Query 014367
Match_columns 426
No_of_seqs 204 out of 495
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:26:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03124 EXS: EXS family; Int 100.0 1.6E-84 3.5E-89 657.1 26.2 331 59-396 2-345 (345)
2 KOG1162 Predicted small molecu 100.0 8.8E-82 1.9E-86 663.0 28.4 380 16-413 223-614 (617)
3 COG5409 EXS domain-containing 100.0 1E-61 2.2E-66 474.1 18.0 319 60-398 38-370 (384)
4 cd07347 harmonin_N_like N-term 25.7 55 0.0012 26.5 2.2 29 243-271 24-52 (78)
5 PF11753 DUF3310: Protein of u 23.4 42 0.00092 25.6 1.1 12 256-267 29-40 (60)
6 KOG4116 Ubiquinol cytochrome c 21.8 56 0.0012 27.0 1.5 33 359-391 25-58 (90)
7 PF11120 DUF2636: Protein of u 21.5 1.5E+02 0.0033 23.0 3.7 35 141-175 7-41 (62)
8 PF11952 DUF3469: Protein of u 15.1 50 0.0011 27.2 -0.2 22 187-208 33-54 (87)
9 PF04133 Vps55: Vacuolar prote 14.3 3.9E+02 0.0085 23.3 5.2 73 234-315 36-119 (120)
10 PF15269 zf-C2H2_7: Zinc-finge 13.6 45 0.00097 24.3 -0.7 15 254-268 31-45 (54)
No 1
>PF03124 EXS: EXS family; InterPro: IPR004342 The EXS domain is named after ERD1/XPR1/SYG1 and proteins containing this motif include the C-terminal of the SYG1 G-protein associated signal transduction protein from Saccharomyces cerevisiae, and sequences that are thought to be Murine leukemia virus (MLV) receptors (XPR1. The N-terminal of these proteins often have an SPX domain (IPR004331 from INTERPRO) []. While the N-terminal is thought to be involved in signal transduction, the role of the C-terminal is not known. This region of similarity contains several predicted transmembrane helices. This family also includes the ERD1 (ERD: ER retention defective) S. cerevisiae proteins. ERD1 proteins are involved in the localization of endogenous endoplasmic reticulum (ER) proteins. Erd1 null mutants secrete such proteins even though they possess the C-terminal HDEL ER lumen localization label sequence. In addition, null mutants also exhibit defects in the Golgi-dependent processing of several glycoproteins, which led to the suggestion that the sorting of luminal ER proteins actually occurs in the Golgi, with subsequent return of these proteins to the ER via `salvage' vesicles [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=1.6e-84 Score=657.10 Aligned_cols=331 Identities=43% Similarity=0.756 Sum_probs=291.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcCCCCeeeEeecCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc---
Q 014367 59 FLYYNPLLLVTMMVWLWGVNLWVFSQGSANYAKIFDLDQ-NHLTHHEIWKCSIWMTIIVPTSMTAYLYLYSHGEVSL--- 134 (426)
Q Consensus 59 ~l~y~~~~Li~l~~~l~g~nl~vw~~~~INy~~IFe~~~-~~l~~~~~~~~a~~ltii~~~s~~~~l~~~~~g~~~~--- 134 (426)
++.||+.+++.+++|+||+|+++|+++||||++|||+|+ ++++++|+++.++.+++++++++..++.....+....
T Consensus 2 ~~~~R~~~L~~l~~~l~~~nl~v~~~~~Iny~~If~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~l~~~~~~~~~~~~~ 81 (345)
T PF03124_consen 2 PPPFRGLLLLILGLWLWGINLYVWSRYRINYVFIFELDPRNSLSYRQLFELASFLTIIWLLCFLIYLASVSPSIISFANW 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHhcCCcccCCcHHHHHhhhHHHHHHHHHHHHHHHHHHcCCcccccch
Confidence 467999999999999999999999999999999999994 6789999999999999999888877766544332211
Q ss_pred --hhhhhHHHHHHHHHHHhhcccccchhhHHHHHHHHhHhh-cCCceeccchhhhHHhhhhHHHhhcccceeEEEEeccc
Q 014367 135 --AASQPVLLYIAIAIVLIFPFDIFYLSSRYFFLRTLWRIA-LPLQAITFPDFFLADILTSMAKVFSDLERSICRMVHRQ 211 (426)
Q Consensus 135 --~~~~Pl~l~~~~~~~l~~P~~i~~~~~R~~llr~l~Ril-~pf~~V~F~DfflaDqLtSl~~~l~Dl~~~~C~y~~~~ 211 (426)
.+..|+++++++++++++|++++++++|+|++++++|++ +|+.+|+|+|||+||||||++|+++|+++++|+|.++.
