Query 014368
Match_columns 426
No_of_seqs 293 out of 1790
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:27:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2071 Predicted glutamine am 100.0 6.4E-49 1.4E-53 372.4 20.0 236 9-283 2-241 (243)
2 PRK11366 puuD gamma-glutamyl-g 100.0 2.6E-42 5.7E-47 336.0 23.7 237 9-285 6-249 (254)
3 PF07722 Peptidase_C26: Peptid 100.0 6.4E-43 1.4E-47 332.9 13.5 210 11-254 1-217 (217)
4 cd01745 GATase1_2 Subgroup of 100.0 1.8E-32 3.9E-37 255.6 17.4 185 13-277 1-189 (189)
5 PRK08007 para-aminobenzoate sy 100.0 1E-31 2.2E-36 250.3 17.0 182 13-278 2-186 (187)
6 PRK06186 hypothetical protein; 100.0 1.1E-30 2.4E-35 249.5 18.8 174 60-282 50-228 (229)
7 TIGR00888 guaA_Nterm GMP synth 100.0 2.9E-30 6.2E-35 240.0 17.4 170 34-279 14-183 (188)
8 TIGR00566 trpG_papA glutamine 100.0 4.2E-30 9.1E-35 239.6 18.1 182 13-278 2-187 (188)
9 PRK05670 anthranilate synthase 100.0 6.1E-30 1.3E-34 238.3 17.9 184 13-280 2-188 (189)
10 PRK06774 para-aminobenzoate sy 100.0 4.3E-30 9.4E-35 239.6 16.7 182 13-278 2-190 (191)
11 PRK07765 para-aminobenzoate sy 100.0 7.2E-30 1.6E-34 242.8 17.8 189 12-281 2-193 (214)
12 PRK07649 para-aminobenzoate/an 100.0 1.6E-29 3.5E-34 237.2 17.6 185 13-281 2-189 (195)
13 PRK00758 GMP synthase subunit 100.0 1E-29 2.3E-34 235.5 16.1 182 13-283 2-184 (184)
14 COG0512 PabA Anthranilate/para 100.0 1E-29 2.3E-34 234.6 15.9 185 11-279 2-190 (191)
15 cd01742 GATase1_GMP_Synthase T 100.0 1.6E-29 3.5E-34 232.7 16.8 169 33-277 13-181 (181)
16 TIGR01368 CPSaseIIsmall carbam 100.0 6E-29 1.3E-33 252.4 21.7 169 32-281 185-357 (358)
17 CHL00101 trpG anthranilate syn 100.0 2.7E-29 5.8E-34 234.5 16.4 183 13-279 2-188 (190)
18 PRK12564 carbamoyl phosphate s 100.0 8.6E-29 1.9E-33 251.5 21.4 168 32-279 189-359 (360)
19 PLN02335 anthranilate synthase 100.0 4.5E-29 9.8E-34 238.6 17.3 196 10-286 18-219 (222)
20 PRK08857 para-aminobenzoate sy 100.0 8.3E-29 1.8E-33 231.6 17.6 183 13-279 2-192 (193)
21 cd01744 GATase1_CPSase Small c 100.0 1.5E-28 3.4E-33 226.9 19.1 165 33-277 11-178 (178)
22 PRK06895 putative anthranilate 100.0 1E-28 2.3E-33 230.3 17.7 185 11-279 2-188 (190)
23 PRK05637 anthranilate synthase 100.0 2.4E-28 5.3E-33 231.4 19.8 194 11-281 2-206 (208)
24 COG0505 CarA Carbamoylphosphat 100.0 1.2E-28 2.6E-33 244.8 17.9 175 31-285 190-367 (368)
25 PLN02347 GMP synthetase 100.0 1.2E-28 2.5E-33 261.9 18.0 200 4-281 4-203 (536)
26 PRK05380 pyrG CTP synthetase; 100.0 2.5E-28 5.3E-33 256.2 20.0 180 57-285 337-531 (533)
27 cd01743 GATase1_Anthranilate_S 100.0 1.9E-28 4.2E-33 226.8 17.1 182 13-277 1-184 (184)
28 PRK12838 carbamoyl phosphate s 100.0 1.2E-27 2.5E-32 242.7 21.2 171 31-282 178-352 (354)
29 cd01746 GATase1_CTP_Synthase T 100.0 8.3E-28 1.8E-32 231.7 18.6 213 11-277 1-235 (235)
30 PRK00074 guaA GMP synthase; Re 100.0 3.5E-28 7.5E-33 257.9 16.9 185 10-278 3-187 (511)
31 TIGR00337 PyrG CTP synthase. C 100.0 1.2E-27 2.6E-32 250.9 19.9 216 10-279 289-525 (525)
32 cd01747 GATase1_Glutamyl_Hydro 99.9 3E-27 6.6E-32 232.5 16.2 201 13-267 1-226 (273)
33 COG0518 GuaA GMP synthase - Gl 99.9 5.1E-27 1.1E-31 220.7 15.0 187 11-278 2-191 (198)
34 CHL00197 carA carbamoyl-phosph 99.9 7.2E-26 1.6E-30 231.3 20.7 170 33-284 205-378 (382)
35 PRK14607 bifunctional glutamin 99.9 1.6E-26 3.5E-31 246.4 15.8 186 12-281 1-190 (534)
36 PRK13566 anthranilate synthase 99.9 5.5E-26 1.2E-30 248.5 18.9 193 9-281 525-719 (720)
37 PF00117 GATase: Glutamine ami 99.9 4.2E-26 9E-31 211.5 14.3 175 32-277 11-189 (192)
38 PRK09522 bifunctional glutamin 99.9 5.1E-26 1.1E-30 241.9 15.8 187 11-282 2-192 (531)
39 PLN02771 carbamoyl-phosphate s 99.9 3E-25 6.5E-30 227.7 20.2 157 32-262 252-411 (415)
40 cd01741 GATase1_1 Subgroup of 99.9 3.8E-25 8.2E-30 205.0 17.8 162 31-254 13-180 (188)
41 TIGR01815 TrpE-clade3 anthrani 99.9 2.6E-25 5.7E-30 242.9 18.9 193 9-281 515-709 (717)
42 PRK09065 glutamine amidotransf 99.9 2.1E-25 4.5E-30 215.3 15.9 156 37-256 30-189 (237)
43 PLN02889 oxo-acid-lyase/anthra 99.9 3.4E-25 7.5E-30 245.1 19.3 199 12-287 83-342 (918)
44 PRK05665 amidotransferase; Pro 99.9 5.7E-25 1.2E-29 212.7 18.0 183 12-258 4-191 (240)
45 PRK07567 glutamine amidotransf 99.9 9.3E-25 2E-29 211.4 18.7 188 9-257 1-194 (242)
46 KOG0370 Multifunctional pyrimi 99.9 1.7E-24 3.7E-29 232.5 17.0 197 31-311 183-382 (1435)
47 PRK06490 glutamine amidotransf 99.9 1.1E-23 2.4E-28 203.6 19.4 177 9-256 6-182 (239)
48 TIGR01823 PabB-fungal aminodeo 99.9 8.7E-24 1.9E-28 232.5 19.1 199 10-287 5-211 (742)
49 COG0504 PyrG CTP synthase (UTP 99.9 8.8E-24 1.9E-28 216.8 16.7 156 114-286 362-532 (533)
50 PLN02327 CTP synthase 99.9 2.5E-23 5.4E-28 218.9 18.9 173 59-285 358-551 (557)
51 PRK13525 glutamine amidotransf 99.9 6.4E-23 1.4E-27 191.6 17.9 188 10-281 1-188 (189)
52 PRK08250 glutamine amidotransf 99.9 1.3E-22 2.8E-27 195.7 17.0 166 32-257 15-184 (235)
53 PRK07053 glutamine amidotransf 99.9 2.2E-22 4.8E-27 193.9 18.2 178 10-257 2-182 (234)
54 COG0118 HisH Glutamine amidotr 99.9 2.8E-22 6.1E-27 186.4 13.7 195 11-280 2-203 (204)
55 PRK13146 hisH imidazole glycer 99.9 6.4E-22 1.4E-26 187.6 15.8 190 12-279 3-207 (209)
56 PRK13141 hisH imidazole glycer 99.9 2E-22 4.2E-27 190.0 11.4 178 32-281 13-203 (205)
57 PRK13143 hisH imidazole glycer 99.9 2.6E-21 5.6E-26 182.1 17.6 193 12-281 2-199 (200)
58 PRK13152 hisH imidazole glycer 99.9 8.6E-22 1.9E-26 185.4 13.4 179 33-278 14-200 (201)
59 PRK13527 glutamine amidotransf 99.9 4.2E-21 9.2E-26 180.5 16.5 169 33-281 18-198 (200)
60 CHL00188 hisH imidazole glycer 99.9 1.1E-21 2.3E-26 186.3 11.9 192 12-279 3-209 (210)
61 KOG1622 GMP synthase [Nucleoti 99.9 1.4E-21 3.1E-26 197.8 13.0 188 8-277 14-201 (552)
62 cd01748 GATase1_IGP_Synthase T 99.9 1.4E-21 3.1E-26 183.0 11.4 172 34-277 14-198 (198)
63 PRK13181 hisH imidazole glycer 99.9 1.9E-21 4.2E-26 182.5 12.0 172 33-278 14-198 (199)
64 KOG0026 Anthranilate synthase, 99.9 6.4E-21 1.4E-25 171.3 13.4 193 8-281 17-215 (223)
65 PRK13170 hisH imidazole glycer 99.8 1.5E-20 3.3E-25 176.5 15.4 175 34-278 16-195 (196)
66 TIGR01855 IMP_synth_hisH imida 99.8 3.1E-20 6.8E-25 174.2 11.5 170 34-279 14-196 (196)
67 PRK14004 hisH imidazole glycer 99.8 7.7E-20 1.7E-24 173.7 14.2 178 33-279 14-209 (210)
68 TIGR01737 FGAM_synth_I phospho 99.8 5.2E-19 1.1E-23 169.7 16.9 194 12-279 2-226 (227)
69 cd01749 GATase1_PB Glutamine A 99.8 3.8E-19 8.2E-24 165.2 13.2 172 33-277 12-183 (183)
70 TIGR03800 PLP_synth_Pdx2 pyrid 99.8 1.6E-18 3.5E-23 161.4 16.4 171 34-278 14-184 (184)
71 KOG2387 CTP synthase (UTP-ammo 99.8 3.5E-18 7.6E-23 173.0 14.6 181 55-282 355-549 (585)
72 PRK13142 hisH imidazole glycer 99.8 7E-18 1.5E-22 158.0 14.9 170 32-279 13-187 (192)
73 PRK03619 phosphoribosylformylg 99.8 2.6E-17 5.7E-22 157.2 18.0 198 12-278 2-218 (219)
74 PLN02617 imidazole glycerol ph 99.8 1.2E-17 2.6E-22 177.9 17.1 197 10-282 6-212 (538)
75 PLN02832 glutamine amidotransf 99.7 2.2E-16 4.9E-21 153.1 18.8 197 11-282 2-216 (248)
76 KOG1559 Gamma-glutamyl hydrola 99.7 3.4E-17 7.4E-22 155.3 11.8 209 9-273 51-287 (340)
77 KOG3179 Predicted glutamine sy 99.7 5.2E-17 1.1E-21 150.5 10.4 164 35-257 31-196 (245)
78 KOG1224 Para-aminobenzoate (PA 99.7 1.7E-16 3.6E-21 163.7 12.3 198 10-283 14-220 (767)
79 PRK05368 homoserine O-succinyl 99.6 2E-14 4.4E-19 143.1 15.1 138 62-258 98-241 (302)
80 PRK01175 phosphoribosylformylg 99.5 3.8E-13 8.3E-18 131.8 18.0 224 9-280 2-257 (261)
81 cd01740 GATase1_FGAR_AT Type 1 99.5 1.3E-12 2.9E-17 126.3 15.9 177 33-259 14-218 (238)
82 PRK13526 glutamine amidotransf 99.4 1.9E-12 4.1E-17 120.0 14.0 175 11-278 3-178 (179)
83 COG0047 PurL Phosphoribosylfor 99.4 7.1E-12 1.5E-16 118.9 17.3 201 10-279 2-229 (231)
84 KOG0623 Glutamine amidotransfe 99.4 3.2E-12 7E-17 126.7 10.3 178 33-278 16-206 (541)
85 PF01174 SNO: SNO glutamine am 99.3 2.6E-11 5.6E-16 112.5 12.5 167 32-281 9-187 (188)
86 COG0311 PDX2 Predicted glutami 99.3 8.6E-11 1.9E-15 108.3 14.9 183 12-281 2-191 (194)
87 PF13507 GATase_5: CobB/CobQ-l 99.2 2.8E-10 6.1E-15 111.5 15.7 226 10-280 1-259 (259)
88 TIGR01857 FGAM-synthase phosph 99.1 1.7E-09 3.6E-14 124.4 19.0 226 8-278 975-1237(1239)
89 PRK05297 phosphoribosylformylg 98.8 7.8E-08 1.7E-12 112.3 16.8 203 9-260 1034-1263(1290)
90 PLN03206 phosphoribosylformylg 98.8 1E-07 2.3E-12 110.6 17.7 230 9-280 1036-1306(1307)
91 TIGR01735 FGAM_synt phosphorib 98.8 4.9E-08 1.1E-12 113.8 14.1 203 8-259 1053-1283(1310)
92 cd01750 GATase1_CobQ Type 1 gl 98.5 4.8E-07 1E-11 84.9 9.9 75 35-142 16-90 (194)
93 cd03130 GATase1_CobB Type 1 gl 98.5 4E-07 8.7E-12 85.8 8.5 84 27-141 9-92 (198)
94 PF04204 HTS: Homoserine O-suc 98.4 4.5E-06 9.7E-11 83.2 14.3 149 62-281 97-251 (298)
95 PHA03366 FGAM-synthase; Provis 98.4 5.1E-06 1.1E-10 97.3 16.6 234 8-282 1026-1301(1304)
96 cd03131 GATase1_HTS Type 1 glu 98.4 4.2E-07 9E-12 84.3 5.8 110 61-222 60-174 (175)
97 PRK01077 cobyrinic acid a,c-di 98.4 2.1E-05 4.6E-10 83.0 18.5 94 11-141 246-339 (451)
98 TIGR01739 tegu_FGAM_synt herpe 98.3 9.1E-06 2E-10 94.7 15.1 206 9-258 928-1170(1202)
99 TIGR00379 cobB cobyrinic acid 98.3 4.2E-05 9.1E-10 80.8 17.8 94 11-141 245-338 (449)
100 TIGR01001 metA homoserine O-su 98.1 3.5E-05 7.7E-10 76.6 11.6 138 62-258 98-240 (300)
101 KOG3210 Imidazoleglycerol-phos 98.0 2.3E-05 4.9E-10 71.7 8.7 23 119-141 85-108 (226)
102 PF07685 GATase_3: CobB/CobQ-l 98.0 5.8E-05 1.3E-09 68.6 10.4 56 61-142 5-60 (158)
103 PRK06278 cobyrinic acid a,c-di 98.0 1.2E-05 2.6E-10 85.3 6.8 20 122-141 63-82 (476)
104 PRK13896 cobyrinic acid a,c-di 98.0 0.00019 4E-09 75.6 15.2 92 11-141 234-325 (433)
105 cd03146 GAT1_Peptidase_E Type 97.9 2.7E-05 5.8E-10 74.1 6.9 99 10-140 31-130 (212)
106 PRK00784 cobyric acid synthase 97.8 2.9E-05 6.3E-10 82.8 6.4 76 33-141 266-342 (488)
107 cd01653 GATase1 Type 1 glutami 97.8 7.1E-05 1.5E-09 59.9 7.3 78 32-137 15-92 (115)
108 KOG1907 Phosphoribosylformylgl 97.7 0.00027 5.9E-09 78.2 10.8 205 7-258 1055-1287(1320)
109 cd03128 GAT_1 Type 1 glutamine 97.6 0.00022 4.7E-09 54.5 6.6 77 33-137 16-92 (92)
110 TIGR00313 cobQ cobyric acid sy 97.3 0.00021 4.6E-09 76.1 4.0 28 114-141 309-336 (475)
111 PRK11780 isoprenoid biosynthes 97.2 0.0036 7.8E-08 60.1 11.3 32 110-141 114-145 (217)
112 cd03169 GATase1_PfpI_1 Type 1 97.1 0.0016 3.5E-08 59.8 7.6 28 113-140 97-124 (180)
113 PRK05282 (alpha)-aspartyl dipe 97.0 0.0015 3.2E-08 63.5 6.9 101 10-142 31-131 (233)
114 COG1492 CobQ Cobyric acid synt 96.9 0.0042 9.2E-08 65.8 9.3 67 42-141 276-342 (486)
115 COG1797 CobB Cobyrinic acid a, 96.9 0.016 3.5E-07 60.6 13.0 197 11-280 246-450 (451)
116 cd03144 GATase1_ScBLP_like Typ 96.7 0.0012 2.6E-08 57.2 2.7 24 114-137 67-90 (114)
117 cd03129 GAT1_Peptidase_E_like 96.6 0.014 3.1E-07 55.1 10.2 100 10-140 29-130 (210)
118 cd03133 GATase1_ES1 Type 1 glu 96.5 0.01 2.2E-07 56.9 7.8 32 111-142 112-143 (213)
119 cd03134 GATase1_PfpI_like A ty 96.4 0.015 3.3E-07 52.3 8.2 28 113-140 83-110 (165)
120 COG3442 Predicted glutamine am 96.4 0.059 1.3E-06 51.7 12.2 75 38-141 30-104 (250)
121 cd03147 GATase1_Ydr533c_like T 96.3 0.021 4.6E-07 55.3 8.8 30 111-140 114-143 (231)
122 cd03132 GATase1_catalase Type 96.0 0.022 4.7E-07 50.1 7.2 96 12-140 3-111 (142)
123 TIGR01382 PfpI intracellular p 96.0 0.011 2.3E-07 53.4 4.9 28 113-140 81-108 (166)
124 PRK11574 oxidative-stress-resi 95.9 0.052 1.1E-06 50.4 9.3 28 113-140 88-115 (196)
125 cd03148 GATase1_EcHsp31_like T 95.8 0.036 7.8E-07 53.7 8.3 51 62-140 95-145 (232)
126 PRK04155 chaperone protein Hch 95.8 0.038 8.3E-07 55.3 8.6 51 61-139 145-195 (287)
127 cd03137 GATase1_AraC_1 AraC tr 95.5 0.063 1.4E-06 49.2 8.4 28 113-140 85-112 (187)
128 PF09825 BPL_N: Biotin-protein 95.3 0.81 1.8E-05 47.5 16.2 51 61-139 47-97 (367)
129 PF01965 DJ-1_PfpI: DJ-1/PfpI 95.2 0.014 3.1E-07 51.9 2.8 30 111-140 58-87 (147)
130 COG1897 MetA Homoserine trans- 95.1 0.062 1.3E-06 52.7 7.0 109 116-258 127-241 (307)
131 cd03145 GAT1_cyanophycinase Ty 94.8 0.071 1.5E-06 51.0 6.7 100 10-140 29-133 (217)
132 cd03140 GATase1_PfpI_3 Type 1 94.3 0.11 2.4E-06 47.3 6.3 28 113-140 80-107 (170)
133 cd03141 GATase1_Hsp31_like Typ 94.1 0.073 1.6E-06 50.9 5.0 28 113-140 112-139 (221)
134 TIGR02069 cyanophycinase cyano 94.1 0.11 2.4E-06 50.9 6.2 99 10-139 28-131 (250)
135 cd03135 GATase1_DJ-1 Type 1 gl 94.0 0.08 1.7E-06 47.2 4.6 28 113-140 82-109 (163)
136 PF03575 Peptidase_S51: Peptid 93.8 0.06 1.3E-06 48.5 3.5 77 33-136 4-81 (154)
137 COG0693 ThiJ Putative intracel 93.4 0.11 2.4E-06 47.8 4.7 28 113-140 88-115 (188)
138 PRK11249 katE hydroperoxidase 93.1 0.33 7.1E-06 54.6 8.5 97 11-140 598-707 (752)
139 cd03138 GATase1_AraC_2 AraC tr 93.1 0.16 3.6E-06 46.9 5.3 28 113-140 93-120 (195)
140 cd03139 GATase1_PfpI_2 Type 1 92.5 0.44 9.5E-06 43.3 7.2 28 113-140 83-110 (183)
141 TIGR01383 not_thiJ DJ-1 family 92.2 0.22 4.8E-06 45.2 4.9 28 113-140 85-112 (179)
142 cd03136 GATase1_AraC_ArgR_like 90.5 0.42 9.1E-06 43.8 4.8 28 113-140 84-111 (185)
143 PRK03372 ppnK inorganic polyph 89.8 1.1 2.4E-05 45.3 7.6 89 5-134 1-106 (306)
144 PRK03378 ppnK inorganic polyph 89.1 1.4 3.1E-05 44.2 7.7 85 10-134 5-97 (292)
145 PRK09393 ftrA transcriptional 88.6 1.1 2.3E-05 45.0 6.5 28 113-140 95-122 (322)
146 PF13278 DUF4066: Putative ami 88.2 0.46 1E-05 42.7 3.3 27 114-140 83-109 (166)
147 PRK14077 pnk inorganic polypho 87.4 2.2 4.7E-05 42.8 7.7 88 5-134 6-98 (287)
148 TIGR00177 molyb_syn molybdenum 87.1 2.6 5.6E-05 37.6 7.4 66 11-76 1-79 (144)
149 PRK02649 ppnK inorganic polyph 85.2 2.7 5.9E-05 42.5 7.3 84 11-134 2-102 (305)
150 COG3340 PepE Peptidase E [Amin 85.1 1.6 3.5E-05 41.9 5.2 74 34-134 54-128 (224)
151 PRK04539 ppnK inorganic polyph 85.0 4.2 9.2E-05 40.9 8.5 85 10-134 5-102 (296)
152 PRK01911 ppnK inorganic polyph 83.9 3.3 7.1E-05 41.6 7.1 83 12-134 2-98 (292)
153 KOG2764 Putative transcription 82.3 5.7 0.00012 38.7 7.7 76 35-142 25-117 (247)
154 PRK01215 competence damage-ind 82.3 3.6 7.8E-05 40.7 6.6 67 9-75 2-74 (264)
155 cd00758 MoCF_BD MoCF_BD: molyb 81.7 5.3 0.00012 34.9 6.9 64 13-76 2-71 (133)
156 PRK02155 ppnK NAD(+)/NADH kina 80.9 5.8 0.00013 39.8 7.6 84 11-134 6-97 (291)
157 TIGR02667 moaB_proteo molybden 78.3 11 0.00023 34.6 7.9 68 9-77 3-77 (163)
158 cd03522 MoeA_like MoeA_like. T 78.0 7.6 0.00017 39.4 7.4 68 10-77 159-233 (312)
159 PRK09417 mogA molybdenum cofac 77.9 4.7 0.0001 38.1 5.5 68 10-77 3-80 (193)
160 cd00886 MogA_MoaB MogA_MoaB fa 76.3 9 0.00019 34.4 6.7 65 12-76 2-74 (152)
161 cd00887 MoeA MoeA family. Memb 74.8 8.4 0.00018 40.2 7.0 67 10-76 168-247 (394)
162 PRK10680 molybdopterin biosynt 74.4 10 0.00022 40.0 7.5 68 10-77 177-257 (411)
163 cd06305 PBP1_methylthioribose_ 74.0 16 0.00034 34.5 8.2 58 13-72 2-64 (273)
164 COG0303 MoeA Molybdopterin bio 73.6 15 0.00033 38.6 8.5 66 10-75 176-254 (404)
165 PRK14497 putative molybdopteri 73.1 10 0.00022 41.5 7.3 66 10-76 179-258 (546)
166 COG0521 MoaB Molybdopterin bio 72.8 8.8 0.00019 35.7 5.8 66 12-77 9-81 (169)
167 cd06295 PBP1_CelR Ligand bindi 72.0 23 0.0005 33.6 8.8 61 12-72 5-73 (275)
168 cd06281 PBP1_LacI_like_5 Ligan 71.9 20 0.00043 33.9 8.4 58 13-72 2-64 (269)
169 PRK01231 ppnK inorganic polyph 71.9 13 0.00027 37.5 7.2 84 11-134 5-96 (295)
170 COG4242 CphB Cyanophycinase an 71.3 11 0.00023 37.3 6.2 97 12-139 54-155 (293)
171 PRK14690 molybdopterin biosynt 71.0 13 0.00028 39.3 7.4 71 6-76 188-272 (419)
172 PRK13017 dihydroxy-acid dehydr 70.9 9.8 0.00021 41.9 6.5 66 9-74 46-131 (596)
173 cd00885 cinA Competence-damage 70.3 13 0.00028 34.3 6.3 63 13-75 2-70 (170)
174 PLN02935 Bifunctional NADH kin 69.6 12 0.00027 40.3 6.8 85 10-134 194-296 (508)
175 PRK02231 ppnK inorganic polyph 69.5 14 0.0003 36.9 6.8 65 33-134 4-76 (272)
176 cd06318 PBP1_ABC_sugar_binding 68.9 21 0.00045 33.9 7.8 58 13-72 2-64 (282)
177 PRK03708 ppnK inorganic polyph 68.8 14 0.0003 36.9 6.6 82 12-134 2-90 (277)
178 PRK02645 ppnK inorganic polyph 68.0 19 0.00041 36.4 7.5 59 11-72 4-66 (305)
179 PRK00911 dihydroxy-acid dehydr 67.8 14 0.00031 40.3 6.9 49 2-50 23-73 (552)
180 PRK14498 putative molybdopteri 66.9 15 0.00034 40.5 7.2 68 10-77 186-266 (633)
181 PF01513 NAD_kinase: ATP-NAD k 66.6 5.7 0.00012 39.5 3.4 21 114-134 90-110 (285)
182 cd06279 PBP1_LacI_like_3 Ligan 66.5 27 0.00059 33.5 8.1 60 13-72 2-65 (283)
183 cd06292 PBP1_LacI_like_10 Liga 66.5 35 0.00076 32.2 8.8 58 13-72 2-64 (273)
184 TIGR00110 ilvD dihydroxy-acid 66.3 19 0.00041 39.2 7.5 50 1-50 2-53 (535)
185 PF06283 ThuA: Trehalose utili 65.6 1.2E+02 0.0026 28.4 13.7 87 12-133 1-90 (217)
186 PLN02727 NAD kinase 65.5 17 0.00037 42.0 7.2 83 11-134 679-777 (986)
187 cd06267 PBP1_LacI_sugar_bindin 64.9 34 0.00074 31.5 8.2 58 13-72 2-64 (264)
188 PF07085 DRTGG: DRTGG domain; 64.8 7.8 0.00017 32.4 3.4 32 43-74 41-72 (105)
189 cd06301 PBP1_rhizopine_binding 64.7 29 0.00063 32.7 7.8 58 13-72 2-65 (272)
190 cd06310 PBP1_ABC_sugar_binding 64.6 29 0.00062 32.8 7.8 59 12-72 1-66 (273)
191 cd06282 PBP1_GntR_like_2 Ligan 64.6 29 0.00064 32.4 7.8 58 13-72 2-64 (266)
192 cd01545 PBP1_SalR Ligand-bindi 64.6 36 0.00077 31.9 8.4 58 13-72 2-65 (270)
193 PRK14491 putative bifunctional 63.3 23 0.00049 39.2 7.6 71 6-76 362-446 (597)
194 cd06274 PBP1_FruR Ligand bindi 63.1 36 0.00077 32.0 8.1 58 13-72 2-64 (264)
195 cd06277 PBP1_LacI_like_1 Ligan 62.7 39 0.00085 31.8 8.3 50 23-72 13-67 (268)
196 cd01536 PBP1_ABC_sugar_binding 62.7 38 0.00083 31.4 8.1 58 13-72 2-64 (267)
197 PRK13016 dihydroxy-acid dehydr 62.7 19 0.00042 39.5 6.7 73 2-74 33-126 (577)
198 cd01537 PBP1_Repressors_Sugar_ 62.6 37 0.0008 31.2 8.0 58 13-72 2-64 (264)
199 cd06273 PBP1_GntR_like_1 This 62.5 37 0.00081 31.8 8.1 58 13-72 2-64 (268)
200 cd01575 PBP1_GntR Ligand-bindi 62.2 40 0.00086 31.5 8.2 48 25-72 12-64 (268)
201 PRK06131 dihydroxy-acid dehydr 62.1 18 0.0004 39.7 6.4 73 2-74 29-122 (571)
202 cd01538 PBP1_ABC_xylose_bindin 62.0 37 0.0008 32.8 8.1 58 13-72 2-64 (288)
203 smart00852 MoCF_biosynth Proba 61.9 29 0.00063 30.1 6.7 49 28-76 17-70 (135)
204 cd06299 PBP1_LacI_like_13 Liga 61.7 38 0.00082 31.7 8.0 58 13-72 2-64 (265)
205 cd01542 PBP1_TreR_like Ligand- 61.6 45 0.00098 31.1 8.5 58 13-72 2-64 (259)
206 PRK14076 pnk inorganic polypho 61.6 21 0.00045 39.3 6.9 83 12-134 292-382 (569)
207 cd06271 PBP1_AglR_RafR_like Li 61.3 43 0.00094 31.2 8.3 60 13-72 2-68 (268)
208 PRK01372 ddl D-alanine--D-alan 61.3 46 0.00099 32.7 8.8 61 9-70 3-63 (304)
209 PLN02929 NADH kinase 61.2 24 0.00051 35.8 6.7 60 33-134 38-97 (301)
210 PRK12448 dihydroxy-acid dehydr 60.9 30 0.00064 38.4 7.8 49 2-50 25-75 (615)
211 PRK10355 xylF D-xylose transpo 60.9 46 0.00099 33.4 8.8 61 10-72 25-90 (330)
212 cd06283 PBP1_RegR_EndR_KdgR_li 60.5 43 0.00094 31.2 8.1 58 13-72 2-64 (267)
213 cd06298 PBP1_CcpA_like Ligand- 59.7 33 0.00071 32.1 7.2 58 13-72 2-64 (268)
214 cd06300 PBP1_ABC_sugar_binding 59.6 42 0.00091 31.7 7.9 59 12-72 1-69 (272)
215 COG0061 nadF NAD kinase [Coenz 58.7 27 0.00059 34.7 6.6 83 12-134 2-89 (281)
216 PF13407 Peripla_BP_4: Peripla 58.4 34 0.00074 32.1 7.0 74 24-133 10-89 (257)
217 cd06284 PBP1_LacI_like_6 Ligan 58.2 51 0.0011 30.7 8.2 58 13-72 2-64 (267)
218 cd06322 PBP1_ABC_sugar_binding 58.1 49 0.0011 31.0 8.1 59 12-72 1-64 (267)
219 cd01540 PBP1_arabinose_binding 57.7 44 0.00095 31.9 7.8 57 13-72 2-63 (289)
220 TIGR02634 xylF D-xylose ABC tr 57.1 49 0.0011 32.4 8.2 50 23-72 9-63 (302)
221 cd06309 PBP1_YtfQ_like Peripla 57.0 40 0.00086 31.9 7.3 58 13-72 2-64 (273)
222 cd06320 PBP1_allose_binding Pe 56.5 58 0.0013 30.8 8.3 58 13-72 2-66 (275)
223 COG4285 Uncharacterized conser 56.4 14 0.00031 35.8 3.9 25 115-144 73-97 (253)
224 COG1570 XseA Exonuclease VII, 55.9 33 0.00071 36.5 6.9 63 6-75 131-206 (440)
225 cd06321 PBP1_ABC_sugar_binding 55.9 47 0.001 31.3 7.6 58 13-72 2-66 (271)
226 COG4977 Transcriptional regula 55.8 23 0.00049 36.4 5.5 27 114-140 98-124 (328)
227 PLN02493 probable peroxisomal 55.8 41 0.0009 35.0 7.5 86 33-145 214-304 (367)
228 PF09832 DUF2059: Uncharacteri 55.0 21 0.00046 27.0 4.1 28 377-404 4-31 (64)
229 cd06319 PBP1_ABC_sugar_binding 55.0 71 0.0015 30.1 8.6 58 13-72 2-64 (277)
230 cd05014 SIS_Kpsf KpsF-like pro 54.6 44 0.00095 28.2 6.5 19 114-132 64-82 (128)
231 cd06324 PBP1_ABC_sugar_binding 54.5 67 0.0014 31.3 8.6 59 13-72 2-67 (305)
232 cd06302 PBP1_LsrB_Quorum_Sensi 53.5 61 0.0013 31.5 8.1 58 13-72 2-65 (298)
233 cd06323 PBP1_ribose_binding Pe 53.3 51 0.0011 30.7 7.3 48 24-71 11-63 (268)
234 cd06278 PBP1_LacI_like_2 Ligan 52.8 86 0.0019 29.1 8.8 58 13-72 2-63 (266)
235 PRK03501 ppnK inorganic polyph 52.0 46 0.001 33.0 6.9 45 12-72 4-48 (264)
236 PF00532 Peripla_BP_1: Peripla 52.0 40 0.00088 33.0 6.6 59 11-72 2-65 (279)
237 COG4090 Uncharacterized protei 51.5 44 0.00095 29.9 5.9 19 123-143 115-133 (154)
238 PRK03673 hypothetical protein; 51.4 49 0.0011 34.8 7.3 65 10-74 1-71 (396)
239 cd06308 PBP1_sensor_kinase_lik 50.6 61 0.0013 30.6 7.4 58 13-72 2-65 (270)
240 COG1609 PurR Transcriptional r 50.5 88 0.0019 31.6 8.9 59 11-71 59-122 (333)
241 cd06285 PBP1_LacI_like_7 Ligan 50.4 84 0.0018 29.5 8.3 58 13-72 2-64 (265)
242 cd01544 PBP1_GalR Ligand-bindi 50.3 78 0.0017 30.0 8.2 57 12-71 1-60 (270)
243 cd06315 PBP1_ABC_sugar_binding 50.3 1.1E+02 0.0025 29.2 9.3 59 12-72 2-65 (280)
244 cd01539 PBP1_GGBP Periplasmic 50.1 73 0.0016 31.1 8.1 59 12-72 1-66 (303)
245 cd06306 PBP1_TorT-like TorT-li 50.0 91 0.002 29.6 8.6 59 12-72 1-66 (268)
246 PRK10653 D-ribose transporter 49.8 1.1E+02 0.0024 29.6 9.2 61 10-72 26-91 (295)
247 cd06297 PBP1_LacI_like_12 Liga 49.8 76 0.0017 30.1 8.0 58 13-72 2-64 (269)
248 PRK03604 moaC bifunctional mol 49.7 62 0.0013 33.0 7.6 66 12-77 157-229 (312)
249 cd01541 PBP1_AraR Ligand-bindi 49.5 95 0.0021 29.2 8.6 58 13-72 2-64 (273)
250 PRK10014 DNA-binding transcrip 49.3 92 0.002 30.6 8.8 60 11-72 65-129 (342)
251 TIGR00200 cinA_nterm competenc 49.1 52 0.0011 34.8 7.2 63 12-74 2-70 (413)
252 cd06316 PBP1_ABC_sugar_binding 48.7 84 0.0018 30.2 8.2 58 13-72 2-65 (294)
253 cd06314 PBP1_tmGBP Periplasmic 48.5 75 0.0016 30.0 7.7 57 13-72 2-64 (271)
254 cd06317 PBP1_ABC_sugar_binding 48.1 82 0.0018 29.5 7.9 49 24-72 12-65 (275)
255 PRK11303 DNA-binding transcrip 47.6 1.1E+02 0.0024 29.8 9.0 60 11-72 62-126 (328)
256 PLN02699 Bifunctional molybdop 46.7 66 0.0014 36.1 7.8 66 10-75 181-261 (659)
257 PLN02979 glycolate oxidase 46.5 73 0.0016 33.2 7.6 86 33-145 213-303 (366)
258 PRK14987 gluconate operon tran 46.1 1.1E+02 0.0023 30.2 8.6 59 11-71 64-127 (331)
259 cd06296 PBP1_CatR_like Ligand- 45.9 96 0.0021 29.0 8.0 58 13-72 2-64 (270)
260 cd06289 PBP1_MalI_like Ligand- 45.8 1.1E+02 0.0024 28.4 8.4 58 13-72 2-64 (268)
261 TIGR00147 lipid kinase, YegS/R 45.7 96 0.0021 30.4 8.2 61 11-72 2-66 (293)
262 PRK14075 pnk inorganic polypho 44.9 81 0.0018 30.9 7.4 37 30-72 14-50 (256)
263 cd06312 PBP1_ABC_sugar_binding 44.9 94 0.002 29.4 7.8 49 24-72 12-66 (271)
264 cd06291 PBP1_Qymf_like Ligand 44.5 84 0.0018 29.4 7.3 58 13-72 2-64 (265)
265 cd01574 PBP1_LacI Ligand-bindi 43.6 1.4E+02 0.003 27.8 8.6 58 13-72 2-65 (264)
266 PRK08211 putative dehydratase; 43.5 51 0.0011 36.8 6.2 49 2-50 53-115 (655)
267 PF01070 FMN_dh: FMN-dependent 43.5 37 0.0008 35.1 4.9 84 34-146 216-306 (356)
268 PF10087 DUF2325: Uncharacteri 42.7 1.7E+02 0.0036 24.0 7.9 41 32-72 13-57 (97)
269 PRK10703 DNA-binding transcrip 42.7 1.3E+02 0.0027 29.7 8.6 60 11-72 60-124 (341)
270 PRK12419 riboflavin synthase s 42.2 71 0.0015 29.4 6.0 58 11-71 11-77 (158)
271 PRK03670 competence damage-ind 42.2 88 0.0019 30.8 7.1 62 13-74 3-71 (252)
272 cd06270 PBP1_GalS_like Ligand 41.7 1.4E+02 0.0031 27.9 8.4 58 13-72 2-64 (268)
273 COG0129 IlvD Dihydroxyacid deh 41.4 56 0.0012 36.0 6.0 44 7-50 39-84 (575)
274 cd06313 PBP1_ABC_sugar_binding 41.1 1.3E+02 0.0028 28.6 8.1 49 24-72 11-64 (272)
275 PF08998 Epsilon_antitox: Bact 41.0 31 0.00068 28.5 3.1 31 385-415 55-85 (89)
276 TIGR02417 fruct_sucro_rep D-fr 40.9 1.6E+02 0.0035 28.7 9.0 60 11-72 61-125 (327)
277 PRK04761 ppnK inorganic polyph 40.9 30 0.00065 34.0 3.6 21 114-134 39-59 (246)
278 cd06294 PBP1_ycjW_transcriptio 40.8 1.3E+02 0.0029 28.0 8.0 49 24-72 16-69 (270)
279 TIGR01481 ccpA catabolite cont 39.8 1.5E+02 0.0033 28.9 8.6 60 11-72 60-124 (329)
280 PRK00286 xseA exodeoxyribonucl 39.6 78 0.0017 33.3 6.8 62 6-74 131-204 (438)
281 PRK00561 ppnK inorganic polyph 39.3 33 0.00072 33.9 3.7 21 114-134 47-67 (259)
282 KOG0538 Glycolate oxidase [Ene 38.0 80 0.0017 32.3 6.1 82 34-144 214-302 (363)
283 cd06293 PBP1_LacI_like_11 Liga 37.6 2.1E+02 0.0044 26.9 8.8 58 13-72 2-64 (269)
284 cd06311 PBP1_ABC_sugar_binding 37.5 1.5E+02 0.0032 28.0 7.9 58 13-72 2-69 (274)
285 TIGR03432 yjhG_yagF probable d 37.4 80 0.0017 35.2 6.5 49 2-50 47-109 (640)
286 PRK14571 D-alanyl-alanine synt 36.8 1.5E+02 0.0033 29.1 8.1 59 12-70 2-60 (299)
287 cd01543 PBP1_XylR Ligand-bindi 36.4 1.4E+02 0.003 28.0 7.5 56 12-71 1-58 (265)
288 PF02514 CobN-Mg_chel: CobN/Ma 36.4 91 0.002 37.2 7.2 63 9-72 70-140 (1098)
289 PF02601 Exonuc_VII_L: Exonucl 36.2 78 0.0017 31.7 5.9 61 6-73 10-86 (319)
290 PF05368 NmrA: NmrA-like famil 36.1 1.8E+02 0.0039 27.1 8.1 40 33-73 35-74 (233)
291 PRK00549 competence damage-ind 36.0 1.1E+02 0.0024 32.2 7.2 63 12-74 2-70 (414)
292 COG1929 Glycerate kinase [Carb 35.6 59 0.0013 33.9 4.8 18 114-131 306-323 (378)
293 TIGR00288 conserved hypothetic 35.6 1.5E+02 0.0033 27.3 7.1 62 32-131 69-136 (160)
294 cd06287 PBP1_LacI_like_8 Ligan 35.4 1.4E+02 0.003 28.6 7.3 48 23-72 18-65 (269)
295 cd06167 LabA_like LabA_like pr 35.3 1.4E+02 0.0031 25.9 6.8 66 31-133 54-132 (149)
296 PRK15408 autoinducer 2-binding 35.3 1.6E+02 0.0035 29.8 8.0 59 11-71 24-88 (336)
297 cd06288 PBP1_sucrose_transcrip 35.2 77 0.0017 29.6 5.4 59 13-72 2-65 (269)
298 PRK08811 uroporphyrinogen-III 35.1 76 0.0017 31.2 5.5 41 32-72 31-78 (266)
299 PRK11914 diacylglycerol kinase 35.0 1.7E+02 0.0038 28.9 8.2 61 11-72 9-73 (306)
300 PF09075 STb_secrete: Heat-sta 34.7 8.9 0.00019 27.1 -0.8 17 126-142 31-47 (48)
301 cd01391 Periplasmic_Binding_Pr 34.1 1.4E+02 0.003 26.8 6.8 59 13-72 2-67 (269)
302 COG2185 Sbm Methylmalonyl-CoA 33.5 1E+02 0.0022 28.0 5.5 59 8-71 10-71 (143)
303 cd06272 PBP1_hexuronate_repres 33.5 1.7E+02 0.0037 27.2 7.5 57 13-72 2-60 (261)
304 COG0655 WrbA Multimeric flavod 33.1 1.3E+02 0.0029 28.1 6.6 57 12-70 3-82 (207)
305 PLN02404 6,7-dimethyl-8-ribity 32.9 1.1E+02 0.0025 27.5 5.7 92 10-130 7-110 (141)
306 PTZ00254 40S ribosomal protein 32.7 1.3E+02 0.0028 29.8 6.5 17 115-131 132-148 (249)
307 PRK09701 D-allose transporter 32.5 2.3E+02 0.005 27.7 8.5 60 11-72 25-91 (311)
308 PF00781 DAGK_cat: Diacylglyce 31.3 1.4E+02 0.0031 25.4 6.1 58 12-72 1-63 (130)
309 PRK06852 aldolase; Validated 31.2 2.1E+02 0.0045 29.1 7.9 41 34-74 193-240 (304)
310 cd03332 LMO_FMN L-Lactate 2-mo 31.2 1.9E+02 0.004 30.4 7.8 86 33-145 243-333 (383)
311 TIGR02637 RhaS rhamnose ABC tr 30.7 1.8E+02 0.004 28.0 7.4 49 24-72 10-65 (302)
312 PRK11197 lldD L-lactate dehydr 30.4 1.7E+02 0.0038 30.6 7.4 82 34-144 236-324 (381)
313 PF00994 MoCF_biosynth: Probab 29.8 47 0.001 29.2 2.7 48 27-76 15-69 (144)
314 PRK01185 ppnK inorganic polyph 29.1 1.6E+02 0.0035 29.2 6.7 55 12-72 2-61 (271)
315 PRK09932 glycerate kinase II; 28.7 85 0.0018 32.9 4.8 18 114-131 306-323 (381)
316 cd06280 PBP1_LacI_like_4 Ligan 28.6 1.1E+02 0.0024 28.7 5.3 58 13-72 2-64 (263)
317 PF06223 Phage_tail_T: Minor t 28.6 58 0.0012 27.9 2.9 26 379-404 7-32 (103)
318 TIGR00045 glycerate kinase. Th 28.1 81 0.0018 33.0 4.5 18 114-131 305-322 (375)
319 cd02922 FCB2_FMN Flavocytochro 28.0 2.1E+02 0.0046 29.4 7.5 39 33-71 203-242 (344)
320 cd06307 PBP1_uncharacterized_s 27.7 1.3E+02 0.0028 28.4 5.7 59 12-72 1-67 (275)
321 PF03358 FMN_red: NADPH-depend 27.5 84 0.0018 27.3 4.0 58 12-70 2-77 (152)
322 PRK08883 ribulose-phosphate 3- 26.7 1.1E+02 0.0024 29.4 4.8 40 33-72 97-137 (220)
323 PRK00061 ribH 6,7-dimethyl-8-r 25.7 2.2E+02 0.0048 26.0 6.4 60 9-71 11-79 (154)
324 COG0710 AroD 3-dehydroquinate 25.5 4.5E+02 0.0097 25.7 8.8 112 14-135 60-187 (231)
325 COG4917 EutP Ethanolamine util 25.1 79 0.0017 28.5 3.2 49 9-61 90-141 (148)
326 PRK04885 ppnK inorganic polyph 25.1 78 0.0017 31.4 3.6 43 12-72 2-44 (265)
327 cd06290 PBP1_LacI_like_9 Ligan 25.1 1.5E+02 0.0031 27.8 5.4 58 13-72 2-64 (265)
328 PRK08227 autoinducer 2 aldolas 24.2 2.9E+02 0.0062 27.5 7.4 61 10-74 141-202 (264)
329 cd06304 PBP1_BmpA_like Peripla 24.1 1.3E+02 0.0029 28.3 5.0 60 12-72 1-65 (260)
330 cd06275 PBP1_PurR Ligand-bindi 23.8 1.5E+02 0.0033 27.6 5.3 58 13-72 2-64 (269)
331 PF13380 CoA_binding_2: CoA bi 23.8 1.9E+02 0.0042 24.6 5.4 91 31-135 16-114 (116)
332 PRK10423 transcriptional repre 23.8 1.8E+02 0.0038 28.4 5.9 60 11-72 57-121 (327)
333 PRK11790 D-3-phosphoglycerate 23.7 2.6E+02 0.0057 29.4 7.4 66 1-77 1-67 (409)
334 PLN02699 Bifunctional molybdop 23.6 2.9E+02 0.0063 31.1 8.1 72 6-77 454-538 (659)
335 PF00885 DMRL_synthase: 6,7-di 23.5 1E+02 0.0022 27.8 3.7 59 10-71 3-70 (144)
336 PRK15395 methyl-galactoside AB 23.1 3.8E+02 0.0083 26.6 8.2 61 10-72 24-90 (330)
337 PRK09147 succinyldiaminopimela 23.0 2.8E+02 0.0061 28.2 7.4 43 34-78 130-179 (396)
338 PRK10936 TMAO reductase system 22.8 4.6E+02 0.0099 26.2 8.8 60 11-72 47-113 (343)
339 TIGR02405 trehalos_R_Ecol treh 22.5 1.8E+02 0.0038 28.4 5.6 60 11-72 60-124 (311)
340 COG0036 Rpe Pentose-5-phosphat 22.3 2E+02 0.0042 28.0 5.6 39 34-72 101-140 (220)
341 TIGR01715 phage_lam_T phage ta 21.7 83 0.0018 26.8 2.6 21 384-404 7-27 (100)
342 PF04659 Arch_fla_DE: Archaeal 21.7 63 0.0014 27.4 1.9 49 368-416 6-58 (99)
343 PF03698 UPF0180: Uncharacteri 21.3 1.3E+02 0.0029 24.5 3.6 32 35-73 14-45 (80)
344 PRK08745 ribulose-phosphate 3- 21.2 2.1E+02 0.0045 27.7 5.6 40 33-72 101-141 (223)
345 TIGR01196 edd 6-phosphoglucona 21.0 3.3E+02 0.0072 30.4 7.6 40 9-48 63-104 (601)
346 PRK10339 DNA-binding transcrip 21.0 5.3E+02 0.012 25.1 8.8 58 11-72 64-123 (327)
347 TIGR02826 RNR_activ_nrdG3 anae 20.9 1.4E+02 0.0031 26.7 4.2 11 63-73 61-71 (147)
348 cd06303 PBP1_LuxPQ_Quorum_Sens 20.7 3.2E+02 0.007 25.9 7.0 59 13-72 2-69 (280)
349 PRK05632 phosphate acetyltrans 20.6 1.2E+02 0.0025 34.2 4.3 39 33-74 238-282 (684)
350 PF02110 HK: Hydroxyethylthiaz 20.5 4.8E+02 0.01 25.7 8.0 51 10-72 8-58 (246)
351 PRK05839 hypothetical protein; 20.4 3.6E+02 0.0078 27.3 7.6 37 34-70 122-162 (374)
352 PRK08057 cobalt-precorrin-6x r 20.3 6.1E+02 0.013 24.8 8.8 95 10-131 2-99 (248)
No 1
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=100.00 E-value=6.4e-49 Score=372.40 Aligned_cols=236 Identities=34% Similarity=0.542 Sum_probs=205.5
Q ss_pred CCcEEEEEccCcC----CcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccC
Q 014368 9 ILPRVLIVSRRSV----RKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAET 84 (426)
Q Consensus 9 ~~P~igI~~~~~~----~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~ 84 (426)
.+|+|||+++... +.+..+.|....|++++..+|+.|+++|...+.+.+...++.+||||||||.|+||..|++++
T Consensus 2 ~kpvIGIt~~~~~~~~~~~~~~~~~~~~~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg~nV~P~~YGee~ 81 (243)
T COG2071 2 SKPVIGITADLIQEIVGFDGNPWSYLPYDYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGGSNVDPSLYGEEP 81 (243)
T ss_pred CCCEEEEecchhccccccCCccHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCCCcCCHHHcCCCC
Confidence 5899999987544 355567899999999999999999999977778888889999999999999999999999988
Q ss_pred CCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCccee
Q 014368 85 SNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVV 164 (426)
Q Consensus 85 ~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~ 164 (426)
+ +....++++||.+|+.+++.|+++++||||||||+|+||+++||++++++....+ ...
T Consensus 82 ~--------------~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL~q~i~~~~~-------~~~ 140 (243)
T COG2071 82 S--------------EKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVALGGTLYQDISEQPG-------HID 140 (243)
T ss_pred C--------------cccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHHhcCeeehhhhcccc-------ccc
Confidence 5 4566789999999999999999999999999999999999999999998853222 345
Q ss_pred ecccCCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCC
Q 014368 165 HIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGK 244 (426)
Q Consensus 165 H~~~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~ 244 (426)
|...+...-..|.|.+.++|.|.++++.. .+.|||+|+|++++|+++|+++|+++||+||||++++ +.
T Consensus 141 H~~~~~~~~~~H~V~i~~~s~La~i~g~~------~~~VNS~HhQaIk~La~~L~V~A~a~DG~VEAie~~~------~~ 208 (243)
T COG2071 141 HRQPNPVHIESHEVHIEPGSKLAKILGES------EFMVNSFHHQAIKKLAPGLVVEARAPDGTVEAVEVKN------DA 208 (243)
T ss_pred ccCCCCcccceeEEEecCCccHHHhcCcc------ceeecchHHHHHHHhCCCcEEEEECCCCcEEEEEecC------Cc
Confidence 55555544558999999999999999862 2899999999999999999999999999999999985 48
Q ss_pred cEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 014368 245 FIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAY 283 (426)
Q Consensus 245 ~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~~ 283 (426)
|++|||||||+..... +.+..||++|+++|+.+
T Consensus 209 fvlGVQWHPE~~~~~~------~~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 209 FVLGVQWHPEYLVDTN------PLSLALFEAFVNACKKH 241 (243)
T ss_pred eEEEEecChhhhccCC------hHHHHHHHHHHHHHHhh
Confidence 9999999999987653 23689999999999865
No 2
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=100.00 E-value=2.6e-42 Score=335.97 Aligned_cols=237 Identities=27% Similarity=0.408 Sum_probs=187.1
Q ss_pred CCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCC-CCCCCcccccCCC
Q 014368 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGE-DIDPSLYEAETSN 86 (426)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~le~~DGVILsGG~-didp~~y~~~~~~ 86 (426)
.+|+|||+++.........+++...|++++..+|+.|+++|+.. +.+.+.+.++.+|||||+||+ ||+|..|++++.
T Consensus 6 ~~P~Igi~~~~~~~~~~~~~~~~~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~- 84 (254)
T PRK11366 6 NNPVIGVVMCRNRLKGHATQTLQEKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGD- 84 (254)
T ss_pred CCCEEEEeCCCcccCcchHHHHHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCC-
Confidence 57999999865433333357899999999999999999999754 345566667789999999996 999999998652
Q ss_pred CChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeec
Q 014368 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHI 166 (426)
Q Consensus 87 ~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~ 166 (426)
....++.||.+++++++.++++++||||||+|||+||+++||++++++. +.. ....|.
T Consensus 85 ---------------~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~~~~-~~~------~~~~h~ 142 (254)
T PRK11366 85 ---------------EPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHRKLC-EQP------ELLEHR 142 (254)
T ss_pred ---------------CCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEeeccc-ccc------cccccc
Confidence 1234788999999999999999999999999999999999999998852 111 001121
Q ss_pred ccC-----CCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCC
Q 014368 167 DYD-----NYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPA 241 (426)
Q Consensus 167 ~~~-----~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~ 241 (426)
... ...+..|.|.+.+++.+..+++.. ..+.||++|+|+|+.+|++++++|+++||.||||++++
T Consensus 143 ~~~~~~~~~~~~~~h~v~~~~~s~l~~i~~~~-----~~~~Vns~H~q~V~~l~~gl~v~A~s~dg~ieAie~~~----- 212 (254)
T PRK11366 143 EDPELPVEQQYAPSHEVQVEEGGLLSALLPEC-----SNFWVNSLHGQGAKVVSPRLRVEARSPDGLVEAVSVIN----- 212 (254)
T ss_pred cCCccccccccCCceEEEECCCCcHHHhcCCC-----ceEEeehHHHHHHhhcccceEEEEEcCCCcEEEEEeCC-----
Confidence 100 012346899999999888887421 26889999999999999999999999999999999986
Q ss_pred CCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHHHHHH
Q 014368 242 EGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQK 285 (426)
Q Consensus 242 ~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~~~~ 285 (426)
+++++|||||||+..++.+. ..+||++|+++|+++..
