Query 014366
Match_columns 426
No_of_seqs 492 out of 2510
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 10:16:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1.1E-80 3.8E-85 710.6 51.0 412 3-416 229-643 (1321)
2 3qf4_A ABC transporter, ATP-bi 100.0 4.3E-80 1.5E-84 655.2 48.9 411 4-416 157-568 (587)
3 4a82_A Cystic fibrosis transme 100.0 2.8E-80 9.7E-85 656.0 46.1 412 3-416 154-566 (578)
4 2yl4_A ATP-binding cassette SU 100.0 1.3E-78 4.5E-83 645.4 54.6 413 3-415 155-571 (595)
5 3b5x_A Lipid A export ATP-bind 100.0 1.9E-78 6.5E-83 642.7 52.8 411 3-416 158-569 (582)
6 3b60_A Lipid A export ATP-bind 100.0 1.7E-78 5.8E-83 643.0 47.6 410 3-415 158-568 (582)
7 4f4c_A Multidrug resistance pr 100.0 2.3E-80 8E-85 707.9 33.7 415 3-417 889-1307(1321)
8 3qf4_B Uncharacterized ABC tra 100.0 3.2E-79 1.1E-83 650.1 39.2 410 3-416 170-580 (598)
9 3g5u_A MCG1178, multidrug resi 100.0 8.4E-75 2.9E-79 660.6 39.1 411 3-415 201-614 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 1.7E-71 5.7E-76 633.5 36.4 414 3-416 844-1260(1284)
11 3nh6_A ATP-binding cassette SU 100.0 2.4E-67 8.3E-72 513.0 25.5 265 148-415 14-278 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 1.6E-59 5.6E-64 445.9 28.7 228 186-415 6-233 (247)
13 2ghi_A Transport protein; mult 100.0 1.3E-57 4.3E-62 436.1 26.0 227 186-415 16-243 (260)
14 1mv5_A LMRA, multidrug resista 100.0 1E-58 3.5E-63 439.6 18.1 226 188-415 2-227 (243)
15 2ixe_A Antigen peptide transpo 100.0 1.6E-57 5.6E-62 437.7 26.7 229 186-415 15-246 (271)
16 3gd7_A Fusion complex of cysti 100.0 1.4E-57 4.7E-62 457.5 23.7 235 185-423 17-251 (390)
17 3tui_C Methionine import ATP-b 100.0 5.9E-56 2E-60 440.3 21.5 220 186-416 23-255 (366)
18 2pze_A Cystic fibrosis transme 100.0 3.8E-55 1.3E-59 411.5 25.6 214 186-415 5-219 (229)
19 3tif_A Uncharacterized ABC tra 100.0 1.4E-55 4.7E-60 415.9 20.4 215 188-413 2-233 (235)
20 3gfo_A Cobalt import ATP-bindi 100.0 1.4E-55 4.6E-60 424.6 20.0 219 187-417 7-236 (275)
21 2cbz_A Multidrug resistance-as 100.0 6.6E-55 2.3E-59 411.8 21.0 213 187-415 3-218 (237)
22 3fvq_A Fe(3+) IONS import ATP- 100.0 2.3E-54 7.7E-59 428.7 22.5 221 187-420 4-234 (359)
23 3rlf_A Maltose/maltodextrin im 100.0 1.9E-54 6.5E-59 432.0 20.4 220 187-421 3-230 (381)
24 4g1u_C Hemin import ATP-bindin 100.0 5.9E-54 2E-58 411.8 22.5 216 187-415 11-238 (266)
25 1ji0_A ABC transporter; ATP bi 100.0 1.1E-53 3.9E-58 404.2 24.1 220 187-415 6-229 (240)
26 2olj_A Amino acid ABC transpor 100.0 6.6E-54 2.3E-58 410.5 21.8 217 187-416 24-250 (263)
27 2pcj_A ABC transporter, lipopr 100.0 1.4E-53 4.8E-58 399.5 21.5 209 187-408 4-222 (224)
28 1b0u_A Histidine permease; ABC 100.0 1.8E-53 6.1E-58 407.8 21.9 217 187-416 6-244 (262)
29 2yyz_A Sugar ABC transporter, 100.0 1.9E-53 6.6E-58 423.1 22.7 217 187-418 3-227 (359)
30 1vpl_A ABC transporter, ATP-bi 100.0 3E-53 1E-57 404.5 21.8 216 185-414 13-235 (256)
31 1g6h_A High-affinity branched- 100.0 1.4E-53 4.7E-58 407.6 19.0 216 187-411 7-239 (257)
32 1z47_A CYSA, putative ABC-tran 100.0 2E-53 6.9E-58 422.0 20.8 217 186-417 13-238 (355)
33 1v43_A Sugar-binding transport 100.0 4.4E-53 1.5E-57 422.4 22.5 219 187-420 11-237 (372)
34 2it1_A 362AA long hypothetical 100.0 2.2E-53 7.4E-58 423.1 19.9 217 187-418 3-227 (362)
35 1oxx_K GLCV, glucose, ABC tran 100.0 1.8E-53 6.3E-58 423.2 18.8 218 187-417 3-233 (353)
36 2yz2_A Putative ABC transporte 100.0 9.7E-53 3.3E-57 403.6 21.8 214 187-414 2-227 (266)
37 3d31_A Sulfate/molybdate ABC t 100.0 2.1E-53 7.3E-58 421.4 17.6 216 188-419 2-222 (348)
38 1g29_1 MALK, maltose transport 100.0 6.2E-53 2.1E-57 421.9 19.6 218 187-419 3-234 (372)
39 2onk_A Molybdate/tungstate ABC 100.0 9.7E-53 3.3E-57 397.4 19.2 210 188-415 2-217 (240)
40 2ihy_A ABC transporter, ATP-bi 100.0 7.7E-53 2.6E-57 406.6 18.2 216 187-415 21-253 (279)
41 2qi9_C Vitamin B12 import ATP- 100.0 1.2E-51 4.2E-56 391.8 22.0 209 187-414 4-222 (249)
42 2bbs_A Cystic fibrosis transme 100.0 1.3E-51 4.6E-56 399.7 21.9 209 185-414 38-247 (290)
43 2d2e_A SUFC protein; ABC-ATPas 100.0 1.1E-51 3.7E-56 392.9 18.1 212 187-410 3-229 (250)
44 2nq2_C Hypothetical ABC transp 100.0 1E-50 3.5E-55 386.6 19.8 203 187-415 4-218 (253)
45 2zu0_C Probable ATP-dependent 100.0 8.4E-51 2.9E-55 390.3 18.4 218 187-413 20-253 (267)
46 2pjz_A Hypothetical protein ST 100.0 5E-51 1.7E-55 390.5 16.2 208 188-414 2-215 (263)
47 1sgw_A Putative ABC transporte 100.0 9.4E-50 3.2E-54 370.4 11.8 197 186-403 9-210 (214)
48 1yqt_A RNAse L inhibitor; ATP- 100.0 3.1E-41 1.1E-45 353.4 13.4 201 187-414 287-493 (538)
49 3bk7_A ABC transporter ATP-bin 100.0 5.2E-41 1.8E-45 355.5 14.9 202 187-415 357-564 (607)
50 3ozx_A RNAse L inhibitor; ATP 100.0 2.9E-40 9.9E-45 345.4 17.0 201 186-412 268-475 (538)
51 2iw3_A Elongation factor 3A; a 100.0 6.9E-40 2.4E-44 358.6 15.7 200 187-408 671-981 (986)
52 3j16_B RLI1P; ribosome recycli 100.0 2E-39 7E-44 342.8 14.7 201 191-416 350-561 (608)
53 3bk7_A ABC transporter ATP-bin 100.0 2E-39 6.7E-44 343.4 10.2 197 187-401 83-304 (607)
54 3ux8_A Excinuclease ABC, A sub 100.0 7.8E-39 2.7E-43 344.3 14.3 207 202-417 31-301 (670)
55 1yqt_A RNAse L inhibitor; ATP- 100.0 2.4E-39 8.3E-44 339.0 8.7 193 191-401 25-234 (538)
56 2iw3_A Elongation factor 3A; a 100.0 5.2E-37 1.8E-41 336.0 24.7 196 186-413 434-634 (986)
57 2v9p_A Replication protein E1; 100.0 7.6E-42 2.6E-46 332.3 -19.4 225 121-412 38-264 (305)
58 3ux8_A Excinuclease ABC, A sub 100.0 4.4E-37 1.5E-41 330.7 12.8 201 202-416 335-642 (670)
59 3j16_B RLI1P; ribosome recycli 100.0 1.2E-36 3.9E-41 321.8 12.4 195 192-402 82-298 (608)
60 3ozx_A RNAse L inhibitor; ATP 100.0 3.5E-37 1.2E-41 322.1 6.8 193 191-402 3-214 (538)
61 3pih_A Uvrabc system protein A 100.0 8.6E-35 2.9E-39 318.1 17.9 202 203-417 598-905 (916)
62 4aby_A DNA repair protein RECN 100.0 7.4E-34 2.5E-38 288.6 16.9 203 203-406 49-380 (415)
63 2vf7_A UVRA2, excinuclease ABC 100.0 1.8E-33 6E-38 305.4 18.0 215 186-417 501-830 (842)
64 2r6f_A Excinuclease ABC subuni 100.0 2.3E-33 7.8E-38 305.1 15.7 210 187-416 629-944 (972)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 2E-37 6.8E-42 318.0 -16.8 192 187-413 118-337 (460)
66 2ygr_A Uvrabc system protein A 100.0 1.1E-32 3.7E-37 300.8 15.7 211 186-416 646-962 (993)
67 1e69_A Chromosome segregation 100.0 1.6E-30 5.6E-35 255.9 15.0 197 206-403 16-301 (322)
68 3b85_A Phosphate starvation-in 100.0 2.8E-32 9.7E-37 251.9 -6.0 158 203-403 14-172 (208)
69 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 4.6E-28 1.6E-32 242.2 15.9 84 322-405 274-364 (365)
70 4gp7_A Metallophosphoesterase; 99.9 7.8E-29 2.7E-33 221.8 5.8 149 207-395 1-168 (171)
71 2pt7_A CAG-ALFA; ATPase, prote 99.9 6.7E-32 2.3E-36 266.4 -16.8 205 122-402 75-291 (330)
72 1ye8_A Protein THEP1, hypothet 99.9 2E-28 6.8E-33 220.7 4.8 148 217-406 2-160 (178)
73 1z6g_A Guanylate kinase; struc 99.9 1.9E-30 6.3E-35 241.5 -12.6 175 203-396 11-205 (218)
74 1tq4_A IIGP1, interferon-induc 99.9 5.6E-29 1.9E-33 251.3 -7.0 172 203-401 37-254 (413)
75 2dpy_A FLII, flagellum-specifi 99.9 5E-29 1.7E-33 254.3 -9.6 195 186-414 130-344 (438)
76 1znw_A Guanylate kinase, GMP k 99.9 9.6E-28 3.3E-32 221.1 -6.2 170 202-399 9-202 (207)
77 3b9q_A Chloroplast SRP recepto 99.9 5.2E-27 1.8E-31 228.6 -2.6 175 205-403 90-284 (302)
78 3sop_A Neuronal-specific septi 99.9 8.6E-27 3E-31 223.6 -3.5 148 217-389 4-153 (270)
79 3aez_A Pantothenate kinase; tr 99.9 8.3E-28 2.9E-32 235.2 -12.5 204 156-402 15-246 (312)
80 2o5v_A DNA replication and rep 99.9 8E-24 2.7E-28 210.4 14.7 83 325-412 262-354 (359)
81 2og2_A Putative signal recogni 99.9 7.5E-26 2.6E-30 224.7 -1.7 174 206-403 148-341 (359)
82 2obl_A ESCN; ATPase, hydrolase 99.9 4.7E-25 1.6E-29 218.6 0.5 196 186-414 44-255 (347)
83 4ad8_A DNA repair protein RECN 99.9 4E-23 1.4E-27 215.7 11.7 78 325-402 394-474 (517)
84 2o8b_B DNA mismatch repair pro 99.9 2E-23 6.9E-28 231.9 9.0 171 186-410 749-938 (1022)
85 1tf7_A KAIC; homohexamer, hexa 99.9 3.7E-25 1.3E-29 231.4 -5.7 175 191-400 16-209 (525)
86 3qkt_A DNA double-strand break 99.9 1E-21 3.6E-26 194.3 16.0 77 323-399 244-327 (339)
87 2i3b_A HCR-ntpase, human cance 99.9 1.8E-24 6.3E-29 196.6 -5.3 159 215-407 1-169 (189)
88 3pih_A Uvrabc system protein A 99.9 5.1E-23 1.8E-27 225.2 4.9 164 231-416 384-562 (916)
89 2eyu_A Twitching motility prot 99.9 3.1E-23 1.1E-27 197.8 2.5 132 203-400 15-147 (261)
90 1cr0_A DNA primase/helicase; R 99.9 1.2E-22 4.2E-27 196.9 6.6 181 203-403 23-237 (296)
91 2vf7_A UVRA2, excinuclease ABC 99.9 1.4E-22 4.8E-27 220.1 5.8 181 223-416 270-477 (842)
92 2r6f_A Excinuclease ABC subuni 99.8 1.3E-21 4.5E-26 213.0 10.0 101 316-416 492-602 (972)
93 3thx_A DNA mismatch repair pro 99.8 2.5E-21 8.5E-26 212.8 12.2 167 186-413 630-812 (934)
94 1tf7_A KAIC; homohexamer, hexa 99.8 1.9E-21 6.4E-26 203.4 10.3 153 209-402 275-444 (525)
95 1w1w_A Structural maintenance 99.8 5.6E-21 1.9E-25 195.0 13.3 74 326-399 332-410 (430)
96 1ewq_A DNA mismatch repair pro 99.8 1E-21 3.4E-26 212.3 7.9 146 185-392 548-704 (765)
97 2f1r_A Molybdopterin-guanine d 99.8 8.1E-24 2.8E-28 189.2 -7.1 135 216-373 3-159 (171)
98 2ehv_A Hypothetical protein PH 99.8 2.4E-22 8.4E-27 188.8 0.2 180 188-399 7-206 (251)
99 2jeo_A Uridine-cytidine kinase 99.8 4.8E-22 1.6E-26 187.7 0.5 161 202-402 12-180 (245)
100 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 2E-20 6.9E-25 163.1 9.3 81 322-402 52-141 (148)
101 4a74_A DNA repair and recombin 99.8 2.4E-21 8.3E-26 179.7 3.5 152 211-401 21-200 (231)
102 2ygr_A Uvrabc system protein A 99.8 6.3E-20 2.2E-24 200.6 13.3 137 274-416 466-619 (993)
103 2ewv_A Twitching motility prot 99.8 2.4E-23 8.3E-28 208.4 -13.0 177 203-387 126-352 (372)
104 3asz_A Uridine kinase; cytidin 99.8 7.8E-23 2.7E-27 188.1 -9.5 142 212-386 3-161 (211)
105 2gza_A Type IV secretion syste 99.8 1.6E-23 5.5E-28 209.0 -15.4 225 112-401 53-302 (361)
106 1lvg_A Guanylate kinase, GMP k 99.8 1.8E-23 6.3E-28 191.3 -14.9 159 212-400 1-173 (198)
107 1pzn_A RAD51, DNA repair and r 99.8 8.6E-21 2.9E-25 188.4 2.9 163 204-410 119-311 (349)
108 1lw7_A Transcriptional regulat 99.8 2.6E-23 8.8E-28 207.9 -15.5 177 204-414 157-355 (365)
109 2qnr_A Septin-2, protein NEDD5 99.8 2.3E-21 8E-26 188.7 -1.6 162 191-387 2-168 (301)
110 3szr_A Interferon-induced GTP- 99.8 1.4E-21 4.8E-26 207.4 -4.2 187 187-410 10-233 (608)
111 3thx_B DNA mismatch repair pro 99.8 4.2E-19 1.4E-23 194.6 13.8 158 187-395 640-805 (918)
112 3jvv_A Twitching mobility prot 99.8 2.7E-20 9.3E-25 184.9 4.0 147 191-401 92-246 (356)
113 1pui_A ENGB, probable GTP-bind 99.8 1.5E-21 5.2E-26 178.6 -5.2 168 188-374 4-197 (210)
114 1rj9_A FTSY, signal recognitio 99.8 2.1E-20 7.2E-25 182.0 1.4 149 214-388 101-260 (304)
115 2qag_C Septin-7; cell cycle, c 99.8 3.3E-20 1.1E-24 187.8 -0.2 165 186-388 10-179 (418)
116 2w0m_A SSO2452; RECA, SSPF, un 99.8 9.3E-20 3.2E-24 168.9 2.1 164 203-401 10-192 (235)
117 1wb9_A DNA mismatch repair pro 99.7 3.3E-19 1.1E-23 193.7 5.1 165 186-406 576-750 (800)
118 1s96_A Guanylate kinase, GMP k 99.7 1.2E-19 4.1E-24 168.6 0.8 142 210-413 11-159 (219)
119 3kta_B Chromosome segregation 99.7 5E-18 1.7E-22 151.7 11.1 80 324-403 61-146 (173)
120 2qag_B Septin-6, protein NEDD5 99.7 1.5E-18 5.2E-23 175.1 3.5 180 187-385 16-218 (427)
121 1odf_A YGR205W, hypothetical 3 99.7 1.9E-19 6.5E-24 174.1 -7.1 131 214-362 30-169 (290)
122 1nlf_A Regulatory protein REPA 99.7 2E-17 7E-22 158.8 6.9 151 211-389 26-184 (279)
123 1zp6_A Hypothetical protein AT 99.7 4.5E-19 1.5E-23 160.0 -5.1 152 211-385 5-159 (191)
124 1nij_A Hypothetical protein YJ 99.7 8.4E-19 2.9E-23 171.9 -3.9 143 216-387 5-190 (318)
125 2cvh_A DNA repair and recombin 99.7 3.3E-16 1.1E-20 144.0 11.0 150 204-401 8-185 (220)
126 2qm8_A GTPase/ATPase; G protei 99.6 3.8E-19 1.3E-23 175.7 -13.5 181 188-374 30-259 (337)
127 1n0w_A DNA repair protein RAD5 99.6 5.2E-16 1.8E-20 144.8 8.2 146 211-401 20-209 (243)
128 2bdt_A BH3686; alpha-beta prot 99.6 1E-18 3.5E-23 157.8 -10.4 168 215-415 2-185 (189)
129 3c8u_A Fructokinase; YP_612366 99.6 1.1E-18 3.9E-23 160.3 -11.1 116 212-355 19-140 (208)
130 2bbw_A Adenylate kinase 4, AK4 99.6 2.1E-17 7.3E-22 155.7 -4.5 150 214-374 26-197 (246)
131 2yhs_A FTSY, cell division pro 99.6 9.7E-16 3.3E-20 156.7 5.2 154 205-384 283-447 (503)
132 3auy_A DNA double-strand break 99.5 8.3E-15 2.8E-19 146.4 9.5 75 325-399 278-359 (371)
133 1htw_A HI0065; nucleotide-bind 99.5 1.4E-16 4.8E-21 140.3 -3.2 87 191-285 11-97 (158)
134 1p9r_A General secretion pathw 99.5 6.3E-18 2.2E-22 171.2 -14.9 130 204-350 158-314 (418)
135 3e70_C DPA, signal recognition 99.5 2.1E-15 7.1E-20 148.1 2.5 163 212-404 126-307 (328)
136 1sxj_E Activator 1 40 kDa subu 99.5 1.1E-14 3.7E-19 143.8 7.3 137 217-388 38-176 (354)
137 3lda_A DNA repair protein RAD5 99.5 2E-14 6.7E-19 144.7 7.9 147 211-402 174-364 (400)
138 2rcn_A Probable GTPase ENGC; Y 99.5 1.6E-14 5.6E-19 142.9 7.1 121 204-342 205-328 (358)
139 2oap_1 GSPE-2, type II secreti 99.5 6.1E-17 2.1E-21 168.0 -10.9 176 203-393 248-458 (511)
140 2x8a_A Nuclear valosin-contain 99.5 7.4E-17 2.5E-21 154.8 -12.2 144 203-371 34-191 (274)
141 2yv5_A YJEQ protein; hydrolase 99.5 7.9E-15 2.7E-19 142.6 1.7 116 211-340 161-300 (302)
142 2kjq_A DNAA-related protein; s 99.5 5.6E-14 1.9E-18 122.3 6.6 91 204-385 30-124 (149)
143 3ec2_A DNA replication protein 99.5 5.6E-14 1.9E-18 125.6 6.5 110 209-386 32-143 (180)
144 1sq5_A Pantothenate kinase; P- 99.4 1.9E-15 6.3E-20 147.4 -8.8 91 186-285 36-151 (308)
145 1udx_A The GTP-binding protein 99.4 4.8E-14 1.7E-18 142.5 0.3 155 205-384 147-306 (416)
146 1u0l_A Probable GTPase ENGC; p 99.4 1.1E-13 3.9E-18 134.3 2.6 104 210-314 164-289 (301)
147 3lnc_A Guanylate kinase, GMP k 99.3 4.4E-14 1.5E-18 131.5 -6.9 181 203-403 15-213 (231)
148 3euj_A Chromosome partition pr 99.3 2.5E-12 8.5E-17 131.8 4.7 64 189-257 8-71 (483)
149 1vma_A Cell division protein F 99.2 2.2E-12 7.4E-17 125.4 3.1 98 208-356 97-197 (306)
150 2px0_A Flagellar biosynthesis 99.2 1.7E-11 5.8E-16 118.6 9.1 138 213-405 103-246 (296)
151 1ls1_A Signal recognition part 99.2 1.9E-11 6.4E-16 118.3 9.2 142 188-383 77-219 (295)
152 1t9h_A YLOQ, probable GTPase E 99.2 7E-13 2.4E-17 128.7 -1.6 111 210-335 168-303 (307)
153 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 2.3E-14 7.9E-19 143.6 -13.1 168 211-409 16-208 (392)
154 3tr0_A Guanylate kinase, GMP k 99.2 2.2E-12 7.6E-17 117.1 1.2 72 209-284 1-73 (205)
155 1in4_A RUVB, holliday junction 99.2 1.5E-15 5.2E-20 149.7 -21.6 172 188-389 19-205 (334)
156 1iy2_A ATP-dependent metallopr 99.1 7.1E-14 2.4E-18 133.9 -13.6 139 189-355 51-195 (278)
157 1oix_A RAS-related protein RAB 99.1 7E-12 2.4E-16 112.9 -0.0 142 217-372 31-188 (191)
158 1qhl_A Protein (cell division 99.1 1.7E-12 5.9E-17 120.7 -4.5 75 187-271 9-91 (227)
159 1cke_A CK, MSSA, protein (cyti 99.1 9.4E-13 3.2E-17 121.6 -6.3 129 214-356 4-151 (227)
160 2dr3_A UPF0273 protein PH0284; 99.1 5.1E-11 1.8E-15 110.9 5.0 166 204-400 11-196 (247)
161 1ixz_A ATP-dependent metallopr 99.1 1.1E-13 3.7E-18 130.6 -13.8 155 188-370 26-198 (254)
162 3a00_A Guanylate kinase, GMP k 99.0 4.1E-11 1.4E-15 107.6 1.8 26 215-240 1-26 (186)
163 2zr9_A Protein RECA, recombina 99.0 5.9E-10 2E-14 110.2 10.0 142 211-407 57-236 (349)
164 4e22_A Cytidylate kinase; P-lo 99.0 2.2E-11 7.6E-16 115.0 -0.4 72 213-284 25-114 (252)
165 3k1j_A LON protease, ATP-depen 99.0 1.8E-11 6.1E-16 129.9 -1.9 157 202-372 47-227 (604)
166 2ius_A DNA translocase FTSK; n 99.0 6.2E-11 2.1E-15 122.3 0.3 162 206-387 158-343 (512)
167 2r6a_A DNAB helicase, replicat 98.9 9E-11 3.1E-15 120.2 0.5 177 203-403 191-401 (454)
168 2f9l_A RAB11B, member RAS onco 98.8 8.5E-10 2.9E-14 99.6 2.7 36 336-373 130-165 (199)
169 1svm_A Large T antigen; AAA+ f 98.8 1.7E-11 5.7E-16 122.4 -9.5 139 203-356 157-312 (377)
170 2dy1_A Elongation factor G; tr 98.8 1.2E-09 4E-14 117.1 3.9 134 209-388 3-138 (665)
171 3ney_A 55 kDa erythrocyte memb 98.8 5.7E-10 2E-14 101.3 1.2 83 209-302 13-108 (197)
172 4eun_A Thermoresistant glucoki 98.7 1.3E-09 4.4E-14 98.9 -0.1 70 209-283 23-93 (200)
173 1kgd_A CASK, peripheral plasma 98.7 1E-09 3.6E-14 97.9 -0.7 66 214-282 4-80 (180)
174 2ce7_A Cell division protein F 98.7 1.5E-08 5E-13 104.0 6.7 113 204-389 40-167 (476)
175 3nwj_A ATSK2; P loop, shikimat 98.7 1.3E-09 4.5E-14 102.7 -1.6 52 187-239 17-72 (250)
176 2j41_A Guanylate kinase; GMP, 98.7 6E-09 2E-13 94.3 2.8 63 210-275 1-63 (207)
177 2qtf_A Protein HFLX, GTP-bindi 98.6 1.4E-08 4.9E-13 100.9 4.9 143 217-373 181-351 (364)
178 2dhr_A FTSH; AAA+ protein, hex 98.6 9.2E-10 3.1E-14 113.6 -4.1 141 189-357 42-188 (499)
179 3cr8_A Sulfate adenylyltranfer 98.6 2E-09 6.7E-14 112.5 -1.7 70 211-285 365-446 (552)
180 1zu4_A FTSY; GTPase, signal re 98.6 5.9E-09 2E-13 101.8 1.8 70 205-274 95-174 (320)
181 3uie_A Adenylyl-sulfate kinase 98.6 6.4E-10 2.2E-14 100.9 -5.0 61 191-254 3-65 (200)
182 2qt1_A Nicotinamide riboside k 98.6 7.1E-09 2.4E-13 94.3 1.5 49 211-285 17-65 (207)
183 3hr8_A Protein RECA; alpha and 98.6 1.6E-08 5.5E-13 99.9 3.5 59 211-272 57-116 (356)
184 3kta_A Chromosome segregation 98.6 9.1E-09 3.1E-13 91.4 0.9 67 206-273 18-90 (182)
185 3t34_A Dynamin-related protein 98.5 8.8E-08 3E-12 94.9 7.3 45 203-250 25-71 (360)
186 2xau_A PRE-mRNA-splicing facto 98.5 5E-08 1.7E-12 106.1 5.8 69 325-393 188-260 (773)
187 1jjv_A Dephospho-COA kinase; P 98.4 1.3E-07 4.4E-12 85.7 4.3 70 328-400 60-132 (206)
188 2e87_A Hypothetical protein PH 98.4 6.9E-07 2.4E-11 88.3 9.8 62 325-387 229-293 (357)
189 3vaa_A Shikimate kinase, SK; s 98.4 1.4E-07 4.7E-12 85.3 3.6 38 202-239 12-49 (199)
190 3tau_A Guanylate kinase, GMP k 98.4 5.3E-08 1.8E-12 88.8 0.4 34 213-246 6-40 (208)
191 4a1f_A DNAB helicase, replicat 98.3 3E-06 1E-10 83.0 12.0 106 204-358 35-140 (338)
192 1knq_A Gluconate kinase; ALFA/ 98.3 8.1E-08 2.8E-12 84.7 -0.1 38 213-254 6-43 (175)
193 1rz3_A Hypothetical protein rb 98.3 1.9E-07 6.3E-12 84.7 1.5 46 212-257 19-64 (201)
194 2ffh_A Protein (FFH); SRP54, s 98.2 1.2E-06 4E-11 88.5 7.0 161 191-384 80-246 (425)
195 2vp4_A Deoxynucleoside kinase; 98.2 3.3E-07 1.1E-11 84.8 2.4 63 210-276 15-87 (230)
196 1fnn_A CDC6P, cell division co 98.2 6E-06 2.1E-10 81.5 11.4 45 344-389 124-172 (389)
197 3kl4_A SRP54, signal recogniti 98.2 1.7E-06 5.8E-11 87.5 7.3 40 214-253 96-135 (433)
198 3ice_A Transcription terminati 98.2 2.3E-07 7.8E-12 91.8 0.1 54 185-239 131-198 (422)
199 3tqc_A Pantothenate kinase; bi 98.1 3.7E-07 1.3E-11 88.9 -0.3 43 204-246 75-125 (321)
200 2z43_A DNA repair and recombin 98.1 1.4E-06 4.7E-11 85.0 3.2 28 211-238 103-130 (324)
201 3b9p_A CG5977-PA, isoform A; A 98.0 6.9E-05 2.4E-09 71.4 13.9 71 329-399 97-187 (297)
202 1v5w_A DMC1, meiotic recombina 98.0 3.7E-06 1.3E-10 82.6 4.7 28 211-238 118-145 (343)
203 3m6a_A ATP-dependent protease 97.9 1.2E-06 4E-11 91.6 -0.1 80 190-272 86-165 (543)
204 2z4s_A Chromosomal replication 97.9 1.3E-05 4.5E-10 81.5 7.5 67 344-410 193-264 (440)
205 1sxj_C Activator 1 40 kDa subu 97.9 1.4E-06 4.9E-11 85.2 0.1 42 203-244 32-75 (340)
206 3lxx_A GTPase IMAP family memb 97.9 7.1E-05 2.4E-09 69.1 11.4 29 217-245 31-59 (239)
207 1mky_A Probable GTP-binding pr 97.9 7.1E-06 2.4E-10 83.3 4.8 68 217-284 182-262 (439)
208 2pez_A Bifunctional 3'-phospho 97.9 2.3E-06 8E-11 75.6 0.9 40 213-253 3-44 (179)
209 3bh0_A DNAB-like replicative h 97.9 4.7E-05 1.6E-09 73.8 9.9 34 204-237 57-90 (315)
210 1kag_A SKI, shikimate kinase I 97.9 6E-06 2E-10 72.2 3.0 33 214-250 3-35 (173)
211 2p67_A LAO/AO transport system 97.8 1.5E-06 5.2E-11 85.4 -1.2 52 203-254 44-95 (341)
212 1ypw_A Transitional endoplasmi 97.8 1.8E-06 6.3E-11 94.2 -0.8 32 210-241 233-264 (806)
213 2qby_A CDC6 homolog 1, cell di 97.8 5.8E-06 2E-10 81.3 2.2 30 213-242 43-72 (386)
214 4eaq_A DTMP kinase, thymidylat 97.8 5.9E-06 2E-10 76.5 1.7 44 205-249 13-59 (229)
215 1ega_A Protein (GTP-binding pr 97.8 1.2E-05 4E-10 77.6 3.7 142 214-389 7-162 (301)
216 2www_A Methylmalonic aciduria 97.7 6.7E-06 2.3E-10 81.0 1.6 42 213-254 72-113 (349)
217 1m7g_A Adenylylsulfate kinase; 97.7 3.6E-06 1.2E-10 76.6 -0.4 43 210-252 20-64 (211)
218 1f2t_A RAD50 ABC-ATPase; DNA d 97.7 2E-05 6.8E-10 67.9 3.9 30 206-236 15-44 (149)
219 3llm_A ATP-dependent RNA helic 97.7 2.9E-05 9.8E-10 71.8 4.9 144 212-389 73-223 (235)
220 1f6b_A SAR1; gtpases, N-termin 97.7 8.1E-06 2.8E-10 73.2 0.9 57 194-252 6-70 (198)
221 1l8q_A Chromosomal replication 97.6 7.8E-05 2.7E-09 72.1 6.9 28 214-241 36-63 (324)
222 2qor_A Guanylate kinase; phosp 97.6 8.4E-06 2.9E-10 73.7 0.0 30 211-240 8-37 (204)
223 4fcw_A Chaperone protein CLPB; 97.6 4.6E-05 1.6E-09 73.0 4.9 31 216-246 48-78 (311)
224 1m2o_B GTP-binding protein SAR 97.6 4.5E-05 1.5E-09 67.8 4.5 47 204-251 13-67 (190)
225 2w58_A DNAI, primosome compone 97.6 8E-05 2.7E-09 66.7 6.1 26 216-241 55-80 (202)
226 2gj8_A MNME, tRNA modification 97.6 4.7E-05 1.6E-09 66.6 4.3 27 213-239 2-28 (172)
227 3r20_A Cytidylate kinase; stru 97.5 6.9E-06 2.4E-10 76.2 -1.7 70 214-283 8-95 (233)
228 3cf0_A Transitional endoplasmi 97.5 0.00012 4E-09 70.4 6.8 30 210-239 44-73 (301)
229 1sxj_D Activator 1 41 kDa subu 97.5 1.6E-05 5.5E-10 77.5 0.5 43 345-388 133-175 (353)
230 3h4m_A Proteasome-activating n 97.5 0.0002 7E-09 67.6 7.9 28 212-239 48-75 (285)
231 1j8m_F SRP54, signal recogniti 97.5 1.4E-05 4.7E-10 77.0 -0.6 47 208-255 92-138 (297)
232 3bos_A Putative DNA replicatio 97.4 4.8E-05 1.6E-09 69.5 2.7 27 214-240 51-77 (242)
233 1u94_A RECA protein, recombina 97.4 0.00065 2.2E-08 66.9 10.8 28 212-239 60-87 (356)
234 1y63_A LMAJ004144AAA protein; 97.4 6.4E-05 2.2E-09 66.7 3.2 32 207-238 2-33 (184)
235 2yvu_A Probable adenylyl-sulfa 97.4 5E-05 1.7E-09 67.3 2.0 39 212-250 10-49 (186)
236 3qks_A DNA double-strand break 97.4 0.00011 3.6E-09 66.6 3.9 30 206-236 15-44 (203)
237 1njg_A DNA polymerase III subu 97.3 0.00025 8.5E-09 64.1 5.8 45 344-389 125-169 (250)
238 2eyu_A Twitching motility prot 97.3 1.1E-07 3.8E-12 90.1 -17.4 73 313-387 158-241 (261)
239 2wji_A Ferrous iron transport 97.3 0.00023 8E-09 61.4 5.3 24 217-240 5-28 (165)
240 2qag_A Septin-2, protein NEDD5 97.3 1.8E-05 6.2E-10 78.3 -2.2 58 185-250 15-72 (361)
241 2ohf_A Protein OLA1, GTP-bindi 97.3 0.00013 4.3E-09 72.9 3.7 41 211-251 18-69 (396)
242 2wjg_A FEOB, ferrous iron tran 97.3 0.00016 5.5E-09 63.4 3.9 22 217-238 9-30 (188)
243 3n70_A Transport activator; si 97.3 0.001 3.5E-08 56.4 8.8 40 345-385 76-115 (145)
244 3t61_A Gluconokinase; PSI-biol 97.2 7.7E-05 2.6E-09 66.9 1.3 34 215-252 18-51 (202)
245 2if2_A Dephospho-COA kinase; a 97.2 0.00016 5.3E-09 64.9 3.0 21 217-237 3-23 (204)
246 2ewv_A Twitching motility prot 97.2 0.00014 4.9E-09 72.1 2.8 58 335-398 199-256 (372)
247 1np6_A Molybdopterin-guanine d 97.2 0.00015 5.2E-09 64.1 2.7 38 215-252 6-46 (174)
248 2p5t_B PEZT; postsegregational 97.1 9.1E-05 3.1E-09 69.3 0.6 41 211-253 28-68 (253)
249 2zej_A Dardarin, leucine-rich 97.1 0.00025 8.5E-09 62.4 3.4 26 217-242 4-29 (184)
250 1lv7_A FTSH; alpha/beta domain 97.1 0.00022 7.6E-09 66.4 3.2 45 204-252 36-80 (257)
251 4dcu_A GTP-binding protein ENG 97.0 0.00047 1.6E-08 70.2 4.7 56 331-389 88-144 (456)
252 3cm0_A Adenylate kinase; ATP-b 97.0 0.0003 1E-08 61.8 2.9 27 213-239 2-28 (186)
253 4ag6_A VIRB4 ATPase, type IV s 97.0 0.00027 9.2E-09 70.4 2.7 58 344-401 261-335 (392)
254 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.0036 1.2E-07 57.9 10.1 26 214-239 38-63 (262)
255 3lxw_A GTPase IMAP family memb 97.0 0.0013 4.5E-08 61.1 7.1 23 217-239 23-45 (247)
256 2ga8_A Hypothetical 39.9 kDa p 96.9 0.0001 3.6E-09 72.3 -0.6 37 203-239 10-48 (359)
257 1qhx_A CPT, protein (chloramph 96.9 0.00055 1.9E-08 59.7 3.8 26 215-240 3-28 (178)
258 1q3t_A Cytidylate kinase; nucl 96.9 0.0005 1.7E-08 63.3 3.6 35 212-246 13-50 (236)
259 3auy_A DNA double-strand break 96.9 0.00054 1.8E-08 67.8 3.9 31 205-236 16-46 (371)
260 3syl_A Protein CBBX; photosynt 96.8 0.0095 3.2E-07 56.6 12.3 26 214-239 66-91 (309)
261 3ihw_A Centg3; RAS, centaurin, 96.8 0.0012 4.2E-08 58.0 5.5 36 217-252 22-66 (184)
262 3kb2_A SPBC2 prophage-derived 96.8 0.0006 2.1E-08 58.9 3.4 23 217-239 3-25 (173)
263 3d8b_A Fidgetin-like protein 1 96.8 0.004 1.4E-07 61.1 9.7 27 213-239 115-141 (357)
264 2v1u_A Cell division control p 96.8 0.0014 4.9E-08 64.0 6.4 28 213-240 42-69 (387)
265 2jaq_A Deoxyguanosine kinase; 96.8 0.00063 2.1E-08 60.5 3.3 23 217-239 2-24 (205)
266 3uk6_A RUVB-like 2; hexameric 96.8 0.0041 1.4E-07 60.7 9.4 38 213-250 68-105 (368)
267 1uf9_A TT1252 protein; P-loop, 96.8 0.0006 2E-08 60.7 3.0 31 215-250 8-38 (203)
268 1gtv_A TMK, thymidylate kinase 96.8 0.0002 6.8E-09 64.5 -0.2 26 217-242 2-27 (214)
269 1kht_A Adenylate kinase; phosp 96.7 0.0008 2.7E-08 59.1 3.6 26 214-239 2-27 (192)
270 2q6t_A DNAB replication FORK h 96.7 0.0018 6.2E-08 65.6 6.7 157 204-383 189-358 (444)
271 2b8t_A Thymidine kinase; deoxy 96.7 0.0021 7.2E-08 59.0 6.4 51 345-399 89-150 (223)
272 3dm5_A SRP54, signal recogniti 96.7 0.0066 2.2E-07 61.3 10.5 35 214-248 99-133 (443)
273 2chg_A Replication factor C sm 96.7 0.0036 1.2E-07 55.6 7.6 43 344-387 101-143 (226)
274 1vht_A Dephospho-COA kinase; s 96.7 0.00087 3E-08 60.7 3.4 24 214-237 3-26 (218)
275 1jal_A YCHF protein; nucleotid 96.7 0.0014 4.8E-08 64.6 4.9 36 215-250 2-48 (363)
276 3lw7_A Adenylate kinase relate 96.6 0.00094 3.2E-08 57.5 3.3 19 217-235 3-21 (179)
277 2rhm_A Putative kinase; P-loop 96.6 0.00079 2.7E-08 59.4 2.8 27 213-239 3-29 (193)
278 3trf_A Shikimate kinase, SK; a 96.6 0.001 3.6E-08 58.3 3.6 26 214-239 4-29 (185)
279 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.018 6.2E-07 55.6 12.7 27 213-239 43-69 (322)
280 2v54_A DTMP kinase, thymidylat 96.6 0.0012 4.1E-08 58.8 3.9 27 213-239 2-28 (204)
281 1fzq_A ADP-ribosylation factor 96.6 0.00098 3.3E-08 58.4 3.1 23 216-238 17-39 (181)
282 1gvn_B Zeta; postsegregational 96.6 0.0011 3.7E-08 63.3 3.5 35 214-250 32-66 (287)
283 1ex7_A Guanylate kinase; subst 96.6 0.00093 3.2E-08 59.6 2.8 42 218-261 4-58 (186)
284 1ko7_A HPR kinase/phosphatase; 96.5 0.0011 3.8E-08 63.9 3.2 47 203-250 133-183 (314)
285 3iij_A Coilin-interacting nucl 96.5 0.0012 4.3E-08 57.7 3.1 27 213-239 9-35 (180)
286 2ze6_A Isopentenyl transferase 96.5 0.0012 4.2E-08 61.6 3.0 23 217-239 3-25 (253)
287 3bgw_A DNAB-like replicative h 96.5 0.0098 3.4E-07 60.2 9.9 34 204-237 186-219 (444)
288 2c95_A Adenylate kinase 1; tra 96.5 0.0014 4.8E-08 57.8 3.2 27 213-239 7-33 (196)
289 1via_A Shikimate kinase; struc 96.4 0.0012 4.2E-08 57.5 2.7 23 217-239 6-28 (175)
290 2wwf_A Thymidilate kinase, put 96.4 0.0015 5.3E-08 58.4 3.4 27 213-239 8-34 (212)
291 2plr_A DTMP kinase, probable t 96.4 0.0016 5.5E-08 58.1 3.4 28 214-241 3-30 (213)
292 1ly1_A Polynucleotide kinase; 96.4 0.0017 5.8E-08 56.4 3.4 22 216-237 3-24 (181)
293 1nn5_A Similar to deoxythymidy 96.4 0.0017 5.7E-08 58.3 3.4 28 212-239 6-33 (215)
294 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0037 1.3E-07 60.5 5.6 27 211-237 119-145 (331)
295 3zvl_A Bifunctional polynucleo 96.3 0.016 5.5E-07 58.0 10.4 28 212-239 255-282 (416)
296 1xjc_A MOBB protein homolog; s 96.3 0.0013 4.6E-08 57.6 2.1 26 216-241 5-30 (169)
297 1tev_A UMP-CMP kinase; ploop, 96.3 0.002 6.9E-08 56.6 3.3 25 215-239 3-27 (196)
298 2vli_A Antibiotic resistance p 96.3 0.0017 5.7E-08 56.8 2.4 27 213-239 3-29 (183)
299 1nks_A Adenylate kinase; therm 96.2 0.0022 7.5E-08 56.3 3.1 24 217-240 3-26 (194)
300 2bwj_A Adenylate kinase 5; pho 96.2 0.0018 6.2E-08 57.3 2.5 28 212-239 9-36 (199)
301 3k53_A Ferrous iron transport 96.2 0.0022 7.6E-08 60.3 3.1 42 354-395 144-188 (271)
302 3ake_A Cytidylate kinase; CMP 96.2 0.0025 8.6E-08 56.8 3.2 23 217-239 4-26 (208)
303 1aky_A Adenylate kinase; ATP:A 96.2 0.0031 1E-07 57.2 3.8 27 213-239 2-28 (220)
304 2z0h_A DTMP kinase, thymidylat 96.2 0.0027 9.3E-08 56.0 3.3 23 217-239 2-24 (197)
305 3cbq_A GTP-binding protein REM 96.1 0.0028 9.5E-08 56.3 3.1 22 217-238 25-46 (195)
306 2erx_A GTP-binding protein DI- 96.1 0.0056 1.9E-07 52.0 5.0 21 217-237 5-25 (172)
307 2cdn_A Adenylate kinase; phosp 96.1 0.0037 1.3E-07 55.7 3.8 26 214-239 19-44 (201)
308 1zd8_A GTP:AMP phosphotransfer 96.1 0.0032 1.1E-07 57.4 3.3 27 213-239 5-31 (227)
309 2ged_A SR-beta, signal recogni 96.0 0.0033 1.1E-07 55.2 3.2 24 216-239 49-72 (193)
310 1jr3_A DNA polymerase III subu 96.0 0.012 4.2E-07 57.2 7.7 43 345-388 119-161 (373)
311 3fb4_A Adenylate kinase; psych 96.0 0.0033 1.1E-07 56.6 3.3 23 217-239 2-24 (216)
312 1zuh_A Shikimate kinase; alpha 96.0 0.0038 1.3E-07 53.9 3.5 24 216-239 8-31 (168)
313 1z2a_A RAS-related protein RAB 96.0 0.0034 1.2E-07 53.3 3.2 22 217-238 7-28 (168)
314 3q72_A GTP-binding protein RAD 96.0 0.0031 1.1E-07 53.6 2.7 23 217-239 4-26 (166)
315 2nzj_A GTP-binding protein REM 96.0 0.004 1.4E-07 53.3 3.4 23 217-239 6-28 (175)
316 2pt5_A Shikimate kinase, SK; a 96.0 0.004 1.4E-07 53.5 3.4 23 217-239 2-24 (168)
317 1e6c_A Shikimate kinase; phosp 96.0 0.0034 1.2E-07 54.2 2.9 24 216-239 3-26 (173)
318 3cmw_A Protein RECA, recombina 96.0 0.035 1.2E-06 64.5 12.0 35 212-246 729-763 (1706)
319 2pbr_A DTMP kinase, thymidylat 95.9 0.0039 1.3E-07 54.7 3.3 23 217-239 2-24 (195)
320 2iyv_A Shikimate kinase, SK; t 95.9 0.0033 1.1E-07 55.1 2.8 24 216-239 3-26 (184)
321 2dyk_A GTP-binding protein; GT 95.9 0.004 1.4E-07 52.5 3.2 23 217-239 3-25 (161)
322 1kao_A RAP2A; GTP-binding prot 95.9 0.0041 1.4E-07 52.6 3.2 22 217-238 5-26 (167)
323 3q85_A GTP-binding protein REM 95.9 0.0042 1.4E-07 52.9 3.4 23 217-239 4-26 (169)
324 1zak_A Adenylate kinase; ATP:A 95.9 0.0033 1.1E-07 57.0 2.8 26 214-239 4-29 (222)
325 3dl0_A Adenylate kinase; phosp 95.9 0.004 1.4E-07 56.1 3.3 23 217-239 2-24 (216)
326 3pxi_A Negative regulator of g 95.9 0.018 6.1E-07 62.2 9.0 23 217-239 523-545 (758)
327 3iby_A Ferrous iron transport 95.9 0.0043 1.5E-07 58.0 3.6 23 217-239 3-25 (256)
328 2ce2_X GTPase HRAS; signaling 95.9 0.0037 1.3E-07 52.6 2.9 22 217-238 5-26 (166)
329 1ukz_A Uridylate kinase; trans 95.9 0.0039 1.3E-07 55.5 3.1 25 215-239 15-39 (203)
330 3b1v_A Ferrous iron uptake tra 95.9 0.0041 1.4E-07 58.7 3.4 23 217-239 5-27 (272)
331 1u8z_A RAS-related protein RAL 95.9 0.0043 1.5E-07 52.5 3.2 22 217-238 6-27 (168)
332 2grj_A Dephospho-COA kinase; T 95.9 0.0044 1.5E-07 55.4 3.3 23 216-238 13-35 (192)
333 2lkc_A Translation initiation 95.9 0.0053 1.8E-07 52.8 3.8 25 214-238 7-31 (178)
334 1z08_A RAS-related protein RAB 95.9 0.0045 1.5E-07 52.7 3.3 22 217-238 8-29 (170)
335 1z0j_A RAB-22, RAS-related pro 95.9 0.0045 1.5E-07 52.6 3.2 23 217-239 8-30 (170)
336 2dby_A GTP-binding protein; GD 95.8 0.0041 1.4E-07 61.4 3.3 22 217-238 3-24 (368)
337 3co5_A Putative two-component 95.8 0.013 4.5E-07 49.3 6.1 40 345-385 75-115 (143)
338 1c1y_A RAS-related protein RAP 95.8 0.0046 1.6E-07 52.4 3.2 22 217-238 5-26 (167)
339 1a7j_A Phosphoribulokinase; tr 95.8 0.0023 8E-08 61.1 1.4 26 214-239 4-29 (290)
340 1ky3_A GTP-binding protein YPT 95.8 0.0046 1.6E-07 53.2 3.2 23 217-239 10-32 (182)
341 1ek0_A Protein (GTP-binding pr 95.8 0.0047 1.6E-07 52.4 3.2 23 217-239 5-27 (170)
342 3tw8_B RAS-related protein RAB 95.8 0.0045 1.5E-07 53.2 3.1 22 217-238 11-32 (181)
343 1qf9_A UMP/CMP kinase, protein 95.8 0.0044 1.5E-07 54.3 3.0 25 215-239 6-30 (194)
344 1g16_A RAS-related protein SEC 95.8 0.0044 1.5E-07 52.7 2.9 23 217-239 5-27 (170)
345 1wms_A RAB-9, RAB9, RAS-relate 95.8 0.0049 1.7E-07 53.0 3.2 22 217-238 9-30 (177)
346 3a4m_A L-seryl-tRNA(SEC) kinas 95.8 0.0047 1.6E-07 57.7 3.4 26 213-238 2-27 (260)
347 3t1o_A Gliding protein MGLA; G 95.8 0.0051 1.7E-07 53.7 3.4 25 217-241 16-40 (198)
348 1uj2_A Uridine-cytidine kinase 95.8 0.0047 1.6E-07 57.3 3.3 24 216-239 23-46 (252)
349 1svi_A GTP-binding protein YSX 95.8 0.0044 1.5E-07 54.3 2.9 24 215-238 23-46 (195)
350 2fn4_A P23, RAS-related protei 95.7 0.0047 1.6E-07 53.1 3.0 22 217-238 11-32 (181)
351 2ew1_A RAS-related protein RAB 95.7 0.0097 3.3E-07 53.1 5.1 22 217-238 28-49 (201)
352 3tlx_A Adenylate kinase 2; str 95.7 0.0051 1.7E-07 56.9 3.3 26 214-239 28-53 (243)
353 3pqc_A Probable GTP-binding pr 95.7 0.0046 1.6E-07 53.9 2.9 23 217-239 25-47 (195)
354 1r2q_A RAS-related protein RAB 95.7 0.0055 1.9E-07 52.0 3.2 21 217-237 8-28 (170)
355 4dsu_A GTPase KRAS, isoform 2B 95.7 0.0058 2E-07 53.0 3.2 22 217-238 6-27 (189)
356 3clv_A RAB5 protein, putative; 95.7 0.0058 2E-07 53.5 3.2 22 217-238 9-30 (208)
357 2oil_A CATX-8, RAS-related pro 95.7 0.0058 2E-07 53.6 3.2 22 217-238 27-48 (193)
358 2cxx_A Probable GTP-binding pr 95.6 0.0052 1.8E-07 53.5 2.9 23 217-239 3-25 (190)
359 3bc1_A RAS-related protein RAB 95.6 0.0059 2E-07 53.1 3.2 22 217-238 13-34 (195)
360 2hxs_A RAB-26, RAS-related pro 95.6 0.0066 2.3E-07 52.1 3.5 22 217-238 8-29 (178)
361 3t5d_A Septin-7; GTP-binding p 95.6 0.0049 1.7E-07 58.0 2.8 23 217-239 10-32 (274)
362 1upt_A ARL1, ADP-ribosylation 95.6 0.0061 2.1E-07 51.9 3.2 22 216-237 8-29 (171)
363 1r8s_A ADP-ribosylation factor 95.6 0.0062 2.1E-07 51.6 3.2 21 217-237 2-22 (164)
364 1m7b_A RND3/RHOE small GTP-bin 95.6 0.0095 3.2E-07 51.9 4.4 22 217-238 9-30 (184)
365 2f6r_A COA synthase, bifunctio 95.6 0.0058 2E-07 57.9 3.1 23 215-237 75-97 (281)
366 2g6b_A RAS-related protein RAB 95.6 0.0067 2.3E-07 52.2 3.2 22 217-238 12-33 (180)
367 2y8e_A RAB-protein 6, GH09086P 95.5 0.0062 2.1E-07 52.2 2.9 22 217-238 16-37 (179)
368 1z0f_A RAB14, member RAS oncog 95.5 0.0069 2.4E-07 51.9 3.2 23 217-239 17-39 (179)
369 1moz_A ARL1, ADP-ribosylation 95.5 0.0042 1.4E-07 53.8 1.8 23 215-237 18-40 (183)
370 3con_A GTPase NRAS; structural 95.5 0.007 2.4E-07 52.8 3.2 22 217-238 23-44 (190)
371 2a9k_A RAS-related protein RAL 95.5 0.0071 2.4E-07 52.2 3.2 22 217-238 20-41 (187)
372 2efe_B Small GTP-binding prote 95.5 0.0075 2.6E-07 52.0 3.3 22 217-238 14-35 (181)
373 3be4_A Adenylate kinase; malar 95.5 0.007 2.4E-07 54.8 3.2 26 214-239 4-29 (217)
374 1wf3_A GTP-binding protein; GT 95.5 0.0072 2.5E-07 57.9 3.3 22 217-238 9-30 (301)
375 2xb4_A Adenylate kinase; ATP-b 95.4 0.0078 2.7E-07 54.7 3.4 23 217-239 2-24 (223)
376 1ypw_A Transitional endoplasmi 95.4 0.00067 2.3E-08 74.0 -4.6 45 208-254 504-548 (806)
377 3v9p_A DTMP kinase, thymidylat 95.4 0.0071 2.4E-07 55.6 2.9 29 212-240 22-50 (227)
378 3a8t_A Adenylate isopentenyltr 95.4 0.0089 3E-07 58.2 3.7 27 214-240 39-65 (339)
379 2bme_A RAB4A, RAS-related prot 95.4 0.0074 2.5E-07 52.3 2.9 22 217-238 12-33 (186)
380 3euj_A Chromosome partition pr 95.4 0.02 6.8E-07 58.5 6.5 77 319-399 371-464 (483)
381 3t5g_A GTP-binding protein RHE 95.4 0.013 4.5E-07 50.5 4.5 21 217-237 8-28 (181)
382 1nrj_B SR-beta, signal recogni 95.4 0.008 2.7E-07 53.8 3.2 23 217-239 14-36 (218)
383 1vg8_A RAS-related protein RAB 95.4 0.0084 2.9E-07 53.0 3.2 23 217-239 10-32 (207)
384 1jbk_A CLPB protein; beta barr 95.4 0.0098 3.4E-07 51.4 3.6 27 213-239 41-67 (195)
385 2xtp_A GTPase IMAP family memb 95.4 0.0077 2.6E-07 55.9 3.1 23 217-239 24-46 (260)
386 2gf9_A RAS-related protein RAB 95.4 0.0084 2.9E-07 52.4 3.2 23 217-239 24-46 (189)
387 1lw7_A Transcriptional regulat 95.4 0.0061 2.1E-07 59.9 2.5 33 323-355 292-329 (365)
388 2bov_A RAla, RAS-related prote 95.4 0.0084 2.9E-07 52.9 3.2 22 217-238 16-37 (206)
389 1ksh_A ARF-like protein 2; sma 95.3 0.0087 3E-07 52.0 3.2 25 214-238 17-41 (186)
390 1e4v_A Adenylate kinase; trans 95.3 0.0081 2.8E-07 54.1 3.0 23 217-239 2-24 (214)
391 3iev_A GTP-binding protein ERA 95.3 0.0086 3E-07 57.5 3.3 22 217-238 12-33 (308)
392 2fg5_A RAB-22B, RAS-related pr 95.3 0.0082 2.8E-07 52.7 3.0 22 217-238 25-46 (192)
393 3kkq_A RAS-related protein M-R 95.3 0.012 4E-07 50.9 3.9 22 217-238 20-41 (183)
394 2cjw_A GTP-binding protein GEM 95.3 0.0089 3.1E-07 52.8 3.2 21 217-237 8-28 (192)
395 1mh1_A RAC1; GTP-binding, GTPa 95.3 0.0092 3.1E-07 51.5 3.2 21 217-237 7-27 (186)
396 3u61_B DNA polymerase accessor 95.3 0.045 1.5E-06 52.3 8.4 43 345-388 105-148 (324)
397 2h92_A Cytidylate kinase; ross 95.3 0.0073 2.5E-07 54.4 2.6 25 215-239 3-27 (219)
398 1z06_A RAS-related protein RAB 95.3 0.0094 3.2E-07 52.1 3.2 22 217-238 22-43 (189)
399 2gf0_A GTP-binding protein DI- 95.3 0.0084 2.9E-07 52.6 3.0 21 217-237 10-30 (199)
400 3tkl_A RAS-related protein RAB 95.3 0.012 4.1E-07 51.4 3.9 23 217-239 18-40 (196)
401 4dhe_A Probable GTP-binding pr 95.3 0.0051 1.7E-07 55.3 1.5 24 216-239 30-53 (223)
402 2qmh_A HPR kinase/phosphorylas 95.3 0.013 4.5E-07 52.6 4.1 34 204-238 24-57 (205)
403 1zbd_A Rabphilin-3A; G protein 95.2 0.01 3.4E-07 52.5 3.3 22 217-238 10-31 (203)
404 4edh_A DTMP kinase, thymidylat 95.2 0.0099 3.4E-07 54.0 3.3 29 213-241 4-32 (213)
405 1ak2_A Adenylate kinase isoenz 95.2 0.011 3.8E-07 54.0 3.7 26 214-239 15-40 (233)
406 3a1s_A Iron(II) transport prot 95.2 0.0098 3.4E-07 55.6 3.4 23 217-239 7-29 (258)
407 1sxj_B Activator 1 37 kDa subu 95.2 0.024 8.2E-07 53.8 6.2 42 345-387 107-148 (323)
408 3oes_A GTPase rhebl1; small GT 95.2 0.0088 3E-07 52.9 2.9 23 217-239 26-48 (201)
409 3d3q_A TRNA delta(2)-isopenten 95.2 0.0096 3.3E-07 58.0 3.3 25 216-240 8-32 (340)
410 2il1_A RAB12; G-protein, GDP, 95.2 0.0094 3.2E-07 52.4 3.0 22 217-238 28-49 (192)
411 2a5j_A RAS-related protein RAB 95.2 0.01 3.4E-07 52.0 3.2 22 217-238 23-44 (191)
412 3i8s_A Ferrous iron transport 95.2 0.0092 3.1E-07 56.2 3.1 23 217-239 5-27 (274)
413 1gwn_A RHO-related GTP-binding 95.2 0.015 5.2E-07 52.0 4.4 22 217-238 30-51 (205)
414 3dz8_A RAS-related protein RAB 95.2 0.0092 3.1E-07 52.3 2.9 23 217-239 25-47 (191)
415 1sky_E F1-ATPase, F1-ATP synth 95.2 0.0054 1.8E-07 62.3 1.5 42 204-246 141-182 (473)
416 2qu8_A Putative nucleolar GTP- 95.2 0.01 3.4E-07 53.9 3.2 22 217-238 31-52 (228)
417 4bas_A ADP-ribosylation factor 95.2 0.01 3.5E-07 52.0 3.1 21 217-237 19-39 (199)
418 3cnl_A YLQF, putative uncharac 95.1 0.011 3.8E-07 55.5 3.4 30 216-245 100-129 (262)
419 3lv8_A DTMP kinase, thymidylat 95.1 0.011 3.8E-07 54.6 3.4 27 214-240 26-52 (236)
420 3llu_A RAS-related GTP-binding 95.1 0.011 3.7E-07 52.2 3.2 24 217-240 22-45 (196)
421 3reg_A RHO-like small GTPase; 95.1 0.011 3.7E-07 51.9 3.2 22 217-238 25-46 (194)
422 1zj6_A ADP-ribosylation factor 95.1 0.01 3.6E-07 51.7 3.1 22 216-237 17-38 (187)
423 2o52_A RAS-related protein RAB 95.1 0.011 3.6E-07 52.5 3.1 22 217-238 27-48 (200)
424 2wsm_A Hydrogenase expression/ 95.1 0.01 3.4E-07 53.4 3.0 24 216-239 31-54 (221)
425 2atv_A RERG, RAS-like estrogen 95.1 0.011 3.9E-07 51.9 3.2 22 217-238 30-51 (196)
426 1zd9_A ADP-ribosylation factor 95.1 0.011 3.8E-07 51.7 3.2 22 217-238 24-45 (188)
427 2h57_A ADP-ribosylation factor 95.1 0.0083 2.8E-07 52.5 2.3 23 217-239 23-45 (190)
428 1x3s_A RAS-related protein RAB 95.1 0.011 3.9E-07 51.4 3.2 22 217-238 17-38 (195)
429 3tmk_A Thymidylate kinase; pho 95.1 0.012 4.1E-07 53.6 3.4 29 213-241 3-31 (216)
430 2p5s_A RAS and EF-hand domain 95.1 0.011 3.9E-07 52.1 3.2 24 216-239 29-52 (199)
431 3exa_A TRNA delta(2)-isopenten 95.1 0.013 4.3E-07 56.5 3.6 25 215-239 3-27 (322)
432 3bwd_D RAC-like GTP-binding pr 95.1 0.014 4.6E-07 50.3 3.6 23 216-238 9-31 (182)
433 1ltq_A Polynucleotide kinase; 95.1 0.011 3.9E-07 55.9 3.4 22 216-237 3-24 (301)
434 3cph_A RAS-related protein SEC 95.1 0.012 4E-07 52.3 3.2 23 216-238 21-43 (213)
435 4tmk_A Protein (thymidylate ki 95.1 0.013 4.3E-07 53.3 3.5 27 214-240 2-28 (213)
436 2h17_A ADP-ribosylation factor 95.1 0.0097 3.3E-07 51.7 2.6 22 217-238 23-44 (181)
437 2iwr_A Centaurin gamma 1; ANK 95.1 0.0092 3.1E-07 51.4 2.4 22 217-238 9-30 (178)
438 2bcg_Y Protein YP2, GTP-bindin 95.1 0.011 3.6E-07 52.5 2.9 22 217-238 10-31 (206)
439 2fv8_A H6, RHO-related GTP-bin 95.0 0.011 3.8E-07 52.6 3.0 22 217-238 27-48 (207)
440 2f7s_A C25KG, RAS-related prot 95.0 0.013 4.5E-07 52.4 3.4 23 217-239 27-49 (217)
441 2q3h_A RAS homolog gene family 95.0 0.013 4.5E-07 51.6 3.4 23 216-238 21-43 (201)
442 3c5c_A RAS-like protein 12; GD 95.0 0.013 4.4E-07 51.3 3.2 21 217-237 23-43 (187)
443 1jwy_B Dynamin A GTPase domain 95.0 0.012 3.9E-07 56.2 3.1 23 217-239 26-48 (315)
444 2j1l_A RHO-related GTP-binding 94.9 0.013 4.3E-07 52.6 3.1 21 217-237 36-56 (214)
445 3ld9_A DTMP kinase, thymidylat 94.9 0.014 4.7E-07 53.5 3.3 28 213-240 19-46 (223)
446 3def_A T7I23.11 protein; chlor 94.9 0.013 4.3E-07 54.8 3.1 23 217-239 38-60 (262)
447 2ocp_A DGK, deoxyguanosine kin 94.9 0.013 4.3E-07 53.9 3.1 27 214-240 1-27 (241)
448 2fh5_B SR-beta, signal recogni 94.9 0.018 6.2E-07 51.3 4.0 24 216-239 8-31 (214)
449 2p65_A Hypothetical protein PF 94.9 0.012 4.2E-07 50.7 2.8 28 213-240 41-68 (187)
450 1h65_A Chloroplast outer envel 94.9 0.013 4.4E-07 54.9 3.1 23 217-239 41-63 (270)
451 2fu5_C RAS-related protein RAB 94.9 0.0092 3.1E-07 51.6 1.9 22 217-238 10-31 (183)
452 3crm_A TRNA delta(2)-isopenten 94.8 0.014 4.9E-07 56.4 3.4 25 216-240 6-30 (323)
453 2gco_A H9, RHO-related GTP-bin 94.8 0.013 4.5E-07 51.8 2.9 22 217-238 27-48 (201)
454 1qvr_A CLPB protein; coiled co 94.8 0.033 1.1E-06 61.0 6.5 27 216-242 589-615 (854)
455 2b6h_A ADP-ribosylation factor 94.8 0.013 4.5E-07 51.6 2.7 23 215-237 29-51 (192)
456 2aka_B Dynamin-1; fusion prote 94.8 0.013 4.5E-07 55.2 2.9 23 217-239 28-50 (299)
457 2g3y_A GTP-binding protein GEM 94.7 0.017 5.8E-07 52.2 3.4 22 217-238 39-60 (211)
458 2i1q_A DNA repair and recombin 94.7 0.016 5.4E-07 55.8 3.4 27 211-237 94-120 (322)
459 3cmu_A Protein RECA, recombina 94.7 0.13 4.6E-06 60.7 11.6 34 203-236 1067-1102(2050)
460 2atx_A Small GTP binding prote 94.7 0.015 5.1E-07 50.9 3.0 22 217-238 20-41 (194)
461 1p5z_B DCK, deoxycytidine kina 94.7 0.011 3.6E-07 55.3 2.0 28 213-240 22-49 (263)
462 1q57_A DNA primase/helicase; d 94.7 0.22 7.6E-06 50.9 12.2 34 204-237 231-264 (503)
463 2zts_A Putative uncharacterize 94.7 0.022 7.4E-07 51.9 4.1 24 212-235 27-50 (251)
464 3umf_A Adenylate kinase; rossm 94.7 0.013 4.3E-07 53.5 2.4 29 211-239 25-53 (217)
465 1a5t_A Delta prime, HOLB; zinc 94.6 0.072 2.5E-06 51.5 7.9 43 344-387 107-149 (334)
466 2hf9_A Probable hydrogenase ni 94.6 0.016 5.5E-07 52.2 2.9 23 217-239 40-62 (226)
467 3tqf_A HPR(Ser) kinase; transf 94.5 0.027 9.3E-07 49.4 4.0 33 204-237 6-38 (181)
468 2r62_A Cell division protease 94.5 0.005 1.7E-07 57.3 -0.7 30 207-238 38-67 (268)
469 3foz_A TRNA delta(2)-isopenten 94.5 0.019 6.6E-07 55.1 3.4 25 215-239 10-34 (316)
470 4djt_A GTP-binding nuclear pro 94.5 0.0088 3E-07 53.6 0.9 22 217-238 13-34 (218)
471 2hup_A RAS-related protein RAB 94.5 0.019 6.4E-07 50.9 3.0 22 217-238 31-52 (201)
472 4gzl_A RAS-related C3 botulinu 94.5 0.019 6.3E-07 51.1 2.9 22 216-237 31-52 (204)
473 2x77_A ADP-ribosylation factor 94.4 0.013 4.5E-07 51.1 1.8 22 216-237 23-44 (189)
474 3cpj_B GTP-binding protein YPT 94.4 0.022 7.5E-07 51.3 3.3 22 217-238 15-36 (223)
475 3q3j_B RHO-related GTP-binding 94.4 0.022 7.5E-07 51.1 3.2 22 217-238 29-50 (214)
476 2yc2_C IFT27, small RAB-relate 94.3 0.0098 3.3E-07 52.5 0.8 22 217-238 22-43 (208)
477 2v3c_C SRP54, signal recogniti 94.3 0.0053 1.8E-07 61.9 -1.1 37 216-252 100-136 (432)
478 3r7w_A Gtpase1, GTP-binding pr 94.2 0.025 8.5E-07 54.2 3.3 26 214-239 2-27 (307)
479 2j0v_A RAC-like GTP-binding pr 94.1 0.024 8.3E-07 50.4 2.9 22 217-238 11-32 (212)
480 2orv_A Thymidine kinase; TP4A 94.0 0.24 8.1E-06 45.4 9.4 51 344-399 89-150 (234)
481 2orw_A Thymidine kinase; TMTK, 94.0 0.023 7.9E-07 50.2 2.5 52 344-400 75-138 (184)
482 3eph_A TRNA isopentenyltransfe 94.0 0.025 8.7E-07 56.3 3.0 24 216-239 3-26 (409)
483 4hlc_A DTMP kinase, thymidylat 93.9 0.031 1.1E-06 50.3 3.3 26 215-240 2-27 (205)
484 3sr0_A Adenylate kinase; phosp 93.9 0.032 1.1E-06 50.3 3.3 23 217-239 2-24 (206)
485 1puj_A YLQF, conserved hypothe 93.8 0.035 1.2E-06 52.6 3.6 27 216-242 121-147 (282)
486 3ec1_A YQEH GTPase; atnos1, at 93.7 0.032 1.1E-06 55.0 3.1 25 214-238 161-185 (369)
487 2xxa_A Signal recognition part 93.5 0.19 6.5E-06 50.5 8.5 28 214-241 99-126 (433)
488 3p32_A Probable GTPase RV1496/ 93.5 0.03 1E-06 54.7 2.5 25 216-240 80-104 (355)
489 2hjg_A GTP-binding protein ENG 93.5 0.034 1.2E-06 56.0 2.9 22 217-238 5-26 (436)
490 3gj0_A GTP-binding nuclear pro 93.4 0.027 9.1E-07 50.6 1.9 39 335-373 166-209 (221)
491 1wxq_A GTP-binding protein; st 93.4 0.038 1.3E-06 55.0 3.1 23 217-239 2-24 (397)
492 3pvs_A Replication-associated 93.3 0.024 8.2E-07 57.4 1.6 35 208-242 41-77 (447)
493 3h2y_A GTPase family protein; 93.3 0.033 1.1E-06 54.8 2.5 26 214-239 159-184 (368)
494 3th5_A RAS-related C3 botulinu 92.4 0.015 5.2E-07 51.4 0.0 22 216-237 31-52 (204)
495 2bjv_A PSP operon transcriptio 93.3 0.062 2.1E-06 49.8 4.2 28 214-241 28-55 (265)
496 1tue_A Replication protein E1; 93.2 0.034 1.1E-06 50.2 2.2 28 212-239 55-82 (212)
497 3hws_A ATP-dependent CLP prote 93.2 0.042 1.4E-06 53.7 3.0 25 215-239 51-75 (363)
498 3t15_A Ribulose bisphosphate c 93.2 0.047 1.6E-06 51.8 3.2 26 214-239 35-60 (293)
499 1d2n_A N-ethylmaleimide-sensit 93.1 0.042 1.4E-06 51.2 2.8 26 213-238 62-87 (272)
500 1mky_A Probable GTP-binding pr 93.1 0.079 2.7E-06 53.3 5.0 22 217-238 3-24 (439)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-80 Score=710.60 Aligned_cols=412 Identities=32% Similarity=0.433 Sum_probs=372.9
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++++++||.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||+|+.+.++|.+..++.
T Consensus 229 i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 308 (1321)
T 4f4c_A 229 IVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEA 308 (1321)
