+ .++|+.|....
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~ 78 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFAD 78 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEe
Confidence 3557899999996 79999999999999999998 5554432111 13333333110
Q ss_pred CcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeecc
Q 014366 275 FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354 (426)
Q Consensus 275 f~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEp 354 (426)
++ ..+.+ .++..++|+||||+..+++++ .+|+++++|||
T Consensus 79 ----------lg-------------------~~~~l-----------~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp 117 (200)
T cd03280 79 ----------IG-------------------DEQSI-----------EQSLSTFSSHMKNIARILQHA-DPDSLVLLDEL 117 (200)
T ss_pred ----------cC-------------------chhhh-----------hcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCC
Confidence 00 00001 113368999999999999985 89999999999
Q ss_pred CCCCCHHHHHHHHH-HHHHHc-CCceEEEeccChHHHHhcCEEEEEeCCEEEEec
Q 014366 355 TSALDSRSELLVRQ-AVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDNGKLEELN 407 (426)
Q Consensus 355 ts~LD~~~~~~i~~-~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g 407 (426)
|+++|+.....+.. .++++. .+.|+|++||+.+....||++++|++|+++..+
T Consensus 118 ~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 118 GSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 99999999988864 566654 368999999997766789999999999997653
No 399
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=1.1e-22 Score=189.41 Aligned_cols=180 Identities=16% Similarity=0.187 Sum_probs=114.2
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-h-----cceEEEecCCCCCccc-
Q 014366 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-R-----RHVGLVSQDITLFSGT- 278 (426)
Q Consensus 206 ~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r-----~~i~~v~Q~~~lf~~t- 278 (426)
+++.+++.+| +.+|+||||||||||+..|.-..-...... ... ....++ + ..|-..++... ..
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~-----~~~~~~i~~g~~~~~v~~~~~~~~---~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRA-----KKVGEFVKRGCDEGTIEIELYGNP---GNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccc-----cCHHHHhhCCCCcEEEEEEEEeCC---Ccc
Confidence 5566666665 789999999999999998875542211100 000 011111 1 11222221110 01
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH----hcCCCCEEEeecc
Q 014366 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA----LYQNSSVLILDEA 354 (426)
Q Consensus 279 i~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa----l~~~p~illlDEp 354 (426)
..+|+.+. .+.+.+.+....... +.+..+|.+.+. -..++.+||||||||+.+|++ ++.+|+++|+|||
T Consensus 85 ~~~n~~~~-----~~q~~~~~~~~~~~~-e~l~~~~~~~~~-~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP 157 (213)
T cd03277 85 QVDNLCQF-----LPQDRVGEFAKLSPI-ELLVKFREGEQL-QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEI 157 (213)
T ss_pred ccCCceEE-----EchHHHHHHHhCChH-hHheeeecCCCc-cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecc
Confidence 22333321 123444444444333 555566655442 355778999999999887755 4689999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcC--C-ceEEEeccChHHH-HhcC--EEEEEeCCE
Q 014366 355 TSALDSRSELLVRQAVDRLLG--H-HTVLVIAHHLETV-MMAK--RVFLLDNGK 402 (426)
Q Consensus 355 ts~LD~~~~~~i~~~l~~~~~--~-~tvi~itH~~~~~-~~~D--~i~vl~~G~ 402 (426)
|++||+.++..+.+.+.+..+ + .|+|++||++... ..|| +|++|++|+
T Consensus 158 ~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 158 NQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred cccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 999999999999999988753 3 4799999998655 4555 888898886
No 400
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1e-21 Score=190.30 Aligned_cols=76 Identities=28% Similarity=0.375 Sum_probs=70.1
Q ss_pred CCChHHHHHHHHHHHhcC----CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCE
Q 014366 327 SLSGGQRQRLAIARALYQ----NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGK 402 (426)
Q Consensus 327 ~LSgGqkQRl~iARal~~----~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~ 402 (426)
.|||||+||+++|++++. +|+++++||||++||+.+...+.+.++++.++.|+|++||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 599999999999997653 9999999999999999999999999998877789999999999878999999999874
No 401
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=3.3e-22 Score=218.28 Aligned_cols=202 Identities=25% Similarity=0.322 Sum_probs=165.2
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC---CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc-c
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP---LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-G 277 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p---~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 277 (426)
..+|+|+|.-++||+.+.+.||.|||||||++.++|-.+- ..|+|.+||.+.++... ++.++|++|+...|+ .
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 3699999999999999999999999999999999997753 35699999999988755 778999999887775 5
Q ss_pred cHHHHHcCCCCCC-------CCCHHHH-----HHHHHHhchHHHHHhcCCCcccccCCC-CCCCChHHHHHHHHHHHhcC
Q 014366 278 TVAENIGYRDLMT-------KIDMERV-----EHTARTANADEFVRTLPQGYNTHIGPR-GSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 278 ti~eni~~~~~~~-------~~~~~~~-----~~~~~~~~l~~~~~~lp~g~~t~~~~~-g~~LSgGqkQRl~iARal~~ 344 (426)
||+|-+.|..+.. +.++.+. +..++..|+ ....||.+|.+ ....|||||+||++|-+++.
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL-------~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~ 277 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGL-------DHCADTLVGNDMVRGVSGGERKRVSIGEMLVG 277 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCc-------hhhccceecccccccccCcccceeeeeeeeec
Confidence 9999998753321 1122221 123333333 33578999865 56899999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChH--HHHhcCEEEEEeCCEEEEeccccccc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLE--TVMMAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~--~~~~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+|+++.+||+|.|||..|.-++.+.|+++.+ +.|.++.-|+++ .....|.|++|.+|+++.+|+.++..
T Consensus 278 ~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 278 PASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred CcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 9999999999999999999999999999853 678888888874 45689999999999999999876543
No 402
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.87 E-value=1.6e-22 Score=199.04 Aligned_cols=189 Identities=31% Similarity=0.413 Sum_probs=131.4
Q ss_pred eEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEE-----------EcCEeCCCCCHHH
Q 014366 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCIL-----------VDDHDVQNIRLDS 260 (426)
Q Consensus 192 ~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~-----------~~g~~i~~~~~~~ 260 (426)
++..+|+.+. ..|..+- ..++|+++||+||||-||||-+|+|+|.+.|.=|+-. +.|..+.++ .+.
T Consensus 79 e~vHRYg~Ng-FkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~Y-F~~ 155 (591)
T COG1245 79 EVVHRYGVNG-FKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNY-FKK 155 (591)
T ss_pred cceeeccCCc-eEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHH-HHH
Confidence 4567787542 1222221 2468999999999999999999999999999877631 111111110 000
Q ss_pred Hh-------cceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 261 LR-------RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 261 ~r-------~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
+. .++-||.--|..+.|+|.|-+.-.. +.-..++.++++ +++..+++...+|||||-
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~d--------------e~g~~devve~l--~L~nvl~r~v~~LSGGEL 219 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVD--------------ERGKFDEVVERL--GLENVLDRDVSELSGGEL 219 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhhh--------------hcCcHHHHHHHh--cchhhhhhhhhhcCchHH
Confidence 11 1122332234445666666653211 111223333333 444455557889999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEe
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLD 399 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~ 399 (426)
||+|||-|++++++++++|||||-||...+-...+.++++.+ +++||+|.||+..+. .+|-|.++-
T Consensus 220 Qr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 220 QRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 999999999999999999999999999999999999999976 699999999999998 589988874
No 403
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.87 E-value=2e-21 Score=189.41 Aligned_cols=197 Identities=29% Similarity=0.444 Sum_probs=152.4
Q ss_pred CCccEEEEeEEEEeCCC------------------------CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC-
Q 014366 184 INGDVKFCNISFKYADN------------------------MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL- 238 (426)
Q Consensus 184 ~~~~i~~~~v~~~y~~~------------------------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~- 238 (426)
..+.+.++++++.|.+. ...+++|+||+|++|+.++|+|+|||||||++++|+|.
T Consensus 354 L~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 354 LEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred cCCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHh
Confidence 34567888888776321 23589999999999999999999999999999999984
Q ss_pred -------CCCCccEEEEcCEeCCCCCHHHHhcceEEEecC--CCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHH
Q 014366 239 -------YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQD--ITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEF 309 (426)
Q Consensus 239 -------~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~--~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (426)
|+|++|.|.+--..++ +.+|-+ |.+=..|+.|.+.-- ..|.....+.+..+++.+-
T Consensus 434 ~~~~ee~y~p~sg~v~vp~nt~~-----------a~iPge~Ep~f~~~tilehl~s~----tGD~~~AveILnraGlsDA 498 (593)
T COG2401 434 KGRGEEKYRPDSGKVEVPKNTVS-----------ALIPGEYEPEFGEVTILEHLRSK----TGDLNAAVEILNRAGLSDA 498 (593)
T ss_pred hcccccccCCCCCceeccccchh-----------hccCcccccccCchhHHHHHhhc----cCchhHHHHHHHhhccchh
Confidence 6799999987432221 344443 332234888887421 1233345667888888765
Q ss_pred HHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChH
Q 014366 310 VRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLE 387 (426)
Q Consensus 310 ~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~ 387 (426)
+-- -.....||.|||.|..||+++...|.+++.||..|.||+.|..++.+.+.++. .+.|++++|||++
T Consensus 499 vly---------Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE 569 (593)
T COG2401 499 VLY---------RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE 569 (593)
T ss_pred hhh---------hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 421 12457999999999999999999999999999999999999999999999986 4789999999999
Q ss_pred HHH--hcCEEEEEeCCEEE
Q 014366 388 TVM--MAKRVFLLDNGKLE 404 (426)
Q Consensus 388 ~~~--~~D~i~vl~~G~i~ 404 (426)
... .-|+++.+.=|+..
T Consensus 570 v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 570 VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHhccCCceeEEeeccccc
Confidence 986 37999988777654
No 404
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.85 E-value=4.9e-21 Score=170.93 Aligned_cols=136 Identities=25% Similarity=0.328 Sum_probs=101.0
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE-EEecCCCCCcccHHHHHcCC
Q 014366 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG-LVSQDITLFSGTVAENIGYR 286 (426)
Q Consensus 208 isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~ti~eni~~~ 286 (426)
.++.+.++.++.|+|||||||||+++.+....-..+|.+.... +. +.+ .+++...-|
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~----------- 71 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL----------- 71 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE-----------
Confidence 3445556679999999999999999998766655555544310 00 011 111111101
Q ss_pred CCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC----CCCEEEeeccCCCCCHHH
Q 014366 287 DLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ----NSSVLILDEATSALDSRS 362 (426)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~----~p~illlDEpts~LD~~~ 362 (426)
+.. -.+||+||+||+++||++.. +|+++|+|||++++|+..
T Consensus 72 -----------------------i~~------------~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~ 116 (162)
T cd03227 72 -----------------------IFT------------RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRD 116 (162)
T ss_pred -----------------------ehh------------eeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHH
Confidence 000 01399999999999999986 789999999999999999
Q ss_pred HHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEeC
Q 014366 363 ELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 363 ~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
...+.+.+.+.. ++.++|++||+++....+|+++.|+.
T Consensus 117 ~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 117 GQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 999999998764 35799999999999999999999964
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.84 E-value=1.1e-20 Score=215.87 Aligned_cols=106 Identities=25% Similarity=0.344 Sum_probs=94.9
Q ss_pred Cccc-ccCCCCCCCChHHHHHHHHHHHhcCC---CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH
Q 014366 316 GYNT-HIGPRGSSLSGGQRQRLAIARALYQN---SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM 390 (426)
Q Consensus 316 g~~t-~~~~~g~~LSgGqkQRl~iARal~~~---p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~ 390 (426)
|+.. .+|++..+|||||.|||-||.-|.++ +.++||||||.||++...+.+++.|+++. .+.|||+|.|+++.++
T Consensus 1687 GLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~ 1766 (1809)
T PRK00635 1687 GLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLK 1766 (1809)
T ss_pred CCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 4442 47999999999999999999999876 78999999999999999999999999985 5799999999999999
Q ss_pred hcCEEEEEe------CCEEEEeccccccccCcchhhh
Q 014366 391 MAKRVFLLD------NGKLEELNRSTLLGSNHDSLVS 421 (426)
Q Consensus 391 ~~D~i~vl~------~G~i~e~g~~~~l~~~~~~l~~ 421 (426)
.||.|+-|. .|+|+..|+|+++.+++++...