T Consensus 213 -~~~~~GVQwHPE~~~~~~~~------~~~lf~~fv~~~~~~~~ 249 (254)
T PRK11366 213 -HPFALGVQWHPEWNSSEYAL------SRILFEGFITACQHHIA 249 (254)
T ss_pred -CCCEEEEEeCCCcCCCCCch------HHHHHHHHHHHHHHHHH
Confidence 35679999999998875443 35899999999987654
No 3
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=100.00 E-value=6.4e-43 Score=332.89 Aligned_cols=210 Identities=39% Similarity=0.544 Sum_probs=159.2
Q ss_pred cEEEEEccCcC-----CcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCC-CCCCCcccccC
Q 014368 11 PRVLIVSRRSV-----RKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGE-DIDPSLYEAET 84 (426)
Q Consensus 11 P~igI~~~~~~-----~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~-didp~~y~~~~ 84 (426)
|+|||+++... ....-.+|+..+|+++++++|+.|+++|+..+.+.+.+.++.+||||||||. ||+|..|++++
T Consensus 1 PvIGI~~~~~~~~~~~~~~~~~~~i~~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~ 80 (217)
T PF07722_consen 1 PVIGITAQPSESDSSDFPGYPRSYIAASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEEP 80 (217)
T ss_dssp -EEEEE-EE----SHHHHHC-SEEEEHHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT---
T ss_pred CEEEEeCCccccccCCcCchhHHHHhHHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcc
Confidence 89999998742 1223468999999999999999999999998889999999999999999999 99999999876
Q ss_pred CCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCccee
Q 014368 85 SNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVV 164 (426)
Q Consensus 85 ~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~ 164 (426)
. +.....++.||.+|+.+++.++++++||||||+|||+||+++||+++++.....+ ...
T Consensus 81 ~--------------~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~~GGtl~q~~~~~~~-------~~~ 139 (217)
T PF07722_consen 81 S--------------PESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNVAFGGTLYQDIPDQPG-------FPD 139 (217)
T ss_dssp B--------------TTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHHHCCSSEESCCCCSS--------EEE
T ss_pred c--------------ccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHHhCCCceeecccCcC-------ccc
Confidence 4 3344568899999999999999999999999999999999999999998743221 111
Q ss_pred ecccCCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCC
Q 014368 165 HIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGK 244 (426)
Q Consensus 165 H~~~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~ 244 (426)
|.... .....|.|.+.++|.|.++++.. .+.|||+|+|+|+.|+++|+++|++.||.||||+..+ ++
T Consensus 140 ~~~~~-~~~~~h~v~i~~~s~l~~~~~~~------~~~vns~Hhq~v~~l~~~l~v~A~s~Dg~iEaie~~~------~~ 206 (217)
T PF07722_consen 140 HRQHP-QDFPSHPVRIVPGSLLAKILGSE------EIEVNSFHHQAVKPLGEGLRVTARSPDGVIEAIESPE------HK 206 (217)
T ss_dssp CEE-S--TS--EEEEEETTSTCCCTSHHC------TEEEEEEECEEECCHHCCEEEEEEECTSSEEEEEECC------ES
T ss_pred ccccc-cccccccceeccCchHHHHhCcC------cceeecchhhhhhccCCCceEEEEecCCcEEEEEEcC------CC
Confidence 21111 13468999999999999999732 6899999999999999999999999999999999986 35
Q ss_pred -cEEEEcccCC
Q 014368 245 -FIMGLQFHPE 254 (426)
Q Consensus 245 -~i~GvQFHPE 254 (426)
|++|||||||
T Consensus 207 ~~~~GvQwHPE 217 (217)
T PF07722_consen 207 YPILGVQWHPE 217 (217)
T ss_dssp S-EEEESS-CC
T ss_pred CCEEEEEeCCC
Confidence 8999999999
No 4
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=100.00 E-value=1.8e-32 Score=255.62 Aligned_cols=185 Identities=44% Similarity=0.724 Sum_probs=154.6
Q ss_pred EEEEccCcCCcc--cccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChh
Q 014368 13 VLIVSRRSVRKN--KFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (426)
Q Consensus 13 igI~~~~~~~~~--~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e 90 (426)
|||+++.....+ ...+++..+++++++.+|+.++++|++.+.+.+...++.+||||||||++.+|..|+++..
T Consensus 1 ~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~----- 75 (189)
T cd01745 1 IGITARLREEEGGYERRDYLNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPH----- 75 (189)
T ss_pred CEEcCccccccCccHHHHHHHHHHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCC-----
Confidence 578887655443 3489999999999999999999999887766666667789999999999888888876542
Q ss_pred HHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCC
Q 014368 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDN 170 (426)
Q Consensus 91 ~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (426)
+.....++.++..+..+++.+++.++||||||+|||+|+.++||++.++.
T Consensus 76 ---------~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~~--------------------- 125 (189)
T cd01745 76 ---------PELGPIDPERDAFELALLRAALERGKPILGICRGMQLLNVALGGTLYQDI--------------------- 125 (189)
T ss_pred ---------cccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchHHHHHHHhCCeEEcCC---------------------
Confidence 23344567788888999999999999999999999999999999875420
Q ss_pred CCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEc
Q 014368 171 YDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQ 250 (426)
Q Consensus 171 ~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQ 250 (426)
.|+++|++.|.++|++++++|+++||.|+|+++++ +.+++|+|
T Consensus 126 -------------------------------~v~~~H~~~v~~~~~~~~vla~~~d~~vea~~~~~------~~~~~gvQ 168 (189)
T cd01745 126 -------------------------------RVNSLHHQAIKRLADGLRVEARAPDGVIEAIESPD------RPFVLGVQ 168 (189)
T ss_pred -------------------------------ceechHHHHHhhcCCCCEEEEECCCCcEEEEEeCC------CCeEEEEe
Confidence 37789999999999999999999999999999984 36899999
Q ss_pred ccCCccCC--CCCCCCCCCCcHHHHHHHH
Q 014368 251 FHPERMRR--PDSDEFDYPGCPSAYQEFV 277 (426)
Q Consensus 251 FHPE~~~~--~~~~~~d~~~~~~lf~~Fv 277 (426)
||||+..+ +.+ .++|++|+
T Consensus 169 fHPE~~~~~~~~~--------~~if~~f~ 189 (189)
T cd01745 169 WHPEWLADTDPDS--------LKLFEAFV 189 (189)
T ss_pred cCCCcCcccCchH--------hHHHHHhC
Confidence 99999887 333 68999984
No 5
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.98 E-value=1e-31 Score=250.33 Aligned_cols=182 Identities=18% Similarity=0.280 Sum_probs=141.0
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhH
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~ 91 (426)
|+|+++.++++++++++ |.+.|+.+.+++++. +.+++.. ..+|||||+|||+ +|...
T Consensus 2 il~idn~Dsft~nl~~~--------l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iils~GPg-~p~~~----------- 59 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQY--------FCELGADVLVKRNDALTLADIDA--LKPQKIVISPGPC-TPDEA----------- 59 (187)
T ss_pred EEEEECCCccHHHHHHH--------HHHCCCcEEEEeCCCCCHHHHHh--cCCCEEEEcCCCC-ChHHC-----------
Confidence 89999999988776554 677899999999874 4555543 2689999999985 34211
Q ss_pred HHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCC
Q 014368 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNY 171 (426)
Q Consensus 92 ~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (426)
..+..+++. ++.++|+||||+|||+|+.++||++.+....+.
T Consensus 60 -------------------~~~~~~~~~-~~~~~PiLGIClG~Q~la~a~Gg~v~~~~~~~~------------------ 101 (187)
T PRK08007 60 -------------------GISLDVIRH-YAGRLPILGVCLGHQAMAQAFGGKVVRAAKVMH------------------ 101 (187)
T ss_pred -------------------CccHHHHHH-hcCCCCEEEECHHHHHHHHHcCCEEEeCCCccc------------------
Confidence 112345555 467899999999999999999999988653222
Q ss_pred CCceEEEEEecCCcccccccccccccceEEEEecccccchh--ccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEE
Q 014368 172 DGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGL 249 (426)
Q Consensus 172 ~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~--~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~Gv 249 (426)
|..+++.... +.++..++. .+.|++||+++|+ .+|++++++|+++||.|+|+++++ .+++||
T Consensus 102 -g~~~~v~~~~-~~l~~~~~~-------~~~v~~~H~~~v~~~~lp~~~~v~a~~~~~~i~a~~~~~-------~~i~Gv 165 (187)
T PRK08007 102 -GKTSPITHNG-EGVFRGLAN-------PLTVTRYHSLVVEPDSLPACFEVTAWSETREIMGIRHRQ-------WDLEGV 165 (187)
T ss_pred -CCceEEEECC-CCcccCCCC-------CcEEEEcchhEEccCCCCCCeEEEEEeCCCcEEEEEeCC-------CCEEEE
Confidence 2355666543 346655554 5789999999995 799999999999999999999986 789999
Q ss_pred cccCCccCCCCCCCCCCCCcHHHHHHHHH
Q 014368 250 QFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (426)
Q Consensus 250 QFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (426)
|||||+..+..+ ..+|++|++
T Consensus 166 QfHPE~~~t~~G--------~~il~nFl~ 186 (187)
T PRK08007 166 QFHPESILSEQG--------HQLLANFLH 186 (187)
T ss_pred EeCCcccCCcch--------HHHHHHHhh
Confidence 999999887766 599999985
No 6
>PRK06186 hypothetical protein; Validated
Probab=99.97 E-value=1.1e-30 Score=249.46 Aligned_cols=174 Identities=17% Similarity=0.249 Sum_probs=135.9
Q ss_pred hcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHH
Q 014368 60 SFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNV 139 (426)
Q Consensus 60 ~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLav 139 (426)
.|+.+|||+++||-+.. +- ...+.++++|+++++|+||||+|||++.+
T Consensus 50 ~l~~~dgilvpgGfg~r----g~----------------------------~Gki~ai~~Are~~iP~LGIClGmQ~avI 97 (229)
T PRK06186 50 DLAGFDGIWCVPGSPYR----ND----------------------------DGALTAIRFARENGIPFLGTCGGFQHALL 97 (229)
T ss_pred hHhhCCeeEeCCCCCcc----cH----------------------------hHHHHHHHHHHHcCCCeEeechhhHHHHH
Confidence 47789999999994310 00 12367899999999999999999999888
Q ss_pred HhCCcc--cccch-hhhcccCCCCcceeecccCCCCCceEEEEEecCCccccccccccccc--ceEEEEecccccchhcc
Q 014368 140 ACGGTL--YQDIE-KEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEE--KMEIWVNSYHHQGVKRL 214 (426)
Q Consensus 140 a~GG~l--~~~~~-~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~--~~~~~Vns~H~~~V~~L 214 (426)
++++++ +++.+ .|+.+. +..++............|+|.+.++|.+.++++...+.+ +|+|.||+.|+|+++
T Consensus 98 e~arnv~g~~dA~s~E~~~~--~~~pvi~~~~~~~~~~~h~v~l~~~S~l~~iyg~~~i~erhrHryeVNs~h~q~i~-- 173 (229)
T PRK06186 98 EYARNVLGWADAAHAETDPE--GDRPVIAPLSCSLVEKTGDIRLRPGSLIARAYGTLEIEEGYHCRYGVNPEFVAALE-- 173 (229)
T ss_pred HHHhhhcCCcCCCcCCCCCC--CCCCEEEECccccccCceEEEECCCCHHHHHhCCCeeeeeccccEEECHHHHHHHh--
Confidence 887765 56654 455422 234455444333334468999999999999998764443 478899999999997
Q ss_pred CCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 014368 215 AQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIA 282 (426)
Q Consensus 215 p~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~ 282 (426)
+++++++|+++||.||+||.++ ++|++|||||||+.+.+..+ .+||+.|+++|.+
T Consensus 174 ~~GL~vsa~s~DG~iEaiE~~~------hpf~lGVQwHPE~~s~~~~~-------~~LF~~Fv~aa~~ 228 (229)
T PRK06186 174 SGDLRVTGWDEDGDVRAVELPG------HPFFVATLFQPERAALAGRP-------PPLVRAFLRAARA 228 (229)
T ss_pred cCCeEEEEEcCCCCEEEEEeCC------CCcEEEEeCCCCccCCCCCC-------CHHHHHHHHHHhc
Confidence 6999999999999999999986 58999999999999876554 5899999999863
No 7
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.97 E-value=2.9e-30 Score=239.99 Aligned_cols=170 Identities=24% Similarity=0.374 Sum_probs=136.4
Q ss_pred HHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHH
Q 014368 34 HLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIE 113 (426)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e 113 (426)
..+++++.|+.+.++|++.+.+++... .+|||||+||+. +.|+...
T Consensus 14 l~~~l~~~g~~~~~~~~~~~~~~~~~~--~~~glii~Gg~~---~~~~~~~----------------------------- 59 (188)
T TIGR00888 14 IARRLRELGVYSELVPNTTPLEEIREK--NPKGIILSGGPS---SVYAENA----------------------------- 59 (188)
T ss_pred HHHHHHHcCCEEEEEeCCCCHHHHhhc--CCCEEEECCCCC---CcCcCCc-----------------------------
Confidence 456788999999999998777776542 367999999964 2232211
Q ss_pred HHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEecCCccccccccc
Q 014368 114 LRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDS 193 (426)
Q Consensus 114 ~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~~~~ 193 (426)
..+++.+++.++|+||||+|||+|+.++||++.+....++ ++.++.+.+.++++..+++
T Consensus 60 ~~~i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~~~~~~--------------------g~~~v~~~~~~~l~~~~~~- 118 (188)
T TIGR00888 60 PRADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAEKREY--------------------GKAELEILDEDDLFRGLPD- 118 (188)
T ss_pred hHHHHHHHhCCCCEEEECHHHHHHHHhcCceEecCCCccc--------------------eeEEEEEecCCHhhcCCCC-
Confidence 2456778889999999999999999999999886542222 3677888888888887765
Q ss_pred ccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHH
Q 014368 194 LEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAY 273 (426)
Q Consensus 194 ~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf 273 (426)
.+.++.+|++++..+|++++++|+++++.|+|+++++ .+++|+|||||++.++.+ .++|
T Consensus 119 ------~~~~~~~H~~~v~~l~~~~~vla~~~~~~v~a~~~~~-------~~~~g~QfHPE~~~~~~g--------~~i~ 177 (188)
T TIGR00888 119 ------ESTVWMSHGDKVKELPEGFKVLATSDNCPVAAMAHEE-------KPIYGVQFHPEVTHTEYG--------NELL 177 (188)
T ss_pred ------CcEEEeEccceeecCCCCCEEEEECCCCCeEEEEECC-------CCEEEEeeCCccCCChhh--------HHHH
Confidence 5678889999998899999999999999999999985 689999999999876555 5999
Q ss_pred HHHHHH
Q 014368 274 QEFVKA 279 (426)
Q Consensus 274 ~~Fv~a 279 (426)
++|+.+
T Consensus 178 ~~f~~~ 183 (188)
T TIGR00888 178 ENFVYD 183 (188)
T ss_pred HHHHHH
Confidence 999983
No 8
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.97 E-value=4.2e-30 Score=239.61 Aligned_cols=182 Identities=20% Similarity=0.282 Sum_probs=138.6
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhH
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~ 91 (426)
|+|+++.++++++++ +.+...|+.++++|++. +.+.+.+. .+|||||+|||+ +|..
T Consensus 2 il~id~~dsft~~~~--------~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iilsgGpg-~p~~------------ 58 (188)
T TIGR00566 2 VLMIDNYDSFTYNLV--------QYFCELGAEVVVKRNDSLTLQEIEAL--LPLLIVISPGPC-TPNE------------ 58 (188)
T ss_pred EEEEECCcCHHHHHH--------HHHHHcCCceEEEECCCCCHHHHHhc--CCCEEEEcCCCC-Chhh------------
Confidence 789999988766654 44777899999999753 45665442 589999999985 3321
Q ss_pred HHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCC
Q 014368 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNY 171 (426)
Q Consensus 92 ~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (426)
+..+..+++++ ..++||||||+|||+|+.++||++.+....+ |
T Consensus 59 ------------------~~~~~~~i~~~-~~~~PvLGIC~G~Qll~~~~GG~v~~~~~~~------------~------ 101 (188)
T TIGR00566 59 ------------------AGISLEAIRHF-AGKLPILGVCLGHQAMGQAFGGDVVRANTVM------------H------ 101 (188)
T ss_pred ------------------cchhHHHHHHh-ccCCCEEEECHHHHHHHHHcCCEEeeCCCcc------------c------
Confidence 01124677776 6789999999999999999999998753211 2
Q ss_pred CCceEEEEEecCCcccccccccccccceEEEEecccccch--hccCCCeEEEEEeCC-CeEEEEEeCCCCCCCCCCcEEE
Q 014368 172 DGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGV--KRLAQRFVPMAFAPD-GLIEGFYDPDAYNPAEGKFIMG 248 (426)
Q Consensus 172 ~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V--~~Lp~g~~vlA~s~d-G~Veaie~~~~~~~~~~~~i~G 248 (426)
|.+++|.+...+ ++..+.+ .+.++++|++.| ..+|++++++|++.+ |.|+|+++++ .++||
T Consensus 102 -g~~~~v~~~~~~-~~~~l~~-------~~~v~~~H~~~v~~~~l~~~~~v~a~s~~~~~v~a~~~~~-------~~i~g 165 (188)
T TIGR00566 102 -GKTSEIEHNGAG-IFRGLFN-------PLTATRYHSLVVEPETLPTCFPVTAWEEENIEIMAIRHRD-------LPLEG 165 (188)
T ss_pred -cceEEEEECCCc-cccCCCC-------CcEEEEcccceEecccCCCceEEEEEcCCCCEEEEEEeCC-------CCEEE
Confidence 346677765443 4444433 478999999998 479999999999976 4999999986 78999
Q ss_pred EcccCCccCCCCCCCCCCCCcHHHHHHHHH
Q 014368 249 LQFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (426)
Q Consensus 249 vQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (426)
+|||||+..++.+ ..+|++|++
T Consensus 166 vQfHPE~~~t~~G--------~~il~nfl~ 187 (188)
T TIGR00566 166 VQFHPESILSEQG--------HQLLANFLH 187 (188)
T ss_pred EEeCCCccCCccc--------HHHHHHHHh
Confidence 9999999888766 599999975
No 9
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.97 E-value=6.1e-30 Score=238.27 Aligned_cols=184 Identities=22% Similarity=0.356 Sum_probs=137.9
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhH
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~ 91 (426)
|+|+++.++++++ .++++.+.|..+.++|++. +.+.+. .+ .+|||||+|||. +| ++..
T Consensus 2 iliid~~d~f~~~--------i~~~l~~~g~~~~v~~~~~~~~~~~~-~~-~~dglIlsgGpg-~~--~d~~-------- 60 (189)
T PRK05670 2 ILLIDNYDSFTYN--------LVQYLGELGAEVVVYRNDEITLEEIE-AL-NPDAIVLSPGPG-TP--AEAG-------- 60 (189)
T ss_pred EEEEECCCchHHH--------HHHHHHHCCCcEEEEECCCCCHHHHH-hC-CCCEEEEcCCCC-Ch--HHcc--------
Confidence 7889888765544 4667888999999999874 444443 33 389999999974 23 1100
Q ss_pred HHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCC
Q 014368 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNY 171 (426)
Q Consensus 92 ~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (426)
....+++. +..++|+||||+|||+|+.++||++.+....+.
T Consensus 61 --------------------~~~~~l~~-~~~~~PvLGIClG~Qlla~alGg~v~~~~~~~~------------------ 101 (189)
T PRK05670 61 --------------------ISLELIRE-FAGKVPILGVCLGHQAIGEAFGGKVVRAKEIMH------------------ 101 (189)
T ss_pred --------------------hHHHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEecCCccc------------------
Confidence 01235554 457899999999999999999999887532111
Q ss_pred CCceEEEEEecCCcccccccccccccceEEEEecccccchh--ccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEE
Q 014368 172 DGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGL 249 (426)
Q Consensus 172 ~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~--~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~Gv 249 (426)
|..+++. ..+++++..++. .+.++++|++.|. .+|.+++++|++++|.|+|+++++ .++||+
T Consensus 102 -g~~~~v~-~~~~~l~~~~~~-------~~~v~~~H~~~v~~~~lp~~~~~la~s~~~~i~a~~~~~-------~~~~gv 165 (189)
T PRK05670 102 -GKTSPIE-HDGSGIFAGLPN-------PFTVTRYHSLVVDRESLPDCLEVTAWTDDGEIMGVRHKE-------LPIYGV 165 (189)
T ss_pred -CceeEEE-eCCCchhccCCC-------CcEEEcchhheeccccCCCceEEEEEeCCCcEEEEEECC-------CCEEEE
Confidence 2244555 446677776665 5788999999995 499999999999999999999975 679999
Q ss_pred cccCCccCCCCCCCCCCCCcHHHHHHHHHHH
Q 014368 250 QFHPERMRRPDSDEFDYPGCPSAYQEFVKAV 280 (426)
Q Consensus 250 QFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av 280 (426)
|||||+..++.+ .+||++|++.+
T Consensus 166 QfHPE~~~~~~g--------~~i~~~F~~~~ 188 (189)
T PRK05670 166 QFHPESILTEHG--------HKLLENFLELA 188 (189)
T ss_pred eeCCCcCCCcch--------HHHHHHHHHhh
Confidence 999999866544 69999999875
No 10
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.97 E-value=4.3e-30 Score=239.65 Aligned_cols=182 Identities=19% Similarity=0.301 Sum_probs=136.1
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCC-CChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhH
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~ 91 (426)
|+|+++.++++++++++ |.+.|+.+.+++++ .+.+++... .+|||||+|||. +|. +..
T Consensus 2 il~id~~dsf~~nl~~~--------l~~~~~~~~v~~~~~~~~~~~~~~--~~~~iilsgGP~-~~~--~~~-------- 60 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQY--------FCELGTEVMVKRNDELQLTDIEQL--APSHLVISPGPC-TPN--EAG-------- 60 (191)
T ss_pred EEEEECCCchHHHHHHH--------HHHCCCcEEEEeCCCCCHHHHHhc--CCCeEEEcCCCC-ChH--hCC--------
Confidence 78999999988777655 66789999999986 356665442 689999999984 331 111
Q ss_pred HHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCC
Q 014368 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNY 171 (426)
Q Consensus 92 ~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (426)
....+++. +++++||||||+|||+|+.++||++.+....++|
T Consensus 61 --------------------~~~~~i~~-~~~~~PiLGIC~G~Qlla~~~GG~v~~~~~~~~G----------------- 102 (191)
T PRK06774 61 --------------------ISLAVIRH-FADKLPILGVCLGHQALGQAFGARVVRARQVMHG----------------- 102 (191)
T ss_pred --------------------CchHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEeCCcceec-----------------
Confidence 11345554 4679999999999999999999999876422222
Q ss_pred CCceEEEEEecCCcccccccccccccceEEEEecccccch--hccCCCeEEEEEeC-CC---eEEEEEeCCCCCCCCCCc
Q 014368 172 DGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGV--KRLAQRFVPMAFAP-DG---LIEGFYDPDAYNPAEGKF 245 (426)
Q Consensus 172 ~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V--~~Lp~g~~vlA~s~-dG---~Veaie~~~~~~~~~~~~ 245 (426)
+..+.....+++++.++. .+.++++|++.+ ..+|+++.++|+++ ++ .|+++++++ .|
T Consensus 103 ---~~~~~~~~~~~lf~~l~~-------~~~v~~~Hs~~v~~~~lp~~~~vlA~s~~d~~~~~i~~~~~~~-------~~ 165 (191)
T PRK06774 103 ---KTSAICHSGQGVFRGLNQ-------PLTVTRYHSLVIAADSLPGCFELTAWSERGGEMDEIMGIRHRT-------LP 165 (191)
T ss_pred ---ceEEEEecCchhhcCCCC-------CcEEEEeCcceeeccCCCCCeEEEEEeCCCCCcceEEEEEeCC-------CC
Confidence 333444445667766654 578999999998 46899999999986 43 466788875 68
Q ss_pred EEEEcccCCccCCCCCCCCCCCCcHHHHHHHHH
Q 014368 246 IMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (426)
Q Consensus 246 i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (426)
++|+|||||+..++.+ .++|++|++
T Consensus 166 i~GvQfHPE~~~~~~G--------~~i~~nf~~ 190 (191)
T PRK06774 166 LEGVQFHPESILSEQG--------HQLLDNFLK 190 (191)
T ss_pred EEEEEECCCcCCCccH--------HHHHHHHhh
Confidence 9999999999877665 599999985
No 11
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.97 E-value=7.2e-30 Score=242.80 Aligned_cols=189 Identities=20% Similarity=0.278 Sum_probs=142.9
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCC-hhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChh
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG-VHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~-~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e 90 (426)
+|+|+.+.+.+ ...+.+++.+.|+.+++++++.+ .....+.++.+|||||+||+. +|.
T Consensus 2 ~ilv~d~~~~~--------~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~-~~~------------ 60 (214)
T PRK07765 2 RILVVDNYDSF--------VFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPG-TPE------------ 60 (214)
T ss_pred eEEEEECCCcH--------HHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCC-Chh------------
Confidence 57777776432 22467789999999999998753 233444456799999999974 221
Q ss_pred HHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCC
Q 014368 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDN 170 (426)
Q Consensus 91 ~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (426)
++..+..+++.++++++||||||+|||+|+.++||++.+....+.
T Consensus 61 ------------------~~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~~~~~~----------------- 105 (214)
T PRK07765 61 ------------------RAGASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPELLH----------------- 105 (214)
T ss_pred ------------------hcchHHHHHHHHHhCCCCEEEEccCHHHHHHHhCCEEeeCCCCcc-----------------
Confidence 123356789999999999999999999999999999987643222
Q ss_pred CCCceEEEEEecCCcccccccccccccceEEEEecccccchh--ccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEE
Q 014368 171 YDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMG 248 (426)
Q Consensus 171 ~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~--~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~G 248 (426)
|..+.+.+..++ ++..+++ .+.++++|++.|. .+|+++.++|++++|.|+|+++++ .+++|
T Consensus 106 --g~~~~v~~~~~~-~~~~~~~-------~~~v~~~H~~~v~~~~lp~~~~vla~s~~~~vqa~~~~~-------~~i~g 168 (214)
T PRK07765 106 --GKTSSVHHTGVG-VLAGLPD-------PFTATRYHSLTILPETLPAELEVTARTDSGVIMAVRHRE-------LPIHG 168 (214)
T ss_pred --CceeEEEECCCc-cccCCCC-------ccEEEecchheEecccCCCceEEEEEcCCCcEEEEEeCC-------CCEEE
Confidence 224556565444 4444443 5788999999995 799999999999999999999986 67999
Q ss_pred EcccCCccCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014368 249 LQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 249 vQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
+|||||+..+..+ ..++.+|++.|.
T Consensus 169 vQfHPE~~~t~~g--------~~~l~~f~~~~~ 193 (214)
T PRK07765 169 VQFHPESVLTEGG--------HRMLANWLTVCG 193 (214)
T ss_pred EeeCCCcccCcch--------HHHHHHHHHHhc
Confidence 9999999866555 488899987763
No 12
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.97 E-value=1.6e-29 Score=237.23 Aligned_cols=185 Identities=17% Similarity=0.295 Sum_probs=139.5
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhH
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~ 91 (426)
|+|+++.++++++++ +++.+.|..+.+++.+. +.+++.. ..+|||||+|||. +|. +...
T Consensus 2 il~idn~dsft~nl~--------~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iIlsgGP~-~p~--~~~~------- 61 (195)
T PRK07649 2 ILMIDNYDSFTFNLV--------QFLGELGQELVVKRNDEVTISDIEN--MKPDFLMISPGPC-SPN--EAGI------- 61 (195)
T ss_pred EEEEeCCCccHHHHH--------HHHHHCCCcEEEEeCCCCCHHHHhh--CCCCEEEECCCCC-ChH--hCCC-------
Confidence 799999988777654 45788899999999763 4444433 3689999999985 332 1110
Q ss_pred HHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCC
Q 014368 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNY 171 (426)
Q Consensus 92 ~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (426)
...+++. .+.++|+||||+|||+|+.++||++.+....++
T Consensus 62 ---------------------~~~~i~~-~~~~~PvLGIClG~Qlla~~lGg~V~~~~~~~~------------------ 101 (195)
T PRK07649 62 ---------------------SMEVIRY-FAGKIPIFGVCLGHQSIAQVFGGEVVRAERLMH------------------ 101 (195)
T ss_pred ---------------------chHHHHH-hcCCCCEEEEcHHHHHHHHHcCCEEeeCCCccc------------------
Confidence 1234443 357899999999999999999999987642222
Q ss_pred CCceEEEEEecCCcccccccccccccceEEEEecccccchh--ccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEE
Q 014368 172 DGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGL 249 (426)
Q Consensus 172 ~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~--~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~Gv 249 (426)
|.+..+.. .+++++..++. .+.++.+|++.|. .+|++++++|++++|.|+|+++++ .++||+
T Consensus 102 -G~~~~i~~-~~~~lf~~~~~-------~~~v~~~H~~~v~~~~lp~~~~~~a~s~~~~v~a~~~~~-------~~i~gv 165 (195)
T PRK07649 102 -GKTSLMHH-DGKTIFSDIPN-------PFTATRYHSLIVKKETLPDCLEVTSWTEEGEIMAIRHKT-------LPIEGV 165 (195)
T ss_pred -CCeEEEEE-CCChhhcCCCC-------CCEEEEechheEecccCCCCeEEEEEcCCCcEEEEEECC-------CCEEEE
Confidence 23445544 35667777665 5789999999984 689999999999999999999986 679999
Q ss_pred cccCCccCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014368 250 QFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 250 QFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
|||||...++.+ ..+|++|++...
T Consensus 166 QFHPE~~~t~~g--------~~il~nfl~~~~ 189 (195)
T PRK07649 166 QFHPESIMTSHG--------KELLQNFIRKYS 189 (195)
T ss_pred EECCCCCCCccH--------HHHHHHHHHHhH
Confidence 999998877665 589999998653
No 13
>PRK00758 GMP synthase subunit A; Validated
Probab=99.97 E-value=1e-29 Score=235.47 Aligned_cols=182 Identities=24% Similarity=0.361 Sum_probs=136.9
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCC-CEEEECCCCCCCCCcccccCCCCChhH
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPI-HGVLLCEGEDIDPSLYEAETSNLSPEE 91 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~-DGVILsGG~didp~~y~~~~~~~~~e~ 91 (426)
|+|++..+.+.. ...+++...|+.+++++++.+.+++ +.+ ||||||||++++. +.
T Consensus 2 i~iid~~~~~~~--------~i~~~l~~~g~~~~~~~~~~~~~~l----~~~~dgivi~Gg~~~~~--~~---------- 57 (184)
T PRK00758 2 IVVVDNGGQYNH--------LIHRTLRYLGVDAKIIPNTTPVEEI----KAFEDGLILSGGPDIER--AG---------- 57 (184)
T ss_pred EEEEECCCchHH--------HHHHHHHHcCCcEEEEECCCCHHHH----hhcCCEEEECCCCChhh--cc----------
Confidence 677776544322 2456688899999999977665554 346 9999999974210 00
Q ss_pred HHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCC
Q 014368 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNY 171 (426)
Q Consensus 92 ~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (426)
+ ...+++ +.++||||||+|||+|+.++||++.+....++
T Consensus 58 ------------------~--~~~~l~---~~~~PilGIC~G~Q~L~~a~Gg~v~~~~~~~~------------------ 96 (184)
T PRK00758 58 ------------------N--CPEYLK---ELDVPILGICLGHQLIAKAFGGEVGRGEYGEY------------------ 96 (184)
T ss_pred ------------------c--cHHHHH---hCCCCEEEEeHHHHHHHHhcCcEEecCCCcee------------------
Confidence 0 011222 46899999999999999999999886532222
Q ss_pred CCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcc
Q 014368 172 DGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQF 251 (426)
Q Consensus 172 ~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQF 251 (426)
+++.+.+..++.++..+++ .+.++.+|++.|..+|++++++|++++|.|+|+++++ .+++|+||
T Consensus 97 --g~~~i~~~~~~~l~~~~~~-------~~~~~~~H~~~v~~l~~~~~~la~~~~~~v~a~~~~~-------~~~~g~Qf 160 (184)
T PRK00758 97 --ALVEVEILDEDDILKGLPP-------EIRVWASHADEVKELPDGFEILARSDICEVEAMKHKE-------KPIYGVQF 160 (184)
T ss_pred --eeEEEEEcCCChhhhCCCC-------CcEEEeehhhhhhhCCCCCEEEEECCCCCEEEEEECC-------CCEEEEEc
Confidence 2567777777777766665 5788999999999999999999999999999999975 67999999
Q ss_pred cCCccCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 014368 252 HPERMRRPDSDEFDYPGCPSAYQEFVKAVIAY 283 (426)
Q Consensus 252 HPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~~ 283 (426)
|||++.++.+ .+||++|++.|..|
T Consensus 161 HPE~~~~~~g--------~~l~~~f~~~~~~~ 184 (184)
T PRK00758 161 HPEVAHTEYG--------EEIFKNFLEICGKY 184 (184)
T ss_pred CCccCCCchH--------HHHHHHHHHHHccC
Confidence 9999876555 59999999877543
No 14
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.97 E-value=1e-29 Score=234.60 Aligned_cols=185 Identities=22% Similarity=0.365 Sum_probs=146.8
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCC-CChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
.+|+++++.++++.++++| +.+.|+.++++.++ .+...+.. ..+|+|||+.||+ .|.-+
T Consensus 2 ~~IL~IDNyDSFtyNLv~y--------l~~lg~~v~V~rnd~~~~~~~~~--~~pd~iviSPGPG-~P~d~--------- 61 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQY--------LRELGAEVTVVRNDDISLELIEA--LKPDAIVISPGPG-TPKDA--------- 61 (191)
T ss_pred ceEEEEECccchHHHHHHH--------HHHcCCceEEEECCccCHHHHhh--cCCCEEEEcCCCC-ChHHc---------
Confidence 4789999999998888877 67789999998887 33333332 3589999999986 45311
Q ss_pred hHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccC
Q 014368 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (426)
....++++++ ..++||||||+|||.|+.++||+|.+... +.|
T Consensus 62 ---------------------G~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~------------~~H---- 103 (191)
T COG0512 62 ---------------------GISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKE------------PMH---- 103 (191)
T ss_pred ---------------------chHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCC------------CcC----
Confidence 1134677777 67899999999999999999999987631 234
Q ss_pred CCCCceEEEEEecCCcccccccccccccceEEEEecccccchhc--cCCCeEEEEEeCC-CeEEEEEeCCCCCCCCCCcE
Q 014368 170 NYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKR--LAQRFVPMAFAPD-GLIEGFYDPDAYNPAEGKFI 246 (426)
Q Consensus 170 ~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~--Lp~g~~vlA~s~d-G~Veaie~~~~~~~~~~~~i 246 (426)
|....+. ..++.+|..+++ .|.+..||+..++. +|+.++++|++.| +.|+|++|++ .|+
T Consensus 104 ---GK~s~i~-h~g~~iF~glp~-------~f~v~RYHSLvv~~~~lP~~l~vtA~~~d~~~IMai~h~~-------~pi 165 (191)
T COG0512 104 ---GKTSIIT-HDGSGLFAGLPN-------PFTVTRYHSLVVDPETLPEELEVTAESEDGGVIMAVRHKK-------LPI 165 (191)
T ss_pred ---Ceeeeee-cCCcccccCCCC-------CCEEEeeEEEEecCCCCCCceEEEEEeCCCCEEEEEeeCC-------CCE
Confidence 2233222 346789999988 68999999999987 9999999999966 5999999997 899
Q ss_pred EEEcccCCccCCCCCCCCCCCCcHHHHHHHHHH
Q 014368 247 MGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKA 279 (426)
Q Consensus 247 ~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a 279 (426)
+|||||||+..++.+ .++++||++.
T Consensus 166 ~gvQFHPESilT~~G--------~~il~Nfl~~ 190 (191)
T COG0512 166 YGVQFHPESILTEYG--------HRILENFLRL 190 (191)
T ss_pred EEEecCCccccccch--------HHHHHHHHhh
Confidence 999999999999888 5999999975
No 15
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.97 E-value=1.6e-29 Score=232.72 Aligned_cols=169 Identities=24% Similarity=0.407 Sum_probs=131.7
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHH
Q 014368 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (426)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~ 112 (426)
.+.++++..|+.++++|++.+.+. ..++.+||||||||+. +.|++..
T Consensus 13 ~~~~~l~~~G~~~~~~~~~~~~~~--~~~~~~dgvIl~Gg~~---~~~~~~~---------------------------- 59 (181)
T cd01742 13 LIARRVRELGVYSEILPNTTPLEE--IKLKNPKGIILSGGPS---SVYEEDA---------------------------- 59 (181)
T ss_pred HHHHHHHhcCceEEEecCCCChhh--hcccCCCEEEECCCcc---ccccccc----------------------------
Confidence 356778999999999998765442 2356899999999974 2232211
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEecCCcccccccc
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKD 192 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~~~ 192 (426)
..+.+..++.++|+||||+|||+|+.++||++.+....++ +++.+.+..+++++..++.
T Consensus 60 -~~~~~~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~--------------------G~~~v~~~~~~~l~~~~~~ 118 (181)
T cd01742 60 -PRVDPEIFELGVPVLGICYGMQLIAKALGGKVERGDKREY--------------------GKAEIEIDDSSPLFEGLPD 118 (181)
T ss_pred -chhhHHHHhcCCCEEEEcHHHHHHHHhcCCeEEeCCCCcc--------------------eEEEEEecCCChhhcCCCC
Confidence 0123444567999999999999999999999887542222 3666776777888887765
Q ss_pred cccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHH
Q 014368 193 SLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSA 272 (426)
Q Consensus 193 ~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~l 272 (426)
.+.++.+|++.|..+|++++++|+++++.|+|+++++ .++||+|||||++.++.+ ..+
T Consensus 119 -------~~~~~~~H~~~v~~l~~~~~~la~~~~~~i~a~~~~~-------~~~~g~QfHPE~~~~~~g--------~~l 176 (181)
T cd01742 119 -------EQTVWMSHGDEVVKLPEGFKVIASSDNCPVAAIANEE-------KKIYGVQFHPEVTHTEKG--------KEI 176 (181)
T ss_pred -------ceEEEcchhhhhhhcCCCcEEEEeCCCCCEEEEEeCC-------CcEEEEEcCCccccCcCh--------HHH
Confidence 5778899999999999999999999999999999985 689999999999987655 589
Q ss_pred HHHHH
Q 014368 273 YQEFV 277 (426)
Q Consensus 273 f~~Fv 277 (426)
|++|+
T Consensus 177 l~~f~ 181 (181)
T cd01742 177 LKNFL 181 (181)
T ss_pred HHhhC
Confidence 99984
No 16
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.96 E-value=6e-29 Score=252.37 Aligned_cols=169 Identities=25% Similarity=0.405 Sum_probs=131.1
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhH
Q 014368 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (426)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~ 111 (426)
.+++++|.++|+.++++|++.+.+++.+. .+|||||+|||+ ||. ++.
T Consensus 185 ~ni~~~L~~~G~~v~vvp~~~~~~~i~~~--~pDGIiLSgGPg-dp~------------------------------~~~ 231 (358)
T TIGR01368 185 QNILRRLVKRGCEVTVVPYDTDAEEIKKY--NPDGIFLSNGPG-DPA------------------------------AVE 231 (358)
T ss_pred HHHHHHHHHCCCEEEEEcCCCCHHHHHhh--CCCEEEECCCCC-CHH------------------------------HHH
Confidence 35899999999999999998776665442 469999999975 332 123
Q ss_pred HHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEecCCccccccc
Q 014368 112 IELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFK 191 (426)
Q Consensus 112 ~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~~ 191 (426)
.++.+++++++ ++|+||||+|||+|+.++||++++. .++++ |..|+|......
T Consensus 232 ~~i~~i~~~~~-~~PILGIClG~QlLa~a~Gg~v~kl---~~gh~----------------G~nhpV~~~~~~------- 284 (358)
T TIGR01368 232 PAIETIRKLLE-KIPIFGICLGHQLLALAFGAKTYKM---KFGHR----------------GGNHPVKDLITG------- 284 (358)
T ss_pred HHHHHHHHHHc-CCCEEEECHHHHHHHHHhCCceecc---CcCcC----------------CCceeeEECCCC-------
Confidence 34678888887 9999999999999999999999875 23321 335677653221
Q ss_pred ccccccceEEEEecccccchh--ccC-CCeEEEEEe-CCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCC
Q 014368 192 DSLEEEKMEIWVNSYHHQGVK--RLA-QRFVPMAFA-PDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYP 267 (426)
Q Consensus 192 ~~~~~~~~~~~Vns~H~~~V~--~Lp-~g~~vlA~s-~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~ 267 (426)
. .+.++++|+++|+ .+| .+|++++++ +||.||||++++ .|++|||||||...+|.+.
T Consensus 285 ~-------v~itsqnH~~aV~~~~l~~~~l~vta~~~nDg~Vegi~h~~-------~pi~gVQfHPE~~~gp~d~----- 345 (358)
T TIGR01368 285 R-------VEITSQNHGYAVDPDSLPAGDLEVTHVNLNDGTVEGIRHKD-------LPVFSVQYHPEASPGPHDT----- 345 (358)
T ss_pred c-------EEEeecCCCcEEcccccCCCceEEEEEECCCCcEEEEEECC-------CCEEEEEECCCCCCCCCCh-----
Confidence 1 3445568999996 356 689999998 799999999997 7899999999999887553
Q ss_pred CcHHHHHHHHHHHH
Q 014368 268 GCPSAYQEFVKAVI 281 (426)
Q Consensus 268 ~~~~lf~~Fv~av~ 281 (426)
..||++|++++.
T Consensus 346 --~~lF~~F~~~~~ 357 (358)
T TIGR01368 346 --EYLFDEFIDLIK 357 (358)
T ss_pred --HHHHHHHHHHhh
Confidence 689999998874
No 17
>CHL00101 trpG anthranilate synthase component 2
Probab=99.96 E-value=2.7e-29 Score=234.48 Aligned_cols=183 Identities=19% Similarity=0.338 Sum_probs=136.4
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhH
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~ 91 (426)
|+|+++.+++++++ ++++++.|..+.+++.+. +..++.. ..+|||||+|||+ +|. +.
T Consensus 2 iliid~~dsft~~l--------~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiiisgGpg-~~~--~~--------- 59 (190)
T CHL00101 2 ILIIDNYDSFTYNL--------VQSLGELNSDVLVCRNDEIDLSKIKN--LNIRHIIISPGPG-HPR--DS--------- 59 (190)
T ss_pred EEEEECCCchHHHH--------HHHHHhcCCCEEEEECCCCCHHHHhh--CCCCEEEECCCCC-ChH--HC---------
Confidence 78999988765543 556888999999999763 4444332 3699999999984 221 10
Q ss_pred HHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCC
Q 014368 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNY 171 (426)
Q Consensus 92 ~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (426)
..+..+++ +++.++|+||||+|||+|+.++||+|.+....+ |
T Consensus 60 -------------------~~~~~i~~-~~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~~~------------~------ 101 (190)
T CHL00101 60 -------------------GISLDVIS-SYAPYIPILGVCLGHQSIGYLFGGKIIKAPKPM------------H------ 101 (190)
T ss_pred -------------------cchHHHHH-HhcCCCcEEEEchhHHHHHHHhCCEEEECCCcc------------c------
Confidence 11233444 467899999999999999999999998764222 2
Q ss_pred CCceEEEEEecCCcccccccccccccceEEEEecccccchh--ccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCc-EEE
Q 014368 172 DGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKF-IMG 248 (426)
Q Consensus 172 ~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~--~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~-i~G 248 (426)
|.+..+. ..+.+++..++. .+.++++|++.|+ .+|++++++|++++|.++|+++++ .+ +||
T Consensus 102 -g~~~~~~-~~~~~l~~~~~~-------~~~v~~~H~~~v~~~~lp~~~~vla~s~~~~v~a~~~~~-------~~~i~g 165 (190)
T CHL00101 102 -GKTSKIY-HNHDDLFQGLPN-------PFTATRYHSLIIDPLNLPSPLEITAWTEDGLIMACRHKK-------YKMLRG 165 (190)
T ss_pred -CceeeEe-eCCcHhhccCCC-------ceEEEcchhheeecccCCCceEEEEEcCCCcEEEEEeCC-------CCCEEE
Confidence 2233333 345567776665 5789999999995 689999999999999999999986 55 999
Q ss_pred EcccCCccCCCCCCCCCCCCcHHHHHHHHHH
Q 014368 249 LQFHPERMRRPDSDEFDYPGCPSAYQEFVKA 279 (426)
Q Consensus 249 vQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a 279 (426)
+|||||+..++.+ ..+|++|++.
T Consensus 166 vQfHPE~~~~~~g--------~~l~~nf~~~ 188 (190)
T CHL00101 166 IQFHPESLLTTHG--------QQILRNFLSL 188 (190)
T ss_pred EEeCCccCCChhH--------HHHHHHHHhh
Confidence 9999999876655 5899999874
No 18
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.96 E-value=8.6e-29 Score=251.53 Aligned_cols=168 Identities=26% Similarity=0.427 Sum_probs=133.6
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhH
Q 014368 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (426)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~ 111 (426)
.+|+++|.++|+.++++|++.+.+++... .+|||||+|||+ +|. ++.
T Consensus 189 ~nivr~L~~~G~~v~vvp~~~~~~~i~~~--~~DGIvLSgGPg-dp~------------------------------~~~ 235 (360)
T PRK12564 189 RNILRELAERGCRVTVVPATTTAEEILAL--NPDGVFLSNGPG-DPA------------------------------ALD 235 (360)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHhc--CCCEEEEeCCCC-ChH------------------------------HHH
Confidence 46899999999999999998777666542 699999999974 332 123
Q ss_pred HHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEecCCccccccc
Q 014368 112 IELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFK 191 (426)
Q Consensus 112 ~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~~ 191 (426)
.++.+++.+++.++|+||||+|||+|+.++||++++.. ++++ |..|+|......
T Consensus 236 ~~~~~i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl~---~gh~----------------G~~~pv~~~~~~------- 289 (360)
T PRK12564 236 YAIEMIRELLEKKIPIFGICLGHQLLALALGAKTYKMK---FGHR----------------GANHPVKDLETG------- 289 (360)
T ss_pred HHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCcEeccC---CCcc----------------CCceeeEECCCC-------
Confidence 35678899998899999999999999999999998753 3211 335667654321
Q ss_pred ccccccceEEEEecccccchh--ccCCCeEEEEEe-CCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCC
Q 014368 192 DSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFA-PDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPG 268 (426)
Q Consensus 192 ~~~~~~~~~~~Vns~H~~~V~--~Lp~g~~vlA~s-~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~ 268 (426)
. .+.++++|+++|+ .+|+++++++++ +||.||||++++ .|+||||||||...+|.+.
T Consensus 290 ~-------~~its~~H~~~V~~~~lp~~l~v~a~~~~Dg~iegi~~~~-------~pi~gVQfHPE~~~gp~d~------ 349 (360)
T PRK12564 290 K-------VEITSQNHGFAVDEDSLPANLEVTHVNLNDGTVEGLRHKD-------LPAFSVQYHPEASPGPHDS------ 349 (360)
T ss_pred c-------EEEEecCcccEEcccccCCceEEEEEeCCCCcEEEEEECC-------CCEEEEEeCCcCCCCCCCH------
Confidence 1 3456678999996 799999999998 699999999986 7899999999999877643
Q ss_pred cHHHHHHHHHH
Q 014368 269 CPSAYQEFVKA 279 (426)
Q Consensus 269 ~~~lf~~Fv~a 279 (426)
..+|++|++.
T Consensus 350 -~~lF~~F~~~ 359 (360)
T PRK12564 350 -AYLFDEFVEL 359 (360)
T ss_pred -HHHHHHHHHh
Confidence 6899999975
No 19
>PLN02335 anthranilate synthase
Probab=99.96 E-value=4.5e-29 Score=238.61 Aligned_cols=196 Identities=21% Similarity=0.325 Sum_probs=142.8
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLS 88 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~ 88 (426)
.++|+|+++.+.++++ .+++|...|+.+.+++++. +.+.+.. ..+|||||+|||. +|. +...
T Consensus 18 ~~~ilviD~~dsft~~--------i~~~L~~~g~~~~v~~~~~~~~~~~~~--~~~d~iVisgGPg-~p~--d~~~---- 80 (222)
T PLN02335 18 NGPIIVIDNYDSFTYN--------LCQYMGELGCHFEVYRNDELTVEELKR--KNPRGVLISPGPG-TPQ--DSGI---- 80 (222)
T ss_pred cCcEEEEECCCCHHHH--------HHHHHHHCCCcEEEEECCCCCHHHHHh--cCCCEEEEcCCCC-Chh--hccc----
Confidence 4788888887765544 4566888999999999863 4444432 3589999999985 332 1110
Q ss_pred hhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeeccc
Q 014368 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDY 168 (426)
Q Consensus 89 ~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~ 168 (426)
. ...++ ....++||||||+|||+|+.++||++.+.... ..|
T Consensus 81 ----------------------~--~~~~~-~~~~~~PiLGIClG~QlLa~alGg~v~~~~~~-----------~~~--- 121 (222)
T PLN02335 81 ----------------------S--LQTVL-ELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFG-----------VMH--- 121 (222)
T ss_pred ----------------------h--HHHHH-HhCCCCCEEEecHHHHHHHHHhCCEEEeCCCc-----------ccc---
Confidence 0 12222 23567999999999999999999998765311 012
Q ss_pred CCCCCceEEEEEec--CCcccccccccccccceEEEEecccccchh--ccCCC-eEEEEEeCCCeEEEEEeCCCCCCCCC
Q 014368 169 DNYDGHRHVVKVVK--DTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQR-FVPMAFAPDGLIEGFYDPDAYNPAEG 243 (426)
Q Consensus 169 ~~~~g~~~~V~v~~--~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~--~Lp~g-~~vlA~s~dG~Veaie~~~~~~~~~~ 243 (426)
|.+.++.... .++|+..++. .+.++++|+++|+ .+|.+ ++++|+++||.|+++++++ .
T Consensus 122 ----G~~~~v~~~~~~~~~Lf~~l~~-------~~~v~~~H~~~v~~~~lp~~~~~v~a~~~~~~v~ai~~~~------~ 184 (222)
T PLN02335 122 ----GKSSPVHYDEKGEEGLFSGLPN-------PFTAGRYHSLVIEKDTFPSDELEVTAWTEDGLIMAARHRK------Y 184 (222)
T ss_pred ----CceeeeEECCCCCChhhhCCCC-------CCEEEechhheEecccCCCCceEEEEEcCCCCEEEEEecC------C
Confidence 3355666543 2467777765 5789999999995 57776 9999999999999999986 2
Q ss_pred CcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHh
Q 014368 244 KFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQKK 286 (426)
Q Consensus 244 ~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~~~~~ 286 (426)
+++||+|||||+..++.+ ..+|++|++.+.+++.+
T Consensus 185 ~~i~GvQfHPE~~~~~~g--------~~i~~nF~~~~~~~~~~ 219 (222)
T PLN02335 185 KHIQGVQFHPESIITTEG--------KTIVRNFIKIIEKKESE 219 (222)
T ss_pred CCEEEEEeCCCCCCChhH--------HHHHHHHHHHHHhhccc
Confidence 459999999999987655 59999999988766543
No 20
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.96 E-value=8.3e-29 Score=231.61 Aligned_cols=183 Identities=21% Similarity=0.337 Sum_probs=135.9
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCC-CChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhH
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~ 91 (426)
|+++++.++++++++ +++++.|..+.+++++ .+...+.+ ..+||||++|||. +|. ++.
T Consensus 2 il~id~~dsft~~~~--------~~l~~~g~~~~~~~~~~~~~~~~~~--~~~~~iilsgGp~-~~~--~~~-------- 60 (193)
T PRK08857 2 LLMIDNYDSFTYNLY--------QYFCELGAQVKVVRNDEIDIDGIEA--LNPTHLVISPGPC-TPN--EAG-------- 60 (193)
T ss_pred EEEEECCCCcHHHHH--------HHHHHCCCcEEEEECCCCCHHHHhh--CCCCEEEEeCCCC-ChH--HCc--------
Confidence 789999988877654 5578899999999976 34444332 2489999999973 221 111
Q ss_pred HHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCC
Q 014368 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNY 171 (426)
Q Consensus 92 ~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (426)
....+++. ++.++|+||||+|||+|+.++||++.+....++|
T Consensus 61 --------------------~~~~~i~~-~~~~~PiLGIClG~Qlia~a~Gg~v~~~~~~~~G----------------- 102 (193)
T PRK08857 61 --------------------ISLQAIEH-FAGKLPILGVCLGHQAIAQVFGGQVVRARQVMHG----------------- 102 (193)
T ss_pred --------------------chHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCEEEeCCCceeC-----------------
Confidence 11345554 5689999999999999999999999875422222
Q ss_pred CCceEEEEEecCCcccccccccccccceEEEEecccccchh--ccCCCeEEEEEeC--CC---eEEEEEeCCCCCCCCCC
Q 014368 172 DGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFAP--DG---LIEGFYDPDAYNPAEGK 244 (426)
Q Consensus 172 ~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~--~Lp~g~~vlA~s~--dG---~Veaie~~~~~~~~~~~ 244 (426)
...++... ++.++..++. .+.|+++|+++|+ .+|++++++|+++ |+ .|+++++++ .
T Consensus 103 --~~~~~~~~-~~~l~~~~~~-------~~~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~~~~~i~~~~~~~-------~ 165 (193)
T PRK08857 103 --KTSPIRHT-GRSVFKGLNN-------PLTVTRYHSLVVKNDTLPECFELTAWTELEDGSMDEIMGFQHKT-------L 165 (193)
T ss_pred --ceEEEEEC-CCcccccCCC-------ccEEEEccEEEEEcCCCCCCeEEEEEecCcCCCcceEEEEEeCC-------C
Confidence 23344443 4456665554 5789999999985 7999999999986 54 699999987 7
Q ss_pred cEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHH
Q 014368 245 FIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKA 279 (426)
Q Consensus 245 ~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a 279 (426)
|++|+|||||+..++.+ ..+|++|++.
T Consensus 166 pi~gvQfHPE~~~t~~g--------~~i~~nFl~~ 192 (193)
T PRK08857 166 PIEAVQFHPESIKTEQG--------HQLLANFLAR 192 (193)
T ss_pred CEEEEeeCCCcCCCcch--------HHHHHHHHhh
Confidence 99999999999987766 5999999863
No 21
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.96 E-value=1.5e-28 Score=226.89 Aligned_cols=165 Identities=26% Similarity=0.404 Sum_probs=126.9
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHH
Q 014368 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (426)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~ 112 (426)
.++++++..|+.++++|++.+.+.+. ...+|||||+||++ +|. ++..
