Query 014367
Match_columns 426
No_of_seqs 204 out of 495
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 10:17:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2r_A Antimicrobial peptide e 46.5 6.2 0.00021 25.9 0.8 11 244-254 9-19 (37)
2 2gww_B IPAA; protein complex, 16.4 66 0.0023 19.8 1.5 14 187-200 16-29 (30)
3 3cx5_I Cytochrome B-C1 complex 6.4 65 0.0022 24.1 -1.3 12 393-404 40-53 (65)
4 3arc_L Photosystem II reaction 6.1 6.4E+02 0.022 16.5 3.6 19 24-42 14-32 (37)
5 2qlw_A RHAU; mutarotase, isome 5.7 86 0.0029 27.1 -1.1 14 243-256 18-31 (144)
6 3bu8_A Telomeric repeat-bindin 5.1 3.1E+02 0.011 25.4 2.2 17 238-254 57-73 (235)
7 2vof_B BCL-2-binding component 4.8 4.3E+02 0.015 16.0 1.9 16 238-253 2-18 (26)
8 2cmy_B Beta trypsin, veronica 4.8 1.9E+02 0.0066 18.2 0.4 10 377-386 19-28 (34)
9 3bqo_A Telomeric repeat-bindin 4.5 3.6E+02 0.012 24.6 2.2 17 238-254 63-79 (211)
10 2b5b_A Defensin; antibiotic; N 4.3 29 0.00099 22.2 -3.7 11 260-270 22-32 (36)
No 1
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=46.48 E-value=6.2 Score=25.92 Aligned_cols=11 Identities=36% Similarity=0.730 Sum_probs=9.1
Q ss_pred HHHHHHhhhcC
Q 014367 244 LQCLRQYKDTK 254 (426)
Q Consensus 244 ~QClRry~dt~ 254 (426)
.||+|||.|..
T Consensus 9 rqC~Rr~edeP 19 (37)
T 2l2r_A 9 SQCMRRHEDEP 19 (37)
T ss_dssp HHHHHHTSSCG
T ss_pred HHHHHhccCCc
Confidence 59999998863
No 2
>2gww_B IPAA; protein complex, cell adhesion, structural protein; 2.72A {Shigella flexneri}
Probab=16.44 E-value=66 Score=19.78 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=11.6
Q ss_pred HHhhhhHHHhhccc
Q 014367 187 ADILTSMAKVFSDL 200 (426)
Q Consensus 187 aDqLtSl~~~l~Dl 200 (426)
-|.-||++|++.++
T Consensus 16 kdvttslskvlkni 29 (30)
T 2gww_B 16 KDVTTSLSKVLKNI 29 (30)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHcc
Confidence 48889999998875
No 3
>3cx5_I Cytochrome B-C1 complex subunit 9; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.14.1 PDB: 3cxh_I* 2ibz_I* 1kyo_I* 1ezv_I* 1kb9_I* 1p84_I*
Probab=6.37 E-value=65 Score=24.10 Aligned_cols=12 Identities=17% Similarity=0.086 Sum_probs=6.4
Q ss_pred hhhhhcc--cccCC
Q 014367 393 EWNKITK--SSFQL 404 (426)
Q Consensus 393 Ehi~~~~--~~~~l 404 (426)
|++|-+| |+++.