T Consensus 82 ~~~~~~Pll~~~~~~~~l~~P~~~~~~~~R~~~~~~l~ril~~~~~~v~f~d~~laD~LtS~~~~l~D~~~~~c~~~~~~ 161 (345)
T PF03124_consen 82 YFVEYIPLLLLLILLLLLFFPFNIFYRSSRRWFLRTLKRILLAPFYPVRFRDFFLADQLTSLSKVLGDLEFTICYYFSGS 161 (345)
T ss_pred hhHHHhhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc
Confidence 236899999999999999999999999999999999998 68999999999999999999999999999999997632
Q ss_pred ccccccccCCCccCCccchh-hhHhhhhHHHHHHHHHHHhhhcCCc-chhhhHHHHhhhHHHHHHHHhhhhccCCCCccc
Q 014367 212 VATIAWFEADSVCGSHSIAI-PLVLVFPYLCRLLQCLRQYKDTKEK-TTLLNALKYSTAVPVIFLSALKYHVFPHKWSSV 289 (426)
Q Consensus 212 ~~~~~w~~~~~~c~~~~~~~-p~~~~lP~~iR~~QClRry~dt~~~-~hL~Na~KY~sa~~vi~~s~l~~~~~~~~~~~~ 289 (426)
+.++++.|++++... |+++++|++||++||+|||+||+++ +||.||+||++|+++++++++.....++.+...
T Consensus 162 -----~~~~~~~c~~~~~~~~~~~~~lP~~iR~~QClrry~~~~~~~~hL~Na~KY~~~~~v~~~~~~~~~~~~~~~~~~ 236 (345)
T PF03124_consen 162 -----FTSPSNQCGSSSWYIDPIVASLPYWIRFLQCLRRYRDTGDRFPHLFNALKYSSSIPVIILSALYRFYPSSDSSIW 236 (345)
T ss_pred -----ccCCCCcCccccHhHHhHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 225678898876654 9999999999999999999999999 999999999999999999988655443333334
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhcCCCCCcccccccCCCCcccccccCccchhHHHHhhhhHHHHHhhhhcccc----cc
Q 014367 290 YRPLWLLSSVINSLYSFYWDVTRDWDLSGFSRIFKFNKPSFFSNLLYGRQWIYFWVIGSNLILRCTWTYKLSAH----LR 365 (426)
Q Consensus 290 ~~~lWi~~~~inS~Ys~~WDv~mDWgL~~~~~~~~~~~~~LR~~l~y~~~~~YY~Aiv~n~iLRf~W~~~l~~~----~~ 365 (426)
.+.+|++++++||+||++||++|||||++.++ +.+++.||++++|++|++||+||+.|+++||+|++++++. ..