T Consensus 11 ~~~~~l~~~G~~~~~~~~~~~~~~~~--~~~~dgiil~GG~~-~~~------------------------------~~~~ 57 (178)
T cd01744 11 NILRELLKRGCEVTVVPYNTDAEEIL--KLDPDGIFLSNGPG-DPA------------------------------LLDE 57 (178)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHh--hcCCCEEEECCCCC-Chh------------------------------HhHH
Confidence 47889999999999999887655442 24699999999973 221 1133
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEecCCcccccccc
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKD 192 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~~~ 192 (426)
+..++++++++++|+||||+|||+|+.++||++.+... + | .+..++|.....+ .
T Consensus 58 ~~~~~~~~~~~~~PvlGIC~G~Q~l~~~~Gg~v~~~~~---~----------~------~g~~~~v~~~~~~-------~ 111 (178)
T cd01744 58 AIKTVRKLLGKKIPIFGICLGHQLLALALGAKTYKMKF---G----------H------RGSNHPVKDLITG-------R 111 (178)
T ss_pred HHHHHHHHHhCCCCEEEECHHHHHHHHHcCCceecCCC---C----------C------CCCceeeEEcCCC-------C
Confidence 46789999999999999999999999999999887421 1 0 0224566543221 1
Q ss_pred cccccceEEEEecccccchh--ccCCCeEEEEEe-CCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCc
Q 014368 193 SLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFA-PDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGC 269 (426)
Q Consensus 193 ~~~~~~~~~~Vns~H~~~V~--~Lp~g~~vlA~s-~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~ 269 (426)
.+.++++|+++++ .+|++++++|++ +|+.|||+++++ .+++|+|||||+..++...
T Consensus 112 -------~~~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~i~a~~~~~-------~~i~GvQfHPE~~~~~~~~------- 170 (178)
T cd01744 112 -------VYITSQNHGYAVDPDSLPGGLEVTHVNLNDGTVEGIRHKD-------LPVFSVQFHPEASPGPHDT------- 170 (178)
T ss_pred -------cEEEEcCceEEEcccccCCceEEEEEECCCCcEEEEEECC-------CCeEEEeeCCCCCCCCCCc-------
Confidence 4568899999995 699999999998 689999999986 6799999999998765443
Q ss_pred HHHHHHHH
Q 014368 270 PSAYQEFV 277 (426)
Q Consensus 270 ~~lf~~Fv 277 (426)
.+||++|+
T Consensus 171 ~~lf~~f~ 178 (178)
T cd01744 171 EYLFDEFL 178 (178)
T ss_pred hHhHhhhC
Confidence 58999995
No 22
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.96 E-value=1e-28 Score=230.29 Aligned_cols=185 Identities=24% Similarity=0.387 Sum_probs=141.5
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChh
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e 90 (426)
.+|+|+.+.+++..+ ..+++++.|+.+.+++.+.. . .+.++.+|||||+||++. |..|.
T Consensus 2 ~~iliid~~dsf~~~--------i~~~l~~~g~~~~v~~~~~~--~-~~~l~~~d~iIi~gGp~~-~~~~~--------- 60 (190)
T PRK06895 2 TKLLIINNHDSFTFN--------LVDLIRKLGVPMQVVNVEDL--D-LDEVENFSHILISPGPDV-PRAYP--------- 60 (190)
T ss_pred cEEEEEeCCCchHHH--------HHHHHHHcCCcEEEEECCcc--C-hhHhccCCEEEECCCCCC-hHHhh---------
Confidence 378999988775444 45668889999998886431 1 223457999999999862 32111
Q ss_pred HHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCC
Q 014368 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDN 170 (426)
Q Consensus 91 ~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (426)
+ ...+++. .+.++|+||||+|||+|+.++||+|.+... ..|
T Consensus 61 ---~------------------~~~~i~~-~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~------------~~~----- 101 (190)
T PRK06895 61 ---Q------------------LFAMLER-YHQHKSILGVCLGHQTLCEFFGGELYNLNN------------VRH----- 101 (190)
T ss_pred ---H------------------HHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCeEeecCC------------Ccc-----
Confidence 0 1245554 567999999999999999999999876421 123
Q ss_pred CCCceEEEEEecCCcccccccccccccceEEEEecccccchh--ccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEE
Q 014368 171 YDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMG 248 (426)
Q Consensus 171 ~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~--~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~G 248 (426)
|.+.++....++++++.+++ .+.+..+|++++. ++|.++.+++.++++.++++++++ .|+||
T Consensus 102 --g~~~~v~~~~~~~l~~~~~~-------~~~v~~~Hs~~v~~~~lp~~l~~~a~~~~~~i~a~~~~~-------~pi~G 165 (190)
T PRK06895 102 --GQQRPLKVRSNSPLFDGLPE-------EFNIGLYHSWAVSEENFPTPLEITAVCDENVVMAMQHKT-------LPIYG 165 (190)
T ss_pred --CceEEEEECCCChhhhcCCC-------ceEEEcchhheecccccCCCeEEEEECCCCcEEEEEECC-------CCEEE
Confidence 33667777778889888876 5778899999996 588999999999999999999986 68999
Q ss_pred EcccCCccCCCCCCCCCCCCcHHHHHHHHHH
Q 014368 249 LQFHPERMRRPDSDEFDYPGCPSAYQEFVKA 279 (426)
Q Consensus 249 vQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a 279 (426)
+|||||+..++.+ ..++++|++.
T Consensus 166 vQFHPE~~~~~~g--------~~il~nf~~~ 188 (190)
T PRK06895 166 VQFHPESYISEFG--------EQILRNWLAI 188 (190)
T ss_pred EEeCCCcCCCcch--------HHHHHHHHhh
Confidence 9999999887766 5899999863
No 23
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.96 E-value=2.4e-28 Score=231.44 Aligned_cols=194 Identities=21% Similarity=0.301 Sum_probs=138.9
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChh
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e 90 (426)
.+|+|+++.+.++.++ ++.+...|+.+.++|++.+.+++.. ..+|||||+|||+ +| ++.
T Consensus 2 ~~il~iD~~dsf~~nl--------~~~l~~~g~~~~v~~~~~~~~~l~~--~~~~~iIlsgGPg-~~--~d~-------- 60 (208)
T PRK05637 2 THVVLIDNHDSFVYNL--------VDAFAVAGYKCTVFRNTVPVEEILA--ANPDLICLSPGPG-HP--RDA-------- 60 (208)
T ss_pred CEEEEEECCcCHHHHH--------HHHHHHCCCcEEEEeCCCCHHHHHh--cCCCEEEEeCCCC-CH--HHh--------
Confidence 5789999988766554 4558889999999999876666653 3689999999985 22 110
Q ss_pred HHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCC
Q 014368 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDN 170 (426)
Q Consensus 91 ~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (426)
.....+++.+. .++||||||+|||+|+.++||++.+.. .+.|
T Consensus 61 --------------------~~~~~li~~~~-~~~PiLGIClG~Qlla~alGG~V~~~~-~~~G---------------- 102 (208)
T PRK05637 61 --------------------GNMMALIDRTL-GQIPLLGICLGFQALLEHHGGKVEPCG-PVHG---------------- 102 (208)
T ss_pred --------------------hHHHHHHHHHh-CCCCEEEEcHHHHHHHHHcCCeeccCC-cccc----------------
Confidence 01134555444 579999999999999999999988643 1221
Q ss_pred CCCceEEEEEec---CCccccccccccccc-----ceEEEEecccccchhccCCCeEEEEEeCC--C-eEEEEEeCCCCC
Q 014368 171 YDGHRHVVKVVK---DTPLHDWFKDSLEEE-----KMEIWVNSYHHQGVKRLAQRFVPMAFAPD--G-LIEGFYDPDAYN 239 (426)
Q Consensus 171 ~~g~~~~V~v~~---~s~L~~~~~~~~~~~-----~~~~~Vns~H~~~V~~Lp~g~~vlA~s~d--G-~Veaie~~~~~~ 239 (426)
.+..+.+.. .++++..++.....+ ...+.|+++|++.|..+|++++++|++++ + .++++++.+
T Consensus 103 ---~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~lp~~~~vlA~s~~~~~~v~~a~~~~~--- 176 (208)
T PRK05637 103 ---TTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCVVAPDGMESLGTCSSEIGPVIMAAETTD--- 176 (208)
T ss_pred ---eEEEeEECCCCCCCcccCCCCcccccccccccCCceEEEEechhhhhcCCCCeEEEEEecCCCCCEEEEEEECC---
Confidence 233343332 234444432110000 02578999999999999999999999754 3 788989886
Q ss_pred CCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014368 240 PAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 240 ~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
.++||+|||||...++.| ..+|+||++...
T Consensus 177 ----~~~~GvQfHPE~~~T~~G--------~~il~nfl~~~~ 206 (208)
T PRK05637 177 ----GKAIGLQFHPESVLSPTG--------PIILSRCVEQLL 206 (208)
T ss_pred ----CCEEEEEeCCccCcCCCH--------HHHHHHHHHHHh
Confidence 789999999999999987 599999998654
No 24
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.96 E-value=1.2e-28 Score=244.78 Aligned_cols=175 Identities=26% Similarity=0.407 Sum_probs=143.3
Q ss_pred hhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhh
Q 014368 31 GEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKD 110 (426)
Q Consensus 31 ~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd 110 (426)
...+++.|.++|+.+++||++++.+++.++ .+|||+||+||+ ||...
T Consensus 190 K~nIlr~L~~rg~~vtVVP~~t~~eeIl~~--~pDGiflSNGPG-DP~~~------------------------------ 236 (368)
T COG0505 190 KRNILRELVKRGCRVTVVPADTSAEEILAL--NPDGIFLSNGPG-DPAPL------------------------------ 236 (368)
T ss_pred cHHHHHHHHHCCCeEEEEcCCCCHHHHHhh--CCCEEEEeCCCC-ChhHH------------------------------
Confidence 347899999999999999999999998775 799999999997 66421
Q ss_pred HHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEecCCcccccc
Q 014368 111 SIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWF 190 (426)
Q Consensus 111 ~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~ 190 (426)
...+..++..++..+|+||||+|||+|+.|+|++.+++ .||++ |.+|+|+-...
T Consensus 237 ~~~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~Km---kFGHr----------------G~NhPV~dl~t------- 290 (368)
T COG0505 237 DYAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKM---KFGHR----------------GANHPVKDLDT------- 290 (368)
T ss_pred HHHHHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeec---ccCCC----------------CCCcCcccccC-------
Confidence 12356888888888999999999999999999999998 57643 45677753211
Q ss_pred cccccccceEEEEecccccchh--ccCCCeEEEEEe-CCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCC
Q 014368 191 KDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFA-PDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYP 267 (426)
Q Consensus 191 ~~~~~~~~~~~~Vns~H~~~V~--~Lp~g~~vlA~s-~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~ 267 (426)
+. .+.+.++|+++|+ +++...+++.++ +||.||+++|++ .|+++||||||.+++|.+.
T Consensus 291 gr-------v~ITSQNHGyaVd~~s~~~~~~vth~nlnDgTvEGi~h~~-------~P~fSVQ~HPEAsPGPhDt----- 351 (368)
T COG0505 291 GR-------VYITSQNHGYAVDEDSLVETLKVTHVNLNDGTVEGIRHKD-------LPAFSVQYHPEASPGPHDT----- 351 (368)
T ss_pred Ce-------EEEEecCCceecChhhcCCCceeEEEeCCCCCccceecCC-------CceEEEccCCCCCCCCccc-----
Confidence 11 4556788999997 355444788888 899999999997 8999999999999999886
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 014368 268 GCPSAYQEFVKAVIAYQK 285 (426)
Q Consensus 268 ~~~~lf~~Fv~av~~~~~ 285 (426)
..||+.|++.+.++++
T Consensus 352 --~ylFd~Fi~~~~~~~~ 367 (368)
T COG0505 352 --RYLFDEFIELMEAAKK 367 (368)
T ss_pred --HHHHHHHHHHHHHhhc
Confidence 6999999999987654
No 25
>PLN02347 GMP synthetase
Probab=99.96 E-value=1.2e-28 Score=261.93 Aligned_cols=200 Identities=22% Similarity=0.295 Sum_probs=152.9
Q ss_pred CCCCCCCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCccccc
Q 014368 4 HDLSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAE 83 (426)
Q Consensus 4 ~~~~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~ 83 (426)
+.-..++.+|+|++..+.+. ...++.++..|+.++++|++.+.+++.+. .+|||||||||. +.|++.
T Consensus 4 ~~~~~~~~~IlIID~G~~~t--------~~I~r~lrelgv~~~v~p~~~~~~~i~~~--~~dgIILsGGP~---sv~~~~ 70 (536)
T PLN02347 4 EAAKSYLDVVLILDYGSQYT--------HLITRRVRELGVYSLLLSGTASLDRIASL--NPRVVILSGGPH---SVHVEG 70 (536)
T ss_pred ccccccCCEEEEEECCCcHH--------HHHHHHHHHCCCeEEEEECCCCHHHHhcC--CCCEEEECCCCC---cccccC
Confidence 33345678899998876532 23467788999999999998887777542 689999999974 223322
Q ss_pred CCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcce
Q 014368 84 TSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRV 163 (426)
Q Consensus 84 ~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v 163 (426)
..+ ....+++.+.+.++||||||+|||+|+.++||++.+....++
T Consensus 71 ~p~-------------------------~~~~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~~~~e~---------- 115 (536)
T PLN02347 71 APT-------------------------VPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPGEKQEY---------- 115 (536)
T ss_pred Cch-------------------------hhHHHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEecCCccc----------
Confidence 110 112355566677999999999999999999999887543333
Q ss_pred eecccCCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCC
Q 014368 164 VHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEG 243 (426)
Q Consensus 164 ~H~~~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~ 243 (426)
++++|.+..+++|++.++.. ..+.++.+|++.+..+|++|+++|++++|.|+|+++++
T Consensus 116 ----------G~~~v~i~~~~~Lf~~l~~~-----~~~~v~~~Hsd~V~~lP~g~~vlA~s~~~~iaai~~~~------- 173 (536)
T PLN02347 116 ----------GRMEIRVVCGSQLFGDLPSG-----ETQTVWMSHGDEAVKLPEGFEVVAKSVQGAVVAIENRE------- 173 (536)
T ss_pred ----------ceEEEEEcCCChhhhcCCCC-----ceEEEEEEEEEEeeeCCCCCEEEEEeCCCcEEEEEECC-------
Confidence 36678777788888877651 13678889999998999999999999999999999986
Q ss_pred CcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014368 244 KFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 244 ~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
.++||+|||||++.++.| ..++++|+..+-
T Consensus 174 ~~i~GvQFHPE~~~t~~G--------~~iL~NFl~~ic 203 (536)
T PLN02347 174 RRIYGLQYHPEVTHSPKG--------METLRHFLFDVC 203 (536)
T ss_pred CCEEEEEccCCCCccchH--------HHHHHHHHHHHh
Confidence 789999999999988777 589999986443
No 26
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.96 E-value=2.5e-28 Score=256.15 Aligned_cols=180 Identities=23% Similarity=0.341 Sum_probs=137.9
Q ss_pred hhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHH
Q 014368 57 LLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQV 136 (426)
Q Consensus 57 l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~Ql 136 (426)
..+.++.+|||||+||.+- + .. ..++.++++++++++|+||||+|||+
T Consensus 337 ~~~~L~~~DGIIlpGGfG~-~------~~-------------------------~g~i~~i~~a~e~~iPiLGIClGmQl 384 (533)
T PRK05380 337 VAELLKGVDGILVPGGFGE-R------GI-------------------------EGKILAIRYARENNIPFLGICLGMQL 384 (533)
T ss_pred hhhHhhcCCEEEecCCCCc-c------cc-------------------------ccHHHHHHHHHHCCCcEEEEchHHHH
Confidence 3456788999999999531 1 00 11356889999999999999999999
Q ss_pred HHHHhCCcc--cccc-hhhhcccCCCCcceeecccC---------CCCCceEEEEEecCCccccccccccccc--ceEEE
Q 014368 137 LNVACGGTL--YQDI-EKEVSRKCPENQRVVHIDYD---------NYDGHRHVVKVVKDTPLHDWFKDSLEEE--KMEIW 202 (426)
Q Consensus 137 Lava~GG~l--~~~~-~~e~g~~~~~~~~v~H~~~~---------~~~g~~~~V~v~~~s~L~~~~~~~~~~~--~~~~~ 202 (426)
|++++||++ +++. +.|+++. +..++.+.... ....+.|+|.+.++|.++++++...+.+ +|+|.
T Consensus 385 l~va~Ggnv~g~qda~s~E~~~~--t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~gS~l~~iyg~~~i~ErhrHrye 462 (533)
T PRK05380 385 AVIEFARNVLGLEDANSTEFDPD--TPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPGTLAAEIYGKEEIYERHRHRYE 462 (533)
T ss_pred HHHHhcccccCcccCcccccCCC--CCCCeEeeccccccccccCCcccccceeEEECCCChHHHHhCCCceeeeccccee
Confidence 999999998 4665 3455421 22333221111 1123579999999999999998764444 48899
Q ss_pred EecccccchhccCCCeEEEEEeCCC-eEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014368 203 VNSYHHQGVKRLAQRFVPMAFAPDG-LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 203 Vns~H~~~V~~Lp~g~~vlA~s~dG-~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
||+.|++++++ .+++++|+++|| .|||+|.++ ++|++|||||||+.+.+..+ .+||.+|+++|.
T Consensus 463 VNs~h~qal~~--~GL~vsa~s~DgglVEaIEl~~------hpfflGVQwHPE~~s~p~~~-------~pLF~~FV~Aa~ 527 (533)
T PRK05380 463 VNNKYREQLEK--AGLVFSGTSPDGRLVEIVELPD------HPWFVGVQFHPEFKSRPRRP-------HPLFAGFVKAAL 527 (533)
T ss_pred cCHHHHHHHhh--cCeEEEEEcCCCCcEEEEEeCC------CCEEEEEeCCCCCCCCCCch-------HHHHHHHHHHHH
Confidence 99999999987 499999999775 999999987 57889999999999877654 699999999998
Q ss_pred HHHH
Q 014368 282 AYQK 285 (426)
Q Consensus 282 ~~~~ 285 (426)
.+++
T Consensus 528 ~~~~ 531 (533)
T PRK05380 528 ENKK 531 (533)
T ss_pred HHhh
Confidence 7654
No 27
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.96 E-value=1.9e-28 Score=226.81 Aligned_cols=182 Identities=21% Similarity=0.270 Sum_probs=136.1
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHH
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEEL 92 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~ 92 (426)
|+|+++.+.+.+. +.+++++.|+.+.+++++.+.+.+.+ ++.+||||++||++ ++ +++
T Consensus 1 il~~~~~~~~~~~--------~~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~dgvil~gG~~-~~--~~~---------- 58 (184)
T cd01743 1 ILLIDNYDSFTYN--------LVQYLRELGAEVVVVRNDEITLEELE-LLNPDAIVISPGPG-HP--EDA---------- 58 (184)
T ss_pred CEEEeCCCccHHH--------HHHHHHHcCCceEEEeCCCCCHHHHh-hcCCCEEEECCCCC-Cc--ccc----------
Confidence 4677766554333 46778899999999999876554333 36799999999974 21 110
Q ss_pred HHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCC
Q 014368 93 EEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYD 172 (426)
Q Consensus 93 ~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~ 172 (426)
. +...+..++++++|+||||+|||+|+.++||++.+....+.
T Consensus 59 ------------------~-~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~~~~~~------------------- 100 (184)
T cd01743 59 ------------------G-ISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRAPEPMH------------------- 100 (184)
T ss_pred ------------------h-hHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEEEeCCCCCc-------------------
Confidence 0 12334444567899999999999999999999886542111
Q ss_pred CceEEEEEecCCcccccccccccccceEEEEecccccchhccCCC--eEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEc
Q 014368 173 GHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQR--FVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQ 250 (426)
Q Consensus 173 g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g--~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQ 250 (426)
+.++++.+. +++++..+++ .+.++.+|++.|..+|.+ ++++|.++++.|+|+++++ .++||+|
T Consensus 101 g~~~~v~~~-~~~~~~~~~~-------~~~~~~~H~~~v~~~~~~~~~~~la~~~~~~v~a~~~~~-------~~i~gvQ 165 (184)
T cd01743 101 GKTSEIHHD-GSGLFKGLPQ-------PFTVGRYHSLVVDPDPLPDLLEVTASTEDGVIMALRHRD-------LPIYGVQ 165 (184)
T ss_pred CceeEEEEC-CCccccCCCC-------CcEEEeCcEEEEecCCCCceEEEEEeCCCCeEEEEEeCC-------CCEEEEe
Confidence 235667765 4556666655 567889999999888777 9999999999999999985 6899999
Q ss_pred ccCCccCCCCCCCCCCCCcHHHHHHHH
Q 014368 251 FHPERMRRPDSDEFDYPGCPSAYQEFV 277 (426)
Q Consensus 251 FHPE~~~~~~~~~~d~~~~~~lf~~Fv 277 (426)
||||+..++.+ .+||++|+
T Consensus 166 fHPE~~~~~~g--------~~l~~~f~ 184 (184)
T cd01743 166 FHPESILTEYG--------LRLLENFL 184 (184)
T ss_pred eCCCcCCCcch--------HHHHHhhC
Confidence 99999888776 59999994
No 28
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.96 E-value=1.2e-27 Score=242.66 Aligned_cols=171 Identities=24% Similarity=0.335 Sum_probs=132.0
Q ss_pred hhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhh
Q 014368 31 GEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKD 110 (426)
Q Consensus 31 ~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd 110 (426)
...++++|.+.|+.++++|++.+.+++.. ..+|||||+|||+ ||.. +
T Consensus 178 k~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~~DGIiLsgGPg-dp~~------------------------------~ 224 (354)
T PRK12838 178 KKSILRSLSKRGCKVTVLPYDTSLEEIKN--LNPDGIVLSNGPG-DPKE------------------------------L 224 (354)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCHHHHhh--cCCCEEEEcCCCC-ChHH------------------------------h
Confidence 45689999999999999999877666643 2699999999985 4421 1
Q ss_pred HHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEecCCcccccc
Q 014368 111 SIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWF 190 (426)
Q Consensus 111 ~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~ 190 (426)
.....+++.++++ +|+||||+|||+|+.++||++++.. ++ | .|..|+|.....+.
T Consensus 225 ~~~~~~i~~~~~~-~PvlGIClG~QlLa~a~Gg~v~kl~---~g----------h------~G~~hpV~~~~~~~----- 279 (354)
T PRK12838 225 QPYLPEIKKLISS-YPILGICLGHQLIALALGADTEKLP---FG----------H------RGANHPVIDLTTGR----- 279 (354)
T ss_pred HHHHHHHHHHhcC-CCEEEECHHHHHHHHHhCCEEecCC---CC----------c------cCCceEEEECCCCe-----
Confidence 1124567777766 9999999999999999999998752 22 1 13467887643321
Q ss_pred cccccccceEEEEecccccchhc--cCC-CeEEEEEe-CCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCC
Q 014368 191 KDSLEEEKMEIWVNSYHHQGVKR--LAQ-RFVPMAFA-PDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDY 266 (426)
Q Consensus 191 ~~~~~~~~~~~~Vns~H~~~V~~--Lp~-g~~vlA~s-~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~ 266 (426)
.+.++++|+++|+. ++. ++.+++++ +||.||||++++ .|+||||||||...++.+
T Consensus 280 ---------~~~ts~~H~~aV~~~sl~~~~l~v~a~~~~Dg~Veai~~~~-------~pi~gVQfHPE~~~gp~d----- 338 (354)
T PRK12838 280 ---------VWMTSQNHGYVVDEDSLDGTPLSVRFFNVNDGSIEGLRHKK-------KPVLSVQFHPEAHPGPHD----- 338 (354)
T ss_pred ---------EEEeccchheEecccccCCCCcEEEEEECCCCeEEEEEECC-------CCEEEEEeCCCCCCCCcc-----
Confidence 35577899999964 554 58999986 799999999997 789999999999887654
Q ss_pred CCcHHHHHHHHHHHHH
Q 014368 267 PGCPSAYQEFVKAVIA 282 (426)
Q Consensus 267 ~~~~~lf~~Fv~av~~ 282 (426)
...||++|++++.+
T Consensus 339 --~~~lF~~F~~~~~~ 352 (354)
T PRK12838 339 --AEYIFDEFLEMMEK 352 (354)
T ss_pred --HHHHHHHHHHHHHh
Confidence 26899999998863
No 29
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.96 E-value=8.3e-28 Score=231.72 Aligned_cols=213 Identities=23% Similarity=0.257 Sum_probs=141.1
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh-hhh--hhhcCCCCEEEECCCCCCCCCcccccCCCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-HML--LDSFEPIHGVLLCEGEDIDPSLYEAETSNL 87 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-~~l--~~~le~~DGVILsGG~didp~~y~~~~~~~ 87 (426)
++|++|.-++..-..+-+ +-.....+....++.+.++..+.+. +.. .+.+..+|||||+||++. +..
T Consensus 1 ~~i~lvg~~~~~~day~s-~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~-~~~-------- 70 (235)
T cd01746 1 VRIALVGKYVELPDAYLS-VLEALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGI-RGV-------- 70 (235)
T ss_pred CEEEEEECCcCCHHHHHH-HHHHHHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCC-cch--------
Confidence 367777655432121111 1222233333455555554433322 111 245778999999999742 110
Q ss_pred ChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchh---hhcccCCCCccee
Q 014368 88 SPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEK---EVSRKCPENQRVV 164 (426)
Q Consensus 88 ~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~---e~g~~~~~~~~v~ 164 (426)
...+.+++.++++++|+||||+|||+|+.++||++...... ++.++ ...++.
T Consensus 71 -----------------------~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~--~~~~~~ 125 (235)
T cd01746 71 -----------------------EGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPD--TPHPVV 125 (235)
T ss_pred -----------------------hhHHHHHHHHHHCCceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCC--CCCCEE
Confidence 11346788899999999999999999999999998754321 11100 112222
Q ss_pred ecccC---------CCCCceEEEEEecCCcccccccccccccceEEEEecccccchh-----c-cCCCeEEEEEeC-CCe
Q 014368 165 HIDYD---------NYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK-----R-LAQRFVPMAFAP-DGL 228 (426)
Q Consensus 165 H~~~~---------~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~-----~-Lp~g~~vlA~s~-dG~ 228 (426)
....+ .+..+.|.|.+.++|.|.++++.. .+.+|++|+|+|. . ++.+++++|++. ||+
T Consensus 126 ~~~~~~~~~~~~~~~~rl~~h~v~i~~~s~l~~~~g~~------~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~ 199 (235)
T cd01746 126 DLMPEQKGVKDLGGTMRLGAYPVILKPGTLAHKYYGKD------EVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGL 199 (235)
T ss_pred EECcccccccccCcccccCceEEEECCCChHHHHhCCC------EEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCe
Confidence 11111 112246999999999999999873 6789999999974 3 378999999998 899
Q ss_pred EEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHH
Q 014368 229 IEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFV 277 (426)
Q Consensus 229 Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv 277 (426)
|||++.++ ++|++|||||||+...+... .+||++|+
T Consensus 200 ieaie~~~------~pf~lgvQ~HPE~~~~~~~~-------~~lF~~fv 235 (235)
T cd01746 200 VEIVELPD------HPFFVGTQFHPEFKSRPLKP-------HPLFVGFV 235 (235)
T ss_pred EEEEEcCC------CCcEEEEECCCCCcCCCCCc-------cHHHHHhC
Confidence 99999986 46777999999998876543 58999995
No 30
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.96 E-value=3.5e-28 Score=257.90 Aligned_cols=185 Identities=25% Similarity=0.361 Sum_probs=145.7
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
..+|+|++..+.+ ...+.++|++.|+.+.++|++.+.+++.+. .+||||||||+. +.|+....
T Consensus 3 ~~~i~vlD~Gsq~--------~~li~r~lrelg~~~~v~p~~~~~~~l~~~--~~dgIIlsGGp~---sv~~~~~p---- 65 (511)
T PRK00074 3 HDKILILDFGSQY--------TQLIARRVRELGVYSEIVPYDISAEEIRAF--NPKGIILSGGPA---SVYEEGAP---- 65 (511)
T ss_pred CCEEEEEECCCCc--------HHHHHHHHHHCCCeEEEEECCCCHHHHhcc--CCCEEEECCCCc---ccccCCCc----
Confidence 4578898876442 234578899999999999998777776542 579999999974 34543211
Q ss_pred hHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccC
Q 014368 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (426)
.+.+.+++.++||||||+|||+|+.++||++.+....++
T Consensus 66 -------------------------~~~~~i~~~~~PvLGIC~G~QlLa~~lGG~V~~~~~~e~---------------- 104 (511)
T PRK00074 66 -------------------------RADPEIFELGVPVLGICYGMQLMAHQLGGKVERAGKREY---------------- 104 (511)
T ss_pred -------------------------cccHHHHhCCCCEEEECHHHHHHHHHhCCeEEecCCccc----------------
Confidence 012334567999999999999999999999877643333
Q ss_pred CCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEE
Q 014368 170 NYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGL 249 (426)
Q Consensus 170 ~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~Gv 249 (426)
+++.+.+..+++|++.++. .+.++.+|++.|.++|++++++|+++++.++|+++.+ .++||+
T Consensus 105 ----G~~~i~i~~~~~Lf~~l~~-------~~~v~~~H~d~V~~lp~g~~vlA~s~~~~v~ai~~~~-------~~i~Gv 166 (511)
T PRK00074 105 ----GRAELEVDNDSPLFKGLPE-------EQDVWMSHGDKVTELPEGFKVIASTENCPIAAIANEE-------RKFYGV 166 (511)
T ss_pred ----ceEEEEEcCCChhhhcCCC-------ceEEEEECCeEEEecCCCcEEEEEeCCCCEEEEEeCC-------CCEEEE
Confidence 2677888778888887765 4678889999999999999999999999999999875 679999
Q ss_pred cccCCccCCCCCCCCCCCCcHHHHHHHHH
Q 014368 250 QFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (426)
Q Consensus 250 QFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (426)
|||||++.++.+ ..+|++|+.
T Consensus 167 QFHPE~~~t~~G--------~~il~nFl~ 187 (511)
T PRK00074 167 QFHPEVTHTPQG--------KKLLENFVF 187 (511)
T ss_pred eCCCCcCCchhH--------HHHHHHHHH
Confidence 999999987766 589999984
No 31
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.95 E-value=1.2e-27 Score=250.93 Aligned_cols=216 Identities=20% Similarity=0.252 Sum_probs=154.8
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCC---EEEEEcCCCChhhhh---hhcCCCCEEEECCCCCCCCCccccc
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA---VPAIVPRVSGVHMLL---DSFEPIHGVLLCEGEDIDPSLYEAE 83 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga---~~vivp~~~~~~~l~---~~le~~DGVILsGG~didp~~y~~~ 83 (426)
.++|+++.-+..... .| .+++++|..+|+ ..+.+.|....+... +.|+.+||||||||++ ++..
T Consensus 289 ~v~IalVGKY~~~~d---aY--~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G-~~~~---- 358 (525)
T TIGR00337 289 EVTIGIVGKYVELKD---SY--LSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFG-ERGV---- 358 (525)
T ss_pred CcEEEEEeCCcCCHH---HH--HHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCC-Chhh----
Confidence 478888877643111 23 367889999886 223333332222211 2367899999999974 2210
Q ss_pred CCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccch---hhhcccCCCC
Q 014368 84 TSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIE---KEVSRKCPEN 160 (426)
Q Consensus 84 ~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~---~e~g~~~~~~ 160 (426)
...+.++++++++++|+||||+|||+|+.++|++++.... .|+.+. ..
T Consensus 359 ---------------------------~g~i~ai~~a~e~~iP~LGIClG~Qll~i~~grnv~gl~~A~s~Ef~~~--~~ 409 (525)
T TIGR00337 359 ---------------------------EGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPE--TK 409 (525)
T ss_pred ---------------------------cChHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCCCCCCccccCCC--CC
Confidence 1124578899999999999999999999999999876432 344321 23
Q ss_pred cceeecccCC---------CCCceEEEEEecCCcccccccccccc--cceEEEEecccccchhccCCCeEEEEEeCC-Ce
Q 014368 161 QRVVHIDYDN---------YDGHRHVVKVVKDTPLHDWFKDSLEE--EKMEIWVNSYHHQGVKRLAQRFVPMAFAPD-GL 228 (426)
Q Consensus 161 ~~v~H~~~~~---------~~g~~~~V~v~~~s~L~~~~~~~~~~--~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~d-G~ 228 (426)
+++....... ...+.|+|.+.++|.+.++++...+. .+|.|.||+.|+++++. ++++++|+++| |.
T Consensus 410 ~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~gS~L~~iyG~~~i~erhrHry~VNs~h~q~l~~--~GL~vsa~s~Dgg~ 487 (525)
T TIGR00337 410 YPVVDLLPEQKDISDLGGTMRLGLYPCILKPGTLAFKLYGKEEVYERHRHRYEVNNEYREQLEN--KGLIVSGTSPDGRL 487 (525)
T ss_pred CCeeeccCcccccccCCceeeccceEEEECCCChHHHHhCCCceeecccceEEECHHHHHhhhh--CCeEEEEEECCCCE
Confidence 4443322211 12468999999999999999875332 24889999999999986 89999999988 59
Q ss_pred EEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHH
Q 014368 229 IEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKA 279 (426)
Q Consensus 229 Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a 279 (426)
||||++++ ++|++|||||||+.+.+..+ .+||++|++|
T Consensus 488 VEaIE~~~------hpfflGVQwHPE~~s~p~~~-------~~LF~~FV~A 525 (525)
T TIGR00337 488 VEIIELPD------HPFFVACQFHPEFTSRPNRP-------HPLFLGFVKA 525 (525)
T ss_pred EEEEEECC------CCeEEEEecCCCCCCCCCch-------hHHHHHHHhC
Confidence 99999987 57888999999999887654 6999999874
No 32
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.95 E-value=3e-27 Score=232.52 Aligned_cols=201 Identities=20% Similarity=0.257 Sum_probs=141.6
Q ss_pred EEEEccCcCCc---ccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCC-CCCCCcccccCCCCC
Q 014368 13 VLIVSRRSVRK---NKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGE-DIDPSLYEAETSNLS 88 (426)
Q Consensus 13 igI~~~~~~~~---~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~-didp~~y~~~~~~~~ 88 (426)
|||++++.... ....+|+..+|+++++++|+.+++|+.+.+.+.+.+.++.+||||++||+ ++++.-|..
T Consensus 1 igil~~~~~~~~~~~~~~~yi~~~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~------ 74 (273)
T cd01747 1 IGILTQPVDGAGSNKTGHSYIAASYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYAR------ 74 (273)
T ss_pred CeEEeeecCccccccchhHHHHHHHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccccch------
Confidence 79999876432 23467999999999999999988888776667888888999999999996 664322211
Q ss_pred hhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcC-----CCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcce
Q 014368 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERN-----IPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRV 163 (426)
Q Consensus 89 ~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~-----iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v 163 (426)
.+..+++.+++.+ +||||||+|||+|+.++||++.... ...
T Consensus 75 -----------------------~~~~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~~gg~~~~~~--~~~--------- 120 (273)
T cd01747 75 -----------------------TAKIIYNLALERNDAGDYFPVWGTCLGFELLTYLTSGETLLLE--ATE--------- 120 (273)
T ss_pred -----------------------HHHHHHHHHHHhhhcCCCCcEEEEcHHHHHHHHHhCCCccccC--CCc---------
Confidence 1235666666553 8999999999999999998742111 110
Q ss_pred eecccCCCCCceEEEEEec---CCccccccccccccc-ceEEEEecccccchh--ccC------CCeEEEEEeCC--C--
Q 014368 164 VHIDYDNYDGHRHVVKVVK---DTPLHDWFKDSLEEE-KMEIWVNSYHHQGVK--RLA------QRFVPMAFAPD--G-- 227 (426)
Q Consensus 164 ~H~~~~~~~g~~~~V~v~~---~s~L~~~~~~~~~~~-~~~~~Vns~H~~~V~--~Lp------~g~~vlA~s~d--G-- 227 (426)
.| +...+|.+++ ++++|+.++.++... .....+..+|+++|+ .++ ..|++++++.| |
T Consensus 121 ~~-------~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l~~~~~vla~~~d~~g~~ 193 (273)
T cd01747 121 AT-------NSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLSDFFNVLTTNDDWNGVE 193 (273)
T ss_pred cc-------cceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhcccccccccceEEEEEEecCCCce
Confidence 01 2356677665 477887776543221 112345567888884 333 46789999865 5
Q ss_pred eEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCC
Q 014368 228 LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYP 267 (426)
Q Consensus 228 ~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~ 267 (426)
+|+++++++ .|++|+|||||+...+.+....+|
T Consensus 194 fis~ie~~~-------~pi~gvQFHPEks~few~~~~~~~ 226 (273)
T cd01747 194 FISTVEAYK-------YPIYGVQWHPEKNAFEWKKSSSIP 226 (273)
T ss_pred EEEEEEecC-------CceEEEecCCCcccccccccCCCC
Confidence 689999986 789999999999988777533344
No 33
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.95 E-value=5.1e-27 Score=220.69 Aligned_cols=187 Identities=25% Similarity=0.334 Sum_probs=143.8
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCC-CEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYG-AVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~G-a~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
.+|+|+...+. | ...+.++++..| ....++|++.+.+.+.. ..+|||||+||| .+.|++++ +++
T Consensus 2 ~~ilIld~g~q-------~-~~li~r~~re~g~v~~e~~~~~~~~~~~~~--~~~~giIlsGgp---~sv~~~~~--w~~ 66 (198)
T COG0518 2 RKILILDFGGQ-------Y-LGLIARRLRELGYVYSEIVPYTGDAEELPL--DSPDGIIISGGP---MSVYDEDP--WLP 66 (198)
T ss_pred cEEEEEeCCCc-------H-hHHHHHHHHHcCCceEEEEeCCCCcccccc--cCCCEEEEcCCC---CCCccccc--cch
Confidence 46788776642 1 234577899999 88889999888777654 356999999998 35566553 111
Q ss_pred hHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccC
Q 014368 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (426)
. +...|..+...++||||||+|||+|+.++||+|.++...|+|
T Consensus 67 ~----------------------~~~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~~~~E~G--------------- 109 (198)
T COG0518 67 R----------------------EKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVERGPKREIG--------------- 109 (198)
T ss_pred h----------------------HHHHHHHhCCCCCCEEEEChhHHHHHHHhCCEEeccCCCccc---------------
Confidence 1 234555555566789999999999999999999987545654
Q ss_pred CCCCceEEEEEec-CCcccccccccccccceEE-EEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEE
Q 014368 170 NYDGHRHVVKVVK-DTPLHDWFKDSLEEEKMEI-WVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIM 247 (426)
Q Consensus 170 ~~~g~~~~V~v~~-~s~L~~~~~~~~~~~~~~~-~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~ 247 (426)
+.+|++.+ .+++++.++. .. .|+.+|.+.|++||++++++|.++.+.++|+++. +++|
T Consensus 110 -----~~~v~~~~~~~~l~~gl~~-------~~~~v~~sH~D~v~~lP~g~~vlA~s~~cp~qa~~~~--------~~~~ 169 (198)
T COG0518 110 -----WTPVELTEGDDPLFAGLPD-------LFTTVFMSHGDTVVELPEGAVVLASSETCPNQAFRYG--------KRAY 169 (198)
T ss_pred -----eEEEEEecCccccccCCcc-------ccCccccchhCccccCCCCCEEEecCCCChhhheecC--------CcEE
Confidence 78898884 4467877665 33 5899999999999999999999999999999986 5799
Q ss_pred EEcccCCccCCCCCCCCCCCCcHHHHHHHHH
Q 014368 248 GLQFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (426)
Q Consensus 248 GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (426)
|+|||||.++. .+ ..++++|..
T Consensus 170 gvQFHpEv~~~-~~--------~~~l~nf~~ 191 (198)
T COG0518 170 GVQFHPEVTHE-YG--------EALLENFAH 191 (198)
T ss_pred EEeeeeEEeHH-HH--------HHHHHHhhh
Confidence 99999999883 33 588899984
No 34
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.94 E-value=7.2e-26 Score=231.27 Aligned_cols=170 Identities=25% Similarity=0.422 Sum_probs=126.5
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHH
Q 014368 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (426)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~ 112 (426)
..+++|.++|+.++++|++.+.+++... .+|||||+|||+ +|..+. .
T Consensus 205 ni~~~L~~~G~~v~vvp~~~~~~~i~~~--~~dgIilSgGPg-~p~~~~------------------------------~ 251 (382)
T CHL00197 205 NILRRLKSFGCSITVVPATSPYQDILSY--QPDGILLSNGPG-DPSAIH------------------------------Y 251 (382)
T ss_pred HHHHHHHHCCCeEEEEcCCCCHHHHhcc--CCCEEEEcCCCC-ChhHHH------------------------------H
Confidence 4788999999999999998887776442 699999999985 443110 1
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEecCCcccccccc
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKD 192 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~~~ 192 (426)
....++.+++.++|+||||+|||+|+.++||++++.. +|++ +..|++... +.
T Consensus 252 ~i~~i~~~~~~~~PilGIClGhQlLa~a~Gg~v~k~~---~Gh~----------------g~n~pv~~~---------~~ 303 (382)
T CHL00197 252 GIKTVKKLLKYNIPIFGICMGHQILSLALEAKTFKLK---FGHR----------------GLNHPSGLN---------QQ 303 (382)
T ss_pred HHHHHHHHHhCCCCEEEEcHHHHHHHHHhCCEEeccC---CCCC----------------CCCEecCCC---------Cc
Confidence 1345667777789999999999999999999988753 3311 224444311 11
Q ss_pred cccccceEEEEecccccchh--ccCC-CeEEEEEe-CCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCC
Q 014368 193 SLEEEKMEIWVNSYHHQGVK--RLAQ-RFVPMAFA-PDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPG 268 (426)
Q Consensus 193 ~~~~~~~~~~Vns~H~~~V~--~Lp~-g~~vlA~s-~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~ 268 (426)
...++++|++++. .++. ++.+++++ +||.||||++++ .|+||||||||...++.+.
T Consensus 304 -------v~itsq~H~~~v~~~sv~~~~~~vt~~~~nDgtvegi~h~~-------~pi~gVQFHPE~~~gp~d~------ 363 (382)
T CHL00197 304 -------VEITSQNHGFAVNLESLAKNKFYITHFNLNDGTVAGISHSP-------KPYFSVQYHPEASPGPHDA------ 363 (382)
T ss_pred -------eEEeecchheEeeccccCCCCcEEEEEECCCCCEEEEEECC-------CCcEEEeeCCCCCCCCCCH------
Confidence 2233467888874 4554 69999987 799999999997 7899999999999887653
Q ss_pred cHHHHHHHHHHHHHHH
Q 014368 269 CPSAYQEFVKAVIAYQ 284 (426)
Q Consensus 269 ~~~lf~~Fv~av~~~~ 284 (426)
..+|++|++.++..+
T Consensus 364 -~~lf~~Fv~~~~~~~ 378 (382)
T CHL00197 364 -DYLFEYFIEIIKHSK 378 (382)
T ss_pred -HHHHHHHHHHHHhhh
Confidence 579999999887543
No 35
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.94 E-value=1.6e-26 Score=246.43 Aligned_cols=186 Identities=19% Similarity=0.298 Sum_probs=137.8
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCE-EEEE-cCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAV-PAIV-PRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~-~viv-p~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
+|+|+++.++++++++ +.+++.|+. +.++ |++.+.+.+.. ..+|||||+|||+ +|.. +
T Consensus 1 ~il~idn~dsft~nl~--------~~l~~~g~~~v~~~~~~~~~~~~~~~--~~~d~vIlsgGP~-~p~~--~------- 60 (534)
T PRK14607 1 MIILIDNYDSFTYNIY--------QYIGELGPEEIEVVRNDEITIEEIEA--LNPSHIVISPGPG-RPEE--A------- 60 (534)
T ss_pred CEEEEECchhHHHHHH--------HHHHHcCCCeEEEECCCCCCHHHHHh--cCCCEEEECCCCC-Chhh--C-------
Confidence 4899999988766654 458888986 4444 55555555533 2589999999986 3321 1
Q ss_pred hHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccC
Q 014368 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (426)
..+..+++. ++.++||||||+|||+|+.++||++.+....+.
T Consensus 61 ---------------------~~~~~li~~-~~~~~PvLGIClG~QlLa~a~Gg~V~~~~~~~~---------------- 102 (534)
T PRK14607 61 ---------------------GISVEVIRH-FSGKVPILGVCLGHQAIGYAFGGKIVHAKRILH---------------- 102 (534)
T ss_pred ---------------------CccHHHHHH-hhcCCCEEEEcHHHHHHHHHcCCeEecCCcccc----------------
Confidence 112345555 467899999999999999999999987643222
Q ss_pred CCCCceEEEEEecCCcccccccccccccceEEEEecccccchh--ccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEE
Q 014368 170 NYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIM 247 (426)
Q Consensus 170 ~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~--~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~ 247 (426)
|..+.+... ++.++..++. .+.++++|++.|+ .+|.+++++|+++||.|+||++++ .++|
T Consensus 103 ---G~~~~v~~~-~~~lf~~~~~-------~~~v~~~Hs~~v~~~~lp~~~~vlA~s~d~~i~a~~~~~-------~pi~ 164 (534)
T PRK14607 103 ---GKTSPIDHN-GKGLFRGIPN-------PTVATRYHSLVVEEASLPECLEVTAKSDDGEIMGIRHKE-------HPIF 164 (534)
T ss_pred ---CCceeEEEC-CCcchhcCCC-------CcEEeeccchheecccCCCCeEEEEEcCCCCEEEEEECC-------CCEE
Confidence 224455443 4556666654 4678999999985 599999999999999999999986 6799
Q ss_pred EEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014368 248 GLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 248 GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
|||||||+..++.+ ..+|++|++.+.
T Consensus 165 GvQFHPE~~~t~~g--------~~i~~nFl~~~~ 190 (534)
T PRK14607 165 GVQFHPESILTEEG--------KRILKNFLNYQR 190 (534)
T ss_pred EEEeCCCCCCChhH--------HHHHHHHHHHhh
Confidence 99999998876655 589999998774
No 36
>PRK13566 anthranilate synthase; Provisional
Probab=99.94 E-value=5.5e-26 Score=248.55 Aligned_cols=193 Identities=24% Similarity=0.246 Sum_probs=148.7
Q ss_pred CCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCC
Q 014368 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLS 88 (426)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~ 88 (426)
.-++|+|++..+.+. ....+++++.|+.+++++++.+.+.+.. ..+|||||+||++ +|..+
T Consensus 525 ~g~~IlvID~~dsf~--------~~l~~~Lr~~G~~v~vv~~~~~~~~~~~--~~~DgVVLsgGpg-sp~d~-------- 585 (720)
T PRK13566 525 EGKRVLLVDHEDSFV--------HTLANYFRQTGAEVTTVRYGFAEEMLDR--VNPDLVVLSPGPG-RPSDF-------- 585 (720)
T ss_pred CCCEEEEEECCCchH--------HHHHHHHHHCCCEEEEEECCCChhHhhh--cCCCEEEECCCCC-ChhhC--------
Confidence 346888888775432 3456779999999999998766544432 3699999999975 23210
Q ss_pred hhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeeccc
Q 014368 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDY 168 (426)
Q Consensus 89 ~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~ 168 (426)
.+..+++.++++++||||||+|||+|+.++||++.+....+ |
T Consensus 586 -----------------------~~~~lI~~a~~~~iPILGIClG~QlLa~alGG~V~~~~~~~------------~--- 627 (720)
T PRK13566 586 -----------------------DCKATIDAALARNLPIFGVCLGLQAIVEAFGGELGQLAYPM------------H--- 627 (720)
T ss_pred -----------------------CcHHHHHHHHHCCCcEEEEehhHHHHHHHcCCEEEECCCCc------------c---
Confidence 12468889999999999999999999999999998753211 1
Q ss_pred CCCCCceEEEEEecCCcccccccccccccceEEEEecccccchh--ccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcE
Q 014368 169 DNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFI 246 (426)
Q Consensus 169 ~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~--~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i 246 (426)
|.+++|.+..++++++.++. .+.++.+|++.+. .+|++++++|+++||.|+||++++ .++
T Consensus 628 ----G~~~~V~v~~~~~Lf~~lp~-------~~~v~~~Hs~~v~~~~Lp~~~~vlA~s~dg~V~ai~~~~-------~pi 689 (720)
T PRK13566 628 ----GKPSRIRVRGPGRLFSGLPE-------EFTVGRYHSLFADPETLPDELLVTAETEDGVIMAIEHKT-------LPV 689 (720)
T ss_pred ----CCceEEEECCCCchhhcCCC-------CCEEEEecceeEeeccCCCceEEEEEeCCCcEEEEEECC-------CCE
Confidence 34678888888888887776 5788899998764 499999999999999999999986 689
Q ss_pred EEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014368 247 MGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 247 ~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
+|||||||+..+-.+. .-.+||+||++.|.
T Consensus 690 ~GVQFHPE~i~t~~~~-----~G~~ii~nfl~~~~ 719 (720)
T PRK13566 690 AAVQFHPESIMTLGGD-----VGLRIIENVVRLLA 719 (720)
T ss_pred EEEeccCeeCCcCCch-----hHHHHHHHHHHHhh
Confidence 9999999997652211 12699999998874
No 37
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.94 E-value=4.2e-26 Score=211.52 Aligned_cols=175 Identities=27% Similarity=0.440 Sum_probs=132.4
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhH
Q 014368 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (426)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~ 111 (426)
....+++++.|..+.+++++.+.....+.+..+|||||+||+. ++ |+ -.
T Consensus 11 ~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~-~~--~d----------------------------~~ 59 (192)
T PF00117_consen 11 HSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPG-SP--YD----------------------------IE 59 (192)
T ss_dssp HHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESS-ST--TS----------------------------HH
T ss_pred HHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCC-cc--cc----------------------------cc
Confidence 4467789999999999998765444422467899999999974 11 11 02
Q ss_pred HHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEecCCccccccc
Q 014368 112 IELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFK 191 (426)
Q Consensus 112 ~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~~ 191 (426)
.+..++++++++++|+||||+|||+|+.++||++.+... . .+. |....+...+.++++...+
T Consensus 60 ~~~~~i~~~~~~~~PilGIC~G~Q~la~~~G~~v~~~~~--~----------~~~------g~~~~~~~~~~~~~~~~~~ 121 (192)
T PF00117_consen 60 GLIELIREARERKIPILGICLGHQILAHALGGKVVPSPE--K----------PHH------GGNIPISETPEDPLFYGLP 121 (192)
T ss_dssp HHHHHHHHHHHTTSEEEEETHHHHHHHHHTTHEEEEEES--E----------EEE------EEEEEEEEEEEHGGGTTST
T ss_pred ccccccccccccceEEEEEeehhhhhHHhcCCccccccc--c----------ccc------ccccccccccccccccccc
Confidence 246788999999999999999999999999999886531 1 111 2244454443346666555
Q ss_pred ccccccceEEEEecccccchhc---cCCCeEEEEEeCCC-eEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCC
Q 014368 192 DSLEEEKMEIWVNSYHHQGVKR---LAQRFVPMAFAPDG-LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYP 267 (426)
Q Consensus 192 ~~~~~~~~~~~Vns~H~~~V~~---Lp~g~~vlA~s~dG-~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~ 267 (426)
+ .+.+..+|++.|.. +|.+++++|++.++ .++++.+.+ .+++|+|||||.+.++.+
T Consensus 122 ~-------~~~~~~~H~~~v~~~~~~p~~~~~la~s~~~~~~~~~~~~~-------~~i~g~QfHPE~~~~~~~------ 181 (192)
T PF00117_consen 122 E-------SFKAYQYHSDAVNPDDLLPEGFEVLASSSDGCPIQAIRHKD-------NPIYGVQFHPEFSSSPGG------ 181 (192)
T ss_dssp S-------EEEEEEEECEEEEEGHHHHTTEEEEEEETTTTEEEEEEECT-------TSEEEESSBTTSTTSTTH------
T ss_pred c-------ccccccccceeeecccccccccccccccccccccccccccc-------cEEEEEecCCcCCCCCCc------
Confidence 5 67888999999998 99999999999776 899999986 579999999999998865
Q ss_pred CcHHHHHHHH
Q 014368 268 GCPSAYQEFV 277 (426)
Q Consensus 268 ~~~~lf~~Fv 277 (426)
..++.+|+
T Consensus 182 --~~~l~nf~ 189 (192)
T PF00117_consen 182 --PQLLKNFF 189 (192)
T ss_dssp --HHHHHHHH
T ss_pred --chhhhhee
Confidence 36777775
No 38
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.93 E-value=5.1e-26 Score=241.89 Aligned_cols=187 Identities=20% Similarity=0.259 Sum_probs=136.2
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCC----hhhhhhhcCCCCEEEECCCCCCCCCcccccCCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG----VHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSN 86 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~----~~~l~~~le~~DGVILsGG~didp~~y~~~~~~ 86 (426)
.+|+|+++.+++++++++ .++..|+.+++++.+.. .+++.. ..+|+|||+|||+ +|. +...