T ss_dssp HHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+......+......++ ....++++++|++++..|.+++|.+++++.++..+..|+..++..+..++++.++++|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~r 388 (1321)
T 4f4c_A 309 KKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASG 388 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655554443333332 3445667788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCC-CCCCCCCccEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 162 LFDLTKFKSKVIEKPDA-VSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.++++.+++..+.... ....+..+.|+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|
T Consensus 389 i~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 389 IYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp HHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred HHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 99999877654332221 1222345789999999999854 357999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc
Q 014366 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (426)
Q Consensus 240 ~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 319 (426)
+|++|+|.+||+|+++++.+++|++|+||+|+|+||++||+|||.||.+ +.+++++.++|+.++++++++.+|+|+||
T Consensus 469 ~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~--~~~~~~v~~a~~~a~l~~~i~~lp~G~~T 546 (1321)
T 4f4c_A 469 DVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE--GITREEMVAACKMANAEKFIKTLPNGYNT 546 (1321)
T ss_dssp CCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT--TCCHHHHHHHHHHTTCHHHHHHSTTTTSS
T ss_pred ccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcc--cchHHHHHHHHHHccchhHHHcCCCCCcc
Confidence 9999999999999999999999999999999999999999999999975 45789999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEe
Q 014366 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 320 ~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~ 399 (426)
.+||+|.+|||||||||+||||+++||+|||||||||+||+++|+.+.+.|.++.+++|+|+||||+++++.||+|+||+
T Consensus 547 ~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~ 626 (1321)
T 4f4c_A 547 LVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCK 626 (1321)
T ss_dssp EESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEE
T ss_pred EecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEee
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred CCEEEEeccccccccCc
Q 014366 400 NGKLEELNRSTLLGSNH 416 (426)
Q Consensus 400 ~G~i~e~g~~~~l~~~~ 416 (426)
+|+|+|+|+|++|.++.
T Consensus 627 ~G~ive~Gth~eL~~~~ 643 (1321)
T 4f4c_A 627 NGQVVEVGDHRALMAQQ 643 (1321)
T ss_dssp TTEEEEEECHHHHHTTT
T ss_pred CCeeeccCCHHHHHHhh
Confidence 99999999999887653
No 2
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.3e-80 Score=655.22 Aligned_cols=411 Identities=27% Similarity=0.470 Sum_probs=367.0
Q ss_pred EeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHHH
Q 014366 4 QMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSDL 83 (426)
Q Consensus 4 ~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 83 (426)
++++++|.+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++..
T Consensus 157 ~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~ 236 (587)
T 3qf4_A 157 MAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLR 236 (587)
T ss_dssp HHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999887776
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 84 CELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERL 162 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri 162 (426)
+...+.............. .....++++++|++++..|.+++|.++++..+...+..|+..++..+..++++..+++|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri 316 (587)
T 3qf4_A 237 RSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRV 316 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555444433333322 233456677889999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 163 FDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
.++++.+++..+.......++..+.|+++||+|+|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|+
T Consensus 317 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~ 396 (587)
T 3qf4_A 317 LEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE 396 (587)
T ss_dssp HHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS
T ss_pred HHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC
Confidence 99998766543222221222335689999999999765567999999999999999999999999999999999999999
Q ss_pred ccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccC
Q 014366 243 SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIG 322 (426)
Q Consensus 243 ~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~ 322 (426)
+|+|.+||+|+++++.+++|++++||||+|.+|++||+||+.++.+ ..+++++.++++.++++++++.+|+|++|.++
T Consensus 397 ~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~ 474 (587)
T 3qf4_A 397 RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRVE 474 (587)
T ss_dssp EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCS--SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEEC
T ss_pred CcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCC--CCCHHHHHHHHHHhCcHHHHHhcccchhhHhc
Confidence 9999999999999999999999999999999999999999999864 34678899999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCE
Q 014366 323 PRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGK 402 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~ 402 (426)
++|.+||||||||++||||++++|++||||||||+||+++++.+.+.++++.+++|+|+||||++++..||||++|++|+
T Consensus 475 ~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~ 554 (587)
T 3qf4_A 475 RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGK 554 (587)
T ss_dssp SSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTE
T ss_pred CCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred EEEeccccccccCc
Q 014366 403 LEELNRSTLLGSNH 416 (426)
Q Consensus 403 i~e~g~~~~l~~~~ 416 (426)
+++.|+++++.++.
T Consensus 555 i~~~g~~~el~~~~ 568 (587)
T 3qf4_A 555 VAGFGTHKELLEHC 568 (587)
T ss_dssp EEEEECHHHHHHHC
T ss_pred EEEECCHHHHHhCC
Confidence 99999998887543
No 3
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.8e-80 Score=655.96 Aligned_cols=412 Identities=34% Similarity=0.543 Sum_probs=369.9
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
+++++++|++++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+||+|+.+.++|++..++.
T Consensus 154 ~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 233 (578)
T 4a82_A 154 SIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNF 233 (578)
T ss_dssp HHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..+...........+ .+..++++++|++++..|.+++|.+++++.+...+..|+..+...+..++++..+++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~r 313 (578)
T 4a82_A 234 LTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDR 313 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666665555444433332 3345667788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++..+.....+.+...+.|+++||+|+|+++.+++|+|+||++++||++||+||||||||||+++|+|+++|
T Consensus 314 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 393 (578)
T 4a82_A 314 VFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV 393 (578)
T ss_dssp HHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred HHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 99999877654332222222233568999999999986556799999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+|+++.+.+++|++++||||+|.+|++||+||+.++.+ ..+++++.++++.++++++++.+|+|++|.+
T Consensus 394 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~ 471 (578)
T 4a82_A 394 TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEV 471 (578)
T ss_dssp SEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS--SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC
T ss_pred CCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhCcchhhhhh
Confidence 99999999999999999999999999999999999999999999864 3467889999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.++++.+++|+|+||||++.++.||||++|++|
T Consensus 472 ~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G 551 (578)
T 4a82_A 472 GERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENG 551 (578)
T ss_dssp CGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETT
T ss_pred ccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
++++.|+++++.+++
T Consensus 552 ~i~~~g~~~el~~~~ 566 (578)
T 4a82_A 552 HIVETGTHRELIAKQ 566 (578)
T ss_dssp EEEEEECHHHHHHTT
T ss_pred EEEEECCHHHHHhCC
Confidence 999999999887654
No 4
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.3e-78 Score=645.40 Aligned_cols=413 Identities=36% Similarity=0.519 Sum_probs=363.0
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++++++||++++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+||.|+.+.++|.+..++.
T Consensus 155 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 234 (595)
T 2yl4_A 155 SMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHV 234 (595)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHH
Confidence 45788999999999999999998888999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..+...+......++ ....++++++|++++..|.+++|.+++++.+...+..|+..++..+..++++..+++|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~r 314 (595)
T 2yl4_A 235 MQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGR 314 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666655554443333332 2334566778999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCcc-EEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGD-VKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~-i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.++++.+++..+.....+.....+. |+++||+|+|+++ .+++|+|+||++++||++||+||||||||||+++|+|++
T Consensus 315 i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 315 LWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp HHHHHTCCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred HHHHHcCCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 99999876543221111111122456 9999999999753 246999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCC-CCCCHHHHHHHHHHhchHHHHHhcCCCcc
Q 014366 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLM-TKIDMERVEHTARTANADEFVRTLPQGYN 318 (426)
Q Consensus 240 ~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~lp~g~~ 318 (426)
+|++|+|.+||+++.+.+..++|++++||||+|.+|++|++||+.++.+. .+.++++++++++.++++++++++|+|+|
T Consensus 395 ~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~ 474 (595)
T 2yl4_A 395 DPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFN 474 (595)
T ss_dssp CCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGG
T ss_pred CCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCccccc
Confidence 99999999999999999999999999999999999999999999997643 12567889999999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEE
Q 014366 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLL 398 (426)
Q Consensus 319 t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl 398 (426)
|.+|++|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.|+++.+++|+|+||||++.++.||||++|
T Consensus 475 ~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l 554 (595)
T 2yl4_A 475 TVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVL 554 (595)
T ss_dssp CBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEE
T ss_pred ccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999987789999999999999999999999
Q ss_pred eCCEEEEeccccccccC
Q 014366 399 DNGKLEELNRSTLLGSN 415 (426)
Q Consensus 399 ~~G~i~e~g~~~~l~~~ 415 (426)
++|++++.|+++++.++
T Consensus 555 ~~G~i~~~g~~~~l~~~ 571 (595)
T 2yl4_A 555 DQGKITEYGKHEELLSK 571 (595)
T ss_dssp ETTEEEEEECSCC----
T ss_pred ECCEEEEECCHHHHHhC
Confidence 99999999999988764
No 5
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.9e-78 Score=642.67 Aligned_cols=411 Identities=35% Similarity=0.541 Sum_probs=366.4
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++++++||++++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+||.|+.+.++|.+..++.
T Consensus 158 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~ 237 (582)
T 3b5x_A 158 TLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSM 237 (582)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 45678999999999999999998888899999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..+...+......++ .+..++++++|++++..|.+++|.+++++.+...+..|+..++..+..++++..+++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~r 317 (582)
T 3b5x_A 238 RQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQT 317 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666665555544443333 3335566778999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++..+. ..+.++..+.|+++||+|+|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|
T Consensus 318 i~~~l~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 318 LFGLMDLETERDNG--KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred HHHHHcCCCcCCCC--CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 99999876543211 1111222457999999999975334699999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+|+.+.+..++|++++||||+|.+|++|++||+.++.. .+.++++++++++.++++++++++|+|+||.+
T Consensus 396 ~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~ 474 (582)
T 3b5x_A 396 DSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE-GEYTREQIEQAARQAHAMEFIENMPQGLDTVI 474 (582)
T ss_pred CCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCC-CCCCHHHHHHHHHHCCCHHHHHhCcccccchh
Confidence 99999999999999988999999999999999999999999999752 23567889999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|++|.+||||||||++||||++++|++||||||||+||+++++.+.+.|+++.+++|+|+||||++.++.||||++|++|
T Consensus 475 ~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G 554 (582)
T 3b5x_A 475 GENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEG 554 (582)
T ss_pred cCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999987789999999999999999999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
++++.|+++++.+++
T Consensus 555 ~i~~~g~~~~l~~~~ 569 (582)
T 3b5x_A 555 EIIERGRHADLLAQD 569 (582)
T ss_pred EEEEECCHHHHHhCC
Confidence 999999998887654
No 6
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.7e-78 Score=643.03 Aligned_cols=410 Identities=34% Similarity=0.514 Sum_probs=365.0
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
++++++||++++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+||.|+.+.++|.+..++.
T Consensus 158 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~ 237 (582)
T 3b60_A 158 IMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKM 237 (582)
T ss_dssp HHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 35678999999999999999999888899999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..+...+......++ ....++++++|++++..|.+++|.+++++.+...+..|+..++..+..++++..+++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~r 317 (582)
T 3b60_A 238 RLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666665555544443333 2334556778888999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++..+. ..+.++..+.|+++||+|+|+++.+++|+|+||++++||++||+||||||||||+++|+|+++|
T Consensus 318 i~~~l~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p 395 (582)
T 3b60_A 318 LFAILDSEQEKDEG--KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI 395 (582)
T ss_dssp HHHHHHSCCSCCCC--CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred HHHHHcCCCCccCC--CCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC
Confidence 99999876553221 1111223457999999999975334699999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+++.+.+..++|++++||||+|.+|++|++||+.++.. .+.++++++++++.++++++++++|+|++|.+
T Consensus 396 ~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~ 474 (582)
T 3b60_A 396 DEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART-EEYSREQIEEAARMAYAMDFINKMDNGLDTII 474 (582)
T ss_dssp SEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTT-SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBC
T ss_pred CCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCC-CCCCHHHHHHHHHHcCCHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999752 23567889999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.++++.+++|+|+||||++.++.||||++|++|
T Consensus 475 ~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G 554 (582)
T 3b60_A 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDG 554 (582)
T ss_dssp CTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999987789999999999999899999999999
Q ss_pred EEEEeccccccccC
Q 014366 402 KLEELNRSTLLGSN 415 (426)
Q Consensus 402 ~i~e~g~~~~l~~~ 415 (426)
++++.|+++++.++
T Consensus 555 ~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 555 IIVERGTHSELLAQ 568 (582)
T ss_dssp EEEEEECHHHHHHH
T ss_pred EEEEecCHHHHHHc
Confidence 99999999887654
No 7
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.3e-80 Score=707.89 Aligned_cols=415 Identities=30% Similarity=0.411 Sum_probs=357.7
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
+++++++|.+++++++++|+++++..+..++..+...+..+..++....+.|+++|+++||+|+.|+.+.++|.+..+..
T Consensus 889 ~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~ 968 (1321)
T 4f4c_A 889 GLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIP 968 (1321)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred eeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHH
Confidence 35678999999999999999988888777777777777778888899999999999999999999999999999888776
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSL--VSFITSLVFMIEPIQGVGKAYNEFKQGEPAI 159 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~l~~g~l--~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~ 159 (426)
.+...+......+...+.. ...+..++++++|++++..+..+.+.+ ++++.+......|+..+...+..+..+..+.
T Consensus 969 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~ 1048 (1321)
T 4f4c_A 969 HKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAG 1048 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655554444333332 223445566777888888877665544 3334444444567888888999999999999
Q ss_pred HHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 160 ERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 160 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+|+.++++.+++..+.....+.++..+.|+|+||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+
T Consensus 1049 ~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1049 GIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp HHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred HHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 99999998776654333333334456789999999999864 34699999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcc
Q 014366 239 YDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN 318 (426)
Q Consensus 239 ~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~ 318 (426)
|+|++|+|.+||+|+++++.+++|++|++|||||.||++||||||+||....+.++++++++++.+++++++..+|+|||
T Consensus 1129 ~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~Gld 1208 (1321)
T 4f4c_A 1129 YDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFE 1208 (1321)
T ss_dssp SCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTC
T ss_pred ccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCC
Confidence 99999999999999999999999999999999999999999999999864456789999999999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEE
Q 014366 319 THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLL 398 (426)
Q Consensus 319 t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl 398 (426)
|.+||+|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||||+||
T Consensus 1209 T~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vl 1288 (1321)
T 4f4c_A 1209 TRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVV 1288 (1321)
T ss_dssp SEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEE
T ss_pred CEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred eCCEEEEeccccccccCcc
Q 014366 399 DNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 399 ~~G~i~e~g~~~~l~~~~~ 417 (426)
++|+|+|+|+|++|.++++
T Consensus 1289 d~G~IvE~Gth~eLl~~~g 1307 (1321)
T 4f4c_A 1289 SNGTIIEKGTHTQLMSEKG 1307 (1321)
T ss_dssp SSSSEEEEECHHHHHHCC-
T ss_pred ECCEEEEECCHHHHHhCCc
Confidence 9999999999998887643
No 8
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-79 Score=650.07 Aligned_cols=410 Identities=30% Similarity=0.507 Sum_probs=367.1
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
+++++++|++++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+||+|+.+.++|.+..++.
T Consensus 170 ~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~ 249 (598)
T 3qf4_B 170 IMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESL 249 (598)
T ss_dssp HHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQLI-YFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+......+...+..++ .+..++++++|++++..|.+++|.+++++.+...+..|+..+...+..++++..+++|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~r 329 (598)
T 3qf4_B 250 RKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAER 329 (598)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555544444433332 3345666778999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 162 LFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+.++++.+++.... ...+.++..+.|+++||+|+|+++ +++|+|+||++++||++||+||||||||||+++|+|+++|
T Consensus 330 i~~~l~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 407 (598)
T 3qf4_B 330 IFEILDLEEEKDDP-DAVELREVRGEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV 407 (598)
T ss_dssp HHHHTTSCCCCCCS-SCCCCCSCCCCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred HHHHHcCCCCCCCC-CCCCCCCCCCeEEEEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC
Confidence 99999877654221 111222335689999999999754 4699999999999999999999999999999999999999
Q ss_pred CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc
Q 014366 242 LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI 321 (426)
Q Consensus 242 ~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~ 321 (426)
++|+|.+||+|+.+++.+++|++++||||+|.+|++||+||+.++.+ ..++++++++++.++++++++.+|+|++|.+
T Consensus 408 ~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 485 (598)
T 3qf4_B 408 DRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP--GATDEEIKEAAKLTHSDHFIKHLPEGYETVL 485 (598)
T ss_dssp SEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST--TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBC
T ss_pred CCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC--CCCHHHHHHHHHHhCCHHHHHhccccccchh
Confidence 99999999999999999999999999999999999999999999864 3456788999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 322 GPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
|++|.+||||||||++||||++++|++||||||||+||+++++.+.+.++++.+++|+|+||||++.++.||+|++|++|
T Consensus 486 ~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G 565 (598)
T 3qf4_B 486 TDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDG 565 (598)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred EEEEeccccccccCc
Q 014366 402 KLEELNRSTLLGSNH 416 (426)
Q Consensus 402 ~i~e~g~~~~l~~~~ 416 (426)
++++.|+++++.++.
T Consensus 566 ~i~~~g~~~~l~~~~ 580 (598)
T 3qf4_B 566 EIVEMGKHDELIQKR 580 (598)
T ss_dssp SEEECSCHHHHHHTT
T ss_pred EEEEECCHHHHHhCC
Confidence 999999998887653
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=8.4e-75 Score=660.64 Aligned_cols=411 Identities=32% Similarity=0.446 Sum_probs=366.3
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
+++++++|++++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|.+..++.
T Consensus 201 ~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~ 280 (1284)
T 3g5u_A 201 IIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEA 280 (1284)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQL-IYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+......+......+ .+...++++++|++++..|.+++|.+++++.++.....|+..+...+..++.+..+++|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~r 360 (1284)
T 3g5u_A 281 KRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYE 360 (1284)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555444444333332 23445677888999999999999999988888888889999999999999999999999
Q ss_pred HHHhhcCcccccCCC-CCCCCCCCCccEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 162 LFDLTKFKSKVIEKP-DAVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 162 i~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.++++.+++..+.. .........+.|+++||+|+|+++ ..++|+|+||+|++||++|||||||||||||+++|+|+|
T Consensus 361 i~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 361 VFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp HHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred HHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 999998766543211 111122335789999999999854 346999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc
Q 014366 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (426)
Q Consensus 240 ~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 319 (426)
+|++|+|.+||+|+++++.+++|++|+||||+|++|++||+|||.++.+ +.++++++++++.+++++++..+|+|+||
T Consensus 441 ~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 518 (1284)
T 3g5u_A 441 DPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDT 518 (1284)
T ss_dssp CCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS--SCCHHHHHHHHHHTTCHHHHHHSTTGGGC
T ss_pred CCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccc
Confidence 9999999999999999999999999999999999999999999999864 35688999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEe
Q 014366 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 320 ~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~ 399 (426)
.+|++|.+||||||||++|||||+++|+|||||||||+||+++++.+.+.+++..+++|+|+||||++++..||+|++|+
T Consensus 519 ~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~ 598 (1284)
T 3g5u_A 519 LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFD 598 (1284)
T ss_dssp CCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECS
T ss_pred cccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred CCEEEEeccccccccC
Q 014366 400 NGKLEELNRSTLLGSN 415 (426)
Q Consensus 400 ~G~i~e~g~~~~l~~~ 415 (426)
+|+++|.|+++++.++
T Consensus 599 ~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 599 GGVIVEQGNHDELMRE 614 (1284)
T ss_dssp SSCCCCEECHHHHHHT
T ss_pred CCEEEEECCHHHHHhC
Confidence 9999999999887654
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.7e-71 Score=633.53 Aligned_cols=414 Identities=28% Similarity=0.442 Sum_probs=364.7
Q ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCchHHHHHHHHHHHHHH
Q 014366 3 TQMLVISPVLSLISALVIPSMALVIAYLGERLRKISKQSHLSIASLSAYLNEVLPAILFVKANNAEMCESARFRRLAHSD 82 (426)
Q Consensus 3 ~~~~~~s~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 82 (426)
+++++++|.+++++++++|+++++..+..++.++...+..+..++....+.|.++|+++||+|+.|+.+.++|.+..+..
T Consensus 844 i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~ 923 (1284)
T 3g5u_A 844 IISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIP 923 (1284)
T ss_dssp HHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 35678899999999999999999888888888888888888899999999999999999999999999999999887766
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014366 83 LCELLKKRKMKALIPQTVQ-LIYFGALFILCGGSLLVSGGSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIER 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~lv~~g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~r 161 (426)
.+...+..........+.. ..++..++++++|++++..|.++.+.++.++.+......|+..+...+..++++..+++|
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~r 1003 (1284)
T 3g5u_A 924 YRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASH 1003 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555554444333333 234446677788999999999999999999988888888999988888889999999999
Q ss_pred HHHhhcCcccccCCCC-CCCCCCCCccEEEEeEEEEeCCC-CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 162 LFDLTKFKSKVIEKPD-AVSLDHINGDVKFCNISFKYADN-MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 162 i~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.++++.+++...... ........+.|+++||+|+|+++ ..++|+|+||+|++||++||+||||||||||+++|+|++
T Consensus 1004 i~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1004 IIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp HHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred HHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 9999987665432211 11122235689999999999854 246999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc
Q 014366 240 DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT 319 (426)
Q Consensus 240 ~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 319 (426)
+|++|+|.+||+|+++.+.+++|++++||||||.+|++||+||+.++.+....++++++++++.++++++++++|+||||
T Consensus 1084 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt 1163 (1284)
T 3g5u_A 1084 DPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNT 1163 (1284)
T ss_dssp CCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGC
T ss_pred CCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCcccccc
Confidence 99999999999999999999999999999999999999999999998765456788999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEe
Q 014366 320 HIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 320 ~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~ 399 (426)
.+|++|.+||||||||++|||||+++|+|||||||||+||+.+++.+.+.|++..+++|+|+||||++++..||||++|+
T Consensus 1164 ~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~ 1243 (1284)
T 3g5u_A 1164 RVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQ 1243 (1284)
T ss_dssp BCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEE
T ss_pred ccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999998878899999999999999999999999
Q ss_pred CCEEEEeccccccccCc
Q 014366 400 NGKLEELNRSTLLGSNH 416 (426)
Q Consensus 400 ~G~i~e~g~~~~l~~~~ 416 (426)
+|+++|.|+|+++.+++
T Consensus 1244 ~G~i~~~g~~~~l~~~~ 1260 (1284)
T 3g5u_A 1244 NGKVKEHGTHQQLLAQK 1260 (1284)
T ss_dssp TBEEEEEECHHHHHHSC
T ss_pred CCEEEEECCHHHHHhCC
Confidence 99999999998887654
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.4e-67 Score=512.98 Aligned_cols=265 Identities=37% Similarity=0.641 Sum_probs=236.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCc
Q 014366 148 AYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGG 227 (426)
Q Consensus 148 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsG 227 (426)
++..++.+..+++|++++++.+++..+.....+.....+.|+++||+|+|+++ .++|+|+||+|++||++||+||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCch
Confidence 45677888899999999987665433222222222234679999999999754 46999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchH
Q 014366 228 KSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANAD 307 (426)
Q Consensus 228 KSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~ 307 (426)
||||+++|+|+++|++|+|.++|+++..++..++|++|+||||++.+|++||+|||.++.. ..++++++++++.+++.
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~--~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV--TAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST--TCCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc--cCCHHHHHHHHHHhCcH
Confidence 9999999999999999999999999999999999999999999999999999999999864 34578899999999999
Q ss_pred HHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChH
Q 014366 308 EFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLE 387 (426)
Q Consensus 308 ~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 387 (426)
+++..+|+|++|.++++|.+||||||||++|||||+++|+|||||||||+||+.++..|++.|+++.+++|+|+||||++
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887899999999999
Q ss_pred HHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 388 TVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 388 ~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
.+..||||++|++|+|++.|+++++.++
T Consensus 251 ~~~~aD~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 251 TVVNADQILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp HHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence 9989999999999999999999887654
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.6e-59 Score=445.88 Aligned_cols=228 Identities=43% Similarity=0.703 Sum_probs=211.3
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
.+|+++||+|+|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|++|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 46999999999943224699999999999999999999999999999999999999999999999999888877888899
Q ss_pred EEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 266 ~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
+||||++.+|+.|++||+.++.. ..+.+++.++++.+++.++++++|.|+++.+++++.+||||||||++|||||+++
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCT--TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCccccccHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999998899999998743 2356778889999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
|++||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.++
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTS
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999998768899999999998888999999999999999999877655
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.3e-57 Score=436.13 Aligned_cols=227 Identities=38% Similarity=0.639 Sum_probs=208.7
Q ss_pred ccEEEEeEEEEeCCCC-CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 186 GDVKFCNISFKYADNM-PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~-~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
..|+++||+|+|++.. +++|+|+||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|+++...+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 4699999999997532 3699999999999999999999999999999999999987 8999999999987777788899
Q ss_pred eEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 265 i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
++||||++.+|+.|++||+.++.. ..+.+++.++++.+++.+++..+|+|+++.+++++.+||||||||++|||||++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~--~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~ 172 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKL--DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK 172 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT--TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcccccCHHHHHhccCC--CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc
Confidence 999999999998899999998643 234667788899999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+|++||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999998778899999999998888999999999999999998877543
No 14
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1e-58 Score=439.59 Aligned_cols=226 Identities=38% Similarity=0.647 Sum_probs=207.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++||+|+|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|++++|
T Consensus 2 l~~~~l~~~y~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCCC-CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 7899999999532 469999999999999999999999999999999999999999999999999987766677889999
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
|||++.+|+.|++||+.++.. ...+.+++.++++.+++.++++++|.|+++.+++++.+||||||||++|||||+++|+
T Consensus 81 v~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLE-GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTT-SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EcCCCccccccHHHHHhhhcc-CCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999998999999998622 1345677889999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 348 VLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 348 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+||||||||+||+.+++.+.+.|+++.+++|+|++||+++.+..||||++|++|++++.|+++++..+
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence 99999999999999999999999988778899999999998888999999999999999998877543
No 15
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.6e-57 Score=437.74 Aligned_cols=229 Identities=38% Similarity=0.570 Sum_probs=207.2
Q ss_pred ccEEEEeEEEEeCC-CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 186 GDVKFCNISFKYAD-NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 186 ~~i~~~~v~~~y~~-~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
+.|+++||+|+|++ ...++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999975 12469999999999999999999999999999999999999999999999999987777778889
Q ss_pred eEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 265 i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
|+||||++.+|+.||+||+.++..... ..+++.++++..++.++++.+|.|+++.+++++.+||||||||++|||||++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccccccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 999999999998899999998753211 2255667777888999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+|++||||||||+||+.+++.+.+.|+++.+ ++|||+|||+++.+..||+|++|++|++++.|+++++.++
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999853 7899999999999888999999999999999998877543
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-57 Score=457.55 Aligned_cols=235 Identities=23% Similarity=0.431 Sum_probs=217.3
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
.+.|+++||+|+|+++..++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+...+|+.
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 45799999999996444579999999999999999999999999999999999998 99999999999999998888999
Q ss_pred eEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 265 i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
++||||++.+|+.||+||+.+.. ....++++++++.+++.++++++|.++++.+++.+.+|||||||||+|||||++
T Consensus 96 ig~v~Q~~~lf~~tv~enl~~~~---~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 96 FGVIPQKVFIFSGTFRKNLDPNA---AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp EEEESCCCCCCSEEHHHHHCTTC---CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEcCCcccCccCHHHHhhhcc---ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998543 235678899999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccCcchhhhcC
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSNHDSLVSAG 423 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~~~~l~~~~ 423 (426)
+|++||||||||+||+.++..+.+.|+++..++|+|+|||+++.+..||||++|++|+|++.|+++++++++...+.++
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va~ 251 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAG 251 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHHh
Confidence 9999999999999999999999999998777889999999998888899999999999999999999988776555443
No 17
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=5.9e-56 Score=440.31 Aligned_cols=220 Identities=31% Similarity=0.439 Sum_probs=188.8
Q ss_pred ccEEEEeEEEEeCCC--CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---
Q 014366 186 GDVKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS--- 260 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~--- 260 (426)
..|+++||+++|+.+ ..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+..+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 469999999999753 235899999999999999999999999999999999999999999999999999887654
Q ss_pred HhcceEEEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 261 LRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
+|++||||||++.+|+. ||+||+.++......+. +++.++++.+++ ....+..+.+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL-----------~~~~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL-----------GDKHDSYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC-----------GGGTTCCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------chHhcCChhhCCHHHHHH
Confidence 47889999999999865 99999987532222222 234444554444 444455678999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
++|||||+.+|++||||||||+||+.++..+++.|+++. .+.|||+|||+++.+. .||||++|++|++++.|+++++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999885 3789999999999986 7999999999999999999888
Q ss_pred ccCc
Q 014366 413 GSNH 416 (426)
Q Consensus 413 ~~~~ 416 (426)
+.++
T Consensus 252 ~~~p 255 (366)
T 3tui_C 252 FSHP 255 (366)
T ss_dssp HSSC
T ss_pred HhCC
Confidence 7664
No 18
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.8e-55 Score=411.45 Aligned_cols=214 Identities=24% Similarity=0.397 Sum_probs=193.4
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
+.|+++||+|+|+++.+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| ++
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 46999999999974335799999999999999999999999999999999999999999999998 49
Q ss_pred EEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 266 GLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 266 ~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
+|+||++.+|+.|++||+.++.. ....+..+.++.+++.++++.+|.+.++.+++++.+||||||||++|||||+++
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~ 148 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVS---YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 148 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSC---CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEecCCcccCCCHHHHhhccCC---cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999998999999998643 223445667788899999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHH-HHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 346 SSVLILDEATSALDSRSELLVRQAV-DRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
|++||||||||+||+.+++.+.+.+ +++.+++|+|++||+++.+..||++++|++|++++.|+++++.++
T Consensus 149 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 149 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999974 555557899999999998888999999999999999998877654
No 19
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.4e-55 Score=415.94 Aligned_cols=215 Identities=31% Similarity=0.477 Sum_probs=179.3
Q ss_pred EEEEeEEEEeCCCC--CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH----
Q 014366 188 VKFCNISFKYADNM--PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL---- 261 (426)
Q Consensus 188 i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~---- 261 (426)
|+++||+|+|+++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 359999999999999999999999999999999999999999999999999998887653
Q ss_pred hcceEEEecCCCCCcc-cHHHHHcCCCCC---CCCCHH----HHHHHHHHhchHHHHHhcCCCcccc-cCCCCCCCChHH
Q 014366 262 RRHVGLVSQDITLFSG-TVAENIGYRDLM---TKIDME----RVEHTARTANADEFVRTLPQGYNTH-IGPRGSSLSGGQ 332 (426)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eni~~~~~~---~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~-~~~~g~~LSgGq 332 (426)
|+++|||||++.+|+. ||+||+.++... ...+.+ ++.++++.+ |+... .+..+.+|||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGq 150 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA-----------ELEERFANHKPNQLSGGQ 150 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHT-----------TCCGGGTTCCGGGSCHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHC-----------CCChhhhhCChhhCCHHH
Confidence 3469999999999876 999999763211 112222 223333333 33332 356778999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHHhcCEEEEEeCCEEEEecccc
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~ 410 (426)
|||++|||||+.+|++||||||||+||+.++..+.+.|+++. + ++|+|+|||+++.+..||||++|++|++++.++++
T Consensus 151 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 151 QQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChh
Confidence 999999999999999999999999999999999999999885 3 78999999999977789999999999999999877
Q ss_pred ccc
Q 014366 411 LLG 413 (426)
Q Consensus 411 ~l~ 413 (426)
++.
T Consensus 231 ~~~ 233 (235)
T 3tif_A 231 GFD 233 (235)
T ss_dssp ---
T ss_pred hhc
Confidence 654
No 20
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.4e-55 Score=424.60 Aligned_cols=219 Identities=27% Similarity=0.432 Sum_probs=185.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC--CCHHHHhcc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN--IRLDSLRRH 264 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~--~~~~~~r~~ 264 (426)
.|+++||+|+|+++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+...+|++
T Consensus 7 ~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 59999999999754 359999999999999999999999999999999999999999999999999852 233467889
Q ss_pred eEEEecCC--CCCcccHHHHHcCCCCCCCCCHH----HHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 265 VGLVSQDI--TLFSGTVAENIGYRDLMTKIDME----RVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 265 i~~v~Q~~--~lf~~ti~eni~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
||||||+| .+|..||+||+.++......+.+ ++.++++.++ ++...+..+.+||||||||++|
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------L~~~~~~~~~~LSgGqkQRv~i 154 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTG-----------IEHLKDKPTHCLSFGQKKRVAI 154 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTT-----------CGGGTTSBGGGSCHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CchhhcCCcccCCHHHHHHHHH
Confidence 99999998 46778999999875322222332 3344444444 4444455678999999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
||||+.+|++||||||||+||+.+++.+.+.|+++. + ++|||+|||+++.+. .||||++|++|++++.|+++++.++
T Consensus 155 AraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 155 AGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999999875 3 789999999999886 7999999999999999999887765
Q ss_pred cc
Q 014366 416 HD 417 (426)
Q Consensus 416 ~~ 417 (426)
+.