T Consensus 237 ~~~~w~~~~~i~s~Ys~~WDv~~DWgL~~~~~--~~~~~~LR~~l~~~~~~~Yy~ai~~n~ilRf~W~~~~~~~~~~~~~ 314 (345)
T PF03124_consen 237 LFILWIIFALINSLYSFYWDVKMDWGLFQPKK--KSKNWLLRRRLLYPRKWFYYFAIILNFILRFAWILTLSPPHFSHID 314 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCcc--ccCCCCCccccccCCcchhhhHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 68999999999999999999999999987542 2367889999999999999999999999999999998763 33
Q ss_pred hhhHHHHHHHHHHHHhhhcceeeeeehhhhh
Q 014367 366 HNHLTVFAVAVLEMLRRFQWIFFRVESEWNK 396 (426)
Q Consensus 366 ~~~~~~f~~a~lEI~RR~iWnffRvEnEhi~ 396 (426)
+++...++++++||+||++||||||||||+|
T Consensus 315 ~~~~~~~~~~~lEi~RR~iWnffRlE~Ehin 345 (345)
T PF03124_consen 315 NSEIFIFILAILEIFRRFIWNFFRLENEHIN 345 (345)
T ss_pred hHHHHHHHHHHHHHHHHHhhheeeeeHhhcC
Confidence 5678889999999999999999999999986
No 2
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.8e-82 Score=663.02 Aligned_cols=380 Identities=34% Similarity=0.585 Sum_probs=316.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCeeeEeec
Q 014367 16 SPIFLWRFKVMLFLIWGIGCCKIGWESVLRMGVDLRDLFLYEAFLYYNPLLLVTMMVWLWGVNLWVFSQGSANYAKIFDL 95 (426)
Q Consensus 16 ~~~~~~~f~~glf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~y~~~~Li~l~~~l~g~nl~vw~~~~INy~~IFe~ 95 (426)
.|.|.=+|.+|.+.|-++++..+......... + .+..+..++++|| ++++.++++++|+|+++|+++||||++|||+
T Consensus 223 ~~~~~~~f~~g~~~~l~val~~~~~~~~~~~~-~-~~~~~~~~~~l~~-~~~v~l~~fl~~~niy~W~~~rVNy~fIf~~ 299 (617)
T KOG1162|consen 223 RPTFSTGFFVGCGIGLSVALVALIYLRNILQS-E-QRFYMETMFPLYG-FGLVVLHKFLYNVNIYEWSRTRVNYKFIFEF 299 (617)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-c-chhHHHHHHHHHH-HHHHHHHHHHhcCchHHHHHhcCCceeeecC
Confidence 34555667777777766666555444444333 3 4455566778888 8888889999999999999999999999999
Q ss_pred CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhhhhHHHHHHHHHHHhhcccccchhhHHHHHHHHhHhh-
Q 014367 96 DQ-NHLTHHEIWKCSIWMTIIVPTSMTAYLYLYSHGEVSLAASQPVLLYIAIAIVLIFPFDIFYLSSRYFFLRTLWRIA- 173 (426)
Q Consensus 96 ~~-~~l~~~~~~~~a~~ltii~~~s~~~~l~~~~~g~~~~~~~~Pl~l~~~~~~~l~~P~~i~~~~~R~~llr~l~Ril- 173 (426)
|+ +++.+++++.+++..++++.++++.+++....+ ..++..|+.+++++++++++|++++|+++|+|+++++.||+
T Consensus 300 ~~~~~l~~~~~l~i~~~~~~~~~l~~l~~l~~~~~~--~~~~~~Pl~ll~~~~~~L~~Pf~~fY~sSRf~ll~~l~rvi~ 377 (617)
T KOG1162|consen 300 DQRTELGYRDILLIHNTNGILEFLPVLKNLDMSMSG--QTTELSPLILLLLFFFLLVCPFNTFYRSSRFWLLKRLFRVLS 377 (617)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHhccccCC--CCcccchHHHHHHHHheeeccchhhhHhhHHHHHHHHHHHHh
Confidence 96 689999999999999999988888887644332 22667899999999999999999999999999999999998
Q ss_pred cCCceeccchhhhHHhhhhHHHhhcccceeEEEEecccccccccccCC-CccC-CccchhhhHhhhhHHHHHHHHHHHhh
Q 014367 174 LPLQAITFPDFFLADILTSMAKVFSDLERSICRMVHRQVATIAWFEAD-SVCG-SHSIAIPLVLVFPYLCRLLQCLRQYK 251 (426)
Q Consensus 174 ~pf~~V~F~DfflaDqLtSl~~~l~Dl~~~~C~y~~~~~~~~~w~~~~-~~c~-~~~~~~p~~~~lP~~iR~~QClRry~ 251 (426)