T Consensus 2 ~~iLiIDn~dsft~nl~~--------~lr~~g~~v~V~~~~~~~~~~~~~l~~--~~~~~IIlSpGPg-~p~--d~~~-- 66 (531)
T PRK09522 2 ADILLLDNIDSFTYNLAD--------QLRSNGHNVVIYRNHIPAQTLIERLAT--MSNPVLMLSPGPG-VPS--EAGC-- 66 (531)
T ss_pred CeEEEEeCCChHHHHHHH--------HHHHCCCCEEEEECCCCCccCHHHHHh--cCcCEEEEcCCCC-Chh--hCCC--
Confidence 478999999887665544 46778998888886533 222221 2478999999986 342 1100
Q ss_pred CChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeec
Q 014368 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHI 166 (426)
Q Consensus 87 ~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~ 166 (426)
...+++. +..++||||||+|||+|+.++||+|.+..... |
T Consensus 67 --------------------------~~~i~~~-~~~~iPILGIClG~QlLa~a~GG~V~~~~~~~------------~- 106 (531)
T PRK09522 67 --------------------------MPELLTR-LRGKLPIIGICLGHQAIVEAYGGYVGQAGEIL------------H- 106 (531)
T ss_pred --------------------------CHHHHHH-HhcCCCEEEEcHHHHHHHHhcCCEEEeCCcee------------e-
Confidence 0123332 34689999999999999999999998753211 1
Q ss_pred ccCCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcE
Q 014368 167 DYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFI 246 (426)
Q Consensus 167 ~~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i 246 (426)
|....+.. .+..++..++. .+.|+.||++.+..+|++++++|+ .|+.|+++++++ .++
T Consensus 107 ------G~~~~i~~-~~~~lf~~~~~-------~~~v~~~Hs~~v~~lP~~l~vlA~-sd~~v~ai~~~~-------~~i 164 (531)
T PRK09522 107 ------GKASSIEH-DGQAMFAGLTN-------PLPVARYHSLVGSNIPAGLTINAH-FNGMVMAVRHDA-------DRV 164 (531)
T ss_pred ------eeEEEEee-cCCccccCCCC-------CcEEEEehheecccCCCCcEEEEe-cCCCEEEEEECC-------CCE
Confidence 11233333 23456655554 578999999999999999999997 588999999986 789
Q ss_pred EEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 014368 247 MGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIA 282 (426)
Q Consensus 247 ~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~ 282 (426)
||||||||+..++.| ..+++||++.|..
T Consensus 165 ~GVQFHPEs~~T~~G--------~~il~NFl~~~~~ 192 (531)
T PRK09522 165 CGFQFHPESILTTQG--------ARLLEQTLAWAQQ 192 (531)
T ss_pred EEEEecCccccCcch--------HHHHHHHHHHHhh
Confidence 999999999999888 5999999998763
No 39
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.93 E-value=3e-25 Score=227.72 Aligned_cols=157 Identities=27% Similarity=0.388 Sum_probs=121.8
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhH
Q 014368 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (426)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~ 111 (426)
...+++|.+.|+.++++|++.+.+++... .+|||||+|||+ ||..+. +
T Consensus 252 ~nIlr~L~~~G~~v~VvP~~~~~~ei~~~--~pDGIiLSnGPG-DP~~~~------------~----------------- 299 (415)
T PLN02771 252 HNILRRLASYGCKITVVPSTWPASEALKM--KPDGVLFSNGPG-DPSAVP------------Y----------------- 299 (415)
T ss_pred HHHHHHHHHcCCeEEEECCCCCHHHHhhc--CCCEEEEcCCCC-ChhHhh------------H-----------------
Confidence 34788999999999999998887776542 699999999985 453211 0
Q ss_pred HHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEecCCccccccc
Q 014368 112 IELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFK 191 (426)
Q Consensus 112 ~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~~ 191 (426)
....++.++ .++||||||+|||+|+.++||++++.. +|++ |.+|+|......
T Consensus 300 -~ie~ik~l~-~~iPIlGICLGhQlLa~AlGGkv~K~~---~Gh~----------------G~n~pV~~~~~~------- 351 (415)
T PLN02771 300 -AVETVKELL-GKVPVFGICMGHQLLGQALGGKTFKMK---FGHH----------------GGNHPVRNNRTG------- 351 (415)
T ss_pred -HHHHHHHHH-hCCCEEEEcHHHHHHHHhcCCeEEECC---CCcc----------------cceEEEEECCCC-------
Confidence 123445444 479999999999999999999999863 3321 446777653221
Q ss_pred ccccccceEEEEecccccch--hccCCCeEEEEEe-CCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCC
Q 014368 192 DSLEEEKMEIWVNSYHHQGV--KRLAQRFVPMAFA-PDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSD 262 (426)
Q Consensus 192 ~~~~~~~~~~~Vns~H~~~V--~~Lp~g~~vlA~s-~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~ 262 (426)
. .+.++++|+++| +.||.++++++++ +||.|||+++++ .+++|||||||...+|.+.
T Consensus 352 ~-------v~itsqnHg~aVd~~sLp~~~~vt~~nlnDgtvegi~~~~-------~pi~gVQFHPEa~pgp~Ds 411 (415)
T PLN02771 352 R-------VEISAQNHNYAVDPASLPEGVEVTHVNLNDGSCAGLAFPA-------LNVMSLQYHPEASPGPHDS 411 (415)
T ss_pred C-------EEEEecCHHHhhccccCCCceEEEEEeCCCCcEEEEEECC-------CCEEEEEcCCCCCCCCCcC
Confidence 1 345778999999 5699999999998 799999999997 8999999999999988764
No 40
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.93 E-value=3.8e-25 Score=205.02 Aligned_cols=162 Identities=25% Similarity=0.275 Sum_probs=121.7
Q ss_pred hhHHHHHHHHCC---CEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccc
Q 014368 31 GEYHLDLIVGYG---AVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDK 107 (426)
Q Consensus 31 ~~~yl~~l~~~G---a~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~ 107 (426)
...|.++++++| ..+.+++...... ...++.+|||||+||+. ++ .++.. .|++
T Consensus 13 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~~~~~~dgvil~Gg~~-~~-~~~~~---------~~~~----------- 68 (188)
T cd01741 13 PGLFEDLLREAGAETIEIDVVDVYAGEL--LPDLDDYDGLVILGGPM-SV-DEDDY---------PWLK----------- 68 (188)
T ss_pred cchHHHHHHhcCCCCceEEEEecCCCCC--CCCcccCCEEEECCCCc-cC-CccCC---------hHHH-----------
Confidence 567888999999 4666666544322 33467899999999973 22 12211 2322
Q ss_pred hhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEecCC---
Q 014368 108 EKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDT--- 184 (426)
Q Consensus 108 ~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s--- 184 (426)
.+..+++.+.++++|+||||+|+|+|+.++||++.+.... .+ .+++++.++.+.
T Consensus 69 ----~~~~~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~~------------~~-------~g~~~v~~~~~~~~~ 125 (188)
T cd01741 69 ----KLKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNPKG------------WE-------IGWFPVTLTEAGKAD 125 (188)
T ss_pred ----HHHHHHHHHHHCCCCEEEECccHHHHHHHhCCEEecCCCc------------ce-------eEEEEEEeccccccC
Confidence 2467889999999999999999999999999998876421 01 247778876543
Q ss_pred cccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcccCC
Q 014368 185 PLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPE 254 (426)
Q Consensus 185 ~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQFHPE 254 (426)
++++.++. .+.++.+|++.|..+|++++++|+++++.|++++.+ .+++|+|||||
T Consensus 126 ~l~~~~~~-------~~~v~~~H~~~v~~lp~~~~~la~~~~~~v~~~~~~--------~~~~g~QfHPE 180 (188)
T cd01741 126 PLFAGLPD-------EFPVFHWHGDTVVELPPGAVLLASSEACPNQAFRYG--------DRALGLQFHPE 180 (188)
T ss_pred chhhcCCC-------cceEEEEeccChhhCCCCCEEeecCCCCCcceEEec--------CCEEEEccCch
Confidence 34444443 578999999999999999999999999999999986 57999999999
No 41
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.93 E-value=2.6e-25 Score=242.94 Aligned_cols=193 Identities=22% Similarity=0.260 Sum_probs=145.2
Q ss_pred CCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCC
Q 014368 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLS 88 (426)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~ 88 (426)
..++|+|++..+.+. ....+++...|+.+.++++....+ +.+. ..+|||||+||++ +|..+
T Consensus 515 ~~~~IlVID~gds~~--------~~l~~~L~~~G~~v~vv~~~~~~~-~~~~-~~~DgLILsgGPG-sp~d~-------- 575 (717)
T TIGR01815 515 EGRRILLVDHEDSFV--------HTLANYLRQTGASVTTLRHSHAEA-AFDE-RRPDLVVLSPGPG-RPADF-------- 575 (717)
T ss_pred CCCEEEEEECCChhH--------HHHHHHHHHCCCeEEEEECCCChh-hhhh-cCCCEEEEcCCCC-Cchhc--------
Confidence 447888887664432 345777999999999998764433 3222 4699999999975 23210
Q ss_pred hhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeeccc
Q 014368 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDY 168 (426)
Q Consensus 89 ~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~ 168 (426)
.+..+++.+++.++||||||+|||+|+.++||++.+.... |.
T Consensus 576 -----------------------~~~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~~~p-------------~~-- 617 (717)
T TIGR01815 576 -----------------------DVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLPEP-------------VH-- 617 (717)
T ss_pred -----------------------ccHHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEECCCC-------------ee--
Confidence 1135778888899999999999999999999998865321 11
Q ss_pred CCCCCceEEEEEecCCcccccccccccccceEEEEecccccch--hccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcE
Q 014368 169 DNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGV--KRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFI 246 (426)
Q Consensus 169 ~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V--~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i 246 (426)
|.+.+|.+..+++++..++. .+.|+.||++.+ ..+|++++++|++++|.|+||++++ .++
T Consensus 618 ----G~~~~V~~~~~~~Lf~~lp~-------~~~v~~~HS~~~~~~~LP~~~~vlA~s~d~~v~Ai~~~~-------~~i 679 (717)
T TIGR01815 618 ----GKASRIRVLGPDALFAGLPE-------RLTVGRYHSLFARRDRLPAELTVTAESADGLIMAIEHRR-------LPL 679 (717)
T ss_pred ----CcceEEEECCCChhhhcCCC-------CCEEEEECCCCcccccCCCCeEEEEEeCCCcEEEEEECC-------CCE
Confidence 23566777767788887776 578889999876 5689999999999999999999986 779
Q ss_pred EEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014368 247 MGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 247 ~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
+|||||||+..+..+. ....|++||+..+.
T Consensus 680 ~GVQFHPEsi~T~sg~-----~G~~ilkNfl~~~~ 709 (717)
T TIGR01815 680 AAVQFHPESIMTLDGG-----AGLAMIGNVVDRLA 709 (717)
T ss_pred EEEEeCCeeCCccCch-----hHHHHHHHHHHHHh
Confidence 9999999997665432 13689999998774
No 42
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.93 E-value=2.1e-25 Score=215.26 Aligned_cols=156 Identities=22% Similarity=0.254 Sum_probs=116.8
Q ss_pred HHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHH
Q 014368 37 LIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRL 116 (426)
Q Consensus 37 ~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~l 116 (426)
.+...|....++....+ +.+. .++.+|||||+||+. +.|++. +|+.+ +..+
T Consensus 30 ~~~~~~~~~~~~~~~~~-~~~p-~~~~~dgvvi~Gg~~---~~~d~~---------~w~~~---------------~~~~ 80 (237)
T PRK09065 30 ALGLAEQPVVVVRVFAG-EPLP-APDDFAGVIITGSWA---MVTDRL---------DWSER---------------TADW 80 (237)
T ss_pred HhccCCceEEEEeccCC-CCCC-ChhhcCEEEEeCCCc---ccCCCc---------hhHHH---------------HHHH
Confidence 34446776666554332 2222 246799999999973 234432 24432 3578
Q ss_pred HHHHHHcCCCEEEEehHHHHHHHHhCCcccccch-hhhcccCCCCcceeecccCCCCCceEEEEEecC---Ccccccccc
Q 014368 117 AKLCLERNIPYLGICRGSQVLNVACGGTLYQDIE-KEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKD---TPLHDWFKD 192 (426)
Q Consensus 117 ir~ale~~iPILGIClG~QlLava~GG~l~~~~~-~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~---s~L~~~~~~ 192 (426)
++.+++.++||||||+|||+|+.++||++.++.. .+ .+++.|.+++. .++++.+++
T Consensus 81 i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~g~e--------------------~G~~~v~~~~~~~~~~l~~~~~~ 140 (237)
T PRK09065 81 LRQAAAAGMPLLGICYGHQLLAHALGGEVGYNPAGRE--------------------SGTVTVELHPAAADDPLFAGLPA 140 (237)
T ss_pred HHHHHHCCCCEEEEChhHHHHHHHcCCccccCCCCCc--------------------cceEEEEEccccccChhhhcCCc
Confidence 8999999999999999999999999999886532 12 23677877653 456666655
Q ss_pred cccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcccCCcc
Q 014368 193 SLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERM 256 (426)
Q Consensus 193 ~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~ 256 (426)
.+.++++|++.|..+|++++++|+++++.|+|++++ .+++|+|||||.+
T Consensus 141 -------~~~v~~~H~d~v~~lp~~~~~la~s~~~~iqa~~~~--------~~i~gvQfHPE~~ 189 (237)
T PRK09065 141 -------QFPAHLTHLQSVLRLPPGAVVLARSAQDPHQAFRYG--------PHAWGVQFHPEFT 189 (237)
T ss_pred -------cCcEeeehhhhhhhCCCCCEEEEcCCCCCeeEEEeC--------CCEEEEEeCCcCC
Confidence 578899999999999999999999999999999986 4699999999975
No 43
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.93 E-value=3.4e-25 Score=245.14 Aligned_cols=199 Identities=23% Similarity=0.369 Sum_probs=147.6
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHC-CCEEEEEcCCC-Chhhhhhh---cCCCCEEEECCCCCCCCCcccccCCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGY-GAVPAIVPRVS-GVHMLLDS---FEPIHGVLLCEGEDIDPSLYEAETSN 86 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~-Ga~~vivp~~~-~~~~l~~~---le~~DGVILsGG~didp~~y~~~~~~ 86 (426)
+|++++++++++++++++ |... |+.|++++++. +.+++... +..+|||||+|||+ +|..-
T Consensus 83 ~iLlIDnyDSfTyNL~~~--------L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG-~P~~~------ 147 (918)
T PLN02889 83 RTLLIDNYDSYTYNIYQE--------LSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPG-SPTCP------ 147 (918)
T ss_pred eEEEEeCCCchHHHHHHH--------HHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCC-Cccch------
Confidence 699999999998888777 4444 89999988764 45554321 34689999999986 44310
Q ss_pred CChhHHHHHHhhcCCCccccchhh-HHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceee
Q 014368 87 LSPEELEEIRRLHTSDTAIDKEKD-SIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVH 165 (426)
Q Consensus 87 ~~~e~~~~ir~~h~~~~~~d~~rd-~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H 165 (426)
.| .+...++..+ .++||||||+|||+|+.++||+|.+....++
T Consensus 148 ----------------------~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~~Gg~V~~~~~~~H------------ 191 (918)
T PLN02889 148 ----------------------ADIGICLRLLLEC--RDIPILGVCLGHQALGYVHGARIVHAPEPVH------------ 191 (918)
T ss_pred ----------------------HHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHhcCceEEeCCCcee------------
Confidence 01 1122344332 4799999999999999999999987643222
Q ss_pred cccCCCCCceEEEEEecCCcccccccccccccceEEEEecccccchh--ccCCCeEEEEEeCC-----------------
Q 014368 166 IDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFAPD----------------- 226 (426)
Q Consensus 166 ~~~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~--~Lp~g~~vlA~s~d----------------- 226 (426)
|....|.. .++.+|..++... ...|.|..||+..|+ .||.+++++||+.+
T Consensus 192 -------G~~s~I~h-~~~~lF~glp~~~---~~~f~v~RYHSL~v~~~~lP~~L~~~A~t~~~~~~~~~~~~~~~~~~~ 260 (918)
T PLN02889 192 -------GRLSEIEH-NGCRLFDDIPSGR---NSGFKVVRYHSLVIDAESLPKELVPIAWTSSSDTLSFLESQKSGLVPD 260 (918)
T ss_pred -------eeeeeEee-cCchhhcCCCcCC---CCCceEEeCCCcccccCCCCCceEEEEEECCCcccccccccccccccc
Confidence 22444544 3566777775410 014889999999985 59999999999855
Q ss_pred ------------------------------------CeEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcH
Q 014368 227 ------------------------------------GLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCP 270 (426)
Q Consensus 227 ------------------------------------G~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~ 270 (426)
+.|+|++|++ .|+||||||||...++.+ .
T Consensus 261 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~-------~P~~GVQfHPESi~t~~G--------~ 325 (918)
T PLN02889 261 AYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHST-------RPHYGLQFHPESIATCYG--------R 325 (918)
T ss_pred cccccccccccccccccccccccccccccccccCCCCeeEEEEECC-------CceEEEEeCCccccCchh--------H
Confidence 6899999997 899999999999998766 5
Q ss_pred HHHHHHHHHHHHHHHhc
Q 014368 271 SAYQEFVKAVIAYQKKL 287 (426)
Q Consensus 271 ~lf~~Fv~av~~~~~~~ 287 (426)
.||+||+++|..|.++.
T Consensus 326 ~l~~nF~~~~~~~~~~~ 342 (918)
T PLN02889 326 QIFKNFREITQDYWLRL 342 (918)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999999886543
No 44
>PRK05665 amidotransferase; Provisional
Probab=99.93 E-value=5.7e-25 Score=212.68 Aligned_cols=183 Identities=17% Similarity=0.181 Sum_probs=128.6
Q ss_pred EEEEEccCcCC---cccccccchhHHHHHHHHCCCE--EEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCC
Q 014368 12 RVLIVSRRSVR---KNKFVDFVGEYHLDLIVGYGAV--PAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSN 86 (426)
Q Consensus 12 ~igI~~~~~~~---~~~~~~~v~~~yl~~l~~~Ga~--~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~ 86 (426)
+|+|+...+.. ..++-+| +..+.+++...+.. ..++... ..+++..++.+||||++||+. +.|++.
T Consensus 4 ki~IL~~~~~~~~~~~~~g~~-~~~~~~ll~~~~~~~~~~~~~~~--~~~~p~~~~~~dgiiitGs~~---~v~~~~--- 74 (240)
T PRK05665 4 RICILETDVLRPELVAQYQGY-GRMFEQLFARQPIAAEFVVYNVV--QGDYPADDEKFDAYLVTGSKA---DSFGTD--- 74 (240)
T ss_pred EEEEEECCCCCHHHHHHhCCH-HHHHHHHHHhCCCCceEEEEecc--CCCCCCCcccCCEEEECCCCC---Cccccc---
Confidence 38888544331 1122222 23345566666642 2222211 122333456899999999973 335433
Q ss_pred CChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeec
Q 014368 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHI 166 (426)
Q Consensus 87 ~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~ 166 (426)
+||+++ ..+++.+.++++|+||||+|||+|+.++||+|.+... |
T Consensus 75 ------pwi~~l---------------~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~---G------------ 118 (240)
T PRK05665 75 ------PWIQTL---------------KTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQ---G------------ 118 (240)
T ss_pred ------hHHHHH---------------HHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCC---C------------
Confidence 476543 5788889999999999999999999999999987632 1
Q ss_pred ccCCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcE
Q 014368 167 DYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFI 246 (426)
Q Consensus 167 ~~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i 246 (426)
+..+.+.+.+.+..+++...+. .+.+..+|++.|..||++++++|.++++.+++++.. .++
T Consensus 119 ----~e~G~~~~~~~~~~~~~~~~~~-------~~~~~~~H~D~V~~LP~ga~~La~s~~~~~q~~~~~--------~~~ 179 (240)
T PRK05665 119 ----WGVGIHRYQLAAHAPWMSPAVT-------ELTLLISHQDQVTALPEGATVIASSDFCPFAAYHIG--------DQV 179 (240)
T ss_pred ----cccceEEEEecCCCccccCCCC-------ceEEEEEcCCeeeeCCCCcEEEEeCCCCcEEEEEeC--------CCE
Confidence 0123566777766666665554 678889999999999999999999999999999986 579
Q ss_pred EEEcccCCccCC
Q 014368 247 MGLQFHPERMRR 258 (426)
Q Consensus 247 ~GvQFHPE~~~~ 258 (426)
||+|||||.+..
T Consensus 180 ~g~QfHPE~~~~ 191 (240)
T PRK05665 180 LCFQGHPEFVHD 191 (240)
T ss_pred EEEecCCcCcHH
Confidence 999999998754
No 45
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.93 E-value=9.3e-25 Score=211.43 Aligned_cols=188 Identities=19% Similarity=0.211 Sum_probs=127.7
Q ss_pred CCcEEEEEccCcCCcccccccchhHHHHHHHHCCCE---EEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCC
Q 014368 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAV---PAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETS 85 (426)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~---~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~ 85 (426)
|+| |+|+...+.. . .-...|.+++...|.. ..++..... +.....++.+|||||+||+. +.|+...
T Consensus 1 m~~-ililq~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dgvIi~Gg~~---~~~d~~~- 69 (242)
T PRK07567 1 MKP-FLLLSPRPED--E---AADAEYAAFLRYTGLDPAELRRIRLDRE-PLPDLDLDDYSGVIVGGSPF---NVSDPAE- 69 (242)
T ss_pred CCc-EEEEecCCCc--c---cccchHHHHHHhcCCCccceEEEecccC-CCCCCCHhhccEEEEcCCCC---cCCCCCC-
Confidence 456 6776544331 1 1125678888888865 334333222 11121356799999999973 2233210
Q ss_pred CCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceee
Q 014368 86 NLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVH 165 (426)
Q Consensus 86 ~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H 165 (426)
++.+|+.++ ......+++.+.+.++||||||+|||+|+.++||+|.+....++
T Consensus 70 ----~~~pw~~~~-----------~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~~~g~e~------------ 122 (242)
T PRK07567 70 ----SKSPWQRRV-----------EAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDRTYGEPV------------ 122 (242)
T ss_pred ----ccchHHHHH-----------HHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEecCCCCcC------------
Confidence 112455432 12234577788899999999999999999999999876321222
Q ss_pred cccCCCCCceEEEEEecC---CcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCC
Q 014368 166 IDYDNYDGHRHVVKVVKD---TPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAE 242 (426)
Q Consensus 166 ~~~~~~~g~~~~V~v~~~---s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~ 242 (426)
++++|.+++. ++++..++. .+.+..+|++.|..||++++++|+++++.|+|++++
T Consensus 123 --------G~~~v~l~~~g~~~~l~~~~~~-------~~~~~~~H~d~V~~lp~~~~vlA~s~~~~vqa~~~~------- 180 (242)
T PRK07567 123 --------GAVTVSLTDAGRADPLLAGLPD-------TFTAFVGHKEAVSALPPGAVLLATSPTCPVQMFRVG------- 180 (242)
T ss_pred --------ccEEEEECCccCCChhhcCCCC-------ceEEEeehhhhhhhCCCCCEEEEeCCCCCEEEEEeC-------
Confidence 3677777653 346655554 578889999999999999999999999999999986
Q ss_pred CCcEEEEcccCCccC
Q 014368 243 GKFIMGLQFHPERMR 257 (426)
Q Consensus 243 ~~~i~GvQFHPE~~~ 257 (426)
.+++|+|||||.+.
T Consensus 181 -~~~~gvQfHPE~~~ 194 (242)
T PRK07567 181 -ENVYATQFHPELDA 194 (242)
T ss_pred -CCEEEEEeCCcCCH
Confidence 46999999999864
No 46
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.92 E-value=1.7e-24 Score=232.50 Aligned_cols=197 Identities=23% Similarity=0.387 Sum_probs=152.0
Q ss_pred hhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhh
Q 014368 31 GEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKD 110 (426)
Q Consensus 31 ~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd 110 (426)
....||++.++||.+.++||+.+.+. +.+|||+|++||+ ||+.+..
T Consensus 183 K~N~IRcL~~RGa~vtVvPw~~~i~~-----~~yDGlflSNGPG-dPe~~~~---------------------------- 228 (1435)
T KOG0370|consen 183 KYNQIRCLVKRGAEVTVVPWDYPIAK-----EEYDGLFLSNGPG-DPELCPL---------------------------- 228 (1435)
T ss_pred hHHHHHHHHHhCceEEEecCCccccc-----cccceEEEeCCCC-CchhhHH----------------------------
Confidence 34579999999999999999987665 2699999999997 6765432
Q ss_pred HHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEecCCcccccc
Q 014368 111 SIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWF 190 (426)
Q Consensus 111 ~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~ 190 (426)
...-++..++.++|++|||+|||+|+.|.|++.++. .+|++ |+++|+....+
T Consensus 229 --~v~~vr~lL~~~~PvfGIClGHQllA~AaGakT~Km---KyGNR----------------GhNiP~~~~~t------- 280 (1435)
T KOG0370|consen 229 --LVQNVRELLESNVPVFGICLGHQLLALAAGAKTYKM---KYGNR----------------GHNIPCTCRAT------- 280 (1435)
T ss_pred --HHHHHHHHHhCCCCeEEEehhhHHHHHhhCCceEEe---ecccc----------------CCCccceeccC-------
Confidence 134556667778999999999999999999999987 56643 33555543322
Q ss_pred cccccccceEEEEecccccchh--ccCCCeEEEEEe-CCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCC
Q 014368 191 KDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFA-PDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYP 267 (426)
Q Consensus 191 ~~~~~~~~~~~~Vns~H~~~V~--~Lp~g~~vlA~s-~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~ 267 (426)
++ ++...++|+++|+ .||.+|+++..+ +||..|+|.|.. .|++.+|||||.+.+|.+.
T Consensus 281 Gr-------c~ITSQNHGYAVD~~tLp~gWk~lFvN~NDgSNEGI~Hss-------~P~fSvQFHPEat~GP~DT----- 341 (1435)
T KOG0370|consen 281 GR-------CFITSQNHGYAVDPATLPAGWKPLFVNANDGSNEGIMHSS-------KPFFSVQFHPEATPGPHDT----- 341 (1435)
T ss_pred ce-------EEEEecCCceeeccccccCCCchheeecccCCCceEecCC-------CCceeeecCCcCCCCCcch-----
Confidence 22 6667789999996 489999999998 899999999986 8999999999999999874
Q ss_pred CcHHHHHHHHHHHHHHHHhcccccCCCCCCcchhhhhcccceee
Q 014368 268 GCPSAYQEFVKAVIAYQKKLNIATAVPKPLNLNKEMENKRRTIV 311 (426)
Q Consensus 268 ~~~~lf~~Fv~av~~~~~~~~~~~~~~~~~~~~~~~~~~rk~l~ 311 (426)
..+|+.|++.+..++........+.+..+.... ++.||||+
T Consensus 342 --eyLFDiFi~lvkk~kst~tAs~~~t~~~~~~~~-~~~~kVlv 382 (1435)
T KOG0370|consen 342 --EYLFDVFIELVKKSKSTPTASAFITEPAKAAPR-VEVKKVLV 382 (1435)
T ss_pred --HHHHHHHHHHHHHHhcCCccccccccccccccc-ccccEEEE
Confidence 789999999999888777665555444444333 33444443
No 47
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.92 E-value=1.1e-23 Score=203.60 Aligned_cols=177 Identities=25% Similarity=0.246 Sum_probs=125.8
Q ss_pred CCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCC
Q 014368 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLS 88 (426)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~ 88 (426)
.+++|+|+-.... .+ ...+.+++...|..+.++....+. .+++.++.+|||||+||+. +.|++.
T Consensus 6 ~~~~vlvi~h~~~------~~-~g~l~~~l~~~g~~~~v~~~~~~~-~~p~~l~~~dgvii~Ggp~---~~~d~~----- 69 (239)
T PRK06490 6 DKRPVLIVLHQER------ST-PGRVGQLLQERGYPLDIRRPRLGD-PLPDTLEDHAGAVIFGGPM---SANDPD----- 69 (239)
T ss_pred CCceEEEEecCCC------CC-ChHHHHHHHHCCCceEEEeccCCC-CCCCcccccCEEEEECCCC---CCCCCc-----
Confidence 4567788765432 11 223466788899988877543221 2344467899999999973 223322
Q ss_pred hhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeeccc
Q 014368 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDY 168 (426)
Q Consensus 89 ~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~ 168 (426)
+|+.+ +..+++.+++.++|+||||+|||+|+.++||+|.+...+. .+
T Consensus 70 ----~wi~~---------------~~~~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~G~-----------~e--- 116 (239)
T PRK06490 70 ----DFIRR---------------EIDWISVPLKENKPFLGICLGAQMLARHLGARVAPHPDGR-----------VE--- 116 (239)
T ss_pred ----hHHHH---------------HHHHHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCCCCC-----------Cc---
Confidence 24421 4578899999999999999999999999999998753210 01
Q ss_pred CCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEE
Q 014368 169 DNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMG 248 (426)
Q Consensus 169 ~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~G 248 (426)
.++++|.+++.++++..++ ..+..+|++. ..||++++++|+++++.+++|+++ .++||
T Consensus 117 ----~G~~~i~~~~~~~~~~~~~---------~~~~~~H~d~-~~lP~~~~~LA~s~~~~~qa~~~~--------~~v~g 174 (239)
T PRK06490 117 ----IGYYPLRPTEAGRALMHWP---------EMVYHWHREG-FDLPAGAELLATGDDFPNQAFRYG--------DNAWG 174 (239)
T ss_pred ----cceEEeEECCCcccccCCC---------CEEEEECCcc-ccCCCCCEEEEeCCCCCeEEEEeC--------CCEEE
Confidence 2467888876655443222 2366789998 569999999999999999999986 46999
Q ss_pred EcccCCcc
Q 014368 249 LQFHPERM 256 (426)
Q Consensus 249 vQFHPE~~ 256 (426)
+|||||.+
T Consensus 175 ~QfHPE~~ 182 (239)
T PRK06490 175 LQFHPEVT 182 (239)
T ss_pred EeeCccCC
Confidence 99999976
No 48
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.91 E-value=8.7e-24 Score=232.47 Aligned_cols=199 Identities=17% Similarity=0.174 Sum_probs=138.2
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
+.+|+|+++.+++++++++++ +.+...++.+++++++....++...+..+|||||+|||+ +|.. .
T Consensus 5 ~~~iL~ID~~DSft~nl~~~l-----~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG-~p~~--~------- 69 (742)
T TIGR01823 5 RLHVLFIDSYDSFTYNVVRLL-----EQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPG-NPNN--A------- 69 (742)
T ss_pred CceEEEEeCCcchHHHHHHHH-----HHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCC-Cccc--h-------
Confidence 468999999999888877663 222222466678887654343433456799999999986 3421 0
Q ss_pred hHHHHHHhhcCCCccccchhhHHHHHHHHHHHHc----CCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceee
Q 014368 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLER----NIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVH 165 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~----~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H 165 (426)
.+..+++.+++. ++||||||+|||+|+.++||++.+....+.
T Consensus 70 ----------------------~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~~~~h------------ 115 (742)
T TIGR01823 70 ----------------------QDMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPTPKH------------ 115 (742)
T ss_pred ----------------------hhhHHHHHHHHhcccCCCcEEEEchhhHHHHhhcCCEEEECCCCCc------------
Confidence 012344555543 599999999999999999999876542222
Q ss_pred cccCCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhc-cCCC--eEEEEEeCC-CeEEEEEeCCCCCCC
Q 014368 166 IDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKR-LAQR--FVPMAFAPD-GLIEGFYDPDAYNPA 241 (426)
Q Consensus 166 ~~~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~-Lp~g--~~vlA~s~d-G~Veaie~~~~~~~~ 241 (426)
|..+.|... +..++..++ .+.++.+|++.+.. .++. +.+++.+++ +.|+|+++++
T Consensus 116 -------G~~~~v~~~-~~~lf~gl~--------~~~v~~~Hs~~v~~~~~~~l~~~~~a~~~~~~~i~ai~h~~----- 174 (742)
T TIGR01823 116 -------GQVYEMHTN-DAAIFCGLF--------SVKSTRYHSLYANPEGIDTLLPLCLTEDEEGIILMSAQTKK----- 174 (742)
T ss_pred -------CeEEEEEEC-CccccCCCC--------CCceeEEEEEEccCCCCCcceEEEEEEcCCCCeEEEEEEcC-----
Confidence 224555543 344555443 25788999998854 3444 455666654 4899999997
Q ss_pred CCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHhc
Q 014368 242 EGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQKKL 287 (426)
Q Consensus 242 ~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~~~~~~ 287 (426)
.|+||||||||+..++.+ ..+||++|++++..++++.
T Consensus 175 --~pi~GVQFHPE~~~s~~g-------~~~Lf~nFl~~~~~~~~~~ 211 (742)
T TIGR01823 175 --KPWFGVQYHPESCCSELG-------SGKLVSNFLKLAFINNVKT 211 (742)
T ss_pred --CceEEEEeCcccCCCCcc-------HHHHHHHHHHHHHHhhhhc
Confidence 889999999999877654 2699999999999887544
No 49
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.91 E-value=8.8e-24 Score=216.79 Aligned_cols=156 Identities=25% Similarity=0.345 Sum_probs=125.9
Q ss_pred HHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccc--cc-hhhhcccCCCCcceeecccCC---------CCCceEEEEEe
Q 014368 114 LRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQ--DI-EKEVSRKCPENQRVVHIDYDN---------YDGHRHVVKVV 181 (426)
Q Consensus 114 ~~lir~ale~~iPILGIClG~QlLava~GG~l~~--~~-~~e~g~~~~~~~~v~H~~~~~---------~~g~~~~V~v~ 181 (426)
+..+++|+++++|+||||+|||+..+++..++.. +. +.|+++ .+..++..+...+ ...+.+++.+.
T Consensus 362 I~Ai~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp--~t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~ 439 (533)
T COG0504 362 IAAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDP--DTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLK 439 (533)
T ss_pred HHHHHHHHhcCCCEEEEchhHHHHHHHHHHHhcCCccCcccccCC--CCCCceEEeccccccCCcCCceeeccceeeecC
Confidence 6789999999999999999999999999877643 22 245543 2455666654432 22367889999
Q ss_pred cCCccccccccccccc--ceEEEEecccccchhccCCCeEEEEEeCCC-eEEEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 014368 182 KDTPLHDWFKDSLEEE--KMEIWVNSYHHQGVKRLAQRFVPMAFAPDG-LIEGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (426)
Q Consensus 182 ~~s~L~~~~~~~~~~~--~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG-~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (426)
++|.++++|+...+.+ +|+|.||......+.+ .|+++.++++|| .+|++|.++ |+||+|+|||||+.+.
T Consensus 440 ~gT~a~~lY~~~~v~ERHRHRYEvN~~y~~~le~--~Gl~~sg~s~d~~lvEivE~~~------hpfFv~~QfHPEf~Sr 511 (533)
T COG0504 440 PGTLAAKLYGKDEIYERHRHRYEVNNDYRDQLEK--AGLVFSGTSPDGGLVEIVELPD------HPFFVATQFHPEFKSR 511 (533)
T ss_pred CCcHHHHHhCCCeeeeeccchhhcCHHHHHHHHh--CCeEEEEEcCCCCeEEEEEcCC------CceEEEEcccccccCC
Confidence 9999999998766555 4788888776666665 789999999886 999999997 7999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHh
Q 014368 259 PDSDEFDYPGCPSAYQEFVKAVIAYQKK 286 (426)
Q Consensus 259 ~~~~~~d~~~~~~lf~~Fv~av~~~~~~ 286 (426)
|..+ +++|..|++|+..++++
T Consensus 512 P~~p-------hPlf~~fv~Aa~~~~~~ 532 (533)
T COG0504 512 PLRP-------HPLFVGFVKAALEYKKD 532 (533)
T ss_pred CCCC-------CccHHHHHHHHHHhhcc
Confidence 9987 59999999999987653
No 50
>PLN02327 CTP synthase
Probab=99.91 E-value=2.5e-23 Score=218.94 Aligned_cols=173 Identities=21% Similarity=0.302 Sum_probs=124.6
Q ss_pred hhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHH
Q 014368 59 DSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLN 138 (426)
Q Consensus 59 ~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLa 138 (426)
+.+..+||||+|||++ ++.. ...+..+++++++++|+||||+|||+++
T Consensus 358 ~~L~~~DGIvvpGGfG-~~~~-------------------------------~G~i~ai~~are~~iP~LGIClGmQl~v 405 (557)
T PLN02327 358 KLLKGADGILVPGGFG-DRGV-------------------------------EGKILAAKYARENKVPYLGICLGMQIAV 405 (557)
T ss_pred HhhccCCEEEeCCCCC-Cccc-------------------------------ccHHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence 5678899999999963 1111 0124578899999999999999999999
Q ss_pred HHhCCcccc--cc-hhhhcccCCCCcceeeccc-CC---CC----CceEEEEEe-cCCcccccccccccccceEEEEecc
Q 014368 139 VACGGTLYQ--DI-EKEVSRKCPENQRVVHIDY-DN---YD----GHRHVVKVV-KDTPLHDWFKDSLEEEKMEIWVNSY 206 (426)
Q Consensus 139 va~GG~l~~--~~-~~e~g~~~~~~~~v~H~~~-~~---~~----g~~~~V~v~-~~s~L~~~~~~~~~~~~~~~~Vns~ 206 (426)
+++|+++.. +. +.|+.+. +..++....+ .. .. .+.+++.+. ++|.++++|+.. ..|++.
T Consensus 406 iefaRnvlG~~dAnS~Efdp~--t~~pvI~~m~e~~~~~~GGtMRLG~~~~~~~~~~S~l~~iYg~~-------~~Vner 476 (557)
T PLN02327 406 IEFARSVLGLKDANSTEFDPE--TPNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPDCKSAKLYGNV-------SFVDER 476 (557)
T ss_pred HHHHHhhcCCcCCCccccCCC--CCCCEEEEehhcccccCCceEECCCcccccCCCCCHHHHHhCCc-------cceeee
Confidence 999998753 33 3566432 2334433221 11 11 134455665 889999999863 236666
Q ss_pred cc-------cchhcc-CCCeEEEEEeCCC-eEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHH
Q 014368 207 HH-------QGVKRL-AQRFVPMAFAPDG-LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFV 277 (426)
Q Consensus 207 H~-------~~V~~L-p~g~~vlA~s~dG-~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv 277 (426)
|+ +.++.+ ..+++++|+++|| .||++|+++ ++|++|+|||||+.+.+..+ .+||..|+
T Consensus 477 HrHRYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~------~pffvGVQfHPE~~s~p~~~-------~pLF~~Fv 543 (557)
T PLN02327 477 HRHRYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPS------HPFFVGVQFHPEFKSRPGKP-------SPLFLGLI 543 (557)
T ss_pred eccccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCC------CCEEEEEEcCCCCCCCCCCc-------hHHHHHHH
Confidence 65 555556 5899999999887 899999987 57788999999999887654 69999999
Q ss_pred HHHHHHHH
Q 014368 278 KAVIAYQK 285 (426)
Q Consensus 278 ~av~~~~~ 285 (426)
++|..+.+
T Consensus 544 ~Aa~~~~~ 551 (557)
T PLN02327 544 AAASGQLD 551 (557)
T ss_pred HHHHHhHH
Confidence 99976544
No 51
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.90 E-value=6.4e-23 Score=191.58 Aligned_cols=188 Identities=17% Similarity=0.199 Sum_probs=122.6
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
+++|+|+...... .++++++...|+.+++++. .+. ++.+|||||+||++ +.++..
T Consensus 1 ~m~~~i~~~~g~~---------~~~~~~l~~~g~~~~~~~~---~~~----l~~~dgiii~GG~~---~~~~~~------ 55 (189)
T PRK13525 1 MMKIGVLALQGAV---------REHLAALEALGAEAVEVRR---PED----LDEIDGLILPGGES---TTMGKL------ 55 (189)
T ss_pred CCEEEEEEcccCH---------HHHHHHHHHCCCEEEEeCC---hhH----hccCCEEEECCCCh---HHHHHH------
Confidence 3578888765331 2346778999999999874 222 45799999999963 111110
Q ss_pred hHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccC
Q 014368 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (426)
.| +....++++.+.++++|+||||+|+|+|+.++||.... .+|- . ...+.. +
T Consensus 56 ---~~---------------~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~~~~----~lg~-~--~~~v~~---~ 107 (189)
T PRK13525 56 ---LR---------------DFGLLEPLREFIASGLPVFGTCAGMILLAKEIEGYEQE----HLGL-L--DITVRR---N 107 (189)
T ss_pred ---HH---------------hccHHHHHHHHHHCCCeEEEECHHHHHHHhhcccCCCC----ceee-E--EEEEEE---c
Confidence 00 01124678888899999999999999999999885111 1110 0 000000 0
Q ss_pred CCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEE
Q 014368 170 NYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGL 249 (426)
Q Consensus 170 ~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~Gv 249 (426)
.+ ++. +.....+.++..+++ .+.++.+|++.|..+|++++++|.++ +.+++++. .++||+
T Consensus 108 ~~--g~~-~g~~~~~~~~~~~~~-------~~~~~~~H~d~v~~lp~~~~vlA~~~-~~~~~~~~---------~~~~g~ 167 (189)
T PRK13525 108 AF--GRQ-VDSFEAELDIKGLGE-------PFPAVFIRAPYIEEVGPGVEVLATVG-GRIVAVRQ---------GNILAT 167 (189)
T ss_pred cC--CCc-eeeEEecccccCCCC-------CeEEEEEeCceeeccCCCcEEEEEcC-CEEEEEEe---------CCEEEE
Confidence 00 000 111112333433333 57888999999999999999999986 45667764 469999
Q ss_pred cccCCccCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014368 250 QFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 250 QFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
|||||.+.. .+||++|++.|.
T Consensus 168 QfHPE~~~~-----------~~~~~~f~~~~~ 188 (189)
T PRK13525 168 SFHPELTDD-----------TRVHRYFLEMVK 188 (189)
T ss_pred EeCCccCCC-----------chHHHHHHHHhh
Confidence 999998753 389999999886
No 52
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.89 E-value=1.3e-22 Score=195.69 Aligned_cols=166 Identities=19% Similarity=0.233 Sum_probs=121.5
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCc-ccccCCCCChhHHHHHHhhcCCCccccchhh
Q 014368 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSL-YEAETSNLSPEELEEIRRLHTSDTAIDKEKD 110 (426)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~-y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd 110 (426)
..|.+++..+|..+.++....+ +.+...++.+||||++||+. ++.. +++.+ |+ +.
T Consensus 15 g~~~~~~~~~g~~~~~~~~~~g-~~~p~~~~~~d~vii~GGp~-~~~~~~~~~p---------~~----------~~--- 70 (235)
T PRK08250 15 GAYLKWAENRGYDISYSRVYAG-EALPENADGFDLLIVMGGPQ-SPRTTREECP---------YF----------DS--- 70 (235)
T ss_pred hHHHHHHHHCCCeEEEEEccCC-CCCCCCccccCEEEECCCCC-Chhhcccccc---------cc----------ch---
Confidence 3456778889988776654333 23443456799999999973 1211 11111 21 00
Q ss_pred HHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEecC---Cccc
Q 014368 111 SIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKD---TPLH 187 (426)
Q Consensus 111 ~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~---s~L~ 187 (426)
..+.++++.+++.++|+||||+|+|+|+.++||+|.+....++ ++++|.+++. .+++
T Consensus 71 ~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~--------------------G~~~v~lt~~g~~d~l~ 130 (235)
T PRK08250 71 KAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSPEKEI--------------------GYFPITLTEAGLKDPLL 130 (235)
T ss_pred HHHHHHHHHHHHcCCCEEEEChhHHHHHHHhCceeccCCCCce--------------------eEEEEEEccccccCchh
Confidence 1246788999999999999999999999999999987643333 3677877654 3466
Q ss_pred ccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcccCCccC
Q 014368 188 DWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMR 257 (426)
Q Consensus 188 ~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~ 257 (426)
..+++ .+.+..+|++.+ .||++++++|+++++.++++... .++||+|||||.+.
T Consensus 131 ~~~~~-------~~~v~~~H~d~~-~lP~~a~~LA~s~~~~~qa~~~~--------~~~~g~QfHPE~~~ 184 (235)
T PRK08250 131 SHFGS-------TLTVGHWHNDMP-GLTDQAKVLATSEGCPRQIVQYS--------NLVYGFQCHMEFTV 184 (235)
T ss_pred hcCCC-------CcEEEEEeccee-cCCCCCEEEECCCCCCceEEEeC--------CCEEEEeecCcCCH
Confidence 66665 567889999976 59999999999999999999986 46999999999754
No 53
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.89 E-value=2.2e-22 Score=193.94 Aligned_cols=178 Identities=19% Similarity=0.229 Sum_probs=125.2
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
|.+|+|+-.-.. .+ ...+.+++...|..+.+++...+.. ....+..+||||++||+. +.|++...
T Consensus 2 m~~ilviqh~~~-e~------~g~i~~~L~~~g~~~~v~~~~~~~~-~~~~~~~~d~lii~Ggp~---~~~d~~~~---- 66 (234)
T PRK07053 2 MKTAVAIRHVAF-ED------LGSFEQVLGARGYRVRYVDVGVDDL-ETLDALEPDLLVVLGGPI---GVYDDELY---- 66 (234)
T ss_pred CceEEEEECCCC-CC------ChHHHHHHHHCCCeEEEEecCCCcc-CCCCccCCCEEEECCCCC---CCCCCCcC----
Confidence 456777654321 11 1225677889999888887543311 122345799999999972 33443221
Q ss_pred hHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccC
Q 014368 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (426)
.|++ -+..+++.+++.++|+||||+|||+|+.++||+|.+....|+
T Consensus 67 ---p~~~---------------~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~---------------- 112 (234)
T PRK07053 67 ---PFLA---------------PEIALLRQRLAAGLPTLGICLGAQLIARALGARVYPGGQKEI---------------- 112 (234)
T ss_pred ---CcHH---------------HHHHHHHHHHHCCCCEEEECccHHHHHHHcCCcEecCCCCeE----------------
Confidence 1232 246788999999999999999999999999999987432333
Q ss_pred CCCCceEEEEEecC---CcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcE
Q 014368 170 NYDGHRHVVKVVKD---TPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFI 246 (426)
Q Consensus 170 ~~~g~~~~V~v~~~---s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i 246 (426)
++.+|.+++. .++.. ++. .+.+..+|++.+ .||++.+++|+++++.+++|+.. .++
T Consensus 113 ----G~~~i~~t~~g~~~pl~~-~~~-------~~~~~~~H~d~~-~lP~ga~~La~s~~~~~qaf~~g--------~~~ 171 (234)
T PRK07053 113 ----GWAPLTLTDAGRASPLRH-LGA-------GTPVLHWHGDTF-DLPEGATLLASTPACRHQAFAWG--------NHV 171 (234)
T ss_pred ----eEEEEEEeccccCChhhc-CCC-------cceEEEEeCCEE-ecCCCCEEEEcCCCCCeeEEEeC--------CCE
Confidence 3677777653 23332 332 467778999998 59999999999999999999985 579
Q ss_pred EEEcccCCccC
Q 014368 247 MGLQFHPERMR 257 (426)
Q Consensus 247 ~GvQFHPE~~~ 257 (426)
||+|||||.+.
T Consensus 172 ~g~QfHpE~~~ 182 (234)
T PRK07053 172 LALQFHPEARE 182 (234)
T ss_pred EEEeeCccCCH
Confidence 99999999764
No 54
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.88 E-value=2.8e-22 Score=186.45 Aligned_cols=195 Identities=21% Similarity=0.286 Sum_probs=127.3
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChh
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e 90 (426)
++|+|++-..- ++ .+..+++++.|+.+++.. +++.+ +..|+|||||-+.....
T Consensus 2 ~~i~IIDyg~G---NL-----~Sv~~Aler~G~~~~vs~---d~~~i----~~AD~liLPGVGaf~~a------------ 54 (204)
T COG0118 2 MMVAIIDYGSG---NL-----RSVKKALERLGAEVVVSR---DPEEI----LKADKLILPGVGAFGAA------------ 54 (204)
T ss_pred CEEEEEEcCcc---hH-----HHHHHHHHHcCCeeEEec---CHHHH----hhCCEEEecCCCCHHHH------------
Confidence 56777764321 11 234678999999998865 55554 46899999996532211
Q ss_pred HHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHh---CCc-ccccchhhhcccCCCC-cceee
Q 014368 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC---GGT-LYQDIEKEVSRKCPEN-QRVVH 165 (426)
Q Consensus 91 ~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~---GG~-l~~~~~~e~g~~~~~~-~~v~H 165 (426)
++.+++ ....+.++.+.+.++|+||||+|||+|.... +++ -..-+.+..- +++.. .+++|
T Consensus 55 -m~~L~~-------------~gl~~~i~~~~~~~kP~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V~-r~~~~~~kvPH 119 (204)
T COG0118 55 -MANLRE-------------RGLIEAIKEAVESGKPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVV-RFPAEDLKVPH 119 (204)
T ss_pred -HHHHHh-------------cchHHHHHHHHhcCCCEEEEeHhHHhhhhcccccCCCCCcceecceEE-EcCCCCCCCCc
Confidence 112221 1235677777778899999999999998744 221 0000111110 22222 68999
Q ss_pred cccCCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCC--eEEEEEeCCCCCCCCC
Q 014368 166 IDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDG--LIEGFYDPDAYNPAEG 243 (426)
Q Consensus 166 ~~~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG--~Veaie~~~~~~~~~~ 243 (426)
|+|+. |.+.++++|++.+++ +...|+|+||+-... ..-.++++++.| +..+|..
T Consensus 120 MGWN~-------l~~~~~~~l~~gi~~----~~~~YFVHSY~~~~~----~~~~v~~~~~YG~~f~AaV~k--------- 175 (204)
T COG0118 120 MGWNQ-------VEFVRGHPLFKGIPD----GAYFYFVHSYYVPPG----NPETVVATTDYGEPFPAAVAK--------- 175 (204)
T ss_pred cccce-------eeccCCChhhcCCCC----CCEEEEEEEEeecCC----CCceEEEeccCCCeeEEEEEe---------
Confidence 98764 555578899988765 135789988876542 334567778777 6666665
Q ss_pred CcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHH
Q 014368 244 KFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAV 280 (426)
Q Consensus 244 ~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av 280 (426)
.+++|+|||||++... + .++++||++.+
T Consensus 176 ~N~~g~QFHPEKSg~~-G--------l~lL~NFl~~~ 203 (204)
T COG0118 176 DNVFGTQFHPEKSGKA-G--------LKLLKNFLEWI 203 (204)
T ss_pred CCEEEEecCcccchHH-H--------HHHHHHHHhhc
Confidence 4699999999999874 3 58999999864
No 55
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.88 E-value=6.4e-22 Score=187.62 Aligned_cols=190 Identities=18% Similarity=0.196 Sum_probs=126.8
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCC--EEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA--VPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga--~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
+|+|++...- .+ .++.+++.+.|+ .+.++. ++++ ++.+|||||||++.. .+
T Consensus 3 ~~~iid~g~g-------n~-~s~~~al~~~g~~~~v~~~~---~~~~----l~~~d~lIlpG~~~~-----~~------- 55 (209)
T PRK13146 3 TVAIIDYGSG-------NL-RSAAKALERAGAGADVVVTA---DPDA----VAAADRVVLPGVGAF-----AD------- 55 (209)
T ss_pred eEEEEECCCC-------hH-HHHHHHHHHcCCCccEEEEC---CHHH----hcCCCEEEECCCCcH-----HH-------
Confidence 6778775532 12 456788999998 444443 4444 367999999997531 11
Q ss_pred hHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH------------hCCcccccchhhhcccC
Q 014368 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA------------CGGTLYQDIEKEVSRKC 157 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava------------~GG~l~~~~~~e~g~~~ 157 (426)
.+.+++.. .....+++.+.+.++|+||||+|||+|+.+ ++|++.+..+ .+
T Consensus 56 -~~~~l~~~------------~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~--~~--- 117 (209)
T PRK13146 56 -CMRGLRAV------------GLGEAVIEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQP--DG--- 117 (209)
T ss_pred -HHHHHHHC------------CcHHHHHHHHHhCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcCC--CC---
Confidence 11222211 122346666677899999999999999998 4555443210 00
Q ss_pred CCCcceeecccCCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCC-eEEEEEeCC
Q 014368 158 PENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDG-LIEGFYDPD 236 (426)
Q Consensus 158 ~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG-~Veaie~~~ 236 (426)
...+++|++ |+.|.+.+++++++.+++ .+.+..+|++.+..++ ...++|+++++ .++++..+
T Consensus 118 -~~~~~p~~G-------~~~v~~~~~~~lf~~~~~-------~~~v~~~Hs~~v~~~~-~~~~la~s~~~~~~~a~~~~- 180 (209)
T PRK13146 118 -PALKVPHMG-------WNTVDQTRDHPLFAGIPD-------GARFYFVHSYYAQPAN-PADVVAWTDYGGPFTAAVAR- 180 (209)
T ss_pred -CCCccCccC-------hHHeeeCCCChhccCCCC-------CCEEEEEeEEEEEcCC-CCcEEEEEcCCCEEEEEEec-
Confidence 112345554 566777778888888776 4667789999887554 56889998876 57777654
Q ss_pred CCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHH
Q 014368 237 AYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKA 279 (426)
Q Consensus 237 ~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a 279 (426)
.++||+|||||.+. ..+ ..++++|++.
T Consensus 181 -------~~i~GvQFHPE~s~-~~G--------~~ll~nfl~~ 207 (209)
T PRK13146 181 -------DNLFATQFHPEKSQ-DAG--------LALLRNFLAW 207 (209)
T ss_pred -------CCEEEEEcCCcccH-HHH--------HHHHHHHHhh
Confidence 68999999999874 344 5899999875
No 56
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.88 E-value=2e-22 Score=189.99 Aligned_cols=178 Identities=21% Similarity=0.244 Sum_probs=121.1
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhH
Q 014368 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (426)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~ 111 (426)
..+.+.++..|+.+.++.. .++ ++.+||||||||+..++. +.++. .++
T Consensus 13 ~~i~~~l~~~G~~v~~~~~---~~~----l~~~d~iiipG~~~~~~~-------------~~~~~-----------~~~- 60 (205)
T PRK13141 13 RSVEKALERLGAEAVITSD---PEE----ILAADGVILPGVGAFPDA-------------MANLR-----------ERG- 60 (205)
T ss_pred HHHHHHHHHCCCeEEEECC---HHH----hccCCEEEECCCCchHHH-------------HHHHH-----------HcC-
Confidence 3467889999999998753 233 356999999987431110 11110 001
Q ss_pred HHHHHHHHHHHcCCCEEEEehHHHHHHHHh------------CCcccccchhhhcccCCCCcceeecccCCCCCceEEEE
Q 014368 112 IELRLAKLCLERNIPYLGICRGSQVLNVAC------------GGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVK 179 (426)
Q Consensus 112 ~e~~lir~ale~~iPILGIClG~QlLava~------------GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~ 179 (426)
...+++.+.+.++|+||||+|+|+|+.++ ||++.+... + ....++|. +++.+.