T Consensus 235 ~~ 236 (275)
T 3gfo_A 235 KE 236 (275)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 21
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=6.6e-55 Score=411.82 Aligned_cols=213 Identities=26% Similarity=0.433 Sum_probs=191.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+|+|++..+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +++
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 4899999999974334699999999999999999999999999999999999999999999998 399
Q ss_pred EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 267 LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 267 ~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
||||++.+++.|++||+.++... ..+...++.+.+++.+.+..+|.|+++.+++++.+||||||||++|||||+++|
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 146 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQL---EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 146 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSCC---CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEcCCCcCCCcCHHHHhhCcccc---CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999998888999999986532 223455677778888888889999999999999999999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHH---HHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccccC
Q 014366 347 SVLILDEATSALDSRSELLVRQAVD---RLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 347 ~illlDEpts~LD~~~~~~i~~~l~---~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
++||||||||+||+.+++.+.+.|. ++.+++|+|++||+++.+..||++++|++|++++.|+++++.++
T Consensus 147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc
Confidence 9999999999999999999999994 44457899999999998888999999999999999998877543
No 22
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.3e-54 Score=428.70 Aligned_cols=221 Identities=28% Similarity=0.390 Sum_probs=186.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC--CHHHHhcc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI--RLDSLRRH 264 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~--~~~~~r~~ 264 (426)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.+. .....+++
T Consensus 4 ~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 4 ALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 4899999999975 3699999999999999999999999999999999999999999999999998321 22345678
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
||||||++.+|+. ||+||+.|+......+ .+++.++++.+++. ...+..+.+|||||||||+||
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-----------~~~~r~~~~LSGGq~QRValA 150 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-----------ELAGRYPHELSGGQQQRAALA 150 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG-----------GGTTSCGGGSCHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-----------hHhcCChhhCCHHHHHHHHHH
Confidence 9999999999965 9999999875432222 23445555555544 444556689999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|||+.+|++||||||||+||+.++..+.+.+.++. .+.|+|+|||+++.+. .||||++|++|++++.|+++++++++
T Consensus 151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 99999999999999999999999999998877653 4789999999999885 79999999999999999999888776
Q ss_pred chhh
Q 014366 417 DSLV 420 (426)
Q Consensus 417 ~~l~ 420 (426)
...+
T Consensus 231 ~~~~ 234 (359)
T 3fvq_A 231 ADLD 234 (359)
T ss_dssp SCHH
T ss_pred ccHH
Confidence 5443
No 23
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.9e-54 Score=432.05 Aligned_cols=220 Identities=30% Similarity=0.476 Sum_probs=188.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+|+|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. ++.||
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 78 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEE
Confidence 4899999999975 3699999999999999999999999999999999999999999999999999877654 46799
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
||||++.+|+. ||+||+.|+......+. +++.++++.+++ +...++.+.+||||||||++||||
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-----------~~~~~r~p~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL-----------AHLLDRKPKALSGGQRQRVAIGRT 147 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTC-----------GGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------chhhcCChhHCCHHHHHHHHHHHH
Confidence 99999999975 99999988643222233 234444454444 444555678999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcch
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
|+.+|++||||||||+||+.++..+.+.|+++. + +.|+|+||||++.+. .||||++|++|++++.|+++++++++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~ 227 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCcc
Confidence 999999999999999999999999999999884 3 789999999998875 7999999999999999999988876654
Q ss_pred hhh
Q 014366 419 LVS 421 (426)
Q Consensus 419 l~~ 421 (426)
.+.
T Consensus 228 ~~v 230 (381)
T 3rlf_A 228 RFV 230 (381)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 24
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=5.9e-54 Score=411.78 Aligned_cols=216 Identities=27% Similarity=0.362 Sum_probs=188.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..++++.++
T Consensus 11 ~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 11 LLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred eEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 5999999999975 36999999999999999999999999999999999999999999999999999998888888999
Q ss_pred EEecCCCC-CcccHHHHHcCCCCCC--CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc
Q 014366 267 LVSQDITL-FSGTVAENIGYRDLMT--KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 267 ~v~Q~~~l-f~~ti~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
|++|++.+ |+.||+||+.++.... ....+++.++++.+++.+ .......+||||||||++|||||+
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA-----------LAQRDYRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST-----------TTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh-----------HhcCCcccCCHHHHHHHHHHHHHh
Confidence 99999987 4679999998764321 122345555666555433 334456799999999999999999
Q ss_pred C------CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 344 Q------NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 344 ~------~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
. +|++|||||||||||+.++..+.+.|+++.+ ++|+|+|||+++.+. .||||++|++|++++.|+++++.+
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 9 9999999999999999999999999998853 469999999999986 799999999999999999988775
Q ss_pred C
Q 014366 415 N 415 (426)
Q Consensus 415 ~ 415 (426)
+
T Consensus 238 ~ 238 (266)
T 4g1u_C 238 A 238 (266)
T ss_dssp H
T ss_pred c
Confidence 4
No 25
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-53 Score=404.16 Aligned_cols=220 Identities=23% Similarity=0.361 Sum_probs=184.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH-hcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL-RRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~-r~~i 265 (426)
.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..++ ++.+
T Consensus 6 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred eEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 5899999999975 369999999999999999999999999999999999999999999999999987776554 4569
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
+||||++.+|+. |++||+.++.... .+.++..+. +.+.++.++ |++...++++.+||||||||++|||||+.
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNR-KDKEGIKRD-----LEWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTC-CCSSHHHHH-----HHHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcC-CCHHHHHHH-----HHHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999999876 9999998853111 111111111 122333332 34455666788999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHH-HhcCEEEEEeCCEEEEeccccccccC
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+ ..|||+++|++|++++.|+++++.++
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999999885 578999999999877 47999999999999999998877654
No 26
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=6.6e-54 Score=410.46 Aligned_cols=217 Identities=32% Similarity=0.433 Sum_probs=184.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC--CCCHHHHhcc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ--NIRLDSLRRH 264 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~--~~~~~~~r~~ 264 (426)
.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ......+|++
T Consensus 24 ~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 5999999999965 35999999999999999999999999999999999999999999999999985 3344566788
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCC-CCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRD-LMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~-~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
++||||++.+|+. |++||+.++. .....+. +++.++++.++ ++...+..+.+||||||||++|
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------L~~~~~~~~~~LSgGqkQRv~l 170 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVG-----------LKDKAHAYPDSLSGGQAQRVAI 170 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTT-----------CGGGTTSCGGGSCHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-----------CchHhcCChhhCCHHHHHHHHH
Confidence 9999999998876 9999998742 1112222 23334444444 4444556678999999999999
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
||||+.+|++|||||||++||+.+++.+.+.|+++. +++|||++||+++.+. .||+|++|++|++++.|+++++.+++
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999999999874 4789999999999986 79999999999999999998776543
No 27
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.4e-53 Score=399.46 Aligned_cols=209 Identities=30% Similarity=0.366 Sum_probs=178.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH---Hh-
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS---LR- 262 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~---~r- 262 (426)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..+ +|
T Consensus 4 ~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 4 ILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 4899999999975 36999999999999999999999999999999999999999999999999998776543 33
Q ss_pred cceEEEecCCCCCc-ccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 263 RHVGLVSQDITLFS-GTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
++++||||++.+|+ .|++||+.++......+. +++.++++.+ |++.....++.+||||||||++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv~ 150 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL-----------GLGDKLSRKPYELSGGEQQRVA 150 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT-----------TCTTCTTCCGGGSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHHH
Confidence 67999999999886 499999987421111121 2233333333 4455556677899999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEEeCCEEEEecc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNR 408 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~ 408 (426)
|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+..||++++|++|++++.|+
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999999884 4789999999999887899999999999999885
No 28
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-53 Score=407.79 Aligned_cols=217 Identities=31% Similarity=0.418 Sum_probs=184.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC----------C
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN----------I 256 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~----------~ 256 (426)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .
T Consensus 6 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 4999999999975 359999999999999999999999999999999999999999999999999861 3
Q ss_pred CH---HHHhcceEEEecCCCCCcc-cHHHHHcCCC-CCCCCC----HHHHHHHHHHhchHHH-HHhcCCCcccccCCCCC
Q 014366 257 RL---DSLRRHVGLVSQDITLFSG-TVAENIGYRD-LMTKID----MERVEHTARTANADEF-VRTLPQGYNTHIGPRGS 326 (426)
Q Consensus 257 ~~---~~~r~~i~~v~Q~~~lf~~-ti~eni~~~~-~~~~~~----~~~~~~~~~~~~l~~~-~~~lp~g~~t~~~~~g~ 326 (426)
+. ..+|++++||||++.+|+. ||+||+.++. .....+ .+++.++++.+++.++ .+ .++.
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~ 152 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG-----------KYPV 152 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT-----------SCGG
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhc-----------CCcc
Confidence 33 3457789999999998876 9999998742 111122 2345556666666555 43 3557
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEE
Q 014366 327 SLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLE 404 (426)
Q Consensus 327 ~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~ 404 (426)
+||||||||++|||||+.+|++||||||||+||+.+++.+.+.|+++. +++|||+|||+++.+. .||||++|++|+++
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999875 4789999999999986 79999999999999
Q ss_pred EeccccccccCc
Q 014366 405 ELNRSTLLGSNH 416 (426)
Q Consensus 405 e~g~~~~l~~~~ 416 (426)
+.|+++++.+++
T Consensus 233 ~~g~~~~~~~~~ 244 (262)
T 1b0u_A 233 EEGDPEQVFGNP 244 (262)
T ss_dssp EEECHHHHHHSC
T ss_pred EeCCHHHHHhCc
Confidence 999988776543
No 29
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-53 Score=423.07 Aligned_cols=217 Identities=33% Similarity=0.509 Sum_probs=186.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. ++++|
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG 78 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEE
Confidence 4899999999965 3599999999999999999999999999999999999999999999999999876543 57899
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
||||++.+|+. ||+||+.|+......+. +++.++++.+++.++ ....+.+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~r~~~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNL-----------LDRKPTQLSGGQQQRVALARA 147 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGG-----------TTSCGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHHH
Confidence 99999999965 99999998643222222 345555555555444 444567999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcch
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
|+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|++++.|+++++++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 227 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKN 227 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCccc
Confidence 9999999999999999999999999999998743 789999999999874 7999999999999999999988776544
No 30
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3e-53 Score=404.48 Aligned_cols=216 Identities=28% Similarity=0.387 Sum_probs=184.0
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
.+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....+|++
T Consensus 13 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp -CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 356999999999964 369999999999999999999999999999999999999999999999999876 45667889
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
++||||++.+|+. |++||+.++......+. +++.++++.+++.+ ....++.+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE-----------KIKDRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGG-----------GGGSBGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCch-----------HhcCChhhCCHHHHHHHHHH
Confidence 9999999998876 99999987421111122 23444555554443 34445689999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||+.+|++|||||||++||+.+++.+.+.|+++. +++|||++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999885 4789999999999986 599999999999999999887643
No 31
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.4e-53 Score=407.59 Aligned_cols=216 Identities=22% Similarity=0.309 Sum_probs=182.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH-HHhcce
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD-SLRRHV 265 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~-~~r~~i 265 (426)
.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .+|+++
T Consensus 7 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 7 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999975 3599999999999999999999999999999999999999999999999999876543 456789
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCC--CC-----------CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLM--TK-----------IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~--~~-----------~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
+||||++.+|+ .|++||+.++... .. .+.++.. ..+.+.++.+ |++...++++.+||||
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG 157 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSGG 157 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCHH
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH-----HHHHHHHHHc--CCchhhCCCchhCCHH
Confidence 99999999886 5999999875321 11 1111111 1122334443 5566667778899999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccc
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~ 409 (426)
||||++|||||+.+|++||||||||+||+.+++.+.+.|+++. +++|||++||+++.+. .||||++|++|++++.|++
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCH
Confidence 9999999999999999999999999999999999999999875 4789999999999885 7999999999999999998
Q ss_pred cc
Q 014366 410 TL 411 (426)
Q Consensus 410 ~~ 411 (426)
++
T Consensus 238 ~~ 239 (257)
T 1g6h_A 238 EE 239 (257)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 32
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2e-53 Score=422.01 Aligned_cols=217 Identities=29% Similarity=0.460 Sum_probs=185.7
Q ss_pred ccEEEEeEEEEe-CCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 186 GDVKFCNISFKY-ADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 186 ~~i~~~~v~~~y-~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
..|+++|++++| ++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .+++
T Consensus 13 ~~l~~~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 469999999999 54 359999999999999999999999999999999999999999999999999976553 4678
Q ss_pred eEEEecCCCCCcc-cHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 265 VGLVSQDITLFSG-TVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 265 i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
++||||++.+|+. ||+||+.|+......+ .+++.++++.+++.+ ..+..+.+||||||||++||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------~~~r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES-----------YANRFPHELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------HhcCCcccCCHHHHHHHHHH
Confidence 9999999999975 9999998753211222 233455555555444 44455689999999999999
Q ss_pred HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCc
Q 014366 340 RALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 340 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~ 416 (426)
|||+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|++++.|+++++.+++
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999998753 789999999999875 79999999999999999998887665
Q ss_pred c
Q 014366 417 D 417 (426)
Q Consensus 417 ~ 417 (426)
.
T Consensus 238 ~ 238 (355)
T 1z47_A 238 G 238 (355)
T ss_dssp S
T ss_pred c
Confidence 3
No 33
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=4.4e-53 Score=422.37 Aligned_cols=219 Identities=30% Similarity=0.495 Sum_probs=181.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. ++++|
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 86 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEE
Confidence 4999999999965 3599999999999999999999999999999999999999999999999999876543 56799
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
||||++.+|+. ||+||+.|+......+. +++.++++.+++. ......+.+||||||||++||||
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-----------~~~~r~~~~LSGGq~QRvalArA 155 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-----------ELLNRYPAQLSGGQRQRVAVARA 155 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-----------GGTTSCTTTCCSSCHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999965 99999999754322232 2344455555444 44455668999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcch
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
|+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|++++.|+++++++++..
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 235 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 235 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCccc
Confidence 9999999999999999999999999999998743 689999999999874 7999999999999999999988776544
Q ss_pred hh
Q 014366 419 LV 420 (426)
Q Consensus 419 l~ 420 (426)
.+
T Consensus 236 ~~ 237 (372)
T 1v43_A 236 VF 237 (372)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 34
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.2e-53 Score=423.11 Aligned_cols=217 Identities=35% Similarity=0.508 Sum_probs=185.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. +++++
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG 78 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEE
Confidence 4899999999964 3599999999999999999999999999999999999999999999999999876643 56899
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
||||++.+|+. ||+||+.|+......+. +++.++++.++ ++......+.+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~-----------L~~~~~r~~~~LSGGq~QRvalArA 147 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLH-----------IDKLLNRYPWQLSGGQQQRVAIARA 147 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT-----------CTTCTTCCGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CchHhhCChhhCCHHHHHHHHHHHH
Confidence 99999999975 99999988532112222 23444444444 4444555668999999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcch
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDS 418 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~ 418 (426)
|+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|++++.|+++++++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~ 227 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKY 227 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999998743 789999999998874 7999999999999999999988776543
No 35
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.8e-53 Score=423.16 Aligned_cols=218 Identities=32% Similarity=0.455 Sum_probs=185.3
Q ss_pred cEEEEeEEEEeCCCCCC--cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC---HHHH
Q 014366 187 DVKFCNISFKYADNMPL--VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR---LDSL 261 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~--~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~---~~~~ 261 (426)
.|+++||+++|++ .+ +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ....
T Consensus 3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 4899999999964 36 999999999999999999999999999999999999999999999999986521 2234
Q ss_pred hcceEEEecCCCCCcc-cHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 262 RRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 262 r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
++++|||||++.+|+. ||+||+.|+......+. +++.++++.+++.+ .....+.+||||||||+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~~~~~~LSGGq~QRv 149 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-----------VLNHFPRELSGAQQQRV 149 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHHH
Confidence 6789999999999975 99999998643322232 33445555555444 44455689999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccc
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
+|||||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|++++.|++++++
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998743 789999999999875 79999999999999999998887
Q ss_pred cCcc
Q 014366 414 SNHD 417 (426)
Q Consensus 414 ~~~~ 417 (426)
+++.
T Consensus 230 ~~p~ 233 (353)
T 1oxx_K 230 DNPV 233 (353)
T ss_dssp HSCS
T ss_pred hCcc
Confidence 6653
No 36
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=9.7e-53 Score=403.62 Aligned_cols=214 Identities=27% Similarity=0.404 Sum_probs=184.2
Q ss_pred cEEEEeEEEEeCCCC---CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc
Q 014366 187 DVKFCNISFKYADNM---PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~ 263 (426)
.|+++||+|+|+.+. +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .+|+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhh
Confidence 388999999997222 3599999999999999999999999999999999999999999999999998642 6678
Q ss_pred ceEEEecCC--CCCcccHHHHHcCCCCC---CCCCHHHHHHHHHHhchH--HHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 264 HVGLVSQDI--TLFSGTVAENIGYRDLM---TKIDMERVEHTARTANAD--EFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 264 ~i~~v~Q~~--~lf~~ti~eni~~~~~~---~~~~~~~~~~~~~~~~l~--~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
+++||||++ .+++.|++||+.++... .....+++.++++.+++. ++.++ ...+||||||||+
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~~~LSgGq~qRv 147 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR-----------VPFFLSGGEKRRV 147 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTC-----------CGGGSCHHHHHHH
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccC-----------ChhhCCHHHHHHH
Confidence 899999996 45677999999876321 112345677788887776 65544 3479999999999
Q ss_pred HHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 337 AIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 337 ~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
+|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|||++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999884 5789999999999886 699999999999999998876654
No 37
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.1e-53 Score=421.38 Aligned_cols=216 Identities=32% Similarity=0.487 Sum_probs=185.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ . +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.+.+. .+++++|
T Consensus 2 l~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF 76 (348)
T ss_dssp EEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred EEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence 789999999964 4 9999999999999999999999999999999999999999999999999976543 4678999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCC-CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTK-IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
|||++.+|+. ||+||+.|+..... ...+++.++++.+++.++ .+.++.+||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~~~~~~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL-----------LDRNPLTLSGGEQQRVALARALVTN 145 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTT-----------TTSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999975 99999987532101 112555666666655444 4445679999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccCcchh
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSNHDSL 419 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~~~~l 419 (426)
|++||||||||+||+.+++.+.+.|+++. .+.|+|+|||+++.+. .||||++|++|++++.|+++++++++...
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~ 222 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEG 222 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTT
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccH
Confidence 99999999999999999999999999874 3789999999998874 79999999999999999999888765443
No 38
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=6.2e-53 Score=421.89 Aligned_cols=218 Identities=26% Similarity=0.450 Sum_probs=185.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC------CCHHH
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN------IRLDS 260 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~------~~~~~ 260 (426)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.+ .+.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~-- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP-- 78 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--
Confidence 4899999999965 359999999999999999999999999999999999999999999999999865 443
Q ss_pred HhcceEEEecCCCCCc-ccHHHHHcCCCCCCCCCH----HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 261 LRRHVGLVSQDITLFS-GTVAENIGYRDLMTKIDM----ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
.+++||||||++.+|+ .||+||+.|+......+. +++.++++.+++. ......+.+||||||||
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-----------~~~~r~~~~LSGGq~QR 147 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-----------ELLNRKPRELSGGQRQR 147 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-----------GGTTCCGGGSCHHHHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hHhcCCcccCCHHHHHH
Confidence 3578999999999996 499999988532112222 2344455555444 44455668999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccc
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l 412 (426)
++|||||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|++++.|+++++
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998753 789999999999885 7999999999999999999988
Q ss_pred ccCcchh
Q 014366 413 GSNHDSL 419 (426)
Q Consensus 413 ~~~~~~l 419 (426)
++++...
T Consensus 228 ~~~p~~~ 234 (372)
T 1g29_1 228 YDKPANT 234 (372)
T ss_dssp HHSCSBH
T ss_pred HhCcccH
Confidence 7765443
No 39
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=9.7e-53 Score=397.42 Aligned_cols=210 Identities=27% Similarity=0.395 Sum_probs=178.6
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
|+++|++++|++ +|+|+||++++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ..+++++|
T Consensus 2 l~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF 74 (240)
T ss_dssp CEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBC
T ss_pred EEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEE
Confidence 689999999953 59999999999 999999999999999999999999999999999999987533 34678999
Q ss_pred EecCCCCCcc-cHHHHHcCCCCCCCCC--HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 268 VSQDITLFSG-TVAENIGYRDLMTKID--MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 268 v~Q~~~lf~~-ti~eni~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
|||++.+|+. |++||+.++......+ .+++.++++.+ |++......+.+||||||||++|||||+.
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL-----------GIAHLLDRKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTT-----------TCTTTTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHc-----------CCHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999876 9999999864322111 12233333333 44445566678999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
+|++|||||||++||+.+++.+.+.|+++.+ ++|||++||+++.+. .||++++|++|++++.|+++++.++
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999998742 789999999999875 7999999999999999998877544
No 40
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=7.7e-53 Score=406.57 Aligned_cols=216 Identities=23% Similarity=0.321 Sum_probs=182.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC--CCCHHHHhcc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ--NIRLDSLRRH 264 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~--~~~~~~~r~~ 264 (426)
.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..+...+|++
T Consensus 21 ~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 21 LIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred eEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 5999999999975 36999999999999999999999999999999999999999999999999987 6667778889
Q ss_pred eEEEecCCCC-Ccc--cHHHHHcCCCCC-----CCCCH---HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHH
Q 014366 265 VGLVSQDITL-FSG--TVAENIGYRDLM-----TKIDM---ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQR 333 (426)
Q Consensus 265 i~~v~Q~~~l-f~~--ti~eni~~~~~~-----~~~~~---~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqk 333 (426)
++||||++.+ |.. |++||+.++... ..... +++.++++.+ |++...+.++.+||||||
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGqk 167 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLV-----------GMSAKAQQYIGYLSTGEK 167 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHT-----------TCGGGTTSBGGGSCHHHH
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHH
Confidence 9999999865 443 999999886311 00111 2233334443 444455667789999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceE--EEeccChHHHH-hcCEEEEEeCCEEEEeccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTV--LVIAHHLETVM-MAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tv--i~itH~~~~~~-~~D~i~vl~~G~i~e~g~~ 409 (426)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|| |+|||+++.+. .||+|++|++|++++.|++
T Consensus 168 qRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 247 (279)
T 2ihy_A 168 QRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAV 247 (279)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998753 7899 99999999884 7999999999999999998
Q ss_pred cccccC
Q 014366 410 TLLGSN 415 (426)
Q Consensus 410 ~~l~~~ 415 (426)
+++.++
T Consensus 248 ~~~~~~ 253 (279)
T 2ihy_A 248 EDILTS 253 (279)
T ss_dssp HHHCSH
T ss_pred HHHhcc
Confidence 877654
No 41
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.2e-51 Score=391.81 Aligned_cols=209 Identities=25% Similarity=0.331 Sum_probs=184.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+|+ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++...+..+++++++
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 4899999986 4899999999999999999999999999999999999999 99999999998777778888999
Q ss_pred EEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 267 LVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 267 ~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
|+||++.+|+. |++||+.++... ..+.+++.++++.+++.++ .+.++.+||||||||++|||||+.+
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHD-KTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSS-TTCHHHHHHHHHHTTCGGG-----------TTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCccCCCCcHHHHHHHhhcc-CCcHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHHcC
Confidence 99999998865 999999986421 1235556666666665443 3445689999999999999999999
Q ss_pred CC-------EEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHH-HhcCEEEEEeCCEEEEecccccccc
Q 014366 346 SS-------VLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETV-MMAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 346 p~-------illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~-~~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|+ +|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+ ..||++++|++|++++.|+++++.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999999884 578999999999998 5899999999999999999887765
No 42
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.3e-51 Score=399.67 Aligned_cols=209 Identities=25% Similarity=0.424 Sum_probs=174.2
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
.+.|+++||+|.+ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +
T Consensus 38 ~~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~ 100 (290)
T 2bbs_A 38 DDSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 100 (290)
T ss_dssp ------------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------C
T ss_pred CceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------E
Confidence 3469999999864 3599999999999999999999999999999999999999999999988 4
Q ss_pred eEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 265 VGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 265 i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
++|+||++.+|+.|++||+. +.. .......++++..++.++++.+|.++++.+++++.+||||||||++|||||++
T Consensus 101 i~~v~Q~~~l~~~tv~enl~-~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~ 176 (290)
T 2bbs_A 101 ISFCSQNSWIMPGTIKENII-GVS---YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK 176 (290)
T ss_dssp EEEECSSCCCCSSBHHHHHH-TTC---CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHS
T ss_pred EEEEeCCCccCcccHHHHhh-Ccc---cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHC
Confidence 99999999999899999998 432 23344566778889999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHH-HHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEecccccccc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAV-DRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
+|++||||||||+||+.+++.+.+.+ +++.+++|||++||+++.+..||++++|++|++++.|+++++..
T Consensus 177 ~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 177 DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 99999999999999999999999874 45555789999999999888899999999999999999887654
No 43
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.1e-51 Score=392.88 Aligned_cols=212 Identities=24% Similarity=0.340 Sum_probs=171.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCccEEEEcCEeCCCCCHHHH-hc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDSL-RR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~--~~p~~G~I~~~g~~i~~~~~~~~-r~ 263 (426)
.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+.... +.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 4899999999975 3699999999999999999999999999999999999 89999999999999987776554 45
Q ss_pred ceEEEecCCCCCcc-cHHHHHcCCCC---CCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCC-CChHHHH
Q 014366 264 HVGLVSQDITLFSG-TVAENIGYRDL---MTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSS-LSGGQRQ 334 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eni~~~~~---~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~-LSgGqkQ 334 (426)
.++|+||++.+|+. |++||+.++.. ..... .+++.++++.+++. .........+ |||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----------~~~~~~~~~~~LSgGqkQ 150 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWD----------ESYLSRYLNEGFSGGEKK 150 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCC----------GGGGGSBTTCC----HHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCC----------hhHhcCCcccCCCHHHHH
Confidence 69999999999875 99999976421 00011 12233344444331 1233344567 9999999
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-h-cCEEEEEeCCEEEEecccc
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-M-AKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~-~D~i~vl~~G~i~e~g~~~ 410 (426)
|++|||||+++|++||||||||+||+.+++.+.+.|+++. +++|||+|||+++.+. . |||+++|++|++++.|+++
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 9999999999999999999999999999999999999985 4789999999999887 4 5999999999999999876
No 44
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1e-50 Score=386.61 Aligned_cols=203 Identities=27% Similarity=0.378 Sum_probs=171.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++||+++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++++++
T Consensus 4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 48999999999722 3699999999999999999999999999999999999999999998 256799
Q ss_pred EEecCCCCC-cccHHHHHcCCCCCC-C----CC---HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 267 LVSQDITLF-SGTVAENIGYRDLMT-K----ID---MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 267 ~v~Q~~~lf-~~ti~eni~~~~~~~-~----~~---~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
||||++.+| ..|++||+.++.... . .. .+++.++++.+++. ...+.++.+||||||||++
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-----------HLAKREFTSLSGGQRQLIL 138 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-----------GGTTSBGGGSCHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-----------HHhcCChhhCCHHHHHHHH
Confidence 999999987 569999998853110 0 11 23344555555443 3444567899999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEEEecccccccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
|||||+.+|++||||||||+||+.+++.+.+.|+++. + ++|+|++||+++.+. .||++++|++|+ ++.|+++++.+
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 9999999999999999999999999999999999885 3 789999999999884 799999999999 99999887764
Q ss_pred C
Q 014366 415 N 415 (426)
Q Consensus 415 ~ 415 (426)
+
T Consensus 218 ~ 218 (253)
T 2nq2_C 218 S 218 (253)
T ss_dssp H
T ss_pred c
Confidence 4
No 45
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=8.4e-51 Score=390.30 Aligned_cols=218 Identities=21% Similarity=0.284 Sum_probs=177.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCccEEEEcCEeCCCCCHHHH-hc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL--YDPLSGCILVDDHDVQNIRLDSL-RR 263 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~--~~p~~G~I~~~g~~i~~~~~~~~-r~ 263 (426)
.|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+...+ +.
T Consensus 20 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 20 MLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 5999999999964 3699999999999999999999999999999999999 57999999999999987766554 44
Q ss_pred ceEEEecCCCCCcc-cHHHHHcCCC-------CCCCCCHHHHHHHHHHhchHHHHHhcCCCccc-ccCCCCC-CCChHHH
Q 014366 264 HVGLVSQDITLFSG-TVAENIGYRD-------LMTKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGS-SLSGGQR 333 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~-ti~eni~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~~~g~-~LSgGqk 333 (426)
.++||||++.+|+. |++||+.++. .....+.++..+ .+.+.++.+ |+++ ....... +||||||
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHHH
Confidence 69999999998876 9999986531 000112211111 122333333 4543 3344454 5999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHh--cCEEEEEeCCEEEEecccc
Q 014366 334 QRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMM--AKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 334 QRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~--~D~i~vl~~G~i~e~g~~~ 410 (426)
||++|||||+.+|++||||||||+||+.+++.+.+.|+++. +++|||++||+++.+.. |||+++|++|++++.|+++
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 250 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 250 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTT
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999885 36899999999998864 8999999999999999987
Q ss_pred ccc
Q 014366 411 LLG 413 (426)
Q Consensus 411 ~l~ 413 (426)
++.
T Consensus 251 ~~~ 253 (267)
T 2zu0_C 251 LVK 253 (267)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 46
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5e-51 Score=390.52 Aligned_cols=208 Identities=19% Similarity=0.321 Sum_probs=178.3
Q ss_pred EEEEeEEEEeCCC--CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 188 VKFCNISFKYADN--MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 188 i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
|+++|++++|++. .+++|+|+||+++ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++... .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 1359999999999 9999999999999999999999999 9999999999998654 23 6789
Q ss_pred E-EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHHHHHHHHHHhc
Q 014366 266 G-LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 266 ~-~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
+ |+||++.+ ..|++||+.++........+++.++++..+ ++ ...+.++.+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALK-----------LGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTT-----------CCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcC-----------CChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 889999998743211223455555555544 44 4455667899999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcC-EEEEEeCCEEEEecccccccc
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAK-RVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D-~i~vl~~G~i~e~g~~~~l~~ 414 (426)
.+|++|||||||++||+.+++.+.+.|+++.+ |+|++||+++.+. .|| ++++|++|++++.|+++++.+
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999998754 9999999999875 799 999999999999999887764
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=9.4e-50 Score=370.39 Aligned_cols=197 Identities=19% Similarity=0.336 Sum_probs=166.0
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..|+++||+++|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .+++.+
T Consensus 9 ~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred ceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 46999999999964 5999999999999999999999999999999999999999999999999875 357889
Q ss_pred EEEecCCCCCcc-cHHHHHcCCCCCC--CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 266 GLVSQDITLFSG-TVAENIGYRDLMT--KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 266 ~~v~Q~~~lf~~-ti~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+||||++.+|+. |++||+.++.... ....+++.++++.+ |++.. ++++.+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV-----------EVLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHT-----------TCCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHc-----------CCCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999876 9999998742110 11234455555444 44455 567789999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCCEE
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G~i 403 (426)
+.+|++|||||||++||+.+++.+.+.|+++. +++|||++||+++.+. .||+++++ .|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999875 3689999999999886 57887644 5665
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.1e-41 Score=353.38 Aligned_cols=201 Identities=26% Similarity=0.368 Sum_probs=166.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+ +..++
T Consensus 287 ~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~ 350 (538)
T 1yqt_A 287 LVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVA 350 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEE
T ss_pred EEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEE
Confidence 5899999999964 3699999999999999999999999999999999999999999975 23699
Q ss_pred EEecCCCC-CcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 267 LVSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 267 ~v~Q~~~l-f~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
|+||++.. +..||.||+...........+.+.++++.. |+......+..+||||||||++|||||+.+
T Consensus 351 ~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGGe~qrv~lAraL~~~ 419 (538)
T 1yqt_A 351 YKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPL-----------GIIDLYDREVNELSGGELQRVAIAATLLRD 419 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTT-----------TCGGGTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred EEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 99999976 456999988542000000122233333332 444455667789999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeC--CEEEEecccccccc
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDN--GKLEELNRSTLLGS 414 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~--G~i~e~g~~~~l~~ 414 (426)
|++|||||||++||+.++..+.+.|+++. .+.|||+|||+++.+. .||||++|++ |+++..|+|+++.+
T Consensus 420 p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999874 3789999999999986 7999999996 78888999987664
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.2e-41 Score=355.46 Aligned_cols=202 Identities=25% Similarity=0.363 Sum_probs=167.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.++++|++++|++ ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+ +.+++
T Consensus 357 ~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~ 420 (607)
T 3bk7_A 357 LVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVA 420 (607)
T ss_dssp EEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEE
T ss_pred EEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEE
Confidence 5899999999964 3699999999999999999999999999999999999999999975 23699
Q ss_pred EEecCCCC-CcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 267 LVSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 267 ~v~Q~~~l-f~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
|+||++.+ ++.||.||+...........+.+.++++.. |++.....+..+||||||||++|||||+.+
T Consensus 421 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGGe~QRv~iAraL~~~ 489 (607)
T 3bk7_A 421 YKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL-----------GIIDLYDRNVEDLSGGELQRVAIAATLLRD 489 (607)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred EEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 99999876 466999998642000000122233333333 344445566789999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeC--CEEEEeccccccccC
Q 014366 346 SSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDN--GKLEELNRSTLLGSN 415 (426)
Q Consensus 346 p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~--G~i~e~g~~~~l~~~ 415 (426)
|++|||||||++||+.++..+.+.|+++. .+.|+|+||||++.+. .||||++|++ |++...|+|+++.+.
T Consensus 490 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 99999999999999999999999999874 4789999999999986 7999999986 888889999877653
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.9e-40 Score=345.44 Aligned_cols=201 Identities=24% Similarity=0.350 Sum_probs=164.4
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..++++|++++|++ ..+++.||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ..+
T Consensus 268 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred ceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 35899999999975 368888999999999999999999999999999999999999998764 358
Q ss_pred EEEecCCCC-CcccHHHHHcCCCCCC-CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc
Q 014366 266 GLVSQDITL-FSGTVAENIGYRDLMT-KIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY 343 (426)
Q Consensus 266 ~~v~Q~~~l-f~~ti~eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~ 343 (426)
+|+||+... +..|++||+.+..... ......+.++++..++ ....+..+.+|||||||||+|||||+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNL-----------HRLLESNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTG-----------GGCTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCC-----------HHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999865 4679999997532111 1122333444444444 44455667899999999999999999
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeC--CEEEEecccccc
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDN--GKLEELNRSTLL 412 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~--G~i~e~g~~~~l 412 (426)
.+|++|||||||++||+.++..+.+.|+++. .+.|||+||||++.+. .||||++|++ |.....+++..+
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 9999999999999999999999999999874 4789999999999986 6999999986 556666666543
No 51
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=6.9e-40 Score=358.64 Aligned_cols=200 Identities=26% Similarity=0.417 Sum_probs=151.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceE
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVG 266 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~ 266 (426)
.|+++|++|+|++..+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|. ..++
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence 59999999999753356999999999999999999999999999999999999999999999862 1356
Q ss_pred EEecCCCC-----CcccHHH------------------------------------------------------------
Q 014366 267 LVSQDITL-----FSGTVAE------------------------------------------------------------ 281 (426)
Q Consensus 267 ~v~Q~~~l-----f~~ti~e------------------------------------------------------------ 281 (426)
|++|++.. ...|+++
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 66655421 1123333
Q ss_pred ------HHcCCCC---------------------------------------CCCCCHHHHHHHHHHhchHHHHHhcCCC
Q 014366 282 ------NIGYRDL---------------------------------------MTKIDMERVEHTARTANADEFVRTLPQG 316 (426)
Q Consensus 282 ------ni~~~~~---------------------------------------~~~~~~~~~~~~~~~~~l~~~~~~lp~g 316 (426)
|+.++.. ......+++.+.++..++.+..
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~------ 893 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEI------ 893 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHH------
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchh------
Confidence 3322110 0001123334444444443211
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEE
Q 014366 317 YNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRV 395 (426)
Q Consensus 317 ~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i 395 (426)
....++.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|||+|||+++.+. .|||+
T Consensus 894 ---~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrV 968 (986)
T 2iw3_A 894 ---VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEV 968 (986)
T ss_dssp ---HHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEE
T ss_pred ---hcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEE
Confidence 023356799999999999999999999999999999999999999999999876 469999999999985 79999
Q ss_pred EEEeCCEEEEecc
Q 014366 396 FLLDNGKLEELNR 408 (426)
Q Consensus 396 ~vl~~G~i~e~g~ 408 (426)
++|++|++++.|+
T Consensus 969 ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 969 WAVKDGRMTPSGH 981 (986)
T ss_dssp ECCBTTBCCC---
T ss_pred EEEECCEEEEeCC
Confidence 9999999987774
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-39 Score=342.80 Aligned_cols=201 Identities=23% Similarity=0.355 Sum_probs=164.6
Q ss_pred EeEEEEeCCCCCCcceeeeEEEeCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 191 CNISFKYADNMPLVLDQLNLHIRAG-----ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~~G-----e~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
++++|+|++. ..+++++||++++| |+++|+||||||||||+++|+|+++|++|+. +. +..+
T Consensus 350 ~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 350 ASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred cceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 5678899754 35899999999999 8899999999999999999999999999962 11 3469
Q ss_pred EEEecCCCC-CcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 266 GLVSQDITL-FSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 266 ~~v~Q~~~l-f~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
+|+||+... |+.|+++|+.........+.+...++++..++ .........+||||||||++|||||+.
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l-----------~~~~~~~~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRI-----------DDIIDQEVQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTS-----------TTTSSSBSSSCCHHHHHHHHHHHHTTS
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999764 57799999854221111233444445554443 344555678999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeC--CEEEEeccccccccCc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDN--GKLEELNRSTLLGSNH 416 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~--G~i~e~g~~~~l~~~~ 416 (426)
+|++|||||||++||+.++..+.+.|+++. .+.|+|+||||++.+. .||||++|++ |+++..|+|+++.+..
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~ 561 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGC 561 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhhh
Confidence 999999999999999999999999999874 3789999999999986 6999999996 8999999998887653
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2e-39 Score=343.41 Aligned_cols=197 Identities=25% Similarity=0.346 Sum_probs=157.2
Q ss_pred cEEE--------EeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE---------EEc
Q 014366 187 DVKF--------CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI---------LVD 249 (426)
Q Consensus 187 ~i~~--------~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I---------~~~ 249 (426)
.|++ +|++++|++. ..+|+++| ++++||+++|+||||||||||+|+|+|+++|++|++ .++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~ 160 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN-AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTT
T ss_pred eEEEecCCccccCCeEEEECCC-CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeC
Confidence 3788 8999999753 24899999 999999999999999999999999999999999996 345
Q ss_pred CEeCCCCCHH--HHhcceEEEecCCC----CCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCC
Q 014366 250 DHDVQNIRLD--SLRRHVGLVSQDIT----LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGP 323 (426)
Q Consensus 250 g~~i~~~~~~--~~r~~i~~v~Q~~~----lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~ 323 (426)
|.++...... ..+..+++++|... ++.+|++||+..... .+++.++++..++.+. .+.
T Consensus 161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~-----~~~~~~~L~~lgL~~~-----------~~~ 224 (607)
T 3bk7_A 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE-----VGKFEEVVKELELENV-----------LDR 224 (607)
T ss_dssp TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC-----SSCHHHHHHHTTCTTG-----------GGS
T ss_pred CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHH-----HHHHHHHHHHcCCCch-----------hCC
Confidence 6544321111 11345889998754 334599999864211 1334556666655443 344
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCC
Q 014366 324 RGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNG 401 (426)
Q Consensus 324 ~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G 401 (426)
...+||||||||++|||||+.+|++||||||||+||+.++..+.+.|+++. ++.|+|+||||++.+. .||||++|+++
T Consensus 225 ~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp BGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 567999999999999999999999999999999999999999999999885 4789999999999886 69999999864
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=7.8e-39 Score=344.30 Aligned_cols=207 Identities=22% Similarity=0.353 Sum_probs=139.5
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHH---------------------HHHhcCCCCC-------ccEEEEcCEeC
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLA---------------------KLLLRLYDPL-------SGCILVDDHDV 253 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl---------------------~ll~g~~~p~-------~G~I~~~g~~i 253 (426)
..+|+||||+|++||++||+||||||||||+ +++.|+.+|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3599999999999999999999999999998 8999999998 45566666554
Q ss_pred CCCCHHHHhcceEEEecCCCC-------------------C-cccHHHHHcCCCCCCCCC-HHH-----HHHHHHHhchH
Q 014366 254 QNIRLDSLRRHVGLVSQDITL-------------------F-SGTVAENIGYRDLMTKID-MER-----VEHTARTANAD 307 (426)
Q Consensus 254 ~~~~~~~~r~~i~~v~Q~~~l-------------------f-~~ti~eni~~~~~~~~~~-~~~-----~~~~~~~~~l~ 307 (426)
.. ..++.+++|+|.+.+ | ..|++||+.+........ ..+ ..++.+..
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 32 124456666665432 2 358999997742111000 000 11111221
Q ss_pred HHHHhcCCCcccc-cCCCCCCCChHHHHHHHHHHHhcCCCC--EEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEec
Q 014366 308 EFVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIA 383 (426)
Q Consensus 308 ~~~~~lp~g~~t~-~~~~g~~LSgGqkQRl~iARal~~~p~--illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~it 383 (426)
+.++.+ |++.. .+....+||||||||++|||||+.+|+ +|||||||++||+.+...+.+.|+++. ++.|||+||
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 223333 45433 466788999999999999999999998 999999999999999999999999885 478999999
Q ss_pred cChHHHHhcCEEEEE------eCCEEEEeccccccccCcc
Q 014366 384 HHLETVMMAKRVFLL------DNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 384 H~~~~~~~~D~i~vl------~~G~i~e~g~~~~l~~~~~ 417 (426)
|+++.+..||||++| ++|++++.|+++++.+++.
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 999988889999999 8999999999988776543
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.4e-39 Score=339.05 Aligned_cols=193 Identities=27% Similarity=0.364 Sum_probs=152.7
Q ss_pred EeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE---------EEcCEeCCCCCHHH-
Q 014366 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI---------LVDDHDVQNIRLDS- 260 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I---------~~~g~~i~~~~~~~- 260 (426)
+||+|+|++. ..+++++| +|++||+++|+||||||||||+|+|+|+++|++|++ .++|.++.......
T Consensus 25 ~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~ 102 (538)
T 1yqt_A 25 EDCVHRYGVN-AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102 (538)
T ss_dssp CCEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHH
T ss_pred cCcEEEECCc-cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHH
Confidence 5999999753 24899999 999999999999999999999999999999999995 34554432211111
Q ss_pred -HhcceEEEecCCCCC----cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 261 -LRRHVGLVSQDITLF----SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 261 -~r~~i~~v~Q~~~lf----~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
.+..+++++|+...+ .+|+.||+.... ..+++.++++.+++ +........+||||||||
T Consensus 103 ~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~-----~~~~~~~~l~~lgl-----------~~~~~~~~~~LSgGekQR 166 (538)
T 1yqt_A 103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD-----ETGKLEEVVKALEL-----------ENVLEREIQHLSGGELQR 166 (538)
T ss_dssp TTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC-----SSSCHHHHHHHTTC-----------TTTTTSBGGGCCHHHHHH
T ss_pred HHhhhhhhhhhhhhhcchhhhccHHHHHhhhh-----HHHHHHHHHHHcCC-----------ChhhhCChhhCCHHHHHH
Confidence 124588999976543 358999885321 11234555555554 333445568999999999
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHH-hcCEEEEEeCC
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVM-MAKRVFLLDNG 401 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~D~i~vl~~G 401 (426)
|+|||||+.+|++||||||||+||+.+.+.+.+.|+++. .+.|+|+||||++.+. .||||++|++|
T Consensus 167 v~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 167 VAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999999875 4789999999999886 69999999864
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=5.2e-37 Score=335.99 Aligned_cols=196 Identities=24% Similarity=0.336 Sum_probs=162.1
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
..+...|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+| |+| +|.+... +.++
T Consensus 434 ~~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp CEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred ceeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 46888899999975 359999999999999999999999999999999995 544 4543211 1247
Q ss_pred EEEecCC-CCC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhch-HHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 266 GLVSQDI-TLF-SGTVAENIGYRDLMTKIDMERVEHTARTANA-DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 266 ~~v~Q~~-~lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+|++|++ .++ ..|+.||+.+.. ... .+++.++++..++ .+..++. ..+||||||||++|||||
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~--~~~-~~~v~~~L~~lgL~~~~~~~~-----------~~~LSGGqkQRvaLArAL 563 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESG--VGT-KEAIKDKLIEFGFTDEMIAMP-----------ISALSGGWKMKLALARAV 563 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTC--SSC-HHHHHHHHHHTTCCHHHHHSB-----------GGGCCHHHHHHHHHHHHH
T ss_pred EEEcccccccccCCcHHHHHHHhh--cCH-HHHHHHHHHHcCCChhhhcCC-----------cccCCHHHHHHHHHHHHH
Confidence 8999986 455 459999997621 122 5677888888888 4555543 369999999999999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCEEE-Eeccccccc
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGKLE-ELNRSTLLG 413 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~-e~g~~~~l~ 413 (426)
+.+|++|||||||++||+.+++.+.+.|++ .+.|+|+|||+++.+. .||+|++|++|+++ ..|+++++.
T Consensus 564 ~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 564 LRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp HTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 999999999999999999999999999988 5789999999999986 79999999999997 578776554
No 57
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=7.6e-42 Score=332.29 Aligned_cols=225 Identities=15% Similarity=0.187 Sum_probs=184.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCC
Q 014366 121 GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADN 200 (426)
Q Consensus 121 g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~ 200 (426)
+..+-+.+.+|+.+..+ ..|+..++..+..++++..+.+|+.++++.+++...... ......+.|+++||+|+|+
T Consensus 38 ~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~~i~~~~vs~~y~-- 112 (305)
T 2v9p_A 38 AAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEG--SWKSILTFFNYQNIELITF-- 112 (305)
T ss_dssp TTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSC--CTHHHHHHHHHTTCCHHHH--
T ss_pred hcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--cccccCCeEEEEEEEEEcC--
Confidence 44566788888887666 489999999999999999999999999986554321111 1011123589999999997
Q ss_pred CCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHH
Q 014366 201 MPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVA 280 (426)
Q Consensus 201 ~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 280 (426)
.++|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.+|.+|++
T Consensus 113 -~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~ 170 (305)
T 2v9p_A 113 -INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLA 170 (305)
T ss_dssp -HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGT
T ss_pred -hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHH
Confidence 35999999999999999999999999999999999999 8988 3578999999999999
Q ss_pred H-HHcCCCCCCCCCHHHHHHHHHHhchHHHHHh-cCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCC
Q 014366 281 E-NIGYRDLMTKIDMERVEHTARTANADEFVRT-LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358 (426)
Q Consensus 281 e-ni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~L 358 (426)
| |+.++. +.++ ++.++++. +|+|++ |.+|||||||| |||++++|+||| ||+|
T Consensus 171 ~~ni~~~~---~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~L 224 (305)
T 2v9p_A 171 DTRAALVD---DATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNI 224 (305)
T ss_dssp TCSCEEEE---EECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESS
T ss_pred HHhhccCc---cccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCC
Confidence 8 998853 2222 34566777 888887 68999999999 999999999999 9999
Q ss_pred CHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEecccccc
Q 014366 359 DSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 359 D~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l 412 (426)
|+.+++.+.. +|||++.+..||+| +|++|++++.|+++++
T Consensus 225 D~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 225 DVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp CSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred CHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 9999988752 39999988899999 9999999999998876
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=4.4e-37 Score=330.72 Aligned_cols=201 Identities=25% Similarity=0.391 Sum_probs=147.9
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHh----------------------cCCCCCccEEEEcCEeCCCCCHH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL----------------------RLYDPLSGCILVDDHDVQNIRLD 259 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~----------------------g~~~p~~G~I~~~g~~i~~~~~~ 259 (426)
..+|+||||+|++||++||+||||||||||+++|+ |+.+ .+|.|.+++.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~-~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH-LDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG-CSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc-cCceeEeccccCCCCCCc
Confidence 45899999999999999999999999999998754 3333 356899999887643311
Q ss_pred HHh-----------------------------------------cceEEEecCCCCC-----------------------
Q 014366 260 SLR-----------------------------------------RHVGLVSQDITLF----------------------- 275 (426)
Q Consensus 260 ~~r-----------------------------------------~~i~~v~Q~~~lf----------------------- 275 (426)
... ...|+++|+..++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 100 0123333332221
Q ss_pred ----------cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 276 ----------SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 276 ----------~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
..|++||+.+..... ..++..+ .+..+ |+. ...++.+.+|||||||||+|||||+.
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~~--~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgG~~qrv~iAraL~~ 560 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASIP--KIKRKLE---------TLYDV--GLGYMKLGQPATTLSGGEAQRVKLAAELHR 560 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTCH--HHHHHHH---------HHHHT--TCTTSBTTCCGGGCCHHHHHHHHHHHHHHS
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHhh--hHHHHHH---------HHHHc--CCchhhccCCchhCCHHHHHHHHHHHHHhh
Confidence 347888887643210 1112222 22232 333 24567789999999999999999998
Q ss_pred CC---CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEE------eCCEEEEecccccccc
Q 014366 345 NS---SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLL------DNGKLEELNRSTLLGS 414 (426)
Q Consensus 345 ~p---~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl------~~G~i~e~g~~~~l~~ 414 (426)
+| ++|||||||++||+.+...+.+.|+++. ++.|||+||||++.+..||||++| ++|++++.|+++++.+
T Consensus 561 ~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 561 RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp CCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence 87 5999999999999999999999999885 478999999999998889999999 8999999999988865
Q ss_pred Cc
Q 014366 415 NH 416 (426)
Q Consensus 415 ~~ 416 (426)
..
T Consensus 641 ~~ 642 (670)
T 3ux8_A 641 VK 642 (670)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=321.79 Aligned_cols=195 Identities=25% Similarity=0.351 Sum_probs=144.6
Q ss_pred eEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE-----------EEcCEeCCCCCHHH
Q 014366 192 NISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI-----------LVDDHDVQNIRLDS 260 (426)
Q Consensus 192 ~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I-----------~~~g~~i~~~~~~~ 260 (426)
|++++|+.+. ..+++++ ++++||++||+||||||||||+|+|+|+++|++|+| .+.|.++..+....
T Consensus 82 ~~~~~Y~~~~-~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (608)
T 3j16_B 82 HVTHRYSANS-FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM 159 (608)
T ss_dssp TEEEECSTTS-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHH
T ss_pred CeEEEECCCc-eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHH
Confidence 4688997643 4677777 689999999999999999999999999999999998 23333222111112
Q ss_pred HhcceE--EEecCCCCC----c---ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 261 LRRHVG--LVSQDITLF----S---GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 261 ~r~~i~--~v~Q~~~lf----~---~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
+.+.+. +.+|....+ . .++.+++.... ....+++.++++.+++.+ ..+....+||||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~---~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgG 225 (608)
T 3j16_B 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM---EKSPEDVKRYIKILQLEN-----------VLKRDIEKLSGG 225 (608)
T ss_dssp HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC---CSCHHHHHHHHHHHTCTG-----------GGGSCTTTCCHH
T ss_pred HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh---hhHHHHHHHHHHHcCCcc-----------hhCCChHHCCHH
Confidence 223332 333332211 1 15566654321 123455666666655544 344566899999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHH-hcCEEEEEeCCE
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~D~i~vl~~G~ 402 (426)
||||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|||+||||++.+. .||||++|++|.
T Consensus 226 e~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 226 ELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999999999999999999999999999864 789999999999986 699999998764
No 60
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.5e-37 Score=322.13 Aligned_cols=193 Identities=22% Similarity=0.307 Sum_probs=147.6
Q ss_pred EeEEEEeCCCCCCcceeeeEEEe-CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE-----------EEcCEeCCCCCH
Q 014366 191 CNISFKYADNMPLVLDQLNLHIR-AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI-----------LVDDHDVQNIRL 258 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~-~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I-----------~~~g~~i~~~~~ 258 (426)
++++.+|+.+ .++-..|.++ +||++||+||||||||||+|+|+|+++|++|+| .++|.++..+..
T Consensus 3 ~~~~~~~~~~---~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 3 GEVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CCEEEESSTT---SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCCceecCCC---ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 3567899765 3455555554 899999999999999999999999999999998 567765532211
Q ss_pred HHHh------cceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 259 DSLR------RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 259 ~~~r------~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
.... ..+.+++|.+.++.+|+++++..... .+++.++++.+++.+ ..+....+|||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-----~~~~~~~l~~l~l~~-----------~~~~~~~~LSgGe 143 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE-----RGKKDEVKELLNMTN-----------LWNKDANILSGGG 143 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCC-----SSCHHHHHHHTTCGG-----------GTTSBGGGCCHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcchh-----HHHHHHHHHHcCCch-----------hhcCChhhCCHHH
Confidence 1111 12334444555667789888743211 123445566555543 3344567999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHH-hcCEEEEEeCCE
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~D~i~vl~~G~ 402 (426)
|||++|||||+.+|++||||||||+||+.+...+.+.|+++.+++|||+||||++.+. .||+|++|++|.
T Consensus 144 ~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 144 LQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999999999999999999999999877899999999999886 799999998753
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8.6e-35 Score=318.08 Aligned_cols=202 Identities=25% Similarity=0.406 Sum_probs=148.6
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHH---------HHHhcCCCCCc------c------EEEEcCEeCCCCCH---
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLA---------KLLLRLYDPLS------G------CILVDDHDVQNIRL--- 258 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl---------~ll~g~~~p~~------G------~I~~~g~~i~~~~~--- 258 (426)
..|+||||+|++|++++|+|+||||||||+ +++.+...+.. | .+.++..++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 44444443332 2 35555555432110
Q ss_pred H-------H-------------------------------HhcceEEEecCCCCCcc-----------------------
Q 014366 259 D-------S-------------------------------LRRHVGLVSQDITLFSG----------------------- 277 (426)
Q Consensus 259 ~-------~-------------------------------~r~~i~~v~Q~~~lf~~----------------------- 277 (426)
. . -.+..|+++++..+++.