+|+++|.|.|||+|||+||++++++|+++++|+|..+ +|..++ ..|. +++...++++++|+++|++||+|||+
T Consensus 378 spl~~V~~~DFfl~Dql~S~v~a~~~l~~~~C~y~~~-----~~~~~~~~~~~~~~~~~~~iva~lP~~~RfLQClRR~~ 452 (617)
T KOG1162|consen 378 SPLYKVLFVDFFLADQLTSLVLALRDLEFFICYYGTG-----DFQARRTCYCKDDYIEFQSIVAVLPYWFRFLQCLRRYR 452 (617)
T ss_pred ccceeeccccccHHHHHHHHHHHHHhHHHhheeeccc-----ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999643 565554 2233 34556789999999999999999999
Q ss_pred hcCCcchhhhHHHHhhhHHHHHHHHhhhhccCCCCccchhhHHHHHHHHHHHHHHhhhhhhcCCCCCcccccccCCCCcc
Q 014367 252 DTKEKTTLLNALKYSTAVPVIFLSALKYHVFPHKWSSVYRPLWLLSSVINSLYSFYWDVTRDWDLSGFSRIFKFNKPSFF 331 (426)
Q Consensus 252 dt~~~~hL~Na~KY~sa~~vi~~s~l~~~~~~~~~~~~~~~lWi~~~~inS~Ys~~WDv~mDWgL~~~~~~~~~~~~~LR 331 (426)
|+++.+||+||+||+++++++.++++. +..+++ ..++.+|++++.+||+|+++||++|||||++..+ + |+||
T Consensus 453 d~~~~~hL~NAlKY~~~i~~v~~~~~y-~~~~~~--~~~~~l~~~~s~vaS~y~~~WDvv~DWgLl~~~~----~-~~lR 524 (617)
T KOG1162|consen 453 DEKAFPHLLNALKYSTTILAVMLTTLY-RILPGS--SLWFALWILSSKVASLYTTYWDVVMDWGLLNRKS----K-PWLR 524 (617)
T ss_pred hccchHhHHHHHHHHHHHHHHHHHHHH-HHcCCc--chHHHHHHHHHHHHHHHHHHHHHheecccccccC----c-hhhH
Confidence 998889999999999999999888764 333322 3578999999999999999999999999975332 3 8999
Q ss_pred cccccCccchhHHHHhhhhHHHHHhhhhcccccc--h-hhHHHHHHHHHHHHhhhcceeeeeehhh-hhhc----ccccC
Q 014367 332 SNLLYGRQWIYFWVIGSNLILRCTWTYKLSAHLR--H-NHLTVFAVAVLEMLRRFQWIFFRVESEW-NKIT----KSSFQ 403 (426)
Q Consensus 332 ~~l~y~~~~~YY~Aiv~n~iLRf~W~~~l~~~~~--~-~~~~~f~~a~lEI~RR~iWnffRvEnEh-i~~~----~~~~~ 403 (426)
++++|++|++||+||+.|++||++|+++.+.+.. + .+..++++|.+||+|||+|||||||||| +|++ .+.+|
T Consensus 525 d~l~~p~k~vYy~aiv~N~vLR~aW~~~~i~~~~~~~~~~~~~~i~a~LEIiRRfiWnfFRLEnEhlnN~g~fRa~~~v~ 604 (617)
T KOG1162|consen 525 DNLLYPQKWVYYSAIVLNFVLRFAWFFKTILVFHEEFLSDSMVFIMALLEIIRRFIWNFFRLENEHLNNVGKFRAFRDVP 604 (617)
T ss_pred HHhcccchheehhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhccccccCC
Confidence 9999999999999999999999999888665432 2 5678899999999999999999999999 6676 37999
Q ss_pred CCCCcccchh
Q 014367 404 LPTSEMLKED 413 (426)
Q Consensus 404 l~~~~~~~~~ 413 (426)
+|++..|++|
T Consensus 605 l~~~~~~~~d 614 (617)
T KOG1162|consen 605 LPFSYMDESD 614 (617)
T ss_pred chhhhccccc
Confidence 9966655544
No 3
>COG5409 EXS domain-containing protein [Signal transduction mechanisms]
Probab=100.00 E-value=1e-61 Score=474.14 Aligned_cols=319 Identities=31% Similarity=0.549 Sum_probs=250.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCCCeeeEeecCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHhh-hcCC---c
Q 014367 60 LYYNPLLLVTMMVWLWGVNLWVFSQGSANYAKIFDLDQNHLTHHEI---WKCSIWMTIIVPTSMTAYLYLY-SHGE---V 132 (426)
Q Consensus 60 l~y~~~~Li~l~~~l~g~nl~vw~~~~INy~~IFe~~~~~l~~~~~---~~~a~~ltii~~~s~~~~l~~~-~~g~---~ 132 (426)
..+++..++.+...++++|+++|+|.+|||++||+++..+.+-++. +..+..-...+.+++.. +.. .+|+ .