T Consensus 61 -~~~~i~~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~~---~----~~~~~~~~-------g~~~i~ 125 (205)
T PRK13141 61 -LDEVIKEAVASGKPLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFPP---E----EGLKVPHM-------GWNQLE 125 (205)
T ss_pred -hHHHHHHHHHCCCcEEEECHHHHHhhhccccCCCCCccceEEEEEEEcCC---C----CCCcccEe-------cCccce
Confidence 24567888889999999999999999974 233332110 0 00112332 467788
Q ss_pred EecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCC-eEEEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 014368 180 VVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDG-LIEGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (426)
Q Consensus 180 v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG-~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (426)
+..++++++.++. .+.+..+|++.+. +++++.++|++++| .++++... .++||||||||...
T Consensus 126 ~~~~~~l~~~l~~-------~~~v~~~Hs~~v~-~~~~~~v~a~~~~~~~~~a~~~~--------~~i~GvQfHPE~~~- 188 (205)
T PRK13141 126 LKKESPLLKGIPD-------GAYVYFVHSYYAD-PCDEEYVAATTDYGVEFPAAVGK--------DNVFGAQFHPEKSG- 188 (205)
T ss_pred eCCCChhhhCCCC-------CCEEEEECeeEec-cCCcCeEEEEEeCCcEEEEEEec--------CCEEEEeCCCccch-
Confidence 8788889988875 3455567887774 67788999998776 78888654 58999999999865
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHH
Q 014368 259 PDSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 259 ~~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
+.+ ..+|++|+++|+
T Consensus 189 ~~g--------~~l~~~fl~~~~ 203 (205)
T PRK13141 189 DVG--------LKILKNFVEMVE 203 (205)
T ss_pred HHH--------HHHHHHHHHHhh
Confidence 233 589999999874
No 57
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.87 E-value=2.6e-21 Score=182.06 Aligned_cols=193 Identities=21% Similarity=0.237 Sum_probs=124.2
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhH
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~ 91 (426)
+|+|+...+. ++ ..+.++++.+|+.+++++. .++ ++.+|||||+||.+ |.+ .
T Consensus 2 ~~~v~~~~~~-------~~-~~~~~~l~~~G~~~~~~~~---~~~----~~~~d~iii~G~~~-----~~~--------~ 53 (200)
T PRK13143 2 MIVIIDYGVG-------NL-RSVSKALERAGAEVVITSD---PEE----ILDADGIVLPGVGA-----FGA--------A 53 (200)
T ss_pred eEEEEECCCc-------cH-HHHHHHHHHCCCeEEEECC---HHH----HccCCEEEECCCCC-----HHH--------H
Confidence 5677765532 22 4578899999999998863 222 35799999998642 111 1
Q ss_pred HHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHh-CCcccccchhhhcccC---CCCcceeecc
Q 014368 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC-GGTLYQDIEKEVSRKC---PENQRVVHID 167 (426)
Q Consensus 92 ~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~-GG~l~~~~~~e~g~~~---~~~~~v~H~~ 167 (426)
++|++ ...+.++.++++++|+||||+|+|+|+.++ +|+..++.. -++... +....+.|
T Consensus 54 ~~~~~---------------~~~~~i~~~~~~~~PilgIC~G~q~l~~~~~~g~~~~~lg-~~~g~v~~~~~~~~~~~-- 115 (200)
T PRK13143 54 MENLS---------------PLRDVILEAARSGKPFLGICLGMQLLFESSEEGGGVRGLG-LFPGRVVRFPAGVKVPH-- 115 (200)
T ss_pred HHHHH---------------HHHHHHHHHHHcCCCEEEECHHHHHHhhhhccCCCCCCcc-eeeEEEEEcCCCCCCCe--
Confidence 23332 134677888999999999999999999864 444444321 111000 00011122
Q ss_pred cCCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCC-eEEEEEeCCCCCCCCCCcE
Q 014368 168 YDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDG-LIEGFYDPDAYNPAEGKFI 246 (426)
Q Consensus 168 ~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG-~Veaie~~~~~~~~~~~~i 246 (426)
.+++.+.+..++++++.++. . .+..+|++.+. +++++.++|+++++ .++++... .++
T Consensus 116 -----~g~~~v~~~~~~~l~~~l~~-------~-~~~~~Hs~~~~-~~~~~~~la~~~~~~~~~~~~~~--------~~~ 173 (200)
T PRK13143 116 -----MGWNTVKVVKDCPLFEGIDG-------E-YVYFVHSYYAY-PDDEDYVVATTDYGIEFPAAVCN--------DNV 173 (200)
T ss_pred -----ecceEEEEcCCChhhccCCC-------c-EEEEEeeeeeC-CCCcceEEEEEcCCCEEEEEEEc--------CCE
Confidence 24677888778888766543 1 23346666664 55678999999886 44555543 589
Q ss_pred EEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014368 247 MGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 247 ~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
||+|||||++. +.+ .+||++|++.+.
T Consensus 174 ~gvQfHPE~~~-~~g--------~~i~~~f~~~~~ 199 (200)
T PRK13143 174 FGTQFHPEKSG-ETG--------LKILENFVELIK 199 (200)
T ss_pred EEEeCCCccch-HHH--------HHHHHHHHHHHh
Confidence 99999999874 222 589999998763
No 58
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.87 E-value=8.6e-22 Score=185.39 Aligned_cols=179 Identities=20% Similarity=0.267 Sum_probs=113.3
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHH
Q 014368 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (426)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~ 112 (426)
+.++++.+.|+.+++++. .+++ +.+|+||||||++.++. +.++++. .+
T Consensus 14 ~v~~~l~~~g~~~~~~~~---~~~l----~~~d~lilPG~g~~~~~-------------~~~l~~~------------~~ 61 (201)
T PRK13152 14 SVAKAFEKIGAINFIAKN---PKDL----QKADKLLLPGVGSFKEA-------------MKNLKEL------------GF 61 (201)
T ss_pred HHHHHHHHCCCeEEEECC---HHHH----cCCCEEEECCCCchHHH-------------HHHHHHc------------Cc
Confidence 346778889998887763 3333 46999999998642211 1122211 12
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHH-hCCcccccchhhhccc---CCC--CcceeecccCCCCCceEEEEEecCCcc
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVA-CGGTLYQDIEKEVSRK---CPE--NQRVVHIDYDNYDGHRHVVKVVKDTPL 186 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava-~GG~l~~~~~~e~g~~---~~~--~~~v~H~~~~~~~g~~~~V~v~~~s~L 186 (426)
+..+.+.+++.++|+||||+|||+|+++ .+|...++.. .++.+ ++. ...++| +++++|++.+++++
T Consensus 62 ~~~l~~~~~~~~~pvlGiC~G~Q~l~~~~~~~~~~~~lg-~~~g~v~~~~~~~~~~~~~-------~g~~~v~~~~~~~l 133 (201)
T PRK13152 62 IEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLG-FIEGEVVKFEEDLNLKIPH-------MGWNELEILKQSPL 133 (201)
T ss_pred HHHHHHHHHhCCCcEEEECHhHHHHhhcccccCCcCCcc-cccEEEEECCCCCCCcCCc-------cCeEEEEECCCChh
Confidence 3456666778899999999999999997 2333344331 11100 000 112334 45889999889999
Q ss_pred cccccccccccceEEEEecccccchhccCCCeEEEEEeCCC--eEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCC
Q 014368 187 HDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDG--LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEF 264 (426)
Q Consensus 187 ~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG--~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~ 264 (426)
++.+++. ...++++|+|.+. ++ ..+++++.++ .+++++. .+++|+|||||.+.. .+
T Consensus 134 ~~~l~~~----~~~~~vHS~~v~~---~~--~~v~a~~~~g~~~~~a~~~---------~~i~GvQFHPE~~~~-~g--- 191 (201)
T PRK13152 134 YQGIPEK----SDFYFVHSFYVKC---KD--EFVSAKAQYGHKFVASLQK---------DNIFATQFHPEKSQN-LG--- 191 (201)
T ss_pred hhCCCCC----CeEEEEcccEeec---CC--CcEEEEECCCCEEEEEEec---------CCEEEEeCCCeecCh-hh---
Confidence 9888752 1134454554433 32 4677888776 6677773 469999999998743 33
Q ss_pred CCCCcHHHHHHHHH
Q 014368 265 DYPGCPSAYQEFVK 278 (426)
Q Consensus 265 d~~~~~~lf~~Fv~ 278 (426)
..+|++|++
T Consensus 192 -----~~ll~~Fl~ 200 (201)
T PRK13152 192 -----LKLLENFAR 200 (201)
T ss_pred -----HHHHHHHHh
Confidence 589999986
No 59
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.87 E-value=4.2e-21 Score=180.46 Aligned_cols=169 Identities=15% Similarity=0.126 Sum_probs=112.7
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHH
Q 014368 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (426)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~ 112 (426)
.+.+++...|..+.++... +.+. +..+|||||+||+. +.++... | +.-
T Consensus 18 ~~~~~l~~~g~~~~~~~~~-~~~~----l~~~d~iii~GG~~---~~~~~~~---------~---------------~~~ 65 (200)
T PRK13527 18 ALKRALDELGIDGEVVEVR-RPGD----LPDCDALIIPGGES---TTIGRLM---------K---------------REG 65 (200)
T ss_pred HHHHHHHhcCCCeEEEEeC-ChHH----hccCCEEEECCCcH---HHHHHHH---------h---------------hcc
Confidence 3456788899876666543 2222 45799999999963 1111100 0 011
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcc-cccchhhhcccCCCCcceeecccCCCCCceEEEEEec---------
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTL-YQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVK--------- 182 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava~GG~l-~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~--------- 182 (426)
....++.+.+.++|+||||+|+|+|+.++||.. ......++| +.++++..
T Consensus 66 ~~~~i~~~~~~~~pilGIC~G~Qll~~~~gg~~v~~~~~~~lG--------------------~~~~~v~~~~~g~~~~~ 125 (200)
T PRK13527 66 ILDEIKEKIEEGLPILGTCAGLILLAKEVGDDRVTKTEQPLLG--------------------LMDVTVKRNAFGRQRDS 125 (200)
T ss_pred HHHHHHHHHHCCCeEEEECHHHHHHHhhhcCCccCCCCCceee--------------------eeEEEEeeccccCcccc
Confidence 256788888899999999999999999999843 222111222 22222211
Q ss_pred --CCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCCCC
Q 014368 183 --DTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPD 260 (426)
Q Consensus 183 --~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~ 260 (426)
...++..+++ .+.+..+|++.|..+|++++++|+++|+.+ +++. .++||+|||||.+..
T Consensus 126 ~~~~~~~~~~~~-------~~~~~~~H~~~v~~lp~~~~~la~~~~~~~-a~~~---------~~~~g~QfHPE~~~~-- 186 (200)
T PRK13527 126 FEAEIDLSGLDG-------PFHAVFIRAPAITKVGGDVEVLAKLDDRIV-AVEQ---------GNVLATAFHPELTDD-- 186 (200)
T ss_pred EEEeEeccccCC-------cceEEEEccccccccCCCeEEEEEECCEEE-EEEE---------CCEEEEEeCCCCCCC--
Confidence 1122333333 577788999999999999999999998865 6654 469999999997643
Q ss_pred CCCCCCCCcHHHHHHHHHHHH
Q 014368 261 SDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 261 ~~~~d~~~~~~lf~~Fv~av~ 281 (426)
..+|++|++.+.
T Consensus 187 ---------~~l~~~f~~~~~ 198 (200)
T PRK13527 187 ---------TRIHEYFLKKVK 198 (200)
T ss_pred ---------CHHHHHHHHHHh
Confidence 389999999874
No 60
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.86 E-value=1.1e-21 Score=186.33 Aligned_cols=192 Identities=16% Similarity=0.243 Sum_probs=122.0
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhH
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~ 91 (426)
+|+|++-.. .++ .++.++++.+|+.+++++. .+++ +.+|+||+||+++.++.
T Consensus 3 ~v~iid~~~---GN~-----~sl~~al~~~g~~v~vv~~---~~~l----~~~d~iIlPG~g~~~~~------------- 54 (210)
T CHL00188 3 KIGIIDYSM---GNL-----HSVSRAIQQAGQQPCIINS---ESEL----AQVHALVLPGVGSFDLA------------- 54 (210)
T ss_pred EEEEEEcCC---ccH-----HHHHHHHHHcCCcEEEEcC---HHHh----hhCCEEEECCCCchHHH-------------
Confidence 678876441 111 3457888999999999864 2333 46899999996543211
Q ss_pred HHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccch---hhhcccCC--CCcceeec
Q 014368 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIE---KEVSRKCP--ENQRVVHI 166 (426)
Q Consensus 92 ~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~---~e~g~~~~--~~~~v~H~ 166 (426)
+.++++ .-....++.+++.++|+||||+|||+|+...++...+... .... +++ ...+++|+
T Consensus 55 ~~~l~~-------------~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~-~~~~~~~~~~p~~ 120 (210)
T CHL00188 55 MKKLEK-------------KGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVK-RLKHSPVKVIPHM 120 (210)
T ss_pred HHHHHH-------------CCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEEE-ECCCCCCCccCcc
Confidence 122221 1123456677788999999999999999987654322211 1110 111 12367888
Q ss_pred ccCCCCCceEEEEEecC------CcccccccccccccceEEEEecccccchhccCCCeEEEE-Ee---CCCeEEEEEeCC
Q 014368 167 DYDNYDGHRHVVKVVKD------TPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMA-FA---PDGLIEGFYDPD 236 (426)
Q Consensus 167 ~~~~~~g~~~~V~v~~~------s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA-~s---~dG~Veaie~~~ 236 (426)
+|+. |++..+ +.+++.+++ .+.+..+|++.+. |++...++ ++ .++.+++++.
T Consensus 121 Gw~~-------v~~~~~~~~~~~~~lf~~l~~-------~~~v~~~HS~~v~--p~~~~~l~~t~~~~~~~~v~a~~~-- 182 (210)
T CHL00188 121 GWNR-------LECQNSECQNSEWVNWKAWPL-------NPWAYFVHSYGVM--PKSQACATTTTFYGKQQMVAAIEY-- 182 (210)
T ss_pred CCcc-------ceecCCcccccCChhhcCCCC-------CCEEEEeCccEec--CCCCceEEEEEecCCcceEEEEec--
Confidence 7654 555433 457777665 4667788998874 33434333 32 3567999985
Q ss_pred CCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHH
Q 014368 237 AYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKA 279 (426)
Q Consensus 237 ~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a 279 (426)
.+++|+|||||.+ ++.+ ..++++|++.
T Consensus 183 -------~~i~GvQFHPE~s-~~~G--------~~il~nfl~~ 209 (210)
T CHL00188 183 -------DNIFAMQFHPEKS-GEFG--------LWLLREFMKK 209 (210)
T ss_pred -------CCEEEEecCCccc-cHhH--------HHHHHHHHhh
Confidence 3699999999998 5555 5899999863
No 61
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.86 E-value=1.4e-21 Score=197.84 Aligned_cols=188 Identities=22% Similarity=0.388 Sum_probs=142.1
Q ss_pred CCCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCC
Q 014368 8 VILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNL 87 (426)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~ 87 (426)
.+--+|+|++-...+ +.-+-+.+++......++|.++....|.+ -.+-||||+|||+ ++|.++..++
T Consensus 14 ~~~d~i~iLD~GaQY--------~~~I~RrvRel~v~se~~p~~t~~~~i~~--~~~rgiIiSGGP~---SVya~dAP~~ 80 (552)
T KOG1622|consen 14 SYFDTILILDFGAQY--------GKVIDRRVRELNVQSEILPLTTPAKTITE--YGPRGIIISGGPN---SVYAEDAPSF 80 (552)
T ss_pred ccCceEEEEeccchh--------hHHHHHHHHHHhhhhhhccCCChhhhhhc--CCceEEEEeCCCC---ccccCcCCCC
Confidence 344577777654321 12234567777777889999888888776 3799999999984 6788766532
Q ss_pred ChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecc
Q 014368 88 SPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHID 167 (426)
Q Consensus 88 ~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~ 167 (426)
|+ ..++.++|+||||+|||+||..+||+|.+...+|+|
T Consensus 81 ------------------dp-----------~if~~~vpvLGICYGmQ~i~~~~Gg~V~~~~~RE~G------------- 118 (552)
T KOG1622|consen 81 ------------------DP-----------AIFELGVPVLGICYGMQLINKLNGGTVVKGMVREDG------------- 118 (552)
T ss_pred ------------------Ch-----------hHhccCCcceeehhHHHHHHHHhCCccccccccCCC-------------
Confidence 21 123468999999999999999999999887655655
Q ss_pred cCCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEE
Q 014368 168 YDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIM 247 (426)
Q Consensus 168 ~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~ 247 (426)
...|.+.....||+.+... ....|...|++.+.++|.+|++.|++.+..+.++.+.. +++|
T Consensus 119 -------~~eI~v~~~~~lF~~~~~~-----~~~~VlltHgdsl~~v~~g~kv~a~s~n~~va~i~~e~-------kkiy 179 (552)
T KOG1622|consen 119 -------EDEIEVDDSVDLFSGLHKT-----EFMTVLLTHGDSLSKVPEGFKVVAFSGNKPVAGILNEL-------KKIY 179 (552)
T ss_pred -------CceEEcCchhhhhhhhccc-----ceeeeeeccccchhhccccceeEEeecCcceeeehhhh-------hhhh
Confidence 3456665556677666542 13368889999999999999999999999999999986 8999
Q ss_pred EEcccCCccCCCCCCCCCCCCcHHHHHHHH
Q 014368 248 GLQFHPERMRRPDSDEFDYPGCPSAYQEFV 277 (426)
Q Consensus 248 GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv 277 (426)
|+|||||.+.++.+. .++.+|+
T Consensus 180 glqfhpEV~~t~~g~--------~ll~nFl 201 (552)
T KOG1622|consen 180 GLQFHPEVTLTPNGK--------ELLKNFL 201 (552)
T ss_pred cCCCCCcccccCchh--------HHHHHHH
Confidence 999999999998875 5555555
No 62
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.86 E-value=1.4e-21 Score=183.01 Aligned_cols=172 Identities=19% Similarity=0.243 Sum_probs=114.2
Q ss_pred HHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHH
Q 014368 34 HLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIE 113 (426)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e 113 (426)
..+.++..|+.+++++.. ++ ++.+|+||||||+. +. +. .++++ +.-.
T Consensus 14 ~~~~l~~~g~~v~v~~~~---~~----l~~~d~iiipG~~~--~~---~~--------~~~~~-------------~~~~ 60 (198)
T cd01748 14 VANALERLGAEVIITSDP---EE----ILSADKLILPGVGA--FG---DA--------MANLR-------------ERGL 60 (198)
T ss_pred HHHHHHHCCCeEEEEcCh---HH----hccCCEEEECCCCc--HH---HH--------HHHHH-------------HcCh
Confidence 467889999999998742 22 35699999988742 11 00 00110 0112
Q ss_pred HHHHHHHHHcCCCEEEEehHHHHHHHH------------hCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEe
Q 014368 114 LRLAKLCLERNIPYLGICRGSQVLNVA------------CGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVV 181 (426)
Q Consensus 114 ~~lir~ale~~iPILGIClG~QlLava------------~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~ 181 (426)
.+.++.+.++++||||||+|||+|+.+ ++|++.+.... ...+++|+ +++.+.+.
T Consensus 61 ~~~i~~~~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~-------~~~~~~~~-------G~~~v~~~ 126 (198)
T cd01748 61 IEALKEAIASGKPFLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPAS-------EGLKVPHM-------GWNQLEIT 126 (198)
T ss_pred HHHHHHHHHCCCcEEEECHHHHHhccccccCCCCCCCCCcceEEEECCCC-------CCceEEEe-------ccceEEEC
Confidence 467788888899999999999999998 33433332100 00112343 35667777
Q ss_pred cCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCC-eEEEEEeCCCCCCCCCCcEEEEcccCCccCCCC
Q 014368 182 KDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDG-LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPD 260 (426)
Q Consensus 182 ~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG-~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~ 260 (426)
.+++++..+++ .+.+..+|++.+.. ++.+.++|+++++ .++++.. + .++||+|||||.+. +.
T Consensus 127 ~~~~lf~~l~~-------~~~v~~~Hs~~v~~-~~~~~~la~s~~~~~~~~~~~-~-------~~i~GvQFHPE~~~-~~ 189 (198)
T cd01748 127 KESPLFKGIPD-------GSYFYFVHSYYAPP-DDPDYILATTDYGGKFPAAVE-K-------DNIFGTQFHPEKSG-KA 189 (198)
T ss_pred CCChhhhCCCC-------CCeEEEEeEEEEec-CCcceEEEEecCCCeEEEEEE-c-------CCEEEEECCCcccc-Hh
Confidence 78888877765 46777899999874 4557889988776 4445443 2 68999999999884 33
Q ss_pred CCCCCCCCcHHHHHHHH
Q 014368 261 SDEFDYPGCPSAYQEFV 277 (426)
Q Consensus 261 ~~~~d~~~~~~lf~~Fv 277 (426)
+ ..++++|+
T Consensus 190 g--------~~~~~nf~ 198 (198)
T cd01748 190 G--------LKLLKNFL 198 (198)
T ss_pred H--------HHHHHhhC
Confidence 3 58889884
No 63
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.86 E-value=1.9e-21 Score=182.52 Aligned_cols=172 Identities=20% Similarity=0.205 Sum_probs=111.6
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHH
Q 014368 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (426)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~ 112 (426)
++.++++..|+.++++. +.++ ++.+|+||+|||++ +. . .+.+++. .-
T Consensus 14 ~~~~~l~~~g~~v~~~~---~~~~----l~~~d~lilpG~g~--~~---~--------~~~~l~~-------------~~ 60 (199)
T PRK13181 14 SVANALKRLGVEAVVSS---DPEE----IAGADKVILPGVGA--FG---Q--------AMRSLRE-------------SG 60 (199)
T ss_pred HHHHHHHHCCCcEEEEc---ChHH----hccCCEEEECCCCC--HH---H--------HHHHHHH-------------CC
Confidence 45667889999988873 3333 34699999999753 11 0 0112211 01
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHHh-----------CCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEe
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVAC-----------GGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVV 181 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava~-----------GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~ 181 (426)
....++.+++.++|+||||+|+|+|+.++ |+++.+... ...+.++. +++.+.+.
T Consensus 61 ~~~~i~~~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~~--------~~~~~~~~-------G~~~v~~~ 125 (199)
T PRK13181 61 LDEALKEHVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFRS--------EPLKVPQM-------GWNSVKPL 125 (199)
T ss_pred hHHHHHHHHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcCC--------CCCCCCcc-------CccccccC
Confidence 23566777788999999999999999994 333332210 00112232 46677777
Q ss_pred cCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCC--eEEEEEeCCCCCCCCCCcEEEEcccCCccCCC
Q 014368 182 KDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDG--LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRP 259 (426)
Q Consensus 182 ~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG--~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~ 259 (426)
+++++++.+++ .+.+..+|++.+..++ .+.++|++++| .+++++. .++||+|||||.+. +
T Consensus 126 ~~~~lf~~l~~-------~~~~~~~Hs~~v~~~~-~~~~lA~s~~~~~~~~~~~~---------~~i~GvQFHPE~~~-~ 187 (199)
T PRK13181 126 KESPLFKGIEE-------GSYFYFVHSYYVPCED-PEDVLATTEYGVPFCSAVAK---------DNIYAVQFHPEKSG-K 187 (199)
T ss_pred CCChhHcCCCC-------CCEEEEeCeeEeccCC-cccEEEEEcCCCEEEEEEEC---------CCEEEEECCCccCC-H
Confidence 78889888876 3456667777775444 35688988765 3445543 46999999999873 3
Q ss_pred CCCCCCCCCcHHHHHHHHH
Q 014368 260 DSDEFDYPGCPSAYQEFVK 278 (426)
Q Consensus 260 ~~~~~d~~~~~~lf~~Fv~ 278 (426)
.+ ..++++|++
T Consensus 188 ~g--------~~ll~nfl~ 198 (199)
T PRK13181 188 AG--------LKLLKNFAE 198 (199)
T ss_pred HH--------HHHHHHHHh
Confidence 33 589999975
No 64
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.85 E-value=6.4e-21 Score=171.32 Aligned_cols=193 Identities=23% Similarity=0.398 Sum_probs=139.1
Q ss_pred CCCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCCCCCCCcccccCCC
Q 014368 8 VILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSN 86 (426)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~ 86 (426)
.++|+|. ++++++++++.++|+ .-..|+...+.+.+. +.+++... ++++++|+.||+ +|.
T Consensus 17 ~n~piv~-IDNYDSFT~Nv~qYL-------~~e~g~~~~VyRNDeiTV~El~~~--NP~~LliSPGPG-~P~-------- 77 (223)
T KOG0026|consen 17 QNGPIIV-IDNYDSFTYNLCQYL-------MGELGCHFEVYRNDELTVEELKRK--NPRGLLISPGPG-TPQ-------- 77 (223)
T ss_pred ccCCEEE-EecccchhHHHHHHh-------hhccCccEEEEecCcccHHHHhhc--CCCeEEecCCCC-CCc--------
Confidence 3567654 488888888887774 345788777777654 55666553 689999999986 343
Q ss_pred CChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeec
Q 014368 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHI 166 (426)
Q Consensus 87 ~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~ 166 (426)
+..+ -.+.+++ +...+|+||||.|.|.|..++||++.... | .+.|
T Consensus 78 ---------------DsGI-------s~~~i~~-f~~~iP~fGvCMGlQCi~e~fGGkv~~a~---~--------~i~H- 122 (223)
T KOG0026|consen 78 ---------------DSGI-------SLQTVLE-LGPLVPLFGVCMGLQCIGEAFGGKIVRSP---F--------GVMH- 122 (223)
T ss_pred ---------------cccc-------hHHHHHH-hCCCCceeeeehhhhhhhhhhCcEEeccC---c--------ceee-
Confidence 1111 1233333 34579999999999999999999987642 1 1334
Q ss_pred ccCCCCCceEEEEEec--CCcccccccccccccceEEEEecccccchh--ccC-CCeEEEEEeCCCeEEEEEeCCCCCCC
Q 014368 167 DYDNYDGHRHVVKVVK--DTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLA-QRFVPMAFAPDGLIEGFYDPDAYNPA 241 (426)
Q Consensus 167 ~~~~~~g~~~~V~v~~--~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~--~Lp-~g~~vlA~s~dG~Veaie~~~~~~~~ 241 (426)
|....|.... ...+|+.+++ .+.|..||+.+.+ ++| ..++|+||++||.|+|.+|+. |
T Consensus 123 ------GK~S~i~~D~~~~~G~f~g~~q-------~~~V~RYHSLa~~~sSlP~d~L~VTawTEnG~iMgaRHkK-Y--- 185 (223)
T KOG0026|consen 123 ------GKSSMVHYDEKGEEGLFSGLSN-------PFIVGRYHSLVIEKDSFPSDELEVTAWTEDGLVMAARHRK-Y--- 185 (223)
T ss_pred ------ccccccccCCccccccccCCCC-------CeEEEeeeeeeeecccCCccceeeeEeccCcEEEeeeccc-c---
Confidence 2233343322 1346777776 6889999998764 577 789999999999999999996 3
Q ss_pred CCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014368 242 EGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 242 ~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
..+-|||||||...+..+ ..+.+||++.+.
T Consensus 186 --~~ieGVQfHPESIlteeG--------k~~irNflni~~ 215 (223)
T KOG0026|consen 186 --KHIQGVQFHPESIITTEG--------KTIVRNFIKIVE 215 (223)
T ss_pred --ccccceeecchhhhhhhh--------HHHHHHHHHhcc
Confidence 458999999999998877 477899998764
No 65
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.85 E-value=1.5e-20 Score=176.51 Aligned_cols=175 Identities=19% Similarity=0.206 Sum_probs=111.8
Q ss_pred HHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHH
Q 014368 34 HLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIE 113 (426)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e 113 (426)
+.++|.+.|+.++++.. .++ ++.+|||||||++. +. +.+.+++ +
T Consensus 16 ~~~~l~~~g~~~~~v~~---~~~----~~~~d~iIlPG~G~--~~-----------~~~~~l~----------------~ 59 (196)
T PRK13170 16 VKFAIERLGYEPVVSRD---PDV----ILAADKLFLPGVGT--AQ-----------AAMDQLR----------------E 59 (196)
T ss_pred HHHHHHHCCCeEEEECC---HHH----hCCCCEEEECCCCc--hH-----------HHHHHHH----------------H
Confidence 45578889999998863 333 35689999998542 11 0112221 1
Q ss_pred HHHHHHHHHcCCCEEEEehHHHHHHHHhCCcc-cccch---hhhcccCC-CCcceeecccCCCCCceEEEEEecCCcccc
Q 014368 114 LRLAKLCLERNIPYLGICRGSQVLNVACGGTL-YQDIE---KEVSRKCP-ENQRVVHIDYDNYDGHRHVVKVVKDTPLHD 188 (426)
Q Consensus 114 ~~lir~ale~~iPILGIClG~QlLava~GG~l-~~~~~---~e~g~~~~-~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~ 188 (426)
..+++.+.+.++||||||+|||+|+.++++.. .+... .... +++ ...+++|+ +|++|.+.+++++++
T Consensus 60 ~~l~~~i~~~~~PilGIClG~Qll~~~~~~~~~~~~lg~~~g~v~-~~~~~~~~~p~~-------G~~~v~~~~~~~l~~ 131 (196)
T PRK13170 60 RELIDLIKACTQPVLGICLGMQLLGERSEESGGVDCLGIIDGPVK-KMTDFGLPLPHM-------GWNQVTPQAGHPLFQ 131 (196)
T ss_pred cChHHHHHHcCCCEEEECHHHHHHhhhcccCCCCCCcccccEEEE-ECCCCCCCCCcc-------ccceeEeCCCChhhh
Confidence 12445555668999999999999999985422 11110 0000 000 11234554 467788877888888
Q ss_pred cccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCC
Q 014368 189 WFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPG 268 (426)
Q Consensus 189 ~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~ 268 (426)
.+++ .+.+..+|++++ |++..++|++++|...+..... .++||+|||||++. ..+
T Consensus 132 ~l~~-------~~~v~~~Hs~~l---p~~~~~la~s~~~~~~~~~~~~-------~~i~G~QFHPE~~~-~~G------- 186 (196)
T PRK13170 132 GIED-------GSYFYFVHSYAM---PVNEYTIAQCNYGEPFSAAIQK-------DNFFGVQFHPERSG-AAG------- 186 (196)
T ss_pred CCCc-------CCEEEEECeeec---CCCCcEEEEecCCCeEEEEEEc-------CCEEEEECCCCCcc-ccc-------
Confidence 7776 466778898764 5667788988876332222332 56999999999985 455
Q ss_pred cHHHHHHHHH
Q 014368 269 CPSAYQEFVK 278 (426)
Q Consensus 269 ~~~lf~~Fv~ 278 (426)
..++++|++
T Consensus 187 -~~~l~nfl~ 195 (196)
T PRK13170 187 -AQLLKNFLE 195 (196)
T ss_pred -HHHHHHHhh
Confidence 589999975
No 66
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.83 E-value=3.1e-20 Score=174.20 Aligned_cols=170 Identities=21% Similarity=0.247 Sum_probs=111.2
Q ss_pred HHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHH
Q 014368 34 HLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIE 113 (426)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e 113 (426)
..+.++..|+.+.+++.. ++ ++.+|+||++||.+ +. +.++|++.. . .
T Consensus 14 l~~~l~~~g~~v~v~~~~---~~----l~~~d~lii~G~~~--~~-----------~~~~~l~~~------------~-~ 60 (196)
T TIGR01855 14 VKRALKRVGAEPVVVKDS---KE----AELADKLILPGVGA--FG-----------AAMARLREN------------G-L 60 (196)
T ss_pred HHHHHHHCCCcEEEEcCH---HH----hccCCEEEECCCCC--HH-----------HHHHHHHHc------------C-c
Confidence 456788899999998842 22 35699999988642 11 012233210 0 1
Q ss_pred HHHHHHHHHcCCCEEEEehHHHHHHHHh------------CCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEe
Q 014368 114 LRLAKLCLERNIPYLGICRGSQVLNVAC------------GGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVV 181 (426)
Q Consensus 114 ~~lir~ale~~iPILGIClG~QlLava~------------GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~ 181 (426)
..+++.+++.++|+||||+|+|+|+.++ ||++.+... ....++ ++..+.+.
T Consensus 61 ~~l~~~~~~~~~pvlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~~----------~~~~~~-------g~~~~~~~ 123 (196)
T TIGR01855 61 DLFVELVVRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLEA----------RKVPHM-------GWNEVHPV 123 (196)
T ss_pred HHHHHHHHhCCCCEEEECHHHHHhhhccccCCCCCCcceeeEEEEECCC----------CCCCcc-------cCeeeeeC
Confidence 2344777888999999999999999983 444443210 011222 35566666
Q ss_pred cCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCC-eEEEEEeCCCCCCCCCCcEEEEcccCCccCCCC
Q 014368 182 KDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDG-LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPD 260 (426)
Q Consensus 182 ~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG-~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~ 260 (426)
.++++++.+++ .+.+..+|++.+...+ + .+++.+++| ..+++ ... .++||+|||||+.. +.
T Consensus 124 ~~~~l~~~l~~-------~~~v~~~Hs~~v~~~~-~-~~~a~~~~g~~~~~~-~~~-------~~i~GvQFHPE~~~-~~ 185 (196)
T TIGR01855 124 KESPLLNGIDE-------GAYFYFVHSYYAVCEE-E-AVLAYADYGEKFPAA-VQK-------GNIFGTQFHPEKSG-KT 185 (196)
T ss_pred CCChHHhCCCC-------CCEEEEECeeEecCCC-C-cEEEEEcCCcEEEEE-Eec-------CCEEEEECCCccCc-Hh
Confidence 77788887776 5678889999997544 4 467777665 44443 333 57999999999774 33
Q ss_pred CCCCCCCCcHHHHHHHHHH
Q 014368 261 SDEFDYPGCPSAYQEFVKA 279 (426)
Q Consensus 261 ~~~~d~~~~~~lf~~Fv~a 279 (426)
...++++|+++
T Consensus 186 --------g~~ll~~f~~~ 196 (196)
T TIGR01855 186 --------GLKLLENFLEL 196 (196)
T ss_pred --------HHHHHHHHHhC
Confidence 36899999863
No 67
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.83 E-value=7.7e-20 Score=173.66 Aligned_cols=178 Identities=17% Similarity=0.226 Sum_probs=114.6
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHH
Q 014368 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (426)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~ 112 (426)
+..+++...|..++++. +.+++ +.+|+||+|||++.+. .+.++++ .-
T Consensus 14 s~~~al~~~~~~~~~~~---~~~~l----~~~d~iIlPG~g~~~~-------------~~~~l~~-------------~g 60 (210)
T PRK14004 14 SCLKAVSLYTKDFVFTS---DPETI----ENSKALILPGDGHFDK-------------AMENLNS-------------TG 60 (210)
T ss_pred HHHHHHHHcCCeEEEEC---CHHHh----ccCCEEEECCCCchHH-------------HHHHHHH-------------cC
Confidence 34678899999888774 44443 4689999999964211 1223321 11
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHHhCCc-------------ccccchhhhcccCC-CCcceeecccCCCCCceEEE
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGT-------------LYQDIEKEVSRKCP-ENQRVVHIDYDNYDGHRHVV 178 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava~GG~-------------l~~~~~~e~g~~~~-~~~~v~H~~~~~~~g~~~~V 178 (426)
....++.+.+.++|+||||+|||+|+.+++-. +.+..-.. ++ ...+++|++|+. |
T Consensus 61 l~~~i~~~~~~~~pilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~----~~~~~~~~ph~Gw~~-------v 129 (210)
T PRK14004 61 LRSTIDKHVESGKPLFGICIGFQILFESSEETNQGTKKEQIEGLGYIKGKIKK----FEGKDFKVPHIGWNR-------L 129 (210)
T ss_pred cHHHHHHHHHcCCCEEEECHhHHHHHHhcccccCCCcCcccCCcceeEEEEEE----cCCCCCcCCccCccc-------c
Confidence 24566777788999999999999999987521 11110011 11 124678988764 4
Q ss_pred EEe--cCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCC-Ce-EEEEEeCCCCCCCCCCcEEEEcccCC
Q 014368 179 KVV--KDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPD-GL-IEGFYDPDAYNPAEGKFIMGLQFHPE 254 (426)
Q Consensus 179 ~v~--~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~d-G~-Veaie~~~~~~~~~~~~i~GvQFHPE 254 (426)
.+. .+++++..+++ .+.+..+|++.+. .+..+.+++++++ |. +.++..+ .+++|+|||||
T Consensus 130 ~~~~~~~~~lf~~l~~-------~~~v~~~HS~~~~-~~~~l~~sa~~~~~g~~~~a~~~~--------~~i~GvQFHPE 193 (210)
T PRK14004 130 QIRRKDKSKLLKGIGD-------QSFFYFIHSYRPT-GAEGNAITGLCDYYQEKFPAVVEK--------ENIFGTQFHPE 193 (210)
T ss_pred eeccCCCCccccCCCC-------CCEEEEeceeecC-CCCcceEEEeeeECCEEEEEEEec--------CCEEEEeCCcc
Confidence 433 35667777765 4566678887542 2334556666655 53 4455543 67999999999
Q ss_pred ccCCCCCCCCCCCCcHHHHHHHHHH
Q 014368 255 RMRRPDSDEFDYPGCPSAYQEFVKA 279 (426)
Q Consensus 255 ~~~~~~~~~~d~~~~~~lf~~Fv~a 279 (426)
++. +.+ ..++++|++.
T Consensus 194 ~s~-~~G--------~~iL~nfl~~ 209 (210)
T PRK14004 194 KSH-THG--------LKLLENFIEF 209 (210)
T ss_pred cCc-hhH--------HHHHHHHHhh
Confidence 988 456 5899999875
No 68
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.81 E-value=5.2e-19 Score=169.70 Aligned_cols=194 Identities=22% Similarity=0.265 Sum_probs=123.5
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhH
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~ 91 (426)
+|+|+.-+... ....++++++.+|+.+++++.... . ++.+||||||||.+ |++....
T Consensus 2 ~v~Vl~~~G~n-------~~~~~~~al~~~G~~~~~i~~~~~--~----l~~~d~lilpGG~~-----~~d~~~~----- 58 (227)
T TIGR01737 2 KVAVIRFPGTN-------CDRDTVYALRLLGVDAEIVWYEDG--S----LPDYDGVVLPGGFS-----YGDYLRA----- 58 (227)
T ss_pred eEEEEeCCCcC-------cHHHHHHHHHHCCCeEEEEecCCC--C----CCCCCEEEECCCCc-----ccccccc-----
Confidence 67888766432 223356889999999999875422 1 46799999999963 2221100
Q ss_pred HHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH--hCCcccccchhhhcccCCCCcceeecccC
Q 014368 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA--CGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (426)
Q Consensus 92 ~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava--~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (426)
. ...++.....+++.+.+.++|++|||.|+|+|+.+ ++|++.++...+++.
T Consensus 59 -----------~--~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~~n~~~~~~~-------------- 111 (227)
T TIGR01737 59 -----------G--AIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGALLPNDSLRFIC-------------- 111 (227)
T ss_pred -----------c--chhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCceeecCCCceEE--------------
Confidence 0 00011223567888888999999999999999996 788777654333321
Q ss_pred CCCCceEEEEEec-CCcccccccccccccceEEEEecccccch--------hccCCCeEEEEEe------------CCC-
Q 014368 170 NYDGHRHVVKVVK-DTPLHDWFKDSLEEEKMEIWVNSYHHQGV--------KRLAQRFVPMAFA------------PDG- 227 (426)
Q Consensus 170 ~~~g~~~~V~v~~-~s~L~~~~~~~~~~~~~~~~Vns~H~~~V--------~~Lp~g~~vlA~s------------~dG- 227 (426)
.+..+++.. ++++++.++.. ..+.+.-.|+++- ++|.....+.+.. ++|
T Consensus 112 ----~~~~~~v~~~~~~~~~~~~~g-----~~~~~pi~H~eG~y~~~~~~l~~l~~~~~i~~~y~d~~g~~~~~~npngs 182 (227)
T TIGR01737 112 ----RWVYLRVENADTIFTKNYKKG-----EVIRIPIAHGEGRYYADDETLARLESNDQVVFRYCDEDGDVAEEANPNGS 182 (227)
T ss_pred ----EeEEEEECCCCChhhccCCCC-----CEEEEEeEcCCcCeEcCHHHHHHHHHCCcEEEEEECCCCCCCCCCCCCCC
Confidence 244555543 35666666531 1334433454432 3454555544332 444
Q ss_pred --eEEEEEeCCCCCCCCCCcEEEEcccCCccC-----CCCCCCCCCCCcHHHHHHHHHH
Q 014368 228 --LIEGFYDPDAYNPAEGKFIMGLQFHPERMR-----RPDSDEFDYPGCPSAYQEFVKA 279 (426)
Q Consensus 228 --~Veaie~~~~~~~~~~~~i~GvQFHPE~~~-----~~~~~~~d~~~~~~lf~~Fv~a 279 (426)
.|+||.+++ .+++|+|||||+.. ++++ ..+|++|++.
T Consensus 183 ~~~i~~i~~~~-------~~~~g~~~HpE~~~~~~~~~~~g--------~~~~~~~~~~ 226 (227)
T TIGR01737 183 VGNIAGIVNER-------GNVLGMMPHPERASEKLLGGDDG--------LKLFESLVEW 226 (227)
T ss_pred HHHHcccCCCC-------CCEEEEecCchhhcccccCCccc--------HHHHHHHHhh
Confidence 789999987 88999999999984 4444 5899999864
No 69
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.80 E-value=3.8e-19 Score=165.17 Aligned_cols=172 Identities=13% Similarity=0.082 Sum_probs=106.0
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHH
Q 014368 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (426)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~ 112 (426)
.++++++..|+.++++... ++ ++.+||||++||++ ..++... ++..
T Consensus 12 e~~~~l~~~g~~v~~v~~~---~~----l~~~dgiii~Gg~~---~~~~~~~------------------------~~~~ 57 (183)
T cd01749 12 EHIRALERLGVEVIEVRTP---ED----LEGIDGLIIPGGES---TTIGKLL------------------------RRTG 57 (183)
T ss_pred HHHHHHHHCCCeEEEECCH---HH----hccCCEEEECCchH---HHHHHHH------------------------HhCC
Confidence 4558899999999988752 22 46799999999963 2221110 1111
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEecCCcccccccc
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKD 192 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~~~ 192 (426)
....++.+.+.++|+||||.|+|+|+.++|+. ... ..+|- -+..+....+. +.-++....+. ....+.
T Consensus 58 ~~~~i~~~~~~g~PvlGiC~G~qlL~~~~~~~--~~~-~glG~---~~~~v~~~~~g-~~~g~~~~~l~-----~~~~~~ 125 (183)
T cd01749 58 LLDPLREFIRAGKPVFGTCAGLILLAKEVEDQ--GGQ-PLLGL---LDITVRRNAFG-RQVDSFEADLD-----IPGLGL 125 (183)
T ss_pred HHHHHHHHHHcCCeEEEECHHHHHHHHHhccc--CCC-CccCc---eeEEEEeeccc-cccceEEEcCC-----CCcCCC
Confidence 24567888889999999999999999999874 100 01110 00000000000 00112222221 111111
Q ss_pred cccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHH
Q 014368 193 SLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSA 272 (426)
Q Consensus 193 ~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~l 272 (426)
..+.+..+|.+.|..+|++++++|.+++ .+++++.+ ++||+|||||.+.. .++
T Consensus 126 ------~~~~~~~~h~~~v~~~p~~~~~la~~~~-~~~a~~~~---------~~~g~qfHPE~~~~-----------~~~ 178 (183)
T cd01749 126 ------GPFPAVFIRAPVIEEVGPGVEVLAEYDG-KIVAVRQG---------NVLATSFHPELTDD-----------TRI 178 (183)
T ss_pred ------CccEEEEEECcEEEEcCCCcEEEEecCC-EEEEEEEC---------CEEEEEcCCccCCC-----------cch
Confidence 1466667799999899999999999865 44588753 59999999998743 267
Q ss_pred HHHHH
Q 014368 273 YQEFV 277 (426)
Q Consensus 273 f~~Fv 277 (426)
|+.|+
T Consensus 179 ~~~f~ 183 (183)
T cd01749 179 HEYFL 183 (183)
T ss_pred hhhhC
Confidence 77774
No 70
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.80 E-value=1.6e-18 Score=161.44 Aligned_cols=171 Identities=16% Similarity=0.140 Sum_probs=104.3
Q ss_pred HHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHH
Q 014368 34 HLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIE 113 (426)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e 113 (426)
+++++++.|+.++++.. .++ ++.+||||||||++ ..++. +.| +...
T Consensus 14 ~~~~l~~~g~~~~~v~~---~~~----l~~~d~liipGG~~---~~~~~---------l~~---------------~~~l 59 (184)
T TIGR03800 14 HARALEALGVEGVEVKR---PEQ----LDEIDGLIIPGGES---TTLSR---------LLD---------------KYGM 59 (184)
T ss_pred HHHHHHHCCCEEEEECC---hHH----hccCCEEEECCCCH---HHHHH---------HHH---------------hccH
Confidence 67899999999998864 223 35699999999952 11110 000 0112
Q ss_pred HHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEecCCccccccccc
Q 014368 114 LRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDS 193 (426)
Q Consensus 114 ~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~~~~ 193 (426)
...++.+.+.++|+||||.|+|+|+.++...... .+|- -+..+....+. +.-....+.+... ..+.
T Consensus 60 ~~~i~~~~~~g~pilGIC~G~qlL~~~~~~~~~~----~lg~---~~~~v~~~~~g-~~~~s~~~~l~~~-----~~~~- 125 (184)
T TIGR03800 60 FEPLRNFILSGLPVFGTCAGLIMLAKEIIGQKEG----YLGL---LDMTVERNAYG-RQVDSFEAEVDIK-----GVGD- 125 (184)
T ss_pred HHHHHHHHHcCCcEEEECHHHHHHHhhhccCCCC----ccCc---EEEEEEeeccC-CccccEEEEeecc-----cCCC-
Confidence 3567778889999999999999999998432110 0110 00001010000 0001222222211 1111
Q ss_pred ccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHH
Q 014368 194 LEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAY 273 (426)
Q Consensus 194 ~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf 273 (426)
..+.....|.+.|..+|++++++|++++ .++|++. .++||+|||||.+.. .++|
T Consensus 126 -----~~~~~~~~h~~~v~~lp~~~~vla~~~~-~~~a~~~---------~~~~gvQfHPE~~~~-----------~~~~ 179 (184)
T TIGR03800 126 -----DPITGVFIRAPKIVSVGNGVEILAKVGN-RIVAVRQ---------GNILVSSFHPELTDD-----------HRVH 179 (184)
T ss_pred -----CcceEEEEcCCCcccCCCCeEEEEEeCC-eeEEEEe---------CCEEEEEeCCccCCC-----------chHH
Confidence 1245556799999999999999999765 5568764 359999999998743 2799
Q ss_pred HHHHH
Q 014368 274 QEFVK 278 (426)
Q Consensus 274 ~~Fv~ 278 (426)
+.|++
T Consensus 180 ~~f~~ 184 (184)
T TIGR03800 180 EYFLE 184 (184)
T ss_pred HHhhC
Confidence 99873
No 71
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.77 E-value=3.5e-18 Score=173.03 Aligned_cols=181 Identities=23% Similarity=0.313 Sum_probs=128.2
Q ss_pred hhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHH
Q 014368 55 HMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (426)
Q Consensus 55 ~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~ 134 (426)
+...+.+..+|||++|||-+.. .- ...+..+++|+++++|+||||+||
T Consensus 355 ~~aW~~l~~adGilvPGGFG~R-------Gv-------------------------eG~i~Aak~ARen~iP~LGiCLGm 402 (585)
T KOG2387|consen 355 HAAWQKLKSADGILVPGGFGDR-------GV-------------------------EGKILAAKWARENKIPFLGICLGM 402 (585)
T ss_pred HHHHHHhccCCeEEeCCccccc-------ch-------------------------hHHHHHHHHHHhcCCCeEeeehhh
Confidence 3445667889999999995311 10 123678999999999999999999
Q ss_pred HHHHHHhCCccc--ccc-hhhhcccCCC-------CcceeecccCCCCCceEEEEEecCCccccccccc-cccc--ceEE
Q 014368 135 QVLNVACGGTLY--QDI-EKEVSRKCPE-------NQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDS-LEEE--KMEI 201 (426)
Q Consensus 135 QlLava~GG~l~--~~~-~~e~g~~~~~-------~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~~~~-~~~~--~~~~ 201 (426)
|+-.+.+..++. ++. +.||.+.... .....|++-...-|.+..+....+|.+.++|++. .+.+ +|+|
T Consensus 403 Q~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~~mGgtMRLG~R~t~f~~~~s~~~kLYG~~~~V~ERHRHRy 482 (585)
T KOG2387|consen 403 QLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKTHMGGTMRLGSRRTVFQDKDSKLRKLYGNVEFVDERHRHRY 482 (585)
T ss_pred hHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcccccceeeecccceeeecCchHHHHHhCCchhhhhhhhcce
Confidence 999999987764 233 3566543211 1112233333344555566666678888999864 3344 4788
Q ss_pred EEecccccchhccCCCeEEEEEeCCC-eEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHH
Q 014368 202 WVNSYHHQGVKRLAQRFVPMAFAPDG-LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAV 280 (426)
Q Consensus 202 ~Vns~H~~~V~~Lp~g~~vlA~s~dG-~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av 280 (426)
.||..--..+.+ .|+..++.+.+| .+|.|+.++ |++|+|+|||||+.+.|..++ ++|-..+.+.
T Consensus 483 EVNP~~v~~le~--~Gl~FvGkd~~g~rmeI~El~~------HP~fVg~QfHPE~~srp~kps-------p~flGlv~as 547 (585)
T KOG2387|consen 483 EVNPEMVKQLEQ--AGLSFVGKDVTGKRMEIIELES------HPFFVGVQFHPEFKSRPDKPS-------PLFLGLVAAS 547 (585)
T ss_pred ecCHHHHHHHHh--cCcEEEeecCCCcEEEEEEcCC------CCceeeeccCHHHhcCCCCCC-------cchhHhHHHH
Confidence 888755555544 789999999888 899999987 799999999999999998873 6666666654
Q ss_pred HH
Q 014368 281 IA 282 (426)
Q Consensus 281 ~~ 282 (426)
..
T Consensus 548 ~~ 549 (585)
T KOG2387|consen 548 CG 549 (585)
T ss_pred Hh
Confidence 43
No 72
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.77 E-value=7e-18 Score=158.03 Aligned_cols=170 Identities=18% Similarity=0.283 Sum_probs=104.0
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhH
Q 014368 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (426)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~ 111 (426)
.++.+++++.|+.++++. +.+++ ..+|+|||||+....+ .+.++++.+
T Consensus 13 ~s~~~al~~~g~~~~~v~---~~~~l----~~~D~lIlPG~g~~~~-------------~~~~L~~~g------------ 60 (192)
T PRK13142 13 SNVKRAIEHLGYEVVVSN---TSKII----DQAETIILPGVGHFKD-------------AMSEIKRLN------------ 60 (192)
T ss_pred HHHHHHHHHcCCCEEEEe---CHHHh----ccCCEEEECCCCCHHH-------------HHHHHHHCC------------
Confidence 356788999999999886 33443 4699999999864211 123443321
Q ss_pred HHHHHHHHHHHcCCCEEEEehHHHHHHHHh-CCccc-cc-chhhhcccCCCCcceeecccCCCCCceEEEEEecCCcccc
Q 014368 112 IELRLAKLCLERNIPYLGICRGSQVLNVAC-GGTLY-QD-IEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHD 188 (426)
Q Consensus 112 ~e~~lir~ale~~iPILGIClG~QlLava~-GG~l~-~~-~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~ 188 (426)
..+.++. ..++|+||||+|||+|+... .|... -. .+.+. .+++...+++|++|+... ...++++
T Consensus 61 -l~~~i~~--~~g~PvlGIClGmQlL~~~~~eg~~~GLgll~~~V-~rf~~~~~vph~GWn~~~---------~~~~l~~ 127 (192)
T PRK13142 61 -LNAILAK--NTDKKMIGICLGMQLMYEHSDEGDASGLGFIPGNI-SRIQTEYPVPHLGWNNLV---------SKHPMLN 127 (192)
T ss_pred -cHHHHHH--hCCCeEEEECHHHHHHhhhcccCCcCccCceeEEE-EECCCCCCCCcccccccC---------CCCcccc
Confidence 1234444 46899999999999999987 22110 00 01111 123344578999887532 1233332
Q ss_pred cccccccccceEEEEecccccchhccCCCeEEEEEeCCC--eEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCC
Q 014368 189 WFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDG--LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDY 266 (426)
Q Consensus 189 ~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG--~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~ 266 (426)
. ..|+|++|+- . .++ .+++++..| .+.+++. .+++|+|||||++.. .+
T Consensus 128 ---~------~~yFVhSy~v---~-~~~--~v~~~~~yg~~~~~~v~~---------~n~~g~QFHPEkS~~-~G----- 177 (192)
T PRK13142 128 ---Q------DVYFVHSYQA---P-MSE--NVIAYAQYGADIPAIVQF---------NNYIGIQFHPEKSGT-YG----- 177 (192)
T ss_pred ---c------EEEEECCCeE---C-CCC--CEEEEEECCCeEEEEEEc---------CCEEEEecCcccCcH-hH-----
Confidence 2 2677766654 2 233 345555444 5666654 469999999999774 34
Q ss_pred CCcHHHHHHHHHH
Q 014368 267 PGCPSAYQEFVKA 279 (426)
Q Consensus 267 ~~~~~lf~~Fv~a 279 (426)
..++++|++-
T Consensus 178 ---~~ll~nf~~~ 187 (192)
T PRK13142 178 ---LQILRQAIQG 187 (192)
T ss_pred ---HHHHHHHHhc
Confidence 5899999763
No 73
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.76 E-value=2.6e-17 Score=157.24 Aligned_cols=198 Identities=22% Similarity=0.300 Sum_probs=126.1
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHH-HCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChh
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIV-GYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~-~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e 90 (426)
+|+|+..+.... .....+++. ..|+.+..++... . .++.+|+||||||.+. ++...