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0 0 01235788887766542
Q ss_pred ----------cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 278 ----------TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 278 ----------ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
|+.|++.+.... ...++.. +.+..+ |+. ..+++++.+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~--~~~~~~~---------~~L~~v--GL~~~~lgq~~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI--PSIKRTL---------QVLHDV--GLGYVKLGQPATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC--HHHHHHH---------HHHHHT--TGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCC
T ss_pred cCCHHHHhhCCHHHHHHHHhcc--hhHHHHH---------HHHHHc--CCchhhccCCccCCCHHHHHHHHHHHHHhhCC
Confidence 344444332210 0111222 233333 333 3468889999999999999999999876
Q ss_pred ---CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEE------eCCEEEEeccccccccCc
Q 014366 347 ---SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLL------DNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 347 ---~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl------~~G~i~e~g~~~~l~~~~ 416 (426)
++|||||||+|||+.+++.+++.|+++. +++|||+||||++.++.||+|++| ++|+|++.|+|+++.+++
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~ 904 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNP 904 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCC
Confidence 7999999999999999999999999885 578999999999999899999999 899999999999988765
Q ss_pred c
Q 014366 417 D 417 (426)
Q Consensus 417 ~ 417 (426)
.
T Consensus 905 ~ 905 (916)
T 3pih_A 905 H 905 (916)
T ss_dssp T
T ss_pred c
Confidence 4
No 62
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=7.4e-34 Score=288.58 Aligned_cols=203 Identities=19% Similarity=0.278 Sum_probs=148.3
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC--------------------------------------CCcc
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD--------------------------------------PLSG 244 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~--------------------------------------p~~G 244 (426)
..++++||++++| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3799999999999 999999999999999999977664 4578
Q ss_pred EEEEcCEeCCCCCHHHHhcc-eEEEecCCCCCcccHHHHHcCCCCCCCCCHH-------HHHHHH---------------
Q 014366 245 CILVDDHDVQNIRLDSLRRH-VGLVSQDITLFSGTVAENIGYRDLMTKIDME-------RVEHTA--------------- 301 (426)
Q Consensus 245 ~I~~~g~~i~~~~~~~~r~~-i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~-------~~~~~~--------------- 301 (426)
++++||++++..+..++.+. +++++|++.++-.+..++..+.......... ...++.
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99999999876556666665 8999999887655444333221110000000 000000
Q ss_pred ----------------H-----------------HhchHHHHHhc--CC----------------Cccc---ccCCCCCC
Q 014366 302 ----------------R-----------------TANADEFVRTL--PQ----------------GYNT---HIGPRGSS 327 (426)
Q Consensus 302 ----------------~-----------------~~~l~~~~~~l--p~----------------g~~t---~~~~~g~~ 327 (426)
. ...+.+.+..+ |. |++. .+..++.+
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 0 00111222222 11 1111 23333333
Q ss_pred --------CChHHHHHHHHHHHhcCCC--CEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEE
Q 014366 328 --------LSGGQRQRLAIARALYQNS--SVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFL 397 (426)
Q Consensus 328 --------LSgGqkQRl~iARal~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~v 397 (426)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|+++.++.|||+|||+++.+..||++++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE
Confidence 7999999999999999999 999999999999999999999999998778899999999988889999999
Q ss_pred E----eCCEEEEe
Q 014366 398 L----DNGKLEEL 406 (426)
Q Consensus 398 l----~~G~i~e~ 406 (426)
| ++|+++..
T Consensus 368 l~k~~~~G~~~~~ 380 (415)
T 4aby_A 368 VEKQVEDGRTVSH 380 (415)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEeccCCceEEE
Confidence 9 99998754
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=1.8e-33 Score=305.41 Aligned_cols=215 Identities=23% Similarity=0.388 Sum_probs=157.1
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHH-HhcCC-------CC----------------
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKL-LLRLY-------DP---------------- 241 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~l-l~g~~-------~p---------------- 241 (426)
..|+++|+++ ..|+|+||+|++||++||+|+||||||||++. |+|++ +|
T Consensus 501 ~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 501 GWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp CEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred ceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 3599999975 26999999999999999999999999999996 66543 23
Q ss_pred --Ccc-------EEEEcCEeCCCCCH----------HHHhcce---------EEEec----------------------C
Q 014366 242 --LSG-------CILVDDHDVQNIRL----------DSLRRHV---------GLVSQ----------------------D 271 (426)
Q Consensus 242 --~~G-------~I~~~g~~i~~~~~----------~~~r~~i---------~~v~Q----------------------~ 271 (426)
.+| .|.++|.++...+. ..+|+.+ +|.++ +
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 466 68899988754321 1222222 22211 1
Q ss_pred CCCC------------------------c-ccHHHHHcCCCC-----CCCCCHHHHHHHHHHhchHHHHHhcCCCccc-c
Q 014366 272 ITLF------------------------S-GTVAENIGYRDL-----MTKIDMERVEHTARTANADEFVRTLPQGYNT-H 320 (426)
Q Consensus 272 ~~lf------------------------~-~ti~eni~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~ 320 (426)
..++ . .||.||+.+... ... . ... ....+.++.+ |+.. .
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~-~-~~~------~~~~~~L~~~--gL~~~~ 723 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD-E-SAI------FRALDTLREV--GLGYLR 723 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT-S-HHH------HHHHHHHHHT--TCTTSB
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc-c-hHH------HHHHHHHHHc--CCCccc
Confidence 1111 1 255666533110 000 0 001 1123445554 5554 4
Q ss_pred cCCCCCCCChHHHHHHHHHHHhcCC---CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEE
Q 014366 321 IGPRGSSLSGGQRQRLAIARALYQN---SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVF 396 (426)
Q Consensus 321 ~~~~g~~LSgGqkQRl~iARal~~~---p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~ 396 (426)
++....+|||||||||+|||+|+++ |++|||||||+|||+.+.+.+.+.|+++. ++.|||+|||+++.+..||||+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 6788899999999999999999996 79999999999999999999999999885 5789999999999998899999
Q ss_pred EE------eCCEEEEeccccccccCcc
Q 014366 397 LL------DNGKLEELNRSTLLGSNHD 417 (426)
Q Consensus 397 vl------~~G~i~e~g~~~~l~~~~~ 417 (426)
+| ++|++++.|+++++.++..
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~~ 830 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAAG 830 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCTT
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCch
Confidence 99 7999999999998876643
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=2.3e-33 Score=305.09 Aligned_cols=210 Identities=24% Similarity=0.359 Sum_probs=155.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHh-cCC-------CCCcc-------------E
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL-RLY-------DPLSG-------------C 245 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~-g~~-------~p~~G-------------~ 245 (426)
.++++|++. ..|+||||+|++||+++|+|+||||||||+++|+ |.+ .+..| .
T Consensus 629 ~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 701 (972)
T 2r6f_A 629 WLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKV 701 (972)
T ss_dssp EEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEE
T ss_pred EEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceE
Confidence 488888852 3799999999999999999999999999999854 221 12233 4
Q ss_pred EEEcCEeCCCCC---HH-------HH---------hcceEEEecCCCCC-------------------------------
Q 014366 246 ILVDDHDVQNIR---LD-------SL---------RRHVGLVSQDITLF------------------------------- 275 (426)
Q Consensus 246 I~~~g~~i~~~~---~~-------~~---------r~~i~~v~Q~~~lf------------------------------- 275 (426)
|.+++.++.... +. .. .+.+||++|...+.
T Consensus 702 I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~ 781 (972)
T 2r6f_A 702 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 781 (972)
T ss_dssp EEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTT
T ss_pred EEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccc
Confidence 788888874321 11 11 12357887753221
Q ss_pred ------------------------cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc-ccCCCCCCCCh
Q 014366 276 ------------------------SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLSG 330 (426)
Q Consensus 276 ------------------------~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~~~g~~LSg 330 (426)
..|+.||+.+... . ....+ ..+.++.+ |+.. .++....+|||
T Consensus 782 c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~---~--~~~~~------~~~~L~~~--gL~~~~l~~~~~~LSG 848 (972)
T 2r6f_A 782 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS---I--PKIKR------KLETLYDV--GLGYMKLGQPATTLSG 848 (972)
T ss_dssp TTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS---C--HHHHH------HHHHHHHT--TCSSSBTTCCGGGCCH
T ss_pred cccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc---c--hhHHH------HHHHHHHc--CCCcccccCchhhCCH
Confidence 1134444433211 0 01111 12344444 5665 67888999999
Q ss_pred HHHHHHHHHHHhcCCC---CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEE------eC
Q 014366 331 GQRQRLAIARALYQNS---SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLL------DN 400 (426)
Q Consensus 331 GqkQRl~iARal~~~p---~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl------~~ 400 (426)
||||||+|||+|+++| ++|||||||+|||+.+.+.+.+.|+++. ++.|||+|||+++.+..||||++| ++
T Consensus 849 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~ 928 (972)
T 2r6f_A 849 GEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRG 928 (972)
T ss_dssp HHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSC
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCC
Confidence 9999999999999875 9999999999999999999999999885 578999999999998889999999 78
Q ss_pred CEEEEeccccccccCc
Q 014366 401 GKLEELNRSTLLGSNH 416 (426)
Q Consensus 401 G~i~e~g~~~~l~~~~ 416 (426)
|++++.|+++++.++.
T Consensus 929 G~Iv~~g~~~el~~~~ 944 (972)
T 2r6f_A 929 GQIVAVGTPEEVAEVK 944 (972)
T ss_dssp CSEEEEESHHHHHTCT
T ss_pred CEEEEecCHHHHHhCc
Confidence 9999999998887654
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-37 Score=318.02 Aligned_cols=192 Identities=13% Similarity=0.155 Sum_probs=152.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc-E-EEEcCEeCCCCCHHHHhcc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-C-ILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G-~-I~~~g~~i~~~~~~~~r~~ 264 (426)
.++++||+|+|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |++|| + .++.
T Consensus 118 mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~ 180 (460)
T 2npi_A 118 MKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQP 180 (460)
T ss_dssp HHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSC
T ss_pred hhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCC
Confidence 467777777773 68999999999999999999999999999999999999 9 99998 1 3678
Q ss_pred eEEEecCCCCCc----ccHHHHHcCCCCC-CCC-CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 265 VGLVSQDITLFS----GTVAENIGYRDLM-TKI-DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 265 i~~v~Q~~~lf~----~ti~eni~~~~~~-~~~-~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
++|+||++.+|+ .|++||+ ++... ... ..+++..+++.+ |++.... +.+||||||||++|
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrlal 246 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQLGQ 246 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHHHH
T ss_pred eeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHHHH
Confidence 999999986543 4899999 65421 110 111111222222 4444433 67999999999999
Q ss_pred HHH--hcCCCCE----EEeec-cCCCCCHHHHHHHHHHHHHHcCCceEEEeccChH------HH-HhcCE-----EEEEe
Q 014366 339 ARA--LYQNSSV----LILDE-ATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLE------TV-MMAKR-----VFLLD 399 (426)
Q Consensus 339 ARa--l~~~p~i----lllDE-pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~------~~-~~~D~-----i~vl~ 399 (426)
||| |+.+|++ ||||| ||++||+. .+.+.+.++++ +.|+|+|||+.+ .+ ..||| |++|+
T Consensus 247 Ara~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~ 323 (460)
T 2npi_A 247 VVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP 323 (460)
T ss_dssp HHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred HHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence 999 9999999 99999 99999999 77777777664 578999999987 55 47999 99999
Q ss_pred -CCEEEEeccccccc
Q 014366 400 -NGKLEELNRSTLLG 413 (426)
Q Consensus 400 -~G~i~e~g~~~~l~ 413 (426)
+|+++ .|+++++.
T Consensus 324 k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 324 KLDGVS-AVDDVYKR 337 (460)
T ss_dssp CCTTCC-CCCHHHHH
T ss_pred CCCcEE-ECCHHHHh
Confidence 99999 88887663
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.98 E-value=1.1e-32 Score=300.79 Aligned_cols=211 Identities=21% Similarity=0.309 Sum_probs=152.7
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHh-c----CCC---CCccE------------
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL-R----LYD---PLSGC------------ 245 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~-g----~~~---p~~G~------------ 245 (426)
..+++++++. ..|+|+||+|++||++||+|+||||||||+++|+ | .+. +..|.
T Consensus 646 ~~L~v~~l~~-------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 646 RQLTVVGARE-------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp SEEEEEEECS-------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred ceEEEecCcc-------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 3589999852 3799999999999999999999999999999853 2 222 23443
Q ss_pred -EEEcCEeCCCC---CHH-------HH---------hcceEEEecCCCCC------------------------------
Q 014366 246 -ILVDDHDVQNI---RLD-------SL---------RRHVGLVSQDITLF------------------------------ 275 (426)
Q Consensus 246 -I~~~g~~i~~~---~~~-------~~---------r~~i~~v~Q~~~lf------------------------------ 275 (426)
|.+++.++... ++. .. .+..||++|...+.
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 45566555321 111 11 13457777753220
Q ss_pred -------------------------cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccc-ccCCCCCCCC
Q 014366 276 -------------------------SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNT-HIGPRGSSLS 329 (426)
Q Consensus 276 -------------------------~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~~~g~~LS 329 (426)
..|+.|++.+... . ....+ ..+.++.+ |+.. .++..+.+||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~---~--~~~~~------~~~~L~~l--gL~~~~l~~~~~~LS 865 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP---I--AGVHR------YLRTLVDV--GLGYVRLGQPAPTLS 865 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT---C--HHHHH------HHHHHHHT--TGGGSBTTCCGGGSC
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc---c--hHHHH------HHHHHHHc--CCCcccccCccccCC
Confidence 0133333332211 0 01111 12344444 5655 6788899999
Q ss_pred hHHHHHHHHHHHhcCCC---CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEE------e
Q 014366 330 GGQRQRLAIARALYQNS---SVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLL------D 399 (426)
Q Consensus 330 gGqkQRl~iARal~~~p---~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl------~ 399 (426)
|||||||+|||+|+++| ++|||||||+|||+.+.+.+.+.|+++. .+.|||+|||+++.+..||||++| +
T Consensus 866 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~ 945 (993)
T 2ygr_A 866 GGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAG 945 (993)
T ss_dssp HHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTS
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCC
Confidence 99999999999999875 9999999999999999999999999875 578999999999998889999999 6
Q ss_pred CCEEEEeccccccccCc
Q 014366 400 NGKLEELNRSTLLGSNH 416 (426)
Q Consensus 400 ~G~i~e~g~~~~l~~~~ 416 (426)
+|++++.|+++++.++.
T Consensus 946 ~G~Iv~~G~~~el~~~~ 962 (993)
T 2ygr_A 946 GGTVVAQGTPEDVAAVP 962 (993)
T ss_dssp CSEEEEEECHHHHHHCT
T ss_pred CCEEEEecCHHHHHhCC
Confidence 89999999998876553
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=1.6e-30 Score=255.85 Aligned_cols=197 Identities=19% Similarity=0.247 Sum_probs=139.8
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC----------------------------------------------
Q 014366 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY---------------------------------------------- 239 (426)
Q Consensus 206 ~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~---------------------------------------------- 239 (426)
+++++++.+| +++|+||||||||||+++|..+.
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578899999 99999999999999999998543
Q ss_pred ----CCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCC-cccHHHHHcCCCCCC-CC------------CHHHHHHHH
Q 014366 240 ----DPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMT-KI------------DMERVEHTA 301 (426)
Q Consensus 240 ----~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ti~eni~~~~~~~-~~------------~~~~~~~~~ 301 (426)
.+.+|.+++||.+++..+...+...+++.||+..++ .+++.+|+....... .. ..+++.+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344578999999875444455566788889988766 679999986532100 00 001111111
Q ss_pred HHh------------ch-HHHHHhcCCCccccc------CCCCCCCChHHHHHHHHHHHhc----CCCCEEEeeccCCCC
Q 014366 302 RTA------------NA-DEFVRTLPQGYNTHI------GPRGSSLSGGQRQRLAIARALY----QNSSVLILDEATSAL 358 (426)
Q Consensus 302 ~~~------------~l-~~~~~~lp~g~~t~~------~~~g~~LSgGqkQRl~iARal~----~~p~illlDEpts~L 358 (426)
... .+ .+....++.|+++.+ ...+.+||||||||++|||||+ .+|+++||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 100 00 001123444665432 3346799999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEE--EEEeCCEE
Q 014366 359 DSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRV--FLLDNGKL 403 (426)
Q Consensus 359 D~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i--~vl~~G~i 403 (426)
|+.+.+.+.+.++++.++.|+|++||+++....||++ ++|++|.-
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 9999999999999986678999999998877889987 88888854
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.96 E-value=2.8e-32 Score=251.86 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=102.0
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~en 282 (426)
.+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|.. .++.. +...+++.++|+||++ +||
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC-CchhhhcceEEecCCH-------HHH
Confidence 589985 89999999999999999999999999 999999943 33321 2224577899999987 555
Q ss_pred H-cCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHH
Q 014366 283 I-GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361 (426)
Q Consensus 283 i-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~ 361 (426)
+ .+..+. .+.+........+.+.++. |+ |||||++|||||+.+|++|||||||++
T Consensus 79 l~~~~~~~----~~~~~~~~~~~~~~~~l~~---gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~---- 134 (208)
T 3b85_A 79 IDPYLRPL----HDALRDMVEPEVIPKLMEA---GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT---- 134 (208)
T ss_dssp -CTTTHHH----HHHHTTTSCTTHHHHHHHT---TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----
T ss_pred HHHHHHHH----HHHHHHhccHHHHHHHHHh---CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----
Confidence 5 332100 0000000000112233322 21 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEE
Q 014366 362 SELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKL 403 (426)
Q Consensus 362 ~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i 403 (426)
++..+.+.|+++.+++|+| +||+++.+. +....++|..
T Consensus 135 ~~~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 135 TPAQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp CHHHHHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred cHHHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcHH
Confidence 8888999998874468899 999988664 3445667754
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.95 E-value=4.6e-28 Score=242.24 Aligned_cols=84 Identities=21% Similarity=0.313 Sum_probs=77.1
Q ss_pred CCCCCCCChHHHHHHHHHHHhc------CCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCE
Q 014366 322 GPRGSSLSGGQRQRLAIARALY------QNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKR 394 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iARal~------~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~ 394 (426)
+....+||||||||++|||||+ .+|++|||||||++||+.+...+.+.|+++. .++|||+|||+++....||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 3466789999999999999999 7999999999999999999999999999885 47899999999998878999
Q ss_pred EEEEeCCEEEE
Q 014366 395 VFLLDNGKLEE 405 (426)
Q Consensus 395 i~vl~~G~i~e 405 (426)
+++|++|++++
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999874
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.95 E-value=7.8e-29 Score=221.80 Aligned_cols=149 Identities=20% Similarity=0.241 Sum_probs=107.1
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCC--CCcccHHHHHc
Q 014366 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDIT--LFSGTVAENIG 284 (426)
Q Consensus 207 ~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~--lf~~ti~eni~ 284 (426)
|+||++++||+++|+||||||||||++++.+ |...+ +.+.++ ++++|++. .+.+++++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 21112 122333 67778763 22233333321
Q ss_pred CCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHH---
Q 014366 285 YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR--- 361 (426)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~--- 361 (426)
... ...+..|+.+.++.. ...|||||||++||||++.+|++++|||||++||+.
T Consensus 64 --------------~~~--------~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 --------------YIV--------SKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp --------------HHH--------HHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred --------------HHH--------HHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 000 011122555544433 456999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEE
Q 014366 362 -------------SELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRV 395 (426)
Q Consensus 362 -------------~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i 395 (426)
..+.+.+.++++. ++.|+|++||+++.+..++++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 4477888876663 478999999999999877765
No 71
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.95 E-value=6.7e-32 Score=266.39 Aligned_cols=205 Identities=15% Similarity=0.137 Sum_probs=144.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCC-CCCCccEE---------E
Q 014366 122 SFDGCSLVSFITSLVFMIEPIQGVGK-AYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSL-DHINGDVK---------F 190 (426)
Q Consensus 122 ~l~~g~l~~~~~~~~~~~~p~~~l~~-~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~-~~~~~~i~---------~ 190 (426)
.++.+.+.+++.++..+..| .+.. ....+..+..+.+|+..+++.|... ........ ....+.++ +
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~-~~~~~~~ir~~~~~~i~l~~l~~~g~~ 151 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVN-DETISISIRIPSKTTYPHSFFEEQGFY 151 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSS-TTCCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccC-CCCceEEEeCCCCCCCCHHHHHhCCCc
Confidence 68889998888877665554 2322 2222333334456776666433211 10000000 01112344 5
Q ss_pred EeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEec
Q 014366 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQ 270 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q 270 (426)
++++| | .++++++||++++|++++|+||||||||||+++|+|+++|++|.|.++|.+. +....+++.+++++
T Consensus 152 ~~v~f-y----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~~- 223 (330)
T 2pt7_A 152 NLLDN-K----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLFF- 223 (330)
T ss_dssp TTSTT-H----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEEC-
T ss_pred Cchhh-H----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEEe-
Confidence 56666 6 2489999999999999999999999999999999999999999999998652 22222344454443
Q ss_pred CCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEE
Q 014366 271 DITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLI 350 (426)
Q Consensus 271 ~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ill 350 (426)
| |||+||++|||||..+|++++
T Consensus 224 ---------------------------------------------g-------------gg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 224 ---------------------------------------------G-------------GNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp ---------------------------------------------B-------------TTBCHHHHHHHHTTSCCSEEE
T ss_pred ---------------------------------------------C-------------CChhHHHHHHHHhhhCCCEEE
Confidence 0 899999999999999999999
Q ss_pred eeccCCCCCHHHHHHHHHHHHHHcCC-ceEEEeccChHHHHhcCEEEEEeCCE
Q 014366 351 LDEATSALDSRSELLVRQAVDRLLGH-HTVLVIAHHLETVMMAKRVFLLDNGK 402 (426)
Q Consensus 351 lDEpts~LD~~~~~~i~~~l~~~~~~-~tvi~itH~~~~~~~~D~i~vl~~G~ 402 (426)
|||||+. ++.+.|+.+..+ .|+|+++|+.+....|||+++|.+|+
T Consensus 246 ldE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 246 LGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp ECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred EcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 9999982 345667666555 47999999999778999999999885
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.94 E-value=2e-28 Score=220.75 Aligned_cols=148 Identities=18% Similarity=0.176 Sum_probs=109.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHH
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMER 296 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~ 296 (426)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ +..+|+. +.. ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~--~~---- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSK--FF---- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EET--TC----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhh--cC----
Confidence 689999999999999999999985 556776543332124567899999987 3334431 100 00
Q ss_pred HHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH-----hcCCCCEEEeec--cCCCCCHHHHHHHHHH
Q 014366 297 VEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA-----LYQNSSVLILDE--ATSALDSRSELLVRQA 369 (426)
Q Consensus 297 ~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa-----l~~~p~illlDE--pts~LD~~~~~~i~~~ 369 (426)
+ .+..+++.+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.
T Consensus 65 -----------------~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~ 125 (178)
T 1ye8_A 65 -----------------T--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI 125 (178)
T ss_dssp -----------------C--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH
T ss_pred -----------------C--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHH
Confidence 0 0134566778999999999999996 999999999999 9999999999999998
Q ss_pred HHHHcCCceEEEecc---ChHHHH-hcCEEEEEeCCEEEEe
Q 014366 370 VDRLLGHHTVLVIAH---HLETVM-MAKRVFLLDNGKLEEL 406 (426)
Q Consensus 370 l~~~~~~~tvi~itH---~~~~~~-~~D~i~vl~~G~i~e~ 406 (426)
+++ .+.|+|++|| +.+.+. .||| .+|++.+.
T Consensus 126 l~~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 126 MHD--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIEL 160 (178)
T ss_dssp HTC--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEEC
T ss_pred Hhc--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEEe
Confidence 876 3567888885 777775 6888 56777663
No 73
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.94 E-value=1.9e-30 Score=241.51 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=115.1
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH-HHHhcceEEEecCCCCCcc-c-H
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-DSLRRHVGLVSQDITLFSG-T-V 279 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~-~~~r~~i~~v~Q~~~lf~~-t-i 279 (426)
..|+|+||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++...+. ...++.++|+||++.+|+. + .
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3799999999999999999999999999999999999 6 99999 877654322 2346789999999887753 2 1
Q ss_pred HHHHc---CCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH-----HHHhcCCCCEEEe
Q 014366 280 AENIG---YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI-----ARALYQNSSVLIL 351 (426)
Q Consensus 280 ~eni~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i-----ARal~~~p~illl 351 (426)
.+++. +.......+.++++++++... ...++ .+|||||+||++| ||+++.+|++++|
T Consensus 87 ~~~l~~~~~~~~~~g~~~~~i~~~l~~~~------------~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTLKSEYDKAKEQNK------------ICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTTC------------EEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred cchhhhhhcccccCCCcHHHHHHHHhCCC------------cEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 22322 111111122344444444321 11222 5799999999999 8999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHcCC--------ceEEEeccChHHH-HhcCEEE
Q 014366 352 DEATSALDSRSELLVRQAVDRLLGH--------HTVLVIAHHLETV-MMAKRVF 396 (426)
Q Consensus 352 DEpts~LD~~~~~~i~~~l~~~~~~--------~tvi~itH~~~~~-~~~D~i~ 396 (426)
||||+++|.+++..+.+.+.+..++ .+.|+++|+++.+ ..+|+++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 9999999999999999998766433 3455555655443 2344443
No 74
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.93 E-value=5.6e-29 Score=251.33 Aligned_cols=172 Identities=16% Similarity=0.130 Sum_probs=134.8
Q ss_pred CcceeeeEEEeCCC--------------------EEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHh
Q 014366 203 LVLDQLNLHIRAGE--------------------TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLR 262 (426)
Q Consensus 203 ~~l~~isl~i~~Ge--------------------~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r 262 (426)
.+|+++||++++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.+.. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999997653 2
Q ss_pred cceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH--HHHHHHHHH
Q 014366 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG--QRQRLAIAR 340 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG--qkQRl~iAR 340 (426)
.++++|++.....|+.||+.++.. ..++.+.++..++.+. +.. .. |||| ||||++|||
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~-----~~~~~~~L~~~~L~~~--------~~~----~~-lS~G~~~kqrv~la~ 169 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST-----NFPPDTYLEKMKFYEY--------DFF----II-ISATRFKKNDIDIAK 169 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS-----SCCHHHHHHHTTGGGC--------SEE----EE-EESSCCCHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccch-----HHHHHHHHHHcCCCcc--------CCe----EE-eCCCCccHHHHHHHH
Confidence 278999975446699999876532 1234556666554321 111 12 9999 999999999
Q ss_pred HhcC----------CCCEEEeeccCCCCCHHHHHHHHHHHHHHc------C----CceEEEeccChHH--HH-hcCEEE-
Q 014366 341 ALYQ----------NSSVLILDEATSALDSRSELLVRQAVDRLL------G----HHTVLVIAHHLET--VM-MAKRVF- 396 (426)
Q Consensus 341 al~~----------~p~illlDEpts~LD~~~~~~i~~~l~~~~------~----~~tvi~itH~~~~--~~-~~D~i~- 396 (426)
|+.+ +|++++|||||++||+.+++++.+.++++. . ..++++.||.++. +. .||++.
T Consensus 170 aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~ 249 (413)
T 1tq4_A 170 AISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLIS 249 (413)
T ss_dssp HHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHH
T ss_pred HHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHH
Confidence 9999 999999999999999999999999988762 1 2568889999876 64 588874
Q ss_pred EEeCC
Q 014366 397 LLDNG 401 (426)
Q Consensus 397 vl~~G 401 (426)
.|.+|
T Consensus 250 ~Lpeg 254 (413)
T 1tq4_A 250 DLPIY 254 (413)
T ss_dssp HSCGG
T ss_pred hCccc
Confidence 34444
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.93 E-value=5e-29 Score=254.35 Aligned_cols=195 Identities=16% Similarity=0.111 Sum_probs=154.7
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCE---eCCCCC-----
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH---DVQNIR----- 257 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~---~i~~~~----- 257 (426)
..++++++++.|+.+ ..+|+++ |+|.+||+++|+||||||||||+++|+|+++|++|.|.++|+ ++.++.
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 468899999999743 3599999 999999999999999999999999999999999999999998 554321
Q ss_pred HHHHhcceEEEecC-CCCC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHH
Q 014366 258 LDSLRRHVGLVSQD-ITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 258 ~~~~r~~i~~v~Q~-~~lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
...+++.++|++|+ ..++ ..|+.+|+.+.. +.... +...+ ...+ +...+||+|| ||
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a--------e~~~~-~~~~v-----------~~~l-d~l~~lS~g~-qr 265 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIA--------EDFRD-RGQHV-----------LLIM-DSLTRYAMAQ-RE 265 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH--------HHHHT-TTCEE-----------EEEE-ECHHHHHHHH-HH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHH--------HHHHh-CCCCH-----------HHHH-HhHHHHHHHH-HH
Confidence 24577889999995 3344 459999986521 11000 00000 1111 1246899999 99
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-----Cc-----eEEEeccChHHHHhcCEEEEEeCCEEEE
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-----HH-----TVLVIAHHLETVMMAKRVFLLDNGKLEE 405 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-----~~-----tvi~itH~~~~~~~~D~i~vl~~G~i~e 405 (426)
++|| +.+|++ |+|||+.+...+.+.++++.+ ++ ||+++|||++ ...||++++|.+|+++.
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEE
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEE
Confidence 9999 899998 999999999999999988754 43 9999999999 66899999999999999
Q ss_pred ecccccccc
Q 014366 406 LNRSTLLGS 414 (426)
Q Consensus 406 ~g~~~~l~~ 414 (426)
.|++.++..
T Consensus 336 ~~~~~~~~~ 344 (438)
T 2dpy_A 336 SRRLAEAGH 344 (438)
T ss_dssp CHHHHHTTC
T ss_pred eCCHHHccC
Confidence 998877654
No 76
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.92 E-value=9.6e-28 Score=221.07 Aligned_cols=170 Identities=16% Similarity=0.087 Sum_probs=113.8
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc-cHH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVA 280 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 280 (426)
.++++| .+|++||+++|+||||||||||+++|+|+++. |.+++.....-.....++.++|+||++.+|+. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 457888 79999999999999999999999999999963 44443221111112235679999999988754 777
Q ss_pred HHHcCCC------CCCCCCHHHHHHH----------HHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 281 ENIGYRD------LMTKIDMERVEHT----------ARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 281 eni~~~~------~~~~~~~~~~~~~----------~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
+|+.... .....+.++..+. ++..++.++.+..| ..|| ||+.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEEE
Confidence 7764210 0011223333322 33445555555544 3566 9999
Q ss_pred CCCEEEeeccCCCC----CHHHHHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEe
Q 014366 345 NSSVLILDEATSAL----DSRSELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLD 399 (426)
Q Consensus 345 ~p~illlDEpts~L----D~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~ 399 (426)
+|++++|||||+++ |+..++++.+.++++. .+.|+|+|||+++.+. .||||++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 7789999999998875 3689999999999885 799999985
No 77
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.92 E-value=5.2e-27 Score=228.55 Aligned_cols=175 Identities=17% Similarity=0.188 Sum_probs=127.3
Q ss_pred ceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHH--hcceEEEecCCC-CCcc
Q 014366 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDSL--RRHVGLVSQDIT-LFSG 277 (426)
Q Consensus 205 l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~----~~~~--r~~i~~v~Q~~~-lf~~ 277 (426)
++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..++|++|++. +++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 34678889999999999999999999999999999999999999999876532 1233 357999999998 7754
Q ss_pred -cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC--EEEeecc
Q 014366 278 -TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEA 354 (426)
Q Consensus 278 -ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~--illlDEp 354 (426)
|++||+.++.. ...+ ...++.+ |+.........+|| |||++||||++.+|+ +|+|| |
T Consensus 170 ~~v~e~l~~~~~-~~~d----~~lldt~-----------gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-p 229 (302)
T 3b9q_A 170 TVLSKAVKRGKE-EGYD----VVLCDTS-----------GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-G 229 (302)
T ss_dssp HHHHHHHHHHHH-TTCS----EEEECCC-----------CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-G
T ss_pred HHHHHHHHHHHH-cCCc----chHHhcC-----------CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-C
Confidence 99999965321 0100 0011112 22222222335688 999999999999999 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCceEEEecc---------ChHHHH-hcCEEEEEeCCEE
Q 014366 355 TSALDSRSELLVRQAVDRLLGHHTVLVIAH---------HLETVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 355 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH---------~~~~~~-~~D~i~vl~~G~i 403 (426)
|++||+.++. +.+.+ ..+.|+|++|| .++.+. ..+.|.++..|+.
T Consensus 230 tsglD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 230 NTGLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9999998652 22322 13689999999 344443 5789999999975
No 78
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.91 E-value=8.6e-27 Score=223.59 Aligned_cols=148 Identities=16% Similarity=0.230 Sum_probs=96.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc-cHHHHHcCCCCCCC-CCH
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTK-IDM 294 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~-~~~ 294 (426)
.++|+||||||||||+|+|+|+..|++|+|.++|.++.. ...++.+++++|++.++.. ||.||+.++..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999988743 2345789999999998855 99999998754221 112
Q ss_pred HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 014366 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374 (426)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 374 (426)
+.+.+.+. .++.+.++ .+||||||||+++|||++. +++||||+++||+... +.++++.
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~----~~l~~L~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL----EFMKHLS 138 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH----HHHHHHH
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH----HHHHHHH
Confidence 33333333 34444433 4899999999999999876 9999999999999873 3333343
Q ss_pred CCceEEEeccChHHH
Q 014366 375 GHHTVLVIAHHLETV 389 (426)
Q Consensus 375 ~~~tvi~itH~~~~~ 389 (426)
+..++|+|.|..+.+
T Consensus 139 ~~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 139 KVVNIIPVIAKADTM 153 (270)
T ss_dssp TTSEEEEEETTGGGS
T ss_pred hcCcEEEEEeccccC
Confidence 337899998887644
No 79
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.91 E-value=8.3e-28 Score=235.19 Aligned_cols=204 Identities=16% Similarity=0.153 Sum_probs=142.6
Q ss_pred HHHHHHHHHhhcCcccccCCCCCCCCCCCCccEEEEeEEEEeCCCCCCcceeeeEE-----------------------E
Q 014366 156 EPAIERLFDLTKFKSKVIEKPDAVSLDHINGDVKFCNISFKYADNMPLVLDQLNLH-----------------------I 212 (426)
Q Consensus 156 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~-----------------------i 212 (426)
+.++.++.+.+..+....+ ........+.|+++||++.|. ++++++++. +
T Consensus 15 r~~~~~l~~~~~~~~~~~~---~~~l~~~~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (312)
T 3aez_A 15 RRQWRALRMSTPLALTEEE---LVGLRGLGEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDR 87 (312)
T ss_dssp HHHHHGGGTTCCCCCCHHH---HHTTCCTTCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSS
T ss_pred HHHHHHHHhcCCCCCCHHH---HHhccCCCCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCC
Confidence 4556666655544332111 111223345799999999994 467777764 8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCC---
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLM--- 289 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~--- 289 (426)
++|+++||+||||||||||+++|+|+++|+.|. +++++|+|++.+++.|++||+.+....
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~ 150 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFP 150 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCC
Confidence 999999999999999999999999999998663 469999999999888999999763211
Q ss_pred CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHH
Q 014366 290 TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQA 369 (426)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~ 369 (426)
...+.+.+.+. ++.+..|.. ......|||||+||+++|||++.+|+|||||||++.+|+.. ..
T Consensus 151 ~~~d~~~~~~~---------L~~l~~~~~---~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~ 213 (312)
T 3aez_A 151 ESYNRRALMRF---------VTSVKSGSD---YACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LM 213 (312)
T ss_dssp GGBCHHHHHHH---------HHHHHTTCS---CEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CC
T ss_pred hHHHHHHHHHH---------HHHhCCCcc---cCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HH
Confidence 11222333333 333322332 12346899999999999999999999999999999998622 11
Q ss_pred HHHHcCCceEEEeccChHHHH--hcCEEEEEeCCE
Q 014366 370 VDRLLGHHTVLVIAHHLETVM--MAKRVFLLDNGK 402 (426)
Q Consensus 370 l~~~~~~~tvi~itH~~~~~~--~~D~i~vl~~G~ 402 (426)
+.+.. ..+|+|+|+.+... .++|.+.+.+|+
T Consensus 214 l~~~~--D~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 214 VSDLF--DFSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp GGGGC--SEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred HHHhc--CcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 22222 25688899887653 577877776664
No 80
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.90 E-value=8e-24 Score=210.36 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=76.3
Q ss_pred CC-CCChHHHHHHHHHHHhc---------CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCE
Q 014366 325 GS-SLSGGQRQRLAIARALY---------QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKR 394 (426)
Q Consensus 325 g~-~LSgGqkQRl~iARal~---------~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~ 394 (426)
.. .||||||||++|||+|+ .+|+|||||||||+||+..+..+.+.+.++. .|+|++||. +. .||+
T Consensus 262 ~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th~-~~--~~~~ 336 (359)
T 2o5v_A 262 ASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTEL-AP--GAAL 336 (359)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESSC-CT--TCSE
T ss_pred hhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEec-cc--cCCE
Confidence 44 69999999999999999 8999999999999999999999999998874 799999994 44 8999
Q ss_pred EEEEeCCEEEEecccccc
Q 014366 395 VFLLDNGKLEELNRSTLL 412 (426)
Q Consensus 395 i~vl~~G~i~e~g~~~~l 412 (426)
+++|++|++++.|+++++
T Consensus 337 i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 337 TLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEETTEEEECCCTTTS
T ss_pred EEEEECCEEEecCCHHHH
Confidence 999999999999998876
No 81
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.90 E-value=7.5e-26 Score=224.70 Aligned_cols=174 Identities=17% Similarity=0.197 Sum_probs=128.2
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHHH--hcceEEEecCCC-CCc-c
Q 014366 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDSL--RRHVGLVSQDIT-LFS-G 277 (426)
Q Consensus 206 ~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~----~~~~--r~~i~~v~Q~~~-lf~-~ 277 (426)
+++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..++|++|++. +++ .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4578889999999999999999999999999999999999999999875432 1223 457999999998 775 4
Q ss_pred cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC--EEEeeccC
Q 014366 278 TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEAT 355 (426)
Q Consensus 278 ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~--illlDEpt 355 (426)
|++||+.++.. ...+. ..++.+ |+.........+|| |||++||||++.+|+ +|+|| ||
T Consensus 228 tv~e~l~~~~~-~~~d~----~lldt~-----------Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pt 287 (359)
T 2og2_A 228 VLSKAVKRGKE-EGYDV----VLCDTS-----------GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GN 287 (359)
T ss_dssp HHHHHHHHHHH-TTCSE----EEEECC-----------CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GG
T ss_pred hHHHHHHHHHh-CCCHH----HHHHhc-----------CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CC
Confidence 99999975321 01110 011112 22222222234688 999999999999999 99999 99
Q ss_pred CCCCHHHHHHHHHHHHHHcCCceEEEecc---------ChHHHH-hcCEEEEEeCCEE
Q 014366 356 SALDSRSELLVRQAVDRLLGHHTVLVIAH---------HLETVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 356 s~LD~~~~~~i~~~l~~~~~~~tvi~itH---------~~~~~~-~~D~i~vl~~G~i 403 (426)
+|+|+.++. +.+.+ ..+.|+|++|| .++.+. ..+.|.++..|+.
T Consensus 288 tglD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 288 TGLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 999998663 22322 13689999999 344443 5789999999964
No 82
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.89 E-value=4.7e-25 Score=218.58 Aligned_cols=196 Identities=15% Similarity=0.139 Sum_probs=146.0
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC-------CH
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI-------RL 258 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~-------~~ 258 (426)
..++.+++++.|+.+ ..+++++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++..+. ..
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 358889999999743 3599999 99999999999999999999999999999999999999998652111 11
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccc-cCCCCCCCChHHHHHHH
Q 014366 259 DSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH-IGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 259 ~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-~~~~g~~LSgGqkQRl~ 337 (426)
..+++.+.+++|... + ..+++..+.....+.++... .|.+.. +-+...+||+|| ||++
T Consensus 122 ~~~~~~v~~~~~~~~----~--------------~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~ 180 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----P--------------ALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVG 180 (347)
T ss_dssp HHHTTEEEEEECTTS----C--------------HHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHH
T ss_pred hhhhceEEEEECCCC----C--------------HHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHH
Confidence 123334555554321 1 12333334444444454332 132211 113467899999 9999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--C-Cc-----eEEEeccChHHHHhcCEEEEEeCCEEEEeccc
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL--G-HH-----TVLVIAHHLETVMMAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~-~~-----tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~ 409 (426)
+| +.+|++ |+|+|+.....+.+.++++. + +. ||+++||+++ -..||++++|.+|+|+..+++
T Consensus 181 la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l 250 (347)
T 2obl_A 181 LA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTREL 250 (347)
T ss_dssp HH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHH
T ss_pred HH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCH
Confidence 99 688887 99999999999999999875 2 56 8999999998 457999999999999999988
Q ss_pred ccccc
Q 014366 410 TLLGS 414 (426)
Q Consensus 410 ~~l~~ 414 (426)
+++..
T Consensus 251 ~~~~~ 255 (347)
T 2obl_A 251 AEENH 255 (347)
T ss_dssp HTTTC
T ss_pred HHcCC
Confidence 76653
No 83
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.88 E-value=4e-23 Score=215.66 Aligned_cols=78 Identities=21% Similarity=0.354 Sum_probs=72.5
Q ss_pred CCCC-ChHHHHHHHHHHHhcCCC--CEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 325 GSSL-SGGQRQRLAIARALYQNS--SVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 325 g~~L-SgGqkQRl~iARal~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
..+| |||||||++||||++.+| ++|||||||+|||+.+...+.+.|+++.+++|||+|||+++.+..||++++|+++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 4567 999999999999999999 9999999999999999999999999987678999999999988899999999665
Q ss_pred E
Q 014366 402 K 402 (426)
Q Consensus 402 ~ 402 (426)
.
T Consensus 474 ~ 474 (517)
T 4ad8_A 474 V 474 (517)
T ss_dssp E
T ss_pred c
Confidence 3
No 84
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.88 E-value=2e-23 Score=231.89 Aligned_cols=171 Identities=17% Similarity=0.177 Sum_probs=122.9
Q ss_pred ccEEEEe-----EEEEeCCCCCCcceeeeEEEeC-------CCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC
Q 014366 186 GDVKFCN-----ISFKYADNMPLVLDQLNLHIRA-------GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (426)
Q Consensus 186 ~~i~~~~-----v~~~y~~~~~~~l~~isl~i~~-------Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i 253 (426)
..|+++| |++.|+++ ..+++|++|++++ |++++|+||||||||||+|++ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred ceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 4599999 99999533 4699999999987 999999999999999999999 99863
Q ss_pred CCCCHHHHhcceE-EEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 254 QNIRLDSLRRHVG-LVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 254 ~~~~~~~~r~~i~-~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
..++| ||||++. ..|+.|||... .++.+.+.. +..++|+++
T Consensus 815 --------~aqiG~~Vpq~~~--~l~v~d~I~~r-----------------ig~~d~~~~-----------~~stf~~em 856 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC--RLTPIDRVFTR-----------------LGASDRIMS-----------GESTFFVEL 856 (1022)
T ss_dssp --------HHTTTCCEESSEE--EECCCSBEEEE-----------------CC--------------------CHHHHHH
T ss_pred --------HhheeEEeccCcC--CCCHHHHHHHH-----------------cCCHHHHhh-----------chhhhHHHH
Confidence 23566 9999873 55777877321 011111111 124677777
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHH-HHHHHHHHHHc-C-CceEEEeccChHHHH-hcCEEEEEeCCEEE--Ee
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSE-LLVRQAVDRLL-G-HHTVLVIAHHLETVM-MAKRVFLLDNGKLE--EL 406 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~-~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~D~i~vl~~G~i~--e~ 406 (426)
++ +++|++++.+|+++||||||+|+|+... ..+.+.++.+. + ++++|++||+++.+. .||++.++ +|++. +.
T Consensus 857 ~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~ 934 (1022)
T 2o8b_B 857 SE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVE 934 (1022)
T ss_dssp HH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC--
T ss_pred HH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEe
Confidence 65 9999999999999999999999999874 55677777764 3 789999999999986 69999887 58887 45
Q ss_pred cccc
Q 014366 407 NRST 410 (426)
Q Consensus 407 g~~~ 410 (426)
|.++
T Consensus 935 ~~~~ 938 (1022)
T 2o8b_B 935 NECE 938 (1022)
T ss_dssp ----
T ss_pred cCcc
Confidence 5443
No 85
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.88 E-value=3.7e-25 Score=231.43 Aligned_cols=175 Identities=14% Similarity=0.112 Sum_probs=126.2
Q ss_pred EeEEEEeCCCCCCcceeeeE-EEeCCCEEEEECCCCCcHHHHHHH--HhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 191 CNISFKYADNMPLVLDQLNL-HIRAGETVALIGPSGGGKSTLAKL--LLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl-~i~~Ge~~~ivG~sGsGKSTLl~l--l~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
+++. +|+.+ .++|+++|| .+++|++++|+||||||||||+++ ++|+++|++|.|+++|.+. .......++.+||
T Consensus 16 ~~~~-~~~~g-~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~ 92 (525)
T 1tf7_A 16 QAIA-KMRTM-IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGW 92 (525)
T ss_dssp SSCC-EECCC-CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTC
T ss_pred cccc-cccCC-chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCC
Confidence 3443 34433 469999999 999999999999999999999999 7899999999999999873 1222344577999
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
++|++... +|+.+...... ++..++++..++.+..++.+ ..||||| |+
T Consensus 93 ~~q~~~~~-----~~l~~~~~~~~---~~~~~~l~~~~l~~~~~~~~-----------~~LS~g~-------------~~ 140 (525)
T 1tf7_A 93 DLAKLVDE-----GKLFILDASPD---PEGQEVVGGFDLSALIERIN-----------YAIQKYR-------------AR 140 (525)
T ss_dssp CHHHHHHT-----TSEEEEECCCC---SSCCSCCSSHHHHHHHHHHH-----------HHHHHHT-------------CS
T ss_pred ChHHhhcc-----CcEEEEecCcc---cchhhhhcccCHHHHHHHHH-----------HHHHHcC-------------CC
Confidence 99987521 12211100000 00111233344444444433 4677774 78
Q ss_pred EEEeeccCCC-----CCHHHHHHHHHHHHHHc-CCceEEEeccChHHH---------Hh-cCEEEEEeC
Q 014366 348 VLILDEATSA-----LDSRSELLVRQAVDRLL-GHHTVLVIAHHLETV---------MM-AKRVFLLDN 400 (426)
Q Consensus 348 illlDEpts~-----LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~---------~~-~D~i~vl~~ 400 (426)
+++|||||+. +|+..++.+.+.+++++ .+.|+|++||+++.+ .. ||+|++|++
T Consensus 141 ~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 141 RVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp EEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred EEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 9999999984 68999999999998875 378999999999873 44 999999998
No 86
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.87 E-value=1e-21 Score=194.31 Aligned_cols=77 Identities=32% Similarity=0.374 Sum_probs=69.2
Q ss_pred CCCCCCChHHHH------HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEE
Q 014366 323 PRGSSLSGGQRQ------RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRV 395 (426)
Q Consensus 323 ~~g~~LSgGqkQ------Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i 395 (426)
.....||||||| |+++|||++.+|++|||||||++||+.....+.+.|+++. ++.|+|+|||+.+....||++
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~ 323 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 323 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEE
Confidence 356789999999 6788899999999999999999999999999999998874 467999999998776789999
Q ss_pred EEEe
Q 014366 396 FLLD 399 (426)
Q Consensus 396 ~vl~ 399 (426)
++|+
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 87
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.86 E-value=1.8e-24 Score=196.56 Aligned_cols=159 Identities=19% Similarity=0.252 Sum_probs=119.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCH
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDM 294 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~ 294 (426)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..++ ..++++++|++|+. .++ ++|+..... ..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~---~g~-~~~l~~~~~--~~~- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL---SGT-RGPLSRVGL--EPP- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET---TSC-EEEEEECCC--CCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec---ccc-eehhhcccc--cCC-
Confidence 78999999999999999999999999 999 99999887544 34688899999986 332 233321100 000
Q ss_pred HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH-HHHH---HhcCCCCEEEeec--cCCCCCHHHHHHHHH
Q 014366 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL-AIAR---ALYQNSSVLILDE--ATSALDSRSELLVRQ 368 (426)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl-~iAR---al~~~p~illlDE--pts~LD~~~~~~i~~ 368 (426)
+...+..+++.+..+|+|||+++ ++++ |++.+|+++|+|| ||..+|....+.+.+
T Consensus 70 -------------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~ 130 (189)
T 2i3b_A 70 -------------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQ 130 (189)
T ss_dssp -------------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHH
T ss_pred -------------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHH
Confidence 01123467888889999999998 5565 6899999999999 899999988777777
Q ss_pred HHHHHcCCceEEE----eccChHHHHhcCEEEEEeCCEEEEec
Q 014366 369 AVDRLLGHHTVLV----IAHHLETVMMAKRVFLLDNGKLEELN 407 (426)
Q Consensus 369 ~l~~~~~~~tvi~----itH~~~~~~~~D~i~vl~~G~i~e~g 407 (426)
.+.+ .+++|+ ++||.+ ...+|+|..+++|+|.+..
T Consensus 131 ~l~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 131 TLST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHHC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred HHhC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 7753 345553 449875 4567888888899998754
No 88
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.86 E-value=5.1e-23 Score=225.23 Aligned_cols=164 Identities=17% Similarity=0.244 Sum_probs=120.5
Q ss_pred HHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCC----CC-CCHHHHHHHHHHhc
Q 014366 231 LAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLM----TK-IDMERVEHTARTAN 305 (426)
Q Consensus 231 Ll~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~----~~-~~~~~~~~~~~~~~ 305 (426)
...|..+.++|..|+|.++|+++.++.. .|+.+|+.+.... .. .......+..+ .
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~~~~------------------~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~--~ 443 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHEFTE------------------LSISEELEFLKNLNLTEREREIVGELLKEIE--K 443 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHHHHH------------------SBHHHHHHHHHSCCCCTTTTTTHHHHHHHHH--H
T ss_pred chhcccccCChHhcCcEECCccHHHhhh------------------CCHHHHHHHHHhccCcHHHHHHHHhhHHHHH--H
Confidence 4456667789999999999998754322 2334443321000 00 00111111111 1
Q ss_pred hHHHHHhcCCCcccc-cCCCCCCCChHHHHHHHHHHHhcCCCC--EEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEE
Q 014366 306 ADEFVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEATSALDSRSELLVRQAVDRLLG-HHTVLV 381 (426)
Q Consensus 306 l~~~~~~lp~g~~t~-~~~~g~~LSgGqkQRl~iARal~~~p~--illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~ 381 (426)
..+++..+ |++.. .+....+|||||||||+|||||+++|+ +|||||||++||+...+.+.+.|+++.+ ++|||+
T Consensus 444 ~~~~L~~v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv 521 (916)
T 3pih_A 444 RLEFLVDV--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV 521 (916)
T ss_dssp HHHHHHTT--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE
T ss_pred HHHHHHHc--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 12344443 66543 577789999999999999999999887 9999999999999999999999999864 789999
Q ss_pred eccChHHHHhcCEEEEE------eCCEEEEeccccccccCc
Q 014366 382 IAHHLETVMMAKRVFLL------DNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 382 itH~~~~~~~~D~i~vl------~~G~i~e~g~~~~l~~~~ 416 (426)
||||++.+..||+|++| ++|+++..|+++++.+++
T Consensus 522 VtHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 522 VEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp ECCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred EeCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 99999999889999999 899999999998876543
No 89
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.86 E-value=3.1e-23 Score=197.84 Aligned_cols=132 Identities=20% Similarity=0.210 Sum_probs=100.7
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~-~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 281 (426)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~---------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR---------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH----------
Confidence 4899999 9999999999999999999999999999998 999999987653221 1112222221
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHH
Q 014366 282 NIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361 (426)
Q Consensus 282 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~ 361 (426)
+-|++. ..| |++|||||..+|+++++|||| |++
T Consensus 79 --------------------------------~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 79 --------------------------------EVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp --------------------------------EBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred --------------------------------HhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 001111 122 899999999999999999999 998
Q ss_pred HHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 362 SELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 362 ~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+...+.+ ....+.+|++++|+.+....|||+++|..
