Query 014367
Match_columns 426
No_of_seqs 204 out of 495
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 10:18:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014367.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014367hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 6.1 2.4E+02 0.018 15.5 2.8 16 71-86 11-26 (27)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 5.5 3.2E+02 0.023 16.3 3.6 19 24-42 14-32 (37)
3 d3pvia_ c.52.1.6 (A:) Restrict 5.3 1.3E+02 0.0095 23.6 1.8 32 240-271 8-44 (156)
4 d1rkla_ f.23.30.1 (A:) Oligosa 4.2 1.2E+02 0.0087 18.1 0.6 11 188-198 5-15 (36)
5 d1jb0j_ f.23.18.1 (J:) Subunit 4.1 2.3E+02 0.017 17.6 2.0 14 260-273 2-15 (41)
6 d1q90n_ f.23.27.1 (N:) PetN su 4.0 3.7E+02 0.027 15.3 2.7 16 71-86 15-30 (31)
7 d3bqoa1 a.146.1.1 (A:62-265) T 3.9 2E+02 0.015 24.0 2.2 16 239-254 60-75 (204)
8 d1ut3a_ g.9.1.1 (A:) Beta-defe 3.6 11 0.00078 22.9 -4.7 8 242-249 29-36 (38)
9 d1h6pa_ a.146.1.1 (A:) TRF2 {H 3.1 2.7E+02 0.019 23.2 2.2 17 238-254 56-72 (203)
10 d1koha2 d.58.7.2 (A:105-200) m 3.0 3.2E+02 0.023 19.9 2.3 21 162-182 28-49 (96)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.06 E-value=2.4e+02 Score=15.49 Aligned_cols=16 Identities=19% Similarity=0.721 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhcCC
Q 014367 71 MVWLWGVNLWVFSQGS 86 (426)
Q Consensus 71 ~~~l~g~nl~vw~~~~ 86 (426)
..+-|++.+-+|.|.|
T Consensus 11 vvftwsiamvvwgrng 26 (27)
T d2e74h1 11 VVFTWSIAMVVWGRNG 26 (27)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHhhheeeeEEEccCC
Confidence 3567788888898876
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.54 E-value=3.2e+02 Score=16.29 Aligned_cols=19 Identities=16% Similarity=-0.139 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014367 24 KVMLFLIWGIGCCKIGWES 42 (426)
Q Consensus 24 ~~glf~~~~~~~~~~~~~~ 42 (426)
|..||.|-++++....+.+
T Consensus 14 rtsLy~GlLlifvl~vLFs 32 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 5677888777775555544
No 3
>d3pvia_ c.52.1.6 (A:) Restriction endonuclease PvuII {Proteus vulgaris [TaxId: 585]}
Probab=5.29 E-value=1.3e+02 Score=23.57 Aligned_cols=32 Identities=22% Similarity=0.192 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhhcCCc-----chhhhHHHHhhhHHH
Q 014367 240 LCRLLQCLRQYKDTKEK-----TTLLNALKYSTAVPV 271 (426)
Q Consensus 240 ~iR~~QClRry~dt~~~-----~hL~Na~KY~sa~~v 271 (426)
+.|++-|+|+|.+--++ .---|.|||.--+++
T Consensus 8 ~~~l~p~i~eyq~la~k~~INDiFQdNGGKlLQvlmi 44 (156)
T d3pvia_ 8 LLELWPHIQEYQDLALKHGINDIFQGNGGKLLQVLLI 44 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCTTSTTHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHcCchhhhhcCChhhhHHHHH
Confidence 57888899999864322 234799999876654
No 4
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.19 E-value=1.2e+02 Score=18.06 Aligned_cols=11 Identities=36% Similarity=0.546 Sum_probs=7.5
Q ss_pred HhhhhHHHhhc
Q 014367 188 DILTSMAKVFS 198 (426)
Q Consensus 188 DqLtSl~~~l~ 198 (426)
|||+|++..++
T Consensus 5 ~qln~~~i~fg 15 (36)
T d1rkla_ 5 EQLNSLAITFG 15 (36)
T ss_dssp CGGGHHHHHHH
T ss_pred hhcCcEEeehh
Confidence 67777776655
No 5
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=4.13 E-value=2.3e+02 Score=17.57 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=11.5
Q ss_pred hhHHHHhhhHHHHH
Q 014367 260 LNALKYSTAVPVIF 273 (426)
Q Consensus 260 ~Na~KY~sa~~vi~ 273 (426)
-|..||.++-||+.