T Consensus 2 ~v~Vl~~~G~n~-------~~d~~~a~~~~~G~~~~~v~~~~--~----~l~~~D~lvipGG~~~-----~d~l~----- 58 (219)
T PRK03619 2 KVAVIVFPGSNC-------DRDMARALRDLLGAEPEYVWHKE--T----DLDGVDAVVLPGGFSY-----GDYLR----- 58 (219)
T ss_pred EEEEEecCCcCh-------HHHHHHHHHhcCCCeEEEEecCc--C----CCCCCCEEEECCCCch-----hhhhc-----
Confidence 678887665421 122366788 7999988776432 1 2457999999999532 11110
Q ss_pred HHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH--hCCcccccchhhhcccCCCCcceeeccc
Q 014368 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA--CGGTLYQDIEKEVSRKCPENQRVVHIDY 168 (426)
Q Consensus 91 ~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava--~GG~l~~~~~~e~g~~~~~~~~v~H~~~ 168 (426)
.. ...+......+++.+.++++|++|||.|+|+|+.+ ++|++.++...++.
T Consensus 59 ---------~~----~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~~n~~~~~~-------------- 111 (219)
T PRK03619 59 ---------CG----AIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGALTRNASLKFI-------------- 111 (219)
T ss_pred ---------cc----hhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEEEcCCCcEE--------------
Confidence 00 00111234567788888999999999999999997 77777665433332
Q ss_pred CCCCCceEEEEEec-CCcccccccccccccceEEEEecccccc--------hhcc-CCCeEEEEEe---CCC---eEEEE
Q 014368 169 DNYDGHRHVVKVVK-DTPLHDWFKDSLEEEKMEIWVNSYHHQG--------VKRL-AQRFVPMAFA---PDG---LIEGF 232 (426)
Q Consensus 169 ~~~~g~~~~V~v~~-~s~L~~~~~~~~~~~~~~~~Vns~H~~~--------V~~L-p~g~~vlA~s---~dG---~Veai 232 (426)
..+..+++.. ++++++.++.. ..+.++..|+.+ ++.+ ..++.++.++ ++| .|+++
T Consensus 112 ----~~~v~v~i~~~~~~~~~~~~~g-----~~~~~~~aH~~~r~~~~~~~~~~l~~~~~~~~~~~~~npngs~~~ia~i 182 (219)
T PRK03619 112 ----CRDVHLRVENNDTPFTSGYEKG-----EVIRIPIAHGEGNYYADEETLKRLEGNGQVVFRYCDENPNGSVNDIAGI 182 (219)
T ss_pred ----EEEEEEEECCCCChhhcCCCCC-----CEEEEEEEcCcccEEECHHHHHHHHhCCcEEEEEcCCCCCCCHHHhccc
Confidence 2366677754 57777777431 145566667665 3444 3556655544 777 56777
Q ss_pred EeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHH
Q 014368 233 YDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (426)
Q Consensus 233 e~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (426)
..++ ++++|+|||||+...+.... ....+||++|++
T Consensus 183 ~~~~-------~~~~g~~~HPE~~~~~~~~~---~~g~~lf~~~v~ 218 (219)
T PRK03619 183 VNEK-------GNVLGMMPHPERAVEPLLGS---TDGLKLFESLLK 218 (219)
T ss_pred CCCC-------CCEEEEeCCCCccccCccCC---CcCHHHHHHHhh
Confidence 6654 78999999999998761110 013699999985
No 74
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.76 E-value=1.2e-17 Score=177.88 Aligned_cols=197 Identities=16% Similarity=0.162 Sum_probs=122.9
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
.++|+|++...- + -.++.++++..|+.+.+++. +++ ++.+|+|||+||.+...
T Consensus 6 ~~~i~iiDyG~G---N-----~~sl~~al~~~G~~v~~v~~---~~~----l~~~D~lIlpG~gs~~~------------ 58 (538)
T PLN02617 6 DSEVTLLDYGAG---N-----VRSVRNAIRHLGFTIKDVQT---PED----ILNADRLIFPGVGAFGS------------ 58 (538)
T ss_pred CCeEEEEECCCC---C-----HHHHHHHHHHCCCeEEEECC---hhh----hccCCEEEECCCCCHHH------------
Confidence 367788765421 1 13457789999999988763 333 35799999999864211
Q ss_pred hHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHh---CCcccccc-h---hhhcccCCCCcc
Q 014368 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC---GGTLYQDI-E---KEVSRKCPENQR 162 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~---GG~l~~~~-~---~e~g~~~~~~~~ 162 (426)
.+.+++. ......++.+++.++|+||||+|||+|+.++ |+...-.. . ..++. .....
T Consensus 59 -~m~~L~~-------------~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~--~~~~~ 122 (538)
T PLN02617 59 -AMDVLNN-------------RGMAEALREYIQNDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDS--SNGLR 122 (538)
T ss_pred -HHHHHHH-------------cCHHHHHHHHHHcCCCEEEECHHHHHHhhhhhhcCCccCcccccceEEECCc--cCCCC
Confidence 1222221 1124567777888999999999999999975 22111000 0 01100 01123
Q ss_pred eeecccCCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCC-eEEEEEeC--CCeEEEEEeCCCCC
Q 014368 163 VVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQR-FVPMAFAP--DGLIEGFYDPDAYN 239 (426)
Q Consensus 163 v~H~~~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g-~~vlA~s~--dG~Veaie~~~~~~ 239 (426)
++|++ |+.+.+..+++|+..++. ..+..+|++.+..+|.+ ..++++++ +++|++|++.
T Consensus 123 vp~iG-------w~~V~~~~~spL~~~l~~--------~~vy~vHSy~v~~~p~~~~~v~a~~~~g~~~IaAI~~g---- 183 (538)
T PLN02617 123 VPHIG-------WNALQITKDSELLDGVGG--------RHVYFVHSYRATPSDENKDWVLATCNYGGEFIASVRKG---- 183 (538)
T ss_pred CCeec-------ceEEEecCCChhHhcCCC--------cEEEEEeEEEEEecCCCCcEEEEEEccCCCcEEEEEeC----
Confidence 55654 567888788888877653 12334566655544443 34455554 4699999863
Q ss_pred CCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 014368 240 PAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIA 282 (426)
Q Consensus 240 ~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~ 282 (426)
+++|+|||||.+. +.+ ..+|++|++.+..
T Consensus 184 -----nI~GVQFHPE~s~-~~G--------~~L~~nFl~~~~~ 212 (538)
T PLN02617 184 -----NVHAVQFHPEKSG-ATG--------LSILRRFLEPKSS 212 (538)
T ss_pred -----CEEEEEcCCccCc-hhH--------HHHHHHHHHhhhh
Confidence 6999999999986 333 5899999987653
No 75
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.73 E-value=2.2e-16 Score=153.06 Aligned_cols=197 Identities=14% Similarity=0.188 Sum_probs=115.2
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChh
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e 90 (426)
.+|||++..... ..++++++++|+.++++.. .++ +..+||||||||.+ ..
T Consensus 2 m~igVLa~qG~~---------~e~~~aL~~lG~ev~~v~~---~~~----L~~~DgLILPGGfs---~~----------- 51 (248)
T PLN02832 2 MAIGVLALQGSF---------NEHIAALRRLGVEAVEVRK---PEQ----LEGVSGLIIPGGES---TT----------- 51 (248)
T ss_pred cEEEEEeCCCch---------HHHHHHHHHCCCcEEEeCC---HHH----hccCCEEEeCCCHH---HH-----------
Confidence 479999866431 2346889999999988864 333 35799999999842 11
Q ss_pred HHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHh-C----Cc-ccccch----h-hhcc---c
Q 014368 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC-G----GT-LYQDIE----K-EVSR---K 156 (426)
Q Consensus 91 ~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~-G----G~-l~~~~~----~-e~g~---~ 156 (426)
+.++. +..-....++.+.+.++|+||||.|||+|+... + +. ...... + .+|. .
T Consensus 52 ----~~~L~---------~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~~~~~~~~~~~~lg~Ldi~v~RN~~g~qv~s 118 (248)
T PLN02832 52 ----MAKLA---------ERHNLFPALREFVKSGKPVWGTCAGLIFLAERAVGQKEGGQELLGGLDCTVHRNFFGSQINS 118 (248)
T ss_pred ----HHHHH---------hhcchHHHHHHHHHcCCCEEEEChhHHHHHHHhcccccCCcceeCCccceEEecccCceeEe
Confidence 11110 000124556666778999999999999999875 2 21 011000 0 2221 1
Q ss_pred CCCCcceeecccCCCC-CceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCC---CeEEEE
Q 014368 157 CPENQRVVHIDYDNYD-GHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPD---GLIEGF 232 (426)
Q Consensus 157 ~~~~~~v~H~~~~~~~-g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~d---G~Veai 232 (426)
+.....++|++|+... ...+.|.+. ..++.. .+ ...+++++|+... +. .-.+.++++. +.+.++
T Consensus 119 fe~~l~ip~~gwn~~~~~~~~~vFir-ap~i~~-~~------~~v~~l~sy~~~~-~~---~~~~~a~~~y~~~~~~~aV 186 (248)
T PLN02832 119 FETELPVPELAASEGGPETFRAVFIR-APAILS-VG------PGVEVLAEYPLPS-EK---ALYSSSTDAEGRDKVIVAV 186 (248)
T ss_pred EEcCCcCCccccccccccccceEEec-CCceEe-CC------CcEEEEEEecccc-cc---cccccccccccCCceEEEE
Confidence 2233467888876431 112222222 222211 11 1255666765433 11 1233455543 467788
Q ss_pred EeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 014368 233 YDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIA 282 (426)
Q Consensus 233 e~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~ 282 (426)
+. .+++|+|||||.+... +++++|++.+..
T Consensus 187 ~q---------gnvlatqFHPEls~d~-----------rih~~Fl~~~~~ 216 (248)
T PLN02832 187 KQ---------GNLLATAFHPELTADT-----------RWHSYFVKMVSE 216 (248)
T ss_pred Ee---------CCEEEEEccCccCCcc-----------HHHHHHHHHHHH
Confidence 76 4699999999998652 899999999865
No 76
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=99.72 E-value=3.4e-17 Score=155.28 Aligned_cols=209 Identities=21% Similarity=0.281 Sum_probs=133.9
Q ss_pred CCcEEEEEccCcCC-----cc-cccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccc
Q 014368 9 ILPRVLIVSRRSVR-----KN-KFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEA 82 (426)
Q Consensus 9 ~~P~igI~~~~~~~-----~~-~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~ 82 (426)
.+|+|||++.+... +| --..||.++|++.+++.||+++++.++...+.+...|+.++|||++||-. .-..|-+
T Consensus 51 ykPvIGIL~hpg~g~~~rl~n~t~~~yIAASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwa-k~~dY~~ 129 (340)
T KOG1559|consen 51 YKPVIGILSHPGDGASGRLKNATGRSYIAASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWA-KRGDYFE 129 (340)
T ss_pred cCceeEEeccCCCCccceeccccCcchhHHHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCccc-ccccHHH
Confidence 58999999975421 23 23679999999999999999999999988888888899999999999921 1111111
Q ss_pred cCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHc-----CCCEEEEehHHHHHHHHhCCcccccchhhhcccC
Q 014368 83 ETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLER-----NIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKC 157 (426)
Q Consensus 83 ~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~-----~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~ 157 (426)
+.......++++ ..||+|||+|+.+|.....-. +++-..++
T Consensus 130 -----------------------------vvkkifnk~le~nDaGehFPvyg~CLGFE~lsmiISqn--rdile~~d--- 175 (340)
T KOG1559|consen 130 -----------------------------VVKKIFNKVLERNDAGEHFPVYGICLGFELLSMIISQN--RDILERFD--- 175 (340)
T ss_pred -----------------------------HHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHhcC--hhHHHhhc---
Confidence 011222334443 389999999999999876411 11111111
Q ss_pred CCCcceeecccCCCCCceEEEEEec----CCccccccccccccc-ceEEEEecccccchh--------ccCCCeEEEEEe
Q 014368 158 PENQRVVHIDYDNYDGHRHVVKVVK----DTPLHDWFKDSLEEE-KMEIWVNSYHHQGVK--------RLAQRFVPMAFA 224 (426)
Q Consensus 158 ~~~~~v~H~~~~~~~g~~~~V~v~~----~s~L~~~~~~~~~~~-~~~~~Vns~H~~~V~--------~Lp~g~~vlA~s 224 (426)
.... ..++..+. .+.+|+-++.++... ....-|.++|.+++. .|...|.++.++
T Consensus 176 -~vd~------------AssLqF~~nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N~~Ls~FFnilTT~ 242 (340)
T KOG1559|consen 176 -AVDV------------ASSLQFVGNVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGNPALSSFFNILTTC 242 (340)
T ss_pred -cccc------------ccceeeecccceeehhHhhCCHHHHHHhccchheeeccccccchhhccCCHHHHHHHhheeee
Confidence 0000 11111111 244565555543221 112345677888774 245568888888
Q ss_pred CCC----eEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHH
Q 014368 225 PDG----LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAY 273 (426)
Q Consensus 225 ~dG----~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf 273 (426)
.|| +|..++... .|+.|+|||||..+...+. .|+|..+...
T Consensus 243 ~D~~~k~fvSTv~~~k-------YPvtgfQWHPEKnafEWgs-s~IpHsedAi 287 (340)
T KOG1559|consen 243 TDGNSKTFVSTVESKK-------YPVTGFQWHPEKNAFEWGS-SDIPHSEDAI 287 (340)
T ss_pred cCCCceEEEEeeccee-------ccceeeeecCccCcccccc-CCCCCChhHH
Confidence 666 677777664 8999999999999887765 4677666544
No 77
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.70 E-value=5.2e-17 Score=150.51 Aligned_cols=164 Identities=19% Similarity=0.234 Sum_probs=111.8
Q ss_pred HHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHH
Q 014368 35 LDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIEL 114 (426)
Q Consensus 35 l~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~ 114 (426)
+..+..-|-..-........=.-.+.|+.+||++|||+.. +.+++. +||.+| +
T Consensus 31 vsllg~ege~wd~frV~~gefP~~~Dl~ky~gfvIsGS~~---dAf~d~---------dWI~KL---------------c 83 (245)
T KOG3179|consen 31 VSLLGDEGEQWDLFRVIDGEFPQEEDLEKYDGFVISGSKH---DAFSDA---------DWIKKL---------------C 83 (245)
T ss_pred HHHhcccCceeEEEEEecCCCCChhhhhhhceEEEeCCcc---cccccc---------hHHHHH---------------H
Confidence 4445555655544432211111122357899999999963 233332 588654 5
Q ss_pred HHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchh-hhcccCCCCcceeecccCCCCCceEEEEEec-CCcccccccc
Q 014368 115 RLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEK-EVSRKCPENQRVVHIDYDNYDGHRHVVKVVK-DTPLHDWFKD 192 (426)
Q Consensus 115 ~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~-e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~-~s~L~~~~~~ 192 (426)
..++.....++||+|||+|||+++.+.||++.++..+ +++ .+...-|+... +..+|.-++.
T Consensus 84 s~~kkld~mkkkvlGICFGHQiiara~Gg~Vgra~KG~~~~-----------------lg~itivk~~~~~~~yFG~~~~ 146 (245)
T KOG3179|consen 84 SFVKKLDFMKKKVLGICFGHQIIARAKGGKVGRAPKGPDLG-----------------LGSITIVKDAEKPEKYFGEIPK 146 (245)
T ss_pred HHHHHHHhhccceEEEeccHHHHHHhhCCccccCCCCCccc-----------------ccceEEEEecccchhhcccchh
Confidence 6778878888999999999999999999999887531 111 11122233221 2223332222
Q ss_pred cccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcccCCccC
Q 014368 193 SLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMR 257 (426)
Q Consensus 193 ~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~ 257 (426)
.+.++..|++.|-.+|++++++|+++++.+|++..++ .++++|.|||+..
T Consensus 147 -------~l~IikcHqDevle~PE~a~llasSe~ceve~fs~~~--------~~l~fQGHPEyn~ 196 (245)
T KOG3179|consen 147 -------SLNIIKCHQDEVLELPEGAELLASSEKCEVEMFSIED--------HLLCFQGHPEYNK 196 (245)
T ss_pred -------hhhHHhhcccceecCCchhhhhccccccceEEEEecc--------eEEEecCCchhhH
Confidence 5678889999999999999999999999999999874 6999999999864
No 78
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.7e-16 Score=163.68 Aligned_cols=198 Identities=22% Similarity=0.385 Sum_probs=127.0
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHH-CCCEEE-EEcCCCChhhhhhhcCC---CCEEEECCCCCCCCCcccccC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVG-YGAVPA-IVPRVSGVHMLLDSFEP---IHGVLLCEGEDIDPSLYEAET 84 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~-~Ga~~v-ivp~~~~~~~l~~~le~---~DGVILsGG~didp~~y~~~~ 84 (426)
+-+++.++++++++-+.++. |.. .|.-+| ++.++..-++.-+.+.+ +|+||+..||+ +| .+.++.
T Consensus 14 rl~~LlID~YDSyTfNiy~l--------l~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG-~P-~~a~d~ 83 (767)
T KOG1224|consen 14 RLRTLLIDNYDSYTFNIYQL--------LSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPG-SP-MCAADI 83 (767)
T ss_pred heeEEEEecccchhhhHHHH--------HHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCC-CC-CcHHHH
Confidence 34577778888776655544 333 343334 55554433344444444 99999999986 45 221111
Q ss_pred CCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCccee
Q 014368 85 SNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVV 164 (426)
Q Consensus 85 ~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~ 164 (426)
.+..++...| +++||||||+|||.|+.+.|+.+.. .+. +.
T Consensus 84 --------------------------gI~~rl~~~~--~~iPilGICLGfQal~l~hGA~v~~-~n~-----------p~ 123 (767)
T KOG1224|consen 84 --------------------------GICLRLLLEC--RDIPILGICLGFQALGLVHGAHVVH-ANE-----------PV 123 (767)
T ss_pred --------------------------HHHHHHHHhc--CCCceeeeehhhHhHhhhcccceec-CCC-----------cc
Confidence 2223344433 4799999999999999999998762 211 12
Q ss_pred ecccCCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEE-e-CC-C-eEEEEEeCCCCCC
Q 014368 165 HIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAF-A-PD-G-LIEGFYDPDAYNP 240 (426)
Q Consensus 165 H~~~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~-s-~d-G-~Veaie~~~~~~~ 240 (426)
| |....+... ++.+|..++.. ....|.+..||+..+..+|-+.....| . +| | +++++.+..
T Consensus 124 H-------Grvs~i~~~-~~~~f~gi~sg---~~~~fK~~RYHSL~in~~pid~l~il~t~~ddng~ilMsi~~~~---- 188 (767)
T KOG1224|consen 124 H-------GRVSGIEHD-GNILFSGIPSG---RNSDFKVVRYHSLIINSLPIDLLPILWTIYDDNGHILMSIMHSS---- 188 (767)
T ss_pred c-------ceeeeEEec-CcEEEccCCCC---CcccceeEEeEEEEecCCchhhhcceeEeecCCceEEEEeeccC----
Confidence 3 334445443 34444443320 012678889999999888877555444 3 33 4 789999986
Q ss_pred CCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 014368 241 AEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAY 283 (426)
Q Consensus 241 ~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~~ 283 (426)
.|.+|+|||||...+..+ ..||+||++....+
T Consensus 189 ---fPhfG~qyHPES~~s~~g--------~~lfkNFl~lt~~~ 220 (767)
T KOG1224|consen 189 ---FPHFGLQYHPESIASTYG--------SQLFKNFLDLTVNY 220 (767)
T ss_pred ---CCccceeeChHHhhhhhh--------HHHHHHHHHhhccC
Confidence 889999999999988776 49999999976443
No 79
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.59 E-value=2e-14 Score=143.14 Aligned_cols=138 Identities=19% Similarity=0.118 Sum_probs=96.5
Q ss_pred CCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHh
Q 014368 62 EPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (426)
Q Consensus 62 e~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~ 141 (426)
..+||+||||++- +-..|++.+.| ++ ...+++++.+..+|+||||+|+|+++.++
T Consensus 98 ~~~DG~IITGAp~-e~~~fedv~YW------~E------------------l~~i~~w~~~~~~s~LgICwGaQa~a~al 152 (302)
T PRK05368 98 EKFDGLIITGAPV-EQLPFEDVDYW------DE------------------LKEILDWAKTHVTSTLFICWAAQAALYHL 152 (302)
T ss_pred CCCCEEEEcCCCC-CCccCCCCchH------HH------------------HHHHHHHHHHcCCCEEEEcHHHHHHHHHc
Confidence 4799999999972 11234444321 11 23566777778999999999999999999
Q ss_pred CCcccccch-hhhcccCCCCcceeecccCCCCCceEEEEE-ecCCcccccccccccccceEEEEecccccchh----ccC
Q 014368 142 GGTLYQDIE-KEVSRKCPENQRVVHIDYDNYDGHRHVVKV-VKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK----RLA 215 (426)
Q Consensus 142 GG~l~~~~~-~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v-~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~----~Lp 215 (426)
||....... ..+| .....+ .+.++|++.+++ .|.+...|+..|. .++
T Consensus 153 gGi~k~~~~~K~~G--------------------v~~~~~~~~~~pL~~g~~d-------~F~~phSr~~~V~~~~i~~~ 205 (302)
T PRK05368 153 YGIPKYTLPEKLSG--------------------VFEHRVLDPHHPLLRGFDD-------SFLVPHSRYTEVREEDIRAA 205 (302)
T ss_pred CCCccCCCCCceeE--------------------EEEEEEcCCCChhhcCCCC-------ccccceeehhhccHHHhccC
Confidence 996221111 2222 222222 235678888776 5677777777773 368
Q ss_pred CCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 014368 216 QRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (426)
Q Consensus 216 ~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (426)
++++++|.|+.+.++++..++ ..++++|+|||+...
T Consensus 206 ~~l~vLA~S~~~gv~~~~~~~-------~r~~~vQgHPEYd~~ 241 (302)
T PRK05368 206 TGLEILAESEEAGVYLFASKD-------KREVFVTGHPEYDAD 241 (302)
T ss_pred CCCEEEecCCCCCeEEEEeCC-------CCEEEEECCCCCCHH
Confidence 999999999999899998864 579999999998653
No 80
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.53 E-value=3.8e-13 Score=131.84 Aligned_cols=224 Identities=18% Similarity=0.231 Sum_probs=124.0
Q ss_pred CCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCC-CCCcccccCCCC
Q 014368 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDI-DPSLYEAETSNL 87 (426)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~di-dp~~y~~~~~~~ 87 (426)
++++|+|+.-+..... ...+++++.+|+.+.+++.... ......++.+|||||+||.+. |...++..
T Consensus 2 ~~~kvaVl~~pG~n~d-------~e~~~Al~~aG~~v~~v~~~~~-~~~~~~l~~~DgLvipGGfs~gD~l~~g~~---- 69 (261)
T PRK01175 2 ESIRVAVLRMEGTNCE-------DETVKAFRRLGVEPEYVHINDL-AAERKSVSDYDCLVIPGGFSAGDYIRAGAI---- 69 (261)
T ss_pred CCCEEEEEeCCCCCCH-------HHHHHHHHHCCCcEEEEeeccc-cccccchhhCCEEEECCCCCcccccccchh----
Confidence 4578999987654322 1336789899999998875321 112223568999999999531 21111110
Q ss_pred ChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecc
Q 014368 88 SPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHID 167 (426)
Q Consensus 88 ~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~ 167 (426)
|..+ .+ ....+.++.+.++++|+||||.|+|+|+.+ | +.+... .... +....+.+..
T Consensus 70 ------~~~~----------l~-~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~-G--lLpg~~-~~~~--~~~~~L~~N~ 126 (261)
T PRK01175 70 ------FAAR----------LK-AVLRKDIEEFIDEGYPIIGICNGFQVLVEL-G--LLPGFD-EIAE--KPEMALTVNE 126 (261)
T ss_pred ------hHHH----------HH-HHHHHHHHHHHHCCCeEEEECHHHHHHHHC-C--CCCCCC-cccc--CCcceEeecC
Confidence 0000 00 112357888889999999999999999883 3 222100 0000 0011222322
Q ss_pred cCCCCCceEEEEEec-CCcccccccccccccceEEEEecccccc---------hhcc-CCCeEEEEE------------e
Q 014368 168 YDNYDGHRHVVKVVK-DTPLHDWFKDSLEEEKMEIWVNSYHHQG---------VKRL-AQRFVPMAF------------A 224 (426)
Q Consensus 168 ~~~~~g~~~~V~v~~-~s~L~~~~~~~~~~~~~~~~Vns~H~~~---------V~~L-p~g~~vlA~------------s 224 (426)
...+...|..+++.. .|++...+... .+.+...|+++ +++| ..+..++-+ +
T Consensus 127 s~~f~~~~~~~~v~~~~s~~~~~~~~~------~~~~piah~eG~~~~~~~~~l~~l~~~~~i~~~Y~d~~g~~~~~p~N 200 (261)
T PRK01175 127 SNRFECRPTYLKKENRKCIFTKLLKKD------VFQVPVAHAEGRVVFSEEEILERLIENDQIVFRYVDENGNYAGYPWN 200 (261)
T ss_pred CCCeEEeeeEEEECCCCChhHhccCCC------EEEEeeEcCCcceEeCCHHHHHHHHHCCcEEEEEeCCCCCCCCCCCC
Confidence 233334566677654 56666555432 24344344432 1122 123333322 4
Q ss_pred CCC---eEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCC-----CCCCCcHHHHHHHHHHH
Q 014368 225 PDG---LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDE-----FDYPGCPSAYQEFVKAV 280 (426)
Q Consensus 225 ~dG---~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~-----~d~~~~~~lf~~Fv~av 280 (426)
++| .|+||..++ .+++|+..||||...+..-. .--.....+|+++++..
T Consensus 201 PNGs~~~IAGi~~~~-------G~vlglMpHPEr~~~~~~~~~~~~~~~~~~g~~~f~~~~~~~ 257 (261)
T PRK01175 201 PNGSIYNIAGITNEK-------GNVIGLMPHPERAFYGYQHPYWEKEEDYGDGKIFFDSLINYL 257 (261)
T ss_pred CCCChhhcceeECCC-------CCEEEEcCCHHHhhchhhccccccccCCCchHHHHHHHHHHH
Confidence 555 689999887 78999999999987654100 00012368899987643
No 81
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.46 E-value=1.3e-12 Score=126.30 Aligned_cols=177 Identities=21% Similarity=0.254 Sum_probs=104.8
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHH
Q 014368 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (426)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~ 112 (426)
.++++++.+|+.+++++....... ...++.+|||||+||.. |++... ...+...+..
T Consensus 14 ~~~~al~~aG~~v~~v~~~~~~~~-~~~l~~~d~liipGG~~-----~~d~l~----------------~~~~~~~~~~- 70 (238)
T cd01740 14 DMAYAFELAGFEAEDVWHNDLLAG-RKDLDDYDGVVLPGGFS-----YGDYLR----------------AGAIAAASPL- 70 (238)
T ss_pred HHHHHHHHcCCCEEEEeccCCccc-cCCHhhCCEEEECCCCC-----cccccc----------------cccccccChh-
Confidence 467889999999999986432111 12356799999999953 332211 0000011111
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHH--hCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEec-CCccccc
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVA--CGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVK-DTPLHDW 189 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava--~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~-~s~L~~~ 189 (426)
+..+++.+.+.++||||||.|+|+|+.+ ++|++......++... +.+.+..+++.. ++.+...
T Consensus 71 ~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~~~~~~~~~~~~--------------~~~~~v~~~v~~~~si~t~~ 136 (238)
T cd01740 71 LMEEVKEFAERGGLVLGICNGFQILVELGLLPGALIRNKGLKFICR--------------WQNRFVTLRVENNDSPFTKG 136 (238)
T ss_pred HHHHHHHHHhCCCeEEEECcHHHHHHHcCCCccccccCCCCceecc--------------ccCceEEEEEcCCCCceecC
Confidence 5678888899999999999999999997 7777654432222100 001134444433 3455544
Q ss_pred c-cccccccceEEEEecccccc--------hhccC-CCeEE------------EEEeCCC---eEEEEEeCCCCCCCCCC
Q 014368 190 F-KDSLEEEKMEIWVNSYHHQG--------VKRLA-QRFVP------------MAFAPDG---LIEGFYDPDAYNPAEGK 244 (426)
Q Consensus 190 ~-~~~~~~~~~~~~Vns~H~~~--------V~~Lp-~g~~v------------lA~s~dG---~Veaie~~~~~~~~~~~ 244 (426)
+ .. ..+.+...|+++ +.+|- .+-.+ --++++| .|+||..++ .
T Consensus 137 ~~~g------~~l~~~vaHgeG~~~~~~~~~~~l~~~~~i~~y~~~~~~~~~~yp~NPnGs~~~iAgi~~~~-------G 203 (238)
T cd01740 137 YMEG------EVLRIPVAHGEGRFYADDETLAELEENGQIAQYVDDDGNVTERYPANPNGSLDGIAGICNED-------G 203 (238)
T ss_pred CCCC------CEEEEEeECCceeeEcCHHHHHHHHHCCCEEEEEcCCCCccccCCCCCCCChhcceEEEcCC-------C
Confidence 2 11 145566666653 11111 11111 0024566 599999987 7
Q ss_pred cEEEEcccCCccCCC
Q 014368 245 FIMGLQFHPERMRRP 259 (426)
Q Consensus 245 ~i~GvQFHPE~~~~~ 259 (426)
+++|+..||||...+
T Consensus 204 rvlglMphPer~~~~ 218 (238)
T cd01740 204 RVLGMMPHPERAVEP 218 (238)
T ss_pred CEEEEcCChHHcccc
Confidence 899999999998765
No 82
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.44 E-value=1.9e-12 Score=120.01 Aligned_cols=175 Identities=16% Similarity=0.155 Sum_probs=99.5
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChh
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e 90 (426)
.+|||++-... +. .|.+++++.|+.++++. +++++ +.+|+||||||+.-.
T Consensus 3 ~~igVLalqG~--------~~-Eh~~al~~lG~~v~~v~---~~~~l----~~~D~LILPGG~~t~-------------- 52 (179)
T PRK13526 3 QKVGVLAIQGG--------YQ-KHADMFKSLGVEVKLVK---FNNDF----DSIDRLVIPGGESTT-------------- 52 (179)
T ss_pred cEEEEEECCcc--------HH-HHHHHHHHcCCcEEEEC---CHHHH----hCCCEEEECCChHHH--------------
Confidence 57999986543 12 27889999999988776 34443 569999999985210
Q ss_pred HHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCC
Q 014368 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDN 170 (426)
Q Consensus 91 ~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (426)
..+ ..++......++...+ ++|++|||.|+|+|+...++ + .. ++ ..+..+.+..
T Consensus 53 ---~~~----------ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~~s~~-L-g~----id------g~V~Rn~~Gr 106 (179)
T PRK13526 53 ---LLN----------LLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSKGEGY-L-NL----LD------LEVQRNAYGR 106 (179)
T ss_pred ---HHH----------HhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHccCCC-C-CC----cc------EEEEEcCCCC
Confidence 000 0011112456666554 78999999999999984211 0 00 00 0111111110
Q ss_pred CCCceEEEEEe-cCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEE
Q 014368 171 YDGHRHVVKVV-KDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGL 249 (426)
Q Consensus 171 ~~g~~~~V~v~-~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~Gv 249 (426)
... .....+. ++. .+...-.-...|.+.+++.+++|+-++ .+-+++. .+++++
T Consensus 107 q~~-sf~~~~~~~~~---------------~~~~vFiRAP~i~~~~~~v~vla~~~~-~~v~v~q---------~~~l~~ 160 (179)
T PRK13526 107 QVD-SFVADISFNDK---------------NITGVFIRAPKFIVVGNQVDILSKYQN-SPVLLRQ---------ANILVS 160 (179)
T ss_pred ccc-eeeeecCcCCc---------------eEEEEEEcCceEeEcCCCcEEEEEECC-EEEEEEE---------CCEEEE
Confidence 000 0000010 010 122222234456667889999998864 4556665 459999
Q ss_pred cccCCccCCCCCCCCCCCCcHHHHHHHHH
Q 014368 250 QFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (426)
Q Consensus 250 QFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (426)
-||||.+.. .++.+.|++
T Consensus 161 ~FHPElt~d-----------~r~h~~f~~ 178 (179)
T PRK13526 161 SFHPELTQD-----------PTVHEYFLA 178 (179)
T ss_pred EeCCccCCC-----------chHHHHHhc
Confidence 999998643 267777864
No 83
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.42 E-value=7.1e-12 Score=118.88 Aligned_cols=201 Identities=21% Similarity=0.254 Sum_probs=117.9
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcC-CCCEEEECCCCCCCCCcccccCCCCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFE-PIHGVLLCEGEDIDPSLYEAETSNLS 88 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le-~~DGVILsGG~didp~~y~~~~~~~~ 88 (426)
+|+|.|+--+..... ++. ..++..+|+.++.|..... . +. .+|||++||| ..|++....
T Consensus 2 ~~kvaVi~fpGtN~d--~d~-----~~A~~~aG~~~~~V~~~d~--~----~~~~~d~vv~pGG-----FSyGDyLr~-- 61 (231)
T COG0047 2 RPKVAVLRFPGTNCD--YDM-----AAAFERAGFEAEDVWHSDL--L----LGRDFDGVVLPGG-----FSYGDYLRA-- 61 (231)
T ss_pred CceEEEEEcCCcCch--HHH-----HHHHHHcCCCceEEEeeec--c----cCCCccEEEEcCC-----CCcccccCc--
Confidence 689999876654222 122 3457789999998875322 1 12 5999999999 457765421
Q ss_pred hhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH--hCCcccccchhhhcccCCCCcceeec
Q 014368 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA--CGGTLYQDIEKEVSRKCPENQRVVHI 166 (426)
Q Consensus 89 ~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava--~GG~l~~~~~~e~g~~~~~~~~v~H~ 166 (426)
=||.+. .-.+.-++.+.+.++|+||||-|+|+|..+ +.|.+.++....|
T Consensus 62 ----Gaiaa~------------~~v~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPGal~~N~s~~F------------- 112 (231)
T COG0047 62 ----GAIAAI------------APVMDEVREFAEKGKPVLGICNGFQILSEAGLLPGALTRNESLRF------------- 112 (231)
T ss_pred ----chHHhh------------HHHHHHHHHHHHCCCeEEEEcchhHHHHHcCcCCcceecCCCCce-------------
Confidence 122211 223455677777999999999999999953 2344444332111
Q ss_pred ccCCCCCceEEEEEec-CCcccccccccccccceEEEEecccccc--------hhccCCCeEEEE------------EeC
Q 014368 167 DYDNYDGHRHVVKVVK-DTPLHDWFKDSLEEEKMEIWVNSYHHQG--------VKRLAQRFVPMA------------FAP 225 (426)
Q Consensus 167 ~~~~~~g~~~~V~v~~-~s~L~~~~~~~~~~~~~~~~Vns~H~~~--------V~~Lp~g~~vlA------------~s~ 225 (426)
...+..+++.. +|++...+... ..+.+.-.|+.+ +.+|-.+-.|+. +++
T Consensus 113 -----~cr~v~l~V~~~~t~ft~~~~~g-----~~i~ipVAHgEGr~~~~~~~l~~l~~ngqvvfrY~d~~G~~~~~~NP 182 (231)
T COG0047 113 -----ECRWVYLRVENNNTPFTSGYEGG-----EVIPIPVAHGEGRYYADDETLAELEENGQVVFRYVDNNGETEEYANP 182 (231)
T ss_pred -----EEEEEEEEEecCCCHHHHhcCCC-----ceEEEEEeecceeEEccHHHHHHHhhCCeEEEEEecCCCceeeeeCC
Confidence 12255566554 46666666441 134444455533 122222222222 345
Q ss_pred CC---eEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHH
Q 014368 226 DG---LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKA 279 (426)
Q Consensus 226 dG---~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a 279 (426)
+| -|++|..++ .+++|+.-||||.....-..-| ..++|++.++.
T Consensus 183 NGS~~~IaGI~n~~-------G~V~gmMPHPERa~~~~~g~~D---g~~lF~s~~~~ 229 (231)
T COG0047 183 NGSVNGIAGITNED-------GNVLGMMPHPERASESLLGGED---GLRLFRSARKY 229 (231)
T ss_pred CCChhhceeEEcCC-------CCEEEecCCchhhhhcccCCch---HHHHHHHHHHh
Confidence 66 688998886 7899999999998753221111 35677766654
No 84
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.35 E-value=3.2e-12 Score=126.67 Aligned_cols=178 Identities=18% Similarity=0.248 Sum_probs=111.9
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHH
Q 014368 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (426)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~ 112 (426)
+.-.+|+..|..+-.|.. +.+| ...|-+||||-+++.|.+- ...|..+
T Consensus 16 si~nal~hlg~~i~~v~~---P~DI----~~a~rLIfPGVGnfg~~~D-------------------------~L~~~Gf 63 (541)
T KOG0623|consen 16 SIRNALRHLGFSIKDVQT---PGDI----LNADRLIFPGVGNFGPAMD-------------------------VLNRTGF 63 (541)
T ss_pred HHHHHHHhcCceeeeccC---chhh----ccCceEeecCcccchHHHH-------------------------HHhhhhh
Confidence 345678889988877763 3333 3589999999765544320 0112233
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHHh-------CCcccccchhhhcccCC-CCcceeecccCCCCCceEEEEEecCC
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVAC-------GGTLYQDIEKEVSRKCP-ENQRVVHIDYDNYDGHRHVVKVVKDT 184 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava~-------GG~l~~~~~~e~g~~~~-~~~~v~H~~~~~~~g~~~~V~v~~~s 184 (426)
...++.-++.++|++|||.|.|+|.... |-.+...+-. +++ ....++|++|+. +.+-.++
T Consensus 64 -~eplr~YiesgkPfmgicvGlQaLF~gSvE~p~skGLgvipg~v~----RFD~s~k~VPhIGWNs-------c~v~sd~ 131 (541)
T KOG0623|consen 64 -AEPLRKYIESGKPFMGICVGLQALFDGSVENPPSKGLGVIPGIVG----RFDASAKIVPHIGWNS-------CQVGSDS 131 (541)
T ss_pred -HHHHHHHHhcCCCeEeehhhHHHHhcccccCCCcCccccccccee----cccCCCCcCCcccccc-------cccCCcc
Confidence 3455566789999999999999996522 1111121111 232 234689998765 4455666
Q ss_pred cccccccccccccceEEEEecccccchh-ccC-CCeEEEEEeCCC---eEEEEEeCCCCCCCCCCcEEEEcccCCccCCC
Q 014368 185 PLHDWFKDSLEEEKMEIWVNSYHHQGVK-RLA-QRFVPMAFAPDG---LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRP 259 (426)
Q Consensus 185 ~L~~~~~~~~~~~~~~~~Vns~H~~~V~-~Lp-~g~~vlA~s~dG---~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~ 259 (426)
.+|...+. ++.|+|+||-.-... .++ ++|++ |++..| +|.+|... +++++|||||.+...
T Consensus 132 effg~~p~-----~~~YFVHSyl~~ek~~~len~~wki-at~kYG~E~Fi~ai~kn---------N~~AtQFHPEKSG~a 196 (541)
T KOG0623|consen 132 EFFGDVPN-----RHVYFVHSYLNREKPKSLENKDWKI-ATCKYGSESFISAIRKN---------NVHATQFHPEKSGEA 196 (541)
T ss_pred cccccCCC-----ceEEEEeeecccccccCCCCCCceE-eeeccCcHHHHHHHhcC---------ceeeEecccccccch
Confidence 66655554 467888887433332 233 45774 666555 78888754 599999999998764
Q ss_pred CCCCCCCCCcHHHHHHHHH
Q 014368 260 DSDEFDYPGCPSAYQEFVK 278 (426)
Q Consensus 260 ~~~~~d~~~~~~lf~~Fv~ 278 (426)
+ ...+++|+.
T Consensus 197 -G--------L~vl~~FL~ 206 (541)
T KOG0623|consen 197 -G--------LSVLRRFLH 206 (541)
T ss_pred -h--------HHHHHHHHh
Confidence 2 367788876
No 85
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=99.30 E-value=2.6e-11 Score=112.48 Aligned_cols=167 Identities=18% Similarity=0.210 Sum_probs=94.4
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhH
Q 014368 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (426)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~ 111 (426)
..|++.+.+.|+.++.|.. .+++ +.+||||||||++ ..|.++ .+..
T Consensus 9 ~EH~~~l~~lg~~~~~Vr~---~~dL----~~~dgLIiPGGES------------------Tti~~l---------l~~~ 54 (188)
T PF01174_consen 9 REHIRMLERLGAEVVEVRT---PEDL----EGLDGLIIPGGES------------------TTIGKL---------LRRY 54 (188)
T ss_dssp HHHHHHHHHTTSEEEEE-S---GGGG----TT-SEEEE-SS-H------------------HHHHHH---------HHHT
T ss_pred HHHHHHHHHcCCCeEEeCC---HHHH----ccCCEEEECCCcH------------------HHHHHH---------HHHc
Confidence 3588999999999998874 3443 5699999999963 112211 1122
Q ss_pred HHHHHHHHHHHcC-CCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEecCCcccccc
Q 014368 112 IELRLAKLCLERN-IPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWF 190 (426)
Q Consensus 112 ~e~~lir~ale~~-iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~ 190 (426)
-....++.....+ +|+||+|-|+-+|+....+. .+. .+ +..+|.+..|. |
T Consensus 55 gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~v~~~-~q~---~L--------------------g~ldi~V~RNa-----f 105 (188)
T PF01174_consen 55 GLFEPLREFIRSGSKPVWGTCAGLILLAKEVEGQ-GQP---LL--------------------GLLDITVRRNA-----F 105 (188)
T ss_dssp THHHHHHHHHHTT--EEEEETHHHHHHEEEECSS-CCT---SS----------------------EEEEEETTT-----T
T ss_pred CCHHHHHHHHHcCCCceeehhHHHHHhhhhhhhc-ccc---cc--------------------cceeEEEEccc-----c
Confidence 2355677777777 99999999999998654332 000 01 12334443331 1
Q ss_pred cccccc--------cc-eEEEEecccccchhccC--CCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCCC
Q 014368 191 KDSLEE--------EK-MEIWVNSYHHQGVKRLA--QRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRP 259 (426)
Q Consensus 191 ~~~~~~--------~~-~~~~Vns~H~~~V~~Lp--~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~ 259 (426)
|++... .. ..|...-.....|.++. ++.++++..++ .|-+++. .+++++-||||.+..
T Consensus 106 GrQ~~SFe~~l~i~~~~~~~~avFIRAP~I~~v~~~~~v~vla~~~g-~iVav~q---------gn~latsFHPELT~D- 174 (188)
T PF01174_consen 106 GRQLDSFEADLDIPGLGEPFPAVFIRAPVIEEVGSPEGVEVLAELDG-KIVAVRQ---------GNILATSFHPELTDD- 174 (188)
T ss_dssp CSSSCEEEEEEEETTTESEEEEEESS--EEEEE--TTTEEEEEEETT-EEEEEEE---------TTEEEESS-GGGSST-
T ss_pred ccchhcEEEEEEeecCCCcEEEEEcCCcEEEEeeccccccccccccc-ceEEEEe---------cCEEEEEeCCcccCc-
Confidence 111000 00 12333333444555555 67888888765 4445554 469999999998754
Q ss_pred CCCCCCCCCcHHHHHHHHHHHH
Q 014368 260 DSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 260 ~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
+. ++.+.|++.|.
T Consensus 175 -~~--------r~H~yFl~~v~ 187 (188)
T PF01174_consen 175 -DT--------RIHEYFLEMVV 187 (188)
T ss_dssp -HC--------HHHHHHHHHHC
T ss_pred -hh--------HHHHHHHHHhh
Confidence 11 78899998774
No 86
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=99.28 E-value=8.6e-11 Score=108.26 Aligned_cols=183 Identities=19% Similarity=0.220 Sum_probs=106.2
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCC-CEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChh
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYG-AVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~G-a~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e 90 (426)
+|||+.-... -+.|+++++++| +.++.+.. +++ ++.+||||||||++
T Consensus 2 ~IGVLalQG~---------v~EH~~~l~~~~~~e~~~Vk~---~~d----L~~~d~LIiPGGES---------------- 49 (194)
T COG0311 2 KIGVLALQGA---------VEEHLEALEKAGGAEVVEVKR---PED----LEGVDGLIIPGGES---------------- 49 (194)
T ss_pred eEEEEEeccc---------HHHHHHHHHhhcCCceEEEcC---HHH----hccCcEEEecCccH----------------
Confidence 6788763322 246899999995 99998874 333 45699999999963
Q ss_pred HHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCC
Q 014368 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDN 170 (426)
Q Consensus 91 ~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (426)
..|.++ .++...+..++.....++|+||+|-|+-+|+...-+. ... ++.
T Consensus 50 --TTi~rL---------~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLakei~~~--~~~--------------~~L---- 98 (194)
T COG0311 50 --TTIGRL---------LKRYGLLEPLREFIADGLPVFGTCAGLILLAKEILDG--PEQ--------------PLL---- 98 (194)
T ss_pred --HHHHHH---------HHHcCcHHHHHHHHHcCCceEEechhhhhhhhhhcCC--CCC--------------ccc----
Confidence 123322 1222335667777888999999999999999755320 000 010
Q ss_pred CCCceEEEEEecCC--cccccccccc-cc---cceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCC
Q 014368 171 YDGHRHVVKVVKDT--PLHDWFKDSL-EE---EKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGK 244 (426)
Q Consensus 171 ~~g~~~~V~v~~~s--~L~~~~~~~~-~~---~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~ 244 (426)
+...|++..|. +-.+.|...+ +. ....+...-.....+.++.++.+++|+-++-+| +++. .
T Consensus 99 ---g~mdi~V~RNAfGRQ~dSFe~~~di~~~~~~~~~~avFIRAP~I~~vg~~V~vLa~l~~~iV-av~q---------g 165 (194)
T COG0311 99 ---GLLDVTVRRNAFGRQVDSFETELDIEGFGLPFPFPAVFIRAPVIEEVGDGVEVLATLDGRIV-AVKQ---------G 165 (194)
T ss_pred ---ceEEEEEEccccccccccceeeEEeecccCCCcceEEEEEcceeehhcCcceEeeeeCCEEE-EEEe---------C
Confidence 12333333321 0000010000 00 000111112234455666678999998866444 4443 4
Q ss_pred cEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014368 245 FIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 245 ~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
+++++-||||.+... ++.+.|++.+.
T Consensus 166 n~LatsFHPELT~D~-----------r~Heyf~~~v~ 191 (194)
T COG0311 166 NILATSFHPELTDDT-----------RLHEYFLDMVL 191 (194)
T ss_pred CEEEEecCccccCCc-----------cHHHHHHHHhh
Confidence 699999999987542 67677777665
No 87
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=99.22 E-value=2.8e-10 Score=111.52 Aligned_cols=226 Identities=21% Similarity=0.231 Sum_probs=106.8
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
||+|+|+.-+.... ...-+.++..+|+.+.+|.... ...-...++.+|+|+|+||- .|++.... .
T Consensus 1 kpkV~Vl~~pGtNc-------e~e~~~A~~~aG~~~~~v~~~d-l~~~~~~l~~~~~lvipGGF-----S~gD~l~s--g 65 (259)
T PF13507_consen 1 KPKVAVLRFPGTNC-------ERETAAAFENAGFEPEIVHIND-LLSGESDLDDFDGLVIPGGF-----SYGDYLRS--G 65 (259)
T ss_dssp --EEEEEE-TTEEE-------HHHHHHHHHCTT-EEEEEECCH-HHTTS--GCC-SEEEE-EE------GGGGTTST--T
T ss_pred CCEEEEEECCCCCC-------HHHHHHHHHHcCCCceEEEEEe-cccccCchhhCcEEEECCcc-----CccccchH--H
Confidence 68999998765422 2233567899999999887532 11112356789999999993 46654421 0
Q ss_pred hHHHHHHhhcCCCccccchhhHHHHHHHHHHHHc-CCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeeccc
Q 014368 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLER-NIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDY 168 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~-~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~ 168 (426)
. + |..++. .+......++..+++ +.|+||||-|+|+|... | +.+....... .....+.+...
T Consensus 66 ~-~-~a~~~~---------~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~-G--llp~~~~~~~---~~~~~L~~N~s 128 (259)
T PF13507_consen 66 A-I-AAARLL---------FNSPLMDAIREFLERPGGFVLGICNGFQILVEL-G--LLPGGEIKDS---EQSPALTPNAS 128 (259)
T ss_dssp H-H-HHHHHC---------CSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCC-C--CSTT---------TT--EEE--TT
T ss_pred H-H-HHHHhh---------ccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHh-C--cCCCcccccc---CCCcEEcCCCC
Confidence 0 0 111110 000124566777777 99999999999999763 1 1111000000 01112233333
Q ss_pred CCCCCceEEEEEecCCcccccccccccccceEEEEecccccc---------hhccC-CCeEEEEEe-------------C
Q 014368 169 DNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQG---------VKRLA-QRFVPMAFA-------------P 225 (426)
Q Consensus 169 ~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~---------V~~Lp-~g~~vlA~s-------------~ 225 (426)
..+...|..+.+...|+..-.-+-+ .+.+...|+++ .+.|- .+..++-+. +
T Consensus 129 ~~fe~rwv~~~v~~~s~~~~~~~~~------~~~lPiahgeG~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~a~~yP~NP 202 (259)
T PF13507_consen 129 GRFESRWVNLVVNENSPSIFLRGLE------GIVLPIAHGEGRFYARDEATLEELEENGQIAFRYVDEEGNPAQEYPRNP 202 (259)
T ss_dssp SS-EEEEEEEEE--SSTTCCCTTTT------CEEEEEEESS-EEE-SSHHHHHHHCCTTEEEEEECSTTSSB--STTTSS
T ss_pred CCeEEEEEEEEEecCCcceecCCCC------EEEEEEecCcceeecCCHHHHHHHHhcCeEEEEEecCCCCcccCCCCCC
Confidence 3333456666554455432211110 22222333322 11222 233333332 3
Q ss_pred CC---eEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCC-CCC-----CCcHHHHHHHHHHH
Q 014368 226 DG---LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDE-FDY-----PGCPSAYQEFVKAV 280 (426)
Q Consensus 226 dG---~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~-~d~-----~~~~~lf~~Fv~av 280 (426)
+| .|+||..++ ..++|+..|||+...+..-. ..- .....+|++-++.|
T Consensus 203 NGS~~~IAGics~~-------GrvlglMpHPEr~~~~~~~~~~p~~~~~~s~~~~~F~n~~~w~ 259 (259)
T PF13507_consen 203 NGSVNNIAGICSPD-------GRVLGLMPHPERAFEPWQWPHWPREKWQESPWLRIFQNAVEWF 259 (259)
T ss_dssp S--GGGEEEEE-TT-------SSEEEESSBCCGTTCCCCSS-S--TT--B-TTHHHHHHHHH--
T ss_pred CCCccceeEEEcCC-------CCEEEEcCChHHhCchhhcCCCCccccCCChHHHHHHHHhhcC
Confidence 34 699999987 78999999999987654321 110 22456777766543
No 88
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.13 E-value=1.7e-09 Score=124.43 Aligned_cols=226 Identities=20% Similarity=0.164 Sum_probs=126.4
Q ss_pred CCCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC--------ChhhhhhhcCCCCEEEECCCCCCCCCc
Q 014368 8 VILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS--------GVHMLLDSFEPIHGVLLCEGEDIDPSL 79 (426)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~--------~~~~l~~~le~~DGVILsGG~didp~~ 79 (426)
.-+|+|+|+.-+..... ..-..++..+|+.+.++.... +.+.+...++.+++|++||| ..
T Consensus 975 ~~kpkvaIl~~pGtNce-------~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGG-----FS 1042 (1239)
T TIGR01857 975 VEKPRVVIPVFPGTNSE-------YDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGG-----FS 1042 (1239)
T ss_pred CCCCeEEEEECCCCCCH-------HHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCc-----cC
Confidence 35799999987655322 112456778998887776322 12233234678999999999 34
Q ss_pred ccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHh---CCcccccchhhhccc
Q 014368 80 YEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC---GGTLYQDIEKEVSRK 156 (426)
Q Consensus 80 y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~---GG~l~~~~~~e~g~~ 156 (426)
|+++... + =-|+.. ..+..-....++.+++++.|+||||.|+|+|...- ++.+.... +
T Consensus 1043 yGD~l~~-~---~~~~aa---------~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~~~~~~~--~---- 1103 (1239)
T TIGR01857 1043 AGDEPDG-S---AKFIAA---------ILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYGNIEAAN--E---- 1103 (1239)
T ss_pred cccccch-h---HHHHHH---------HhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCccccccc--c----
Confidence 6665410 0 012111 11212234555666678999999999999998731 12211110 0
Q ss_pred CCCCcceeecccCCCCCceEEEEEec-CCcccccccccccccceEEEEecccccc--------hhcc-CCCeEEEEE---
Q 014368 157 CPENQRVVHIDYDNYDGHRHVVKVVK-DTPLHDWFKDSLEEEKMEIWVNSYHHQG--------VKRL-AQRFVPMAF--- 223 (426)
Q Consensus 157 ~~~~~~v~H~~~~~~~g~~~~V~v~~-~s~L~~~~~~~~~~~~~~~~Vns~H~~~--------V~~L-p~g~~vlA~--- 223 (426)
......|....++...+..+++.. .|+++..+... ..+.+...|+.+ +++| ..+..++-+
T Consensus 1104 --~~p~l~~N~s~rf~~r~v~~~v~~~~s~~~~~~~~g-----~~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd~ 1176 (1239)
T TIGR01857 1104 --TSPTLTYNDINRHVSKIVRTRIASTNSPWLSGVSVG-----DIHAIPVSHGEGRFVASDEVLAELRENGQIATQYVDF 1176 (1239)
T ss_pred --CCceeeecCCCCeEEeeeEEEECCCCChhHhcCCCC-----CEEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeCC
Confidence 111223333333334466666654 46666665421 145666667654 1122 122222222
Q ss_pred ----------eCCC---eEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHH
Q 014368 224 ----------APDG---LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (426)
Q Consensus 224 ----------s~dG---~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (426)
+++| -|+||..++ .+++|.+-||||...+.-.+.+-.....||++.++
T Consensus 1177 ~g~~t~~~p~NPNGS~~~IaGi~s~d-------Grvlg~MpHpER~~~~~~~~~~g~~~~~iF~~~v~ 1237 (1239)
T TIGR01857 1177 NGKPSMDSKYNPNGSSLAIEGITSPD-------GRIFGKMGHSERYGDGLFKNIPGNKDQHLFASGVK 1237 (1239)
T ss_pred CCCcccCCCCCCCCChhhhhEeECCC-------CCEEEECCCcccccCcccCCCCchhhhHHHHHHHh
Confidence 4566 688999887 78999999999987643322111113578877764
No 89
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.82 E-value=7.8e-08 Score=112.26 Aligned_cols=203 Identities=19% Similarity=0.225 Sum_probs=112.9
Q ss_pred CCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCC
Q 014368 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLS 88 (426)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~ 88 (426)
-+|+|+|+.-+..... ..-+.++..+|+.+.++.... ...-...++.++||++|||- .|++....