T Consensus 38 ~lw~~~~l~~~~~~lf~v~~~i~~r~~inyr~i~~~e~~~~~a~~~~~dfh~~~i~~~~~~~slfi--Fl~~v~g~~~~l 115 (384)
T COG5409 38 ALWGGWILVFFLAFLFDVSCYILTRTPINYRFIFLFEQLSSTARNFNLDFHRIIIPFHFFTTSLFI--FLNAVEGLKFIL 115 (384)
T ss_pred HHHhHHHHHHHHHHHhcCceeeEEeccccchhhhhHhHhhhhhcccchhhHHHhhhHHHHHHHHHH--HHHHhhccccce
Confidence 4678888888999999999999999999999999998643322210 00011111222222221 221 2222 2
Q ss_pred cchhhhhHHHHHHHHHHHhhcccccchhhHHHHHHHHhHhh-cCCceeccchhhhHHhhhhHHHhhcccceeEEEEeccc
Q 014367 133 SLAASQPVLLYIAIAIVLIFPFDIFYLSSRYFFLRTLWRIA-LPLQAITFPDFFLADILTSMAKVFSDLERSICRMVHRQ 211 (426)
Q Consensus 133 ~~~~~~Pl~l~~~~~~~l~~P~~i~~~~~R~~llr~l~Ril-~pf~~V~F~DfflaDqLtSl~~~l~Dl~~~~C~y~~~~ 211 (426)
.....+|+++.+....++++|+++.|+.+|+|++.++.|++ .|..+|+|+||++||+++|++++++|+..+.|.|..
T Consensus 116 ~~~~~~P~l~v~~vf~~ll~Pf~ii~y~sRr~Li~sliRv~l~~~~~v~f~dF~f~di~~SlTya~gdi~~FfCv~~~-- 193 (384)
T COG5409 116 LFVYFLPLLQVGTVFWFLLKPFQIIYYWSRRYLIESLIRVFLFGYSLVRFTDFFFGDILISLTYALGDIYIFFCVYSL-- 193 (384)
T ss_pred ehhhhccHHHHHHHHHHhhcccceeeecchhhHHHHHHHHHHhccceeeeeeeehhhHHHHHHHhhhhhhhHHHHHhh--
Confidence 33456899998889999999999999999999999999987 799999999999999999999999999999999864
Q ss_pred ccccccccCCCccC-CccchhhhHhhhhHHHHHHHHHHHhhhcCCc-chhhhHHHHhhhHHHHHHHHhhhhccCCCCccc
Q 014367 212 VATIAWFEADSVCG-SHSIAIPLVLVFPYLCRLLQCLRQYKDTKEK-TTLLNALKYSTAVPVIFLSALKYHVFPHKWSSV 289 (426)
Q Consensus 212 ~~~~~w~~~~~~c~-~~~~~~p~~~~lP~~iR~~QClRry~dt~~~-~hL~Na~KY~sa~~vi~~s~l~~~~~~~~~~~~ 289 (426)
.|.++ -|. +|+...|+++++|.++|++||+|||+|+++. +||+||+||++++|+..+.++ +|..+.. ..