T Consensus 112 ~~~~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETALR---AAETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHH---HHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred HHHHHHH---HHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 8655444 33457899999999987678898877643
No 90
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.86 E-value=1.2e-22 Score=196.87 Aligned_cols=181 Identities=15% Similarity=0.178 Sum_probs=121.0
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc-EEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G-~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 281 (426)
++|+++++.+++|++++|+||||||||||++.|+|...|++| .|.+.+.+ .+..++++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 489999999999999999999999999999999999999988 77665433 3455565555555554322 2233
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH-HHHHHHHHHhcCCCCEEEeeccCC---C
Q 014366 282 NIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ-RQRLAIARALYQNSSVLILDEATS---A 357 (426)
Q Consensus 282 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq-kQRl~iARal~~~p~illlDEpts---~ 357 (426)
++..+. .+.++..+.. .+++...+ + .+.+...++|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 97 ~l~~~~----~~~~~~~~~~-----~~~l~~~~--l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~ 162 (296)
T 1cr0_A 97 SLKREI----IENGKFDQWF-----DELFGNDT--F--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSA 162 (296)
T ss_dssp HHHHHH----HHHTHHHHHH-----HHHHSSSC--E--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----
T ss_pred ccccCC----CCHHHHHHHH-----HHHhccCC--E--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCC
Confidence 432211 1111222211 11222211 1 1223335789999 67777 999999999999999999 4
Q ss_pred ---CCH-HHHHHHHHHHHHHcC--CceEEEeccCh--H--------------------HHH-hcCEEEEEeCCEE
Q 014366 358 ---LDS-RSELLVRQAVDRLLG--HHTVLVIAHHL--E--------------------TVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 358 ---LD~-~~~~~i~~~l~~~~~--~~tvi~itH~~--~--------------------~~~-~~D~i~vl~~G~i 403 (426)
+|. .....+.+.|+++.+ +.|||++||+. + .+. .||+|++|++|+.
T Consensus 163 ~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 163 SGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 455 566778888887742 78999999995 4 454 7999999999875
No 91
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.86 E-value=1.4e-22 Score=220.11 Aligned_cols=181 Identities=17% Similarity=0.220 Sum_probs=134.2
Q ss_pred CCCCcHHHHHHHHhc---------CCCCCccEEEEcCEeCCC---CCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCC
Q 014366 223 PSGGGKSTLAKLLLR---------LYDPLSGCILVDDHDVQN---IRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMT 290 (426)
Q Consensus 223 ~sGsGKSTLl~ll~g---------~~~p~~G~I~~~g~~i~~---~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~ 290 (426)
.+..||+|+.+.+.. -+.|..|+|.++|+++.+ ++..+....+.-++|++..+. + +...+..
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~--- 343 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRP--- 343 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCS---
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcch---
Confidence 466799999988765 245678999999999877 455555444554555443221 1 1122211
Q ss_pred CCCHHHH-----HHHHHHhchHHHHHhcCCCcccc-cCCCCCCCChHHHHHHHHHHHhcCCC--CEEEeeccCCCCCHHH
Q 014366 291 KIDMERV-----EHTARTANADEFVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIARALYQNS--SVLILDEATSALDSRS 362 (426)
Q Consensus 291 ~~~~~~~-----~~~~~~~~l~~~~~~lp~g~~t~-~~~~g~~LSgGqkQRl~iARal~~~p--~illlDEpts~LD~~~ 362 (426)
...++ .++.++.. .+..+ |++.. ++....+|||||||||+||++|..+| ++|||||||++||+..
T Consensus 344 --~~~~i~~~i~~ei~~rl~---~L~~v--GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~ 416 (842)
T 2vf7_A 344 --EQAIALQRMAADLVKRLD---VLLHL--GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPAD 416 (842)
T ss_dssp --SHHHHHHHHHHHHHHHHH---HHHHT--TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGG
T ss_pred --hhHHHHHHHHHHHHHHHH---HHHhC--CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHH
Confidence 11111 12222222 34444 66644 67888999999999999999999999 5999999999999999
Q ss_pred HHHHHHHHHHHcC-CceEEEeccChHHHHhcCEEEEE------eCCEEEEeccccccccCc
Q 014366 363 ELLVRQAVDRLLG-HHTVLVIAHHLETVMMAKRVFLL------DNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 363 ~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~D~i~vl------~~G~i~e~g~~~~l~~~~ 416 (426)
.+.+.+.|+++++ +.|||+|+||++.+..||+|++| ++|+++..|+++++.+++
T Consensus 417 ~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~~ 477 (842)
T 2vf7_A 417 TEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHVP 477 (842)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGCT
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhch
Confidence 9999999999864 78999999999988889999999 799999999998887653
No 92
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.85 E-value=1.3e-21 Score=213.04 Aligned_cols=101 Identities=19% Similarity=0.329 Sum_probs=91.9
Q ss_pred Ccccc-cCCCCCCCChHHHHHHHHHHHhcCCC--CEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHh
Q 014366 316 GYNTH-IGPRGSSLSGGQRQRLAIARALYQNS--SVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMM 391 (426)
Q Consensus 316 g~~t~-~~~~g~~LSgGqkQRl~iARal~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~ 391 (426)
|++.. ++....+|||||||||+||++|..+| ++|||||||++||+...+.+.+.|+++++ +.|||+|+||++.+..
T Consensus 492 GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ 571 (972)
T 2r6f_A 492 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA 571 (972)
T ss_dssp TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHS
T ss_pred CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 66643 67888999999999999999999985 99999999999999999999999999864 7899999999999989
Q ss_pred cCEEEEE------eCCEEEEeccccccccCc
Q 014366 392 AKRVFLL------DNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 392 ~D~i~vl------~~G~i~e~g~~~~l~~~~ 416 (426)
||+|++| ++|+++..|+++++.++.
T Consensus 572 ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~~ 602 (972)
T 2r6f_A 572 ADYLIDIGPGAGIHGGEVVAAGTPEEVMNDP 602 (972)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECTTTTTTCT
T ss_pred CCEEEEeCCCccCCCCEEEEecCHHHHHhhh
Confidence 9999999 799999999998887653
No 93
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.85 E-value=2.5e-21 Score=212.80 Aligned_cols=167 Identities=16% Similarity=0.196 Sum_probs=118.8
Q ss_pred ccEEEEeEEEEeCC---CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHH--------hcCCCCCccEEEEcCEeCC
Q 014366 186 GDVKFCNISFKYAD---NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLL--------LRLYDPLSGCILVDDHDVQ 254 (426)
Q Consensus 186 ~~i~~~~v~~~y~~---~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll--------~g~~~p~~G~I~~~g~~i~ 254 (426)
+.|++++...-+-. +.+.+++|++|++++|++++|+|||||||||++|++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 35777776443311 124689999999999999999999999999999999 56555543321
Q ss_pred CCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHH
Q 014366 255 NIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQ 334 (426)
Q Consensus 255 ~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQ 334 (426)
++.+. .+|. .+ ++.+.+ ...+|+|+++
T Consensus 702 ----------~~~~d---~i~~-------~i-------------------g~~d~l--------------~~~lStf~~e 728 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RV-------------------GAGDSQ--------------LKGVSTFMAE 728 (934)
T ss_dssp ----------EECCS---EEEE-------EC-------------------C-----------------------CHHHHH
T ss_pred ----------chHHH---HHHH-------hc-------------------CchhhH--------------HHhHhhhHHH
Confidence 11000 0110 01 111111 1357888888
Q ss_pred HHHHHHHh--cCCCCEEEeeccCCCCCHHHHHHH-HHHHHHHc--CCceEEEeccChHHHHhcCEEEEEeCCEEEEeccc
Q 014366 335 RLAIARAL--YQNSSVLILDEATSALDSRSELLV-RQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRS 409 (426)
Q Consensus 335 Rl~iARal--~~~p~illlDEpts~LD~~~~~~i-~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~ 409 (426)
+..+|+++ +.+|+++||||||+|+|+.....+ ...++.+. .++|+|++||+.+....||++..+++|++...+++
T Consensus 729 ~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~ 808 (934)
T 3thx_A 729 MLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTE 808 (934)
T ss_dssp HHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEET
T ss_pred HHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecC
Confidence 88888888 999999999999999999988777 55555554 37899999999988889999999999999988776
Q ss_pred cccc
Q 014366 410 TLLG 413 (426)
Q Consensus 410 ~~l~ 413 (426)
+.+.
T Consensus 809 ~~l~ 812 (934)
T 3thx_A 809 ETLT 812 (934)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 6543
No 94
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.84 E-value=1.9e-21 Score=203.39 Aligned_cols=153 Identities=14% Similarity=0.069 Sum_probs=117.6
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCC
Q 014366 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDL 288 (426)
Q Consensus 209 sl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~ 288 (426)
+..+++|++++|+||||||||||++.++|..+|+ |+ +.+.+++|++. .++.++....
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~-- 331 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSW-- 331 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTT--
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHc--
Confidence 3489999999999999999999999999998875 53 11456666652 2444554211
Q ss_pred CCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHH-----HH
Q 014366 289 MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR-----SE 363 (426)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~-----~~ 363 (426)
..+.++ +.. .|+.......+.+|||||+||+++||++..+|+++|+| ||++||.. .+
T Consensus 332 --g~~~~~------------~~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 332 --GMDFEE------------MER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp --SCCHHH------------HHH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred --CCCHHH------------HHh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 112111 111 13444455667899999999999999999999999999 99999999 89
Q ss_pred HHHHHHHHHHc-CCceEEEeccCh----------HHHH-hcCEEEEEeCCE
Q 014366 364 LLVRQAVDRLL-GHHTVLVIAHHL----------ETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 364 ~~i~~~l~~~~-~~~tvi~itH~~----------~~~~-~~D~i~vl~~G~ 402 (426)
+.+.+.++.++ .+.|+|++||+. ..+. .||+|++|++|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999888775 478999999998 6665 699999999886
No 95
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.84 E-value=5.6e-21 Score=194.95 Aligned_cols=74 Identities=23% Similarity=0.242 Sum_probs=68.1
Q ss_pred CCCChHHHHHHHHHHHhc----CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEEeccChHHHHhcCEEEEEe
Q 014366 326 SSLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLVIAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~----~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~D~i~vl~ 399 (426)
..||||||||++||++|+ .+|+++||||||++||+.....+.+.|+++.+ +.++|++||+...+..||+++++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 359999999999999999 68999999999999999999999999998753 679999999988888899999986
No 96
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.84 E-value=1e-21 Score=212.30 Aligned_cols=146 Identities=20% Similarity=0.236 Sum_probs=113.3
Q ss_pred CccEEEEeEEEEeCC---CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-CCccEEEEcCEeCCCCCHHH
Q 014366 185 NGDVKFCNISFKYAD---NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-PLSGCILVDDHDVQNIRLDS 260 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~---~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-p~~G~I~~~g~~i~~~~~~~ 260 (426)
.+.|++++. ++|- +...+++|+||+ |++++|+||||||||||+|+++|+.. |+.|.+. . .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------p-----a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------P-----A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------S-----S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------e-----h
Confidence 346888887 4443 235799999999 99999999999999999999999874 6778652 1 1
Q ss_pred HhcceEEEecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHH
Q 014366 261 LRRHVGLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIA 339 (426)
Q Consensus 261 ~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iA 339 (426)
.+..+++++| +|. .++.||+.. .+|+|++|++.+|
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~-----------------------------------------g~S~~~~e~~~la 647 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG-----------------------------------------GKSTFMVEMEEVA 647 (765)
T ss_dssp SEEEECCCSE---EEEECCC-----------------------------------------------CCSHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh-----------------------------------------cccHHHHHHHHHH
Confidence 1456888877 454 366665421 3589999999999
Q ss_pred HHh--cCCCCEEEeecc---CCCCCHHHH-HHHHHHHHHHcCCceEEEeccChHHHHhc
Q 014366 340 RAL--YQNSSVLILDEA---TSALDSRSE-LLVRQAVDRLLGHHTVLVIAHHLETVMMA 392 (426)
Q Consensus 340 Ral--~~~p~illlDEp---ts~LD~~~~-~~i~~~l~~~~~~~tvi~itH~~~~~~~~ 392 (426)
+++ +.+|+++||||| |++||+.+. ..+.+.|.+ .++|+|++||+.+....|
T Consensus 648 ~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 648 LILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 999 999999999999 999999876 578888876 478999999999887655
No 97
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.84 E-value=8.1e-24 Score=189.17 Aligned_cols=135 Identities=17% Similarity=0.212 Sum_probs=98.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEeCCCCC---HHHHh-cceE----EEecCCCCCcccHHHHHc
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHDVQNIR---LDSLR-RHVG----LVSQDITLFSGTVAENIG 284 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~I~~~g~~i~~~~---~~~~r-~~i~----~v~Q~~~lf~~ti~eni~ 284 (426)
++++|+|+||||||||+++|+|+++|+ .|.|.+||.++.+++ .+.+| ++++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999987765 56777 4688 899998877 111
Q ss_pred CCCCCCCCCHHHHHHHHHHhchHHHHHh-cCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEE-------EeeccCC
Q 014366 285 YRDLMTKIDMERVEHTARTANADEFVRT-LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVL-------ILDEATS 356 (426)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~il-------llDEpts 356 (426)
+ +.+ . .+++++++.. +| |+||.++|+ ||||||||++||||++++|++. +=|.|..
T Consensus 77 -~------~~~-~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~ 139 (171)
T 2f1r_A 77 -V------SEE-E-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVD 139 (171)
T ss_dssp -C------CHH-H-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCS
T ss_pred -C------Chh-h-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccCccceEEEEecCCcc
Confidence 1 111 1 6789999999 99 999999995 9999999999999999999873 2244421
Q ss_pred ---CCCHHHHHHHHHHHHHH
Q 014366 357 ---ALDSRSELLVRQAVDRL 373 (426)
Q Consensus 357 ---~LD~~~~~~i~~~l~~~ 373 (426)
-+|....+.+.+.+.+.
T Consensus 140 ~~~~f~~~~~~~~a~~i~~~ 159 (171)
T 2f1r_A 140 GHKWFRRDEVERIAEFILSL 159 (171)
T ss_dssp SSCEECTTCHHHHHHHHHHH
T ss_pred cCcccCcccHHHHHHHHHHH
Confidence 23444556666666443
No 98
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.83 E-value=2.4e-22 Score=188.81 Aligned_cols=180 Identities=14% Similarity=0.068 Sum_probs=112.2
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHh--cCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL--RLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~--g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
+++++++..|+.-+ .++.+ .|++|++++|+||||||||||+++|+ |+.++.+|.+++++.+... .....++.+
T Consensus 7 ~~~~~i~tg~~~lD-~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 81 (251)
T 2ehv_A 7 QPVRRVKSGIPGFD-ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMASF 81 (251)
T ss_dssp -CCCEECCSCTTTG-GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHTT
T ss_pred cccceeecCCHhHH-HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHHc
Confidence 45566666554321 23433 68999999999999999999999999 7756778888887754221 122334568
Q ss_pred EEEecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 266 GLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 266 ~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
++++|+...+. .++.++...... ....+.... . ...+-++.++...+..-..
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---------~---------------~~~~~~~~~~~~~~~l~~~ 134 (251)
T 2ehv_A 82 GWDFEKYEKEGKIAIVDGVSSVVG---LPSEEKFVL---------E---------------DRFNVDNFLRYIYRVVKAI 134 (251)
T ss_dssp TCCHHHHHHTTSEEEEC----------------------------------------------CCHHHHHHHHHHHHHHT
T ss_pred CCChHHHhhcCCEEEEEccccccc---cccccceec---------c---------------CcccHHHHHHHHHHHHHhh
Confidence 88888764432 244444322110 000000000 0 1223444444444444457
Q ss_pred CCCEEEeeccCCCCC-----HHHHHHHHHHHHHHc-CCceEEEeccChHHH----------Hhc-CEEEEEe
Q 014366 345 NSSVLILDEATSALD-----SRSELLVRQAVDRLL-GHHTVLVIAHHLETV----------MMA-KRVFLLD 399 (426)
Q Consensus 345 ~p~illlDEpts~LD-----~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~----------~~~-D~i~vl~ 399 (426)
+|+++++||||+++| +..++.+.+.++.++ .++|+|++||+++.+ ..| |+|++|+
T Consensus 135 ~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 135 NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 999999999999997 666666888887775 478999999999886 467 9999995
No 99
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.83 E-value=4.8e-22 Score=187.69 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=101.2
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 281 (426)
.++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++.....|+.+
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~ 77 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAEQ 77 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHhH
Confidence 46999999999999999999999999999999999976 555443 3577899999996333459999
Q ss_pred HHcCCCCCCC------CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccC
Q 014366 282 NIGYRDLMTK------IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT 355 (426)
Q Consensus 282 ni~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpt 355 (426)
|+.+...... .+.+.+.+.++. +..+.+. ....||+||+||+++ ++++.+|+++|+|||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~----~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~ 143 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTV----EVPTYDFVTHSRLPE-TTVVYPADVVLFEGIL 143 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCE----EECCEETTTTEECSS-CEEECCCSEEEEECTT
T ss_pred hhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCe----ecccccccccCccCc-eEEecCCCEEEEeCcc
Confidence 8764221111 122222222221 1112222 346899999999988 6889999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHcCCceEEEeccChHHH-H-hcCEEEEEeCCE
Q 014366 356 SALDSRSELLVRQAVDRLLGHHTVLVIAHHLETV-M-MAKRVFLLDNGK 402 (426)
Q Consensus 356 s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~-~-~~D~i~vl~~G~ 402 (426)
...|.. +.++ .+.+++++||+...+ + .++++ ++|+
T Consensus 144 ~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 144 VFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp TTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred ccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 887764 2222 267999999984433 4 34444 6674
No 100
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.82 E-value=2e-20 Score=163.08 Aligned_cols=81 Identities=32% Similarity=0.381 Sum_probs=72.1
Q ss_pred CCCCCCCChHHHHHHHHH------HHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCE
Q 014366 322 GPRGSSLSGGQRQRLAIA------RALYQNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKR 394 (426)
Q Consensus 322 ~~~g~~LSgGqkQRl~iA------Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~ 394 (426)
..++.+||||||||++|| ||++.+|+++||||||++||+.+.+.+.+.+.++. +++|+|++||+.+....||+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ 131 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 131 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCE
Confidence 456789999999999876 99999999999999999999999999999999875 46899999999966568999
Q ss_pred EEEE--eCCE
Q 014366 395 VFLL--DNGK 402 (426)
Q Consensus 395 i~vl--~~G~ 402 (426)
+++| ++|.
T Consensus 132 ii~l~~~~g~ 141 (148)
T 1f2t_B 132 VIRISLENGS 141 (148)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEcCCCe
Confidence 9999 4564
No 101
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.82 E-value=2.4e-21 Score=179.68 Aligned_cols=152 Identities=20% Similarity=0.231 Sum_probs=103.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-------CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHH
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDP-------LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI 283 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-------~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni 283 (426)
.+++|++++|+||||||||||+++|+|.+.| ..|.+++++.+. .. ++++++++|+..+++.|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 5899999999999999999999999996655 445888887642 11 2347788888888877999998
Q ss_pred cCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh--cCCCCEEEeeccCCCCCHH
Q 014366 284 GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL--YQNSSVLILDEATSALDSR 361 (426)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal--~~~p~illlDEpts~LD~~ 361 (426)
.+.... +........+. +.+.+. +++ ..+|+++++||||+.+|+.
T Consensus 95 ~~~~~~---~~~~~~~~~~~--~~~~~~----------------------------~~~~~~~~~~llilDe~~~~l~~~ 141 (231)
T 4a74_A 95 YVARAF---NSNHQMLLVQQ--AEDKIK----------------------------ELLNTDRPVKLLIVDSLTSHFRSE 141 (231)
T ss_dssp EEEECC---SHHHHHHHHHH--HHHHHH----------------------------HHTTSSSCEEEEEEETSSHHHHHH
T ss_pred EEEecC---ChHHHHHHHHH--HHHHHH----------------------------HhcccCCceeEEEECChHHHhccc
Confidence 775321 11111111110 111111 111 3589999999999999984
Q ss_pred -------HH-----HHHHHHHHHHc--CCceEEEeccChH----HHH-hcCEEEEEeCC
Q 014366 362 -------SE-----LLVRQAVDRLL--GHHTVLVIAHHLE----TVM-MAKRVFLLDNG 401 (426)
Q Consensus 362 -------~~-----~~i~~~l~~~~--~~~tvi~itH~~~----~~~-~~D~i~vl~~G 401 (426)
.+ ..+.+.|.++. .+.|||++||..+ .+. .||++++|++|
T Consensus 142 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 142 YIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 21 25666666653 3789999999544 465 69999999976
No 102
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.81 E-value=6.3e-20 Score=200.55 Aligned_cols=137 Identities=18% Similarity=0.306 Sum_probs=107.6
Q ss_pred CCcccHHHHHcCCCCCCCCCHHH-------HHHHHHHhchHHHHHhcCCCcccc-cCCCCCCCChHHHHHHHHHHHhcCC
Q 014366 274 LFSGTVAENIGYRDLMTKIDMER-------VEHTARTANADEFVRTLPQGYNTH-IGPRGSSLSGGQRQRLAIARALYQN 345 (426)
Q Consensus 274 lf~~ti~eni~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~lp~g~~t~-~~~~g~~LSgGqkQRl~iARal~~~ 345 (426)
++..||.|++.|.... ..+.++ +.+..++. +++..+ |++.. ++....+|||||||||+||++|..+
T Consensus 466 ~~~ltV~e~l~f~enl-~l~~~~~~i~~~i~~ei~~Rl---~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 466 VCELSIADCADFLNAL-TLGPREQAIAGQVLKEIRSRL---GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp SSHHHHHHHHHTTTTT-TSCHHHHHHHHHHHHHHHHHH---HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHHTTC
T ss_pred HhhCCHHHHHHHHHhc-CCCHHHhHHHHHHHHHHHHHH---HHHhhC--CCCccccCCCcccCCHHHHHHHHHHHHHhhC
Confidence 3456999999885432 223311 11222222 233333 66643 6778899999999999999999999
Q ss_pred --CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChHHHHhcCEEEEE------eCCEEEEeccccccccCc
Q 014366 346 --SSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLETVMMAKRVFLL------DNGKLEELNRSTLLGSNH 416 (426)
Q Consensus 346 --p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~D~i~vl------~~G~i~e~g~~~~l~~~~ 416 (426)
|++|||||||++||+...+.+.+.|++++ .+.|||+|+||++.+..||+|++| ++|+++..|+++++...+
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~~ 619 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNK 619 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHHCT
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhhhh
Confidence 58999999999999999999999999886 478999999999999899999999 789999999998776543
No 103
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.81 E-value=2.4e-23 Score=208.44 Aligned_cols=177 Identities=20% Similarity=0.196 Sum_probs=138.2
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ccEEEEcCEeCCCCCHHHHhcceEEEec-----CCCCCc
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHDVQNIRLDSLRRHVGLVSQ-----DITLFS 276 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~-~G~I~~~g~~i~~~~~~~~r~~i~~v~Q-----~~~lf~ 276 (426)
++|++++ +++|++++|+|||||||||++++|+|+++|+ +|+|.+.|.++. + .++..+++|+| ++..|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3667665 8999999999999999999999999999998 899988776653 2 35678999999 888899
Q ss_pred ccHHHHHcCCCCC----CCCCHHHHHHHHHHhch-----------------HHHH------------HhcCCCcccccCC
Q 014366 277 GTVAENIGYRDLM----TKIDMERVEHTARTANA-----------------DEFV------------RTLPQGYNTHIGP 323 (426)
Q Consensus 277 ~ti~eni~~~~~~----~~~~~~~~~~~~~~~~l-----------------~~~~------------~~lp~g~~t~~~~ 323 (426)
.++++|+...... ...+.+.+..+++.++. +..+ ..++.++++.+++
T Consensus 200 ~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 200 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 9999999874210 01155666666665432 1221 1245688999999
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCE--EEeeccCCCCCHH----H-----HHHHHHHHHHHcCCceEEEeccChH
Q 014366 324 RGSSLSGGQRQRLAIARALYQNSSV--LILDEATSALDSR----S-----ELLVRQAVDRLLGHHTVLVIAHHLE 387 (426)
Q Consensus 324 ~g~~LSgGqkQRl~iARal~~~p~i--lllDEpts~LD~~----~-----~~~i~~~l~~~~~~~tvi~itH~~~ 387 (426)
++..+|+| ||+++||+++.+|++ +|+||+|++||.. + +..+.+.+....+++|.+.++||++
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 352 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 352 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSC
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHc
Confidence 88888999 999999999999999 9999999999965 2 3346666776778899999999986
No 104
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.80 E-value=7.8e-23 Score=188.07 Aligned_cols=142 Identities=13% Similarity=0.081 Sum_probs=109.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc---ccHHHHHcCCCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS---GTVAENIGYRDL 288 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~---~ti~eni~~~~~ 288 (426)
.++|++++|+||||||||||+++|+|+++| .++|++|++.+++ .|+++|..+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999875 5899999998873 378887755321
Q ss_pred C-CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH----HHHHHHHHHhcCCCCEEEeeccCCC------
Q 014366 289 M-TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ----RQRLAIARALYQNSSVLILDEATSA------ 357 (426)
Q Consensus 289 ~-~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq----kQRl~iARal~~~p~illlDEpts~------ 357 (426)
. ...+.+.+.+.++..++.+.+ ..++..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPV-----------EMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCE-----------EECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCc-----------CCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 1 123445566665554433222 22456788885 5789999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHHH--cCCceEEEeccCh
Q 014366 358 -LDSRSELLVRQAVDRL--LGHHTVLVIAHHL 386 (426)
Q Consensus 358 -LD~~~~~~i~~~l~~~--~~~~tvi~itH~~ 386 (426)
||+..+..+.+.+.+. .+++|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998775 2478999999985
No 105
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.80 E-value=1.6e-23 Score=209.01 Aligned_cols=225 Identities=14% Similarity=0.085 Sum_probs=151.3
Q ss_pred HHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCC-CCCCccE-
Q 014366 112 CGGSLLVSG-GSFDGCSLVSFITSLVFMIEPIQGVGKAYNEFKQGEPAIERLFDLTKFKSKVIEKPDAVSL-DHINGDV- 188 (426)
Q Consensus 112 ~~g~~lv~~-g~l~~g~l~~~~~~~~~~~~p~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~-~~~~~~i- 188 (426)
+.|.+.+.. +.++.+.+.+|+.++..+..| .+......+..+..+.+|+..++ ++........... ....+.+
T Consensus 53 ~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~it 128 (361)
T 2gza_A 53 RASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRRT 128 (361)
T ss_dssp ETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCCC
T ss_pred ECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCCC
Confidence 345555554 789999999999887776655 33333333334445566777766 3321111000000 0112234
Q ss_pred --------EEEeEEEE---eCCCCCCcc---------eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE
Q 014366 189 --------KFCNISFK---YADNMPLVL---------DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248 (426)
Q Consensus 189 --------~~~~v~~~---y~~~~~~~l---------~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~ 248 (426)
+|++++|+ |++...++| +++||++++|+.++|+||||||||||+++|+|+++|++|.|.+
T Consensus 129 l~~l~~~g~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~i 208 (361)
T 2gza_A 129 LEDYAQQGFFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITI 208 (361)
T ss_dssp HHHHHHTTTTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEE
T ss_pred HHHHHhcCCcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEE
Confidence 78899998 864223455 9999999999999999999999999999999999999999999
Q ss_pred cCEeCCCCCHHHHhcceEEEe-cCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCC
Q 014366 249 DDHDVQNIRLDSLRRHVGLVS-QDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSS 327 (426)
Q Consensus 249 ~g~~i~~~~~~~~r~~i~~v~-Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~ 327 (426)
+|. .++.....++.+++++ |++.+ .
T Consensus 209 e~~--~e~~~~~~~~~v~~v~~q~~~~----------------------------------------------------~ 234 (361)
T 2gza_A 209 EDV--PELFLPDHPNHVHLFYPSEAKE----------------------------------------------------E 234 (361)
T ss_dssp ESS--SCCCCTTCSSEEEEECC----------------------------------------------------------
T ss_pred CCc--cccCccccCCEEEEeecCcccc----------------------------------------------------c
Confidence 985 3444444577899998 65431 0
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCC-ceEEEeccChHHHHhcCEEEEEeCC
Q 014366 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGH-HTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 328 LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~-~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
++++..+|-.|++++..+|+.+++||+.. .++.+.++.+..+ .|++..+|..+....+||+..+..|
T Consensus 235 ~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 235 ENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGSCELTFERLALMVLQ 302 (361)
T ss_dssp ----CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred cccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 12233477788888888999999999986 2345566665544 5788999998766677777777655
No 106
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.80 E-value=1.8e-23 Score=191.29 Aligned_cols=159 Identities=20% Similarity=0.225 Sum_probs=117.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCC-------------CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCccc
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYD-------------PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGT 278 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-------------p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~t 278 (426)
+++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ +|++++|.++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 35899999999999999999999999986 78887 589888878888888765 7999999999
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHH-HhcCCCCEEEeeccCCC
Q 014366 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR-ALYQNSSVLILDEATSA 357 (426)
Q Consensus 279 i~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR-al~~~p~illlDEpts~ 357 (426)
+.+|+ ++. +.++++++++.....- .+..|+|+++.... ++ .|| +++.+|++++|||+|++
T Consensus 76 ~~~n~-~g~-----~~~~i~~~~~~~~~~~-~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~ 136 (198)
T 1lvg_A 76 FSGNL-YGT-----SKEAVRAVQAMNRICV-LDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRL 136 (198)
T ss_dssp ETTEE-EEE-----EHHHHHHHHHTTCEEE-EECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHH
T ss_pred ecCcc-CCC-----CHHHHHHHHHcCCcEE-EECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHh
Confidence 99997 542 4566777776422110 01123344443221 12 567 89999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeC
Q 014366 358 LDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDN 400 (426)
Q Consensus 358 LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~ 400 (426)
+|.++++.|.+.|.+..++ +.++| +. ..+|+|+++++
T Consensus 137 ~d~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 137 RNTETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HTCSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred cCCCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 9999999999999876543 35677 33 78999988864
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.80 E-value=8.6e-21 Score=188.38 Aligned_cols=163 Identities=20% Similarity=0.163 Sum_probs=111.5
Q ss_pred cceee-eEEEeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCc----cE-EEEcCEeCCCCCHHHHhcceEEEecCCCCC
Q 014366 204 VLDQL-NLHIRAGETVALIGPSGGGKSTLAKLLLRLY--DPLS----GC-ILVDDHDVQNIRLDSLRRHVGLVSQDITLF 275 (426)
Q Consensus 204 ~l~~i-sl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~--~p~~----G~-I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf 275 (426)
.|+.+ ++.+++|++++|+||||||||||++.+++.+ +|++ |. |++++.+.. .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 45655 5799999999999999999999999999998 6776 67 899987641 245688899999888
Q ss_pred cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc-------CCCCE
Q 014366 276 SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY-------QNSSV 348 (426)
Q Consensus 276 ~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~-------~~p~i 348 (426)
..++.+|+.+.... + |.+|+|++.++++++ .+|++
T Consensus 193 ~~~v~~ni~~~~~~---~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~l 234 (349)
T 1pzn_A 193 PDEVLKHIYVARAF---N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKL 234 (349)
T ss_dssp HHHHGGGEEEEECC---S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEE
T ss_pred HHHHhhCEEEEecC---C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCE
Confidence 78999999775321 1 223444444444444 78999
Q ss_pred EEeeccCCCCCHHH------------HHHHHHHHHHHc--CCceEEEeccChHHHH-hcCEEEEEeCCEEEEecccc
Q 014366 349 LILDEATSALDSRS------------ELLVRQAVDRLL--GHHTVLVIAHHLETVM-MAKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 349 lllDEpts~LD~~~------------~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~D~i~vl~~G~i~e~g~~~ 410 (426)
+|+||||+++|+.. ...+...|.++. .+.|||+++|...... .++...+...|++.+.+.+.
T Consensus 235 lIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~ 311 (349)
T 1pzn_A 235 LIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATL 311 (349)
T ss_dssp EEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSE
T ss_pred EEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcE
Confidence 99999999999863 244555555543 3689999999876553 23445566667766665543
No 108
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.80 E-value=2.6e-23 Score=207.87 Aligned_cols=177 Identities=15% Similarity=0.136 Sum_probs=128.3
Q ss_pred cceeeeEEEeC--CCEEEEECCCCCcHHHHHHHHhcCCCCCc----cEEEEc----CEeCCCCCHHHHhcceEEEecCCC
Q 014366 204 VLDQLNLHIRA--GETVALIGPSGGGKSTLAKLLLRLYDPLS----GCILVD----DHDVQNIRLDSLRRHVGLVSQDIT 273 (426)
Q Consensus 204 ~l~~isl~i~~--Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~----G~I~~~----g~~i~~~~~~~~r~~i~~v~Q~~~ 273 (426)
+.+.|+++|++ |++++|+||||||||||+++|+|+++|++ |+|+++ |.++ ..+..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45679999999 99999999999999999999999999999 999874 5554 3444455 55999999988
Q ss_pred CCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc-CCCCEEEee
Q 014366 274 LFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY-QNSSVLILD 352 (426)
Q Consensus 274 lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~-~~p~illlD 352 (426)
+|..|++||+.++.. +..... . ..+|+|++||..+++++. .+|++++||
T Consensus 235 ~~~~t~~~nl~~~~~--~~~~~~-------------~---------------~~~~~~~~~~~~i~~~~~~~~~~lllLd 284 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDT--DFITTQ-------------A---------------FCIQYEGKAHPFLDSMIKEYPFDVTILL 284 (365)
T ss_dssp HHHHHHCSSEEEESS--CHHHHH-------------H---------------HHHHHHSCCCHHHHHHHHHSCCSEEEEE
T ss_pred HHHHhccCCEEEEeC--CchHHH-------------H---------------HHHHHcCCCCHHHHHHHhhcCCCEEEEC
Confidence 888999999987542 110100 0 123556678888888774 689999999
Q ss_pred c---cC------CCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHHhcCEEEEEeCCEEEEecccccccc
Q 014366 353 E---AT------SALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLGS 414 (426)
Q Consensus 353 E---pt------s~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~~ 414 (426)
| |+ +++|+..+..+.+.|.++.+ +.++++++|.-...+.+|++..+++ +.+.+++++|.+
T Consensus 285 E~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 285 KNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp ECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred CCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 9 65 58999999999999977643 6789999976444456676666653 445556666544
No 109
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.80 E-value=2.3e-21 Score=188.69 Aligned_cols=162 Identities=15% Similarity=0.119 Sum_probs=82.2
Q ss_pred EeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC-CCCCccEEEEcCEeCCCCCHHHHhcceEEEe
Q 014366 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL-YDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~-~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~ 269 (426)
+||+++|++. .++++++|+| +|+||||||||||++.|+|. ..|++| |.++|.++.. . .. ++.+++++
T Consensus 2 ~~l~~~~~~~--~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t-~~-~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T-VQ-IEASTVEI 69 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEE
T ss_pred CCCcceECCE--EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c-ce-EeeEEEEe
Confidence 5788999753 5999999998 99999999999999999998 889999 8888877643 1 11 35689999
Q ss_pred cCCCCC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCE
Q 014366 270 QDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSV 348 (426)
Q Consensus 270 Q~~~lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~i 348 (426)
|++.++ ..|+.|+..++.... ..++.....+. +.+..+.. ..++|||||||+.+|||++ +
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~--~~e~~~~l~~~--l~~~~~~~-----------~~~~sgg~rqrv~~ara~~----l 130 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAIN--CRDCFKTIISY--IDEQFERY-----------LHDESGLNRRHIIDNRVHC----C 130 (301)
T ss_dssp C---CCEEEEEEEEC-------------CTTHHHH--HHHHHHHH-----------HHHHTSSCCTTCCCCCCCE----E
T ss_pred cCCCcccCcchhhhhhhhhhcC--cHHHHHHHHHH--HHHHHHHH-----------HHHhCHHhhhhhhhhhhhh----e
Confidence 988765 459999987753211 01111111111 12222221 2478999999999999986 9
Q ss_pred EEeeccCCC-CCHHHHHHHHHHHHHHcC--CceEEEeccChH
Q 014366 349 LILDEATSA-LDSRSELLVRQAVDRLLG--HHTVLVIAHHLE 387 (426)
Q Consensus 349 lllDEpts~-LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~ 387 (426)
+++||||++ ||+... +.++++.+ +.++|+.+||+.
T Consensus 131 l~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 131 FYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999999985 999874 44444433 468888999973
No 110
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.79 E-value=1.4e-21 Score=207.38 Aligned_cols=187 Identities=14% Similarity=0.222 Sum_probs=119.7
Q ss_pred cEEEEeEEEEeCCCCCCcceee----------eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-CccEEEEcCEeCCC
Q 014366 187 DVKFCNISFKYADNMPLVLDQL----------NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVDDHDVQN 255 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~i----------sl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~I~~~g~~i~~ 255 (426)
.++++|+++.|+...+++++.+ +++++. +||+||||||||||+++|+|++.| ++|.|.++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5789999999975433455444 366664 999999999999999999999988 79999999998632
Q ss_pred --C-CHHHHhcceEEEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH
Q 014366 256 --I-RLDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG 331 (426)
Q Consensus 256 --~-~~~~~r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG 331 (426)
. ....+++.++|++|++.+++. ||+||+.+.. . ...... ..+|
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~--------------~------~~~~~~-----------~~~s-- 133 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ--------------N------AIAGEG-----------MGIS-- 133 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH--------------H------HHHCSS-----------SCCC--
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHHH--------------H------HhcCCc-----------cccc--
Confidence 1 134678899999999998865 9999985320 0 011000 1122
Q ss_pred HHHHHHHHHHhcCCCCEEEeecc------CCCCCHHHHHHHHHHHHHHc-C--CceEEEeccChHH--------HHh---
Q 014366 332 QRQRLAIARALYQNSSVLILDEA------TSALDSRSELLVRQAVDRLL-G--HHTVLVIAHHLET--------VMM--- 391 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEp------ts~LD~~~~~~i~~~l~~~~-~--~~tvi~itH~~~~--------~~~--- 391 (426)
++++.++.+...+|+++++||| |++||+..++.+.+.++++. + +.++++++|+++. +..
T Consensus 134 -~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~ 212 (608)
T 3szr_A 134 -HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP 212 (608)
T ss_dssp -SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS
T ss_pred -hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh
Confidence 2344555556678999999999 99999999999999999863 2 3578889999752 222
Q ss_pred --cCEEEEEeCCEEEEecccc
Q 014366 392 --AKRVFLLDNGKLEELNRST 410 (426)
Q Consensus 392 --~D~i~vl~~G~i~e~g~~~ 410 (426)
...|.|+.++.+++.|+.+
T Consensus 213 ~g~rtI~VlTK~Dlv~~g~~~ 233 (608)
T 3szr_A 213 EGDRTIGILTKPDLVDKGTED 233 (608)
T ss_dssp SCCSEEEEEECGGGSSSSSTT
T ss_pred cCCceEEEecchhhcCcccHH
Confidence 3568899998888877754
No 111
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.79 E-value=4.2e-19 Score=194.64 Aligned_cols=158 Identities=15% Similarity=0.178 Sum_probs=104.8
Q ss_pred cEEEEeEEEEe-----CCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHH
Q 014366 187 DVKFCNISFKY-----ADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSL 261 (426)
Q Consensus 187 ~i~~~~v~~~y-----~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~ 261 (426)
.|.+++...-. +.+.+.+++|+||++++|++++|+||||||||||+|+++++.-..
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a------------------- 700 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA------------------- 700 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-------------------
Confidence 57777754321 112357999999999999999999999999999999997542110
Q ss_pred hcceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 262 RRHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 262 r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
+.-.++|++..-+ ++.+++. ...++.+.+. .+..++|+||+|+..++++
T Consensus 701 -q~g~~vpa~~~~i--~~~d~i~-----------------~~ig~~d~l~-----------~~~stfs~em~~~~~il~~ 749 (918)
T 3thx_B 701 -QIGSYVPAEEATI--GIVDGIF-----------------TRMGAADNIY-----------KGRSTFMEELTDTAEIIRK 749 (918)
T ss_dssp -HHTCCBSSSEEEE--ECCSEEE-----------------EEC---------------------CCHHHHHHHHHHHHHH
T ss_pred -hcCccccchhhhh--hHHHHHH-----------------HhCChHHHHH-----------HhHHHhhHHHHHHHHHHHh
Confidence 0011233221100 0111110 0011111111 1235789999999999999
Q ss_pred hcCCCCEEEeeccCCCCCHHHHHHHH-HHHHHHc--CCceEEEeccChHHHHhcCEE
Q 014366 342 LYQNSSVLILDEATSALDSRSELLVR-QAVDRLL--GHHTVLVIAHHLETVMMAKRV 395 (426)
Q Consensus 342 l~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~--~~~tvi~itH~~~~~~~~D~i 395 (426)
+.+|+++||||||+|||+.....+. ..++.+. .++|+|++||+++....||+.
T Consensus 750 -a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 750 -ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp -CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred -ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 8999999999999999999888887 5566552 478999999999887766653
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.79 E-value=2.7e-20 Score=184.90 Aligned_cols=147 Identities=20% Similarity=0.224 Sum_probs=106.2
Q ss_pred EeEEEEeCCCCCCcceeeeE-------EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ccEEEEcCEeCCCCCHHHHh
Q 014366 191 CNISFKYADNMPLVLDQLNL-------HIRAGETVALIGPSGGGKSTLAKLLLRLYDPL-SGCILVDDHDVQNIRLDSLR 262 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl-------~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~-~G~I~~~g~~i~~~~~~~~r 262 (426)
.+++++|.+...+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ +|.|...+.++ ++. .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence 57778875544567888776 77899999999999999999999999999987 56665544333 221 22
Q ss_pred cceEEEecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 263 RHVGLVSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 263 ~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
...++++|...... ..+..+ +|||||
T Consensus 168 ~~~~~v~q~~~~~~--------------~~~~~~----------------------------------------~La~aL 193 (356)
T 3jvv_A 168 SKKCLVNQREVHRD--------------TLGFSE----------------------------------------ALRSAL 193 (356)
T ss_dssp CSSSEEEEEEBTTT--------------BSCHHH----------------------------------------HHHHHT
T ss_pred ccccceeeeeeccc--------------cCCHHH----------------------------------------HHHHHh
Confidence 33455665432110 001100 999999
Q ss_pred cCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCC
Q 014366 343 YQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNG 401 (426)
Q Consensus 343 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G 401 (426)
..+|+++++|||| |.++.+.+.+. ...++|+++++|+.+.+..|||+++|..|
T Consensus 194 ~~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 194 REDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp TSCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hhCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 9999999999999 77775554444 23478999999999998889999888543
No 113
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.78 E-value=1.5e-21 Score=178.57 Aligned_cols=168 Identities=17% Similarity=0.144 Sum_probs=101.2
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC-----CCCccEEEEc-------CEeCCC
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY-----DPLSGCILVD-------DHDVQN 255 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~-----~p~~G~I~~~-------g~~i~~ 255 (426)
|+++|++|+|+. +++++ |++++|++++|+|+||||||||++.|+|.. .|+.|.+.+. +..+.+
T Consensus 4 l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 4 LNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp -------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred hhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 789999999962 47888 889999999999999999999999999998 8888887542 222211
Q ss_pred ---CC--------HHHHhcceEEEecCCCCCcc-cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccc-cC
Q 014366 256 ---IR--------LDSLRRHVGLVSQDITLFSG-TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTH-IG 322 (426)
Q Consensus 256 ---~~--------~~~~r~~i~~v~Q~~~lf~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-~~ 322 (426)
.. ...+++.+++++|+...+++ .+..++..+. ...++++.+. +... +.... ++
T Consensus 79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~---~~~~~~~~~~---------~~~~--~~~~~~v~ 144 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL---KDLDQQMIEW---------AVDS--NIAVLVLL 144 (210)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC---CHHHHHHHHH---------HHHT--TCCEEEEE
T ss_pred CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC---chhHHHHHHH---------HHHc--CCCeEEEE
Confidence 10 12234444455544332222 3323332211 1111122222 2211 23222 35
Q ss_pred CCCCCCChHHHHH-HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 014366 323 PRGSSLSGGQRQR-LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374 (426)
Q Consensus 323 ~~g~~LSgGqkQR-l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 374 (426)
.+...+|+||||| +..+|+++.+|+.+++|||||++|..+..++.+.|.++.
T Consensus 145 nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 145 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 5666899999999 899999999999999999999999999999999998764
No 114
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.78 E-value=2.1e-20 Score=181.98 Aligned_cols=149 Identities=19% Similarity=0.157 Sum_probs=102.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH----HHH--hcceEEEecCCCCCcc-cHHHHHcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL----DSL--RRHVGLVSQDITLFSG-TVAENIGYR 286 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~----~~~--r~~i~~v~Q~~~lf~~-ti~eni~~~ 286 (426)
+|++++|+|||||||||++++|+|+++|++|+|.++|.|+..... ..+ |..++|++|++.+++. ++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999865431 223 4569999999988765 899998542
Q ss_pred CCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC--EEEeeccCCCCCHHHHH
Q 014366 287 DLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEATSALDSRSEL 364 (426)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~--illlDEpts~LD~~~~~ 364 (426)
.. +.... ..++ .+ |.. ......++..++||++||||+..+|+ ++.|| |+++ .
T Consensus 181 ~~-------------~~~d~-~llD-t~-G~~---~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~------~ 234 (304)
T 1rj9_A 181 KA-------------RGYDL-LFVD-TA-GRL---HTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTG------Q 234 (304)
T ss_dssp HH-------------HTCSE-EEEC-CC-CCC---TTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBC------T
T ss_pred Hh-------------CCCCE-EEec-CC-CCC---CchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHH------H
Confidence 10 00000 0011 11 110 01112346667999999999999999 44455 4444 3
Q ss_pred HHHHHHHHHc--CCceEEEeccChHH
Q 014366 365 LVRQAVDRLL--GHHTVLVIAHHLET 388 (426)
Q Consensus 365 ~i~~~l~~~~--~~~tvi~itH~~~~ 388 (426)
.+.+.++++. .+.|+|++||....
T Consensus 235 ~~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 235 NGLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCccc
Confidence 4444444442 26799999998543
No 115
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.76 E-value=3.3e-20 Score=187.83 Aligned_cols=165 Identities=14% Similarity=0.140 Sum_probs=100.3
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcce
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHV 265 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i 265 (426)
+.|.++|++++|++ ..+++++||+| +|+||||||||||+++|+|...|+.| .+|.++... ....+..+
T Consensus 10 ~~l~~~~l~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred CcEEEEecceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeeeE
Confidence 45889999999975 36999999998 99999999999999999999886665 233332211 11123568
Q ss_pred EEEecCCCCC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcC
Q 014366 266 GLVSQDITLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQ 344 (426)
Q Consensus 266 ~~v~Q~~~lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~ 344 (426)
++++|++.++ ..|+.||+.++.... ....+.. +.+++.. .++.+++||++||||+++
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~---~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~ 135 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVD---NSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMP 135 (418)
T ss_dssp ECC------CEEEEEEECC--------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCC
T ss_pred EEEEecCCcccceeeeechhhhhhcc---chhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhcc
Confidence 9999998877 569999998764311 1111111 2223322 345677889999999999
Q ss_pred CCC---EEEeeccC-CCCCHHHHHHHHHHHHHHcCCceEEEeccChHH
Q 014366 345 NSS---VLILDEAT-SALDSRSELLVRQAVDRLLGHHTVLVIAHHLET 388 (426)
Q Consensus 345 ~p~---illlDEpt-s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 388 (426)
+|+ ++++|||| ++||+... +.++++..+.++|+|.|..+.
T Consensus 136 d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~~v~iIlVinK~Dl 179 (418)
T 2qag_C 136 DNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHEKVNIIPLIAKADT 179 (418)
T ss_dssp CC-CCEEEEECCC-CCSCCHHHH----HHHHHHTTTSEEEEEEESTTS
T ss_pred CCCeeEEEEEecCcccCCCHHHH----HHHHHHhccCcEEEEEEcccC
Confidence 999 99999999 69998874 333444456788888887654
No 116
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.76 E-value=9.3e-20 Score=168.88 Aligned_cols=164 Identities=15% Similarity=0.088 Sum_probs=113.4
Q ss_pred CcceeeeE-EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhc---ceEEEecCCCCCccc
Q 014366 203 LVLDQLNL-HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRR---HVGLVSQDITLFSGT 278 (426)
Q Consensus 203 ~~l~~isl-~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~---~i~~v~Q~~~lf~~t 278 (426)
+.|+++.. .+++|++++|+||||||||||++.+++...+++|.+.+.+.+. +..+++. .+++.+|+...
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---- 82 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE---- 82 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh----
Confidence 46888887 8999999999999999999999999998888888888866443 2333222 23443333211
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC--EEEeeccCC
Q 014366 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS--VLILDEATS 356 (426)
Q Consensus 279 i~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~--illlDEpts 356 (426)
+++..... ... . .. + ..+. ...|.++.++...+.+...+|+ ++++||||+
T Consensus 83 --~~~~~~~~---~~~-~-------------~~--~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 83 --KKLIIIDA---LMK-E-------------KE--D----QWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp --TTEEEEEC---CC--------------------C----TTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred --CCEEEEec---ccc-c-------------cC--c----eeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 11111000 000 0 00 0 0011 2348999998888888778999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHc--CCceEEEeccCh--------HHHH-hcCEEEEEeCC
Q 014366 357 AL--DSRSELLVRQAVDRLL--GHHTVLVIAHHL--------ETVM-MAKRVFLLDNG 401 (426)
Q Consensus 357 ~L--D~~~~~~i~~~l~~~~--~~~tvi~itH~~--------~~~~-~~D~i~vl~~G 401 (426)
.+ |+.....+.+.|+++. .+.|+|++||+. ..+. .||+|++|++.
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88 9988889999998873 368999999998 3354 69999999864
No 117
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.75 E-value=3.3e-19 Score=193.68 Aligned_cols=165 Identities=18% Similarity=0.224 Sum_probs=109.8
Q ss_pred ccEEEEeEEEEeCC-----CCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC-CccEEEEcCEeCCCCCHH
Q 014366 186 GDVKFCNISFKYAD-----NMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILVDDHDVQNIRLD 259 (426)
Q Consensus 186 ~~i~~~~v~~~y~~-----~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~I~~~g~~i~~~~~~ 259 (426)
+.|.+++.. +|- +...+++|+||+ ++|++++|+||||||||||+|+++|+..+ ..|. .+..
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA---- 642 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS----
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch----
Confidence 357777652 221 224689999999 99999999999999999999999997532 2231 1111
Q ss_pred HHhcceEEEecCCCCCc-ccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHH
Q 014366 260 SLRRHVGLVSQDITLFS-GTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAI 338 (426)
Q Consensus 260 ~~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~i 338 (426)
-+..+++++| +|. .++.||+..+ ...+|+++++ ++.
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~--------------------------------------~stf~~e~~~-~~~ 679 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG--------------------------------------RSTFMVEMTE-TAN 679 (800)
T ss_dssp -SEEEECCCCE---EEEEEC-------------------------------------------------CHHHHHH-HHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh--------------------------------------hhhhhHHHHH-HHH
Confidence 1234666655 343 2455544211 1245666654 444
Q ss_pred HHHhcCCCCEEEeeccCCCCCHHHHHHH-HHHHHHHc--CCceEEEeccChHHHHhcCEEEEEeCCEEEEe
Q 014366 339 ARALYQNSSVLILDEATSALDSRSELLV-RQAVDRLL--GHHTVLVIAHHLETVMMAKRVFLLDNGKLEEL 406 (426)
Q Consensus 339 ARal~~~p~illlDEpts~LD~~~~~~i-~~~l~~~~--~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~ 406 (426)
+...+.+|+++|||||++|+|+.....+ .+.++.+. .+.|+|++||+.+....||++..+++|++...