T Consensus 1767 ~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~t~ 1803 (1809)
T PRK00635 1767 QADYLIEMGPGSGKTGGKILFSGPPKDISASKDSLLK 1803 (1809)
T ss_pred hCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCcHH
Confidence 999999995 4799999999999988766543
No 406
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.84 E-value=5.6e-21 Score=179.06 Aligned_cols=152 Identities=21% Similarity=0.209 Sum_probs=111.9
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE-EEecCCCCCcccHH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG-LVSQDITLFSGTVA 280 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~ti~ 280 (426)
..+.+|+++++++|++++|.||||+||||+++.+.- ..+..++| |||.+...++ +.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~~ 73 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--IV 73 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--cc
Confidence 358999999999999999999999999999999981 12233455 6766543211 22
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh--cCCCCEEEeecc---C
Q 014366 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL--YQNSSVLILDEA---T 355 (426)
Q Consensus 281 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal--~~~p~illlDEp---t 355 (426)
+.+ +...++.+.. ...+|.|++|+..+++++ +.+|+++||||| |
T Consensus 74 ~~i-----------------l~~~~l~d~~--------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT 122 (222)
T cd03285 74 DCI-----------------LARVGASDSQ--------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGT 122 (222)
T ss_pred cee-----------------Eeeeccccch--------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCC
Confidence 221 1111221111 257999999999999999 999999999999 9
Q ss_pred CCCCHHHHHHHH-HHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEecc
Q 014366 356 SALDSRSELLVR-QAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 356 s~LD~~~~~~i~-~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~ 408 (426)
+++|+....... +.+.+ ..+.++|++||..+....||++..+++|++...++
T Consensus 123 ~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 123 STYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred ChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 999998775433 44443 23689999999766667899999999999976654
No 407
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.83 E-value=3e-20 Score=194.14 Aligned_cols=103 Identities=28% Similarity=0.444 Sum_probs=93.4
Q ss_pred Cccc-ccCCCCCCCChHHHHHHHHHHHhcCCC---CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH
Q 014366 316 GYNT-HIGPRGSSLSGGQRQRLAIARALYQNS---SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM 390 (426)
Q Consensus 316 g~~t-~~~~~g~~LSgGqkQRl~iARal~~~p---~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~ 390 (426)
|+.. .+|....+|||||.|||-||.-|.++. -++||||||.||-.+..+++++.|.++. ++.|||+|-|+++.++
T Consensus 810 GLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk 889 (935)
T COG0178 810 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK 889 (935)
T ss_pred CcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEe
Confidence 5553 579999999999999999999999987 8999999999999999999999999985 5799999999999999
Q ss_pred hcCEEEEE------eCCEEEEeccccccccCcch
Q 014366 391 MAKRVFLL------DNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 391 ~~D~i~vl------~~G~i~e~g~~~~l~~~~~~ 418 (426)
.||.|+-| +.|+|+.+|+|+++.+.+.+
T Consensus 890 ~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S 923 (935)
T COG0178 890 TADWIIDLGPEGGDGGGEIVASGTPEEVAKVKAS 923 (935)
T ss_pred ecCEEEEcCCCCCCCCceEEEecCHHHHHhCccc
Confidence 99999998 35899999999999876543
No 408
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.82 E-value=2.3e-20 Score=172.08 Aligned_cols=143 Identities=15% Similarity=0.146 Sum_probs=98.0
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc-ccHHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVAE 281 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~e 281 (426)
++++|++++. |++++|+||||||||||+|+|+|... +...|.++... .+++|...+|. .|+.|
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccchh
Confidence 5778776664 79999999999999999999987543 22355554321 36677555664 59999
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHH
Q 014366 282 NIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361 (426)
Q Consensus 282 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~ 361 (426)
|+.++... ...+.. .+.+.++.+. ..+|+++|+||||+++|+.
T Consensus 79 ~l~~~~s~---~~~e~~------~~~~iL~~~~----------------------------~~~p~llllDEp~~glD~~ 121 (199)
T cd03283 79 DLRDGISY---FYAELR------RLKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred ccccccCh---HHHHHH------HHHHHHHhcc----------------------------CCCCeEEEEecccCCCCHH
Confidence 99775421 111111 2333343321 1799999999999999999
Q ss_pred HHHHHHH-HHHHHc-CCceEEEeccChHHHHh---cCEEEEE
Q 014366 362 SELLVRQ-AVDRLL-GHHTVLVIAHHLETVMM---AKRVFLL 398 (426)
Q Consensus 362 ~~~~i~~-~l~~~~-~~~tvi~itH~~~~~~~---~D~i~vl 398 (426)
....+.. .++++. .+.|+|++||+++.+.. .++|-.+
T Consensus 122 ~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 122 ERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 8877654 566553 46799999999988753 4455443
No 409
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=3.1e-19 Score=172.41 Aligned_cols=76 Identities=26% Similarity=0.369 Sum_probs=63.0
Q ss_pred CCCCChHHHHHHHHHHHhc---------CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHH-Hhc--
Q 014366 325 GSSLSGGQRQRLAIARALY---------QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETV-MMA-- 392 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~---------~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~-~~~-- 392 (426)
...+|+||||++++||+|+ .+|+++|+||||++||+...+.+.+.+.+.. .+++++|+.+.+ ..|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~~~~~~~~~~ 257 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDLADFDALWLR 257 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCchhccchhcc
Confidence 3458999999999999984 7999999999999999999999999997753 355566555554 456
Q ss_pred -CEEEEEeCCEE
Q 014366 393 -KRVFLLDNGKL 403 (426)
Q Consensus 393 -D~i~vl~~G~i 403 (426)
++++.+++|++
T Consensus 258 ~~~i~~l~~g~i 269 (270)
T cd03242 258 RAQIFRVDAGTL 269 (270)
T ss_pred CccEEEEeCcEE
Confidence 78999999986
No 410
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.81 E-value=3e-20 Score=171.80 Aligned_cols=154 Identities=21% Similarity=0.261 Sum_probs=104.3
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC-CCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcC
Q 014366 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRL-YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY 285 (426)
Q Consensus 207 ~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~-~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~ 285 (426)
..++++.+|++++|+||||||||||+++|++. +.+..|.... ..+..+++..|....| +..+++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~~--~~~d~i-- 85 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTRI--GAEDSI-- 85 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEEe--cCcccc--
Confidence 44666779999999999999999999999943 3233332110 0012233332211111 111111
Q ss_pred CCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHH
Q 014366 286 RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365 (426)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~ 365 (426)
.+..+.+|++++| +..+.+++.+|+++|+||||+++|+.....
T Consensus 86 ------------------------------------~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~ 128 (202)
T cd03243 86 ------------------------------------SDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLA 128 (202)
T ss_pred ------------------------------------cCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHH
Confidence 1122456666665 666678889999999999999999998877
Q ss_pred HHHH-HHHHc-CCceEEEeccChHHHHhcCEEEEEeCCEEEEecccccc
Q 014366 366 VRQA-VDRLL-GHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 366 i~~~-l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l 412 (426)
+... ++.+. .+.++|++||+.+.+..||++..+++|++.+.++...+
T Consensus 129 l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 129 IAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 7554 45443 36799999999999999999999999999888765433
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.79 E-value=3.1e-19 Score=195.76 Aligned_cols=100 Identities=25% Similarity=0.354 Sum_probs=90.8
Q ss_pred Ccccc-cCCCCCCCChHHHHHHHHHHHhcCCC--CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHh
Q 014366 316 GYNTH-IGPRGSSLSGGQRQRLAIARALYQNS--SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMM 391 (426)
Q Consensus 316 g~~t~-~~~~g~~LSgGqkQRl~iARal~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~ 391 (426)
|++.. +++...+|||||+||++|||||..+| +++||||||+|||+.+...+.+.|+++. +++|||+|+|+++.+..
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 56544 67888999999999999999999986 8999999999999999999999999985 47899999999999999
Q ss_pred cCEEEEE------eCCEEEEeccccccccC
Q 014366 392 AKRVFLL------DNGKLEELNRSTLLGSN 415 (426)
Q Consensus 392 ~D~i~vl------~~G~i~e~g~~~~l~~~ 415 (426)
||+|++| ++|+|++.|+++++..+
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred CCEEEEecccccCCCCEEeeccCHHHHhcC
Confidence 9999999 89999999998877543
No 412
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.78 E-value=2e-19 Score=197.59 Aligned_cols=105 Identities=21% Similarity=0.355 Sum_probs=93.8
Q ss_pred HHHhcCCCcccc-cCCCCCCCChHHHHHHHHHHHhcCCC--CEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEecc
Q 014366 309 FVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIARALYQNS--SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAH 384 (426)
Q Consensus 309 ~~~~lp~g~~t~-~~~~g~~LSgGqkQRl~iARal~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH 384 (426)
+++.+ |++.. ++....+|||||+|||+|||||..+| +++||||||++||+...+.+.+.|+++.+ +.|||+|+|
T Consensus 472 ~L~~v--GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH 549 (943)
T PRK00349 472 FLVDV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEH 549 (943)
T ss_pred Hhhcc--ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 34444 67654 68889999999999999999999997 99999999999999999999999999864 789999999
Q ss_pred ChHHHHhcCEEEEE------eCCEEEEeccccccccC
Q 014366 385 HLETVMMAKRVFLL------DNGKLEELNRSTLLGSN 415 (426)
Q Consensus 385 ~~~~~~~~D~i~vl------~~G~i~e~g~~~~l~~~ 415 (426)
+++.+..||+|++| ++|+++..|+++++.++
T Consensus 550 ~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 550 DEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred CHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 99999899999999 99999999998877554
No 413
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.77 E-value=5.6e-19 Score=167.67 Aligned_cols=183 Identities=20% Similarity=0.291 Sum_probs=123.9
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc--EEEEcCEeCCCCCHHHHhcce--EEEecCCCCCcccHHHHHcC
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG--CILVDDHDVQNIRLDSLRRHV--GLVSQDITLFSGTVAENIGY 285 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G--~I~~~g~~i~~~~~~~~r~~i--~~v~Q~~~lf~~ti~eni~~ 285 (426)
+.+.+||+++|+||+|+|||||++.+.+......+ .+.+....-+..+..++.+.+ .+|-.... .+....+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~---~~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFD---EPPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCC---CCHHHHHHH
Confidence 57899999999999999999999999998876533 323221111123444444433 11111100 011111100
Q ss_pred CCCCCCCCHHHHHHHHHHhc-----hHHHHHhcCCCcccccCCCCCCCChHH--------HHHHHHHHHhcCCCCEEEee
Q 014366 286 RDLMTKIDMERVEHTARTAN-----ADEFVRTLPQGYNTHIGPRGSSLSGGQ--------RQRLAIARALYQNSSVLILD 352 (426)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~-----l~~~~~~lp~g~~t~~~~~g~~LSgGq--------kQRl~iARal~~~p~illlD 352 (426)
.. . -.+..+.. ...+ +-|.+.+++.++++..++.|..+|||+ +||+++||+++++++|.+|
T Consensus 88 ~~---~-~~~~a~~~-~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l- 161 (249)
T cd01128 88 AE---M-VLEKAKRL-VEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII- 161 (249)
T ss_pred HH---H-HHHHHHHH-HHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-
Confidence 00 0 00001110 1111 234578889999999999999999999 9999999999999999999
Q ss_pred ccCCCCCHHHHHH-HHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEeCCEEE
Q 014366 353 EATSALDSRSELL-VRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDNGKLE 404 (426)
Q Consensus 353 Epts~LD~~~~~~-i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~G~i~ 404 (426)
||+.+|+.++.. ++ +.+++ .++|.|++||++....++|.|.||+.|++.
T Consensus 162 -~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~ 212 (249)
T cd01128 162 -ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRK 212 (249)
T ss_pred -eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCcc
Confidence 999999766543 43 44444 467999999999999999999999999973
No 414
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.75 E-value=1.3e-17 Score=163.49 Aligned_cols=181 Identities=23% Similarity=0.420 Sum_probs=136.5
Q ss_pred EEeCCCCCCcceeeeEEEeCCC-----EEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEe
Q 014366 195 FKYADNMPLVLDQLNLHIRAGE-----TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269 (426)
Q Consensus 195 ~~y~~~~~~~l~~isl~i~~Ge-----~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~ 269 (426)
++|++- +..+.+..|.|+.|+ ++..+|+||.||||++++++|..+|++|. ++..+ .++|=|
T Consensus 343 y~Yp~m-~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSykp 408 (592)
T KOG0063|consen 343 YSYPKM-KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYKP 408 (592)
T ss_pred eccCcc-eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceeccc
Confidence 456643 457889999999985 68899999999999999999999999873 22222 377888
Q ss_pred cCCCC-CcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCE
Q 014366 270 QDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSV 348 (426)
Q Consensus 270 Q~~~l-f~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~i 348 (426)
|...- +.+|||.-+.---+....+.+-+.+.++-..+++.+ +....+|||||.||+|+|-+|=+.+++
T Consensus 409 qkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~-----------dqevq~lSggelQRval~KOGGKpAdv 477 (592)
T KOG0063|consen 409 QKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENII-----------DQEVQGLSGGELQRVALALCLGKPADV 477 (592)
T ss_pred cccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHH-----------hHHhhcCCchhhHHHHHHHhcCCCCce
Confidence 86553 678888866210001112233344455544444444 345689999999999999999999999
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHH--cCCceEEEeccChHHHH-hcCEEEEEeC
Q 014366 349 LILDEATSALDSRSELLVRQAVDRL--LGHHTVLVIAHHLETVM-MAKRVFLLDN 400 (426)
Q Consensus 349 lllDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~~~~~~-~~D~i~vl~~ 400 (426)
++.|||.+-||.+.+..--+.+++. ..++|-.+|.|+.-... .|||++|.+.
T Consensus 478 YliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 478 YLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred EEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 9999999999999988887888775 35689999999988776 5999999864
No 415
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.74 E-value=1.5e-17 Score=159.62 Aligned_cols=142 Identities=18% Similarity=0.190 Sum_probs=104.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC-HHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCH
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR-LDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM 294 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~-~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~ 294 (426)
..++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..++...++++||....-..++.||- + .
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~----~-----k 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC----P-----K 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc----h-----H
Confidence 678999999999999999999999999999999999997654 45677778899996532233565542 0 0
Q ss_pred HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 014366 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374 (426)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 374 (426)
.+ | ...++|+ .+|+++++|||++ .+.+...++.+.
T Consensus 183 ~~----------------------------------~---~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~ 217 (270)
T TIGR02858 183 AE----------------------------------G---MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALH 217 (270)
T ss_pred HH----------------------------------H---HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHh
Confidence 00 1 1344455 4999999999974 333444455555
Q ss_pred CCceEEEeccChHH--H------------HhcCEEEEEeCCEEEEeccccccc
Q 014366 375 GHHTVLVIAHHLET--V------------MMAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 375 ~~~tvi~itH~~~~--~------------~~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
.+.|+|++||+.+. + ..+||+++|++|+ ..|+++++.