T Consensus 1034 ~~pkv~il~~pG~N~~-------~e~~~Af~~aG~~~~~v~~~d-l~~~~~~l~~~~~l~~~GGF-----S~gD~lgs-- 1098 (1290)
T PRK05297 1034 ARPKVAILREQGVNSH-------VEMAAAFDRAGFDAIDVHMSD-LLAGRVTLEDFKGLVACGGF-----SYGDVLGA-- 1098 (1290)
T ss_pred CCCeEEEEECCCCCCH-------HHHHHHHHHcCCCeEEEEeec-CcCCCCChhhCcEEEECCcc-----CCcccchH--
Confidence 4688999876654322 122556888999988776432 11101235789999999994 45554320
Q ss_pred hhHHHHHHhhcCCCccccchhhHHHHHHHHHHH-HcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecc
Q 014368 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCL-ERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHID 167 (426)
Q Consensus 89 ~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~al-e~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~ 167 (426)
.. =|+.+ ..+..-..+.++.++ +.+.++||||.|+|+|... | .+.+.. + ....+.++.
T Consensus 1099 g~--~~a~~---------~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~l-g-~l~p~~--~------~~p~l~~N~ 1157 (1290)
T PRK05297 1099 GE--GWAKS---------ILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNL-K-EIIPGA--E------HWPRFVRNR 1157 (1290)
T ss_pred HH--HHHHH---------hhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHh-C-CccCCC--C------CCCeEeecC
Confidence 00 01111 011112234455544 6789999999999999875 3 222211 0 011222333
Q ss_pred cCCCCCceEEEEEec-CCcccccccccccccceEEEEecccccc--------hhcc-CCCeEEEEE-------------e
Q 014368 168 YDNYDGHRHVVKVVK-DTPLHDWFKDSLEEEKMEIWVNSYHHQG--------VKRL-AQRFVPMAF-------------A 224 (426)
Q Consensus 168 ~~~~~g~~~~V~v~~-~s~L~~~~~~~~~~~~~~~~Vns~H~~~--------V~~L-p~g~~vlA~-------------s 224 (426)
...+...|..+++.. .|+++..+... .+.++-.|+++ +..| ..+..++-+ +
T Consensus 1158 s~rfesr~~~~~v~~~~s~~~~~~~g~------~l~~~vaHgeGr~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~N 1231 (1290)
T PRK05297 1158 SEQFEARFSLVEVQESPSIFLQGMAGS------RLPIAVAHGEGRAEFPDAHLAALEAKGLVALRYVDNHGQVTETYPAN 1231 (1290)
T ss_pred CCCeEEeeeEEEECCCCChhHhhcCCC------EEEEEEEcCcccEEcCHHHHHHHHHCCcEEEEEECCCCCcccCCCCC
Confidence 333344566777753 46666655432 34555556543 1112 122222222 4
Q ss_pred CCC---eEEEEEeCCCCCCCCCCcEEEEcccCCccCCCC
Q 014368 225 PDG---LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPD 260 (426)
Q Consensus 225 ~dG---~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~ 260 (426)
++| .|+||..++ .+++|+..||||...+.
T Consensus 1232 PNGS~~~IaGi~s~d-------GrvlglMpHPEr~~~~~ 1263 (1290)
T PRK05297 1232 PNGSPNGITGLTTAD-------GRVTIMMPHPERVFRTV 1263 (1290)
T ss_pred CCCChhcceEeECCC-------CCEEEEcCChHHhcchh
Confidence 566 589999987 78999999999986543
No 90
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.82 E-value=1e-07 Score=110.57 Aligned_cols=230 Identities=17% Similarity=0.198 Sum_probs=124.2
Q ss_pred CCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCC
Q 014368 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLS 88 (426)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~ 88 (426)
.+|+|.|+.-+..... ..-+.++..+|+.+++|... +...-...++.++||+||||- .|++... +
T Consensus 1036 ~~pkVaVl~~pGtN~~-------~e~~~Af~~aGf~~~~V~~~-dl~~~~~~L~~~~glv~pGGF-----SyGD~l~--s 1100 (1307)
T PLN03206 1036 SKPKVAIIREEGSNGD-------REMAAAFYAAGFEPWDVTMS-DLLNGRISLDDFRGIVFVGGF-----SYADVLD--S 1100 (1307)
T ss_pred CCCeEEEEECCCCCCH-------HHHHHHHHHcCCceEEEEee-ecccccccccceeEEEEcCcC-----CCccccc--h
Confidence 4789999876654322 12255688899998877643 211112335789999999994 3555442 0
Q ss_pred hhHHHHHHhhcCCCccccchhhHHHHHHHHHHH-HcCCCEEEEehHHHHHHHHhCCcccccch--hhhcccC-CCCccee
Q 014368 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCL-ERNIPYLGICRGSQVLNVACGGTLYQDIE--KEVSRKC-PENQRVV 164 (426)
Q Consensus 89 ~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~al-e~~iPILGIClG~QlLava~GG~l~~~~~--~e~g~~~-~~~~~v~ 164 (426)
.. -|+.+. .+..-..+.++.++ +.+.++||||.|+|+|... | +.+... ..++... .......
T Consensus 1101 g~--~wa~~i---------~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~l-g--llPg~~~~~~~~~~~~e~~p~l~ 1166 (1307)
T PLN03206 1101 AK--GWAGSI---------RFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALL-G--WVPGPQVGGGLGAGGDPSQPRFV 1166 (1307)
T ss_pred HH--HHHHHH---------HhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHc-C--CCCCCccccccccccccCCceee
Confidence 10 111111 11122244555666 4589999999999999874 3 222110 0000000 0111233
Q ss_pred ecccCCCCCceEEEEEec-CCcccccccccccccceEEEEecccccch---------hcc-CCCeEEEEE----------
Q 014368 165 HIDYDNYDGHRHVVKVVK-DTPLHDWFKDSLEEEKMEIWVNSYHHQGV---------KRL-AQRFVPMAF---------- 223 (426)
Q Consensus 165 H~~~~~~~g~~~~V~v~~-~s~L~~~~~~~~~~~~~~~~Vns~H~~~V---------~~L-p~g~~vlA~---------- 223 (426)
++....+...|..+++.. .|+++..+... .+.++..|+.+= ..| ..+..++-+
T Consensus 1167 ~N~s~rfesr~v~v~V~~s~si~l~~~~G~------~l~i~vaHgEGr~~~~~~~~l~~l~~~gqva~rY~d~~g~~t~~ 1240 (1307)
T PLN03206 1167 HNESGRFECRFTSVTIEDSPAIMLKGMEGS------TLGVWAAHGEGRAYFPDESVLDEVLKSNLAPVRYCDDDGEPTEQ 1240 (1307)
T ss_pred ecCCCCeEEeceEEEECCCCChhhcccCCC------EEEEEEEcCCCCeecCCHHHHHHHHhcCeEEEEEeCCCCCccCC
Confidence 333344445667777743 45666555432 355555555331 112 123332222
Q ss_pred ---eCCC---eEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCC-----C-----CCCCcHHHHHHHHHHH
Q 014368 224 ---APDG---LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDE-----F-----DYPGCPSAYQEFVKAV 280 (426)
Q Consensus 224 ---s~dG---~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~-----~-----d~~~~~~lf~~Fv~av 280 (426)
+++| .|+||..++ .+++|+..||||...+..-. . ......++|++.+.+|
T Consensus 1241 yP~NPNGS~~~IAGi~s~d-------GRvlgmMpHPER~~~~~q~~~~p~~~~~~~~~~spw~~~F~na~~w~ 1306 (1307)
T PLN03206 1241 YPFNPNGSPLGIAALCSPD-------GRHLAMMPHPERCFLMWQFPWYPKEWGVDPAGPSPWLKMFQNAREWC 1306 (1307)
T ss_pred CCCCCCCChhhceeeECCC-------CCEEEEcCCHHHhhhhhhCCCCCccccccCCCCCcHHHHHHHHHHHh
Confidence 4556 689999987 78999999999986543211 0 0223556777666543
No 91
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.79 E-value=4.9e-08 Score=113.75 Aligned_cols=203 Identities=17% Similarity=0.194 Sum_probs=112.2
Q ss_pred CCCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCC
Q 014368 8 VILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNL 87 (426)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~ 87 (426)
..+|+|.|+.-+..... ..-+.++..+|+.+++|.... ...-...++.++||++|||- .|++...
T Consensus 1053 ~~~p~vail~~pG~N~~-------~e~~~Af~~aGf~~~~v~~~d-l~~~~~~l~~~~~lv~~GGF-----SygD~lg-- 1117 (1310)
T TIGR01735 1053 GVRPKVAILREQGVNGD-------REMAAAFDRAGFEAWDVHMSD-LLAGRVHLDEFRGLAACGGF-----SYGDVLG-- 1117 (1310)
T ss_pred CCCceEEEEECCCCCCH-------HHHHHHHHHhCCCcEEEEEec-cccCCcchhheeEEEEcCCC-----CCccchh--
Confidence 45799999876654322 112456888998888776432 11101135679999999994 3565432
Q ss_pred ChhHHHHHHhhcCCCccccchhhHHHHHHHHHHH-HcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeec
Q 014368 88 SPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCL-ERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHI 166 (426)
Q Consensus 88 ~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~al-e~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~ 166 (426)
+.. =|+.+. .+..-..+.++.++ +.+.++||||.|+|+|....| +.+.. + ......|+
T Consensus 1118 sg~--~~a~~i---------~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~g--llp~~--~------~~p~l~~N 1176 (1310)
T TIGR01735 1118 AGK--GWAKSI---------LFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLE--WIPGT--E------NWPHFVRN 1176 (1310)
T ss_pred HHH--HHHHHH---------HhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhC--cCCCC--C------CCceeeec
Confidence 000 011111 11112234455555 678999999999999994444 11111 0 00012222
Q ss_pred ccCCCCCceEEEEEec-CCcccccccccccccceEEEEecccccc---------hhcc-CCCeEEEEE------------
Q 014368 167 DYDNYDGHRHVVKVVK-DTPLHDWFKDSLEEEKMEIWVNSYHHQG---------VKRL-AQRFVPMAF------------ 223 (426)
Q Consensus 167 ~~~~~~g~~~~V~v~~-~s~L~~~~~~~~~~~~~~~~Vns~H~~~---------V~~L-p~g~~vlA~------------ 223 (426)
....+...|..+++.+ .|++++.+... .+.++..|+.+ ...| ..+..++-+
T Consensus 1177 ~s~~fe~r~~~~~v~~s~s~~~~~~~g~------~l~~~vaHgEGr~~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp 1250 (1310)
T TIGR01735 1177 NSERFEARVASVRVGESPSIMLRGMAGS------RLPVAVAHGEGYAAFSSPELQAQADASGLAALRYIDDDGNPTEAYP 1250 (1310)
T ss_pred CCCCeEEeeeEEEECCCCChhhhhcCCC------EEEEEeEcCCCCeeeCCHHHHHHHHhCCeEEEEEeCCCCCccCCCC
Confidence 2233334566777754 45666555432 34455555432 1112 122232222
Q ss_pred -eCCC---eEEEEEeCCCCCCCCCCcEEEEcccCCccCCC
Q 014368 224 -APDG---LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRP 259 (426)
Q Consensus 224 -s~dG---~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~ 259 (426)
+++| .|+||..++ .+++|+..||||...+
T Consensus 1251 ~NPNGS~~~IaGi~s~d-------Grvl~~MpHPEr~~~~ 1283 (1310)
T TIGR01735 1251 LNPNGSPGGIAGITSCD-------GRVTIMMPHPERVFRA 1283 (1310)
T ss_pred CCCCCChhcceEeECCC-------CCEEEEcCCHHHhhhH
Confidence 4556 589999987 7899999999997654
No 92
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.52 E-value=4.8e-07 Score=84.91 Aligned_cols=75 Identities=23% Similarity=0.170 Sum_probs=53.1
Q ss_pred HHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHH
Q 014368 35 LDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIEL 114 (426)
Q Consensus 35 l~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~ 114 (426)
..++...|+.++++....+ ++.+|+|||+||.+.. .++.|++. .-..
T Consensus 16 ~~~~~~~G~~~~~~~~~~~-------~~~~d~lilpGg~~~~-------------~~~~~~~~-------------~~~~ 62 (194)
T cd01750 16 DPLAREPGVDVRYVEVPEG-------LGDADLIILPGSKDTI-------------QDLAWLRK-------------RGLA 62 (194)
T ss_pred HHHHhcCCceEEEEeCCCC-------CCCCCEEEECCCcchH-------------HHHHHHHH-------------cCHH
Confidence 4457778999998876443 3468999999996321 12233221 1134
Q ss_pred HHHHHHHHcCCCEEEEehHHHHHHHHhC
Q 014368 115 RLAKLCLERNIPYLGICRGSQVLNVACG 142 (426)
Q Consensus 115 ~lir~ale~~iPILGIClG~QlLava~G 142 (426)
..++.+.+.++||||||.|+|+|+..+.
T Consensus 63 ~~i~~~~~~g~pvlgiC~G~qlL~~~~~ 90 (194)
T cd01750 63 EAIKNYARAGGPVLGICGGYQMLGKYIV 90 (194)
T ss_pred HHHHHHHHCCCcEEEECHHHHHhhhhcc
Confidence 5677778899999999999999998773
No 93
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.49 E-value=4e-07 Score=85.78 Aligned_cols=84 Identities=19% Similarity=0.230 Sum_probs=58.6
Q ss_pred cccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCcccc
Q 014368 27 VDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAID 106 (426)
Q Consensus 27 ~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d 106 (426)
..|.-+.++++|++.|+.++++....+ +. +..+|+||||||.. ..+ +.+++
T Consensus 9 F~f~y~e~~~~l~~~G~~v~~~s~~~~-~~----l~~~D~lilPGG~~---~~~-----------~~~L~---------- 59 (198)
T cd03130 9 FNFYYPENLELLEAAGAELVPFSPLKD-EE----LPDADGLYLGGGYP---ELF-----------AEELS---------- 59 (198)
T ss_pred cccccHHHHHHHHHCCCEEEEECCCCC-CC----CCCCCEEEECCCch---HHH-----------HHHHH----------
Confidence 356667789999999999998865322 22 23489999999842 111 12221
Q ss_pred chhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHh
Q 014368 107 KEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (426)
Q Consensus 107 ~~rd~~e~~lir~ale~~iPILGIClG~QlLava~ 141 (426)
+..-..+.++.+.++++||+|||.|+|+|....
T Consensus 60 --~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~~ 92 (198)
T cd03130 60 --ANQSMRESIRAFAESGGPIYAECGGLMYLGESL 92 (198)
T ss_pred --hhHHHHHHHHHHHHcCCCEEEEcccHHHHHHHh
Confidence 112235677888889999999999999999876
No 94
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=98.42 E-value=4.5e-06 Score=83.21 Aligned_cols=149 Identities=17% Similarity=0.144 Sum_probs=83.7
Q ss_pred CCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHH-HHHH
Q 014368 62 EPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQV-LNVA 140 (426)
Q Consensus 62 e~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~Ql-Lava 140 (426)
+.+||+|+||-|- .---|.+...| ++ ...++.++.++..+.|.||.|.|. |...
T Consensus 97 ~~~DglIITGAPv-E~l~Fe~V~YW------~E------------------l~~i~dwa~~~v~stl~iCWgAqAaLy~~ 151 (298)
T PF04204_consen 97 RKFDGLIITGAPV-EQLPFEEVDYW------DE------------------LTEIFDWAKTHVTSTLFICWGAQAALYHF 151 (298)
T ss_dssp S-EEEEEE---TT-TTS-GGGSTTH------HH------------------HHHHHHHHHHHEEEEEEETHHHHHHHHHH
T ss_pred CCCCEEEEeCCCc-CCCCcccCCcH------HH------------------HHHHHHHHHHcCCcchhhhHHHHHHHHHH
Confidence 4799999999871 11225544432 11 245778888889999999999999 7777
Q ss_pred hCCcccccchhhhcccCCCCcceeecccCCCCCceEEEE-EecCCcccccccccccccceEEEEecccccchh--cc--C
Q 014368 141 CGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVK-VVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RL--A 215 (426)
Q Consensus 141 ~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~-v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~--~L--p 215 (426)
+|-.-.....+-+| ..+.. +.+.++|.+++.+ .|.+...-+-.++ .+ .
T Consensus 152 yGI~K~~l~~KlfG--------------------Vf~~~~~~~~~pLl~Gfdd-------~f~~PhSR~t~i~~~~i~~~ 204 (298)
T PF04204_consen 152 YGIPKYPLPEKLFG--------------------VFEHRVLDPDHPLLRGFDD-------TFFAPHSRYTEIDRDDIKKA 204 (298)
T ss_dssp H----EEEEEEEEE--------------------EEEEEES-SS-GGGTT--S-------EEEEEEEEEEE--HHHHCT-
T ss_pred cCCCcccCCCccee--------------------ceeeeccCCCChhhcCCCc-------cccCCcccccCCCHHHHhcC
Confidence 78664433222222 23333 2357899999876 4555433222332 23 5
Q ss_pred CCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014368 216 QRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 216 ~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
++++|+|.+++.-+-.+..++ ...+=+|.|||+... .|-+++.+...
T Consensus 205 ~~L~vLa~s~~~G~~l~~~~d-------~r~vfi~GH~EYd~~------------TL~~EY~RD~~ 251 (298)
T PF04204_consen 205 PGLEVLAESEEAGVFLVASKD-------GRQVFITGHPEYDAD------------TLAKEYRRDLA 251 (298)
T ss_dssp TTEEEEEEETTTEEEEEEECC-------CTEEEE-S-TT--TT------------HHHHHHHHHHH
T ss_pred CCcEEEeccCCcceEEEEcCC-------CCEEEEeCCCccChh------------HHHHHHHHHHh
Confidence 789999999877677777776 456678999999764 56666665554
No 95
>PHA03366 FGAM-synthase; Provisional
Probab=98.41 E-value=5.1e-06 Score=97.27 Aligned_cols=234 Identities=13% Similarity=0.092 Sum_probs=120.1
Q ss_pred CCCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCCCCCCCcccccCCC
Q 014368 8 VILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSN 86 (426)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~ 86 (426)
..+|+|.|+.-+..... ..-+.++..+|+.+++|.... ..... ++.++||++|||- .|+++...
T Consensus 1026 ~~~prVaIl~~pG~N~~-------~e~~~Af~~aGf~~~~v~~~dL~~~~~---l~~f~glv~~GGF-----S~gD~l~~ 1090 (1304)
T PHA03366 1026 DKRHRVAVLLLPGCPGP-------HALLAAFTNAGFDPYPVSIEELKDGTF---LDEFSGLVIGGSS-----GAEDSYTG 1090 (1304)
T ss_pred CCCCeEEEEECCCCCCH-------HHHHHHHHHcCCceEEEEeecCCCCCc---cccceEEEEcCCC-----CCcccccH
Confidence 45799999876654221 122567888999988776422 11111 6789999999994 35543320
Q ss_pred CChhHHHHHHhhcCCCccccchhhHHHHHHHHHHH-HcCCCEEEEeh-HHHHHHHHhCCcc--cccchhhhcccCCC-Cc
Q 014368 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCL-ERNIPYLGICR-GSQVLNVACGGTL--YQDIEKEVSRKCPE-NQ 161 (426)
Q Consensus 87 ~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~al-e~~iPILGICl-G~QlLava~GG~l--~~~~~~e~g~~~~~-~~ 161 (426)
.. -|+... .+..-..+.++.++ +.+.++||||- |+|+|... | -+ .......+++-.+. ..
T Consensus 1091 --~~--~~a~~i---------l~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~l-g-ll~~~~~~~~p~g~i~~~~~~ 1155 (1304)
T PHA03366 1091 --AR--AAVAAL---------LSNPAVRDALLRFLNRPDTFSLGCGELGCQILFAL-K-AVGSTAPSPVPGTETEEQWPI 1155 (1304)
T ss_pred --HH--HHHHHh---------hhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHc-C-CccCCccccccccccccCCCC
Confidence 00 121111 11112234555556 45899999998 99999873 2 11 01110011110000 11
Q ss_pred ceeecccCCCCCceEEEEEec--CCcccccccccccccceEEEEeccc------ccc-hhcc-CCCeEEEE---------
Q 014368 162 RVVHIDYDNYDGHRHVVKVVK--DTPLHDWFKDSLEEEKMEIWVNSYH------HQG-VKRL-AQRFVPMA--------- 222 (426)
Q Consensus 162 ~v~H~~~~~~~g~~~~V~v~~--~s~L~~~~~~~~~~~~~~~~Vns~H------~~~-V~~L-p~g~~vlA--------- 222 (426)
...|+....+...|..+++.+ .|.+++.+....+ ..++...| ... ...| ..+...+-
T Consensus 1156 ~l~~N~s~rfesr~~~v~i~~~s~Si~l~~~~Gs~l----P~w~~g~~~~~~~~~~~~~~~l~~~~~ia~~Y~d~~~~~g 1231 (1304)
T PHA03366 1156 TLEPNASGLYESRWLNFYIPETTKSVALRPLRGSVL----PCWAQGTHLGFRYPNDGMEYILRNSGQIAATFHGADVDPG 1231 (1304)
T ss_pred eEeeeCCCCeEeeceEEEeCCCCCCccccccCCCCC----CEEeCCCccccccCCHHHHHHHHhCCcEEEEEeCCCCCcC
Confidence 334444445556677788765 3445544433211 11111111 000 1111 11211111
Q ss_pred -------EeCCC--eEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCC-----C---CCCCCcHHHHHHHHHHHHH
Q 014368 223 -------FAPDG--LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSD-----E---FDYPGCPSAYQEFVKAVIA 282 (426)
Q Consensus 223 -------~s~dG--~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~-----~---~d~~~~~~lf~~Fv~av~~ 282 (426)
.|++| .|+||..++ ..++|+..|||+...+..- + .......++|++-..+|.+
T Consensus 1232 ~~t~~yP~NPNGS~~IaGi~s~d-------GR~l~mMphPer~~~~~q~~~~P~~~~~~~~sPW~~mF~na~~W~~~ 1301 (1304)
T PHA03366 1232 NPARHYPRNPTGNSNVAGLCSAD-------GRHLALLFDPSLSFHPWQWQHVPPENGPLKVSPWKLMFQDLHLWCLK 1301 (1304)
T ss_pred ccccCCCCCCCcCcceeeEECCC-------CCEEEecCCHHHhhhhhhCCCCCcccCCCCCChHHHHHHHHHHHHHh
Confidence 13444 789999987 7899999999997653221 1 1223455667666666653
No 96
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=98.40 E-value=4.2e-07 Score=84.34 Aligned_cols=110 Identities=16% Similarity=0.071 Sum_probs=69.1
Q ss_pred cCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 61 FEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 61 le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
...+||+|+||.|- .-.-|++...| ++ ...++.++.++.+|+||||.|+|....+
T Consensus 60 ~~~yDGlIITGApv-e~~~fe~v~Yw------~E------------------l~~i~dwa~~~v~stl~iCWgaqaal~~ 114 (175)
T cd03131 60 DAKFDGLIVTGAPV-EHLPFEQVDYW------EE------------------LTEILDWAKTHVTSTLFSCWAAMAALYY 114 (175)
T ss_pred ccCCCEEEEeCCCc-ccCCccccchH------HH------------------HHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 46899999999971 11112222211 11 2356777778899999999999999999
Q ss_pred hCCcc-cccchhhhcccCCCCcceeecccCCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhc--c--C
Q 014368 141 CGGTL-YQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKR--L--A 215 (426)
Q Consensus 141 ~GG~l-~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~--L--p 215 (426)
+||.. .....+.+| .....+..+++|+..+++ .|.+...|+..|.. + .
T Consensus 115 ~yGi~k~~~~~K~~G--------------------vf~~~~~~~hpL~~g~~d-------~F~~PhSR~~~v~~~~~~~~ 167 (175)
T cd03131 115 FYGIKKHQLPEKIFG--------------------VFPHTILEPHPLLRGLDD-------GFDVPHSRYAEVDREDIEEA 167 (175)
T ss_pred HcCcccccCCCceEE--------------------EEEeeecCCCccccCCCC-------ceeecCcccccCCHHHHhhC
Confidence 99874 333222222 222223337788888876 67777777766642 2 3
Q ss_pred CCeEEEE
Q 014368 216 QRFVPMA 222 (426)
Q Consensus 216 ~g~~vlA 222 (426)
++++|++
T Consensus 168 ~~l~il~ 174 (175)
T cd03131 168 AGLTILA 174 (175)
T ss_pred CCCEEcc
Confidence 5566554
No 97
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.36 E-value=2.1e-05 Score=83.03 Aligned_cols=94 Identities=18% Similarity=0.257 Sum_probs=64.1
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChh
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e 90 (426)
++|+|+-.+ . ..|--..+++.++..|+.++.+....+ +. +..+|+|+|+||. |..|...
T Consensus 246 ~~iava~d~-a-----f~f~y~e~~~~L~~~g~~~~~~~~~~~-~~----l~~~D~lilpGG~---~~~~~~~------- 304 (451)
T PRK01077 246 VRIAVARDA-A-----FNFYYPENLELLRAAGAELVFFSPLAD-EA----LPDCDGLYLGGGY---PELFAAE------- 304 (451)
T ss_pred ceEEEEecC-c-----ccccHHHHHHHHHHCCCEEEEeCCcCC-CC----CCCCCEEEeCCCc---hhhHHHH-------
Confidence 577776544 2 234445578899999999998865322 22 2468999999994 2222211
Q ss_pred HHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHh
Q 014368 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (426)
Q Consensus 91 ~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~ 141 (426)
+. ++......++.+.++++||+|||.|+|+|...+
T Consensus 305 ---l~-------------~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 305 ---LA-------------ANTSMRASIRAAAAAGKPIYAECGGLMYLGESL 339 (451)
T ss_pred ---Hh-------------hCchhHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 11 111235678888889999999999999999877
No 98
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.30 E-value=9.1e-06 Score=94.70 Aligned_cols=206 Identities=15% Similarity=0.099 Sum_probs=106.3
Q ss_pred CCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCC
Q 014368 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLS 88 (426)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~ 88 (426)
.+|+|.|+.-+..... ..-+.++..+|+.+++|....-... +.++.++||+++||.+ |++... +
T Consensus 928 ~~p~VaIl~~pG~N~~-------~e~~~Af~~aGf~~~~v~~~dl~~~--~~l~~f~glv~~Ggfs-----y~D~lg--s 991 (1202)
T TIGR01739 928 PRHQVAVLLLPGQSVP-------HGLLAALTNAGFDPRIVSITELKKT--DFLDTFSGLIIGGASG-----TLDSEV--G 991 (1202)
T ss_pred CCCeEEEEeCCCCCCH-------HHHHHHHHHcCCceEEEEeccCCCC--CchhheEEEEEcCcCC-----CCccch--H
Confidence 4788888876654322 1235678889999887764321110 1245799999999953 443221 0
Q ss_pred hhHHHHHHhhcCCCccccchhhHHHHHHHHHHH-HcCCCEEEEeh-HHHHHHHHhCCcccccchh----hhcccCCCCcc
Q 014368 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCL-ERNIPYLGICR-GSQVLNVACGGTLYQDIEK----EVSRKCPENQR 162 (426)
Q Consensus 89 ~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~al-e~~iPILGICl-G~QlLava~GG~l~~~~~~----e~g~~~~~~~~ 162 (426)
.. =|+.++ .+..-..+.++.++ +.+.++||||- |+|+|... |---+..... +... .....
T Consensus 992 g~--~~a~~i---------l~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~l-g~l~~~~~~~~~~~~~~~--~~~~~ 1057 (1202)
T TIGR01739 992 AR--ALAAAL---------LRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLAL-NIVGYTQSSPFITVPTEV--QEPPR 1057 (1202)
T ss_pred HH--HHHHHh---------hcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHc-CCCcCCcccccccccccc--cCCce
Confidence 00 111111 11122234455556 45899999998 99999873 2110111000 0000 01112
Q ss_pred eeecccCCCCCceEEEEEec--CCcccccccccccccceEEEEeccccc--c--------hhcc-CCCeEEEE-------
Q 014368 163 VVHIDYDNYDGHRHVVKVVK--DTPLHDWFKDSLEEEKMEIWVNSYHHQ--G--------VKRL-AQRFVPMA------- 222 (426)
Q Consensus 163 v~H~~~~~~~g~~~~V~v~~--~s~L~~~~~~~~~~~~~~~~Vns~H~~--~--------V~~L-p~g~~vlA------- 222 (426)
..++....+...|..+++.. .|.+++.+... .+.++. |+. + ...| ..+...+-
T Consensus 1058 l~~N~s~~fesr~~~v~i~~~s~si~~~~~~g~------~lp~wv-~g~~~g~~~~~~~~~~~l~~~g~va~~Y~d~~~~ 1130 (1202)
T TIGR01739 1058 LEKNASGLYESRWLNFYIPETTKSVFLRPLRGS------VLPCWA-QGTHLGLYHPDDGVEEELENSGQIASTFHGNSPS 1130 (1202)
T ss_pred eeecCCCCeEEeeeEEEeCCCCCChhhhhcCCC------Eeccce-EeccCCcEECCHHHHHHHHhCCeEEEEEeCCCCC
Confidence 33333344455677787755 34555554432 122221 111 1 1112 11222211
Q ss_pred ---------EeCCC--eEEEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 014368 223 ---------FAPDG--LIEGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (426)
Q Consensus 223 ---------~s~dG--~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (426)
.|++| .|+||..++ ..++|+..|||+...
T Consensus 1131 ~g~~a~~yP~NPNGS~~IAGi~s~d-------GR~l~lMphPer~~~ 1170 (1202)
T TIGR01739 1131 SGLPATNYPRNPSGGSNVAGLCSAD-------GRHLALLIDPSLSFF 1170 (1202)
T ss_pred CCccccCCCCCCCcCcceeeEECCC-------CCEEEecCCHHHhhh
Confidence 13444 789999987 789999999999765
No 99
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.26 E-value=4.2e-05 Score=80.81 Aligned_cols=94 Identities=18% Similarity=0.282 Sum_probs=64.5
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChh
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e 90 (426)
++|+|+-.+ . ..|-.+.+++.|++.|+.++.+....+ +.+ ..+|+|+|+||. |..+...
T Consensus 245 ~~Iava~d~-a-----fnFy~~~~~~~L~~~g~~~~~~~~~~d-~~l----~~~d~l~ipGG~---~~~~~~~------- 303 (449)
T TIGR00379 245 VRIAVAQDQ-A-----FNFYYQDNLDALTHNAAELVPFSPLED-TEL----PDVDAVYIGGGF---PELFAEE------- 303 (449)
T ss_pred cEEEEEech-h-----hceeHHHHHHHHHHCCCEEEEECCccC-CCC----CCCCEEEeCCcH---HHHHHHH-------
Confidence 477776543 2 234447889999999999998865322 122 368999999994 3322211
Q ss_pred HHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHh
Q 014368 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (426)
Q Consensus 91 ~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~ 141 (426)
..+.......++.+.+++.||||||.|+|+|+..+
T Consensus 304 ----------------l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 304 ----------------LSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred ----------------HHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 01112235677888889999999999999999877
No 100
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=98.06 E-value=3.5e-05 Score=76.58 Aligned_cols=138 Identities=15% Similarity=0.076 Sum_probs=84.9
Q ss_pred CCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHH-HHHH
Q 014368 62 EPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQV-LNVA 140 (426)
Q Consensus 62 e~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~Ql-Lava 140 (426)
+.+||+|+||-|- .---|++...| ++ ...++.++.++-...|.||.|.|. |...
T Consensus 98 ~~fDGlIITGAPv-E~l~FeeV~YW------~E------------------l~~I~dwsk~~v~Stl~iCWaAqAaLy~~ 152 (300)
T TIGR01001 98 RKFDGLIITGAPV-ELVPFEDVAYW------EE------------------LTEIMEWSKHNVTSTMFICWAAQAGLKYF 152 (300)
T ss_pred CCCCEEEEcCCCc-CCCCcccCCcH------HH------------------HHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 5799999999871 11124444332 11 245778888888999999999998 5556
Q ss_pred hCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEecCCcccccccccccccceEEEEecccccchh--cc--CC
Q 014368 141 CGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RL--AQ 216 (426)
Q Consensus 141 ~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~--~L--p~ 216 (426)
+|-.-+....+-+| ..+-.+.++++|.+++.+ .|.+...-+-.|. .+ .+
T Consensus 153 yGI~K~~l~~KlfG--------------------Vf~h~~~~~~pL~rGfdd-------~f~~PhSR~t~i~~~~i~~~~ 205 (300)
T TIGR01001 153 YGIPKYTLPEKLSG--------------------VYKHDIAPDSLLLRGFDD-------FFLAPHSRYADFDAEDIDKVT 205 (300)
T ss_pred cCCCccccCCceEE--------------------eecCccCCCCccccCCCC-------ccccCCCCCCCCCHHHHhcCC
Confidence 67543332222222 111112267888888876 4544433222333 12 35
Q ss_pred CeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 014368 217 RFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (426)
Q Consensus 217 g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (426)
+++|++.+++.-+-.+..++ ...+=++.|||+...
T Consensus 206 ~L~vla~s~e~G~~l~~s~d-------~r~vfi~GH~EYd~~ 240 (300)
T TIGR01001 206 DLEILAESDEAGVYLAANKD-------ERNIFVTGHPEYDAY 240 (300)
T ss_pred CCeEEecCCCcceEEEEcCC-------CCEEEEcCCCccChh
Confidence 89999999776666666665 234459999999764
No 101
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=98.03 E-value=2.3e-05 Score=71.69 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=18.3
Q ss_pred HHHHcC-CCEEEEehHHHHHHHHh
Q 014368 119 LCLERN-IPYLGICRGSQVLNVAC 141 (426)
Q Consensus 119 ~ale~~-iPILGIClG~QlLava~ 141 (426)
....++ +|+||.|.||-+|+.-+
T Consensus 85 ~fVhn~~k~~WGTCAGmI~LS~ql 108 (226)
T KOG3210|consen 85 AFVHNPSKVTWGTCAGMIYLSQQL 108 (226)
T ss_pred HHhcCCCccceeechhhhhhhhhh
Confidence 334444 99999999999998866
No 102
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.97 E-value=5.8e-05 Score=68.58 Aligned_cols=56 Identities=23% Similarity=0.218 Sum_probs=40.3
Q ss_pred cCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 61 FEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 61 le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
++.+|+|+|+||- |..++. ++.+ .......|+.+.+.+.||+|||-|+|+|...
T Consensus 5 ~~~~D~i~lpGg~---pe~~~~----------~l~~-------------~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~ 58 (158)
T PF07685_consen 5 PPDADGIYLPGGY---PELFAL----------ELSR-------------NRGLKEAIREAAEAGGPIYAECGGYQYLGES 58 (158)
T ss_pred CCCCCEEEECCCc---HHHHHH----------HHHH-------------HhCHHHHHHHHHHcCCcEEEEchHHHHHHHH
Confidence 4579999999993 443332 1111 1223567888889999999999999999987
Q ss_pred hC
Q 014368 141 CG 142 (426)
Q Consensus 141 ~G 142 (426)
+-
T Consensus 59 i~ 60 (158)
T PF07685_consen 59 II 60 (158)
T ss_pred Hh
Confidence 64
No 103
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.97 E-value=1.2e-05 Score=85.30 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=17.5
Q ss_pred HcCCCEEEEehHHHHHHHHh
Q 014368 122 ERNIPYLGICRGSQVLNVAC 141 (426)
Q Consensus 122 e~~iPILGIClG~QlLava~ 141 (426)
+.++||||||.|||+|+...
T Consensus 63 ~~g~pvlGICgG~QmLg~~~ 82 (476)
T PRK06278 63 NFDGYIIGICSGFQILSEKI 82 (476)
T ss_pred HcCCeEEEEcHHHHhccccc
Confidence 44899999999999998765
No 104
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.95 E-value=0.00019 Score=75.60 Aligned_cols=92 Identities=22% Similarity=0.234 Sum_probs=61.7
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChh
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e 90 (426)
++|+|.-. +-..|.-+..++.|+++ +..+.+....+ +.+ ..+|+|+|+||- |..+.+
T Consensus 234 ~~iavA~D------~AF~FyY~enl~~L~~~-aelv~fSPl~~-~~l----p~~D~l~lpGG~---~e~~~~-------- 290 (433)
T PRK13896 234 PTVAVARD------AAFCFRYPATIERLRER-ADVVTFSPVAG-DPL----PDCDGVYLPGGY---PELHAD-------- 290 (433)
T ss_pred CeEEEEEc------CccceeCHHHHHHHHhc-CcEEEEcCCCC-CCC----CCCCEEEeCCCc---hhhHHH--------
Confidence 46776432 22356666778999999 88887765433 233 358999999994 444332
Q ss_pred HHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHh
Q 014368 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (426)
Q Consensus 91 ~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~ 141 (426)
+++. ... ...++.+.+.+.||+|||.|+|+|+..+
T Consensus 291 ---~L~~------------n~~-~~~i~~~~~~G~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 291 ---ALAD------------SPA-LDELADRAADGLPVLGECGGLMALAESL 325 (433)
T ss_pred ---HHHh------------CCc-HHHHHHHHHCCCcEEEEehHHHHhhccc
Confidence 2211 001 2466777789999999999999998876
No 105
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=97.89 E-value=2.7e-05 Score=74.12 Aligned_cols=99 Identities=19% Similarity=0.174 Sum_probs=64.6
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHC-CCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY-GAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLS 88 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~-Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~ 88 (426)
.++|++++.-+.... ....++.+++... |+.++.+.... .++..+.+..+|+|+|+|| +...
T Consensus 31 ~~~i~~IptAs~~~~----~~~~~~~~a~~~l~G~~~~~~~~~~-~~~~~~~l~~ad~I~l~GG---~~~~--------- 93 (212)
T cd03146 31 RPKVLFVPTASGDRD----EYTARFYAAFESLRGVEVSHLHLFD-TEDPLDALLEADVIYVGGG---NTFN--------- 93 (212)
T ss_pred CCeEEEECCCCCCHH----HHHHHHHHHHhhccCcEEEEEeccC-cccHHHHHhcCCEEEECCc---hHHH---------
Confidence 478888876544211 1233467788889 99888776432 2333455678999999998 2211
Q ss_pred hhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 89 ~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
-+.++++ .....+++.+.++++|++|||.|+|++...
T Consensus 94 --~~~~l~~-------------~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 94 --LLAQWRE-------------HGLDAILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred --HHHHHHH-------------cCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 1223332 123456777778899999999999999764
No 106
>PRK00784 cobyric acid synthase; Provisional
Probab=97.82 E-value=2.9e-05 Score=82.81 Aligned_cols=76 Identities=22% Similarity=0.189 Sum_probs=53.2
Q ss_pred HHHHHHHH-CCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhH
Q 014368 33 YHLDLIVG-YGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (426)
Q Consensus 33 ~yl~~l~~-~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~ 111 (426)
.-++.|.. +|+.++.+... +. +..+|||+|+||. |..+. ++|+++ .
T Consensus 266 ~nl~~l~~~~g~~v~~~s~~---~~----l~~~d~lilpGg~---~~~~~----------~~~~~~-------------~ 312 (488)
T PRK00784 266 TDFDPLRAEPGVDVRYVRPG---EP----LPDADLVILPGSK---NTIAD----------LAWLRE-------------S 312 (488)
T ss_pred cChHHHhhcCCCeEEEECCc---cc----cccCCEEEECCcc---chHHH----------HHHHHH-------------c
Confidence 35778887 89999888642 23 3468999999995 22221 123322 1
Q ss_pred HHHHHHHHHHHcCCCEEEEehHHHHHHHHh
Q 014368 112 IELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (426)
Q Consensus 112 ~e~~lir~ale~~iPILGIClG~QlLava~ 141 (426)
-....++.+.+.++||||||.|+|+|+..+
T Consensus 313 ~l~~~i~~~~~~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 313 GWDEAIRAHARRGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred CHHHHHHHHHHcCCeEEEECHHHHHHhhhc
Confidence 123566777888999999999999999876
No 107
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.81 E-value=7.1e-05 Score=59.87 Aligned_cols=78 Identities=27% Similarity=0.338 Sum_probs=53.8
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhH
Q 014368 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (426)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~ 111 (426)
....+.+...|..+.+++..............+|+||++||....+... ++.
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~----------------------------~~~ 66 (115)
T cd01653 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA----------------------------RDE 66 (115)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhc----------------------------cCH
Confidence 4567788999999999987554221112245799999999964221100 112
Q ss_pred HHHHHHHHHHHcCCCEEEEehHHHHH
Q 014368 112 IELRLAKLCLERNIPYLGICRGSQVL 137 (426)
Q Consensus 112 ~e~~lir~ale~~iPILGIClG~QlL 137 (426)
..++.++.+.++++|++|+|.|+|++
T Consensus 67 ~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 67 ALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred HHHHHHHHHHHcCCEEEEECchhHhH
Confidence 23567777788899999999999999
No 108
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=97.66 E-value=0.00027 Score=78.17 Aligned_cols=205 Identities=20% Similarity=0.237 Sum_probs=106.9
Q ss_pred CCCCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCC
Q 014368 7 SVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSN 86 (426)
Q Consensus 7 ~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~ 86 (426)
+...|+|.|+--..+... ..-.-++..+|..++-|.-. |.-.=...++.+-||++|||- .|++....
T Consensus 1055 ~s~~PkVAilREeGvNg~-------rEMa~af~~AgF~~~DVtmt-DlL~G~~~ld~frGlaf~GGF-----SYaDvLgS 1121 (1320)
T KOG1907|consen 1055 SSTAPKVAILREEGVNGD-------REMAAAFYAAGFETVDVTMT-DLLAGRHHLDDFRGLAFCGGF-----SYADVLGS 1121 (1320)
T ss_pred hcCCCceEEeeccccccH-------HHHHHHHHHcCCceeeeeee-hhhcCceeHhHhcceeeecCc-----chHhhhcc
Confidence 356789888743322111 11233577899998876532 211112345679999999994 35442210
Q ss_pred CChhHHHHHHhhcCCCccccchhhHHHHHHHHHHH-HcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceee
Q 014368 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCL-ERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVH 165 (426)
Q Consensus 87 ~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~al-e~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H 165 (426)
...|+.......-.+.-..++. ..+.=-||||.|.|+|+..- -+.. +.+.- ......|
T Consensus 1122 -------------akGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg--~i~p----~~~~~--p~~~l~~ 1180 (1320)
T KOG1907|consen 1122 -------------AKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSRLG--WIGP----EVGKW--PDVFLDH 1180 (1320)
T ss_pred -------------ccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHHhc--ccCc----cccCC--Cceeeec
Confidence 0011111000000111122222 34567799999999998741 1111 11100 1112335
Q ss_pred cccCCCCCceEEEEEecC-CcccccccccccccceEEEEecccccch---------hcc-CCCeEEEE------------
Q 014368 166 IDYDNYDGHRHVVKVVKD-TPLHDWFKDSLEEEKMEIWVNSYHHQGV---------KRL-AQRFVPMA------------ 222 (426)
Q Consensus 166 ~~~~~~~g~~~~V~v~~~-s~L~~~~~~~~~~~~~~~~Vns~H~~~V---------~~L-p~g~~vlA------------ 222 (426)
.-..++++.+-.|++..+ |.+.+.+..+ .+.++..|+.+= +.+ .+++..+-
T Consensus 1181 Nes~rfE~r~~~vkI~~~~SIml~gM~gs------~LgvwvAHGEGRa~f~~e~~~e~~~~~gl~~iryvdd~g~~te~y 1254 (1320)
T KOG1907|consen 1181 NESGRFECRFGMVKIESNVSIMLSGMAGS------VLGVWVAHGEGRATFRSEQNLEHLKKEGLVCIRYVDDYGNVTELY 1254 (1320)
T ss_pred ccccceeeeEEEEEeCCCchhhhccccCC------ceeeEEEecccceecCcHHHHHHHhhcCeeEEEEecCCCCEeeec
Confidence 444556667777888644 3444445443 456666676541 111 12333322
Q ss_pred -EeCCC---eEEEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 014368 223 -FAPDG---LIEGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (426)
Q Consensus 223 -~s~dG---~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (426)
++++| -|+||..++ ...+++.-||||...
T Consensus 1255 PfNpNGS~~gIAgicSpd-------GRhLAMMPHpER~~l 1287 (1320)
T KOG1907|consen 1255 PFNPNGSPDGIAGICSPD-------GRHLAMMPHPERVFL 1287 (1320)
T ss_pred ccCCCCCcccceeeeCCC-------CCeeeccCCchheee
Confidence 33445 578888887 678999999999754
No 109
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.58 E-value=0.00022 Score=54.47 Aligned_cols=77 Identities=27% Similarity=0.314 Sum_probs=51.0
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHH
Q 014368 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (426)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~ 112 (426)
.+.+.+...|..+.+++.......-......+|+||++||++...... ++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~----------------------------~~~~ 67 (92)
T cd03128 16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA----------------------------WDEA 67 (92)
T ss_pred cHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhc----------------------------cCHH
Confidence 456778888988888887554321112245799999999975321110 1122
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHH
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVL 137 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlL 137 (426)
..+.+....++++|++|+|.|+|++
T Consensus 68 ~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 68 LLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred HHHHHHHHHHcCCEEEEEecccccC
Confidence 3456666677789999999999864
No 110
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.27 E-value=0.00021 Score=76.08 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCCEEEEehHHHHHHHHh
Q 014368 114 LRLAKLCLERNIPYLGICRGSQVLNVAC 141 (426)
Q Consensus 114 ~~lir~ale~~iPILGIClG~QlLava~ 141 (426)
...++.+.+.+.||||||.|||+|...+
T Consensus 309 ~~~i~~~~~~G~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 309 AEEILDFAKEGGIVIGICGGYQMLGKEL 336 (475)
T ss_pred HHHHHHHHHcCCcEEEEcHHHHHhhhhh
Confidence 3566777788999999999999998865
No 111
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=97.21 E-value=0.0036 Score=60.07 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHcCCCEEEEehHHHHHHHHh
Q 014368 110 DSIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (426)
Q Consensus 110 d~~e~~lir~ale~~iPILGIClG~QlLava~ 141 (426)
+....++++.+.+.++||.+||-|-++|..+.
T Consensus 114 ~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 114 NPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred CHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 34457899999999999999999999998876
No 112
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.10 E-value=0.0016 Score=59.84 Aligned_cols=28 Identities=36% Similarity=0.581 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava 140 (426)
...+++.+.++++||.|||.|.++|+.+
T Consensus 97 ~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 97 VLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 3568888889999999999999999875
No 113
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=97.04 E-value=0.0015 Score=63.50 Aligned_cols=101 Identities=14% Similarity=0.229 Sum_probs=65.9
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
.|+|+++..-+.. ....+|+ ..+-+++.+.|+.++.+... ++..+.+..+|+|+++||.. ..+
T Consensus 31 ~~~v~fIPtAs~~-~~~~~y~-~~~~~af~~lG~~v~~l~~~---~d~~~~l~~ad~I~v~GGnt---~~l--------- 93 (233)
T PRK05282 31 RRKAVFIPYAGVT-QSWDDYT-AKVAEALAPLGIEVTGIHRV---ADPVAAIENAEAIFVGGGNT---FQL--------- 93 (233)
T ss_pred CCeEEEECCCCCC-CCHHHHH-HHHHHHHHHCCCEEEEeccc---hhhHHHHhcCCEEEECCccH---HHH---------
Confidence 4788888654322 2233454 34677888999998877643 23345567899999999942 111
Q ss_pred hHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhC
Q 014368 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACG 142 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~G 142 (426)
+..++ +.-....++.++++++|+.|+|-|.-+++...+
T Consensus 94 --~~~l~-------------~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 94 --LKQLY-------------ERGLLAPIREAVKNGTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred --HHHHH-------------HCCcHHHHHHHHHCCCEEEEECHHHHhhhccce
Confidence 11222 122345778888999999999999988766544
No 114
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=96.90 E-value=0.0042 Score=65.78 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=44.2
Q ss_pred CCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHH
Q 014368 42 GAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCL 121 (426)
Q Consensus 42 Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~al 121 (426)
+..+..++...+ +..+|.|||||.-+ +..+|.|+|+. -++.++.+++.
T Consensus 276 ~v~v~~v~~~~~-------l~~~dlvIlPGsk~-------------t~~DL~~lr~~------------g~d~~i~~~~~ 323 (486)
T COG1492 276 DVRVRFVKPGSD-------LRDADLVILPGSKN-------------TIADLKILREG------------GMDEKILEYAR 323 (486)
T ss_pred CeEEEEeccCCC-------CCCCCEEEeCCCcc-------------cHHHHHHHHHc------------CHHHHHHHHHh
Confidence 777777775433 23489999999843 12356777642 12334555544
Q ss_pred HcCCCEEEEehHHHHHHHHh
Q 014368 122 ERNIPYLGICRGSQVLNVAC 141 (426)
Q Consensus 122 e~~iPILGIClG~QlLava~ 141 (426)
.+.||+|||.|||+|....
T Consensus 324 -~~~~viGICGG~QmLG~~i 342 (486)
T COG1492 324 -KGGDVIGICGGYQMLGRRL 342 (486)
T ss_pred -CCCCEEEEcchHHhhhhhh
Confidence 5899999999999995543
No 115
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=96.85 E-value=0.016 Score=60.63 Aligned_cols=197 Identities=19% Similarity=0.239 Sum_probs=111.0
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChh
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e 90 (426)
++|+|.... -..|--+..++.|+.+||+++.+.+..| +++++ .+|+|.|+|| -|..|.++-
T Consensus 246 ~rIAVA~D~------AF~FyY~~nl~~Lr~~GAelv~FSPL~D-~~lP~---~~D~vYlgGG---YPElfA~~L------ 306 (451)
T COG1797 246 VRIAVARDA------AFNFYYPENLELLREAGAELVFFSPLAD-EELPP---DVDAVYLGGG---YPELFAEEL------ 306 (451)
T ss_pred ceEEEEecc------hhccccHHHHHHHHHCCCEEEEeCCcCC-CCCCC---CCCEEEeCCC---ChHHHHHHH------
Confidence 367775432 1345556678999999999998876554 23332 4999999999 576665432
Q ss_pred HHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHh---CCcccccchhhhcccCCCCcceeecc
Q 014368 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC---GGTLYQDIEKEVSRKCPENQRVVHID 167 (426)
Q Consensus 91 ~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~---GG~l~~~~~~e~g~~~~~~~~v~H~~ 167 (426)
+ .....+..|+.+.+.|+||+|=|.|+-.|+..+ .|..+.+.. -++....-..++.+.
T Consensus 307 --~---------------~n~~~~~~i~~~~~~G~piyaECGGlMYL~~~le~~~G~~~~M~G-vlp~~~~m~~Rl~~l- 367 (451)
T COG1797 307 --S---------------ANESMRRAIKAFAAAGKPIYAECGGLMYLGESLEDADGDTYEMVG-VLPGSTRMTKRLQAL- 367 (451)
T ss_pred --h---------------hCHHHHHHHHHHHHcCCceEEecccceeehhheeccCCceeeeee-eeccchhhhhhhhcc-
Confidence 1 112235678888899999999999999888766 334444331 111000000111122
Q ss_pred cCCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEe--CCCeE---EEEEeCCCCCCCC
Q 014368 168 YDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFA--PDGLI---EGFYDPDAYNPAE 242 (426)
Q Consensus 168 ~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s--~dG~V---eaie~~~~~~~~~ 242 (426)
+...+....++++.. -+. .+.-+-+|.-.+...++ .++...- .+|.. .++..
T Consensus 368 ------GY~~~~~~~d~~~~~-~G~-------~irGHEFHyS~~~~~~~-~~~a~~~~~g~g~~~~~~G~~~-------- 424 (451)
T COG1797 368 ------GYREAEAVDDTLLLR-AGE-------KIRGHEFHYSRLITEED-AEPAFRVRRGDGIDNGRDGYRS-------- 424 (451)
T ss_pred ------ceeEEEecCCccccc-CCc-------eeeeeeeeeeecccCCc-CceeeeeecccCccccccceee--------
Confidence 244555555554432 122 45555566655533332 3333222 22322 24443
Q ss_pred CCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHH
Q 014368 243 GKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAV 280 (426)
Q Consensus 243 ~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av 280 (426)
.+++|.=.|--..+. ..+..+|+++|
T Consensus 425 -gnv~asY~H~H~~s~-----------~~~~~~~v~~~ 450 (451)
T COG1797 425 -GNVLASYLHLHFASN-----------PAFAARFVAAA 450 (451)
T ss_pred -CCeEEEEEeeecccC-----------HHHHHHHHHhh
Confidence 357777666544332 47889998876
No 116
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=96.66 E-value=0.0012 Score=57.22 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCCCEEEEehHHHHH
Q 014368 114 LRLAKLCLERNIPYLGICRGSQVL 137 (426)
Q Consensus 114 ~~lir~ale~~iPILGIClG~QlL 137 (426)
.+.++...+.+.|+||||+|.=+.
T Consensus 67 ~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 67 NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred cHHHHHHHHCCCcEEEEecCccce
Confidence 356677778899999999998665
No 117
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=96.65 E-value=0.014 Score=55.13 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=64.9
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC--ChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS--GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNL 87 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~--~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~ 87 (426)
.|+|+++..-+... ....+.|.+++.+.|+..+.++... +...+.+.+..+|+|+|+|| |+..+-
T Consensus 29 ~~~i~~iptA~~~~----~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG---~~~~~~------ 95 (210)
T cd03129 29 GARVLFIPTASGDR----DEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGG---NQLRLL------ 95 (210)
T ss_pred CCeEEEEeCCCCCh----HHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCC---cHHHHH------
Confidence 58888887554321 1223567888999999988776532 33556667788999999999 332211
Q ss_pred ChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 88 SPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 88 ~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
..++ +.-....+.....++.|+.|+|-|..++...