T Consensus 680 il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred HHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 4556899999999999999998766554 56666653 37899999999988778888877788877543
No 118
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.75 E-value=1.2e-19 Score=168.57 Aligned_cols=142 Identities=15% Similarity=0.170 Sum_probs=101.9
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc-cH----HHH
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TV----AEN 282 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p--~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti----~en 282 (426)
-..++|++++|+||||||||||+++|+|+++| .+|.|.+.+.+... ..++.++|+||++..|+. ++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 46789999999999999999999999999986 68999998866432 235679999999988865 66 577
Q ss_pred HcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHH
Q 014366 283 IGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRS 362 (426)
Q Consensus 283 i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~ 362 (426)
+.+.......+.+.+ +.++..++++||| ||+.+
T Consensus 87 ~~~~~~~yg~~~~~v------------------------------------------~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 87 AEVFGNYYGTSREAI------------------------------------------EQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EEETTEEEEEEHHHH------------------------------------------HHHHTTTCEEEEE-----CCHHH
T ss_pred HHHHhccCCCCHHHH------------------------------------------HHHHhcCCeEEEE-----ECHHH
Confidence 654321111122222 2222336999999 99999
Q ss_pred HHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEEeCCEEEEeccccccc
Q 014366 363 ELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLLDNGKLEELNRSTLLG 413 (426)
Q Consensus 363 ~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl~~G~i~e~g~~~~l~ 413 (426)
...+.+.+. ++.||+++||+++.+.. |+ +++| .++++++.
T Consensus 120 ~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~ 159 (219)
T 1s96_A 120 AQQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIA 159 (219)
T ss_dssp HHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHH
T ss_pred HHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHH
Confidence 999998875 47899999999998764 32 6667 45555554
No 119
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.74 E-value=5e-18 Score=151.66 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=71.5
Q ss_pred CCCCCChHHHHHHHHHHHhc----CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEE-
Q 014366 324 RGSSLSGGQRQRLAIARALY----QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLL- 398 (426)
Q Consensus 324 ~g~~LSgGqkQRl~iARal~----~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl- 398 (426)
....||||||||++|||+++ ++|+++||||||++||+.++..+.+.|+++.++.++|+|||+......||+++.+
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEE
Confidence 45789999999999999996 5679999999999999999999999999987778999999999888899999855
Q ss_pred -eCCEE
Q 014366 399 -DNGKL 403 (426)
Q Consensus 399 -~~G~i 403 (426)
++|..
T Consensus 141 ~~~g~s 146 (173)
T 3kta_B 141 MRDGVS 146 (173)
T ss_dssp EETTEE
T ss_pred ecCCEE
Confidence 56753
No 120
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=1.5e-18 Score=175.14 Aligned_cols=180 Identities=14% Similarity=0.189 Sum_probs=114.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcc
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGET--VALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRH 264 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~--~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~ 264 (426)
.+++++ +++|++. + |+++||++++|++ ++|+||||||||||+++|+|+. ++|.++....+...++.
T Consensus 16 ~l~~~~-~~~y~~~--~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGFDSL--P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQS 83 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEE
T ss_pred eEEEee-EEEECCe--e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEee
Confidence 456666 7888653 4 9999999999999 9999999999999999999984 34544443333334567
Q ss_pred eEEEecCCCCCc-ccHHHHHcCCCCCCCCCHHH----HHHHHHHhchHHHHHhc-------CCCcccc-------cCCCC
Q 014366 265 VGLVSQDITLFS-GTVAENIGYRDLMTKIDMER----VEHTARTANADEFVRTL-------PQGYNTH-------IGPRG 325 (426)
Q Consensus 265 i~~v~Q~~~lf~-~ti~eni~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~l-------p~g~~t~-------~~~~g 325 (426)
++|++|++.++. .|+.||+.++... +... +.+.++. ...+++... +..-|+. +-+.+
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~---~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQI---NKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-C---CHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred EEEEeecCccccccchhhhhhhhhcc---ccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 999999998874 5999999887532 2211 1111111 122233322 1112222 12334
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHH-Hc-CCceEEEeccC
Q 014366 326 SSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDR-LL-GHHTVLVIAHH 385 (426)
Q Consensus 326 ~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~-~~-~~~tvi~itH~ 385 (426)
..|+-.+ +.++++|..+++++++|||+..|.+.....+.+.+++ +. .+.+|+.++.+
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 4677665 7999999999999999999999999888888888886 64 36788888865
No 121
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.69 E-value=1.9e-19 Score=174.11 Aligned_cols=131 Identities=15% Similarity=0.094 Sum_probs=93.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCC-C
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTK-I 292 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~-~ 292 (426)
++.+++|+|+||||||||+++|.+++++. | . . ++.+.+|+||+++|+.++++|+.++.+... .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 57799999999999999999999999764 2 0 1 445667799999999999999876421000 0
Q ss_pred CHHHHHHHHHHhchHHHHHhcCCCcccc------cCCCCCCCChHHHHHHHHH--HHhcCCCCEEEeeccCCCCCHHH
Q 014366 293 DMERVEHTARTANADEFVRTLPQGYNTH------IGPRGSSLSGGQRQRLAIA--RALYQNSSVLILDEATSALDSRS 362 (426)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~~~lp~g~~t~------~~~~g~~LSgGqkQRl~iA--Ral~~~p~illlDEpts~LD~~~ 362 (426)
.......+.+...+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|+|+||||+++|++.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000001112234567888899997754 4566789999999999998 555 999999999999999864
No 122
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.68 E-value=2e-17 Score=158.81 Aligned_cols=151 Identities=16% Similarity=0.161 Sum_probs=99.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHc-CCCCC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIG-YRDLM 289 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~-~~~~~ 289 (426)
.+++|++++|+||||||||||++.+++... .|.+. .|.+... ...+.|+..+... ..+..++. ++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-- 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-- 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT--
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh--
Confidence 378999999999999999999999998664 56663 3443211 2457777765432 12222221 121
Q ss_pred CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCC--CCCHHHH---H
Q 014366 290 TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS--ALDSRSE---L 364 (426)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts--~LD~~~~---~ 364 (426)
..+.......++.. ++....+.+...||+||+|++ |+++.+|+++++||||+ ++|.... .
T Consensus 93 -~~~~~~~~~~~~~l-----------~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 93 -HLSAEERQAVADGL-----------LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp -TSCHHHHHHHHHHE-----------EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred -hcChhhhhhccCce-----------EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 12223322333322 233334556789999998865 68889999999999999 9998544 7
Q ss_pred HHHHHHHHHc--CCceEEEeccChHHH
Q 014366 365 LVRQAVDRLL--GHHTVLVIAHHLETV 389 (426)
Q Consensus 365 ~i~~~l~~~~--~~~tvi~itH~~~~~ 389 (426)
.+.+.|+++. .++|||+++|.....
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 7777887763 378999999997654
No 123
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.68 E-value=4.5e-19 Score=160.04 Aligned_cols=152 Identities=16% Similarity=0.060 Sum_probs=95.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCC-
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLM- 289 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~- 289 (426)
.+++|++++|+|||||||||++++|+|. |+.|.|.++|.++.... ..++.++|++|++. ...|+.+|+.+....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998 78899999987653221 11234678888654 345888887532100
Q ss_pred --CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHH
Q 014366 290 --TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVR 367 (426)
Q Consensus 290 --~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~ 367 (426)
.+.. ..++..+...++..+.. .+.++..+|+|++||+++||++.++|+++ +|+...+.+.
T Consensus 80 ~~~~~~-~~~~~~~~~~~l~~~~~---------~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 80 AKEGYF-VILDGVVRPDWLPAFTA---------LARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp HHTSCE-EEECSCCCTTTTHHHHT---------TCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred hccCCe-EEEeccCcHHHHHHHHh---------cCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 0000 00000000011111110 12334679999999999999999999876 6888777777
Q ss_pred HHHHHHcCCceEEEeccC
Q 014366 368 QAVDRLLGHHTVLVIAHH 385 (426)
Q Consensus 368 ~~l~~~~~~~tvi~itH~ 385 (426)
+.+..+.....+++.|++
T Consensus 142 ~~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 142 SQFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HHTTCCGGGGGGEEECTT
T ss_pred HHHhccCcccccEEECCC
Confidence 776654322233444543
No 124
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.68 E-value=8.4e-19 Score=171.91 Aligned_cols=143 Identities=21% Similarity=0.188 Sum_probs=108.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC--------CCCccEEEEcCEeCCCCC---------------HHHHhcceEEE---e
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY--------DPLSGCILVDDHDVQNIR---------------LDSLRRHVGLV---S 269 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~--------~p~~G~I~~~g~~i~~~~---------------~~~~r~~i~~v---~ 269 (426)
++++|+|+||||||||++.|+|+. .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 789999999999987653 23566778888 7
Q ss_pred cCCCC-CcccHHHHHcCCCCCCCCCHHHHHHHH----------------HHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 270 QDITL-FSGTVAENIGYRDLMTKIDMERVEHTA----------------RTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 270 Q~~~l-f~~ti~eni~~~~~~~~~~~~~~~~~~----------------~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
|++.+ |+.++.||..++.+ ..+...+ ..+++.++.+.+ .++|+||
T Consensus 85 q~~~~~~~~~v~E~~~l~~p------~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------------~~ls~g~ 146 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP------GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------------NQFTIAQ 146 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH------HHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------------HHCHHHH
T ss_pred hcCCCCCCEEEEeCCCCCCH------HHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------------hhchHHH
Confidence 88765 57799999977642 1111111 111222222221 2689999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChH
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLE 387 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 387 (426)
+||+..+++++.+|+++ ||| +.+.+.++++..+.||+++||+..
T Consensus 147 ~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 147 SQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp HHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred HHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 99999999999999987 998 677888888777789999999753
No 125
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.65 E-value=3.3e-16 Score=143.99 Aligned_cols=150 Identities=19% Similarity=0.132 Sum_probs=96.0
Q ss_pred cceeeeE-EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 014366 204 VLDQLNL-HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (426)
Q Consensus 204 ~l~~isl-~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~en 282 (426)
.|+++.. .+++|++++|+||||||||||++.+++ ++..+.++++..+ ..+.. .+.+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~------------------~~~~~ 65 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPE------------------RLVQM 65 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHH------------------HHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHH------------------HHHHH
Confidence 5666654 689999999999999999999999999 3333444443321 11111 12221
Q ss_pred HcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChH--HHHHHHHHHHhcCC-CCEEEeeccCCCCC
Q 014366 283 IGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGG--QRQRLAIARALYQN-SSVLILDEATSALD 359 (426)
Q Consensus 283 i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgG--qkQRl~iARal~~~-p~illlDEpts~LD 359 (426)
.... ..+.++ +.+.+. ...+|++ ++|+++.+|+++.+ |+++++||||+.+|
T Consensus 66 ~~~~----~~~~~~------------~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 66 AETR----GLNPEE------------ALSRFI----------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp HHTT----TCCHHH------------HHHHEE----------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred HHhc----CCChHH------------HhhcEE----------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 1110 111111 111110 1133444 36789999999986 99999999999999
Q ss_pred HHHH--------HHHHHHHHHHcC--CceEEEeccChH-------------HHH-hcCEEEEEeCC
Q 014366 360 SRSE--------LLVRQAVDRLLG--HHTVLVIAHHLE-------------TVM-MAKRVFLLDNG 401 (426)
Q Consensus 360 ~~~~--------~~i~~~l~~~~~--~~tvi~itH~~~-------------~~~-~~D~i~vl~~G 401 (426)
+... ..+.+.|+++.+ +.|+|+++|... .+. .||++++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 7432 334555666532 689999999865 344 69999999864
No 126
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.62 E-value=3.8e-19 Score=175.66 Aligned_cols=181 Identities=13% Similarity=0.052 Sum_probs=117.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH----HHHhc
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL----DSLRR 263 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~----~~~r~ 263 (426)
|++++++++|+. ..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+...... ...+.
T Consensus 30 ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 30 AESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 344566677753 358999999999999999999999999999999999999999999999988753221 23467
Q ss_pred ceEEEecCCCCCcc-------------cHHHHHcC----CCCC-----CC--CCHHHHHHHHHH-------------hch
Q 014366 264 HVGLVSQDITLFSG-------------TVAENIGY----RDLM-----TK--IDMERVEHTART-------------ANA 306 (426)
Q Consensus 264 ~i~~v~Q~~~lf~~-------------ti~eni~~----~~~~-----~~--~~~~~~~~~~~~-------------~~l 306 (426)
++++++|++.+|.. +++|.+.. +... .+ .+...+.+.++. ..+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 79999999988742 12222200 0000 00 001111000000 000
Q ss_pred HHHHHhcCCCcc-cccCC-CCCCCChHHHHHHHHHHHhcC------CCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 014366 307 DEFVRTLPQGYN-THIGP-RGSSLSGGQRQRLAIARALYQ------NSSVLILDEATSALDSRSELLVRQAVDRLL 374 (426)
Q Consensus 307 ~~~~~~lp~g~~-t~~~~-~g~~LSgGqkQRl~iARal~~------~p~illlDEpts~LD~~~~~~i~~~l~~~~ 374 (426)
.+.+...|.-+- +..+. ....+|+|++|++..|++++. +|+++. ||++|......+.+.|.+..
T Consensus 188 ~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 188 KKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 000111121110 12221 224579999999999999998 688886 99999999999999987753
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.62 E-value=5.2e-16 Score=144.84 Aligned_cols=146 Identities=20% Similarity=0.253 Sum_probs=89.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhc--CCCC-----CccEEEEcCEeCCCC-CHHHHhcceEEEecCCCCCcccHHHH
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLR--LYDP-----LSGCILVDDHDVQNI-RLDSLRRHVGLVSQDITLFSGTVAEN 282 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g--~~~p-----~~G~I~~~g~~i~~~-~~~~~r~~i~~v~Q~~~lf~~ti~en 282 (426)
-+++|++++|+||||||||||++.+++ ..+| ..|.+++++.+.... ....+.+.+++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5655 678899988652110 112233445655443 4566
Q ss_pred HcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc--CCCCEEEeeccCCCCCH
Q 014366 283 IGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY--QNSSVLILDEATSALDS 360 (426)
Q Consensus 283 i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~--~~p~illlDEpts~LD~ 360 (426)
+.+... .+.++..+.++ -++.++ .+|+++++|||++.+|+
T Consensus 93 ~~~~~~---~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 93 VAYARA---FNTDHQTQLLY-----------------------------------QASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp EEEEEC---CSHHHHHHHHH-----------------------------------HHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred eEEEec---CCHHHHHHHHH-----------------------------------HHHHHHhcCCceEEEEeCchHHHHH
Confidence 554321 12222211111 111111 68999999999999998
Q ss_pred H-------H-----HHHHHHHHHHHc--CCceEEEeccChHHH-------------------H-hcCEEEEEeCC
Q 014366 361 R-------S-----ELLVRQAVDRLL--GHHTVLVIAHHLETV-------------------M-MAKRVFLLDNG 401 (426)
Q Consensus 361 ~-------~-----~~~i~~~l~~~~--~~~tvi~itH~~~~~-------------------~-~~D~i~vl~~G 401 (426)
. + ...+...|.++. .+.|||+++|..... . .||.+++|++|
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 5 3 233444454443 268999999965432 1 59999999875
No 128
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.61 E-value=1e-18 Score=157.79 Aligned_cols=168 Identities=15% Similarity=0.058 Sum_probs=106.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCC-cccHHHHHcCCCCCCCCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMTKID 293 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ti~eni~~~~~~~~~~ 293 (426)
|++++|+|||||||||++++|++ |.+|.+.++|.++... ...++++|....+ ..++++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 68999999999999999999997 6789999988654321 2457777766433 347777764310
Q ss_pred HHHHHHHHHHhchHHHHHhcCCCcccccCC----CCCCC--ChHHHHHHHHHH------HhcCCCCEEEeeccCCCCCHH
Q 014366 294 MERVEHTARTANADEFVRTLPQGYNTHIGP----RGSSL--SGGQRQRLAIAR------ALYQNSSVLILDEATSALDSR 361 (426)
Q Consensus 294 ~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~----~g~~L--SgGqkQRl~iAR------al~~~p~illlDEpts~LD~~ 361 (426)
..... .+.. . =++...+. ....+ |+|++|++.++. +++.+|+...+|+ ++|+.
T Consensus 67 ----~~~~~-~~~~-~------ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~ 131 (189)
T 2bdt_A 67 ----VNFLL-AQND-V------VLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGER 131 (189)
T ss_dssp ----HHHHH-TTCE-E------EEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGG
T ss_pred ----HHHHh-cCCc-E------EEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHH
Confidence 00000 0000 0 00000000 00124 888888888888 8888888888884 89998
Q ss_pred HHHHHHHHHHHHcC-CceEEEeccC-hHHHH-hcCEEEEEeCCEEEEeccccccccC
Q 014366 362 SELLVRQAVDRLLG-HHTVLVIAHH-LETVM-MAKRVFLLDNGKLEELNRSTLLGSN 415 (426)
Q Consensus 362 ~~~~i~~~l~~~~~-~~tvi~itH~-~~~~~-~~D~i~vl~~G~i~e~g~~~~l~~~ 415 (426)
..+. .+.+..+.. +.++|.+||. ++.+. .||+|+ ++|+++..|+++-+..+
T Consensus 132 ~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~~~ 185 (189)
T 2bdt_A 132 CLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLEHH 185 (189)
T ss_dssp GGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC---------
T ss_pred HHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchhhc
Confidence 8777 777777643 5799999999 88885 799998 99999999988766543
No 129
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.61 E-value=1.1e-18 Score=160.31 Aligned_cols=116 Identities=20% Similarity=0.209 Sum_probs=84.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCC--C
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDL--M 289 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~--~ 289 (426)
.++|++++|+||||||||||+++|+|+++|+ | ..+++|+++...++.+..+|+..... .
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999876 4 24678888877777666666532110 0
Q ss_pred -CCCCHHHHHHHHHHhchHHHHHhcCCC--cccccCCCCCCCChHHHHHHHHH-HHhcCCCCEEEeeccC
Q 014366 290 -TKIDMERVEHTARTANADEFVRTLPQG--YNTHIGPRGSSLSGGQRQRLAIA-RALYQNSSVLILDEAT 355 (426)
Q Consensus 290 -~~~~~~~~~~~~~~~~l~~~~~~lp~g--~~t~~~~~g~~LSgGqkQRl~iA-Ral~~~p~illlDEpt 355 (426)
...+.+.+ .+++..++.| +++.+.+++..+|+||+||+++| |+++.++.++++|||.
T Consensus 80 ~~~~~~~~~---------~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 80 PETFDFEGF---------QRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp GGGBCHHHH---------HHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CchhhHHHH---------HHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 01122222 2233333333 66777888899999999999998 9999999998899984
No 130
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.59 E-value=2.1e-17 Score=155.68 Aligned_cols=150 Identities=14% Similarity=0.113 Sum_probs=97.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---cCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc-cHHHHHcCCC--
Q 014366 214 AGETVALIGPSGGGKSTLAKLLL---RLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIGYRD-- 287 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~---g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eni~~~~-- 287 (426)
++++++|+|||||||||++++|+ |+..|+.|+|.++|.+.. ..+...+.+++|++.+++. ++.+|+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988876532 1234456677888776654 8888885310
Q ss_pred ----C--C--CCCCHHHHHHHHHHhchH--HHHHhcCC-CcccccCCCCCCCChHHHHHHHHHHHh-cCCCCEEEee---
Q 014366 288 ----L--M--TKIDMERVEHTARTANAD--EFVRTLPQ-GYNTHIGPRGSSLSGGQRQRLAIARAL-YQNSSVLILD--- 352 (426)
Q Consensus 288 ----~--~--~~~~~~~~~~~~~~~~l~--~~~~~lp~-g~~t~~~~~g~~LSgGqkQRl~iARal-~~~p~illlD--- 352 (426)
. . ...+.++.....+..... -+++.-|+ .++-...++...||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 0 0 011222222111101100 00000000 011112334568998 66 888 9999999999
Q ss_pred -ccCCCCCHHHHHHHHHHHHHHc
Q 014366 353 -EATSALDSRSELLVRQAVDRLL 374 (426)
Q Consensus 353 -Epts~LD~~~~~~i~~~l~~~~ 374 (426)
|||++||..+++.+.+.++++.
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999988764
No 131
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.57 E-value=9.7e-16 Score=156.70 Aligned_cols=154 Identities=18% Similarity=0.231 Sum_probs=102.3
Q ss_pred ceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC----HHH--HhcceEEEecCCCCCc-c
Q 014366 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR----LDS--LRRHVGLVSQDITLFS-G 277 (426)
Q Consensus 205 l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~----~~~--~r~~i~~v~Q~~~lf~-~ 277 (426)
-+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.|..... ... .|+.++|++|++.+++ .
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 46889999999999999999999999999999999999999999887764321 122 3667999999988764 5
Q ss_pred cHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCC--CCCCChHHHHHHHHHHHhcC-CC-CEEEeec
Q 014366 278 TVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPR--GSSLSGGQRQRLAIARALYQ-NS-SVLILDE 353 (426)
Q Consensus 278 ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~--g~~LSgGqkQRl~iARal~~-~p-~illlDE 353 (426)
|+++|+.++.. .+.+ .+ + +||. |.. -.++-.--+|++.++|++.. .| ++++..+
T Consensus 363 tV~e~l~~a~~-~~~D---------------vV--L---IDTa-Grl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 363 VIFDAIQAAKA-RNID---------------VL--I---ADTA-GRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHHHH-TTCS---------------EE--E---ECCC-CSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHHHh-cCCC---------------EE--E---EeCC-CccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 99999965421 0100 00 0 0110 000 00111123578899998754 46 3565556
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCceEEEecc
Q 014366 354 ATSALDSRSELLVRQAVDRLLGHHTVLVIAH 384 (426)
Q Consensus 354 pts~LD~~~~~~i~~~l~~~~~~~tvi~itH 384 (426)
||++.|.... .+.+.+. -+.|.+++||
T Consensus 421 attGq~al~~---ak~f~~~-~~itgvIlTK 447 (503)
T 2yhs_A 421 ASTGQNAVSQ---AKLFHEA-VGLTGITLTK 447 (503)
T ss_dssp GGGTHHHHHH---HHHHHHH-TCCSEEEEEC
T ss_pred CcccHHHHHH---HHHHHhh-cCCCEEEEEc
Confidence 8888665432 2223321 2578999999
No 132
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.54 E-value=8.3e-15 Score=146.44 Aligned_cols=75 Identities=29% Similarity=0.388 Sum_probs=68.1
Q ss_pred CCCCChHHHHHH------HHHHHhcCC-CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEE
Q 014366 325 GSSLSGGQRQRL------AIARALYQN-SSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFL 397 (426)
Q Consensus 325 g~~LSgGqkQRl------~iARal~~~-p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~v 397 (426)
...|||||+||+ ++||++..+ |+++||||||++||+.+...+.+.|.++.++.+||++||+++....||++++
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~ 357 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIIN 357 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEE
Confidence 468999999988 668999999 9999999999999999999999999987655799999999986568999999
Q ss_pred Ee
Q 014366 398 LD 399 (426)
Q Consensus 398 l~ 399 (426)
|+
T Consensus 358 l~ 359 (371)
T 3auy_A 358 VK 359 (371)
T ss_dssp EE
T ss_pred EE
Confidence 97
No 133
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.54 E-value=1.4e-16 Score=140.30 Aligned_cols=87 Identities=18% Similarity=0.212 Sum_probs=71.9
Q ss_pred EeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEec
Q 014366 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQ 270 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q 270 (426)
++++++|++ ..+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++... ...+ .+++|
T Consensus 11 ~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q 82 (158)
T 1htw_A 11 EFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIY 82 (158)
T ss_dssp HHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEE
T ss_pred HHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cccee
Confidence 456677754 35899999999999999999999999999999999999 9999999999877421 1112 27999
Q ss_pred CCCCCcccHHHHHcC
Q 014366 271 DITLFSGTVAENIGY 285 (426)
Q Consensus 271 ~~~lf~~ti~eni~~ 285 (426)
++.+|..|+.||+.+
T Consensus 83 ~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 83 HFDLYRLADPEELEF 97 (158)
T ss_dssp EEECTTCSCTTHHHH
T ss_pred ccccccCCcHHHHHH
Confidence 998887799999853
No 134
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.53 E-value=6.3e-18 Score=171.16 Aligned_cols=130 Identities=20% Similarity=0.197 Sum_probs=91.3
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC----CHHHHhcceEEEe---------c
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI----RLDSLRRHVGLVS---------Q 270 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~----~~~~~r~~i~~v~---------Q 270 (426)
+|+++ + .++|++++|+||||||||||+++|+|+++|++|+|.+.|.++... +..++++.+++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 378999999999999999999999999999999999998876321 1122344566655 9
Q ss_pred CCCCC--c-----ccHHHHHcCCCC-------CCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH
Q 014366 271 DITLF--S-----GTVAENIGYRDL-------MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL 336 (426)
Q Consensus 271 ~~~lf--~-----~ti~eni~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl 336 (426)
+|.++ . .|+.+|+.++.. .+..+.......+...++.++. ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 98763 2 389999865311 0111222333344555554432 235899999999
Q ss_pred HHHHHhcCCCCEEE
Q 014366 337 AIARALYQNSSVLI 350 (426)
Q Consensus 337 ~iARal~~~p~ill 350 (426)
|||+++.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999875
No 135
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.52 E-value=2.1e-15 Score=148.09 Aligned_cols=163 Identities=12% Similarity=0.094 Sum_probs=107.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHH----HHhc--ceEEEecCCCCCcc-cHHHHHc
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLD----SLRR--HVGLVSQDITLFSG-TVAENIG 284 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~----~~r~--~i~~v~Q~~~lf~~-ti~eni~ 284 (426)
.++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+...... .+++ .+.+++|+..+++. +++||+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 468999999999999999999999999999999999999998765533 2333 35699999988865 9999985
Q ss_pred CCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHH
Q 014366 285 YRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSEL 364 (426)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~ 364 (426)
++.. +... .+ -+||. |.. ..-..=.++.-.++|++..++++++||.+|. .|
T Consensus 206 ~~~~-------------~~~d---~v-----liDta-G~~-~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~----- 256 (328)
T 3e70_C 206 HAKA-------------RGID---VV-----LIDTA-GRS-ETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NA----- 256 (328)
T ss_dssp HHHH-------------HTCS---EE-----EEEEC-CSC-CTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-TH-----
T ss_pred HHHh-------------ccch---hh-----HHhhc-cch-hHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HH-----
Confidence 4310 0000 00 01110 100 0011123344458999998888999996554 33
Q ss_pred HHHHHHHHHc--CCceEEEeccChHH---------HH-hcCEEEEEeCCEEE
Q 014366 365 LVRQAVDRLL--GHHTVLVIAHHLET---------VM-MAKRVFLLDNGKLE 404 (426)
Q Consensus 365 ~i~~~l~~~~--~~~tvi~itH~~~~---------~~-~~D~i~vl~~G~i~ 404 (426)
+.+.++.+. .+.|+|++||--.+ +. ..-.|..+..|+-+
T Consensus 257 -~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 257 -IVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp -HHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred -HHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 333333332 36799999995422 11 24578888888654
No 136
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=1.1e-14 Score=143.80 Aligned_cols=137 Identities=18% Similarity=0.262 Sum_probs=78.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc-CCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCC-cccHHHHHcCCCCCCCCCH
Q 014366 217 TVALIGPSGGGKSTLAKLLLR-LYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF-SGTVAENIGYRDLMTKIDM 294 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g-~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ti~eni~~~~~~~~~~~ 294 (426)
.+.|.||||+||||+++++++ ++.|+.|.+.++|.+..... ..+..+++++|.+.+. +.+- .+ ..+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~ 106 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPSD-----MG----NNDR 106 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-------------CCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHhh-----cC----Ccch
Confidence 499999999999999999999 89999999999998765432 2256799999987642 1110 00 0111
Q ss_pred HHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 014366 295 ERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLL 374 (426)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 374 (426)
..+.+.++. +.... +++..+ .||| +..+|+++|+|||++ ||+.+...+.+.+.+..
T Consensus 107 ~~~~~~i~~-----~~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 107 IVIQELLKE-----VAQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp HHHHHHHHH-----HTTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred HHHHHHHHH-----HHHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 122222221 11111 111111 4566 778999999999999 99999999999999876
Q ss_pred CCceEEEeccChHH
Q 014366 375 GHHTVLVIAHHLET 388 (426)
Q Consensus 375 ~~~tvi~itH~~~~ 388 (426)
++.++|++||+++.
T Consensus 163 ~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 163 KNIRLIMVCDSMSP 176 (354)
T ss_dssp TTEEEEEEESCSCS
T ss_pred CCCEEEEEeCCHHH
Confidence 67899999999754
No 137
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.50 E-value=2e-14 Score=144.74 Aligned_cols=147 Identities=18% Similarity=0.269 Sum_probs=94.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHH--HhcCCCCCcc-----EEEEcCEeCCC-CCHHHHhcceEEEecCCCCCcccHHHH
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKL--LLRLYDPLSG-----CILVDDHDVQN-IRLDSLRRHVGLVSQDITLFSGTVAEN 282 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~l--l~g~~~p~~G-----~I~~~g~~i~~-~~~~~~r~~i~~v~Q~~~lf~~ti~en 282 (426)
-|++|++++|+||||||||||++. +.+..+|+.| .+++++.+... .....+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 589999999999999999999994 4577776444 88898875311 112223445665444 67788
Q ss_pred HcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh--cCCCCEEEeeccCCCCCH
Q 014366 283 IGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL--YQNSSVLILDEATSALDS 360 (426)
Q Consensus 283 i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal--~~~p~illlDEpts~LD~ 360 (426)
+.+.... +.+.....+ .-++.+ -.+|+++++||||+.+|+
T Consensus 247 i~~~~~~---~~~~~~~~l-----------------------------------~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 247 VAYARAY---NADHQLRLL-----------------------------------DAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp EEEEECC---SHHHHHHHH-----------------------------------HHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred EEEeccC---ChHHHHHHH-----------------------------------HHHHHHHHhcCCceEEecchhhhCch
Confidence 7664321 222111111 111111 247999999999999997
Q ss_pred HHH------------HHHHHHHHHHcC--CceEEEeccCh-------------------HHHH-hcCEEEEEeCCE
Q 014366 361 RSE------------LLVRQAVDRLLG--HHTVLVIAHHL-------------------ETVM-MAKRVFLLDNGK 402 (426)
Q Consensus 361 ~~~------------~~i~~~l~~~~~--~~tvi~itH~~-------------------~~~~-~~D~i~vl~~G~ 402 (426)
+.. ..+.+.|+++.+ +.|||+++|.. ..+. .+|.+++|++++
T Consensus 289 ~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 289 DFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 533 456666766642 68999999982 1233 589999998763
No 138
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.50 E-value=1.6e-14 Score=142.86 Aligned_cols=121 Identities=20% Similarity=0.155 Sum_probs=82.0
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-CCccEEEEc-CEeCCCCCHHHHhcceEEEecCCCCCcc-cHH
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-PLSGCILVD-DHDVQNIRLDSLRRHVGLVSQDITLFSG-TVA 280 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-p~~G~I~~~-g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 280 (426)
-++++++. .+|++++|+||||||||||+++|+|+.+ |+.|+|.++ |.+.. ...+..+++++|++.+++. +++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 56777764 4899999999999999999999999999 999999987 75532 2345679999999988865 899
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 281 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
++-.. ..+.+++.+ ...++++.+ |+....+....+|| ||+||++||+++
T Consensus 280 e~~l~-----~l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFGLW-----HLEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCCCC-----CCCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hhhhc-----CCCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 86321 223333322 122333332 55556667778999 999999999875
No 139
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.50 E-value=6.1e-17 Score=168.00 Aligned_cols=176 Identities=13% Similarity=0.100 Sum_probs=114.8
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc-ccHHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVAE 281 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~e 281 (426)
.+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--..+. ...++++.|...... .|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence 46889999999999999999999999999999999999999999999865222211 345777777655222 26777
Q ss_pred HHcCCCCC-------CCCCHHHHHHHHHHh--c-----------hHHHHHhc---CCCcccccC-------CCCCCCChH
Q 014366 282 NIGYRDLM-------TKIDMERVEHTARTA--N-----------ADEFVRTL---PQGYNTHIG-------PRGSSLSGG 331 (426)
Q Consensus 282 ni~~~~~~-------~~~~~~~~~~~~~~~--~-----------l~~~~~~l---p~g~~t~~~-------~~g~~LSgG 331 (426)
++....+. .+....+...+++.+ + ..+.+.++ |.|+...+. .....+|+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 66432110 011112233333322 1 22333332 223322211 123467999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CceEEE--eccChHHHH-hcC
Q 014366 332 QRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLG-HHTVLV--IAHHLETVM-MAK 393 (426)
Q Consensus 332 qkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~--itH~~~~~~-~~D 393 (426)
|+||.++|. + | |+|||+.+...+.+.+.++.+ ++|+++ +||+++.+. .|+
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 999987752 1 7 999999888777777766643 678875 899999885 564
No 140
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.47 E-value=7.4e-17 Score=154.79 Aligned_cols=144 Identities=19% Similarity=0.182 Sum_probs=105.0
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCC-CCCc-ccHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDI-TLFS-GTVA 280 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~-~ti~ 280 (426)
.+++++++++++| ++|+||||||||||+++|+|.+.+ |.|.++|.++......+.++.+++++|++ ..++ .++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4789999999999 999999999999999999999877 79999998886655555667799999986 3444 4788
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCC----
Q 014366 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS---- 356 (426)
Q Consensus 281 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts---- 356 (426)
||+........ ..... ...+..+.++ ..|||||+||+.+++|+..+|++| |||+.
T Consensus 110 Deid~~~~~r~--~~~~~------~~~~~~~~~l-----------~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gR 168 (274)
T 2x8a_A 110 DEVDALCPRRS--DRETG------ASVRVVNQLL-----------TEMDGLEARQQVFIMAATNRPDII--DPAILRPGR 168 (274)
T ss_dssp ETCTTTCC-----------------CTTHHHHHH-----------HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTS
T ss_pred ehhhhhhcccC--CCcch------HHHHHHHHHH-----------HhhhcccccCCEEEEeecCChhhC--CHhhcCccc
Confidence 88865332111 11100 0111222222 478999999999999999999975 99974
Q ss_pred --------CCCHHHHHHHHHHHH
Q 014366 357 --------ALDSRSELLVRQAVD 371 (426)
Q Consensus 357 --------~LD~~~~~~i~~~l~ 371 (426)
--|.+.+..|++.+.
T Consensus 169 fd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 169 LDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp SCEEEECCSCCHHHHHHHHHHHT
T ss_pred CCeEEEeCCcCHHHHHHHHHHHH
Confidence 346777777776654
No 141
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.46 E-value=7.9e-15 Score=142.57 Aligned_cols=116 Identities=13% Similarity=0.043 Sum_probs=82.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE---cCEeCCCCCHHHHh-cceEEEecCCCCC------cccHH
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV---DDHDVQNIRLDSLR-RHVGLVSQDITLF------SGTVA 280 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~---~g~~i~~~~~~~~r-~~i~~v~Q~~~lf------~~ti~ 280 (426)
++.+|++++|+||||||||||+++|+ +.+|++|+|.+ +|.++..... ..+ +.+||++|+|.+. ..|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45679999999999999999999999 99999999999 9988765432 222 3699999999652 3488
Q ss_pred HHH--cCCC-----------CCCCCCHHHHHHHHHHhchHH-HHHhcCCCcccccCCCCCCCChHHHHHHHHHH
Q 014366 281 ENI--GYRD-----------LMTKIDMERVEHTARTANADE-FVRTLPQGYNTHIGPRGSSLSGGQRQRLAIAR 340 (426)
Q Consensus 281 eni--~~~~-----------~~~~~~~~~~~~~~~~~~l~~-~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iAR 340 (426)
||+ .|+. .........+.++++..++.+ ..++.| ..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 888 4431 011223356788888888865 555544 579998899999987
No 142
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.46 E-value=5.6e-14 Score=122.35 Aligned_cols=91 Identities=19% Similarity=0.248 Sum_probs=69.5
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc--EEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG--CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAE 281 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G--~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 281 (426)
+++++ +|+.++|+||||||||||++++++.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 46666 8999999999999999999999999876 46 455444322110
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHH
Q 014366 282 NIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361 (426)
Q Consensus 282 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~ 361 (426)
+++.+|++|++|||++ +|..
T Consensus 79 -----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~ 98 (149)
T 2kjq_A 79 -----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNE 98 (149)
T ss_dssp -----------------------------------------------------------GGGGGCSEEEEESTTC-CCSH
T ss_pred -----------------------------------------------------------HHHhCCCEEEEeCccc-cChH
Confidence 2356899999999998 6666
Q ss_pred HHHHHHHHHHHHcC-Cce-EEEeccC
Q 014366 362 SELLVRQAVDRLLG-HHT-VLVIAHH 385 (426)
Q Consensus 362 ~~~~i~~~l~~~~~-~~t-vi~itH~ 385 (426)
.++.+.+.+.++.+ +++ +|++||.
T Consensus 99 ~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 99 EQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 68888888887653 577 7888885
No 143
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.46 E-value=5.6e-14 Score=125.60 Aligned_cols=110 Identities=21% Similarity=0.231 Sum_probs=74.9
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCC
Q 014366 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDL 288 (426)
Q Consensus 209 sl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~ 288 (426)
+|++++|+.++|+||||||||||++++++.+.|++|... .| .+..+.+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~------------------~~---------~~~~~~~----- 79 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG------------------YF---------FDTKDLI----- 79 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC------------------CE---------EEHHHHH-----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE------------------EE---------EEHHHHH-----
Confidence 567789999999999999999999999999877666210 11 1111111
Q ss_pred CCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCC-CCCHHHHHHHH
Q 014366 289 MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATS-ALDSRSELLVR 367 (426)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts-~LD~~~~~~i~ 367 (426)
+.+... ... + ... -....+.+|++|+||||++ ++|+.....+.
T Consensus 80 ------~~~~~~---------~~~---~----------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~ 123 (180)
T 3ec2_A 80 ------FRLKHL---------MDE---G----------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELIS 123 (180)
T ss_dssp ------HHHHHH---------HHH---T----------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHH
T ss_pred ------HHHHHH---------hcC---c----------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHH
Confidence 000000 100 0 000 0112244999999999995 89999999999
Q ss_pred HHHHHHc-CCceEEEeccCh
Q 014366 368 QAVDRLL-GHHTVLVIAHHL 386 (426)
Q Consensus 368 ~~l~~~~-~~~tvi~itH~~ 386 (426)
+.+.+.. +++++|++||..
T Consensus 124 ~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 124 YIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHHHHHHHTTCEEEEECCCC
T ss_pred HHHHHHHHcCCCEEEEcCCC
Confidence 9998764 578999999986
No 144
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.38 E-value=1.9e-15 Score=147.41 Aligned_cols=91 Identities=20% Similarity=0.232 Sum_probs=75.5
Q ss_pred ccEEEEeEEEEeCCCCCCcceeeeEEE-------------------eCCCEEEEECCCCCcHHHHHHHHhcCCC--CCcc
Q 014366 186 GDVKFCNISFKYADNMPLVLDQLNLHI-------------------RAGETVALIGPSGGGKSTLAKLLLRLYD--PLSG 244 (426)
Q Consensus 186 ~~i~~~~v~~~y~~~~~~~l~~isl~i-------------------~~Ge~~~ivG~sGsGKSTLl~ll~g~~~--p~~G 244 (426)
+.|+++||++.|. ++++++|+++ ++|+++||+||||||||||+++|+|+++ |++|
T Consensus 36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 4688999999993 5899999988 8999999999999999999999999998 9999
Q ss_pred EEEE---cCEeCCCCCHHHHhcceEEEecCCCCCc-ccHHHHHcC
Q 014366 245 CILV---DDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVAENIGY 285 (426)
Q Consensus 245 ~I~~---~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eni~~ 285 (426)
+|.+ ||.... . ..++.++++ |+..++. .|+.+|+.+
T Consensus 112 ~i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 112 RVELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp CEEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHHH
T ss_pred eEEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHHH
Confidence 9999 887642 2 345668888 7766553 478887643
No 145
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.37 E-value=4.8e-14 Score=142.50 Aligned_cols=155 Identities=19% Similarity=0.167 Sum_probs=94.0
Q ss_pred ceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHc
Q 014366 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIG 284 (426)
Q Consensus 205 l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~ 284 (426)
-++++|+++.|+.++|+|+||||||||+++|+|..+ .+.+.+... +...+++++++.. ...++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-----l~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-----LSPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-----SCCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-----ecceeeEEEecCc-ceEEEEeccc
Confidence 479999999999999999999999999999999853 344444332 2345777777641 1123333322
Q ss_pred CCCC---CCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHH
Q 014366 285 YRDL---MTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSR 361 (426)
Q Consensus 285 ~~~~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~ 361 (426)
+... ......... +..+.+. ..+.. +|-. .+...+||+||+||+++|++|+.+|.++++ +.+|..
T Consensus 215 li~~a~~~~~L~~~fl-~~~era~--~lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFL-RHIARTR--VLLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHH-HHHTSSS--EEEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHH-HHHHHHH--hhhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 2110 001111111 1111111 01110 0100 233457999999999999999999999999 999987
Q ss_pred HHHHHHHHHHH-Hc-CCceEEEecc
Q 014366 362 SELLVRQAVDR-LL-GHHTVLVIAH 384 (426)
Q Consensus 362 ~~~~i~~~l~~-~~-~~~tvi~itH 384 (426)
.. ...+.+.+ +. .+.+++++|.
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 66 33344433 33 2557776654
No 146
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.37 E-value=1.1e-13 Score=134.28 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=70.3
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE---cCEeCCCCCHHHHhcceEEEecCCC-------------
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV---DDHDVQNIRLDSLRRHVGLVSQDIT------------- 273 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~---~g~~i~~~~~~~~r~~i~~v~Q~~~------------- 273 (426)
|++.+|++++|+||||||||||+++|+|+.+|++|+|.+ +|.++.........+.+++|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456689999999999999999999999999999999999 8988865442111236899999985
Q ss_pred ---CCcc-cHHHHHcCCCCC-CCCCHHHHHHHHHHhch-HHHHHhcC
Q 014366 274 ---LFSG-TVAENIGYRDLM-TKIDMERVEHTARTANA-DEFVRTLP 314 (426)
Q Consensus 274 ---lf~~-ti~eni~~~~~~-~~~~~~~~~~~~~~~~l-~~~~~~lp 314 (426)
+|+. |+ ||+.++... ......++.++++..++ .+..++.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 4544 88 999885321 12234568889999999 57777666
No 147
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.26 E-value=4.4e-14 Score=131.54 Aligned_cols=181 Identities=13% Similarity=0.084 Sum_probs=76.6
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHh-cCCCCCccEEEEcCEeCCCCCHHH-HhcceEEEecCCCCCcc-cH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLL-RLYDPLSGCILVDDHDVQNIRLDS-LRRHVGLVSQDITLFSG-TV 279 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~-g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i~~v~Q~~~lf~~-ti 279 (426)
...+++||++++|++++|+||||||||||+++|+ |++++ ..++.++....+.. .+..+.|.++++..|.. +.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~-----~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN-----IVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C-----EEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC-----cccccccCCCCCCccccCCCeEEEecHHHhhhhhh
Confidence 3678999999999999999999999999999999 99854 12333222111100 11234567776655533 44
Q ss_pred HHHHcC----CCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCCh--HHHHHH-HHH-HHhcCCCCEEEe
Q 014366 280 AENIGY----RDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSG--GQRQRL-AIA-RALYQNSSVLIL 351 (426)
Q Consensus 280 ~eni~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSg--GqkQRl-~iA-Ral~~~p~illl 351 (426)
.+|+.. .........+.+.+.++.. ....+.- .+.| .-+++. .-+ ..++..|+..++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~vild~---~~~g~~~~~~~~~~~~~~v~v~~~~~~~l 154 (231)
T 3lnc_A 90 NGEIIEHAEVFGNFYGVPRKNLEDNVDKG------------VSTLLVI---DWQGAFKFMEMMREHVVSIFIMPPSMEEL 154 (231)
T ss_dssp TTCEEEEEEETTEEEEEECTTHHHHHHHT------------CEEEEEC---CHHHHHHHHHHSGGGEEEEEEECSCHHHH
T ss_pred cCceehhhhhccccCCCCHHHHHHHHHcC------------CeEEEEc---CHHHHHHHHHhcCCCeEEEEEECCcHHHH
Confidence 444431 1100011112233333221 1111100 0111 113333 112 234667788889
Q ss_pred eccCCCCCHHHHHHHHHHHHHHc------CCceEEEeccChHHH-HhcCEEEEEeCCEE
Q 014366 352 DEATSALDSRSELLVRQAVDRLL------GHHTVLVIAHHLETV-MMAKRVFLLDNGKL 403 (426)
Q Consensus 352 DEpts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~~~~~-~~~D~i~vl~~G~i 403 (426)
||++++.|..+++.+.+.+.+.. +....++++|+++.+ +.+++++...+++.
T Consensus 155 ~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~ 213 (231)
T 3lnc_A 155 RRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKT 213 (231)
T ss_dssp HHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBG
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhcc
Confidence 99999999888887777665431 134778888888765 35666654444543
No 148
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.25 E-value=2.5e-12 Score=131.84 Aligned_cols=64 Identities=16% Similarity=0.081 Sum_probs=55.1
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~ 257 (426)
++.+++... ..+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 8 ~l~~l~~~~----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 8 KFRSLTLIN----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEEEE----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ceeEEEEec----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 345555432 2489999999999 999999999999999999999999999999999999886543
No 149
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.23 E-value=2.2e-12 Score=125.40 Aligned_cols=98 Identities=22% Similarity=0.305 Sum_probs=71.9
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCC
Q 014366 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRD 287 (426)
Q Consensus 208 isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~ 287 (426)
++++.++|++++++|||||||||+++.|++.+.+..|+|.+.+.|.... ...++
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHHHH-----
Confidence 3445678999999999999999999999999999989999877664210 01111
Q ss_pred CCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH---HHHHHhcCCCCEEEeeccCC
Q 014366 288 LMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL---AIARALYQNSSVLILDEATS 356 (426)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl---~iARal~~~p~illlDEpts 356 (426)
+...++.. |++. ....|||+.|++ ++++|+..+|+++|+|||..
T Consensus 151 ---------L~~~~~~~-----------gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 151 ---------LKIWGERV-----------GATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ---------HHHHHHHH-----------TCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ---------HHHHHHHc-----------CCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 11122221 2221 125689999999 99999999999999999974
No 150
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.23 E-value=1.7e-11 Score=118.61 Aligned_cols=138 Identities=13% Similarity=0.148 Sum_probs=89.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI 292 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~ 292 (426)
++|++++++|||||||||+++.|++.+.+++| +++.++.+|+ +..+..|++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~--~r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDT--YRIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCC--SSTTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCc--ccchHHHHHHH-------
Confidence 47899999999999999999999999988778 2466777766 23333333321
Q ss_pred CHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHH
Q 014366 293 DMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDR 372 (426)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~ 372 (426)
..+.. |++.... ..+..-+.+++++ .+|+++|+| |+|+|+.....+.+..+-
T Consensus 156 -------~~~~~-----------gl~~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~ 207 (296)
T 2px0_A 156 -------YAELL-----------QAPLEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKET 207 (296)
T ss_dssp -------HHTTT-----------TCCCCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred -------HHHhc-----------CCCeEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence 11111 1111111 1234456777764 899999999 999998776655554433
Q ss_pred Hc---CCceEEEe--ccChHHHH-hcCEEEEEeCCEEEE
Q 014366 373 LL---GHHTVLVI--AHHLETVM-MAKRVFLLDNGKLEE 405 (426)
Q Consensus 373 ~~---~~~tvi~i--tH~~~~~~-~~D~i~vl~~G~i~e 405 (426)
+. ...+++++ +|..+.+. .+|++..++.+.++-
T Consensus 208 l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 208 IPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp SCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred HhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 32 22344444 99987775 577766666676664
No 151
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.23 E-value=1.9e-11 Score=118.30 Aligned_cols=142 Identities=18% Similarity=0.130 Sum_probs=97.3
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
+.++++++.|++. . ++++|+ +|++++++|+||+||||++..|++++.+..|+|.+.+.|.... .. .
T Consensus 77 ~~~~~l~~~~~~~--~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~--~~-~----- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP--AA-R----- 142 (295)
T ss_dssp HHHHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH--HH-H-----
T ss_pred HHHHHHHHHHCCC--C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH--hH-H-----
Confidence 3445666667532 1 677887 8999999999999999999999999999999999988765421 10 0
Q ss_pred EecCCCCCcccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCC
Q 014366 268 VSQDITLFSGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSS 347 (426)
Q Consensus 268 v~Q~~~lf~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~ 347 (426)
+.+ ....+.. |++-... +..-+..+-+|.+++++...+++
T Consensus 143 -------------~ql--------------~~~~~~~-----------~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D 182 (295)
T 1ls1_A 143 -------------EQL--------------RLLGEKV-----------GVPVLEV--MDGESPESIRRRVEEKARLEARD 182 (295)
T ss_dssp -------------HHH--------------HHHHHHH-----------TCCEEEC--CTTCCHHHHHHHHHHHHHHHTCC
T ss_pred -------------HHH--------------HHhcccC-----------CeEEEEc--CCCCCHHHHHHHHHHHHHhCCCC
Confidence 000 0001111 1111110 01123445678999999889999
Q ss_pred EEEeecc-CCCCCHHHHHHHHHHHHHHcCCceEEEec
Q 014366 348 VLILDEA-TSALDSRSELLVRQAVDRLLGHHTVLVIA 383 (426)
Q Consensus 348 illlDEp-ts~LD~~~~~~i~~~l~~~~~~~tvi~it 383 (426)
++|+||| ++++|......+.+..+......+++++.
T Consensus 183 ~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 183 LILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 9999999 99999988888888777665555655553
No 152
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.21 E-value=7e-13 Score=128.70 Aligned_cols=111 Identities=19% Similarity=0.178 Sum_probs=64.2
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE---cCEeCCCCCHHHHhc-ceEEEecCCCCCc-----ccHH
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV---DDHDVQNIRLDSLRR-HVGLVSQDITLFS-----GTVA 280 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~---~g~~i~~~~~~~~r~-~i~~v~Q~~~lf~-----~ti~ 280 (426)
+++.+|++++|+||||||||||+++|+|+.+|..|+|.+ +|+..+... ++.+ .++|++|.|.+.. .|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~--~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV--ELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC--CEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH--HHhhcCCEEEecCCCccccccccCCH-
Confidence 456789999999999999999999999999999999999 887765432 2222 2899999997653 478
Q ss_pred HHHc--CCC-------------CCCCCCHHHHHHHHHHhchHHHH-HhcCCCcccccCCCCCCCChHHHHH
Q 014366 281 ENIG--YRD-------------LMTKIDMERVEHTARTANADEFV-RTLPQGYNTHIGPRGSSLSGGQRQR 335 (426)
Q Consensus 281 eni~--~~~-------------~~~~~~~~~~~~~~~~~~l~~~~-~~lp~g~~t~~~~~g~~LSgGqkQR 335 (426)
||+. |.. .........+.++++..++.+.. +.. ..|+.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y------------~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY------------VEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH------------HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH------------HHHHHHHhhc
Confidence 8883 320 01112234577888888876532 332 2566777763
No 153
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.20 E-value=2.3e-14 Score=143.62 Aligned_cols=168 Identities=13% Similarity=0.100 Sum_probs=109.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCccEEEEcCEeCCCCCH-HHHhcce---EEEecCCCC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLR------------LYDPLSGCILVDDHDVQNIRL-DSLRRHV---GLVSQDITL 274 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g------------~~~p~~G~I~~~g~~i~~~~~-~~~r~~i---~~v~Q~~~l 274 (426)
++++|.+++|+|+||||||||+++|+| ..+|+.|.+.++|..+..+.. ..-++.+ .++.+.|.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 467899999999999999999999999 667999999998754321100 0001222 366677766
Q ss_pred Ccc-cHHHHHcCCCCCCCCCHHHHHHHHHHhch-HHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCC--CEEE
Q 014366 275 FSG-TVAENIGYRDLMTKIDMERVEHTARTANA-DEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNS--SVLI 350 (426)
Q Consensus 275 f~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p--~ill 350 (426)
..+ |..|++ .. .....++.+.. ...+ +..-+.....+||+. +| ++.+
T Consensus 96 ~~~~s~~e~L---------~~-~fl~~ir~~d~il~Vv-------d~~~d~~i~~v~~~~------------dP~~di~i 146 (392)
T 1ni3_A 96 TKGASTGVGL---------GN-AFLSHVRAVDAIYQVV-------RAFDDAEIIHVEGDV------------DPIRDLSI 146 (392)
T ss_dssp CCCCCSSSSS---------CH-HHHHHHTTCSEEEEEE-------ECCCTTCSSCCSSSS------------CHHHHHHH
T ss_pred ccCCcHHHHH---------HH-HHHHHHHHHHHHHHHH-------hccccceeeeecccc------------Ccchhhhh
Confidence 643 443332 00 11111111110 0000 000012334456652 89 9999
Q ss_pred eeccCCCCCHHHHHHHHHHHHHH-cC-CceEEEeccChHHHH-hcCEEE-EEeCC-EEEEeccc
Q 014366 351 LDEATSALDSRSELLVRQAVDRL-LG-HHTVLVIAHHLETVM-MAKRVF-LLDNG-KLEELNRS 409 (426)
Q Consensus 351 lDEpts~LD~~~~~~i~~~l~~~-~~-~~tvi~itH~~~~~~-~~D~i~-vl~~G-~i~e~g~~ 409 (426)
+|||++.+|++..++.++.+... .. +.|+ ++|.+..+. .||++. +|++| +++..|+.