T Consensus 218 ~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 218 AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 68899999997655 3 2479999999887 667666554
No 416
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=8.7e-19 Score=171.80 Aligned_cols=204 Identities=26% Similarity=0.422 Sum_probs=136.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc--CCCCCccEEEEcCEeCCCCCHHHH---
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR--LYDPLSGCILVDDHDVQNIRLDSL--- 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g--~~~p~~G~I~~~g~~i~~~~~~~~--- 261 (426)
+|.++|.+.+-.+ +..+.+.||.|-.|..+++|||||-|||||++-|+- +--|..=.+++..+.+..-+...+
T Consensus 264 DIKiEnF~ISA~G--k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tv 341 (807)
T KOG0066|consen 264 DIKIENFDISAQG--KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTV 341 (807)
T ss_pred cceeeeeeeeccc--ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHH
Confidence 5888888877654 358999999999999999999999999999999874 333443445555554432111100
Q ss_pred ----hcceEEEecCCCC----Ccc--cHHHHHc--------CCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCC
Q 014366 262 ----RRHVGLVSQDITL----FSG--TVAENIG--------YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323 (426)
Q Consensus 262 ----r~~i~~v~Q~~~l----f~~--ti~eni~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~ 323 (426)
.++..++-.+..| -.| |+.|-+. .|. ...+.+.++. +..| |++..+.+
T Consensus 342 l~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA---~sAEarARRI---------LAGL--GFskEMQ~ 407 (807)
T KOG0066|consen 342 LKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGA---DSAEARARRI---------LAGL--GFSKEMQE 407 (807)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcc---ccchhHHHHH---------Hhhc--CCChhHhc
Confidence 0111111111111 011 2222220 010 0011122222 2222 45544443
Q ss_pred C-CCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCC
Q 014366 324 R-GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNG 401 (426)
Q Consensus 324 ~-g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G 401 (426)
+ ...+|||-|-||+|||||...|-+|.|||||+.||......+-..|.-+ .+|.++|||+..++. .|..|+.|++-
T Consensus 408 rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~q 485 (807)
T KOG0066|consen 408 RPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQ 485 (807)
T ss_pred CCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhh
Confidence 3 4689999999999999999999999999999999999988888888777 469999999999997 69999999998
Q ss_pred EEEE-ecc
Q 014366 402 KLEE-LNR 408 (426)
Q Consensus 402 ~i~e-~g~ 408 (426)
++.. .|+
T Consensus 486 kLhyYrGN 493 (807)
T KOG0066|consen 486 KLHYYRGN 493 (807)
T ss_pred hhhhhcch
Confidence 8753 444
No 417
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.73 E-value=2e-17 Score=153.00 Aligned_cols=138 Identities=16% Similarity=0.221 Sum_probs=97.2
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE-EEecCCCCCcccHH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG-LVSQDITLFSGTVA 280 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~ti~ 280 (426)
..+.+|+++++++|++++|+||||+||||++++++++. +..++| +||-.. ...++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 36899999999999999999999999999999998874 222333 222211 123666
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCH
Q 014366 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (426)
Q Consensus 281 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~ 360 (426)
|+|...-.. +..+.++.+++|+|++|+ ..+-+++.+|+++|||||++|+|+
T Consensus 73 d~I~~~~~~----------------------------~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 73 NRLLSRLSN----------------------------DDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred hheeEecCC----------------------------ccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCH
Confidence 776432110 001122346889999976 455667899999999999999999
Q ss_pred HHHHHHH-HHHHHHc-CCceEEEeccChHHHHh
Q 014366 361 RSELLVR-QAVDRLL-GHHTVLVIAHHLETVMM 391 (426)
Q Consensus 361 ~~~~~i~-~~l~~~~-~~~tvi~itH~~~~~~~ 391 (426)
.....+. ..++.+. .+.++|++||+.+.+..
T Consensus 124 ~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 124 ADGFAISLAILECLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 7655443 3444443 36899999999998864
No 418
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.71 E-value=1.3e-17 Score=137.03 Aligned_cols=76 Identities=24% Similarity=0.138 Sum_probs=70.4
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~en 282 (426)
++|++++|++++||+++|+||||||||||++++. +|++.++|.|+..++..+.++.++++||+ +|++||+||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 5899999999999999999999999999999986 89999999999988888888888899888 899999999
Q ss_pred HcCC
Q 014366 283 IGYR 286 (426)
Q Consensus 283 i~~~ 286 (426)
|.+.
T Consensus 75 i~~~ 78 (107)
T cd00820 75 IFLI 78 (107)
T ss_pred ceee
Confidence 9873
No 419
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.71 E-value=3.9e-17 Score=152.51 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=102.5
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc-ccHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVA 280 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~ 280 (426)
.+.+|++++.++ ++++|+|||||||||++|++++..-. ..|. .+ + ..+..++++.| +|+ .++.
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~------~v---p--~~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGS------FV---P--ASKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCC------ee---c--cccceecceee---EeccCCch
Confidence 588999999887 99999999999999999999875421 1121 11 1 11345676654 343 3666
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh--cCCCCEEEeecc---C
Q 014366 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL--YQNSSVLILDEA---T 355 (426)
Q Consensus 281 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal--~~~p~illlDEp---t 355 (426)
||+..+. |.=...+..+++++ +.+|+++||||| |
T Consensus 84 ~~ls~g~-----------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 84 DDLAGGR-----------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hhhccCc-----------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 6664431 11111222333333 579999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccc
Q 014366 356 SALDSRSE-LLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 356 s~LD~~~~-~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+++|.... ..+.+.+.+. .+.|+|++||+.+....+|++..+++|++...+..+++.
T Consensus 123 ~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 123 STYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred ChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 99998652 4445555432 267999999998777788888778889887666555443
No 420
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.65 E-value=3.6e-16 Score=146.26 Aligned_cols=73 Identities=29% Similarity=0.419 Sum_probs=59.3
Q ss_pred CCChHHHHHHHHHHHh----cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEe
Q 014366 327 SLSGGQRQRLAIARAL----YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 327 ~LSgGqkQRl~iARal----~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~ 399 (426)
.||||||-+++||--| ..++|++|||||.++||......+.+.|++..++.-+|++||+......||+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999998544 467899999999999999999999999999887788999999999999999887653
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=99.65 E-value=1.7e-15 Score=152.10 Aligned_cols=76 Identities=25% Similarity=0.419 Sum_probs=66.2
Q ss_pred CCCChHHHHHHHHHHHhc---------CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-h--cC
Q 014366 326 SSLSGGQRQRLAIARALY---------QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-M--AK 393 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~---------~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~--~D 393 (426)
..+|.||+|++++|++++ .+|+|+|||||+++||+..++.+.+.+.++ +..++++||+.+.+. . .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 578999999999999885 799999999999999999999999988754 357899999987664 3 46
Q ss_pred EEEEEeCCEE
Q 014366 394 RVFLLDNGKL 403 (426)
Q Consensus 394 ~i~vl~~G~i 403 (426)
+++.+++|++
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 422
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=1.4e-15 Score=175.28 Aligned_cols=119 Identities=24% Similarity=0.369 Sum_probs=101.8
Q ss_pred CCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH------HHHHHHHhcCCCC
Q 014366 274 LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ------RLAIARALYQNSS 347 (426)
Q Consensus 274 lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ------Rl~iARal~~~p~ 347 (426)
.|+||++|||.+ .+ +.+++ ..+++.++..+|+..+|.| +|.++.++ .||||||| |++||||++.+|+
T Consensus 1153 ~~~~~~~~~i~~-~~--~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~ 1225 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RS--DADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCG 1225 (1311)
T ss_pred HcCccHHHHhhc-CC--CCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCC
Confidence 489999999999 44 33333 5788889999999999999 99998775 89999999 9999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHc------CCceEEEeccChHHHH------hcCEEEEEe
Q 014366 348 VLILDEATSALDSRSELLVRQAVDRLL------GHHTVLVIAHHLETVM------MAKRVFLLD 399 (426)
Q Consensus 348 illlDEpts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~~~~~~------~~D~i~vl~ 399 (426)
+|+|||||++||+.+...+.+.|.++. .+.|+|+|||++..+. .||+.|-+.
T Consensus 1226 il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1226 IIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLK 1289 (1311)
T ss_pred EEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeee
Confidence 999999999999999999998887762 2579999999998875 257777554
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.60 E-value=1e-14 Score=135.90 Aligned_cols=134 Identities=21% Similarity=0.255 Sum_probs=90.3
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc--CCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc--ccH
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR--LYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS--GTV 279 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g--~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~--~ti 279 (426)
+-+|++++=..+.+++|+||||+|||||+|.+.. .. +..|...... ...++|..|...-+. .|+
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccCh
Confidence 4455554322237999999999999999999983 33 5667655421 124677777543221 122
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCC
Q 014366 280 AENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359 (426)
Q Consensus 280 ~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD 359 (426)
.+++ ..| .-+-||+++|++++.+|+++|||||++|+|
T Consensus 86 ~~~~-----------------------S~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd 122 (213)
T cd03281 86 SSGQ-----------------------SAF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTD 122 (213)
T ss_pred hhcc-----------------------chH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCC
Confidence 2221 011 234599999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHcC----CceEEEeccChHHHHhc
Q 014366 360 SRSELL-VRQAVDRLLG----HHTVLVIAHHLETVMMA 392 (426)
Q Consensus 360 ~~~~~~-i~~~l~~~~~----~~tvi~itH~~~~~~~~ 392 (426)
+..... ....++++.+ +.++|++||+.+.+...
T Consensus 123 ~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 123 TEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 975444 4456666532 24899999999988643
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.59 E-value=4.5e-15 Score=161.33 Aligned_cols=152 Identities=21% Similarity=0.223 Sum_probs=99.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCC-CEEEEECCCCCcHHHHHHHHhcC-CCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAG-ETVALIGPSGGGKSTLAKLLLRL-YDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G-e~~~ivG~sGsGKSTLl~ll~g~-~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
.+.++++..-+-... -.-.+|+++.++ ++++|+||||+|||||+|+++|. +.+..|.
T Consensus 295 ~i~l~~~rhPll~~~--~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~------------------- 353 (771)
T TIGR01069 295 KIILENARHPLLKEP--KVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI------------------- 353 (771)
T ss_pred CEEEccccCceecCC--ceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC-------------------
Confidence 477776654221110 122378888887 89999999999999999999987 3344331
Q ss_pred eEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 265 i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
+||..... ...+.+++.. ..+++ +.+. ++.+++|+|++|+..+++++ .
T Consensus 354 --~Vpa~~~~-~~~~~d~i~~-----~i~~~------------~si~-----------~~LStfS~~m~~~~~il~~~-~ 401 (771)
T TIGR01069 354 --PIPANEHS-EIPYFEEIFA-----DIGDE------------QSIE-----------QNLSTFSGHMKNISAILSKT-T 401 (771)
T ss_pred --CccCCccc-cccchhheee-----ecChH------------hHHh-----------hhhhHHHHHHHHHHHHHHhc-C
Confidence 33333210 0012222210 01110 0011 12368999999999999987 7
Q ss_pred CCCEEEeeccCCCCCHHHHHHHH-HHHHHHc-CCceEEEeccChHHHHh
Q 014366 345 NSSVLILDEATSALDSRSELLVR-QAVDRLL-GHHTVLVIAHHLETVMM 391 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~-~~l~~~~-~~~tvi~itH~~~~~~~ 391 (426)
+|+++|+|||++|+|+.....+. ..+..+. .+.++|++||..+....
T Consensus 402 ~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 402 ENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKAL 450 (771)
T ss_pred CCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 89999999999999999988884 4555554 46899999999876543
No 425
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.57 E-value=2.8e-15 Score=136.70 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=55.4
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHH-HHHHHHc--CCceEEEeccChHHHHhcCEEEEEeC
Q 014366 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR-QAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 324 ~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+.+++|+|++|...+.+. +.+|+++|+|||++++|+.....+. ..++.+. .+.++|++||+.+..+.||+---+++
T Consensus 58 ~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~ 136 (185)
T smart00534 58 GLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRN 136 (185)
T ss_pred cccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceE
Confidence 346788888874433332 3499999999999999999777765 4455553 26799999999987777775333344
Q ss_pred CEE
Q 014366 401 GKL 403 (426)
Q Consensus 401 G~i 403 (426)
++.
T Consensus 137 ~~~ 139 (185)
T smart00534 137 LHM 139 (185)
T ss_pred EEE
Confidence 433
No 426
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.56 E-value=3.6e-15 Score=158.50 Aligned_cols=91 Identities=30% Similarity=0.474 Sum_probs=80.2
Q ss_pred hcCCCcccccCCCC------CCCChHHHHHHHHHHHhc----------CCCCEEEeeccC-CCCCHHHHHHHHHHHHHHc
Q 014366 312 TLPQGYNTHIGPRG------SSLSGGQRQRLAIARALY----------QNSSVLILDEAT-SALDSRSELLVRQAVDRLL 374 (426)
Q Consensus 312 ~lp~g~~t~~~~~g------~~LSgGqkQRl~iARal~----------~~p~illlDEpt-s~LD~~~~~~i~~~l~~~~ 374 (426)
.+|+++++.+++.| .+||||||||++||||++ .+|+++|||||| ++||+.+...+.+.|.++
T Consensus 447 ~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~- 525 (562)
T PHA02562 447 TLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL- 525 (562)
T ss_pred EechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-
Confidence 45777777777666 789999999999999987 599999999998 789999999999999988
Q ss_pred CCceEEEeccChHHHHhcCEEEEEeC-CEE
Q 014366 375 GHHTVLVIAHHLETVMMAKRVFLLDN-GKL 403 (426)
Q Consensus 375 ~~~tvi~itH~~~~~~~~D~i~vl~~-G~i 403 (426)
++.|+|+|||++.....||++++|++ |+.
T Consensus 526 ~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 526 KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 67899999999888888999999986 544
No 427
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.53 E-value=1.8e-13 Score=139.64 Aligned_cols=175 Identities=19% Similarity=0.239 Sum_probs=117.3
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC---CC-----CCHHHHhcceEEEecCCCC
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV---QN-----IRLDSLRRHVGLVSQDITL 274 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i---~~-----~~~~~~r~~i~~v~Q~~~l 274 (426)
.+++++ |++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.|+.- .+ ++...+++.+.++.+...
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~- 224 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ- 224 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC-
Confidence 589999 99999999999999999999999999999999999999965543 32 233456777888865321
Q ss_pred CcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCC-hHHHHH-HHHHHHhcCCCCEEEee
Q 014366 275 FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS-GGQRQR-LAIARALYQNSSVLILD 352 (426)
Q Consensus 275 f~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LS-gGqkQR-l~iARal~~~p~illlD 352 (426)
+. ..+...+.-.+.+.|+.... |.|-.+=- .+++ --|.|| +++ .+.+|+
T Consensus 225 ---~~--------------~~r~~~~~~a~~iAEyfr~~--g~~Vll~~--Dsltr~A~A~rEisl---~~ge~P----- 275 (438)
T PRK07721 225 ---PA--------------LMRIKGAYTATAIAEYFRDQ--GLNVMLMM--DSVTRVAMAQREIGL---AVGEPP----- 275 (438)
T ss_pred ---CH--------------HHHHHHHHHHHHHHHHHHHC--CCcEEEEE--eChHHHHHHHHHHHH---hcCCCC-----
Confidence 00 11111111112223333221 33321110 0111 011111 111 134555
Q ss_pred ccCCCCCHHHHHHHHHHHHHHc---CCc-----eEEEeccChHHHHhcCEEEEEeCCEEEEecccc
Q 014366 353 EATSALDSRSELLVRQAVDRLL---GHH-----TVLVIAHHLETVMMAKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 353 Epts~LD~~~~~~i~~~l~~~~---~~~-----tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~ 410 (426)
.|+|+|+.....+.+.++++. ++. ||++.+|+++. ..||++.++.+|+|+..++..