T Consensus 194 ----~~~~p--Lc~sshs~~~g~~~~lP~ivR~lQCLRry~ds~~~fphLlNALKYs~~i~v~~~~~~-~r~~~~~--~~ 264 (384)
T COG5409 194 ----LFREP--LCKSSHSDLSGLAALLPVIVRFLQCLRRYRDSLHEFPHLLNALKYSLNIPVLFCLWL-YRVYEGE--ER 264 (384)
T ss_pred ----hcccc--ccccCCcchHhHHHhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHH-HHhccCc--ce
Confidence 33344 465 4788899999999999999999999999776 899999999999999887765 5554322 34
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhcCCCCCcccccccCCCCcccccccCccchhHHHHhhhhHHHHHhhhhc-cc-ccchh
Q 014367 290 YRPLWLLSSVINSLYSFYWDVTRDWDLSGFSRIFKFNKPSFFSNLLYGRQWIYFWVIGSNLILRCTWTYKL-SA-HLRHN 367 (426)
Q Consensus 290 ~~~lWi~~~~inS~Ys~~WDv~mDWgL~~~~~~~~~~~~~LR~~l~y~~~~~YY~Aiv~n~iLRf~W~~~l-~~-~~~~~ 367 (426)
++.+|+.++.+||+||+.|||.||||+...+.. ++...|+++.++ |+.||+.|+++|++|+++. ++ +.+|+
T Consensus 265 l~~l~~~~a~lnS~yT~~WDV~mDW~l~~~~~~---~~~~kr~~~~l~----y~~a~~inFllR~~Wi~~~~~~~~~~~~ 337 (384)
T COG5409 265 LFHLQIWFALLNSIYTSFWDVFMDWSLDSLTSL---RSWSKRAVTLLK----YHIAMIINFLLRFSWIVYYLPPNHIQHS 337 (384)
T ss_pred eehHHHHHHHHHHHHHHhHHhheeeeecccccc---hhccccchhHHH----HHHHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 678999999999999999999999999754321 223355555554 8999999999999999984 44 34555
Q ss_pred hHHH-HHHHHHHHHhhhcceeeeeehhhh-hhc
Q 014367 368 HLTV-FAVAVLEMLRRFQWIFFRVESEWN-KIT 398 (426)
Q Consensus 368 ~~~~-f~~a~lEI~RR~iWnffRvEnEhi-~~~ 398 (426)
.... |+++.+||+|||+|++||||+||. |..
T Consensus 338 ~~~~~F~m~~lEi~RR~vW~~FrveaE~~~n~~ 370 (384)
T COG5409 338 ADIFIFIMQLLEILRRFVWVFFRVEAEHSINFA 370 (384)
T ss_pred hhhHHHHHHHHHHHHhheeeEEEeehHHHhhHH
Confidence 4333 899999999999999999999994 443
No 4
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=25.71 E-value=55 Score=26.52 Aligned_cols=29 Identities=17% Similarity=0.373 Sum_probs=24.0
Q ss_pred HHHHHHHhhhcCCcchhhhHHHHhhhHHH
Q 014367 243 LLQCLRQYKDTKEKTTLLNALKYSTAVPV 271 (426)
Q Consensus 243 ~~QClRry~dt~~~~hL~Na~KY~sa~~v 271 (426)
++||+++|.++++...|+++++=...-|.
T Consensus 24 ~~~~L~~Y~~~~~Vd~LV~~L~~vLdtPa 52 (78)
T cd07347 24 VTRALERYHQERNVDDLVRDLYLVLDTPA 52 (78)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHcCcHh
Confidence 68999999999988889888887666553
No 5
>PF11753 DUF3310: Protein of unknwon function (DUF3310); InterPro: IPR021739 This entry is represented by Bacteriophage T7, Gp1.7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.38 E-value=42 Score=25.57 Aligned_cols=12 Identities=42% Similarity=0.285 Sum_probs=9.9
Q ss_pred cchhhhHHHHhh
Q 014367 256 KTTLLNALKYST 267 (426)
Q Consensus 256 ~~hL~Na~KY~s 267 (426)
..++.||+||++
T Consensus 29 ~f~~gnaiKY~~ 40 (60)
T PF11753_consen 29 GFCLGNAIKYLW 40 (60)
T ss_pred hHHHHHHHHHHH
Confidence 468999999964
No 6
>KOG4116 consensus Ubiquinol cytochrome c reductase, subunit QCR8 [Energy production and conversion]
Probab=21.78 E-value=56 Score=27.03 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=23.2
Q ss_pred hcccccchhhHHHHHHHHHHHHhhhcce-eeeee
Q 014367 359 KLSAHLRHNHLTVFAVAVLEMLRRFQWI-FFRVE 391 (426)
Q Consensus 359 ~l~~~~~~~~~~~f~~a~lEI~RR~iWn-ffRvE 391 (426)
++||..|...-..|--++--++||+.|+ +|++=
T Consensus 25 aLSPfeQra~~g~F~~~~~n~fRr~~~~~~y~~i 58 (90)
T KOG4116|consen 25 ALSPFEQRAYAGFFDKAFPNMFRRFRSDQLYVVI 58 (90)
T ss_pred ecCchhhccccchhhhhhHHHHHHhhhccEEEEe
Confidence 3455445444556667889999999999 77763
No 7
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=21.52 E-value=1.5e+02 Score=23.03 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhcccccchhhHHHHHHHHhHhhcC
Q 014367 141 LLYIAIAIVLIFPFDIFYLSSRYFFLRTLWRIALP 175 (426)
Q Consensus 141 ~l~~~~~~~l~~P~~i~~~~~R~~llr~l~Ril~p 175 (426)
+..+++.++++.|..-..++...+..+.+.+.++|
T Consensus 7 iQii~l~AlI~~pLGyl~~~~~~r~~~~lr~~l~~ 41 (62)
T PF11120_consen 7 IQIIILCALIFFPLGYLARRWLPRIRRTLRRRLFP 41 (62)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHhcC
Confidence 44556667788888877777777788888888754
No 8
>PF11952 DUF3469: Protein of unknown function (DUF3469); InterPro: IPR021859 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 108 to 439 amino acids in length.