T Consensus 147 ldeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 147 IVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 99999999999999999998887 54 4554 399998875 799999 99999 87765543
No 154
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.20 E-value=2.2e-12 Score=117.07 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=56.5
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc-cHHHHHc
Q 014366 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENIG 284 (426)
Q Consensus 209 sl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eni~ 284 (426)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++........+..++|+||++..|.. ++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57889999999999999999999999999974 588888777665544456779999999988854 7777764
No 155
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.20 E-value=1.5e-15 Score=149.66 Aligned_cols=172 Identities=22% Similarity=0.184 Sum_probs=104.3
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCC-------CEEEEECCCCCcHHHHHHHHhcCC----CCCccEEEEcCEeCCCC
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAG-------ETVALIGPSGGGKSTLAKLLLRLY----DPLSGCILVDDHDVQNI 256 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~G-------e~~~ivG~sGsGKSTLl~ll~g~~----~p~~G~I~~~g~~i~~~ 256 (426)
++.++++..|+. ..+++++++.+++| +.++|+||||+|||||+++|+|.+ .|++|.+..++.++...
T Consensus 19 lr~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 19 LRPKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp TSCSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred cCCccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 334455556654 35899999999877 899999999999999999999998 67778777666554321
Q ss_pred CHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCCC----HHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHH
Q 014366 257 RLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKID----MERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQ 332 (426)
Q Consensus 257 ~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGq 332 (426)
.....+..|.+++|...+++ ++.|++.........+ ..... +. +...+. +-++.. ...+...||+|+
T Consensus 97 ~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~---~~--i~~~l~--~~~li~-at~~~~~Ls~~l 167 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSA---KS--IRIDIQ--PFTLVG-ATTRSGLLSSPL 167 (334)
T ss_dssp HHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC--------------------C--CCEEEE-EESCGGGSCHHH
T ss_pred HHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCccc---cc--ccccCC--CeEEEE-ecCCcccCCHHH
Confidence 11111456999999887765 7888773210000000 00000 00 111111 012211 223456899999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHH
Q 014366 333 RQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETV 389 (426)
Q Consensus 333 kQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 389 (426)
|||++++ .+||+.+...+.+.|++..+.. -++|+.+.+
T Consensus 168 ~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~---~~~~~~~~~ 205 (334)
T 1in4_A 168 RSRFGII----------------LELDFYTVKELKEIIKRAASLM---DVEIEDAAA 205 (334)
T ss_dssp HTTCSEE----------------EECCCCCHHHHHHHHHHHHHHT---TCCBCHHHH
T ss_pred HHhcCce----------------eeCCCCCHHHHHHHHHHHHHHc---CCCcCHHHH
Confidence 9998655 7788888888888887653211 135666544
No 156
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.12 E-value=7.1e-14 Score=133.87 Aligned_cols=139 Identities=17% Similarity=0.190 Sum_probs=96.2
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEE
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v 268 (426)
+++++.+.|.. +.+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++........++.++++
T Consensus 51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 44566666653 35899999999999 99999999999999999999885 79999998776443333445568888
Q ss_pred ecCCC-CCc-ccHHHHHc-CCCCCCC---CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 269 SQDIT-LFS-GTVAENIG-YRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 269 ~Q~~~-lf~-~ti~eni~-~~~~~~~---~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+|+.. .++ .++.||+. ++..... ...++..+. +..++ ..|||||+||+.+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHH-----HHHHH---------------HHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEEEe
Confidence 88764 343 37778873 3221100 001111111 11222 25799999999999999
Q ss_pred cCCCCEEEeeccC
Q 014366 343 YQNSSVLILDEAT 355 (426)
Q Consensus 343 ~~~p~illlDEpt 355 (426)
..+|++ +|++.
T Consensus 185 t~~p~~--ld~~l 195 (278)
T 1iy2_A 185 TNRPDI--LDPAL 195 (278)
T ss_dssp ESCTTS--SCHHH
T ss_pred cCCchh--CCHhH
Confidence 999987 68764
No 157
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.11 E-value=7e-12 Score=112.93 Aligned_cols=142 Identities=24% Similarity=0.177 Sum_probs=77.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC-----------CccEEEEcCEeCCC--CCHHHHhcceEEEecCCCCCc--ccHHH
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDP-----------LSGCILVDDHDVQN--IRLDSLRRHVGLVSQDITLFS--GTVAE 281 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p-----------~~G~I~~~g~~i~~--~~~~~~r~~i~~v~Q~~~lf~--~ti~e 281 (426)
+++|+|+||||||||++.++|...| ++|+|.++|.++.- ++....++..++++|...-.. .++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7899999999999999999998765 57999999976531 111111122233332111000 12222
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcc-cccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCH
Q 014366 282 NIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYN-THIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDS 360 (426)
Q Consensus 282 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~-t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~ 360 (426)
+... .+.+.+....+. .....+.... -.++.+ ..|..-..+...+||+++.+|+++++| ||++|.
T Consensus 111 ~~~~------~s~~~~~~~~~~-----~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~ 176 (191)
T 1oix_A 111 IAKH------LTYENVERWLKE-----LRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDS 176 (191)
T ss_dssp TTCH------HHHHTHHHHHHH-----HHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTC
T ss_pred CcCH------HHHHHHHHHHHH-----HHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCC
Confidence 1100 001111111111 0000010100 011111 112222223478899999999999999 999999
Q ss_pred HHHHHHHHHHHH
Q 014366 361 RSELLVRQAVDR 372 (426)
Q Consensus 361 ~~~~~i~~~l~~ 372 (426)
.+..++.+.|.+
T Consensus 177 ~~v~~l~~~l~~ 188 (191)
T 1oix_A 177 TNVEAAFQTILT 188 (191)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999988865
No 158
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.10 E-value=1.7e-12 Score=120.70 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=52.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH--------
Q 014366 187 DVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL-------- 258 (426)
Q Consensus 187 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~-------- 258 (426)
.|+++|++..|+. ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 5788888655521 566677 8999999999999999999999999999999999998843321
Q ss_pred HHHhcceEEEecC
Q 014366 259 DSLRRHVGLVSQD 271 (426)
Q Consensus 259 ~~~r~~i~~v~Q~ 271 (426)
...+..++|++|+
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 2246789999985
No 159
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.10 E-value=9.4e-13 Score=121.62 Aligned_cols=129 Identities=24% Similarity=0.252 Sum_probs=91.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC---CCCccEEEE--------cCEeCCC-CCHHHHhcceEEEecCC------CCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY---DPLSGCILV--------DDHDVQN-IRLDSLRRHVGLVSQDI------TLF 275 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~---~p~~G~I~~--------~g~~i~~-~~~~~~r~~i~~v~Q~~------~lf 275 (426)
.+.+++|+|||||||||+.++|++.+ .++.|.+.. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999876 788999887 6776642 33456788899999976 234
Q ss_pred cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCccccc-CCCCCCCChHHHHHHHHHHHhcCCCCEEEeecc
Q 014366 276 SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHI-GPRGSSLSGGQRQRLAIARALYQNSSVLILDEA 354 (426)
Q Consensus 276 ~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~-~~~g~~LSgGqkQRl~iARal~~~p~illlDEp 354 (426)
..++.+++. .+++..++..+..++.+...+.+..+.+ ..++.-++|+ .++++++.+++++++.++
T Consensus 84 ~~~v~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~ 149 (227)
T 1cke_A 84 GEDVSGEIR---------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDA 149 (227)
T ss_dssp TEECHHHHT---------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEEC
T ss_pred CeeCchhhC---------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeC
Confidence 456777752 2456666666666666655444443333 2355667776 456678889999999887
Q ss_pred CC
Q 014366 355 TS 356 (426)
Q Consensus 355 ts 356 (426)
+.
T Consensus 150 ~~ 151 (227)
T 1cke_A 150 SS 151 (227)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 160
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.09 E-value=5.1e-11 Score=110.88 Aligned_cols=166 Identities=16% Similarity=0.139 Sum_probs=88.6
Q ss_pred cceee-eEEEeCCCEEEEECCCCCcHHHHHH-HHhcCCCCCccEEEEcCEeCCCCCHHHHh---cceEEEecCCCCCccc
Q 014366 204 VLDQL-NLHIRAGETVALIGPSGGGKSTLAK-LLLRLYDPLSGCILVDDHDVQNIRLDSLR---RHVGLVSQDITLFSGT 278 (426)
Q Consensus 204 ~l~~i-sl~i~~Ge~~~ivG~sGsGKSTLl~-ll~g~~~p~~G~I~~~g~~i~~~~~~~~r---~~i~~v~Q~~~lf~~t 278 (426)
.|+.+ .--+++|++++|.||||||||||+. ++.+..+...+.+++++.. +..+++ ..+++.+|+...
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~---- 82 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE---- 82 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH----
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh----
Confidence 46655 5568999999999999999999954 5555555544555555432 233322 235555543210
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc--CCCCEEEeeccCC
Q 014366 279 VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY--QNSSVLILDEATS 356 (426)
Q Consensus 279 i~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~--~~p~illlDEpts 356 (426)
.+|+.+...... .+ +. .... +....+. +....+....++.++ .+|+++++|+|++
T Consensus 83 -~~~l~~~~~~~~----~~-------~~---~~~~----~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~ 139 (247)
T 2dr3_A 83 -KGMFAMVDAFTA----GI-------GK---SKEY----EKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTT 139 (247)
T ss_dssp -HTSEEEEECSTT----TT-------CC-----CC----CSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGG
T ss_pred -CCcEEEEecchh----hc-------cc---cccc----ccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchH
Confidence 011111000000 00 00 0000 0000001 111223333333333 4799999999999
Q ss_pred CC--CHHHHHHHHHHHHHH-c-CCceEEEeccChHH--------H-HhcCEEEEEeC
Q 014366 357 AL--DSRSELLVRQAVDRL-L-GHHTVLVIAHHLET--------V-MMAKRVFLLDN 400 (426)
Q Consensus 357 ~L--D~~~~~~i~~~l~~~-~-~~~tvi~itH~~~~--------~-~~~D~i~vl~~ 400 (426)
-+ |+....+....+.+. + .+.|+|+++|.... + ..||.|+.|+.
T Consensus 140 l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 140 LYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp GTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 88 554444444445443 2 46899999998764 3 46999999964
No 161
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.08 E-value=1.1e-13 Score=130.56 Aligned_cols=155 Identities=16% Similarity=0.162 Sum_probs=104.2
Q ss_pred EEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEE
Q 014366 188 VKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGL 267 (426)
Q Consensus 188 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~ 267 (426)
.+++++.+.|.. +.+++++++++++| ++|+||||||||||+++|++... .|.+.++|.++........++.+++
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 455677766753 35899999999999 99999999999999999999885 7899999877644333344556788
Q ss_pred EecCCC-CCc-ccHHHHH-cCCCCCCC---CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHH
Q 014366 268 VSQDIT-LFS-GTVAENI-GYRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARA 341 (426)
Q Consensus 268 v~Q~~~-lf~-~ti~eni-~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARa 341 (426)
++|+.. .++ .++.||+ .++..... ...++..+. +..++ ..|||||+||+.+++|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH-----HHHHH---------------HHHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEEE
Confidence 888764 343 3677777 33221100 001111111 11222 2578999999999999
Q ss_pred hcCCCCEEEeeccCCC------------CCHHHHHHHHHHH
Q 014366 342 LYQNSSVLILDEATSA------------LDSRSELLVRQAV 370 (426)
Q Consensus 342 l~~~p~illlDEpts~------------LD~~~~~~i~~~l 370 (426)
+..+|++ +|++.-. .|.+.+..+++..
T Consensus 160 ~t~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 198 (254)
T 1ixz_A 160 ATNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRIH 198 (254)
T ss_dssp EESCGGG--SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred ccCCchh--CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHH
Confidence 9999987 7887642 3555565555543
No 162
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.04 E-value=4.1e-11 Score=107.62 Aligned_cols=26 Identities=46% Similarity=0.707 Sum_probs=24.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999998
No 163
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.03 E-value=5.9e-10 Score=110.24 Aligned_cols=142 Identities=18% Similarity=0.275 Sum_probs=82.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE-EEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI-LVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLM 289 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I-~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~ 289 (426)
-+++|+++.|.||+|||||||+..++.......|.+ +++... ..+. .+.+.+++.++ |+.+..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~-----------~l~i~~-- 120 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTD-----------SLLVSQ-- 120 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGG-----------GCEEEC--
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHH-----------HeEEec--
Confidence 478999999999999999999877775544334443 333321 1111 11111222111 111100
Q ss_pred CCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCC--CCEEEeeccCCCC---------
Q 014366 290 TKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQN--SSVLILDEATSAL--------- 358 (426)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~--p~illlDEpts~L--------- 358 (426)
..+. .|-+.++++++++ |+++++||+++-+
T Consensus 121 -------------------------------------~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~ 161 (349)
T 2zr9_A 121 -------------------------------------PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 161 (349)
T ss_dssp -------------------------------------CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC-
T ss_pred -------------------------------------CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccc
Confidence 0011 2334577877765 9999999999988
Q ss_pred -CH---HHHHHHHHHHHHH----c-CCceEEEeccChH----------------HHH-hcCEEEEEeCCEEEEec
Q 014366 359 -DS---RSELLVRQAVDRL----L-GHHTVLVIAHHLE----------------TVM-MAKRVFLLDNGKLEELN 407 (426)
Q Consensus 359 -D~---~~~~~i~~~l~~~----~-~~~tvi~itH~~~----------------~~~-~~D~i~vl~~G~i~e~g 407 (426)
|+ ...+.+.+.++++ + .+.|||+++|-.. .++ .||.++.++.+++...|
T Consensus 162 gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 162 GDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 32 1222344444443 2 2689999999543 244 69999999877655444
No 164
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.03 E-value=2.2e-11 Score=114.99 Aligned_cols=72 Identities=28% Similarity=0.299 Sum_probs=61.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHh---cCCCCCccEEE--------EcCEeCC-CCCHHHHhcceEEEecCC------CC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLL---RLYDPLSGCIL--------VDDHDVQ-NIRLDSLRRHVGLVSQDI------TL 274 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~---g~~~p~~G~I~--------~~g~~i~-~~~~~~~r~~i~~v~Q~~------~l 274 (426)
++|++++|+|||||||||++++|+ |++.|++|.++ .+|.++. ......+++.+++++|++ .+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999999 8999884 445678889999999754 34
Q ss_pred CcccHHHHHc
Q 014366 275 FSGTVAENIG 284 (426)
Q Consensus 275 f~~ti~eni~ 284 (426)
+..++.+|+.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 5567878763
No 165
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.01 E-value=1.8e-11 Score=129.87 Aligned_cols=157 Identities=16% Similarity=0.147 Sum_probs=104.9
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCc-cEEEEcCEeCCCCCHHHHhcceEEEecCC--------
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLS-GCILVDDHDVQNIRLDSLRRHVGLVSQDI-------- 272 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~-G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~-------- 272 (426)
..+++++++.+++|+.+.|+||||||||||+++|+++.++.. |.+.+++.+.... ...++++|+..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 358999999999999999999999999999999999999887 8888888765432 34588887754
Q ss_pred --------------CCC-cccHHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHH
Q 014366 273 --------------TLF-SGTVAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLA 337 (426)
Q Consensus 273 --------------~lf-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~ 337 (426)
+.+ ..++.+|+...+...... ..+.. ......+++.... . -......+|+|++|++.
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~-~~v~~--~~~~~~~L~G~~~----~-~~~~~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKA-PFIDA--TGAHAGALLGDVR----H-DPFQSGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSC-CEEEC--TTCCHHHHHCEEC----C-CCC----CCCCGGGGEE
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCC-CEEEc--CCCCHHhcCceEE----e-chhhcCCcccccccccc
Confidence 222 225555554322110000 00000 0111222222111 0 11122459999999999
Q ss_pred HHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHH
Q 014366 338 IARALYQNSSVLILDEATSALDSRSELLVRQAVDR 372 (426)
Q Consensus 338 iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~ 372 (426)
.++....++.+|+|||... |++.....+.+.|++
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999988 899999999999975
No 166
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.97 E-value=6.2e-11 Score=122.29 Aligned_cols=162 Identities=15% Similarity=0.167 Sum_probs=92.7
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc--CCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc---cc--
Q 014366 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLR--LYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS---GT-- 278 (426)
Q Consensus 206 ~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g--~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~---~t-- 278 (426)
+.+++++.++..+.|.|++||||||+++.|.. ++.++.|++.+.+.|.+......+.. -|+++. ..
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~~Vvtd~~ 230 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLTEVVTDMK 230 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSSSCBCSHH
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccceeecCHH
Confidence 35789999999999999999999999999876 67777788888877766432222211 122211 01
Q ss_pred -HHHHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHH----------HHHHHhcCCCC
Q 014366 279 -VAENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRL----------AIARALYQNSS 347 (426)
Q Consensus 279 -i~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl----------~iARal~~~p~ 347 (426)
+.+.+.... . .-++-.+.++..++.++. +|+..+ ...+|+||+||. ++|+++...|.
T Consensus 231 ~a~~~L~~~~---~-EmerR~~ll~~~Gv~~i~-----~yn~~~---~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 231 DAANALRWCV---N-EMERRYKLMSALGVRNLA-----GYNEKI---AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp HHHHHHHHHH---H-HHHHHHHHHHHTTCSSHH-----HHHHHH---HHHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred HHHHHHHHHH---H-HHHHHHHHHHHcCCccHH-----HHHHHH---HHHhhcCCcccccccccccchhccccccccCCc
Confidence 111111000 0 001111222222221111 000000 124678887752 46777888898
Q ss_pred -EEEeeccCCCCCHHHHHHHHHHHHHH----c-CCceEEEeccChH
Q 014366 348 -VLILDEATSALDSRSELLVRQAVDRL----L-GHHTVLVIAHHLE 387 (426)
Q Consensus 348 -illlDEpts~LD~~~~~~i~~~l~~~----~-~~~tvi~itH~~~ 387 (426)
++++||+++-+|.. .+.+.+.+.++ + .+.++|++|||++
T Consensus 299 ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 78899999988843 23444544433 2 2569999999987
No 167
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.95 E-value=9e-11 Score=120.22 Aligned_cols=177 Identities=11% Similarity=0.089 Sum_probs=107.7
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc-EEEEcCEeCCCCCHHHHhcce-EEEecCCCCCcccHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-CILVDDHDVQNIRLDSLRRHV-GLVSQDITLFSGTVA 280 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G-~I~~~g~~i~~~~~~~~r~~i-~~v~Q~~~lf~~ti~ 280 (426)
+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+ .+..++..++ +.... ...
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~------~~~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGN------INA- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHT------CCH-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcC------CCH-
Confidence 368888877999999999999999999999999987766445 56665432 3444444331 11110 001
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc--CCCCEEEeeccCCCC
Q 014366 281 ENIGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY--QNSSVLILDEATSAL 358 (426)
Q Consensus 281 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~--~~p~illlDEpts~L 358 (426)
+.+..+. .++++..+..+. .+.+...| -.+.+ ...+|.+|.+ +.+|.+. .+|+++++|+++.-.
T Consensus 261 ~~l~~g~----l~~~~~~~~~~a---~~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 261 QNLRTGK----LTPEDWGKLTMA---MGSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp HHHHTSC----CCHHHHHHHHHH---HHHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred HHHhcCC----CCHHHHHHHHHH---HHHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 1222221 223332222221 12222222 11222 3578999876 5667776 579999999999977
Q ss_pred CH--------HHHHHHHHHHHHHcC--CceEEEecc---------C--hH--------HHH-hcCEEEEEeCCEE
Q 014366 359 DS--------RSELLVRQAVDRLLG--HHTVLVIAH---------H--LE--------TVM-MAKRVFLLDNGKL 403 (426)
Q Consensus 359 D~--------~~~~~i~~~l~~~~~--~~tvi~itH---------~--~~--------~~~-~~D~i~vl~~G~i 403 (426)
+. .....+.+.|+.+.+ +.+||+++| + +. .+. .||.|++|..++.
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 43 222455666666542 679999999 2 32 343 6999999987654
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.84 E-value=8.5e-10 Score=99.57 Aligned_cols=36 Identities=25% Similarity=0.195 Sum_probs=31.3
Q ss_pred HHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHH
Q 014366 336 LAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRL 373 (426)
Q Consensus 336 l~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 373 (426)
...||+++.+|++.++| ||++|.....++.+.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999 9999999998888887653
No 169
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.84 E-value=1.7e-11 Score=122.39 Aligned_cols=139 Identities=17% Similarity=0.172 Sum_probs=87.3
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~en 282 (426)
.+++++|+++++|++++|+||||||||||+++|+|.+ +|.+...+ .. ...++..++++||...++ .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~~---~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--LP---LDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--SC---TTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--cc---chhHHHHHHHhcchhHHH----HHH
Confidence 5899999999999999999999999999999999954 67776511 11 112233478888887542 233
Q ss_pred HcCCCC-CCCC-CHHHHHHHHHHhchHHHHHh---------cCCCcc-----cccCCCCCCCChHHHHHHHHHHHhcCCC
Q 014366 283 IGYRDL-MTKI-DMERVEHTARTANADEFVRT---------LPQGYN-----THIGPRGSSLSGGQRQRLAIARALYQNS 346 (426)
Q Consensus 283 i~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~~---------lp~g~~-----t~~~~~g~~LSgGqkQRl~iARal~~~p 346 (426)
+..... .... ...... ....+.+.++. .|+-++ -.+..+...+++|++||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 332211 0000 000000 11123333321 011111 1234456778999999999998889999
Q ss_pred CEEE-eeccCC
Q 014366 347 SVLI-LDEATS 356 (426)
Q Consensus 347 ~ill-lDEpts 356 (426)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999987
No 170
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.83 E-value=1.2e-09 Score=117.06 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=92.9
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCC
Q 014366 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDP--LSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYR 286 (426)
Q Consensus 209 sl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p--~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~ 286 (426)
|+++++|..++|+|++|+|||||++.|++...+ ..|+| .+|..+.+....+.++.+++.+|...++..++..|+.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987665 77988 788888888888888899999999888777777776421
Q ss_pred CCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHH
Q 014366 287 DLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLV 366 (426)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i 366 (426)
....++ ..+... ..-..++-++++| |+.++|+.++..+
T Consensus 82 pG~~~f-~~~~~~----------------------------------------~l~~ad~~ilVvD-~~~g~~~qt~~~~ 119 (665)
T 2dy1_A 82 PGYGDF-VGEIRG----------------------------------------ALEAADAALVAVS-AEAGVQVGTERAW 119 (665)
T ss_dssp CCSGGG-HHHHHH----------------------------------------HHHHCSEEEEEEE-TTTCSCHHHHHHH
T ss_pred CCccch-HHHHHH----------------------------------------HHhhcCcEEEEEc-CCcccchhHHHHH
Confidence 111010 011111 1113456688888 8889888877443
Q ss_pred HHHHHHHcCCceEEEeccChHH
Q 014366 367 RQAVDRLLGHHTVLVIAHHLET 388 (426)
Q Consensus 367 ~~~l~~~~~~~tvi~itH~~~~ 388 (426)
. .+.+ .+.++|++.|.++.
T Consensus 120 ~-~~~~--~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 120 T-VAER--LGLPRMVVVTKLDK 138 (665)
T ss_dssp H-HHHH--TTCCEEEEEECGGG
T ss_pred H-HHHH--ccCCEEEEecCCch
Confidence 3 3332 25677788888764
No 171
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.83 E-value=5.7e-10 Score=101.26 Aligned_cols=83 Identities=27% Similarity=0.374 Sum_probs=63.7
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC-------------CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCC
Q 014366 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYD-------------PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF 275 (426)
Q Consensus 209 sl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~-------------p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf 275 (426)
|+...+|++++|+||||||||||++.|++.++ |..|+ ++|.+...++..++++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34456899999999999999999999999886 67787 689888778888887765 5888888
Q ss_pred cccHHHHHcCCCCCCCCCHHHHHHHHH
Q 014366 276 SGTVAENIGYRDLMTKIDMERVEHTAR 302 (426)
Q Consensus 276 ~~ti~eni~~~~~~~~~~~~~~~~~~~ 302 (426)
..++.+| .||. +.+.++++++
T Consensus 88 ~~~~~~n-~YGt-----~~~~v~~~l~ 108 (197)
T 3ney_A 88 FGSYQGN-MFGT-----KFETVHQIHK 108 (197)
T ss_dssp EEEETTE-EEEE-----EHHHHHHHHH
T ss_pred hhhhhce-eccc-----chhhHHHHHh
Confidence 8999999 4653 3444555444
No 172
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.72 E-value=1.3e-09 Score=98.89 Aligned_cols=70 Identities=16% Similarity=0.147 Sum_probs=48.4
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc-cHHHHH
Q 014366 209 NLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENI 283 (426)
Q Consensus 209 sl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eni 283 (426)
.++.++|++++|+|||||||||++++|++.+ |.+.++|.++... ....+...++++|++..+.. ++.+|+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 4567899999999999999999999999987 8999999776431 11122346888887655432 555554
No 173
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.72 E-value=1e-09 Score=97.91 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=47.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC-CccEEEE----------cCEeCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCILV----------DDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~I~~----------~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~en 282 (426)
+|++++|+||||||||||+++|++++++ ..|.|.. +|.++...+...+++ .+.|+.+++..++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~---~~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQ---DISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHH---HHHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHH---HHHcCCceEEEEEcCc
Confidence 6999999999999999999999999874 4555543 444444444445443 2446666677788887
No 174
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.69 E-value=1.5e-08 Score=104.01 Aligned_cols=113 Identities=19% Similarity=0.315 Sum_probs=75.5
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHH
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI 283 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni 283 (426)
.++++++.+++| +.|+||+|+|||||++++++.... . ++..+..+.+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------------------~---------f~~is~~~~~ 86 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------------------P---------FFHISGSDFV 86 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------------------C---------EEEEEGGGTT
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------------------C---------eeeCCHHHHH
Confidence 567777778877 889999999999999999983210 0 0111111111
Q ss_pred cCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccC--------
Q 014366 284 GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEAT-------- 355 (426)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpt-------- 355 (426)
.. + +| .|++++|-.+++|....|.+|++||+.
T Consensus 87 ~~---------------------------~-------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~ 126 (476)
T 2ce7_A 87 EL---------------------------F-------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126 (476)
T ss_dssp TC---------------------------C-------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---
T ss_pred HH---------------------------H-------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccc
Confidence 00 0 01 267889999999999999999999994
Q ss_pred --CCCCHHHHHHHHHHHHHHc-----CCceEEEeccChHHH
Q 014366 356 --SALDSRSELLVRQAVDRLL-----GHHTVLVIAHHLETV 389 (426)
Q Consensus 356 --s~LD~~~~~~i~~~l~~~~-----~~~tvi~itH~~~~~ 389 (426)
++.|.+.++.+.+.+..+. .+..||.+||+++.+
T Consensus 127 ~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 127 GLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred ccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 4677776666666665542 245788899998654
No 175
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.67 E-value=1.3e-09 Score=102.69 Aligned_cols=52 Identities=19% Similarity=0.405 Sum_probs=35.6
Q ss_pred cEEEEeE-EEEeCCCCCCcceeeeEEEeC---CCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 187 DVKFCNI-SFKYADNMPLVLDQLNLHIRA---GETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 187 ~i~~~~v-~~~y~~~~~~~l~~isl~i~~---Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|+ +|+|++. .++|+++||+|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~~-~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEE-QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCc-chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 9999332 4699999999999 9999999999999999999999854
No 176
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.67 E-value=6e-09 Score=94.27 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=41.8
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCC
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLF 275 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf 275 (426)
+++++|++++|+|||||||||++++|++++.|+.| +.+ +....... ...+..++|++|++..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~ 63 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAF 63 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHH
Confidence 46889999999999999999999999999977655 212 22222211 11123478888876543
No 177
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.65 E-value=1.4e-08 Score=100.85 Aligned_cols=143 Identities=20% Similarity=0.196 Sum_probs=82.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC-----------CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCC----CcccHHH
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYD-----------PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITL----FSGTVAE 281 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~-----------p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~l----f~~ti~e 281 (426)
+++|+|++|||||||++.|+|... |+.|.|.++|.++. +....|++.+.|.- |..| .+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~t-l~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVT-LS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHH-HH
Confidence 499999999999999999999875 67799999987652 23346666654431 2222 22
Q ss_pred HH------cCCCCCCCCCHHHHHHHHHHhchHHHHHhcC-CCcc-cccCCCCCCCChHHHHHHHHH----HHh-cCCCCE
Q 014366 282 NI------GYRDLMTKIDMERVEHTARTANADEFVRTLP-QGYN-THIGPRGSSLSGGQRQRLAIA----RAL-YQNSSV 348 (426)
Q Consensus 282 ni------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp-~g~~-t~~~~~g~~LSgGqkQRl~iA----Ral-~~~p~i 348 (426)
.+ .+.....+ ......+..+ ...+.+..+. .+.. -.+..+...+|+|++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~-~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~ 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTF-SENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV 330 (364)
T ss_dssp GGGGSSEEEEEEETTS-CHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHHhCCEEEEEEECCC-CcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE
Confidence 22 21111111 1100111111 1112222221 0111 122334456788899988877 666 545555
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHH
Q 014366 349 LILDEATSALDSRSELLVRQAVDRL 373 (426)
Q Consensus 349 lllDEpts~LD~~~~~~i~~~l~~~ 373 (426)
+|+|++|......+.+.|.+.
T Consensus 331 ----~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 ----IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp ----EECBTTTTBSHHHHHHHHHHH
T ss_pred ----EEEECCCCcCHHHHHHHHHHH
Confidence 899999999999999888765
No 178
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.64 E-value=9.2e-10 Score=113.61 Aligned_cols=141 Identities=17% Similarity=0.187 Sum_probs=96.1
Q ss_pred EEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEE
Q 014366 189 KFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLV 268 (426)
Q Consensus 189 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v 268 (426)
+++++...|.+ +.+++++++++++| +.|+||||+|||||+++|++... .+.+.+++.++.+.......+++..+
T Consensus 42 ~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 42 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 34555544543 34789999999999 99999999999999999999875 78999999887654433445567788
Q ss_pred ecCCC-CCcc-cHHHHHc-CCCCCCC---CCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHh
Q 014366 269 SQDIT-LFSG-TVAENIG-YRDLMTK---IDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARAL 342 (426)
Q Consensus 269 ~Q~~~-lf~~-ti~eni~-~~~~~~~---~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal 342 (426)
+|... ..+. .+.|++. ++..... ...++..+.+ ..++ ..|||||+|+..+++|.
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL---------------~~Ldg~~~~~~viviAa 175 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVMAA 175 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHH---------------HHGGGCCSSCCCEEEEC
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHH---------------HHhcccccCccEEEEEe
Confidence 88874 3333 6677773 3321110 0112222221 1222 24678888898999999
Q ss_pred cCCCCEEEeeccCCC
Q 014366 343 YQNSSVLILDEATSA 357 (426)
Q Consensus 343 ~~~p~illlDEpts~ 357 (426)
..+|++ ||||.-.
T Consensus 176 tn~p~~--LD~aLlr 188 (499)
T 2dhr_A 176 TNRPDI--LDPALLR 188 (499)
T ss_dssp CSCGGG--SCTTTSS
T ss_pred cCChhh--cCccccc
Confidence 999987 8888753
No 179
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.64 E-value=2e-09 Score=112.49 Aligned_cols=70 Identities=34% Similarity=0.477 Sum_probs=52.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc-EEE-EcCEeCCC-------CCHH---HHhcceEEEecCCCCCccc
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-CIL-VDDHDVQN-------IRLD---SLRRHVGLVSQDITLFSGT 278 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G-~I~-~~g~~i~~-------~~~~---~~r~~i~~v~Q~~~lf~~t 278 (426)
.+++|++++|+|+||||||||+++|+|.+.|++| ++. +||.++.. ++.. .+++.+++++|+. +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~ 439 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----T 439 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----H
Confidence 5789999999999999999999999999999987 774 88876532 2221 2345678888762 4
Q ss_pred HHHHHcC
Q 014366 279 VAENIGY 285 (426)
Q Consensus 279 i~eni~~ 285 (426)
..+|+.+
T Consensus 440 ~~~~ivi 446 (552)
T 3cr8_A 440 KNRGIAI 446 (552)
T ss_dssp HTTCEEE
T ss_pred hcCCEEE
Confidence 4555544
No 180
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.64 E-value=5.9e-09 Score=101.79 Aligned_cols=70 Identities=19% Similarity=0.269 Sum_probs=55.5
Q ss_pred ceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCH----HHH-----hcceEEE-ecCCCC
Q 014366 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRL----DSL-----RRHVGLV-SQDITL 274 (426)
Q Consensus 205 l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~----~~~-----r~~i~~v-~Q~~~l 274 (426)
++++||++++|++++++|+||+||||++..|++.+.+..|+|.+.+.|...... ..+ +..+.++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 457788889999999999999999999999999999999999998888754321 234 4568888 665433
No 181
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.63 E-value=6.4e-10 Score=100.91 Aligned_cols=61 Identities=30% Similarity=0.378 Sum_probs=45.8
Q ss_pred EeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE--EEcCEeCC
Q 014366 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI--LVDDHDVQ 254 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I--~~~g~~i~ 254 (426)
+|++..++. ....+..++..++|++++|+|||||||||++++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECS--VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CC--CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCcccccc--cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 355555543 346778888889999999999999999999999999987 77988 88876553
No 182
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.61 E-value=7.1e-09 Score=94.28 Aligned_cols=49 Identities=24% Similarity=0.242 Sum_probs=41.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGY 285 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~ 285 (426)
++++|++++|+|++||||||+++.|.+.++ .+.+++||+.++++ +|+.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~ 65 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIET 65 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCB
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhc
Confidence 678899999999999999999999999874 37899999888765 55544
No 183
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.59 E-value=1.6e-08 Score=99.91 Aligned_cols=59 Identities=19% Similarity=0.335 Sum_probs=43.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE-EEcCEeCCCCCHHHHhcceEEEecCC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI-LVDDHDVQNIRLDSLRRHVGLVSQDI 272 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I-~~~g~~i~~~~~~~~r~~i~~v~Q~~ 272 (426)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++.... + ..+.+++++.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchhhh
Confidence 388999999999999999999999999887777765 66654322 2 22445567666543
No 184
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.57 E-value=9.1e-09 Score=91.44 Aligned_cols=67 Identities=18% Similarity=0.259 Sum_probs=47.9
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCE--eCCCCCH----HHHhcceEEEecCCC
Q 014366 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDH--DVQNIRL----DSLRRHVGLVSQDIT 273 (426)
Q Consensus 206 ~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~--~i~~~~~----~~~r~~i~~v~Q~~~ 273 (426)
+++++++.+| +++|+||||||||||+++|.+++.+..|.....+. ++-.... ...+..|.+++|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 6889999999 99999999999999999999988887765432221 1110000 012456999999864
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.54 E-value=8.8e-08 Score=94.85 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=35.1
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc--CCCCCccEEEEcC
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR--LYDPLSGCILVDD 250 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g--~~~p~~G~I~~~g 250 (426)
.+|++++++++ .++++|++|||||||++.|.| ++++.+|.+.-..
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 47899999998 999999999999999999999 7777777765443
No 186
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.54 E-value=5e-08 Score=106.07 Aligned_cols=69 Identities=17% Similarity=0.123 Sum_probs=55.6
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccCC-CCCHHHHHHHHHHHHHHcC-CceEEE-eccChHHHH-hcC
Q 014366 325 GSSLSGGQRQRLAIARALYQNSSVLILDEATS-ALDSRSELLVRQAVDRLLG-HHTVLV-IAHHLETVM-MAK 393 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~~~p~illlDEpts-~LD~~~~~~i~~~l~~~~~-~~tvi~-itH~~~~~~-~~D 393 (426)
..-+|+|+.+|..++++++.+++++|+|||.. +||......+.+.+.+... .+++++ +||+.+.+. .++
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 45679999999999999999999999999997 9998877677776666554 357777 599987664 554
No 187
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.42 E-value=1.3e-07 Score=85.71 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=45.4
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHH---HhcCEEEEEeC
Q 014366 328 LSGGQRQRLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETV---MMAKRVFLLDN 400 (426)
Q Consensus 328 LSgGqkQRl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~---~~~D~i~vl~~ 400 (426)
.+.|+.+|..+++.+..+|+.+-.+ ++.++|...+.+.+.+.... +.++|+-+|.+... ..||++++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~-~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQT-APYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCC-SSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcC-CCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3678999999999999888754333 34567777766666665432 45788888887543 47999999864
No 188
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.41 E-value=6.9e-07 Score=88.32 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=49.8
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEee-ccCCCCCHHHHHHHHHHHHHHcCCceEEEec--cChH
Q 014366 325 GSSLSGGQRQRLAIARALYQNSSVLILD-EATSALDSRSELLVRQAVDRLLGHHTVLVIA--HHLE 387 (426)
Q Consensus 325 g~~LSgGqkQRl~iARal~~~p~illlD-Epts~LD~~~~~~i~~~l~~~~~~~tvi~it--H~~~ 387 (426)
...+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+...+..+|+|. ||+.
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 3578999999887 66666777888999 9999999998888888887765467888888 7763
No 189
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.39 E-value=1.4e-07 Score=85.30 Aligned_cols=38 Identities=32% Similarity=0.355 Sum_probs=24.9
Q ss_pred CCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 202 PLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 202 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999766
No 190
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.37 E-value=5.3e-08 Score=88.82 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=29.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC-CccEE
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP-LSGCI 246 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~I 246 (426)
++|++++|+||||||||||++.|++.++| ..+.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~ 40 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSI 40 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEE
Confidence 58999999999999999999999999987 33333
No 191
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.33 E-value=3e-06 Score=83.00 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=64.5
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHH
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENI 283 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni 283 (426)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....+.| .|+.=+ .+..+-.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~V-------------------l~fSlE-----ms~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGV-------------------AVFSLE-----MSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEE-------------------EEEESS-----SCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE-------------------EEEeCC-----CCHHHHH
Confidence 4555555689999999999999999999988775443222222 332211 1111100
Q ss_pred cCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccCCCC
Q 014366 284 GYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSVLILDEATSAL 358 (426)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~illlDEpts~L 358 (426)
.++........+.++.. ..||.+++||++.|...+.+++++|.|+|...+
T Consensus 91 -----------~Rlls~~~~v~~~~l~~--------------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si 140 (338)
T 4a1f_A 91 -----------LRALSDLTSINMHDLES--------------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI 140 (338)
T ss_dssp -----------HHHHHHHHCCCHHHHHH--------------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH
T ss_pred -----------HHHHHHhhCCCHHHHhc--------------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH
Confidence 11111111222222221 268999999999998888888999999886543
No 192
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.29 E-value=8.1e-08 Score=84.65 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=33.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ 254 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~ 254 (426)
.+|++++|+|+|||||||+++.|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999875 88899886654
No 193
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.26 E-value=1.9e-07 Score=84.66 Aligned_cols=46 Identities=22% Similarity=0.155 Sum_probs=39.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIR 257 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~ 257 (426)
.++|++++|+|+|||||||+++.|.+.+++..|.|.+.+.|....+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 5689999999999999999999999999988999988776654433
No 194
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.24 E-value=1.2e-06 Score=88.52 Aligned_cols=161 Identities=18% Similarity=0.116 Sum_probs=89.6
Q ss_pred EeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHH-HhcceEEEe
Q 014366 191 CNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDS-LRRHVGLVS 269 (426)
Q Consensus 191 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~-~r~~i~~v~ 269 (426)
+++++.|++. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|.......+ ++..
T Consensus 80 ~~L~~~~~~~--~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~----- 148 (425)
T 2ffh_A 80 EALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL----- 148 (425)
T ss_dssp HHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-----
T ss_pred HHHHHHhCCC--c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-----
Confidence 3455556432 1 567777 89999999999999999999999999999999999887765422111 1110
Q ss_pred cCCCCCcccHHHHHcCCCCCCCCCHHHH-HHHHHHhchHHHHHhc-CCCcccccCCCCCCCC---hHHHHHHHHHHHhcC
Q 014366 270 QDITLFSGTVAENIGYRDLMTKIDMERV-EHTARTANADEFVRTL-PQGYNTHIGPRGSSLS---GGQRQRLAIARALYQ 344 (426)
Q Consensus 270 Q~~~lf~~ti~eni~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~l-p~g~~t~~~~~g~~LS---gGqkQRl~iARal~~ 344 (426)
.-..|+.+.......+..++ .++ ++.+ ..++|..+=+.+..++ .-..+...+++++..
T Consensus 149 --------~~~~gv~v~~~~~~~~p~~i~~~~---------l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~p 211 (425)
T 2ffh_A 149 --------GEKVGVPVLEVMDGESPESIRRRV---------EEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGP 211 (425)
T ss_dssp --------HHHHTCCEEECCTTCCHHHHHHHH---------HHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCC
T ss_pred --------cccCCccEEecCCCCCHHHHHHHH---------HHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCC
Confidence 00112211000011123332 112 2222 1366654433222332 346777788888866
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEecc
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAH 384 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 384 (426)
++-++++| ++++.|.... .+.+.+. -+.+-+++|+
T Consensus 212 d~vlLVvD-a~tgq~av~~---a~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 212 DEVLLVLD-AMTGQEALSV---ARAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp SEEEEEEE-GGGTTHHHHH---HHHHHHH-TCCCEEEEES
T ss_pred ceEEEEEe-ccchHHHHHH---HHHHHhc-CCceEEEEeC
Confidence 66677788 5566554422 2233221 1346666665
No 195
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.23 E-value=3.3e-07 Score=84.85 Aligned_cols=63 Identities=17% Similarity=0.103 Sum_probs=48.1
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCC------CHHH----HhcceEEEecCCCCCc
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNI------RLDS----LRRHVGLVSQDITLFS 276 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~------~~~~----~r~~i~~v~Q~~~lf~ 276 (426)
.+.++|++++|.|+|||||||++++|.|+ .|+|.+.+.+.... .... .++.+++++|.+.++.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 35579999999999999999999999998 78899998875321 1111 1346788898876553
No 196
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.21 E-value=6e-06 Score=81.50 Aligned_cols=45 Identities=11% Similarity=0.038 Sum_probs=34.1
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHc----CCceEEEeccChHHH
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLL----GHHTVLVIAHHLETV 389 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~~~~~ 389 (426)
.+|.++++||+... |......+.+.+.+.. .+.++|++||+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45889999999876 8887777777775543 356888999998543
No 197
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.21 E-value=1.7e-06 Score=87.51 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=35.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i 253 (426)
++.+++++|++||||||++..|++.+.+..++|.+-+.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5689999999999999999999999998888888766553
No 198
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.18 E-value=2.3e-07 Score=91.83 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=49.3
Q ss_pred CccEEEEeEEEEeCCCCCCcce--------------eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 185 NGDVKFCNISFKYADNMPLVLD--------------QLNLHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~--------------~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+.+.|+||++.|+.. +..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 131 ~~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4579999999999975 46888 899999999999999999999999999999875
No 199
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.09 E-value=3.7e-07 Score=88.90 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=33.9
Q ss_pred cceeeeEEEeCCC------EEEEECCCCCcHHHHHHHHhcCCC--CCccEE
Q 014366 204 VLDQLNLHIRAGE------TVALIGPSGGGKSTLAKLLLRLYD--PLSGCI 246 (426)
Q Consensus 204 ~l~~isl~i~~Ge------~~~ivG~sGsGKSTLl~ll~g~~~--p~~G~I 246 (426)
.|++++..+.+++ ++||+||||||||||+++|.+++. |++|.+
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 5666666666555 999999999999999999999987 444543
No 200
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.07 E-value=1.4e-06 Score=85.01 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=25.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
-+++|+++.|.||+|||||||+..++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4889999999999999999999888754
No 201
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.01 E-value=6.9e-05 Score=71.38 Aligned_cols=71 Identities=21% Similarity=0.219 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEeeccCCCCCHH----------HHHHHHHHHHHHcC-----CceEEEeccChHH-----
Q 014366 329 SGGQRQRLAIARALYQNSSVLILDEATSALDSR----------SELLVRQAVDRLLG-----HHTVLVIAHHLET----- 388 (426)
Q Consensus 329 SgGqkQRl~iARal~~~p~illlDEpts~LD~~----------~~~~i~~~l~~~~~-----~~tvi~itH~~~~----- 388 (426)
++++++|..++++...+|.++++||+.+-++.. ....+...+..... +..+|.+|++++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 357778888888888899999999998876542 22234444443321 2356778887643
Q ss_pred HHhcCEEEEEe
Q 014366 389 VMMAKRVFLLD 399 (426)
Q Consensus 389 ~~~~D~i~vl~ 399 (426)
...+++++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 23577766553
No 202
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.99 E-value=3.7e-06 Score=82.65 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=25.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999988874
No 203
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.94 E-value=1.2e-06 Score=91.63 Aligned_cols=80 Identities=21% Similarity=0.252 Sum_probs=48.7
Q ss_pred EEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEe
Q 014366 190 FCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVS 269 (426)
Q Consensus 190 ~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~ 269 (426)
++++...|.. ..+++++++++ +|+.++|+||||+|||||+++|++...+..|.|.++|...........++.+|+.+
T Consensus 86 ~~~vk~~i~~--~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~ 162 (543)
T 3m6a_A 86 LEKVKERILE--YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMP 162 (543)
T ss_dssp CHHHHHHHHH--HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------------------
T ss_pred HHHHHHHHHH--HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCc
Confidence 3455555532 24678888888 89999999999999999999999999999999988874321111122234566666
Q ss_pred cCC
Q 014366 270 QDI 272 (426)
Q Consensus 270 Q~~ 272 (426)
|..
T Consensus 163 ~~~ 165 (543)
T 3m6a_A 163 GRI 165 (543)
T ss_dssp -CH
T ss_pred hHH
Confidence 543
No 204
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.93 E-value=1.3e-05 Score=81.46 Aligned_cols=67 Identities=9% Similarity=0.245 Sum_probs=44.2
Q ss_pred CCCCEEEeeccCCCCCH-HHHHHHHHHHHHHc-CCceEEEeccCh-HHHH-hcCEEEE-EeCCEEEEecccc
Q 014366 344 QNSSVLILDEATSALDS-RSELLVRQAVDRLL-GHHTVLVIAHHL-ETVM-MAKRVFL-LDNGKLEELNRST 410 (426)
Q Consensus 344 ~~p~illlDEpts~LD~-~~~~~i~~~l~~~~-~~~tvi~itH~~-~~~~-~~D~i~v-l~~G~i~e~g~~~ 410 (426)
.+|++|++||+..-.+. .++..+...+..+. .++.+|++||+. ..+. ..+++.- ++.|.+++.++|+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887765 57777888887764 467889999984 3221 1222221 3456666665553
No 205
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.92 E-value=1.4e-06 Score=85.22 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=37.4
Q ss_pred CcceeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhcCCCCCcc
Q 014366 203 LVLDQLNLHIRAGET--VALIGPSGGGKSTLAKLLLRLYDPLSG 244 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~--~~ivG~sGsGKSTLl~ll~g~~~p~~G 244 (426)
.+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 488899999999998 999999999999999999998766544
No 206
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.90 E-value=7.1e-05 Score=69.13 Aligned_cols=29 Identities=31% Similarity=0.420 Sum_probs=24.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccE
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPLSGC 245 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~ 245 (426)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 68999999999999999999977666553
No 207
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.89 E-value=7.1e-06 Score=83.33 Aligned_cols=68 Identities=25% Similarity=0.405 Sum_probs=42.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC------------CCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCcc-cHHHHH
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYD------------PLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFSG-TVAENI 283 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~------------p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eni 283 (426)
.++|+|+||+|||||++.|+|... |.+|.+.++|.++.-++..-.++..++.+|....|.. +..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 799999999999999999999853 6789999999876544444445555555566555543 444454
Q ss_pred c
Q 014366 284 G 284 (426)
Q Consensus 284 ~ 284 (426)
.
T Consensus 262 ~ 262 (439)
T 1mky_A 262 E 262 (439)
T ss_dssp H
T ss_pred h
Confidence 3
No 208
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.88 E-value=2.3e-06 Score=75.56 Aligned_cols=40 Identities=35% Similarity=0.488 Sum_probs=33.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc--EEEEcCEeC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSG--CILVDDHDV 253 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G--~I~~~g~~i 253 (426)
++|++++|+|++||||||+.++|.+.+++ .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998866 56 666776444
No 209
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.86 E-value=4.7e-05 Score=73.78 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=28.9
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
.|+++.--+++|+.+.|.|++|+|||||+..++.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4666665689999999999999999999887764
No 210
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.85 E-value=6e-06 Score=72.17 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=28.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g 250 (426)
.|++++|+|+|||||||++++|++.+.+ +.+++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 55654
No 211
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.84 E-value=1.5e-06 Score=85.38 Aligned_cols=52 Identities=21% Similarity=0.125 Sum_probs=46.2
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ 254 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~ 254 (426)
.+++++++++++|.+++|+|++|+|||||++.|++.+.+..|++.+-+.+..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 4788999999999999999999999999999999999888888887666553
No 212
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.83 E-value=1.8e-06 Score=94.22 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=29.1
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
|.+++|+.+.|+||||||||||+++|++.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999999999998743
No 213
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.80 E-value=5.8e-06 Score=81.26 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=26.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
+++..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999877553
No 214
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.78 E-value=5.9e-06 Score=76.49 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=32.3
Q ss_pred ceeeeEEEe---CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEc
Q 014366 205 LDQLNLHIR---AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVD 249 (426)
Q Consensus 205 l~~isl~i~---~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~ 249 (426)
|.++|+++. +|.+++|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 566666665 8999999999999999999999999987 6666543
No 215
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.77 E-value=1.2e-05 Score=77.61 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=73.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE-cCEeCCCCCHHHHhcceEEEecCCCCCcccHHHHHcCCCCCCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV-DDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAENIGYRDLMTKI 292 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~-~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eni~~~~~~~~~ 292 (426)
++.+++|+|++|+|||||++.|.|.. +.+ .+.+ .....+..++++++..-+ ++.|. ++.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~-----~tTr~~~~gi~~~~~~~i--~~iDT-------pG~ 66 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKA-----QTTRHRIVGIHTEGAYQA--IYVDT-------PGL 66 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCS-----SCCSSCEEEEEEETTEEE--EEESS-------SSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCC-----CcceeeEEEEEEECCeeE--EEEEC-------cCC
Confidence 34489999999999999999999863 211 1111 011234467777754311 11110 011
Q ss_pred CHHHHHHHHHHhchHHHHHhcCC---Ccccc---cCCCCCCCChHHHHHHHHHHHhc--CCCCEEEeeccCCCCCHHH-H
Q 014366 293 DMERVEHTARTANADEFVRTLPQ---GYNTH---IGPRGSSLSGGQRQRLAIARALY--QNSSVLILDEATSALDSRS-E 363 (426)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~~~lp~---g~~t~---~~~~g~~LSgGqkQRl~iARal~--~~p~illlDEpts~LD~~~-~ 363 (426)
.. +....+.. ++...... ..|.. ++. ..+|+|++ .+++.+. ..|.++++ +-+|... +
T Consensus 67 ~~-~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~ 132 (301)
T 1ega_A 67 HM-EEKRAINR----LMNKAASSSIGDVELVIFVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEK 132 (301)
T ss_dssp CH-HHHHHHHH----HHTCCTTSCCCCEEEEEEEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCH
T ss_pred Cc-cchhhHHH----HHHHHHHHHHhcCCEEEEEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccH
Confidence 10 00111110 11111111 12211 222 23898886 5566665 67888888 7888776 5
Q ss_pred HHHHHHHHHHcC--C--ceEEEeccChHHH
Q 014366 364 LLVRQAVDRLLG--H--HTVLVIAHHLETV 389 (426)
Q Consensus 364 ~~i~~~l~~~~~--~--~tvi~itH~~~~~ 389 (426)
..+.+.+.++.+ + ..+.+++|+-.-+
T Consensus 133 ~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 133 ADLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp HHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 666677766543 2 3566667765443
No 216
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.74 E-value=6.7e-06 Score=81.04 Aligned_cols=42 Identities=26% Similarity=0.291 Sum_probs=36.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ 254 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~ 254 (426)
+++.+++|+|++|||||||++.|+|.+.|.+|+|.+.+.|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 356799999999999999999999999888898888776654
No 217
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.73 E-value=3.6e-06 Score=76.56 Aligned_cols=43 Identities=33% Similarity=0.263 Sum_probs=37.3
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc--EEEEcCEe
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG--CILVDDHD 252 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G--~I~~~g~~ 252 (426)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.+++.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 44678999999999999999999999999988888 88887533
No 218
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.71 E-value=2e-05 Score=67.89 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=25.1
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 014366 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 206 ~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~ 236 (426)
++.++++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455666665 99999999999999999987
No 219
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.69 E-value=2.9e-05 Score=71.80 Aligned_cols=144 Identities=17% Similarity=0.120 Sum_probs=76.4
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCCCCHHHHhcceEEEecCCCCCc-ccHHHHHcCCCCCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQNIRLDSLRRHVGLVSQDITLFS-GTVAENIGYRDLMT 290 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eni~~~~~~~ 290 (426)
+.+|+.+.++||+||||||++.++........|. ...+.++.+.|.... .++.+|+......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~- 135 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE- 135 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC-
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc-
Confidence 4578999999999999999888664321111110 124567777776543 3677776421110
Q ss_pred CCCHHHHHHHHHHhchHHHHHhcCCCcccccCCC---CCCCChHHHHHHHHHHHhcCCCCEEEeeccCC-CCCHHHHHHH
Q 014366 291 KIDMERVEHTARTANADEFVRTLPQGYNTHIGPR---GSSLSGGQRQRLAIARALYQNSSVLILDEATS-ALDSRSELLV 366 (426)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~---g~~LSgGqkQRl~iARal~~~p~illlDEpts-~LD~~~~~~i 366 (426)
... ...+.. ...+...... ..-.+.|.-.+.. +..+.+-+++|+||+-. ++|.......