T Consensus 276 -~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la 339 (438)
T PRK07721 276 -TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLA 339 (438)
T ss_pred -ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHH
Confidence 689999999999999998875 354 99999999985 789999999999999887653
No 428
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.52 E-value=9.5e-15 Score=143.46 Aligned_cols=170 Identities=28% Similarity=0.378 Sum_probs=118.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----CHHHHhc--------------ceEEEecCCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLDSLRR--------------HVGLVSQDITL 274 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~----~~~~~r~--------------~i~~v~Q~~~l 274 (426)
++|+..++||.||-||||-++.++|-.+|.-|.-. ++-+..++ .-.++.. +.-||.|-|..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 58999999999999999999999999999877632 12111110 1111111 11122222222
Q ss_pred CcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeecc
Q 014366 275 FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354 (426)
Q Consensus 275 f~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEp 354 (426)
..+++.+++.--. +.+...++++..++...++ +...+||||+-||.+||.+.+.+++++++|||
T Consensus 177 ~k~~v~~~l~~~~-----~r~~~~~~~~~~~L~~~~~-----------re~~~lsggelqrfaia~~~vq~advyMFDEp 240 (592)
T KOG0063|consen 177 VKGTVGSLLDRKD-----ERDNKEEVCDQLDLNNLLD-----------REVEQLSGGELQRFAIAMVCVQKADVYMFDEP 240 (592)
T ss_pred HHHHHHHHHHHHh-----hcccHHHHHHHHHHhhHHH-----------hhhhhcccchhhhhhhhhhhhhhcceeEecCC
Confidence 3345555542111 1122334444444444433 35679999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEe
Q 014366 355 TSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLD 399 (426)
Q Consensus 355 ts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~ 399 (426)
.|.||...+.+-...|+.+. .++-||+|-||++.+. ..|-|.++-
T Consensus 241 SsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 241 SSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred cccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 99999999999888998875 4688999999999997 588888875
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.49 E-value=6.2e-14 Score=148.71 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=72.0
Q ss_pred CCCChHHHHHHHHHHHhcCC----CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 326 SSLSGGQRQRLAIARALYQN----SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~~~----p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
..|||||+||++|||+++.. |+++||||||+|||+.+...+.+.|+++.+++|||+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 47899999999999999885 69999999999999999999999999987789999999999988899999999987
Q ss_pred E
Q 014366 402 K 402 (426)
Q Consensus 402 ~ 402 (426)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 5
No 430
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.48 E-value=2.2e-12 Score=121.55 Aligned_cols=140 Identities=29% Similarity=0.403 Sum_probs=121.0
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++++++||.++++.+++.|+..++..++.++.++..++..+..++..+.+.|.++|+++||+||.|+.+.++|++..++.
T Consensus 134 ~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~ 213 (275)
T PF00664_consen 134 ILLFFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKY 213 (275)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLL-VSGGSFDGCSLVSFITSLVFMIEPI 142 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l-v~~g~l~~g~l~~~~~~~~~~~~p~ 142 (426)
.+...+............... ....++++++|+++ +..|.+++|.++++..+...+.+|+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 214 RKASFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 777766666555544444433 33356677789999 9999999999999999999998885
No 431
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.47 E-value=7.3e-14 Score=130.19 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccC-----CCCCHHHHHHHHHHHHHHc
Q 014366 331 GQRQRLAIARALYQNSSVLILDEAT-----SALDSRSELLVRQAVDRLL 374 (426)
Q Consensus 331 GqkQRl~iARal~~~p~illlDEpt-----s~LD~~~~~~i~~~l~~~~ 374 (426)
-|++++.|||+++.+|+++++|||| ++||+.+.+.+.+.++++.
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999998874
No 432
>PRK10869 recombination and repair protein; Provisional
Probab=99.46 E-value=2.1e-13 Score=143.87 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=71.0
Q ss_pred CCChHHHHHHHHHHHhcC----CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCE
Q 014366 327 SLSGGQRQRLAIARALYQ----NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGK 402 (426)
Q Consensus 327 ~LSgGqkQRl~iARal~~----~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~ 402 (426)
.+||||+||++|||+++. +|+++|||||++|||..+...+.+.|+++.++.+||+|||++..+..||+.++++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 579999999999999997 5899999999999999999999999999877789999999999888999999998754
No 433
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.43 E-value=9e-13 Score=143.84 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=61.8
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHH-HHHHc-CCceEEEeccChHHHHh-cCEEEEEeCC
Q 014366 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA-VDRLL-GHHTVLVIAHHLETVMM-AKRVFLLDNG 401 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~-l~~~~-~~~tvi~itH~~~~~~~-~D~i~vl~~G 401 (426)
.+++|+|++|++.|++++ .+|+++|+|||++|+|+.....+... +..+. .+.++|++||+.+.... +|+..++ ++
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~-~~ 465 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVE-NA 465 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeE-EE
Confidence 368999999999999999 89999999999999999988877654 54443 46799999999888764 5554443 45
Q ss_pred EEE
Q 014366 402 KLE 404 (426)
Q Consensus 402 ~i~ 404 (426)
.+.
T Consensus 466 ~~~ 468 (782)
T PRK00409 466 SVE 468 (782)
T ss_pred EEE
Confidence 543
No 434
>PRK14079 recF recombination protein F; Provisional
Probab=99.43 E-value=9.4e-13 Score=131.63 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=62.5
Q ss_pred CCCChHHHHHHHHHHHhc---------CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEE
Q 014366 326 SSLSGGQRQRLAIARALY---------QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVF 396 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~---------~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~ 396 (426)
.-+|+||++++++|+.|+ .+|++++||||+|.||......+.+.|.... .++|..|+ .-..||+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t~---~~~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGTE---APPGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcCC---CCCCCceEE
Confidence 457999999999999998 8999999999999999999999998886532 34444443 334789999
Q ss_pred EEeCCEEEEec
Q 014366 397 LLDNGKLEELN 407 (426)
Q Consensus 397 vl~~G~i~e~g 407 (426)
.+++|++.-..
T Consensus 337 ~~~~~~~~~~~ 347 (349)
T PRK14079 337 RIEAGVFTPEA 347 (349)
T ss_pred EEeccEecCCC
Confidence 99999876443
No 435
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.42 E-value=5.6e-13 Score=124.68 Aligned_cols=137 Identities=15% Similarity=0.201 Sum_probs=86.3
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc-CCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc-ccH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR-LYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GTV 279 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g-~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti 279 (426)
+.+.+|+++++++|++++|+||||+||||+++++++ .+.++.|...... . -.+++..| +|. ...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~----------~~~~~~~~---i~~~~~~ 83 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S----------ATLSIFDS---VLTRMGA 83 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c----------eEEeccce---EEEEecC
Confidence 358999999999999999999999999999999999 6778888765432 1 12333332 111 112
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCC
Q 014366 280 AENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359 (426)
Q Consensus 280 ~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD 359 (426)
.|++.-+.. .+ ..|-+|++-.-.-+.+|+++|||||.+|.|
T Consensus 84 ~d~~~~~~S--------------------------------------tF-~~e~~~~~~il~~~~~~sLvllDE~~~gT~ 124 (222)
T cd03287 84 SDSIQHGMS--------------------------------------TF-MVELSETSHILSNCTSRSLVILDELGRGTS 124 (222)
T ss_pred ccccccccc--------------------------------------hH-HHHHHHHHHHHHhCCCCeEEEEccCCCCCC
Confidence 222211100 00 011122222222346899999999988887
Q ss_pred HHHHHHH-HHHHHHHc--CCceEEEeccChHHHHh
Q 014366 360 SRSELLV-RQAVDRLL--GHHTVLVIAHHLETVMM 391 (426)
Q Consensus 360 ~~~~~~i-~~~l~~~~--~~~tvi~itH~~~~~~~ 391 (426)
+.....+ ...++.+. .+.++|++||+.+....
T Consensus 125 ~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 125 THDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred hhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 6655443 33444443 36799999999987654
No 436
>PRK13695 putative NTPase; Provisional
Probab=99.36 E-value=9.4e-13 Score=118.76 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=64.6
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEEEeec--cCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 324 RGSSLSGGQRQRLAIARALYQNSSVLILDE--ATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 324 ~g~~LSgGqkQRl~iARal~~~p~illlDE--pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
....+||+++-+..+++..+.+|+++++|| |+..+|....+.+.+.+ ..++++|+++|+-.....+|+|..+.+|
T Consensus 75 ~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 75 YVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPGG 151 (174)
T ss_pred EEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCCc
Confidence 345699999999999999999999999999 55566655554454444 2368999999996555689999999999
Q ss_pred EEEEe
Q 014366 402 KLEEL 406 (426)
Q Consensus 402 ~i~e~ 406 (426)
++.+.
T Consensus 152 ~i~~~ 156 (174)
T PRK13695 152 RVYEL 156 (174)
T ss_pred EEEEE
Confidence 99876
No 437
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.36 E-value=3e-12 Score=134.82 Aligned_cols=105 Identities=25% Similarity=0.397 Sum_probs=92.1
Q ss_pred Cccc-ccCCCCCCCChHHHHHHHHHHHhcCC--CCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHh
Q 014366 316 GYNT-HIGPRGSSLSGGQRQRLAIARALYQN--SSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMM 391 (426)
Q Consensus 316 g~~t-~~~~~g~~LSgGqkQRl~iARal~~~--p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~ 391 (426)
|++. -+++...+|||||.||+-||.-+-.+ -=+++||||+.||-+..-.++.+.|++++. |+|+|+|.||.+++..
T Consensus 469 GL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~ 548 (935)
T COG0178 469 GLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRA 548 (935)
T ss_pred CcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhh
Confidence 4543 24677889999999999999999776 358899999999999999999999999874 7999999999999999
Q ss_pred cCEEEEE------eCCEEEEeccccccccCcchhh
Q 014366 392 AKRVFLL------DNGKLEELNRSTLLGSNHDSLV 420 (426)
Q Consensus 392 ~D~i~vl------~~G~i~e~g~~~~l~~~~~~l~ 420 (426)
||+|+-| +.|+|+.+|+|++++++++++.
T Consensus 549 AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~SlT 583 (935)
T COG0178 549 ADHIIDIGPGAGEHGGEIVAEGTPEELLANPESLT 583 (935)
T ss_pred cCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcchh
Confidence 9999988 4689999999999998887654
No 438
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.33 E-value=3.4e-12 Score=144.65 Aligned_cols=79 Identities=23% Similarity=0.270 Sum_probs=72.0
Q ss_pred CCCCCCChHHHHHHHHHHHhcC----------CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-
Q 014366 323 PRGSSLSGGQRQRLAIARALYQ----------NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM- 390 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal~~----------~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~- 390 (426)
....+|||||++|++||+||+. +|++||+||||++||+.+...+.+.|.++. .+++|++|||+++...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~ 1025 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRER 1025 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHh
Confidence 4578999999999999999985 799999999999999999999999999885 4689999999999886
Q ss_pred hcCEEEEEeCC
Q 014366 391 MAKRVFLLDNG 401 (426)
Q Consensus 391 ~~D~i~vl~~G 401 (426)
.||+|.|++.|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 79999999765
No 439
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.33 E-value=1.3e-11 Score=116.31 Aligned_cols=157 Identities=15% Similarity=0.184 Sum_probs=91.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHH-HHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTL-AKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTL-l~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
+.++++.+.+++ .+++|+++.|.|++||||||| ++++.++.++....+++.... ++.++
T Consensus 8 ~~~~~ld~~l~g-----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~----~~~~~----- 67 (230)
T PRK08533 8 LSRDELHKRLGG-----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL----TTTEF----- 67 (230)
T ss_pred EEEeeeehhhCC-----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC----CHHHH-----
Confidence 556666666643 278999999999999999999 699998876544444443211 11111
Q ss_pred EEecCCCCCcccHHHHH-cCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc--
Q 014366 267 LVSQDITLFSGTVAENI-GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY-- 343 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~-- 343 (426)
.++. .++. +.++ +... ..+. .+.-. ..+|+++.++-.+++.+-
T Consensus 68 -------------~~~~~~~g~-----~~~~------------~~~~--~~l~-~~~~~-~~~~~~~~~~~~l~~il~~~ 113 (230)
T PRK08533 68 -------------IKQMMSLGY-----DINK------------KLIS--GKLL-YIPVY-PLLSGNSEKRKFLKKLMNTR 113 (230)
T ss_pred -------------HHHHHHhCC-----chHH------------Hhhc--CcEE-EEEec-ccccChHHHHHHHHHHHHHH
Confidence 1111 1110 1110 0000 0000 00000 135666555545444333
Q ss_pred --CCCCEEEeeccCCCC----CHHHHHHHHHHHHHHcC-CceEEEeccChHHH--------H-hcCEEEEEe
Q 014366 344 --QNSSVLILDEATSAL----DSRSELLVRQAVDRLLG-HHTVLVIAHHLETV--------M-MAKRVFLLD 399 (426)
Q Consensus 344 --~~p~illlDEpts~L----D~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~--------~-~~D~i~vl~ 399 (426)
.+|+++++||||+.+ |+...+.+.+.++++.+ +.|+ ++||+.... . .||-|+.|+
T Consensus 114 ~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tv-i~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 114 RFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVI-ILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEE-EEEecccccccccceeEEEeeeEEEEEE
Confidence 369999999999999 77777888888887754 5555 556664432 2 368888887
No 440
>PRK01156 chromosome segregation protein; Provisional
Probab=99.28 E-value=9.7e-12 Score=139.21 Aligned_cols=76 Identities=29% Similarity=0.433 Sum_probs=67.5
Q ss_pred CCCCCChHHHHHHHH------HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHH-cC--C-ceEEEeccChHHHHhcC
Q 014366 324 RGSSLSGGQRQRLAI------ARALYQNSSVLILDEATSALDSRSELLVRQAVDRL-LG--H-HTVLVIAHHLETVMMAK 393 (426)
Q Consensus 324 ~g~~LSgGqkQRl~i------ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~~--~-~tvi~itH~~~~~~~~D 393 (426)
++..|||||+||++| ||+++.+|++++|||||++||+.....+.+.+... .. + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 577899999999975 59999999999999999999999999999988753 22 2 48999999999888999
Q ss_pred EEEEEe
Q 014366 394 RVFLLD 399 (426)
Q Consensus 394 ~i~vl~ 399 (426)
+++.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999998
No 441
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.28 E-value=4.6e-12 Score=124.67 Aligned_cols=143 Identities=16% Similarity=0.135 Sum_probs=98.3
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCC
Q 014366 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRD 287 (426)
Q Consensus 208 isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~ 287 (426)
+++.+++|+.++|+||+|||||||+++|+++++|+.|.+.+++ ..++.... +..+.++.+... + +
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~-~~~~~l~~~~~~-------~----~- 201 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPH-PNYVHLFYSKGG-------Q----G- 201 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCC-CCEEEEEecCCC-------C----C-
Confidence 4577889999999999999999999999999999999888753 23322211 112222221100 0 0
Q ss_pred CCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHH
Q 014366 288 LMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR 367 (426)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~ 367 (426)
. ...+ ..-.++++|-.+|+++++|||.+ .++.