T Consensus 40 ~~~NkGKlwkDIk~ 53 (65)
T 3cx5_I 40 ENHNKGKLWKDVKA 53 (65)
T ss_dssp HHHTTTTSHHHHHH
T ss_pred HhccCCCCcccChh
Confidence 4666664 44443
No 4
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=6.07 E-value=6.4e+02 Score=16.54 Aligned_cols=19 Identities=16% Similarity=-0.139 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014367 24 KVMLFLIWGIGCCKIGWES 42 (426)
Q Consensus 24 ~~glf~~~~~~~~~~~~~~ 42 (426)
|..||.|-+++++...+.+
T Consensus 14 RTSLy~GLLlifvlavlFs 32 (37)
T 3arc_L 14 RTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhh
Confidence 5678888777776655554
No 5
>2qlw_A RHAU; mutarotase, isomerase; HET: MSE; 1.60A {Rhizobium leguminosarum BV} PDB: 2qlx_A*
Probab=5.67 E-value=86 Score=27.10 Aligned_cols=14 Identities=29% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcCCc
Q 014367 243 LLQCLRQYKDTKEK 256 (426)
Q Consensus 243 ~~QClRry~dt~~~ 256 (426)
=.||+|+|+|..++
T Consensus 18 ~~~~~~~~~~~~~~ 31 (144)
T 2qlw_A 18 GQQMGRDLYDDDDK 31 (144)
T ss_dssp --------------
T ss_pred hHHHHHHHhcccch
Confidence 46999999977443
No 6
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=5.08 E-value=3.1e+02 Score=25.44 Aligned_cols=17 Identities=29% Similarity=0.651 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHhhhcC
Q 014367 238 PYLCRLLQCLRQYKDTK 254 (426)
Q Consensus 238 P~~iR~~QClRry~dt~ 254 (426)
.--+|.+|||.|-.+.+
T Consensus 57 ~k~iri~QfLsRI~eG~ 73 (235)
T 3bu8_A 57 SRLLRVMQCLSRIEEGE 73 (235)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHcCC
Confidence 45789999999998654
No 7
>2vof_B BCL-2-binding component 3; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2roc_B
Probab=4.81 E-value=4.3e+02 Score=16.03 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=11.6
Q ss_pred hHHHHHH-HHHHHhhhc
Q 014367 238 PYLCRLL-QCLRQYKDT 253 (426)
Q Consensus 238 P~~iR~~-QClRry~dt 253 (426)
|.|+|-. -||||-.|.
T Consensus 2 ~~w~R~~~a~L~~~a~D 18 (26)
T 2vof_B 2 EEWAREIGAQLRRIADD 18 (26)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhchh
Confidence 5677755 689988765
No 8
>2cmy_B Beta trypsin, veronica hederifolia trypsin inhibitor; acyl-enzyme intermediate, serine protease inhibitor, zymogen protease, digestion; 2.25A {Veronica hederifolia} SCOP: g.2.4.1
Probab=4.79 E-value=1.9e+02 Score=18.19 Aligned_cols=10 Identities=40% Similarity=0.239 Sum_probs=6.2
Q ss_pred HHHHhhhcce
Q 014367 377 LEMLRRFQWI 386 (426)
Q Consensus 377 lEI~RR~iWn 386 (426)
-|++||+.=|
T Consensus 19 pellrrcldn 28 (34)
T 2cmy_B 19 PELLRRCLDN 28 (34)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3677776544
No 9
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=4.48 E-value=3.6e+02 Score=24.60 Aligned_cols=17 Identities=18% Similarity=0.020 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHhhhcC
Q 014367 238 PYLCRLLQCLRQYKDTK 254 (426)
Q Consensus 238 P~~iR~~QClRry~dt~ 254 (426)
+--+|++|||.|-.+.+
T Consensus 63 ~k~i~icQfL~RI~eG~ 79 (211)
T 3bqo_A 63 LRTIYICQFLTRIAAGK 79 (211)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred cchHHHHHHHHHHHcCC
Confidence 45689999999998654
No 10
>2b5b_A Defensin; antibiotic; NMR {Caretta caretta}
Probab=4.35 E-value=29 Score=22.21 Aligned_cols=11 Identities=45% Similarity=0.609 Sum_probs=8.0
Q ss_pred hhHHHHhhhHH
Q 014367 260 LNALKYSTAVP 270 (426)
Q Consensus 260 ~Na~KY~sa~~ 270 (426)
+|.+||.+.+|
T Consensus 22 yncgkyiccvp 32 (36)
T 2b5b_A 22 YNCGKYICCVP 32 (36)
T ss_dssp SSBCCSSCSSS
T ss_pred ccCCceEEeEE
Confidence 78888876654
Done!