T Consensus 136 ~~~--------~~~g~~-------~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~ 198 (235)
T 3llm_A 136 EPG--------KSCGYS-------VRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVV 198 (235)
T ss_dssp CTT--------SSEEEE-------ETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHH
T ss_pred ccC--------ceEEEe-------echhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHH
Confidence 000 000000 0001111000 1112456655553 44689999999999976 5777766444
Q ss_pred HHHHHHHcCC-ceEEEe-ccChHHH
Q 014366 367 RQAVDRLLGH-HTVLVI-AHHLETV 389 (426)
Q Consensus 367 ~~~l~~~~~~-~tvi~i-tH~~~~~ 389 (426)
.+.+.....+ +++++. |...+.+
T Consensus 199 l~~i~~~~~~~~~il~SAT~~~~~~ 223 (235)
T 3llm_A 199 LRDVVQAYPEVRIVLMSATIDTSMF 223 (235)
T ss_dssp HHHHHHHCTTSEEEEEECSSCCHHH
T ss_pred HHHHHhhCCCCeEEEEecCCCHHHH
Confidence 4444444333 455544 5555444
No 220
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.67 E-value=8.1e-06 Score=73.25 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=38.6
Q ss_pred EEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC----C----CCCccEEEEcCEe
Q 014366 194 SFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL----Y----DPLSGCILVDDHD 252 (426)
Q Consensus 194 ~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~----~----~p~~G~I~~~g~~ 252 (426)
+++|++- ..+++++|++.+++ .++++|++|+|||||++.+.+- + .++.+.+.++|..
T Consensus 6 ~~~~~~~-~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 6 DWIYSGF-SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp --------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHHH-HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 4567654 35899999988887 6899999999999999999862 2 2345666666643
No 221
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.61 E-value=7.8e-05 Score=72.15 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
.+..+.|.||+|+|||||++.+++...+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3568999999999999999999986643
No 222
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.61 E-value=8.4e-06 Score=73.68 Aligned_cols=30 Identities=37% Similarity=0.544 Sum_probs=26.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
...+|.+++|+|||||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 457899999999999999999999998764
No 223
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.59 E-value=4.6e-05 Score=72.97 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=27.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCccEE
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I 246 (426)
..+.|+||+|+||||+++.|++...+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5799999999999999999999887766643
No 224
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.59 E-value=4.5e-05 Score=67.78 Aligned_cols=47 Identities=28% Similarity=0.449 Sum_probs=27.3
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc----CCCC----CccEEEEcCE
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR----LYDP----LSGCILVDDH 251 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g----~~~p----~~G~I~~~g~ 251 (426)
+++++|++.++. .++++|++|+|||||++.+.+ .+.| +.+.+.++|.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 788999988877 889999999999999999987 2223 3455566654
No 225
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.58 E-value=8e-05 Score=66.73 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=23.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
..+.|.||+|+|||||++.++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999976543
No 226
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.57 E-value=4.7e-05 Score=66.55 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=23.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 227
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.53 E-value=6.9e-06 Score=76.24 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=43.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---cCCCCCccEEE--------EcCEeCCCCC-HHHHhcceEEEec------CCCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLL---RLYDPLSGCIL--------VDDHDVQNIR-LDSLRRHVGLVSQ------DITLF 275 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~---g~~~p~~G~I~--------~~g~~i~~~~-~~~~r~~i~~v~Q------~~~lf 275 (426)
..-+++|.||+||||||+.+.|+ |+...+.|.++ -.|.++.+.. ..++.+.+.+.++ ..+++
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 34589999999999999999998 55556666662 3455544321 2344455666663 23333
Q ss_pred cccHHHHH
Q 014366 276 SGTVAENI 283 (426)
Q Consensus 276 ~~ti~eni 283 (426)
...|.++|
T Consensus 88 g~~v~~~i 95 (233)
T 3r20_A 88 GEDVSSEI 95 (233)
T ss_dssp TEECTTGG
T ss_pred Ceehhhhh
Confidence 44565555
No 228
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.52 E-value=0.00012 Score=70.37 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=26.9
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 210 LHIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 210 l~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.++++..+.|.||+|+|||||++.+++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346789999999999999999999999865
No 229
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.51 E-value=1.6e-05 Score=77.46 Aligned_cols=43 Identities=16% Similarity=0.349 Sum_probs=33.8
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHH
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLET 388 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 388 (426)
++.++++|| ...+++.....+.+.+.+......+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 667999999 6789999888898888876555567777777653
No 230
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.49 E-value=0.0002 Score=67.59 Aligned_cols=28 Identities=36% Similarity=0.508 Sum_probs=24.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++++..+.|.||+|+||||+++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999998764
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.47 E-value=1.4e-05 Score=77.05 Aligned_cols=47 Identities=23% Similarity=0.176 Sum_probs=41.3
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCCC
Q 014366 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQN 255 (426)
Q Consensus 208 isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~~ 255 (426)
++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 667766 99999999999999999999999999888999988777643
No 232
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.44 E-value=4.8e-05 Score=69.47 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
++..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987554
No 233
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.42 E-value=0.00065 Score=66.93 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=24.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++|+++.|.|++|+|||||...++.-.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999997776543
No 234
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.42 E-value=6.4e-05 Score=66.69 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=26.7
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 207 ~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
++|++.++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999875
No 235
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.38 E-value=5e-05 Score=67.28 Aligned_cols=39 Identities=33% Similarity=0.423 Sum_probs=32.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE-EEcC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI-LVDD 250 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I-~~~g 250 (426)
..+|.++.|+|++||||||+.+.|++.+.+..|.+ .+++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 45789999999999999999999999887777765 3443
No 236
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.36 E-value=0.00011 Score=66.64 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=24.7
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 014366 206 DQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 206 ~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~ 236 (426)
.+.++++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3456666665 99999999999999999875
No 237
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.30 E-value=0.00025 Score=64.13 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=33.7
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHH
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETV 389 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 389 (426)
.+|.++++||+-. +|......+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4678999999866 78888888877776544456788888886543
No 238
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.30 E-value=1.1e-07 Score=90.09 Aligned_cols=73 Identities=18% Similarity=0.067 Sum_probs=63.2
Q ss_pred cCCCcccccCCCCCCCChHHHHHHHHHHHhcCCCCE--EEeeccCCCCCHHH---------HHHHHHHHHHHcCCceEEE
Q 014366 313 LPQGYNTHIGPRGSSLSGGQRQRLAIARALYQNSSV--LILDEATSALDSRS---------ELLVRQAVDRLLGHHTVLV 381 (426)
Q Consensus 313 lp~g~~t~~~~~g~~LSgGqkQRl~iARal~~~p~i--lllDEpts~LD~~~---------~~~i~~~l~~~~~~~tvi~ 381 (426)
++.++++.+++++..+|+| ||++++|+++.+|++ +|+||+|+++|... +..+.+.++...+++|.+.
T Consensus 158 l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~ 235 (261)
T 2eyu_A 158 LSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLE 235 (261)
T ss_dssp HHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHH
T ss_pred HHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHH
Confidence 4558999999999999999 999999999999999 99999999999873 3456777777778999999
Q ss_pred eccChH
Q 014366 382 IAHHLE 387 (426)
Q Consensus 382 itH~~~ 387 (426)
++||+.
T Consensus 236 ~a~r~~ 241 (261)
T 2eyu_A 236 DAMEAS 241 (261)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 999874
No 239
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.29 E-value=0.00023 Score=61.37 Aligned_cols=24 Identities=38% Similarity=0.360 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999998653
No 240
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.29 E-value=1.8e-05 Score=78.30 Aligned_cols=58 Identities=26% Similarity=0.238 Sum_probs=36.4
Q ss_pred CccEEEEeEEEEeCCCCCCcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 014366 185 NGDVKFCNISFKYADNMPLVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (426)
Q Consensus 185 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g 250 (426)
.+.+.++|++..|... .++++++|+| +|+|++|+|||||++.|.+...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~~k--~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHHTH--HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhCCe--eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 3568889998888643 4789999876 99999999999999999987666555544433
No 241
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.27 E-value=0.00013 Score=72.89 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=34.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCccEEEEcCE
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRL-----------YDPLSGCILVDDH 251 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~-----------~~p~~G~I~~~g~ 251 (426)
.+..|..++|+|++|+|||||++.|+|. ..|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567889999999999999999999998 6788888887663
No 242
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.26 E-value=0.00016 Score=63.38 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+++-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 243
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.25 E-value=0.001 Score=56.42 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=29.4
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccC
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHH 385 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~ 385 (426)
+..+|++||.- .|++..+..+.+.+.....+..+|.+|++
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 34689999984 68888888888888554444566777765
No 244
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.22 E-value=7.7e-05 Score=66.95 Aligned_cols=34 Identities=21% Similarity=0.474 Sum_probs=27.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEe
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD 252 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~ 252 (426)
..+++|+|++||||||+.+.|++.+ |...+++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence 5689999999999999999998876 445555433
No 245
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.18 E-value=0.00016 Score=64.91 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 246
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.17 E-value=0.00014 Score=72.11 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=44.4
Q ss_pred HHHHHHHhcCCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHHHHhcCEEEEE
Q 014366 335 RLAIARALYQNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLETVMMAKRVFLL 398 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~D~i~vl 398 (426)
+.+|+++|..+|+++++|||+ |+++.. ..++....+.+++.++|..+....+||++.|
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRAAETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHHTTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHHhcCCEEEEEECcchHHHHHHHHHHh
Confidence 569999999999999999999 776543 3444444578999999997755567776443
No 247
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.17 E-value=0.00015 Score=64.06 Aligned_cols=38 Identities=34% Similarity=0.318 Sum_probs=29.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEEcCEe
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYDPL---SGCILVDDHD 252 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~I~~~g~~ 252 (426)
-..++|+|+||||||||++.|.+.+++. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3589999999999999999999876543 3677776644
No 248
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.11 E-value=9.1e-05 Score=69.30 Aligned_cols=41 Identities=20% Similarity=0.423 Sum_probs=32.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDV 253 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i 253 (426)
..+++..+.|+|++||||||+.+.|...+. .|.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 455678999999999999999999998774 35677777544
No 249
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.10 E-value=0.00025 Score=62.37 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
+++|+|++|+|||||++.+++...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
No 250
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.09 E-value=0.00022 Score=66.44 Aligned_cols=45 Identities=29% Similarity=0.431 Sum_probs=29.2
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEe
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD 252 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~ 252 (426)
.++++++..++| +.|+||+|+||||+++.+++.+... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 344445555555 8999999999999999999876422 35555543
No 251
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.99 E-value=0.00047 Score=70.16 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccCC-CCCHHHHHHHHHHHHHHcCCceEEEeccChHHH
Q 014366 331 GQRQRLAIARALYQNSSVLILDEATS-ALDSRSELLVRQAVDRLLGHHTVLVIAHHLETV 389 (426)
Q Consensus 331 GqkQRl~iARal~~~p~illlDEpts-~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 389 (426)
.|.+....+...+.+++++|+..... ++... ...+.+.+++ .++.+|++.+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH--cCCCEEEEEECccch
Confidence 47777788888889999888765544 34444 4456666654 357788888877654
No 252
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.98 E-value=0.0003 Score=61.85 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=23.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998543
No 253
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.98 E-value=0.00027 Score=70.35 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=44.7
Q ss_pred CCCCEEEeeccCCCCC---HHHHHHHHHHHHHHcC-CceEEEeccChHHH-------------HhcCEEEEEeCC
Q 014366 344 QNSSVLILDEATSALD---SRSELLVRQAVDRLLG-HHTVLVIAHHLETV-------------MMAKRVFLLDNG 401 (426)
Q Consensus 344 ~~p~illlDEpts~LD---~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~-------------~~~D~i~vl~~G 401 (426)
..|.++++||.=.-++ +.....+.+.+++.++ +..++++||+++.+ ..|+..+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 3588999999988885 6677778888877754 67899999998644 347777777654
No 254
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.95 E-value=0.0036 Score=57.91 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+..-+.|.||+|+||||+++.++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44568899999999999999998754
No 255
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.95 E-value=0.0013 Score=61.12 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++|+|++|+|||||++.|+|--
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999854
No 256
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.95 E-value=0.0001 Score=72.28 Aligned_cols=37 Identities=38% Similarity=0.509 Sum_probs=33.0
Q ss_pred CcceeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhcCC
Q 014366 203 LVLDQLNLHIRAGET--VALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~--~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 367888888999998 9999999999999999998754
No 257
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.90 E-value=0.00055 Score=59.70 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
|.++.|+|++||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999998664
No 258
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.89 E-value=0.0005 Score=63.32 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=27.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhc---CCCCCccEE
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLR---LYDPLSGCI 246 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g---~~~p~~G~I 246 (426)
-++|.+++|+|++||||||+.+.|++ +..++.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~ 50 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 50 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence 45789999999999999999999986 333444544
No 259
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.87 E-value=0.00054 Score=67.80 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=27.1
Q ss_pred ceeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 014366 205 LDQLNLHIRAGETVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 205 l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~ 236 (426)
+++..+++.+| +.+|+|||||||||++..|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46778888776 99999999999999999876
No 260
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.84 E-value=0.0095 Score=56.57 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++..+.|.||+|+||||+++.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999888765
No 261
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.83 E-value=0.0012 Score=58.03 Aligned_cols=36 Identities=33% Similarity=0.495 Sum_probs=27.3
Q ss_pred EEEEECCCCCcHHHHHHHHh-cC----CCCCcc----EEEEcCEe
Q 014366 217 TVALIGPSGGGKSTLAKLLL-RL----YDPLSG----CILVDDHD 252 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~-g~----~~p~~G----~I~~~g~~ 252 (426)
.++|+|++|+|||||++.+. +- +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 69999999999999996554 44 567766 56666643
No 262
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.83 E-value=0.0006 Score=58.85 Aligned_cols=23 Identities=35% Similarity=0.280 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++|+|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 263
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.82 E-value=0.004 Score=61.10 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=23.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+...+.|.||+|+||||+++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998754
No 264
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.81 E-value=0.0014 Score=64.02 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=24.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
..+..+.|.||+|+||||+++.+.....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999987653
No 265
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.79 E-value=0.00063 Score=60.50 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999843
No 266
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.78 E-value=0.0041 Score=60.73 Aligned_cols=38 Identities=24% Similarity=0.363 Sum_probs=29.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g 250 (426)
.+|..+.|.||+|+||||+++.++.........+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 35678999999999999999999987754434445444
No 267
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.77 E-value=0.0006 Score=60.68 Aligned_cols=31 Identities=35% Similarity=0.461 Sum_probs=26.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g 250 (426)
..+++|+|++||||||+.+.|+.. |-..+|.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 357999999999999999999985 6666654
No 268
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.76 E-value=0.0002 Score=64.50 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
+++|+|++||||||+++.|...+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999887644
No 269
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.75 E-value=0.0008 Score=59.11 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+|.++.|.|++||||||+.+.|...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998754
No 270
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.74 E-value=0.0018 Score=65.56 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=80.7
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc-EEEEcCEeCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSG-CILVDDHDVQNIRLDSLRRHVGLVSQDITLFSGTVAEN 282 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G-~I~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~en 282 (426)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....| .+.+-. .+.+..++..++- .+...+-...++.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s---lE~~~~~l~~R~~--~~~~~i~~~~l~~- 262 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS---LEMPAAQLTLRMM--CSEARIDMNRVRL- 262 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE---SSSCHHHHHHHHH--HHHTTCCTTTCCG-
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE---CCCCHHHHHHHHH--HHHcCCCHHHHhC-
Confidence 46666655899999999999999999999877765433222 333321 1234444433210 0000000000110
Q ss_pred HcCCCCCCCCCHHHHHHHHHHhchHHHHHhcCCCcccccCCCCCCCChHHHHHHHHHHHhc--CCCCEEEeeccCCCCCH
Q 014366 283 IGYRDLMTKIDMERVEHTARTANADEFVRTLPQGYNTHIGPRGSSLSGGQRQRLAIARALY--QNSSVLILDEATSALDS 360 (426)
Q Consensus 283 i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~~~g~~LSgGqkQRl~iARal~--~~p~illlDEpts~LD~ 360 (426)
+ ..++++..+..+.. +.+...|- .+.+ ...+|..+- .+.+|.+. .+|+++++|..+.-.+.
T Consensus 263 ---g----~l~~~~~~~~~~a~---~~l~~~~l----~i~d-~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 263 ---G----QLTDRDFSRLVDVA---SRLSEAPI----YIDD-TPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp ---G----GCCHHHHHHHHHHH---HHHHTSCE----EEEC-CTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC
T ss_pred ---C----CCCHHHHHHHHHHH---HHHhcCCE----EEEC-CCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCC
Confidence 1 12333332222221 22322221 1111 235666543 45566665 47999999999865433
Q ss_pred ------HH-H---HHHHHHHHHHcCCceEEEec
Q 014366 361 ------RS-E---LLVRQAVDRLLGHHTVLVIA 383 (426)
Q Consensus 361 ------~~-~---~~i~~~l~~~~~~~tvi~it 383 (426)
.+ . ..+.+.|+.+.+..-+-++.
T Consensus 326 ~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~ 358 (444)
T 2q6t_A 326 GSGKSGENRQQEIAAISRGLKALARELGIPIIA 358 (444)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 12 2 34555566666667788883
No 271
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.73 E-value=0.0021 Score=59.00 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=34.5
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccC-----------hHHHHhcCEEEEEe
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHH-----------LETVMMAKRVFLLD 399 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~-----------~~~~~~~D~i~vl~ 399 (426)
+|+++++||.-- |+.+.-+ +...+.+ .+.+||++-|+ .+.+..||+|..|+
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve-~l~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICE-VANILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHH-HHHHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHH-HHHHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 7655322 2233333 37899999992 23456899999864
No 272
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.72 E-value=0.0066 Score=61.32 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=27.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILV 248 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~ 248 (426)
++.+++++|++|+||||++.-|+..+....-++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45699999999999999999999877654344544
No 273
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.69 E-value=0.0036 Score=55.59 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=31.4
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChH
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLE 387 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 387 (426)
.++.++++||. ..++......+.+.+.+...+..+|++|++..
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 36889999996 45777777778888776544556777777664
No 274
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.67 E-value=0.00087 Score=60.69 Aligned_cols=24 Identities=42% Similarity=0.455 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
++-+++|+|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
No 275
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.65 E-value=0.0014 Score=64.58 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=30.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc-----------CCCCCccEEEEcC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLR-----------LYDPLSGCILVDD 250 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g-----------~~~p~~G~I~~~g 250 (426)
|-.++|+|.+|+|||||++.|++ -..|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45799999999999999999998 3457788887765
No 276
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.65 E-value=0.00094 Score=57.45 Aligned_cols=19 Identities=47% Similarity=0.758 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 014366 217 TVALIGPSGGGKSTLAKLL 235 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll 235 (426)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 277
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.64 E-value=0.00079 Score=59.35 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++|.++.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998644
No 278
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.64 E-value=0.001 Score=58.33 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998644
No 279
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.64 E-value=0.018 Score=55.57 Aligned_cols=27 Identities=37% Similarity=0.449 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+..-+.|.||+|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 355679999999999999999999865
No 280
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.63 E-value=0.0012 Score=58.81 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=24.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+|.+++|.|+.||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999876
No 281
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.61 E-value=0.00098 Score=58.38 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
=.++++|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999875
No 282
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.59 E-value=0.0011 Score=63.28 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=27.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDD 250 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g 250 (426)
+|..+.|.|||||||||+.+.|..-++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 466899999999999999999987553 35566654
No 283
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.58 E-value=0.00093 Score=59.63 Aligned_cols=42 Identities=38% Similarity=0.665 Sum_probs=28.8
Q ss_pred EEEECCCCCcHHHHHHHHhcCC-------------CCCccEEEEcCEeCCCCCHHHH
Q 014366 218 VALIGPSGGGKSTLAKLLLRLY-------------DPLSGCILVDDHDVQNIRLDSL 261 (426)
Q Consensus 218 ~~ivG~sGsGKSTLl~ll~g~~-------------~p~~G~I~~~g~~i~~~~~~~~ 261 (426)
+.|+||||||||||++.|..-+ +|..|++ ||++.--++.++.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF 58 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEF 58 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHH
Confidence 7899999999999999887443 2344543 5665554555444
No 284
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.53 E-value=0.0011 Score=63.95 Aligned_cols=47 Identities=28% Similarity=0.200 Sum_probs=36.1
Q ss_pred CcceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc----CCCCCccEEEEcC
Q 014366 203 LVLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR----LYDPLSGCILVDD 250 (426)
Q Consensus 203 ~~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g----~~~p~~G~I~~~g 250 (426)
..+++..+.+ .|.-++|.|+||+||||+...+.+ +...+...|...+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 3677777877 788999999999999999998886 4444555554433
No 285
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.50 E-value=0.0012 Score=57.69 Aligned_cols=27 Identities=33% Similarity=0.319 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++..+.|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998443
No 286
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.47 E-value=0.0012 Score=61.63 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++|+||+|||||||.+.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 287
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.47 E-value=0.0098 Score=60.22 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=26.9
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
-|+.+.--+++|+.+.|.|++|+|||||+--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3454443589999999999999999999866654
No 288
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.45 E-value=0.0014 Score=57.84 Aligned_cols=27 Identities=22% Similarity=0.521 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998644
No 289
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.45 E-value=0.0012 Score=57.52 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998754
No 290
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.44 E-value=0.0015 Score=58.44 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+|.+++|.|++||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998643
No 291
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.41 E-value=0.0016 Score=58.12 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+|.+++|.|++||||||+.+.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999876643
No 292
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.40 E-value=0.0017 Score=56.38 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 014366 216 ETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++.|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3789999999999999999987
No 293
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.40 E-value=0.0017 Score=58.27 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=24.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++|.+++|.|++||||||+.+.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999998643
No 294
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.36 E-value=0.0037 Score=60.50 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=24.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhc
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
-+++|..+.|.||.|+|||||...++.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 578899999999999999999998874
No 295
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.31 E-value=0.016 Score=58.04 Aligned_cols=28 Identities=32% Similarity=0.298 Sum_probs=24.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
-++..++.|+|++||||||+.+.|+.-+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3567899999999999999999987643
No 296
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.30 E-value=0.0013 Score=57.64 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=22.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
.+++|+|++|||||||+..|.+.++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47999999999999999999887654
No 297
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.30 E-value=0.002 Score=56.59 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999987543
No 298
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.25 E-value=0.0017 Score=56.76 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=18.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++.++.|.|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357799999999999999999998544
No 299
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.22 E-value=0.0022 Score=56.26 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
++.|.|++||||||+.+.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987653
No 300
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.22 E-value=0.0018 Score=57.27 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=24.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++++.+++|.|++||||||+.+.|...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998754
No 301
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.18 E-value=0.0022 Score=60.27 Aligned_cols=42 Identities=14% Similarity=0.091 Sum_probs=28.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHcC--CceEEEeccChHHHH-hcCEE
Q 014366 354 ATSALDSRSELLVRQAVDRLLG--HHTVLVIAHHLETVM-MAKRV 395 (426)
Q Consensus 354 pts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~D~i 395 (426)
|||+.+......+.+.+.+... ..+..+..|..+.+. .++++
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l 188 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHI 188 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHH
Confidence 9999999998888888876532 334455667766554 45554
No 302
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.17 E-value=0.0025 Score=56.78 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998754
No 303
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.15 E-value=0.0031 Score=57.16 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++|-++.|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998654
No 304
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.15 E-value=0.0027 Score=56.02 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998765
No 305
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.11 E-value=0.0028 Score=56.30 Aligned_cols=22 Identities=55% Similarity=0.616 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999754
No 306
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.09 E-value=0.0056 Score=52.03 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++++|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999987
No 307
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.06 E-value=0.0037 Score=55.70 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+-+++|+|+.||||||+.+.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
No 308
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.05 E-value=0.0032 Score=57.39 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++.++.|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998644
No 309
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.0033 Score=55.15 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
-.++++|++|+|||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999999864
No 310
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.03 E-value=0.012 Score=57.17 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=31.7
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChHH
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLET 388 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 388 (426)
++.++++||+- .++......+.+.+.+...+..+|++|++...
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 57899999964 57888888888887664445567778887653
No 311
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.02 E-value=0.0033 Score=56.57 Aligned_cols=23 Identities=35% Similarity=0.679 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++|.|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999996544
No 312
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.02 E-value=0.0038 Score=53.89 Aligned_cols=24 Identities=42% Similarity=0.480 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999997643
No 313
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.01 E-value=0.0034 Score=53.26 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 314
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.97 E-value=0.0031 Score=53.58 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999998754
No 315
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.96 E-value=0.004 Score=53.32 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998754
No 316
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.95 E-value=0.004 Score=53.49 Aligned_cols=23 Identities=43% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
No 317
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.95 E-value=0.0034 Score=54.18 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+++|.|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998644
No 318
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.95 E-value=0.035 Score=64.54 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=29.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I 246 (426)
+++|+.+.|.||+|+|||||+..++.......|.+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~V 763 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 763 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCe
Confidence 89999999999999999999988877654444444
No 319
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.94 E-value=0.0039 Score=54.73 Aligned_cols=23 Identities=39% Similarity=0.510 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 320
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.93 E-value=0.0033 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998643
No 321
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.93 E-value=0.004 Score=52.50 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 322
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.93 E-value=0.0041 Score=52.58 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999988753
No 323
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.92 E-value=0.0042 Score=52.93 Aligned_cols=23 Identities=52% Similarity=0.564 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998644
No 324
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.92 E-value=0.0033 Score=57.04 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
No 325
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.91 E-value=0.004 Score=56.09 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++|+|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997544
No 326
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.91 E-value=0.018 Score=62.25 Aligned_cols=23 Identities=35% Similarity=0.639 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+.+.||+|+|||++.+.|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999875
No 327
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.91 E-value=0.0043 Score=58.04 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|||||||++.+.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
No 328
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.90 E-value=0.0037 Score=52.65 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 329
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.90 E-value=0.0039 Score=55.53 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998654
No 330
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.89 E-value=0.0041 Score=58.73 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999854
No 331
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.88 E-value=0.0043 Score=52.48 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 332
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.87 E-value=0.0044 Score=55.44 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
-+++|+|+.||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999865
No 333
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.87 E-value=0.0053 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+.-.++++|++|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999863
No 334
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.86 E-value=0.0045 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 335
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.86 E-value=0.0045 Score=52.63 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 336
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.84 E-value=0.0041 Score=61.42 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++|+|++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
No 337
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.84 E-value=0.013 Score=49.31 Aligned_cols=40 Identities=8% Similarity=0.067 Sum_probs=28.4
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccC
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHH 385 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~ 385 (426)
++.++++||.- .+++..+..+.+.+.+.. .+..+|.+|++
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 35689999975 578888888888887753 23456666654
No 338
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.84 E-value=0.0046 Score=52.42 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 339
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.83 E-value=0.0023 Score=61.06 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=19.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++-+++|.|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998744
No 340
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.83 E-value=0.0046 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999887643
No 341
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.82 E-value=0.0047 Score=52.45 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999987643
No 342
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.81 E-value=0.0045 Score=53.23 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.81 E-value=0.0044 Score=54.29 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.+++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998644
No 344
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.80 E-value=0.0044 Score=52.73 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 345
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.80 E-value=0.0049 Score=52.96 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 346
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.80 E-value=0.0047 Score=57.71 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=22.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++.++.|+|++||||||+.+.|...
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999865
No 347
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.79 E-value=0.0051 Score=53.75 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
.++++|++|+|||||++.+.|-..+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987643
No 348
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.79 E-value=0.0047 Score=57.32 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
-+++|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999997743
No 349
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.75 E-value=0.0044 Score=54.29 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
--.++++|++|+|||||++.+.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999874
No 350
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.75 E-value=0.0047 Score=53.09 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
No 351
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.74 E-value=0.0097 Score=53.09 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
No 352
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.73 E-value=0.0051 Score=56.90 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++-+++|.|++||||||+.+.|+.-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 55689999999999999999997544
No 353
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.73 E-value=0.0046 Score=53.94 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999998764
No 354
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.70 E-value=0.0055 Score=51.96 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++++|+.|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 355
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.67 E-value=0.0058 Score=52.99 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 356
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.66 E-value=0.0058 Score=53.46 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
No 357
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.65 E-value=0.0058 Score=53.56 Aligned_cols=22 Identities=45% Similarity=0.578 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999873
No 358
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.65 E-value=0.0052 Score=53.45 Aligned_cols=23 Identities=39% Similarity=0.319 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999998753
No 359
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.64 E-value=0.0059 Score=53.05 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 360
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.64 E-value=0.0066 Score=52.14 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 361
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.63 E-value=0.0049 Score=58.01 Aligned_cols=23 Identities=43% Similarity=0.509 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999987643
No 362
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.63 E-value=0.0061 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 014366 216 ETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g 237 (426)
=.++++|++|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999975
No 363
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.63 E-value=0.0062 Score=51.58 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999975
No 364
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.61 E-value=0.0095 Score=51.87 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 365
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.58 E-value=0.0058 Score=57.93 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc
Q 014366 215 GETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
.-+++|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999984
No 366
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.56 E-value=0.0067 Score=52.22 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 367
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.54 E-value=0.0062 Score=52.21 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 368
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.53 E-value=0.0069 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998643
No 369
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.52 E-value=0.0042 Score=53.77 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc
Q 014366 215 GETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
.=.++++|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999998874
No 370
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.51 E-value=0.007 Score=52.82 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 371
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.51 E-value=0.0071 Score=52.24 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6899999999999999999863
No 372
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.49 E-value=0.0075 Score=51.96 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|+.|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 373
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.48 E-value=0.007 Score=54.75 Aligned_cols=26 Identities=31% Similarity=0.589 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+|-.+.|.|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998654
No 374
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.47 E-value=0.0072 Score=57.93 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+++|+|++|+|||||++.+.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 375
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.44 E-value=0.0078 Score=54.75 Aligned_cols=23 Identities=35% Similarity=0.722 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++.|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998644
No 376
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.42 E-value=0.00067 Score=73.97 Aligned_cols=45 Identities=24% Similarity=0.425 Sum_probs=36.5
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEeCC
Q 014366 208 LNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHDVQ 254 (426)
Q Consensus 208 isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~i~ 254 (426)
.++.+.+|+.+.|+||+|+|||||+++|++... .+-+.+++.++.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~ 548 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELL 548 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSST
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhh
Confidence 366788999999999999999999999999874 345666665553
No 377
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.40 E-value=0.0071 Score=55.58 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=22.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
..+|.++.+.|++||||||+.+.|...++
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999987664
No 378
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.40 E-value=0.0089 Score=58.16 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
++..+.|+||+|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 566899999999999999999997663
No 379
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.39 E-value=0.0074 Score=52.32 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998864
No 380
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.39 E-value=0.02 Score=58.48 Aligned_cols=77 Identities=22% Similarity=0.244 Sum_probs=55.3
Q ss_pred cccCCCCCCCChHHHHHHHHHH--HhcC---------------CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEE
Q 014366 319 THIGPRGSSLSGGQRQRLAIAR--ALYQ---------------NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLV 381 (426)
Q Consensus 319 t~~~~~g~~LSgGqkQRl~iAR--al~~---------------~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 381 (426)
+........+||||+|-.-+|. |++. .-.+++|||+ +-+|.+..+..++.++++ +--+|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 4445456789999999543333 2221 1257999999 999999999999999987 555677
Q ss_pred eccChHHHHhcCEEEEEe
Q 014366 382 IAHHLETVMMAKRVFLLD 399 (426)
Q Consensus 382 itH~~~~~~~~D~i~vl~ 399 (426)
+|=. ....++|.++.+-
T Consensus 448 atP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 448 AAPE-NISPERGTTYKLV 464 (483)
T ss_dssp EESS-SCCCSSSEEEECC
T ss_pred ECcc-hhhhccCceEEEE
Confidence 7766 2234789988874
No 381
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.38 E-value=0.013 Score=50.48 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++++|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999883
No 382
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.38 E-value=0.008 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998754
No 383
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.37 E-value=0.0084 Score=53.02 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998643
No 384
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.37 E-value=0.0098 Score=51.36 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
..+..+.|.||+|+||||+++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999988765
No 385
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.37 E-value=0.0077 Score=55.89 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++|+|++|+|||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999998743
No 386
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.37 E-value=0.0084 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.210 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998643
No 387
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.36 E-value=0.0061 Score=59.91 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=22.9
Q ss_pred CCCCCCChHHHHHHHHHHHh---cC--CCCEEEeeccC
Q 014366 323 PRGSSLSGGQRQRLAIARAL---YQ--NSSVLILDEAT 355 (426)
Q Consensus 323 ~~g~~LSgGqkQRl~iARal---~~--~p~illlDEpt 355 (426)
++|.++|+||+||.+++|+| ++ +++++++|||+
T Consensus 292 ~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 292 DDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ---------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 55678999999999999999 77 89999999997
No 388
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.35 E-value=0.0084 Score=52.88 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999754
No 389
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.34 E-value=0.0087 Score=52.02 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+.=.++++|++|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3447999999999999999999863
No 390
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.33 E-value=0.0081 Score=54.10 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998644
No 391
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.31 E-value=0.0086 Score=57.47 Aligned_cols=22 Identities=45% Similarity=0.517 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+++|+|++|+|||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999985
No 392
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.31 E-value=0.0082 Score=52.73 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|+.|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999764
No 393
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.31 E-value=0.012 Score=50.93 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999998853
No 394
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.31 E-value=0.0089 Score=52.78 Aligned_cols=21 Identities=52% Similarity=0.718 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
+++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999986
No 395
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.29 E-value=0.0092 Score=51.54 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998875
No 396
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.29 E-value=0.045 Score=52.34 Aligned_cols=43 Identities=14% Similarity=0.336 Sum_probs=31.6
Q ss_pred CCCEEEeeccCCCCC-HHHHHHHHHHHHHHcCCceEEEeccChHH
Q 014366 345 NSSVLILDEATSALD-SRSELLVRQAVDRLLGHHTVLVIAHHLET 388 (426)
Q Consensus 345 ~p~illlDEpts~LD-~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 388 (426)
+++++++||.-. +. ......+.+.+.+...+..+|++|++...
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 789999999843 44 66667777777766555678888887653
No 397
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.29 E-value=0.0073 Score=54.40 Aligned_cols=25 Identities=40% Similarity=0.515 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+.+++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
No 398
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.29 E-value=0.0094 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 399
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.29 E-value=0.0084 Score=52.56 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++++|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 689999999999999999986
No 400
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.28 E-value=0.012 Score=51.42 Aligned_cols=23 Identities=39% Similarity=0.359 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 401
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.27 E-value=0.0051 Score=55.31 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
-.++++|++|+|||||++.+.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999864
No 402
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.25 E-value=0.013 Score=52.61 Aligned_cols=34 Identities=32% Similarity=0.351 Sum_probs=27.6
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++..-+.+ .|..+.|+||+|||||||...|+.-
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 566665554 6789999999999999999888754
No 403
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.25 E-value=0.01 Score=52.47 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 404
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.24 E-value=0.0099 Score=54.00 Aligned_cols=29 Identities=38% Similarity=0.448 Sum_probs=24.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
-+|.++.+.|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 36889999999999999999999876643
No 405
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.24 E-value=0.011 Score=53.99 Aligned_cols=26 Identities=38% Similarity=0.657 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+..+.|.|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
No 406
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.24 E-value=0.0098 Score=55.57 Aligned_cols=23 Identities=35% Similarity=0.327 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.++|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999854
No 407
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.23 E-value=0.024 Score=53.77 Aligned_cols=42 Identities=14% Similarity=0.291 Sum_probs=30.1
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChH
Q 014366 345 NSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLE 387 (426)
Q Consensus 345 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 387 (426)
++.++++||.- .++......+.+.+.+...+..+|++|++..
T Consensus 107 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECcc-cCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 48899999964 4666666777777776545556777887764
No 408
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.22 E-value=0.0088 Score=52.93 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 78999999999999999998743
No 409
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.22 E-value=0.0096 Score=58.03 Aligned_cols=25 Identities=20% Similarity=0.539 Sum_probs=22.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999987664
No 410
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.21 E-value=0.0094 Score=52.42 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 411
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.21 E-value=0.01 Score=52.03 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 412
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.21 E-value=0.0092 Score=56.24 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|||||||++.++|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 413
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.20 E-value=0.015 Score=51.96 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 414
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.20 E-value=0.0092 Score=52.30 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999998643
No 415
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.18 E-value=0.0054 Score=62.29 Aligned_cols=42 Identities=31% Similarity=0.417 Sum_probs=32.0
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLRLYDPLSGCI 246 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I 246 (426)
+++.+ +.+-+|++++|+|++|+|||||++.|.+......|.+
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 44444 5677999999999999999999999987654333333
No 416
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.18 E-value=0.01 Score=53.90 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999874
No 417
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.16 E-value=0.01 Score=51.99 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++++|++|+|||||++.+.+
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999987
No 418
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.14 E-value=0.011 Score=55.47 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=23.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCccE
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGC 245 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p~~G~ 245 (426)
-.++++|.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 489999999999999999999876544443
No 419
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.14 E-value=0.011 Score=54.57 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+|.++++.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987664
No 420
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.14 E-value=0.011 Score=52.18 Aligned_cols=24 Identities=25% Similarity=0.492 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
.++++|++|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 799999999999999999988544
No 421
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.14 E-value=0.011 Score=51.91 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999874
No 422
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.13 E-value=0.01 Score=51.66 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 014366 216 ETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g 237 (426)
=.++++|++|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999999985
No 423
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.12 E-value=0.011 Score=52.51 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999854
No 424
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.12 E-value=0.01 Score=53.36 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
-.++++|++|+|||||++.|++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 378999999999999999888653
No 425
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.11 E-value=0.011 Score=51.94 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
No 426
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.11 E-value=0.011 Score=51.65 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 427
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.10 E-value=0.0083 Score=52.48 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 428
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.10 E-value=0.011 Score=51.44 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 429
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.09 E-value=0.012 Score=53.63 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=26.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
++|.++.+-|++||||||+.+.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999987765
No 430
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.08 E-value=0.011 Score=52.09 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
=.++++|+.|+|||||++.+.+-.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 378999999999999999998643
No 431
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.07 E-value=0.013 Score=56.52 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+..++|+||+|||||||...|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 432
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.07 E-value=0.014 Score=50.33 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
=.++++|++|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998864
No 433
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.07 E-value=0.011 Score=55.91 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 014366 216 ETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++.|.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 434
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.06 E-value=0.012 Score=52.34 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
=.++++|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999999854
No 435
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.06 E-value=0.013 Score=53.30 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+|.++.+-|++||||||.++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
No 436
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.05 E-value=0.0097 Score=51.65 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 437
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.05 E-value=0.0092 Score=51.37 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998863
No 438
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.05 E-value=0.011 Score=52.49 Aligned_cols=22 Identities=41% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 439
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.03 E-value=0.011 Score=52.61 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7999999999999999999874
No 440
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.02 E-value=0.013 Score=52.36 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
No 441
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.99 E-value=0.013 Score=51.56 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
=.++++|++|+|||||++.+.+-
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999998853
No 442
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.99 E-value=0.013 Score=51.31 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++++|++|+|||||++.+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 689999999999999988875
No 443
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.96 E-value=0.012 Score=56.24 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++|+|+.|||||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999875
No 444
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.94 E-value=0.013 Score=52.64 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 014366 217 TVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 445
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.93 E-value=0.014 Score=53.52 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=24.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
.+|.++.+.|++||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987654
No 446
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.91 E-value=0.013 Score=54.75 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.+.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67999999999999999999843
No 447
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.91 E-value=0.013 Score=53.87 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+|.+++|.|+.||||||+.+.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997663
No 448
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.90 E-value=0.018 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
-.++++|++|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998643
No 449
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.90 E-value=0.012 Score=50.67 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=23.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
..+..+.|.||+|+||||+++.++....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999987654
No 450
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.87 E-value=0.013 Score=54.90 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999754
No 451
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.85 E-value=0.0092 Score=51.63 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=9.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988754
No 452
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.84 E-value=0.014 Score=56.36 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=22.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
..+.|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999997653
No 453
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.83 E-value=0.013 Score=51.82 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
No 454
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.79 E-value=0.033 Score=60.99 Aligned_cols=27 Identities=33% Similarity=0.461 Sum_probs=23.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
..+.|.||+|+|||++++.|.......
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~ 615 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDT 615 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 478999999999999999999877543
No 455
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.78 E-value=0.013 Score=51.57 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc
Q 014366 215 GETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
.=.++++|++|+|||||++.+.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34799999999999999999875
No 456
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.76 E-value=0.013 Score=55.25 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++++|++|+|||||++.|.|-.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999864
No 457
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.75 E-value=0.017 Score=52.22 Aligned_cols=22 Identities=50% Similarity=0.712 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
No 458
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.74 E-value=0.016 Score=55.77 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=24.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhc
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
-+++|+++.|.||+|||||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987764
No 459
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.74 E-value=0.13 Score=60.65 Aligned_cols=34 Identities=32% Similarity=0.466 Sum_probs=29.9
Q ss_pred Ccceeee--EEEeCCCEEEEECCCCCcHHHHHHHHh
Q 014366 203 LVLDQLN--LHIRAGETVALIGPSGGGKSTLAKLLL 236 (426)
Q Consensus 203 ~~l~~is--l~i~~Ge~~~ivG~sGsGKSTLl~ll~ 236 (426)
+.|+++. .-+++|+.+.+.||+|||||||...+.
T Consensus 1067 ~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1067 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 4677776 569999999999999999999998876
No 460
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.72 E-value=0.015 Score=50.89 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 461
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.72 E-value=0.011 Score=55.25 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=24.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
+++.+++|.|+.||||||+.+.|...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999987763
No 462
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.72 E-value=0.22 Score=50.86 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=26.6
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
-|+.+.--+++|+.+.|.|++|+|||||+.-++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 3444433589999999999999999999866653
No 463
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.71 E-value=0.022 Score=51.93 Aligned_cols=24 Identities=42% Similarity=0.624 Sum_probs=21.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHH
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLL 235 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll 235 (426)
+++|+.+.|.|++|+|||||+.-+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHH
Confidence 789999999999999999997544
No 464
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.69 E-value=0.013 Score=53.50 Aligned_cols=29 Identities=21% Similarity=0.494 Sum_probs=24.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 211 HIRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 211 ~i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
..++..++.|+||.||||+|..+.|+.-|
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566789999999999999999998655
No 465
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.64 E-value=0.072 Score=51.47 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=29.7
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccChH
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHHLE 387 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 387 (426)
.+++|+|+||+= .|.......+.+.+++-..+..+|++|++++
T Consensus 107 ~~~kvviIdead-~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 107 GGAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SSCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCcEEEEECchh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 367999999974 4666666666666654333456777888875
No 466
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.60 E-value=0.016 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++|+|++|+|||||++-+++-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 78999999999999998887643
No 467
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.54 E-value=0.027 Score=49.42 Aligned_cols=33 Identities=24% Similarity=0.166 Sum_probs=25.1
Q ss_pred cceeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 014366 204 VLDQLNLHIRAGETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 204 ~l~~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g 237 (426)
.++..-+. -.|.-+.|.|+||+||||+...+..
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34444444 4688999999999999999987753
No 468
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.54 E-value=0.005 Score=57.33 Aligned_cols=30 Identities=43% Similarity=0.649 Sum_probs=23.6
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 207 QLNLHIRAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 207 ~isl~i~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+.+...++| +.|.||+|+||||+++.+++.
T Consensus 38 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 38 NLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 334444455 889999999999999999874
No 469
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.53 E-value=0.019 Score=55.10 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
...+.|+||+|||||||...|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998765
No 470
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.51 E-value=0.0088 Score=53.57 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988853
No 471
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.46 E-value=0.019 Score=50.94 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 6899999999999999998764
No 472
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.45 E-value=0.019 Score=51.11 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 014366 216 ETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g 237 (426)
=.++++|++|+|||||++.+.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3789999999999999988874
No 473
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.41 E-value=0.013 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 014366 216 ETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g 237 (426)
=.++++|++|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3799999999999999999864
No 474
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.38 E-value=0.022 Score=51.34 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 475
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.35 E-value=0.022 Score=51.13 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7999999999999999998764
No 476
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.33 E-value=0.0098 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=4.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988764
No 477
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.32 E-value=0.0053 Score=61.95 Aligned_cols=37 Identities=27% Similarity=0.267 Sum_probs=29.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEcCEe
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDPLSGCILVDDHD 252 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p~~G~I~~~g~~ 252 (426)
.+++++|++|+||||++..|++.+.....++.+-..|
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 5899999999999999999999876544456554444
No 478
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.16 E-value=0.025 Score=54.15 Aligned_cols=26 Identities=35% Similarity=0.714 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++-+++++|++|+|||||++.+.+-+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34579999999999999999987653
No 479
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.10 E-value=0.024 Score=50.36 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
.++++|++|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998853
No 480
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.03 E-value=0.24 Score=45.43 Aligned_cols=51 Identities=27% Similarity=0.247 Sum_probs=38.9
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCceEEEeccC-----------hHHHHhcCEEEEEe
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLLGHHTVLVIAHH-----------LETVMMAKRVFLLD 399 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~-----------~~~~~~~D~i~vl~ 399 (426)
.+.+++++||.--..| ..++.+.+.+ .+..||+..++ .+.+..||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~--~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN--AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH--TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh--CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999988765 4555555554 47899999999 34567899998874
No 481
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.01 E-value=0.023 Score=50.19 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=33.3
Q ss_pred CCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCceEEEeccChH-----------HHHhcCEEEEEeC
Q 014366 344 QNSSVLILDEATSALDSRSELLVRQAVDRLL-GHHTVLVIAHHLE-----------TVMMAKRVFLLDN 400 (426)
Q Consensus 344 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~-----------~~~~~D~i~vl~~ 400 (426)
.+++++++||.-- +|++.. +.++.+. .+..|++..++.+ .+..||.|..|+.
T Consensus 75 ~~~dvviIDE~Q~-~~~~~~----~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPSLF----EVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TTEEEEEECCGGG-SCTTHH----HHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCCEEEEECccc-CCHHHH----HHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 3678999999854 655433 3333332 3677888777433 4457999988753
No 482
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.00 E-value=0.025 Score=56.27 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.+++|+||+|||||||...|+.-+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999988655
No 483
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.94 E-value=0.031 Score=50.34 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
|.++++=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999987664
No 484
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.92 E-value=0.032 Score=50.34 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++.|+||.||||+|..+.|+.-|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998655
No 485
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.85 E-value=0.035 Score=52.60 Aligned_cols=27 Identities=30% Similarity=0.212 Sum_probs=22.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
-.++++|.+|+|||||++.|.|-....
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~~ 147 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIAK 147 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred ceEEEEecCCCchHHHHHHHhcCceee
Confidence 478999999999999999999865433
No 486
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=93.66 E-value=0.032 Score=54.98 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
++..++++|++|+|||||++.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5678999999999999999999986
No 487
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.48 E-value=0.19 Score=50.50 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
+..+++++|++|+||||+..-|+..+.-
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999888866543
No 488
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.48 E-value=0.03 Score=54.75 Aligned_cols=25 Identities=32% Similarity=0.262 Sum_probs=22.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Q 014366 216 ETVALIGPSGGGKSTLAKLLLRLYD 240 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g~~~ 240 (426)
-+++|+|+.|+|||||++.|++.+.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999987653
No 489
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.46 E-value=0.034 Score=55.96 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+++|+|++|+|||||++.|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999874
No 490
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.43 E-value=0.027 Score=50.55 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCCEEEeeccCC-----CCCHHHHHHHHHHHHHH
Q 014366 335 RLAIARALYQNSSVLILDEATS-----ALDSRSELLVRQAVDRL 373 (426)
Q Consensus 335 Rl~iARal~~~p~illlDEpts-----~LD~~~~~~i~~~l~~~ 373 (426)
.-.|++.+..+|.....++|+. .+|+...+.+.+.+++.
T Consensus 166 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
T 3gj0_A 166 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVA 209 (221)
T ss_dssp HHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhh
Confidence 3467778888888777777665 67777777777666554
No 491
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=93.41 E-value=0.038 Score=55.05 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
.++|+|.+++|||||++.|.|--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 492
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.33 E-value=0.024 Score=57.40 Aligned_cols=35 Identities=40% Similarity=0.613 Sum_probs=27.3
Q ss_pred eeEEEeCCC--EEEEECCCCCcHHHHHHHHhcCCCCC
Q 014366 208 LNLHIRAGE--TVALIGPSGGGKSTLAKLLLRLYDPL 242 (426)
Q Consensus 208 isl~i~~Ge--~~~ivG~sGsGKSTLl~ll~g~~~p~ 242 (426)
+.-.++.|. .+.|.||+|+||||+++.|+......
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 333445555 48999999999999999999887554
No 493
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.29 E-value=0.033 Score=54.82 Aligned_cols=26 Identities=27% Similarity=0.531 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
++..++++|++|+|||||++.|.|-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 57889999999999999999999863
No 494
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=92.40 E-value=0.015 Score=51.44 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 014366 216 ETVALIGPSGGGKSTLAKLLLR 237 (426)
Q Consensus 216 e~~~ivG~sGsGKSTLl~ll~g 237 (426)
=.++++|++|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4799999999999999988764
No 495
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.27 E-value=0.062 Score=49.79 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLYDP 241 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~~p 241 (426)
.+.-+.|.||+|+|||++++.+......
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 4567899999999999999999987653
No 496
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.25 E-value=0.034 Score=50.25 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=24.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 212 IRAGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 212 i~~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+++...+.+.||.|+||||+...|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 6666689999999999999999998875
No 497
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.20 E-value=0.042 Score=53.67 Aligned_cols=25 Identities=48% Similarity=0.800 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 215 GETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 215 Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+..+.|.||+|+||||+.+.|+..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4467899999999999999999876
No 498
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.17 E-value=0.047 Score=51.84 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 014366 214 AGETVALIGPSGGGKSTLAKLLLRLY 239 (426)
Q Consensus 214 ~Ge~~~ivG~sGsGKSTLl~ll~g~~ 239 (426)
+...+.|.||+|+|||+|.+.++..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33568888999999999999999765
No 499
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.12 E-value=0.042 Score=51.19 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcC
Q 014366 213 RAGETVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 213 ~~Ge~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
++...+.|.||+|+||||+++.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457899999999999999999875
No 500
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.11 E-value=0.079 Score=53.28 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 014366 217 TVALIGPSGGGKSTLAKLLLRL 238 (426)
Q Consensus 217 ~~~ivG~sGsGKSTLl~ll~g~ 238 (426)
+++|+|.+++|||||++.+.|-
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~ 24 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKK 24 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
Done!