T Consensus 202 -~------------------------------------~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~ 233 (308)
T TIGR02788 202 -L------------------------------------AKVT----PKDLLQSCLRMRPDRIILGELRG-------DEAF 233 (308)
T ss_pred -c------------------------------------CccC----HHHHHHHHhcCCCCeEEEeccCC-------HHHH
Confidence 0 0011 11145567788999999999996 2345
Q ss_pred HHHHHHcCC-ceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccc
Q 014366 368 QAVDRLLGH-HTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 368 ~~l~~~~~~-~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+.++....+ .+++.++|..+.....||+..|..|++...|.+.+..
T Consensus 234 ~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 234 DFIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 556655444 4679999999977789999999999988888776554
No 442
>PRK03918 chromosome segregation protein; Provisional
Probab=99.28 E-value=9.2e-12 Score=139.21 Aligned_cols=77 Identities=32% Similarity=0.367 Sum_probs=68.1
Q ss_pred CCCCCChHHHH------HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHhcCEEE
Q 014366 324 RGSSLSGGQRQ------RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMMAKRVF 396 (426)
Q Consensus 324 ~g~~LSgGqkQ------Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~D~i~ 396 (426)
++..|||||+| |+||||+++.+|+++||||||++||+.+...+.+.|..+.. +.|+|+|||+.+....||+++
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~ 864 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVI 864 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEE
Confidence 45689999999 56667789999999999999999999999999999988643 579999999998878899999
Q ss_pred EEeC
Q 014366 397 LLDN 400 (426)
Q Consensus 397 vl~~ 400 (426)
+|+.
T Consensus 865 ~l~~ 868 (880)
T PRK03918 865 RVSL 868 (880)
T ss_pred EEEe
Confidence 9983
No 443
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.24 E-value=3.5e-11 Score=109.20 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=63.3
Q ss_pred cccCCCCCCCChHHHH------HHHHHHHhcCCCCEEEeeccCCCCC---HHHHHHHHHHHHHHc-CCceEEEeccChHH
Q 014366 319 THIGPRGSSLSGGQRQ------RLAIARALYQNSSVLILDEATSALD---SRSELLVRQAVDRLL-GHHTVLVIAHHLET 388 (426)
Q Consensus 319 t~~~~~g~~LSgGqkQ------Rl~iARal~~~p~illlDEpts~LD---~~~~~~i~~~l~~~~-~~~tvi~itH~~~~ 388 (426)
...+.....+|+|++| +...+.+...+|+++++|||++.+| ......+.+.++.++ .+.|+|+++|....
T Consensus 63 ~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 63 AIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred EEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccC
Confidence 3445566789999998 4444555667999999999999999 777777888877764 46899999998764
Q ss_pred ---------HH-hcCEEEEEe
Q 014366 389 ---------VM-MAKRVFLLD 399 (426)
Q Consensus 389 ---------~~-~~D~i~vl~ 399 (426)
+. .||.|+.|+
T Consensus 143 ~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 143 EGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred CCcccCcCceeEeeeEEEEEE
Confidence 43 599999997
No 444
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.24 E-value=4.8e-11 Score=131.55 Aligned_cols=68 Identities=22% Similarity=0.210 Sum_probs=58.5
Q ss_pred hcCCCCEEEeeccCCCC-CHHHHHHHHHHHHHHc-CCceEEEeccChHHH----------HhcCEEEEEeCCEEEEeccc
Q 014366 342 LYQNSSVLILDEATSAL-DSRSELLVRQAVDRLL-GHHTVLVIAHHLETV----------MMAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 342 l~~~p~illlDEpts~L-D~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~----------~~~D~i~vl~~G~i~e~g~~ 409 (426)
+..+|+++++|||+.+| |+...+.+.+.+++.+ .+.+++++||+++.+ ..||++++|.+|++.+.|..
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 35799999999999999 6899999999998875 467999999999876 36999999999998766543
No 445
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.22 E-value=1.7e-11 Score=140.61 Aligned_cols=77 Identities=23% Similarity=0.309 Sum_probs=69.5
Q ss_pred CCCCCCChHHHHHHHHHHHh----cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEE
Q 014366 323 PRGSSLSGGQRQRLAIARAL----YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLL 398 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal----~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl 398 (426)
..+..||||||||++|||++ +++|+++||||||++||+.+...+.+.|..+.++.++|+|||++..+..||+++.+
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 45678999999999999998 47789999999999999999999999999887668999999999988899999765
Q ss_pred e
Q 014366 399 D 399 (426)
Q Consensus 399 ~ 399 (426)
.
T Consensus 1165 ~ 1165 (1179)
T TIGR02168 1165 T 1165 (1179)
T ss_pred e
Confidence 3
No 446
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.22 E-value=5.6e-12 Score=127.76 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=56.3
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc-EEEEcCEeCCCCCHHHHhcceEEEecCC
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-CILVDDHDVQNIRLDSLRRHVGLVSQDI 272 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G-~I~~~g~~i~~~~~~~~r~~i~~v~Q~~ 272 (426)
.+|++||+++++||+++|+||||||||||++ .|+.+|++| +|.++|+++...+..++.. .-+|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~-LR~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMET-LDEIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHH-HHHHHHhh
Confidence 5899999999999999999999999999999 788888888 7999999998766544322 11888864
No 447
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.21 E-value=6.7e-11 Score=110.40 Aligned_cols=137 Identities=20% Similarity=0.202 Sum_probs=84.6
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ccEEEEcCEeCCCCCHHHHhcceEEEecCCCCC-cccH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTV 279 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~-~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ti 279 (426)
..+-+|++|+.++|++++|.||||+||||+++.+....-.. -|. .+. .+ +..++++ ..+| ....
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~vp---a~--~~~i~~~---~~i~~~~~~ 82 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DVP---AK--SMRLSLV---DRIFTRIGA 82 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------ccC---cc--ccEeccc---cEEEEecCc
Confidence 35889999999999999999999999999999987653211 121 000 00 0112211 1122 1133
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCC
Q 014366 280 AENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALD 359 (426)
Q Consensus 280 ~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD 359 (426)
.|++..+.. . +. .|-+|++-.-....+|+++|+|||++|+|
T Consensus 83 ~d~~~~~~S--t------------------------------------F~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~ 123 (218)
T cd03286 83 RDDIMKGES--T------------------------------------FM-VELSETANILRHATPDSLVILDELGRGTS 123 (218)
T ss_pred ccccccCcc--h------------------------------------HH-HHHHHHHHHHHhCCCCeEEEEecccCCCC
Confidence 344322210 0 00 11122222222236799999999999999
Q ss_pred HHHHHHHHHH-HHHHcC--CceEEEeccChHHHHh
Q 014366 360 SRSELLVRQA-VDRLLG--HHTVLVIAHHLETVMM 391 (426)
Q Consensus 360 ~~~~~~i~~~-l~~~~~--~~tvi~itH~~~~~~~ 391 (426)
+.....+... ++.+.+ +.++|++||+.+....
T Consensus 124 ~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 124 THDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred chHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 9988777777 555543 6899999999988753
No 448
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.19 E-value=1.1e-10 Score=118.59 Aligned_cols=168 Identities=20% Similarity=0.178 Sum_probs=117.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++-+.++..|..+ ..+++++ |++.+|++++|+|+||+|||||+++|+|..+|+.|.|.+.|+.-.
T Consensus 130 ~~~r~~i~~~l~TG-iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~------------ 195 (432)
T PRK06793 130 AFEREEITDVFETG-IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR------------ 195 (432)
T ss_pred chheechhhccCCC-CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc------------
Confidence 46667777777654 3578875 999999999999999999999999999999999988877664321
Q ss_pred EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc---
Q 014366 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY--- 343 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~--- 343 (426)
+++|.+.. .+...++. .+.+=....+-|.|+|+|++.+.+.+
T Consensus 196 -----------ev~e~~~~--------------~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 196 -----------EVKDFIRK--------------ELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred -----------cHHHHHHH--------------Hhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 23333210 00000000 00011123678999999999999887
Q ss_pred ----CCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEeCCEEEEecc
Q 014366 344 ----QNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 344 ----~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~ 408 (426)
.++-++++|+||...|+. +++...+.+.. .+.+..+.||-...++.|-+ .++|.|...++
T Consensus 241 fr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 789999999999999997 55555555554 46788888885555555544 47888865543
No 449
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.18 E-value=3.5e-11 Score=112.79 Aligned_cols=64 Identities=23% Similarity=0.341 Sum_probs=53.3
Q ss_pred CCCChHHHHHHHHHHHhcCCC---CEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHH
Q 014366 326 SSLSGGQRQRLAIARALYQNS---SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETV 389 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~~~p---~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~ 389 (426)
..+|.|+||.+.++-++...+ .++++|||-++|+|...+.+.+.|.+..+ +.-+|++||.+..+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 456999999999998888776 89999999999999999999999988765 67899999998764
No 450
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.17 E-value=9.7e-12 Score=133.68 Aligned_cols=197 Identities=15% Similarity=0.141 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHH-----HHHHHHHHHH
Q 014366 11 VLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARF-----RRLAHSDLCE 85 (426)
Q Consensus 11 ~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~-----~~~~~~~~~~ 85 (426)
.++++++++++++++......+..++.........+...+.+.|.+.++.+||..+.+......| .....+..+.
T Consensus 5 ~L~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~ 84 (644)
T PRK10733 5 LILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTK 84 (644)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHc
Confidence 34455555555544443333333344444445555677888899999999999998877655445 2222222222
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 86 LLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGC---SLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~l~~g---~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
..+..........+.. +.....++++++|++++..+.++.| .+++|..+...+..| ..+...+.++.....+.+|
T Consensus 85 ~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~ 163 (644)
T PRK10733 85 NVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEE 163 (644)
T ss_pred CCeEEecCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHH
Confidence 2222111111111111 2223356667789999999999888 778887777777777 6667778888877888888
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+.++.+...+. . . | +.+...+++| +.|+||+|+||||+.+.+++...
T Consensus 164 l~~i~~~~~~~---~---~----------------~--------~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 164 VAELVEYLREP---S---R----------------F--------QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred HHHHHHHhhCH---H---H----------------H--------HhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 88876542210 0 0 0 0111245566 99999999999999999988553
No 451
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.13 E-value=9.9e-11 Score=134.42 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=69.4
Q ss_pred CCCCChHHHHHHHHHHHhc----CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 325 GSSLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~----~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
...||||||++++||++++ .+||+++||||+++||+.....+.+.|.++..+.++|+|||+...+..||+++.+..
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 4589999999999999997 478999999999999999999999999988767789999999998889999987753
No 452
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.13 E-value=4.1e-10 Score=98.99 Aligned_cols=129 Identities=19% Similarity=0.164 Sum_probs=78.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHH
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER 296 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~ 296 (426)
++.|.||||+||||+++.+++...+..|.+.+.+.+... ...+ ++...... .
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~~~------------------~~~~~~~~--~----- 52 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EELT------------------ERLIGESL--K----- 52 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HHHH------------------HHHhhhhh--c-----
Confidence 378999999999999999999887766666554432111 1111 11000000 0
Q ss_pred HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCC----------CHHHHHHH
Q 014366 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL----------DSRSELLV 366 (426)
Q Consensus 297 ~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~L----------D~~~~~~i 366 (426)
. .+.. ...+.......+.++.++++.+++...+|+++++||+++-+ |....+.+
T Consensus 53 --------~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l 116 (165)
T cd01120 53 --------G-------ALDN-LIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEEL 116 (165)
T ss_pred --------c-------cccc-EEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHH
Confidence 0 0000 00111112233455666888999999999999999999544 44445566
Q ss_pred HHHHHHHcC-CceEEEeccChHHH
Q 014366 367 RQAVDRLLG-HHTVLVIAHHLETV 389 (426)
Q Consensus 367 ~~~l~~~~~-~~tvi~itH~~~~~ 389 (426)
.+.....++ +.|+|+++|.....