T Consensus 2 ~~~~~ylstAPVla 15 (41)
T d1jb0j_ 2 KHFLTYLSTAPVLA 15 (41)
T ss_dssp HHHHHHTTBHHHHH
T ss_pred chHHHHHhhhHHHH
Confidence 47789999999865
No 6
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.99 E-value=3.7e+02 Score=15.26 Aligned_cols=16 Identities=13% Similarity=0.470 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhcCC
Q 014367 71 MVWLWGVNLWVFSQGS 86 (426)
Q Consensus 71 ~~~l~g~nl~vw~~~~ 86 (426)
..+.|.+.+-+|.|.|
T Consensus 15 atfsfslslvvwgrsg 30 (31)
T d1q90n_ 15 VMFSFSLSLVVWGRSG 30 (31)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HhheeeEEEEEEeccC
Confidence 4577788888888876
No 7
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.87 E-value=2e+02 Score=23.96 Aligned_cols=16 Identities=19% Similarity=0.069 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhhcC
Q 014367 239 YLCRLLQCLRQYKDTK 254 (426)
Q Consensus 239 ~~iR~~QClRry~dt~ 254 (426)
-.+|++|||.|--+.+
T Consensus 60 k~i~i~QfLsRI~eG~ 75 (204)
T d3bqoa1 60 RTIYICQFLTRIAAGK 75 (204)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHcCC
Confidence 3689999999987654
No 8
>d1ut3a_ g.9.1.1 (A:) Beta-defensin, BD {King penguin (Aptenodytes patagonicus), spheniscin-2 [TaxId: 9234]}
Probab=3.56 E-value=11 Score=22.95 Aligned_cols=8 Identities=50% Similarity=1.140 Sum_probs=4.7
Q ss_pred HHHHHHHH
Q 014367 242 RLLQCLRQ 249 (426)
Q Consensus 242 R~~QClRr 249 (426)
||.||-||
T Consensus 29 rfvqccrr 36 (38)
T d1ut3a_ 29 RFVQCCRR 36 (38)
T ss_dssp SSSEEEEE
T ss_pred HHHHHHHh
Confidence 55666554
No 9
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.13 E-value=2.7e+02 Score=23.19 Aligned_cols=17 Identities=29% Similarity=0.651 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHhhhcC
Q 014367 238 PYLCRLLQCLRQYKDTK 254 (426)
Q Consensus 238 P~~iR~~QClRry~dt~ 254 (426)
+--+|++|||.|--+.+
T Consensus 56 ~kti~i~QfL~RI~eG~ 72 (203)
T d1h6pa_ 56 SRLLRVMQCLSRIEEGE 72 (203)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHcCC
Confidence 34689999999987654
No 10
>d1koha2 d.58.7.2 (A:105-200) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.01 E-value=3.2e+02 Score=19.90 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=15.1
Q ss_pred HHHHHHHHhHhh-cCCceeccc
Q 014367 162 RYFFLRTLWRIA-LPLQAITFP 182 (426)
Q Consensus 162 R~~llr~l~Ril-~pf~~V~F~ 182 (426)
.-|+++.+..+. .||.||.|.
T Consensus 28 K~wLl~~iq~~~pv~F~Pv~fh 49 (96)
T d1koha2 28 KAWLLSMIQSKSSVPFTPIEFH 49 (96)
T ss_dssp HHHHHHHHHHTCSSCCCCBSCC
T ss_pred HHHHHHHHHhcCCCCceeEEEE
Confidence 458998886654 478888874
Done!