Probab=15.07 E-value=50 Score=27.24 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.4
Q ss_pred HHhhhhHHHhhcccceeEEEEe
Q 014367 187 ADILTSMAKVFSDLERSICRMV 208 (426)
Q Consensus 187 aDqLtSl~~~l~Dl~~~~C~y~ 208 (426)
-|+|.+++.++.++++..|-|-
T Consensus 33 ~d~L~~Ls~v~~N~~fLGC~Yp 54 (87)
T PF11952_consen 33 EDRLLCLSQVWANMEFLGCRYP 54 (87)
T ss_pred HHHHHHHHHHHHhHHHHhcCCC
Confidence 3999999999999999999884
No 9
>PF04133 Vps55: Vacuolar protein sorting 55 ; InterPro: IPR007262 Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase. Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells [].
Probab=14.31 E-value=3.9e+02 Score=23.32 Aligned_cols=73 Identities=21% Similarity=0.259 Sum_probs=41.4
Q ss_pred HhhhhHHHHHHHHHHHhhhcCCc----chhhhHHHHhhhHHHHHHHHhh---hhccCCCCccchhhHHHH----HHHHHH
Q 014367 234 VLVFPYLCRLLQCLRQYKDTKEK----TTLLNALKYSTAVPVIFLSALK---YHVFPHKWSSVYRPLWLL----SSVINS 302 (426)
Q Consensus 234 ~~~lP~~iR~~QClRry~dt~~~----~hL~Na~KY~sa~~vi~~s~l~---~~~~~~~~~~~~~~lWi~----~~~inS 302 (426)
++-+|..+ -||+.++.+. ....+.+|+.|+..++---++. +|..--+| -..++. ..+..|
T Consensus 36 laPiP~~i-----~~~~~~~~~~~~~~~~~~d~~~FlT~~~vvSg~aLP~VL~H~~~I~~----~A~~l~l~g~~ii~~t 106 (120)
T PF04133_consen 36 LAPIPNLI-----ARRYSSDDDFSSDSGSCQDFGKFLTGFLVVSGFALPIVLAHAGIIQW----GACGLSLAGGVIIYAT 106 (120)
T ss_pred HHhhhHHH-----HCCCCCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHhhHHHHHH
Confidence 45667665 4555544332 2389999999998875433332 34321111 122221 235578
Q ss_pred HHHHhhhhhhcCC
Q 014367 303 LYSFYWDVTRDWD 315 (426)
Q Consensus 303 ~Ys~~WDv~mDWg 315 (426)
++.|.|-...|+.
T Consensus 107 i~~f~~~f~~~dd 119 (120)
T PF04133_consen 107 IIGFFWFFGEEDD 119 (120)
T ss_pred HHHHHhhccCcCC
Confidence 8888887777763
No 10
>PF15269 zf-C2H2_7: Zinc-finger
Probab=13.63 E-value=45 Score=24.32 Aligned_cols=15 Identities=47% Similarity=0.733 Sum_probs=12.0
Q ss_pred CCcchhhhHHHHhhh
Q 014367 254 KEKTTLLNALKYSTA 268 (426)
Q Consensus 254 ~~~~hL~Na~KY~sa 268 (426)
.++.||+|-.||...
T Consensus 31 ~~kshl~nhmky~lc 45 (54)
T PF15269_consen 31 NEKSHLFNHMKYSLC 45 (54)
T ss_pred chHHHHHHHHHHHhh
Confidence 456899999999753
Done!