T Consensus 117 ~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 117 RELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHHHhcCCceEEEEEecCCcc
Confidence 666555543 68999999987543
No 453
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.13 E-value=3e-10 Score=101.09 Aligned_cols=81 Identities=16% Similarity=0.291 Sum_probs=66.4
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHh-cCEEEEEeCCEE
Q 014366 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMM-AKRVFLLDNGKL 403 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~D~i~vl~~G~i 403 (426)
...|.||-=---+.|.+ ++.-++|||||-|+|.+.-+-.++..|+++.+ |.-+||+||.+-.+.. --+|+-++.+-+
T Consensus 128 h~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~ 206 (233)
T COG3910 128 HHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI 206 (233)
T ss_pred hhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc
Confidence 46699997776677776 45679999999999999999999999999864 6789999999988764 568888988876
Q ss_pred EEec
Q 014366 404 EELN 407 (426)
Q Consensus 404 ~e~g 407 (426)
.+.+
T Consensus 207 ~~~~ 210 (233)
T COG3910 207 EERD 210 (233)
T ss_pred cccc
Confidence 5543
No 454
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.12 E-value=1.5e-10 Score=130.85 Aligned_cols=78 Identities=27% Similarity=0.245 Sum_probs=68.3
Q ss_pred CCCCCCChHHHHHHHHHHHhcC--------CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hc
Q 014366 323 PRGSSLSGGQRQRLAIARALYQ--------NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MA 392 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal~~--------~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~ 392 (426)
.++.+|||||+|+++|||||+. +|++|++||||++||+.+...+++.|..+. .++||++|||..+... ..
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence 5678999999999999999995 899999999999999999999999999885 5789999999777765 45
Q ss_pred CEEEEEeC
Q 014366 393 KRVFLLDN 400 (426)
Q Consensus 393 D~i~vl~~ 400 (426)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 67766654
No 455
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.07 E-value=3.9e-10 Score=103.94 Aligned_cols=119 Identities=22% Similarity=0.269 Sum_probs=75.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-ccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHH
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDME 295 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~-~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~ 295 (426)
.+.|+||+||||||+++.|++.+++. .|.|...+.++. +.. ....+++.|..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~---~~~~~~i~q~~----------------------- 55 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVH---ESKRSLINQRE----------------------- 55 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-ccc---cCccceeeecc-----------------------
Confidence 78999999999999999999888744 567665443321 100 00111111110
Q ss_pred HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC
Q 014366 296 RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG 375 (426)
Q Consensus 296 ~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~ 375 (426)
+|.....++. ++++++..+|+++++|||. |.++...+.+ ....
T Consensus 56 -------------------------vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~l~---~a~~ 98 (198)
T cd01131 56 -------------------------VGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLALT---AAET 98 (198)
T ss_pred -------------------------cCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHHHH---HHHc
Confidence 0000011111 4789999999999999996 6665443333 3345
Q ss_pred CceEEEeccChHHHHhcCEEEEEe
Q 014366 376 HHTVLVIAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 376 ~~tvi~itH~~~~~~~~D~i~vl~ 399 (426)
+.+++.++|..+.....||++.|-
T Consensus 99 G~~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 99 GHLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred CCEEEEEecCCcHHHHHhHHHhhc
Confidence 788999999998777788887663
No 456
>PRK02224 chromosome segregation protein; Provisional
Probab=99.04 E-value=4.4e-10 Score=125.76 Aligned_cols=77 Identities=32% Similarity=0.392 Sum_probs=67.6
Q ss_pred CCCCChHHHH------HHHHHHHhcCC-----C-CEEEeeccCCCCCHHHHHHHHHHHHHHcC-C-ceEEEeccChHHHH
Q 014366 325 GSSLSGGQRQ------RLAIARALYQN-----S-SVLILDEATSALDSRSELLVRQAVDRLLG-H-HTVLVIAHHLETVM 390 (426)
Q Consensus 325 g~~LSgGqkQ------Rl~iARal~~~-----p-~illlDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~~~~~~ 390 (426)
+..||||||| |+++|+++..+ | +++||||||++||+.....+.+.|..+.. + .+||+|||+...+.
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~ 858 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVG 858 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHH
Confidence 4689999999 99999999864 2 67999999999999999999999988753 3 47999999999998
Q ss_pred hcCEEEEEeCC
Q 014366 391 MAKRVFLLDNG 401 (426)
Q Consensus 391 ~~D~i~vl~~G 401 (426)
.||+++.|...
T Consensus 859 ~ad~~~~~~~~ 869 (880)
T PRK02224 859 AADDLVRVEKD 869 (880)
T ss_pred hcCeeEEeecC
Confidence 99999999754
No 457
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.02 E-value=1e-08 Score=86.81 Aligned_cols=117 Identities=38% Similarity=0.498 Sum_probs=80.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCc-cEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLS-GCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI 292 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~-G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~ 292 (426)
++..+.|+||+||||||+++.++..+.... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 467999999999999999999999887654 4455544332221111100
Q ss_pred CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHH----
Q 014366 293 DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQ---- 368 (426)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~---- 368 (426)
............+++..+..+++|-..+|+++++||+..-.+.........
T Consensus 51 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~ 105 (148)
T smart00382 51 -------------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEEL 105 (148)
T ss_pred -------------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhh
Confidence 001112335678888889999999888899999999999999988776554
Q ss_pred ---HHHHHcCCceEEEeccC
Q 014366 369 ---AVDRLLGHHTVLVIAHH 385 (426)
Q Consensus 369 ---~l~~~~~~~tvi~itH~ 385 (426)
..........+|+++|.
T Consensus 106 ~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 106 RLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHHHHhcCCCEEEEEeCC
Confidence 12222345688888884
No 458
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.00 E-value=6.8e-09 Score=98.08 Aligned_cols=74 Identities=16% Similarity=0.128 Sum_probs=53.9
Q ss_pred CCChHHHHHHHHHHHhcC--CCCEEEeeccCCCCC---HHHHHHHHHHHHHHc-CCceEEEeccChHH-------HH-hc
Q 014366 327 SLSGGQRQRLAIARALYQ--NSSVLILDEATSALD---SRSELLVRQAVDRLL-GHHTVLVIAHHLET-------VM-MA 392 (426)
Q Consensus 327 ~LSgGqkQRl~iARal~~--~p~illlDEpts~LD---~~~~~~i~~~l~~~~-~~~tvi~itH~~~~-------~~-~~ 392 (426)
..|.++++.+..++..+. +|+++++||||+.+| ......+.+.++.+. .+.|+++++|.... +. .+
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 456788999999999997 899999999996544 444445545555543 46799999997643 33 47
Q ss_pred CEEEEEeC
Q 014366 393 KRVFLLDN 400 (426)
Q Consensus 393 D~i~vl~~ 400 (426)
|-++.|+.
T Consensus 180 DgvI~L~~ 187 (234)
T PRK06067 180 DVYLKLRA 187 (234)
T ss_pred EEEEEEEe
Confidence 88888873
No 459
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.94 E-value=1.8e-09 Score=109.87 Aligned_cols=86 Identities=22% Similarity=0.263 Sum_probs=70.9
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEc---CEeCCCCCHHH-
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD---DHDVQNIRLDS- 260 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~---g~~i~~~~~~~- 260 (426)
.+.++.++++..|..+ ..+++.++ +|.+||+++|+||||||||||+++|+++.+|+.|.|.+. |.++.++..+.
T Consensus 137 p~~~~r~~v~~~l~TG-i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 137 PPAMTRARVETGLRTG-VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCCeEeecceEEcCCC-cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 3568999999999765 46899886 999999999999999999999999999999999999885 46655443322
Q ss_pred ---HhcceEEEecCC
Q 014366 261 ---LRRHVGLVSQDI 272 (426)
Q Consensus 261 ---~r~~i~~v~Q~~ 272 (426)
+++.+++|+|..
T Consensus 215 ~~~r~rtI~vV~qsd 229 (450)
T PRK06002 215 ADNLKKAVAVVATSD 229 (450)
T ss_pred HHhhCCeEEEEEcCC
Confidence 235799999965
No 460
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.91 E-value=4e-09 Score=105.53 Aligned_cols=81 Identities=23% Similarity=0.310 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcce-----------eeeEEEeCCCEEEEECC
Q 014366 155 GEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLD-----------QLNLHIRAGETVALIGP 223 (426)
Q Consensus 155 ~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~-----------~isl~i~~Ge~~~ivG~ 223 (426)
+..+.+|++++++.++..... +....+.++|+||+|.||+. +.+|+ |+++.|.+|+.++|+||
T Consensus 103 ~~~~~ER~~~Ll~v~~vn~~~-----~e~~~~ri~Fe~LTf~YP~e-r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~ 176 (415)
T TIGR00767 103 SPKEGERYFALLKVESVNGDD-----PEKAKNRVLFENLTPLYPNE-RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAP 176 (415)
T ss_pred ccccHhHHHHHhCCCccCCCC-----ccccCCCeEEEEeeecCCCc-cceeecCccccceeeeeeEEEeCCCCEEEEECC
Confidence 446789999999876542211 12234679999999999875 46897 99999999999999999
Q ss_pred CCCcHHHHHHHHhcCCCC
Q 014366 224 SGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 224 sGsGKSTLl~ll~g~~~p 241 (426)
+|||||||++.|...+..
T Consensus 177 ~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 177 PKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCCChhHHHHHHHHhhcc
Confidence 999999999999998754
No 461
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.87 E-value=5.8e-09 Score=96.32 Aligned_cols=66 Identities=35% Similarity=0.392 Sum_probs=53.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC------------CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHH
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYD------------PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVA 280 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~------------p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 280 (426)
++|++++|+||||||||||+++|++.++ |..|+ ++|.++..++..++++. +.++.+++.+++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEEC
Confidence 5899999999999999999999999985 77888 58888877777777664 3466666777888
Q ss_pred HHH
Q 014366 281 ENI 283 (426)
Q Consensus 281 eni 283 (426)
+|.
T Consensus 78 ~~~ 80 (205)
T PRK00300 78 GNY 80 (205)
T ss_pred Ccc
Confidence 773
No 462
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.80 E-value=1.8e-07 Score=103.96 Aligned_cols=53 Identities=30% Similarity=0.327 Sum_probs=47.3
Q ss_pred HHHHhcCCCCEEEeeccCCCC-CHHHHHHHHHHHHHHc-CCceEEEeccChHHHH
Q 014366 338 IARALYQNSSVLILDEATSAL-DSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM 390 (426)
Q Consensus 338 iARal~~~p~illlDEpts~L-D~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~ 390 (426)
|+|++..+|+++++|||+.+| |+...+.+.+.++..+ .+.+++++||+++.+.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~ 734 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAA 734 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 688999999999999999999 7899999999998875 4679999999998774
No 463
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.79 E-value=6.6e-10 Score=115.99 Aligned_cols=156 Identities=15% Similarity=0.158 Sum_probs=99.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHH--hcCCCCCccEEEEcCEeCCCCCHHHHh---cceEEEecCCCCCcccHHHHHcC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLL--LRLYDPLSGCILVDDHDVQNIRLDSLR---RHVGLVSQDITLFSGTVAENIGY 285 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll--~g~~~p~~G~I~~~g~~i~~~~~~~~r---~~i~~v~Q~~~lf~~ti~eni~~ 285 (426)
-+++|..+.|.|++|||||||..-. .|..++.+.-+++... -++++++ +.+||-.++..- .+++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 4889999999999999999999865 4555545566776553 2344443 345655543210 011111
Q ss_pred CCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH--HHhcCCCCEEEeeccCCCCCHHHH
Q 014366 286 RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA--RALYQNSSVLILDEATSALDSRSE 363 (426)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA--Ral~~~p~illlDEpts~LD~~~~ 363 (426)
-... +........+..++.++++.++ ..+|+|++|||.|+ .++..+|+.. ...+
T Consensus 88 ~~~~---~~~~~~~~~~~~~l~~~l~~i~-----------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r 143 (484)
T TIGR02655 88 LDAS---PDPEGQDVVGGFDLSALIERIN-----------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVR 143 (484)
T ss_pred EecC---chhccccccccCCHHHHHHHHH-----------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHH
Confidence 1000 0011112234445566665544 58899999999999 6666665543 4667
Q ss_pred HHHHHHHHHHc-CCceEEEeccChHH--------H-H-hcCEEEEEe
Q 014366 364 LLVRQAVDRLL-GHHTVLVIAHHLET--------V-M-MAKRVFLLD 399 (426)
Q Consensus 364 ~~i~~~l~~~~-~~~tvi~itH~~~~--------~-~-~~D~i~vl~ 399 (426)
+.+.+.++.++ .++|+|+++|+.+. + . .||.|+.|+
T Consensus 144 ~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 144 REIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 77888887765 47899999998753 2 3 489999887
No 464
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.78 E-value=5e-09 Score=106.56 Aligned_cols=81 Identities=25% Similarity=0.213 Sum_probs=63.0
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc---EEEEcCEeCCCCCHHHH------hcceEEEecCCC
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG---CILVDDHDVQNIRLDSL------RRHVGLVSQDIT 273 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G---~I~~~g~~i~~~~~~~~------r~~i~~v~Q~~~ 273 (426)
.+++++ |++.+|++++|+|+||||||||+++|+|+++|+.+ .|-.+|.++.++..+.+ |..+++++|+..
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s 222 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES 222 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence 589999 99999999999999999999999999999998864 33344444444332222 456999999988
Q ss_pred CCc-ccHHHHHc
Q 014366 274 LFS-GTVAENIG 284 (426)
Q Consensus 274 lf~-~ti~eni~ 284 (426)
.+. .++.++..
T Consensus 223 ~~~rl~a~e~a~ 234 (434)
T PRK07196 223 PLMRIKATELCH 234 (434)
T ss_pred hhhhHHHHHHHH
Confidence 774 47888764
No 465
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.75 E-value=1.2e-08 Score=102.69 Aligned_cols=63 Identities=30% Similarity=0.395 Sum_probs=56.9
Q ss_pred CCCChHHHHHHHHHHHhcC---------CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH
Q 014366 326 SSLSGGQRQRLAIARALYQ---------NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM 390 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~~---------~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~ 390 (426)
..+|.||+++++||.+|+. +|+|+|||||+|+||+..++.+.+.|.+. +.+++++||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 4689999999999999999 99999999999999999999999999754 568999999987653
No 466
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.73 E-value=2e-08 Score=103.61 Aligned_cols=60 Identities=25% Similarity=0.317 Sum_probs=48.0
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcC
Q 014366 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY 285 (426)
Q Consensus 207 ~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~ 285 (426)
+.++.+++|++++++||||+||||++..|++.+.+..|. ++|+++++|+ |..+..|++.+
T Consensus 248 ~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt--~RigA~EQLr~ 307 (484)
T PRK06995 248 SEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS--YRIGGHEQLRI 307 (484)
T ss_pred CccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc--cchhHHHHHHH
Confidence 344456678999999999999999999999988766663 2578999887 66678888864
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.71 E-value=1.2e-08 Score=93.00 Aligned_cols=77 Identities=25% Similarity=0.275 Sum_probs=55.3
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCC--CCc-ccHH
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT--LFS-GTVA 280 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~--lf~-~ti~ 280 (426)
..+=+.+.+++|+.++|+|||||||||+++.|+|+++|+.|.|.+.+..-...+ .+..+++++|... .++ .|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 444556779999999999999999999999999999999999999764322221 2344666665543 222 3555
Q ss_pred HHH
Q 014366 281 ENI 283 (426)
Q Consensus 281 eni 283 (426)
+.+
T Consensus 91 ~~l 93 (186)
T cd01130 91 DLL 93 (186)
T ss_pred HHH
Confidence 554
No 468
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.67 E-value=2.2e-07 Score=95.27 Aligned_cols=184 Identities=18% Similarity=0.163 Sum_probs=108.2
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 281 (426)
..+++++ +++.+||+++|+|+||+|||||+++|+|..+|+.|.+...|..-+++. ++... +......+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~--~~~~~---------~~~~~~l~ 218 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVR--EFIEH---------DLGEEGLK 218 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHH--HHHHH---------Hhcccccc
Confidence 3589999 999999999999999999999999999999999988777665443321 11100 00000011
Q ss_pred HH-cCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCC-hHHHHHHHHHHHhcCCCCEEEeeccCCCCC
Q 014366 282 NI-GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLS-GGQRQRLAIARALYQNSSVLILDEATSALD 359 (426)
Q Consensus 282 ni-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LS-gGqkQRl~iARal~~~p~illlDEpts~LD 359 (426)
+. .+.....+...++...+.-.+.+.++... .|.|-.+=- .+|+ --|.|| .++- .+.+|+ .+.|.|
T Consensus 219 ~tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~--DslTr~A~A~R-Eisl-~~ge~P------~~~Gyp 286 (440)
T TIGR01026 219 RSVVVVATSDQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLM--DSVTRFAMAQR-EIGL-AAGEPP------ATKGYT 286 (440)
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEE--eChHHHHHHHH-HHHH-hcCCCC------cccccC
Confidence 11 01000001112333322233334444433 254432210 1222 122222 1111 123333 467999
Q ss_pred HHHHHHHHHHHHHHcC-Cc-------eEEEeccChHHHHhcCEEEEEeCCEEEEecccc
Q 014366 360 SRSELLVRQAVDRLLG-HH-------TVLVIAHHLETVMMAKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 360 ~~~~~~i~~~l~~~~~-~~-------tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~ 410 (426)
+.....+.+.+.+... ++ ||++-+|++. -..||++.-+.||+|+-.++..
T Consensus 287 p~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr~la 344 (440)
T TIGR01026 287 PSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSRALA 344 (440)
T ss_pred hhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEecchh
Confidence 9999999999988743 45 8888999983 2368999999999998766543
No 469
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.66 E-value=8.2e-08 Score=95.99 Aligned_cols=121 Identities=22% Similarity=0.310 Sum_probs=75.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCC-CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYD-PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMT 290 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~ 290 (426)
.+++..+.|.||+||||||+++.+.+.++ +.+|.|..-+.++.-. .......+.|.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q~------------------- 175 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQR------------------- 175 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEcc-------------------
Confidence 35788999999999999999999998766 4467776544332100 00000111110
Q ss_pred CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHH
Q 014366 291 KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAV 370 (426)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l 370 (426)
.+|....+ -.-++++||-.+|+++++||+. |+++.....+.
T Consensus 176 -----------------------------evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a- 216 (343)
T TIGR01420 176 -----------------------------EVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALTA- 216 (343)
T ss_pred -----------------------------ccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH-
Confidence 00000001 1124678888999999999997 88877654443
Q ss_pred HHHcCCceEEEeccChHHHHhcCEEE
Q 014366 371 DRLLGHHTVLVIAHHLETVMMAKRVF 396 (426)
Q Consensus 371 ~~~~~~~tvi~itH~~~~~~~~D~i~ 396 (426)
...|.+++.+.|..+.....+|++
T Consensus 217 --a~tGh~v~~T~Ha~~~~~~~~Rl~ 240 (343)
T TIGR01420 217 --AETGHLVFGTLHTNSAAQTIERII 240 (343)
T ss_pred --HHcCCcEEEEEcCCCHHHHHHHHH
Confidence 345788999999976655445443
No 470
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.64 E-value=7.4e-08 Score=91.36 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=36.1
Q ss_pred hcCCCCEEEeeccCCC------CCHHHHHHHHHHHHHHc--CCceEEEeccCh
Q 014366 342 LYQNSSVLILDEATSA------LDSRSELLVRQAVDRLL--GHHTVLVIAHHL 386 (426)
Q Consensus 342 l~~~p~illlDEpts~------LD~~~~~~i~~~l~~~~--~~~tvi~itH~~ 386 (426)
...+|+++++| |+++ +|+.....+.+.|.++. .+.|+++++|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 35799999999 7754 69988888998888764 368999999976
No 471
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.63 E-value=4e-07 Score=91.48 Aligned_cols=172 Identities=25% Similarity=0.345 Sum_probs=114.8
Q ss_pred EEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHh-cCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecC
Q 014366 193 ISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL-RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQD 271 (426)
Q Consensus 193 v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~-g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~ 271 (426)
|++..|++. .+.+ +-|++| ++.|+|.+=-||||||+.|. |.|+---| ||.+ ||--+
T Consensus 227 ve~~LP~~g--~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE--------------~VVT~ 283 (448)
T PF09818_consen 227 VEIELPNGG--TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGRE--------------FVVTD 283 (448)
T ss_pred EEEECCCCC--EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCce--------------EEEEC
Confidence 667666542 4454 478999 99999999999999999986 77764333 2321 11111
Q ss_pred CCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEe
Q 014366 272 ITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLIL 351 (426)
Q Consensus 272 ~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illl 351 (426)
+... .|+ .. + -+....+++..|++.||.|.||. .-.-.+=||-.-|=-.|..|+=..+++||+
T Consensus 284 ~~av--kir------AE----D----GR~V~~vDISpFI~~LP~g~dT~-~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLi 346 (448)
T PF09818_consen 284 PDAV--KIR------AE----D----GRSVEGVDISPFINNLPGGKDTT-CFSTENASGSTSQAANIMEALEAGARLLLI 346 (448)
T ss_pred CCce--EEE------ec----C----CceEeCccchHHHhhCCCCCCCC-cccccCCCchHHHHHHHHHHHHcCCCEEEE
Confidence 1100 010 00 0 11234556889999999999987 333457799999999999999999999999
Q ss_pred eccCCCCCHHH-----HHHH----------HHHHHHHc--CCc-eEEEeccChHHHHhcCEEEEEeCCEEE
Q 014366 352 DEATSALDSRS-----ELLV----------RQAVDRLL--GHH-TVLVIAHHLETVMMAKRVFLLDNGKLE 404 (426)
Q Consensus 352 DEpts~LD~~~-----~~~i----------~~~l~~~~--~~~-tvi~itH~~~~~~~~D~i~vl~~G~i~ 404 (426)
||=||+-.-.- ++.+ .+.++++. .+- ||+++.---+.+..||+|++|++=+-.
T Consensus 347 DEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~ 417 (448)
T PF09818_consen 347 DEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRPK 417 (448)
T ss_pred cCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccch
Confidence 99999976543 3322 22233442 243 555554444667899999999987654
No 472
>PRK01889 GTPase RsgA; Reviewed
Probab=98.62 E-value=3.6e-08 Score=98.93 Aligned_cols=81 Identities=30% Similarity=0.342 Sum_probs=66.2
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHH
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI 283 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni 283 (426)
-++.+.-.+++|++++++|+||+|||||++.|+|..+|..|+|.+++..-.. ...++++.+++|+..+++.+...|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 3556666788999999999999999999999999999999999998754322 2335679999999999988777777
Q ss_pred cCCC
Q 014366 284 GYRD 287 (426)
Q Consensus 284 ~~~~ 287 (426)
.+..
T Consensus 261 ~l~~ 264 (356)
T PRK01889 261 QLWD 264 (356)
T ss_pred cccC
Confidence 6653
No 473
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.62 E-value=2.1e-08 Score=92.20 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=61.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHH-----HcCCCCCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN-----IGYRDLMTK 291 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~en-----i~~~~~~~~ 291 (426)
+++|+||||||||||.+.|.+++ ..|.+.+-+ +|.+..+.+..++ ..+..+. .
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~-------------------~D~~~~~~~~~~~~~~~~~~~~~~~-~ 58 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIIS-------------------QDSYYKDLSHEELEERKNNNYDHPD-A 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEE-------------------ecccccccccccHHHhccCCCCCCC-c
Confidence 48999999999999999999988 334443333 3322111111111 1111111 1
Q ss_pred CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHH
Q 014366 292 IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361 (426)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~ 361 (426)
.+.+...+.+.. +. .| ..+..+..+.|.|++++..+ .+.+|+++|+|+|+...++.
T Consensus 59 ~~~~~~~~~l~~-----l~----~~--~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 59 FDFDLLISHLQD-----LK----NG--KSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred ccHHHHHHHHHH-----HH----CC--CCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 222222222221 11 11 12333456788888776555 57889999999999999863
No 474
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.61 E-value=1.2e-07 Score=106.54 Aligned_cols=79 Identities=24% Similarity=0.278 Sum_probs=68.2
Q ss_pred CCCCCCChHHHHHHHHHHHh------cCC--CCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHhcC
Q 014366 323 PRGSSLSGGQRQRLAIARAL------YQN--SSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMMAK 393 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal------~~~--p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~D 393 (426)
....+|||||+=.++||-+| ..+ -+.++|||||..||+++...+.+.|..+.. +.+|++|||+.+....+|
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~ 890 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERAD 890 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCC
Confidence 45679999999876666554 456 699999999999999999999999999865 589999999999999999
Q ss_pred EEEEEeCC
Q 014366 394 RVFLLDNG 401 (426)
Q Consensus 394 ~i~vl~~G 401 (426)
.++.++..
T Consensus 891 ~~i~V~k~ 898 (908)
T COG0419 891 VRIRVKKD 898 (908)
T ss_pred eEEEEEec
Confidence 99988754
No 475
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.57 E-value=2.3e-06 Score=94.93 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=41.9
Q ss_pred HhcCCCCEEEeeccCCCCC-HHHHHHHHHHHHHHc-CCceEEEeccChHHH
Q 014366 341 ALYQNSSVLILDEATSALD-SRSELLVRQAVDRLL-GHHTVLVIAHHLETV 389 (426)
Q Consensus 341 al~~~p~illlDEpts~LD-~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~ 389 (426)
.+-.+|.++++|||...|| +...+.+.+.++..+ .+..++++||+++.+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~ 688 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA 688 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 4567899999999999999 788889999988875 367899999998664
No 476
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.57 E-value=1.1e-07 Score=95.29 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=72.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC--Ccc-EEEEcCEeCCCCCHHHHhcceEEEecCCC-----CCcccHHHHHc
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP--LSG-CILVDDHDVQNIRLDSLRRHVGLVSQDIT-----LFSGTVAENIG 284 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p--~~G-~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~-----lf~~ti~eni~ 284 (426)
++|..++|+||+||||||++++|++.+.+ .++ .|.....++ ++..+.++...++++|... -|...++++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48899999999999999999999999843 334 565554444 4555555556788888642 35668888886
Q ss_pred CCCCC----CCCCHHHHHHHHHH-------------hchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 285 YRDLM----TKIDMERVEHTART-------------ANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 285 ~~~~~----~~~~~~~~~~~~~~-------------~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
..... .-.+.+.+..+++. .++.+.+.++- ..+|+||+--+
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlHa~~~~~~i~Rl~-----------~~~~~~~~~~~ 268 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAALEAALTGHPVYTTLHSSGVAETIRRLV-----------GSFPAEERIGR 268 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeeccCCHHHHHHHHH-----------HhCCccchhhH
Confidence 53211 11234445556665 44445555542 35788876433
No 477
>PRK08149 ATP synthase SpaL; Validated
Probab=98.56 E-value=7.2e-08 Score=98.00 Aligned_cols=69 Identities=20% Similarity=0.267 Sum_probs=58.9
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---cEEEEcCEeCCCCCHHHHh----cceEEEecCC
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS---GCILVDDHDVQNIRLDSLR----RHVGLVSQDI 272 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~---G~I~~~g~~i~~~~~~~~r----~~i~~v~Q~~ 272 (426)
.+++++ +++.+||+++|+|+||+|||||+++|++..+++. |.|-.+|.++.++..+.++ +++++|+...
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 589999 9999999999999999999999999999999987 8999999988776544433 5677777644
No 478
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.56 E-value=8.5e-08 Score=87.42 Aligned_cols=55 Identities=27% Similarity=0.425 Sum_probs=46.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDI 272 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~ 272 (426)
|++++|+||||||||||+++|++...| .+.+.+..+........+..+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999998876 5888888777655555667788888875
No 479
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.55 E-value=3.6e-07 Score=101.36 Aligned_cols=67 Identities=22% Similarity=0.161 Sum_probs=45.5
Q ss_pred CCChHHHHHHHHHHHhcC--CCCEEEeecc---CCCCCHHH-HHHHHHHHHHHcCCceEEEeccChHHHHhcCE
Q 014366 327 SLSGGQRQRLAIARALYQ--NSSVLILDEA---TSALDSRS-ELLVRQAVDRLLGHHTVLVIAHHLETVMMAKR 394 (426)
Q Consensus 327 ~LSgGqkQRl~iARal~~--~p~illlDEp---ts~LD~~~-~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~ 394 (426)
.+|.-+.....+++++-. ++.++|+||| |+.+|... ...+.+.|.+. .+++++++||..+....+++
T Consensus 666 g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~-~~~~~l~aTH~~el~~l~~~ 738 (854)
T PRK05399 666 GRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDK-IGAKTLFATHYHELTELEEK 738 (854)
T ss_pred CcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhc-CCceEEEEechHHHHHHhhh
Confidence 456666666666666654 8999999999 99999654 22244444332 24789999999776666654
No 480
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.54 E-value=1.4e-07 Score=109.39 Aligned_cols=64 Identities=20% Similarity=0.221 Sum_probs=56.0
Q ss_pred CCCCCCCChHHHHHHH----HHHH--------hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChH
Q 014366 322 GPRGSSLSGGQRQRLA----IARA--------LYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLE 387 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~----iARa--------l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 387 (426)
..+...||||||||++ +|++ +..+|++++|||||++||+.+...+++.+.++ +.++||+||++-
T Consensus 1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSEREW 1317 (1353)
T ss_pred hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccchh
Confidence 3346899999999996 5755 55899999999999999999999999999888 678999999873
No 481
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.50 E-value=1.1e-07 Score=86.01 Aligned_cols=65 Identities=23% Similarity=0.379 Sum_probs=46.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc-ceEEEecCCCCC-cccHHHHHc
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR-HVGLVSQDITLF-SGTVAENIG 284 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~-~i~~v~Q~~~lf-~~ti~eni~ 284 (426)
+||+++|+|+|||||||++++|++++.| +.++|.++... ..+|+ ..++.+|+...+ ..++.+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 68 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDEDRLPWLERLNDAS 68 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 6999999999999999999999999877 58899877432 22332 356666664433 335555553
No 482
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.45 E-value=2.2e-07 Score=87.34 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=38.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHh-cCCCCCccEEEEcCEeCCCCCHHHH---hcceEEEecCC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLL-RLYDPLSGCILVDDHDVQNIRLDSL---RRHVGLVSQDI 272 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~-g~~~p~~G~I~~~g~~i~~~~~~~~---r~~i~~v~Q~~ 272 (426)
-+++|+.+.|.||+|||||||...++ ....+.++.+++.... +.+++ .+.+++.+|+.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~----~~~~i~~~~~~~g~~~~~~ 77 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE----SRESIIRQAAQFGMDFEKA 77 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHhCCCHHHH
Confidence 58899999999999999999987554 2334555667776532 23332 33466666643
No 483
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.44 E-value=1.2e-07 Score=87.97 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=27.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999864
No 484
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.42 E-value=1.3e-06 Score=100.51 Aligned_cols=44 Identities=30% Similarity=0.474 Sum_probs=36.7
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhc-CCCCCccEEEEcC
Q 014366 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLR-LYDPLSGCILVDD 250 (426)
Q Consensus 207 ~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g-~~~p~~G~I~~~g 250 (426)
-+++..+++++++|+|++|+|||||++.+.+ +....+|.+++++
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 3567788899999999999999999999954 4455689998875
No 485
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.40 E-value=5.8e-07 Score=81.14 Aligned_cols=62 Identities=21% Similarity=0.237 Sum_probs=44.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE-----------cCEeCCCCCHHHH-----hcceEEEecCCCCCcc
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV-----------DDHDVQNIRLDSL-----RRHVGLVSQDITLFSG 277 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~-----------~g~~i~~~~~~~~-----r~~i~~v~Q~~~lf~~ 277 (426)
|++++|+|||||||||+++.|++.+.+. |.+.+ +|.+....+.+++ .+.++.++|...++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 65544 5555555554443 2347788887665544
No 486
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.38 E-value=9.7e-07 Score=94.68 Aligned_cols=110 Identities=21% Similarity=0.224 Sum_probs=67.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCcc--------EEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSG--------CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY 285 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G--------~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~ 285 (426)
..+.+.|+||+|+||||+++++.++.++..| -+.++|.++. .+...+ .|-.+
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i-------------------~~~ll 233 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREV-------------------TNPLL 233 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHH-------------------hHHhc
Confidence 4567999999999999999999998865444 4777765542 122111 11112
Q ss_pred CCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHH
Q 014366 286 RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELL 365 (426)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~ 365 (426)
+.. .+...+...+.++..++.+.. ......+||| +|+||| +..||+..+..
T Consensus 234 g~~-~~~~~~~a~~~l~~~gl~~~~-----------~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~ 284 (615)
T TIGR02903 234 GSV-HDPIYQGARRDLAETGVPEPK-----------TGLVTDAHGG----------------VLFIDE-IGELDPLLQNK 284 (615)
T ss_pred CCc-cHHHHHHHHHHHHHcCCCchh-----------cCchhhcCCC----------------eEEEec-cccCCHHHHHH
Confidence 211 000011122233333333222 2233577888 999999 79999999999
Q ss_pred HHHHHHH
Q 014366 366 VRQAVDR 372 (426)
Q Consensus 366 i~~~l~~ 372 (426)
+.+.+++
T Consensus 285 Ll~~Le~ 291 (615)
T TIGR02903 285 LLKVLED 291 (615)
T ss_pred HHHHHhh
Confidence 9999875
No 487
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.36 E-value=3.7e-07 Score=93.28 Aligned_cols=82 Identities=20% Similarity=0.309 Sum_probs=59.7
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-CccEEEEc---CEeCCCCCHHHHh---cceEEE-----ec
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVD---DHDVQNIRLDSLR---RHVGLV-----SQ 270 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~I~~~---g~~i~~~~~~~~r---~~i~~v-----~Q 270 (426)
.+++++ |++.+||+++|+|+||||||||+++|+|+.++ +.|.|.+. |.++.++..+.++ .+.+++ +|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 478887 99999999999999999999999999999854 44667664 4666555444443 235556 89
Q ss_pred CCCC-----C-cccHHHHHcC
Q 014366 271 DITL-----F-SGTVAENIGY 285 (426)
Q Consensus 271 ~~~l-----f-~~ti~eni~~ 285 (426)
+|.. + ..++.|.++.
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~ 252 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRD 252 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHH
Confidence 8742 1 2367787753
No 488
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.32 E-value=8.3e-06 Score=90.59 Aligned_cols=63 Identities=22% Similarity=0.246 Sum_probs=48.7
Q ss_pred HHhcCCCCEEEeeccCCCCC-HHHHHHHHHHHHHHc-CCceEEEeccChHHH----------HhcCEEEEEeCCE
Q 014366 340 RALYQNSSVLILDEATSALD-SRSELLVRQAVDRLL-GHHTVLVIAHHLETV----------MMAKRVFLLDNGK 402 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD-~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~----------~~~D~i~vl~~G~ 402 (426)
+.+-.+|+++++|||+..|| +...+.+.+.++..+ .+.+++++||+++.+ ..|+..++|.+.+
T Consensus 630 ~~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~~ 704 (811)
T PRK13873 630 DRFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNER 704 (811)
T ss_pred HHhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCch
Confidence 33456899999999999999 677888888888774 467999999998744 2466666666643
No 489
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.31 E-value=4.4e-06 Score=71.18 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc------CCceEEEeccChH
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL------GHHTVLVIAHHLE 387 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~~~ 387 (426)
.+.....++...++.++++||.-.. ++.....+.+.+.... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5556666777889999999998765 6666777788887763 3568888888654
No 490
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.31 E-value=5.5e-07 Score=88.89 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=53.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC------CHHHHhcceEEEecCCCCCcc-cHHHHH
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI------RLDSLRRHVGLVSQDITLFSG-TVAENI 283 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~------~~~~~r~~i~~v~Q~~~lf~~-ti~eni 283 (426)
++|++++++|||||||||++..|++.+.+..|+|.+.+.|.... .....+..+.+++|.....+. ++++++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l 189 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAI 189 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHH
Confidence 46899999999999999999999999999889999988776432 112235568888886544332 445554
No 491
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.30 E-value=6.9e-07 Score=91.08 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=57.4
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i 253 (426)
..++.++++..|..+ ..+++++ +++.+||+++|+|+||+|||||+++|+|..+++.|.+.+.|..-
T Consensus 128 ~~~~r~~v~~~l~tG-i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRg 193 (433)
T PRK07594 128 PAMVRQPITQPLMTG-IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG 193 (433)
T ss_pred CceeccCHhheeCCC-ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCc
Confidence 357778888888654 4699999 99999999999999999999999999999999999888877643
No 492
>PLN02796 D-glycerate 3-kinase
Probab=98.28 E-value=2.7e-07 Score=91.05 Aligned_cols=61 Identities=26% Similarity=0.451 Sum_probs=49.9
Q ss_pred CcceeeeEEE---eCCCE-----EEEECCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCCHHHHhc
Q 014366 203 LVLDQLNLHI---RAGET-----VALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIRLDSLRR 263 (426)
Q Consensus 203 ~~l~~isl~i---~~Ge~-----~~ivG~sGsGKSTLl~ll~g~~~p~---~G~I~~~g~~i~~~~~~~~r~ 263 (426)
.+++++++++ ++|+. +||+|+||||||||++.|.+++++. .|.|.+||..+.......+++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 4788888887 67776 9999999999999999999999875 588999998876554444443
No 493
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.28 E-value=7.1e-07 Score=92.87 Aligned_cols=63 Identities=24% Similarity=0.290 Sum_probs=56.5
Q ss_pred EEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 014366 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ 254 (426)
Q Consensus 190 ~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~ 254 (426)
++|++..|+.. .+++++++.+..|+.++++||||||||||++.|.|+++|.+|++.+++..+.
T Consensus 187 ~~d~~~v~Gq~--~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVIGQE--QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEECcH--HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 45888888643 5899999999999999999999999999999999999999999999886653
No 494
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.26 E-value=2.2e-06 Score=99.67 Aligned_cols=143 Identities=15% Similarity=0.268 Sum_probs=81.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHH----hcCCCCC-ccEEEEcCEeCCCCCHHHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL----LRLYDPL-SGCILVDDHDVQNIRLDSL 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll----~g~~~p~-~G~I~~~g~~i~~~~~~~~ 261 (426)
.+.++|+ .+|++.+. --.-|.| .+| +++|+|||||||||++.+| .|..+|. +|.+++.+.++... ...
T Consensus 5 kl~i~g~-rSf~~~~~-~~~~I~F--~~~-~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~--~~~ 77 (1311)
T TIGR00606 5 KMSILGV-RSFGIEDK-DKQIIDF--FSP-LTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQE--TDV 77 (1311)
T ss_pred eeeeece-ecCCCccc-cceeeec--ccc-eEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCcc--Hhh
Confidence 4778887 35643110 0122344 344 9999999999999999999 5999996 78888887665432 355
Q ss_pred hcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 262 RRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 262 r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
+..|.++|++..-...+|.-.+............. +.......++|-...+..+...++.+..+.+.+..+
T Consensus 78 ~a~V~l~F~~~~g~~~~v~R~~~~~~~~~~~~~~~---------~~~~~~~~~~g~~~~~s~~~~e~~~~i~~~lGv~~~ 148 (1311)
T TIGR00606 78 RAQIRLQFRDVNGEECAVVRSMVCTQKTKKTEFKT---------LEGVITRYKHGEKVSLSSKCAEIDREMISHLGVSKA 148 (1311)
T ss_pred hheeEEEEEcCCCCEEEEEeeeeeeeccCcccchh---------hhhhheecCCCceeeccccHHHHHHHHHHHhCCCHH
Confidence 67788888754333222222221110000000000 111111223343333444555777889999988887
Q ss_pred hcCC
Q 014366 342 LYQN 345 (426)
Q Consensus 342 l~~~ 345 (426)
.+.+
T Consensus 149 ~f~~ 152 (1311)
T TIGR00606 149 VLNN 152 (1311)
T ss_pred HHhh
Confidence 7664
No 495
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.26 E-value=6.4e-06 Score=72.11 Aligned_cols=49 Identities=8% Similarity=0.119 Sum_probs=36.2
Q ss_pred cCCCCCCCChHHHHHHHHHHH-----hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHH
Q 014366 321 IGPRGSSLSGGQRQRLAIARA-----LYQNSSVLILDEATSALDSRSELLVRQAVDRL 373 (426)
Q Consensus 321 ~~~~g~~LSgGqkQRl~iARa-----l~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 373 (426)
+..+...+|++++++...... ....|+++ |+|++|.....++.+.|.++
T Consensus 116 v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 116 VLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 444556678898887765554 24556766 99999999999999888754
No 496
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.26 E-value=1.2e-06 Score=64.57 Aligned_cols=39 Identities=26% Similarity=0.458 Sum_probs=30.3
Q ss_pred ceeeeEEEeC-CCEEEEECCCCCcHHHHHHHHhcCCCCCc
Q 014366 205 LDQLNLHIRA-GETVALIGPSGGGKSTLAKLLLRLYDPLS 243 (426)
Q Consensus 205 l~~isl~i~~-Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~ 243 (426)
+++-++++.+ |+.+.|.|||||||||++.++.=++-|..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 3445677775 57999999999999999999876554443
No 497
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.25 E-value=1.6e-06 Score=85.41 Aligned_cols=59 Identities=24% Similarity=0.242 Sum_probs=49.5
Q ss_pred EEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC
Q 014366 193 ISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (426)
Q Consensus 193 v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i 253 (426)
++..|..+ ..+++++ +++.+||+++|+|+||+|||||+++|+|..+|+.|.+..-|++-
T Consensus 49 ~~~~l~tG-i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~ 107 (326)
T cd01136 49 IDEVLPTG-VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERG 107 (326)
T ss_pred ceeEcCCC-cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCC
Confidence 33445443 3589999 99999999999999999999999999999999998887766543
No 498
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.25 E-value=1.5e-06 Score=80.25 Aligned_cols=57 Identities=19% Similarity=0.266 Sum_probs=43.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL 274 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~l 274 (426)
.++|+||+|||||||++.+.+.+++..| +.+-..+.......++....++++|+..+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 59 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERIL 59 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCcee
Confidence 6899999999999999999999887655 55545565554455566677888887654
No 499
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.24 E-value=1e-06 Score=83.06 Aligned_cols=33 Identities=36% Similarity=0.468 Sum_probs=30.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I 246 (426)
+..++||.||||||||||++.|.+++++++|.+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 457999999999999999999999999999983
No 500
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.23 E-value=3.1e-06 Score=77.25 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHH--H-HhcCEEEEEeCC
Q 014366 331 GQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLET--V-MMAKRVFLLDNG 401 (426)
Q Consensus 331 GqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~-~~~D~i~vl~~G 401 (426)
|+-+|..||.++..+|+.+..+| +-+||...+++.+.+.+... +.++++.+|.+.. + ..||++++++.+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 78899999999999999988887 78999999999999987753 4699999999854 3 479999999876
Done!