T Consensus 96 -----~~l~-------------~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 96 -----SVLR-------------ETPLLDAILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred -----HHHH-------------hCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence 1111 1111234444445899999999999999875
No 118
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=96.46 E-value=0.01 Score=56.89 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEehHHHHHHHHhC
Q 014368 111 SIELRLAKLCLERNIPYLGICRGSQVLNVACG 142 (426)
Q Consensus 111 ~~e~~lir~ale~~iPILGIClG~QlLava~G 142 (426)
.....+++.+.++++||.+||-|-++|+.+.+
T Consensus 112 ~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 112 PEVERLVREFHQAGKPIGAICIAPALAAKILG 143 (213)
T ss_pred HHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence 34578899999999999999999999988764
No 119
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=96.39 E-value=0.015 Score=52.30 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava 140 (426)
.+.+++++.++++||.|||-|.++|+.+
T Consensus 83 ~~~~l~~~~~~~~~i~~ic~G~~~La~a 110 (165)
T cd03134 83 AVAFVRAFAEAGKPVAAICHGPWVLISA 110 (165)
T ss_pred HHHHHHHHHHcCCeEEEEchHHHHHHhc
Confidence 4678888889999999999999999864
No 120
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=96.38 E-value=0.059 Score=51.73 Aligned_cols=75 Identities=27% Similarity=0.272 Sum_probs=47.9
Q ss_pred HHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHH
Q 014368 38 IVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLA 117 (426)
Q Consensus 38 l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~li 117 (426)
.+.+|+.+.|++.+.. +...+ +.+|-+++.||.| |.+. |-..|- ..-..-+
T Consensus 30 a~~rgi~v~i~~vsl~-d~~~~--~~~Dl~~~GGgqD-----~eQ~-----------i~t~d~----------~~k~~~l 80 (250)
T COG3442 30 AEKRGIKVEIVEVSLT-DTFPD--DSYDLYFLGGGQD-----YEQE-----------IATRDL----------LTKKEGL 80 (250)
T ss_pred HHhcCCceEEEEeecC-CCCCc--ccccEEEecCchH-----HHHH-----------HHhhhh----------ccccHHH
Confidence 5568888887775432 22222 4689888888864 2221 111110 1112467
Q ss_pred HHHHHcCCCEEEEehHHHHHHHHh
Q 014368 118 KLCLERNIPYLGICRGSQVLNVAC 141 (426)
Q Consensus 118 r~ale~~iPILGIClG~QlLava~ 141 (426)
+.+++.++|+|.||.|.|+|...+
T Consensus 81 ~~~i~~g~p~laiCgg~QlLG~yY 104 (250)
T COG3442 81 KDAIENGKPVLAICGGYQLLGQYY 104 (250)
T ss_pred HHHHhcCCcEEEEccchhhcccee
Confidence 888999999999999999997754
No 121
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=96.25 E-value=0.021 Score=55.28 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 111 SIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 111 ~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
....++++.+.+.++||-.||-|-++|..+
T Consensus 114 ~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 114 TNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred HHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 345678999999999999999999999876
No 122
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=96.03 E-value=0.022 Score=50.14 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=57.0
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh-----------h-hhhhh-cCCCCEEEECCCCCCCCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-----------H-MLLDS-FEPIHGVLLCEGEDIDPS 78 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-----------~-~l~~~-le~~DGVILsGG~didp~ 78 (426)
+|+|+......... -....+.+..+|..+.++..+... + .+.+. .+.+|+||++||.+....
T Consensus 3 ~v~ill~~g~~~~e-----~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~ 77 (142)
T cd03132 3 KVGILVADGVDAAE-----LSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFA 77 (142)
T ss_pred EEEEEEcCCcCHHH-----HHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHH
Confidence 56666544321111 223466778888888777543211 1 11111 124899999999532100
Q ss_pred cccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 79 LYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 79 ~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
+. .+.....+++.+.++++||.+||-|-.+|+.+
T Consensus 78 -~~---------------------------~~~~l~~~l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 78 -LA---------------------------PSGRALHFVTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred -Hc---------------------------cChHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence 00 11223567788888999999999999999873
No 123
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=95.97 E-value=0.011 Score=53.35 Aligned_cols=28 Identities=36% Similarity=0.621 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava 140 (426)
...+++++.++++|+.|||-|.++|+.+
T Consensus 81 l~~~l~~~~~~~~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 81 AVRLVREFVEKGKPVAAICHGPQLLISA 108 (166)
T ss_pred HHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence 3567888888999999999999999874
No 124
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=95.86 E-value=0.052 Score=50.44 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava 140 (426)
...+++.+.+++++|.+||-|..+|...
T Consensus 88 l~~~L~~~~~~g~~v~aic~G~~~ll~~ 115 (196)
T PRK11574 88 LVETVRQFHRSGRIVAAICAAPATVLVP 115 (196)
T ss_pred HHHHHHHHHHCCCEEEEECHhHHHHHHh
Confidence 3567888889999999999999976543
No 125
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=95.84 E-value=0.036 Score=53.73 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=37.3
Q ss_pred CCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 62 EPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 62 e~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
+.+|+|+||||.. .++ |...+....++++.+.++++||-.||-|-++|..+
T Consensus 95 ~dYDav~iPGG~g---~~~-------------------------dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHG---ALI-------------------------GIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCC---Chh-------------------------hcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 5799999999942 111 11123345678899999999999999999877653
No 126
>PRK04155 chaperone protein HchA; Provisional
Probab=95.81 E-value=0.038 Score=55.30 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=37.4
Q ss_pred cCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHH
Q 014368 61 FEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNV 139 (426)
Q Consensus 61 le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLav 139 (426)
.+.+|+||||||.. ..+ +...+....++++++.++++||..||-|-++|..
T Consensus 145 ~~dYDaV~iPGG~g---~~~-------------------------dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~ 195 (287)
T PRK04155 145 DSDYAAVFIPGGHG---ALI-------------------------GLPESEDVAAALQWALDNDRFIITLCHGPAALLA 195 (287)
T ss_pred cccccEEEECCCCc---hHH-------------------------HHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHH
Confidence 35899999999942 111 1112234567899999999999999999987765
No 127
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=95.55 E-value=0.063 Score=49.24 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava 140 (426)
.++.++.+.+++++|.+||-|.++|+.+
T Consensus 85 l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 85 LLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred HHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 4567788888899999999999999874
No 128
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=95.29 E-value=0.81 Score=47.45 Aligned_cols=51 Identities=27% Similarity=0.417 Sum_probs=35.6
Q ss_pred cCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHH
Q 014368 61 FEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNV 139 (426)
Q Consensus 61 le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLav 139 (426)
...++-+|+|||.|. | |. +.+.+. -...|+..+++|--+||||.|.-.-+.
T Consensus 47 ~~~~~LlV~PGG~d~-~--y~--------------~~l~~~-----------g~~~Ir~fV~~GG~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 47 QSKCALLVMPGGADL-P--YC--------------RSLNGE-----------GNRRIRQFVENGGGYLGICAGAYYASS 97 (367)
T ss_pred ccCCcEEEECCCcch-H--HH--------------HhhChH-----------HHHHHHHHHHcCCcEEEECcchhhhcc
Confidence 356899999999764 1 21 111111 146788888899999999999877665
No 129
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=95.18 E-value=0.014 Score=51.86 Aligned_cols=30 Identities=37% Similarity=0.449 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 111 SIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 111 ~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
.....+++.+.+.++||.+||-|-.+|..+
T Consensus 58 ~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 58 KDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp HHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred HHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 445789999999999999999999888765
No 130
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=95.11 E-value=0.062 Score=52.65 Aligned_cols=109 Identities=17% Similarity=0.058 Sum_probs=61.4
Q ss_pred HHHHHHHcCCCEEEEehHHHHHHHHh-CCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEecCCcccccccccc
Q 014368 116 LAKLCLERNIPYLGICRGSQVLNVAC-GGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSL 194 (426)
Q Consensus 116 lir~ale~~iPILGIClG~QlLava~-GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~~~~~ 194 (426)
++.+...+---.|=||.|.|.---.+ |-.-+....+-+| ....-.+.++++|+.+|.+
T Consensus 127 I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~~Kl~G-------------------Vy~h~~l~p~~~l~rGfdd-- 185 (307)
T COG1897 127 IFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLPEKLSG-------------------VYKHDILSPHSLLTRGFDD-- 185 (307)
T ss_pred HHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccchhhhc-------------------eeeccccCccchhhccCCc--
Confidence 44444444467889999999765554 5443332222222 1111124567888888876
Q ss_pred cccceEEEEe-ccccc----chhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 014368 195 EEEKMEIWVN-SYHHQ----GVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (426)
Q Consensus 195 ~~~~~~~~Vn-s~H~~----~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (426)
.|.+. |-|.+ .+... ++++|++.+...-+-.+..++ ..-+=+--|||+...
T Consensus 186 -----~f~~PhSR~t~~~~e~i~~~-~~LeIL~es~e~G~~l~a~k~-------~r~ifv~gH~EYD~~ 241 (307)
T COG1897 186 -----SFLAPHSRYTDVPKEDILAV-PDLEILAESKEAGVYLLASKD-------GRNIFVTGHPEYDAT 241 (307)
T ss_pred -----cccCcccccccCCHHHHhhC-CCceeeecccccceEEEecCC-------CCeEEEeCCcchhhh
Confidence 33333 22322 12223 469999998665555555555 334446679999765
No 131
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=94.85 E-value=0.071 Score=50.98 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=64.4
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEE-EEcCCC----ChhhhhhhcCCCCEEEECCCCCCCCCcccccC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPA-IVPRVS----GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAET 84 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~v-ivp~~~----~~~~l~~~le~~DGVILsGG~didp~~y~~~~ 84 (426)
.|+|+++...+... +...+.|.+.+.+.|+..+ .+.... +...+.+.+..+|+|+++|| |+..+-
T Consensus 29 ~~~i~~iptA~~~~----~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG---~~~~~~--- 98 (217)
T cd03145 29 GARIVVIPAASEEP----AEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGG---DQLRIT--- 98 (217)
T ss_pred CCcEEEEeCCCcCh----hHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCC---cHHHHH---
Confidence 47888887654321 2224557778888998643 443321 23445566788999999999 433221
Q ss_pred CCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 85 SNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 85 ~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
+.+ ++.-....++.+.+++.|+.|+--|.-++...
T Consensus 99 --------~~l-------------~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 99 --------SAL-------------GGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred --------HHH-------------cCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence 111 12223467888888999999999999888654
No 132
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=94.29 E-value=0.11 Score=47.28 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava 140 (426)
..++++++.+++++|.+||-|.++|+.+
T Consensus 80 l~~~l~~~~~~~~~i~aic~G~~~La~a 107 (170)
T cd03140 80 LAGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred HHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence 3567888888999999999999999884
No 133
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=94.11 E-value=0.073 Score=50.93 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava 140 (426)
...+++.+.+++++|.+||-|-.+|+.+
T Consensus 112 l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 112 LQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred HHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 4678888899999999999999999875
No 134
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=94.08 E-value=0.11 Score=50.91 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=63.9
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCE-EEEEcCCC----ChhhhhhhcCCCCEEEECCCCCCCCCcccccC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAV-PAIVPRVS----GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAET 84 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~-~vivp~~~----~~~~l~~~le~~DGVILsGG~didp~~y~~~~ 84 (426)
.|+|+|+..-+.. .....+.|.+++.++|+. +.++.... ...++.+.+...|+|+++|| |...+-
T Consensus 28 ~~rI~~iptAS~~----~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GG---nq~~l~--- 97 (250)
T TIGR02069 28 DAIIVIITSASEE----PREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGG---DQLRIT--- 97 (250)
T ss_pred CceEEEEeCCCCC----hHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCC---CHHHHH---
Confidence 4789998754321 122345688899999984 44555321 22334556788999999999 332211
Q ss_pred CCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHH
Q 014368 85 SNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNV 139 (426)
Q Consensus 85 ~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLav 139 (426)
+++ ++.-....++.+.+++.|+.|+--|.-+|+.
T Consensus 98 --------~~l-------------~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~ 131 (250)
T TIGR02069 98 --------SLL-------------GDTPLLDRLRKRVHEGIILGGTSAGAAVMSD 131 (250)
T ss_pred --------HHH-------------cCCcHHHHHHHHHHcCCeEEEccHHHHhccc
Confidence 111 1222346788888899999999999988854
No 135
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=93.97 E-value=0.08 Score=47.16 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava 140 (426)
.+.+++.+.+++++|.+||-|..+|+.+
T Consensus 82 l~~~l~~~~~~~~~i~~ic~g~~~La~a 109 (163)
T cd03135 82 LIKLLKEFNAKGKLIAAICAAPAVLAKA 109 (163)
T ss_pred HHHHHHHHHHcCCEEEEEchhHHHHHHc
Confidence 4677888888999999999999999985
No 136
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=93.80 E-value=0.06 Score=48.47 Aligned_cols=77 Identities=10% Similarity=0.085 Sum_probs=52.4
Q ss_pred HHHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhH
Q 014368 33 YHLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (426)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~-~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~ 111 (426)
.+.+++.+.|+.+..++... ..+++.+.+..+|+|+|+|| |+..+- ..+ ++.
T Consensus 4 ~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG---~~~~l~-----------~~l-------------~~t 56 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGG---DTFRLL-----------RQL-------------KET 56 (154)
T ss_dssp HHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S----HHHHH-----------HHH-------------HHT
T ss_pred HHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCC---CHHHHH-----------HHH-------------HhC
Confidence 45678999999988888654 34566677778999999999 443221 122 222
Q ss_pred HHHHHHHHHHHcCCCEEEEehHHHH
Q 014368 112 IELRLAKLCLERNIPYLGICRGSQV 136 (426)
Q Consensus 112 ~e~~lir~ale~~iPILGIClG~Ql 136 (426)
-....++.+..+|.|+.|+--|.-+
T Consensus 57 ~l~~~i~~~~~~G~vi~G~SAGA~i 81 (154)
T PF03575_consen 57 GLDEAIREAYRKGGVIIGTSAGAMI 81 (154)
T ss_dssp THHHHHHHHHHTTSEEEEETHHHHC
T ss_pred CHHHHHHHHHHCCCEEEEEChHHhh
Confidence 2456888888899999999999844
No 137
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=93.40 E-value=0.11 Score=47.81 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=25.0
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava 140 (426)
.+.+++++.+.++||..||-|-++|..+
T Consensus 88 ~~~~v~~~~~~~k~vaaIC~g~~~L~~a 115 (188)
T COG0693 88 LLAFVRDFYANGKPVAAICHGPAVLAAA 115 (188)
T ss_pred HHHHHHHHHHcCCEEEEEChhHHHHhcc
Confidence 4678999999999999999999999764
No 138
>PRK11249 katE hydroperoxidase II; Provisional
Probab=93.11 E-value=0.33 Score=54.59 Aligned_cols=97 Identities=9% Similarity=-0.009 Sum_probs=60.3
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCC-----------h-hhhhhh-cCCCCEEEECCCCCCCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG-----------V-HMLLDS-FEPIHGVLLCEGEDIDP 77 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~-----------~-~~l~~~-le~~DGVILsGG~didp 77 (426)
.+|+|+......... -....+++...|+.+.+|..... . ..+... ...+|+|+|+||... +
T Consensus 598 RKIaILVaDG~d~~e-----v~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~-~ 671 (752)
T PRK11249 598 RKVAILLNDGVDAAD-----LLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKAN-I 671 (752)
T ss_pred cEEEEEecCCCCHHH-----HHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchh-H
Confidence 467777655432222 12456788899999988754211 0 111111 114899999999521 1
Q ss_pred CcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 78 SLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 78 ~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
.. ...+...+.+++.+.+.++||.+||-|.++|..+
T Consensus 672 ~~---------------------------L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 672 AD---------------------------LADNGDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred HH---------------------------HhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 00 0112334678889999999999999999999863
No 139
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=93.08 E-value=0.16 Score=46.86 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava 140 (426)
.+.+++.+.+++++|.+||-|..+|+.+
T Consensus 93 l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 93 LIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred HHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 4677888888999999999999999873
No 140
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=92.47 E-value=0.44 Score=43.33 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava 140 (426)
...+++.+.++++||.+||-|.-+|+.+
T Consensus 83 ~~~~l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 83 LLDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred HHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence 3567777888899999999999888763
No 141
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=92.25 E-value=0.22 Score=45.19 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava 140 (426)
...+++.+.++++||.+||-|-.+|+.+
T Consensus 85 l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 85 LLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred HHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 4567888888999999999999999875
No 142
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=90.46 E-value=0.42 Score=43.81 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava 140 (426)
.+.+++.+.++++.|.+||-|..+|+.+
T Consensus 84 ~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 84 LLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred HHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 4567778788899999999999999863
No 143
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.83 E-value=1.1 Score=45.31 Aligned_cols=89 Identities=21% Similarity=0.224 Sum_probs=53.6
Q ss_pred CCCCCCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh-----------------hhhhhhcCCCCEE
Q 014368 5 DLSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-----------------HMLLDSFEPIHGV 67 (426)
Q Consensus 5 ~~~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-----------------~~l~~~le~~DGV 67 (426)
|++.+ .+|||+.++..... .-+....++|+.+.|..+++....... .......+.+|-+
T Consensus 1 ~~~~~-~~I~iv~~~~~~~~---~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (306)
T PRK03372 1 DMTAS-RRVLLVAHTGRDEA---TEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELV 76 (306)
T ss_pred CCCCc-cEEEEEecCCCHHH---HHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEE
Confidence 45555 46999987643211 122345677888999988876432110 0001222357888
Q ss_pred EECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHH
Q 014368 68 LLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (426)
Q Consensus 68 ILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~ 134 (426)
|.-|| | ...+..++.+...++|||||=.|.
T Consensus 77 i~lGG---D----------------------------------GT~L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 77 LVLGG---D----------------------------------GTILRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred EEEcC---C----------------------------------HHHHHHHHHhccCCCcEEEEecCC
Confidence 88888 2 122456666666789999998875
No 144
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.09 E-value=1.4 Score=44.23 Aligned_cols=85 Identities=16% Similarity=0.147 Sum_probs=51.9
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh--------hhhhhhcCCCCEEEECCCCCCCCCccc
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV--------HMLLDSFEPIHGVLLCEGEDIDPSLYE 81 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~--------~~l~~~le~~DGVILsGG~didp~~y~ 81 (426)
+.+|||+.++..... .-+.....+|+.+.|..+++-+..... ....+..+.+|-+|.-|| |
T Consensus 5 ~~~i~iv~~~~~~~~---~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGG---D----- 73 (292)
T PRK03378 5 FKCIGIVGHPRHPTA---LTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGG---D----- 73 (292)
T ss_pred CCEEEEEEeCCCHHH---HHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECC---c-----
Confidence 467999987643211 123444577888999888775432110 011222235899999999 2
Q ss_pred ccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHH
Q 014368 82 AETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (426)
Q Consensus 82 ~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~ 134 (426)
...+..++.+...++|||||=.|.
T Consensus 74 -----------------------------GT~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 74 -----------------------------GNMLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred -----------------------------HHHHHHHHHhcCCCCeEEEEECCC
Confidence 112445555555689999999887
No 145
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=88.58 E-value=1.1 Score=44.99 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=23.0
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava 140 (426)
...+++.+.+++++|.|||-|.-+|+.+
T Consensus 95 l~~~l~~~~~~~~~i~aic~g~~~La~a 122 (322)
T PRK09393 95 LLEALRAAHARGARLCSICSGVFVLAAA 122 (322)
T ss_pred HHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence 3567777778899999999999988763
No 146
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=88.19 E-value=0.46 Score=42.72 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 114 LRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 114 ~~lir~ale~~iPILGIClG~QlLava 140 (426)
+..++...+++.+|.|||-|..+|+.+
T Consensus 83 ~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 83 LDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp HHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred HHHhhhhhccceEEeeeehHHHHHhhh
Confidence 456666667889999999999999885
No 147
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.35 E-value=2.2 Score=42.84 Aligned_cols=88 Identities=19% Similarity=0.164 Sum_probs=53.6
Q ss_pred CCCCCCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh-h----hhhhhcCCCCEEEECCCCCCCCCc
Q 014368 5 DLSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-H----MLLDSFEPIHGVLLCEGEDIDPSL 79 (426)
Q Consensus 5 ~~~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-~----~l~~~le~~DGVILsGG~didp~~ 79 (426)
|++.+ .+|||+.++.. . ..-+....++|+.+.|..+++-+..... . ...+....+|-+|.-|| |
T Consensus 6 ~~~~~-~~i~ii~~~~~---~-~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGG---D--- 74 (287)
T PRK14077 6 DHKNI-KKIGLVTRPNV---S-LDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGG---D--- 74 (287)
T ss_pred ccccC-CEEEEEeCCcH---H-HHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECC---C---
Confidence 44444 47999988752 1 1223445677888999888875532110 0 11122235898888898 2
Q ss_pred ccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHH
Q 014368 80 YEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (426)
Q Consensus 80 y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~ 134 (426)
...+..++.+...++|||||=.|.
T Consensus 75 -------------------------------GT~L~aa~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 75 -------------------------------GTLISLCRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred -------------------------------HHHHHHHHHhcCCCCcEEEEeCCC
Confidence 112455666556789999998886
No 148
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=87.08 E-value=2.6 Score=37.55 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=41.7
Q ss_pred cEEEEEccCc-CC-------cccccccchhHHHHHHHHCCCEEEEEcCCC-Chhhh----hhhcCCCCEEEECCCCCCC
Q 014368 11 PRVLIVSRRS-VR-------KNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHML----LDSFEPIHGVLLCEGEDID 76 (426)
Q Consensus 11 P~igI~~~~~-~~-------~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l----~~~le~~DGVILsGG~did 76 (426)
|+++|++..+ .. .++..+.-......++.+.|+.+....... +.+.| .+.++.+|-||.+||.+..
T Consensus 1 prv~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~g 79 (144)
T TIGR00177 1 PRVAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGVG 79 (144)
T ss_pred CEEEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCCC
Confidence 6788876543 21 245556555556677999999887544332 33333 3445579999999996543
No 149
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.24 E-value=2.7 Score=42.48 Aligned_cols=84 Identities=18% Similarity=0.117 Sum_probs=50.2
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh-----------------hhhhhhcCCCCEEEECCCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-----------------HMLLDSFEPIHGVLLCEGE 73 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-----------------~~l~~~le~~DGVILsGG~ 73 (426)
.+|||+.+..... ..-+.....+|+.+.|..+++-+..... ....+..+.+|-+|.-||
T Consensus 2 ~~igiv~n~~~~~---~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGG- 77 (305)
T PRK02649 2 PKAGIIYNDGKPL---AVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIVLGG- 77 (305)
T ss_pred CEEEEEEcCCCHH---HHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEEEeC-
Confidence 4689998764321 1223445677899999988875421100 001122235788888888
Q ss_pred CCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHH
Q 014368 74 DIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (426)
Q Consensus 74 didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~ 134 (426)
| ...+..++.+...++|||||=.|.
T Consensus 78 --D----------------------------------GTlL~aar~~~~~~iPilGIN~G~ 102 (305)
T PRK02649 78 --D----------------------------------GTVLSAARQLAPCGIPLLTINTGH 102 (305)
T ss_pred --c----------------------------------HHHHHHHHHhcCCCCcEEEEeCCC
Confidence 2 112455666556789999998763
No 150
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=85.07 E-value=1.6 Score=41.95 Aligned_cols=74 Identities=11% Similarity=0.178 Sum_probs=53.1
Q ss_pred HHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHH
Q 014368 34 HLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (426)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~-~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~ 112 (426)
.-+++...|+.+.=++... +.+.|...+...|+|.+.||.-.+ =|..+|+ .-
T Consensus 54 ~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~--------------LL~~lke-------------~g 106 (224)
T COG3340 54 VRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFN--------------LLQELKE-------------TG 106 (224)
T ss_pred HHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHH--------------HHHHHHH-------------hC
Confidence 3457889999999888654 556777777889999999994211 0122222 22
Q ss_pred HHHHHHHHHHcCCCEEEEehHH
Q 014368 113 ELRLAKLCLERNIPYLGICRGS 134 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~ 134 (426)
...+|+...++|+|++|+--|.
T Consensus 107 ld~iIr~~vk~G~~YiG~SAGA 128 (224)
T COG3340 107 LDDIIRERVKAGTPYIGWSAGA 128 (224)
T ss_pred cHHHHHHHHHcCCceEEeccCc
Confidence 3578899999999999987665
No 151
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.00 E-value=4.2 Score=40.94 Aligned_cols=85 Identities=16% Similarity=0.123 Sum_probs=50.9
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCC---h------h----hhhhhcCCCCEEEECCCCCCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG---V------H----MLLDSFEPIHGVLLCEGEDID 76 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~---~------~----~l~~~le~~DGVILsGG~did 76 (426)
+.+|+|+.++..... .-+.....+|+.+.|..+++-+.... . . ...+....+|-+|.-|| |
T Consensus 5 ~~~i~ii~~~~~~~~---~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGG---D 78 (296)
T PRK04539 5 FHNIGIVTRPNTPDI---QDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGG---D 78 (296)
T ss_pred CCEEEEEecCCCHHH---HHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECC---c
Confidence 356999987643211 12234457789999998887542111 0 0 01112235788888888 2
Q ss_pred CCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHH
Q 014368 77 PSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (426)
Q Consensus 77 p~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~ 134 (426)
...+..++.+...++|||||=.|.
T Consensus 79 ----------------------------------GT~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 79 ----------------------------------GTFLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred ----------------------------------HHHHHHHHHhcccCCCEEEEecCC
Confidence 112455565556789999999886
No 152
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.89 E-value=3.3 Score=41.65 Aligned_cols=83 Identities=22% Similarity=0.150 Sum_probs=50.2
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh-----------h---hhhhhcCCCCEEEECCCCCCCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-----------H---MLLDSFEPIHGVLLCEGEDIDP 77 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-----------~---~l~~~le~~DGVILsGG~didp 77 (426)
+|||+.++..... .-+.....+|+.+.|..+++-+..... . ...+..+.+|-||.-|| |
T Consensus 2 ~igii~~~~~~~~---~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGG---D- 74 (292)
T PRK01911 2 KIAIFGQTYQESA---SPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGG---D- 74 (292)
T ss_pred EEEEEeCCCCHHH---HHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEECC---c-
Confidence 4888887643211 123344577899999988875421110 0 01122235898888898 2
Q ss_pred CcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHH
Q 014368 78 SLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (426)
Q Consensus 78 ~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~ 134 (426)
...+..++.+...++|||||=.|.
T Consensus 75 ---------------------------------GT~L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 75 ---------------------------------GTFLRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred ---------------------------------HHHHHHHHHhcCCCCCEEEEecCC
Confidence 112455666656789999999876
No 153
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=82.33 E-value=5.7 Score=38.69 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=46.9
Q ss_pred HHHHHHCCCEEEEEcCCCC----------------hhhhhhhcCCCCEEEECCC-CCCCCCcccccCCCCChhHHHHHHh
Q 014368 35 LDLIVGYGAVPAIVPRVSG----------------VHMLLDSFEPIHGVLLCEG-EDIDPSLYEAETSNLSPEELEEIRR 97 (426)
Q Consensus 35 l~~l~~~Ga~~vivp~~~~----------------~~~l~~~le~~DGVILsGG-~didp~~y~~~~~~~~~e~~~~ir~ 97 (426)
++.+++.|+.++++-.... ..+.. -+.||.|||||| ++ +.. |
T Consensus 25 ~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~--~~~yDviilPGG~~g--~e~-------L---------- 83 (247)
T KOG2764|consen 25 IDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVV--DSKYDVIILPGGLPG--AET-------L---------- 83 (247)
T ss_pred HHHHHhcCceEEEecCCCCcccccccceEecccccchhhc--cccccEEEecCCchh--hhh-------h----------
Confidence 5668888888776653211 11111 157999999999 32 110 0
Q ss_pred hcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhC
Q 014368 98 LHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACG 142 (426)
Q Consensus 98 ~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~G 142 (426)
..+...-++++...+.+++|..||-| |+++.+.+
T Consensus 84 ----------~~~~~v~~lvK~q~~~gkLIaaICaa-p~~al~a~ 117 (247)
T KOG2764|consen 84 ----------SECEKVVDLVKEQAESGKLIAAICAA-PLTALAAH 117 (247)
T ss_pred ----------hhcHHHHHHHHHHHhcCCeEEEeecc-hHHHHhhc
Confidence 11233457888888889999999987 44444443
No 154
>PRK01215 competence damage-inducible protein A; Provisional
Probab=82.29 E-value=3.6 Score=40.72 Aligned_cols=67 Identities=9% Similarity=0.013 Sum_probs=42.0
Q ss_pred CCcEEEEEccCc-CCcccccccchhHHHHHHHHCCCEEEEEcCC-CChh----hhhhhcCCCCEEEECCCCCC
Q 014368 9 ILPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVH----MLLDSFEPIHGVLLCEGEDI 75 (426)
Q Consensus 9 ~~P~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~----~l~~~le~~DGVILsGG~di 75 (426)
.+|+++|++-.+ .-.....+.-..+..+.+...|+.+..+... .+.+ .+.+.++.+|-||++||-+.
T Consensus 2 ~~~~v~Ii~~GdEll~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g~ 74 (264)
T PRK01215 2 DKWFAWIITIGNELLIGRTVNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLGP 74 (264)
T ss_pred CCCEEEEEEEChhccCCeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 478999987554 3344444443444556688999988644322 2333 34455667899999999653
No 155
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=81.73 E-value=5.3 Score=34.94 Aligned_cols=64 Identities=19% Similarity=0.196 Sum_probs=37.7
Q ss_pred EEEEccCc-CCcccccccchhHHHHHHHHCCCEEEEEcCCC-Chh----hhhhhcCCCCEEEECCCCCCC
Q 014368 13 VLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVH----MLLDSFEPIHGVLLCEGEDID 76 (426)
Q Consensus 13 igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~----~l~~~le~~DGVILsGG~did 76 (426)
++|++..+ ...++..+.-......++.+.|..+...+... +.+ .+.+.++.+|-||.+||.++.
T Consensus 2 v~ii~~G~El~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g 71 (133)
T cd00758 2 VAIVTVSDELSQGQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGVG 71 (133)
T ss_pred EEEEEeCccccCCceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCCC
Confidence 45554332 33344444444445567889998877554333 333 334445679999999997654
No 156
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=80.85 E-value=5.8 Score=39.81 Aligned_cols=84 Identities=12% Similarity=0.067 Sum_probs=50.0
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh--------hhhhhhcCCCCEEEECCCCCCCCCcccc
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV--------HMLLDSFEPIHGVLLCEGEDIDPSLYEA 82 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~--------~~l~~~le~~DGVILsGG~didp~~y~~ 82 (426)
..|+|+.+...... .-+....++++...|..+.+....... ....+..+.+|-||.-||-+
T Consensus 6 ~~v~iv~~~~~~~~---~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG-------- 74 (291)
T PRK02155 6 KTVALIGRYQTPGI---AEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDG-------- 74 (291)
T ss_pred CEEEEEecCCCHHH---HHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcH--------
Confidence 46899987643211 112345577888999887765421110 01122224589888888821
Q ss_pred cCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHH
Q 014368 83 ETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (426)
Q Consensus 83 ~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~ 134 (426)
..+..++.....++|+|||=.|.
T Consensus 75 -----------------------------t~l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 75 -----------------------------TMLGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred -----------------------------HHHHHHHHhcCCCCCEEEEcCCC
Confidence 12345555555789999998776
No 157
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=78.27 E-value=11 Score=34.57 Aligned_cols=68 Identities=18% Similarity=0.173 Sum_probs=40.0
Q ss_pred CCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC-Chhhhh----hh--cCCCCEEEECCCCCCCC
Q 014368 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLL----DS--FEPIHGVLLCEGEDIDP 77 (426)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~----~~--le~~DGVILsGG~didp 77 (426)
.+|+++|++..+... +..+.-+.....++.+.|+.++.+.... +.+.+. +. .+.+|-||.+||.++.+
T Consensus 3 ~~~rv~vit~~d~~~-~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~ 77 (163)
T TIGR02667 3 IPLRIAILTVSDTRT-EEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTG 77 (163)
T ss_pred CccEEEEEEEeCcCC-ccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCC
Confidence 468999987544221 2233333334556888999887544322 333333 33 24699999999976543
No 158
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=77.95 E-value=7.6 Score=39.43 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=42.9
Q ss_pred CcEEEEEccCc-CCcccccccchhHHHHHHHHCCCEEEEEcCC-CChhhhh----hhcCC-CCEEEECCCCCCCC
Q 014368 10 LPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLL----DSFEP-IHGVLLCEGEDIDP 77 (426)
Q Consensus 10 ~P~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~----~~le~-~DGVILsGG~didp 77 (426)
+|+++|++..+ .......+--......++.+.|+.++..... .+.+.+. +.++. +|-||++||.+++|
T Consensus 159 ~~rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGtsvg~ 233 (312)
T cd03522 159 PLRVGLIVTGSEVYGGRIEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGASVDP 233 (312)
T ss_pred CCEEEEEEcCCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcccCC
Confidence 58999998654 4444444444444556788999988744332 2333333 33444 89999999977665
No 159
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=77.90 E-value=4.7 Score=38.15 Aligned_cols=68 Identities=12% Similarity=0.045 Sum_probs=37.2
Q ss_pred CcEEEEEccCc-CCcccccccchhHHHHHHHHCCCE---E--EEEcCCCC--hhhhhhhcC--CCCEEEECCCCCCCC
Q 014368 10 LPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAV---P--AIVPRVSG--VHMLLDSFE--PIHGVLLCEGEDIDP 77 (426)
Q Consensus 10 ~P~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~---~--vivp~~~~--~~~l~~~le--~~DGVILsGG~didp 77 (426)
+++++|++-.+ ...+...+--+.....++.+.|+. + .++|-+.+ .+.+.+.++ .+|-||.+||.++.|
T Consensus 3 ~~~~aIItvSd~~~~G~i~D~ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g~ 80 (193)
T PRK09417 3 TLKIGLVSISDRASSGVYEDKGIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGPAR 80 (193)
T ss_pred CcEEEEEEEcCcCCCCceeechHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCCCC
Confidence 35677776433 233444444444455667788643 2 24442211 123444443 699999999976554
No 160
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=76.35 E-value=9 Score=34.39 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=37.7
Q ss_pred EEEEEccCc-CCcccccccchhHHHHHHHHCCCEEEEEcCCC-Chhhhhh----hcC--CCCEEEECCCCCCC
Q 014368 12 RVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLD----SFE--PIHGVLLCEGEDID 76 (426)
Q Consensus 12 ~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~----~le--~~DGVILsGG~did 76 (426)
+++|++-.+ ....+..+.-......++.+.|+.++...... +.+.+.+ .++ .+|-||.+||.+++
T Consensus 2 ~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g 74 (152)
T cd00886 2 RAAVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLA 74 (152)
T ss_pred EEEEEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCC
Confidence 355554322 33444444444445567889999877554332 3444433 344 69999999996544
No 161
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=74.81 E-value=8.4 Score=40.19 Aligned_cols=67 Identities=21% Similarity=0.200 Sum_probs=42.1
Q ss_pred CcEEEEEccCc-CC-------cccccccchhHHHHHHHHCCCEEEEEcCCC-Chh----hhhhhcCCCCEEEECCCCCCC
Q 014368 10 LPRVLIVSRRS-VR-------KNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVH----MLLDSFEPIHGVLLCEGEDID 76 (426)
Q Consensus 10 ~P~igI~~~~~-~~-------~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~----~l~~~le~~DGVILsGG~did 76 (426)
+|+|+|++..+ .. .++..+.-......++.+.|+.++.+.... +.+ .+.+.++.+|-||.+||.+..
T Consensus 168 ~~rv~ii~tGdEl~~~g~~~~~g~i~dsn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~s~g 247 (394)
T cd00887 168 RPRVAIISTGDELVEPGEPLAPGQIYDSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGVSVG 247 (394)
T ss_pred CCEEEEEeCCCcccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 69999997643 21 234444433344456888999988665443 333 334445569999999997544
No 162
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=74.45 E-value=10 Score=39.96 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=40.5
Q ss_pred CcEEEEEccCc-C-------CcccccccchhHHHHHHHHCCCEEEEEcCC-CChhhhh----hhcCCCCEEEECCCCCCC
Q 014368 10 LPRVLIVSRRS-V-------RKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLL----DSFEPIHGVLLCEGEDID 76 (426)
Q Consensus 10 ~P~igI~~~~~-~-------~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~----~~le~~DGVILsGG~did 76 (426)
+|+|+|++..+ . ..++..+.-......++.+.|+.++..... .+.+.+. +.++.+|-||.+||.+++
T Consensus 177 ~prV~iistGdEl~~~~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~S~G 256 (411)
T PRK10680 177 KVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVG 256 (411)
T ss_pred CCEEEEEccCCeEeCCCCCCCCCEEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCCCCC
Confidence 59999997543 1 122333322222344688899988755433 2344343 334579999999997654
Q ss_pred C
Q 014368 77 P 77 (426)
Q Consensus 77 p 77 (426)
+
T Consensus 257 ~ 257 (411)
T PRK10680 257 E 257 (411)
T ss_pred C
Confidence 3
No 163
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=74.04 E-value=16 Score=34.53 Aligned_cols=58 Identities=9% Similarity=0.026 Sum_probs=35.5
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhh----h-cCCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLD----S-FEPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~----~-le~~DGVILsGG 72 (426)
||++... ..+.|...+-....+.+...|..++++....+.+...+ . -..+||||+..+
T Consensus 2 Ig~i~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~ 64 (273)
T cd06305 2 IAVVRYG--GSGDFDQAYLAGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHG 64 (273)
T ss_pred eEEEeec--CCCcHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5555432 22445555556677889999999888765444332211 1 137999999765
No 164
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=73.64 E-value=15 Score=38.63 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=41.8
Q ss_pred CcEEEEEccCc-C-C------cccccccchhHHHHHHHHCCCEEEEEcCCCC-hh----hhhhhcCCCCEEEECCCCCC
Q 014368 10 LPRVLIVSRRS-V-R------KNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG-VH----MLLDSFEPIHGVLLCEGEDI 75 (426)
Q Consensus 10 ~P~igI~~~~~-~-~------~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~-~~----~l~~~le~~DGVILsGG~di 75 (426)
+|+|+|++..+ . . .++.++.-.......+++.|+.++......| .+ .+.+.++.+|-||.+||.++
T Consensus 176 kprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~Sv 254 (404)
T COG0303 176 KPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGGVSV 254 (404)
T ss_pred CCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCCccC
Confidence 49999998654 1 1 1233333222344568889999886665433 33 34455567999999999654
No 165
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=73.08 E-value=10 Score=41.50 Aligned_cols=66 Identities=9% Similarity=0.100 Sum_probs=40.7
Q ss_pred CcEEEEEccCc-C-------CcccccccchhHHHH-HHHHCCCEEEEEcCC-CChhhhh----hhcCCCCEEEECCCCCC
Q 014368 10 LPRVLIVSRRS-V-------RKNKFVDFVGEYHLD-LIVGYGAVPAIVPRV-SGVHMLL----DSFEPIHGVLLCEGEDI 75 (426)
Q Consensus 10 ~P~igI~~~~~-~-------~~~~~~~~v~~~yl~-~l~~~Ga~~vivp~~-~~~~~l~----~~le~~DGVILsGG~di 75 (426)
+|+|+|++..+ . ..++..+. +.+++. ++.+.|+.++.++.. .+.+.+. +.++.+|-||++||.+.
T Consensus 179 rprV~IisTGdELv~pg~~l~~G~I~ds-Ns~~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~~~DlVIttGGtS~ 257 (546)
T PRK14497 179 KPKIYLIATGDELVEPGNSLSPGKIYES-NLHYLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAISVADVLILTGGTSA 257 (546)
T ss_pred CCEEEEEEcCCcccCCCCCCCCCcEEEh-HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCccC
Confidence 68999997543 1 12333433 333454 488899988755433 2344443 34567999999999654
Q ss_pred C
Q 014368 76 D 76 (426)
Q Consensus 76 d 76 (426)
.
T Consensus 258 G 258 (546)
T PRK14497 258 G 258 (546)
T ss_pred C
Confidence 4
No 166
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=72.83 E-value=8.8 Score=35.67 Aligned_cols=66 Identities=24% Similarity=0.367 Sum_probs=39.6
Q ss_pred EEEEEccCcCC-cccccccchhHHHHHHHHCCCEE---EEEcCCCC--hhhhhhhcCC-CCEEEECCCCCCCC
Q 014368 12 RVLIVSRRSVR-KNKFVDFVGEYHLDLIVGYGAVP---AIVPRVSG--VHMLLDSFEP-IHGVLLCEGEDIDP 77 (426)
Q Consensus 12 ~igI~~~~~~~-~~~~~~~v~~~yl~~l~~~Ga~~---vivp~~~~--~~~l~~~le~-~DGVILsGG~didp 77 (426)
+++|++-.+.+ .....|--+....++|.++|..+ .+||-+.. ...+.+.... +|.||.+||.++.|
T Consensus 9 ~~~VvTVSd~r~~~~~~D~sG~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~t~ 81 (169)
T COG0521 9 RIAVVTVSDRRSTGEYEDKSGPLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGITP 81 (169)
T ss_pred eEEEEEEecccccCCccccchhHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccCCC
Confidence 36666533333 33333666777889999999776 46663221 1222333333 89999999987654
No 167
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=71.97 E-value=23 Score=33.58 Aligned_cols=61 Identities=15% Similarity=0.016 Sum_probs=37.8
Q ss_pred EEEEEccC-c----CCcccccccchhHHHHHHHHCCCEEEEEcCCCC-hhhhhhhc--CCCCEEEECCC
Q 014368 12 RVLIVSRR-S----VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG-VHMLLDSF--EPIHGVLLCEG 72 (426)
Q Consensus 12 ~igI~~~~-~----~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~-~~~l~~~l--e~~DGVILsGG 72 (426)
.|||+... + ...+.+...+-+...+.+.+.|..++++....+ ...+.+.+ ..+||||+.+.
T Consensus 5 ~i~vi~p~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~ 73 (275)
T cd06295 5 TIALVVPEPHERDQSFSDPFFLSLLGGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQ 73 (275)
T ss_pred EEEEEecCccccccccCCchHHHHHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCC
Confidence 56776532 1 123445555556667788889999888765433 33333333 47999999764
No 168
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=71.93 E-value=20 Score=33.93 Aligned_cols=58 Identities=12% Similarity=0.077 Sum_probs=36.9
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-e~~DGVILsGG 72 (426)
|||+... ..+.+..-+-....+.+.+.|..+++.....+.+. +.... ..+||||+.++
T Consensus 2 Igvv~~~--~~~~~~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (269)
T cd06281 2 IGCLVSD--ITNPLLAQLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPG 64 (269)
T ss_pred EEEEecC--CccccHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 6666532 23455566667778889999999887765444321 22222 37999999865
No 169
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.85 E-value=13 Score=37.51 Aligned_cols=84 Identities=20% Similarity=0.165 Sum_probs=49.4
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh------h--hhhhhcCCCCEEEECCCCCCCCCcccc
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV------H--MLLDSFEPIHGVLLCEGEDIDPSLYEA 82 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~------~--~l~~~le~~DGVILsGG~didp~~y~~ 82 (426)
.+|||+.++.... ..-+.+...+++.+.|..+.+.+..... . ...+..+.+|-||.-||-+
T Consensus 5 ~~v~iv~~~~k~~---a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG-------- 73 (295)
T PRK01231 5 RNIGLIGRLGSSS---VVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDG-------- 73 (295)
T ss_pred CEEEEEecCCCHH---HHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcH--------
Confidence 4789988764321 1223445677888999888876532110 0 0111223578788778821
Q ss_pred cCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHH
Q 014368 83 ETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (426)
Q Consensus 83 ~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~ 134 (426)
..+..++.+...++|||||=.|.
T Consensus 74 -----------------------------t~l~~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 74 -----------------------------SLLGAARALARHNVPVLGINRGR 96 (295)
T ss_pred -----------------------------HHHHHHHHhcCCCCCEEEEeCCc
Confidence 12344555555789999999875
No 170
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=71.33 E-value=11 Score=37.28 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=62.7
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEE-EE--cC--CCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPA-IV--PR--VSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSN 86 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~v-iv--p~--~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~ 86 (426)
.|.|+...+..+ -.+++.|++..+..|+.-| ++ .+ +.+.+.+...++.++||+|+|| |-..|-
T Consensus 54 ~i~I~paas~ep----~~iG~~y~rife~~gv~~v~ildir~R~~a~~s~~~~~v~~a~gIfftGG---DQ~ri~----- 121 (293)
T COG4242 54 YIVIIPAASREP----RAIGGNYIRIFEMMGVEEVQILDIRNREDASSSDIVAKVENATGIFFTGG---DQLRII----- 121 (293)
T ss_pred EEEEEecCccCh----hhhccchhhHHHHhccceeEEEeeecccccchHHHHHHHHhCceEEEecC---cceeee-----
Confidence 556655443211 4678889998888997655 32 22 2234556667789999999999 322221
Q ss_pred CChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHH
Q 014368 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNV 139 (426)
Q Consensus 87 ~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLav 139 (426)
...+|.-..+.++....+++-+-|+--|.-+|..
T Consensus 122 -------------------~~lkdTpl~~~ir~r~r~G~avgGTSAGAavM~~ 155 (293)
T COG4242 122 -------------------GSLKDTPLMAAIRQRVRRGIAVGGTSAGAAVMSD 155 (293)
T ss_pred -------------------eeccCCHHHHHHHHHHhcCceecccccchhhcCC
Confidence 1123333456666667788999999999988865
No 171
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=70.98 E-value=13 Score=39.26 Aligned_cols=71 Identities=21% Similarity=0.186 Sum_probs=41.9
Q ss_pred CCCC-CcEEEEEccCc-CC-------cccccccchhHHHHHHHHCCCEEEEEcCC-CChhhh----hhhcCCCCEEEECC
Q 014368 6 LSVI-LPRVLIVSRRS-VR-------KNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHML----LDSFEPIHGVLLCE 71 (426)
Q Consensus 6 ~~~~-~P~igI~~~~~-~~-------~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l----~~~le~~DGVILsG 71 (426)
+..+ +|+|+|++..+ .. .++..+.-.......+.+.|+.++..... .+.+.+ .+.++.+|-||++|
T Consensus 188 V~V~~~prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTG 267 (419)
T PRK14690 188 VSVRRPLRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSG 267 (419)
T ss_pred eEeecCCEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcC
Confidence 3344 68999997643 11 23334432223344688899988754433 233333 34456799999999
Q ss_pred CCCCC
Q 014368 72 GEDID 76 (426)
Q Consensus 72 G~did 76 (426)
|.+++
T Consensus 268 G~S~G 272 (419)
T PRK14690 268 GASAG 272 (419)
T ss_pred CccCC
Confidence 96544
No 172
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=70.91 E-value=9.8 Score=41.89 Aligned_cols=66 Identities=23% Similarity=0.178 Sum_probs=44.5
Q ss_pred CCcEEEEEccCc--CCcccccccchhHHHHHHHHCCCEEEEEcCCC------------Chhhhhhh------cCCCCEEE
Q 014368 9 ILPRVLIVSRRS--VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS------------GVHMLLDS------FEPIHGVL 68 (426)
Q Consensus 9 ~~P~igI~~~~~--~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~------------~~~~l~~~------le~~DGVI 68 (426)
.+|.|||++.++ ...|....-+.+..-+-+.++|+.|+.++... +.+-+.+. -..+||+|
T Consensus 46 ~KP~IgI~ns~se~~Pch~hl~~la~~vk~gI~~aGG~p~ef~ti~v~d~~~~~~~l~sRelIAd~iE~~~~a~~~Dg~V 125 (596)
T PRK13017 46 GKPIIGIAQTGSDLSPCNRHHLELAERVKEGIRDAGGIPMEFPVHPIQETGKRPTAALDRNLAYLGLVEILYGYPLDGVV 125 (596)
T ss_pred CCCEEEEEecccCCcCchhhHHHHHHHHHHHHHHcCCeeEecccccccccCCCcccccCHHHHHHHHHHHHhcCCcceEE
Confidence 699999999776 35555455556666677999999999877421 11112221 23689999
Q ss_pred ECCCCC
Q 014368 69 LCEGED 74 (426)
Q Consensus 69 LsGG~d 74 (426)
+.+|.|
T Consensus 126 ~i~gCD 131 (596)
T PRK13017 126 LTTGCD 131 (596)
T ss_pred EeccCC
Confidence 999964
No 173
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=70.33 E-value=13 Score=34.28 Aligned_cols=63 Identities=16% Similarity=0.080 Sum_probs=36.3
Q ss_pred EEEEccCc-CCcccccccchhHHHHHHHHCCCEEEEEcCC-CChh----hhhhhcCCCCEEEECCCCCC
Q 014368 13 VLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVH----MLLDSFEPIHGVLLCEGEDI 75 (426)
Q Consensus 13 igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~----~l~~~le~~DGVILsGG~di 75 (426)
++|++-.+ ...++..+.-.....+++.+.|..+..+... .+.+ .+.+.++.+|-||.+||-+.
T Consensus 2 v~Ii~~GdEl~~G~i~d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~ 70 (170)
T cd00885 2 AEIIAIGDELLSGQIVDTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGP 70 (170)
T ss_pred EEEEEECccccCCeEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 34444322 3344444544445566788999887643322 2233 34445567999999999653
No 174
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=69.58 E-value=12 Score=40.34 Aligned_cols=85 Identities=19% Similarity=0.170 Sum_probs=48.0
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHH-HCCCEEEEEcCCCCh-----------------hhhhhhcCCCCEEEECC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIV-GYGAVPAIVPRVSGV-----------------HMLLDSFEPIHGVLLCE 71 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~-~~Ga~~vivp~~~~~-----------------~~l~~~le~~DGVILsG 71 (426)
...|||+.++.... . .-+....++|+. ..|..+++-+..... ..+.+....+|-||.-|
T Consensus 194 p~~VgIV~n~~k~~--a-~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiG 270 (508)
T PLN02935 194 PQTVLIITKPNSTS--V-RVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLG 270 (508)
T ss_pred CCEEEEEecCCCHH--H-HHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEEC
Confidence 35789988764321 1 122344567787 477777664421110 11111223588888888
Q ss_pred CCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHH
Q 014368 72 GEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (426)
Q Consensus 72 G~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~ 134 (426)
| | ...+..++.+...++|||||=.|.
T Consensus 271 G---D----------------------------------GTlL~Aar~~~~~~iPILGIN~G~ 296 (508)
T PLN02935 271 G---D----------------------------------GTVLWAASMFKGPVPPVVPFSMGS 296 (508)
T ss_pred C---c----------------------------------HHHHHHHHHhccCCCcEEEEeCCC
Confidence 8 2 112455565556689999998664
No 175
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.51 E-value=14 Score=36.87 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=39.6
Q ss_pred HHHHHHHHCCCEEEEEcCCCCh----h----hhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCcc
Q 014368 33 YHLDLIVGYGAVPAIVPRVSGV----H----MLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTA 104 (426)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~----~----~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~ 104 (426)
..++|+.+.|..+.+-+..... . ...+..+.+|-+|.-|| |
T Consensus 4 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGG---D---------------------------- 52 (272)
T PRK02231 4 NLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIGQRAQLAIVIGG---D---------------------------- 52 (272)
T ss_pred HHHHHHHHCCCEEEEecchhhhcCccccccCChHHhCcCCCEEEEECC---c----------------------------
Confidence 3467788899888775432110 0 11222235898888898 2
Q ss_pred ccchhhHHHHHHHHHHHHcCCCEEEEehHH
Q 014368 105 IDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (426)
Q Consensus 105 ~d~~rd~~e~~lir~ale~~iPILGIClG~ 134 (426)
...+..++.+...++|||||=.|.
T Consensus 53 ------GT~L~aa~~~~~~~~PilgIn~G~ 76 (272)
T PRK02231 53 ------GNMLGRARVLAKYDIPLIGINRGN 76 (272)
T ss_pred ------HHHHHHHHHhccCCCcEEEEeCCC
Confidence 112445555556789999998774
No 176
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=68.94 E-value=21 Score=33.92 Aligned_cols=58 Identities=5% Similarity=-0.033 Sum_probs=37.2
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----e~~DGVILsGG 72 (426)
|||+... ..+.|+..+-....+++.+.|..+++.....+.+...+.+ ..+||||+++.
T Consensus 2 igv~~~~--~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~ 64 (282)
T cd06318 2 IGFSQYT--LNSPFFAALTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPV 64 (282)
T ss_pred eeEEecc--ccCHHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5665432 2356666677777888999999988876544433221111 26999999754
No 177
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.80 E-value=14 Score=36.89 Aligned_cols=82 Identities=21% Similarity=0.220 Sum_probs=48.8
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCC----hh--hhhhhc-CCCCEEEECCCCCCCCCcccccC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG----VH--MLLDSF-EPIHGVLLCEGEDIDPSLYEAET 84 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~----~~--~l~~~l-e~~DGVILsGG~didp~~y~~~~ 84 (426)
+|+|+.+..... ..-+.....+++.+.|..+.+.+.... .. ...... ..+|.||..||-+
T Consensus 2 ~v~iv~~~~k~~---~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG---------- 68 (277)
T PRK03708 2 RFGIVARRDKEE---ALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDG---------- 68 (277)
T ss_pred EEEEEecCCCHH---HHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcH----------
Confidence 578887764311 122344567789999998887643111 00 000111 2589999999921
Q ss_pred CCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHH
Q 014368 85 SNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (426)
Q Consensus 85 ~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~ 134 (426)
..+..++ ....++||+||=.|.
T Consensus 69 ---------------------------TlL~a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 69 ---------------------------TILRIEH-KTKKDIPILGINMGT 90 (277)
T ss_pred ---------------------------HHHHHHH-hcCCCCeEEEEeCCC
Confidence 1234555 556689999998876
No 178
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.01 E-value=19 Score=36.35 Aligned_cols=59 Identities=14% Similarity=0.104 Sum_probs=33.2
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh---h-hhhcCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM---L-LDSFEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~---l-~~~le~~DGVILsGG 72 (426)
.+|+|+.++.... ..-.....++++.+.|..+.+.+....... . ....+.+|-||..||
T Consensus 4 kkv~lI~n~~~~~---~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GG 66 (305)
T PRK02645 4 KQVIIAYKAGSSQ---AKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGG 66 (305)
T ss_pred CEEEEEEeCCCHH---HHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECC
Confidence 4678887763211 112234457788899999887653221111 0 111235788888888
No 179
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=67.77 E-value=14 Score=40.32 Aligned_cols=49 Identities=14% Similarity=0.053 Sum_probs=34.9
Q ss_pred CCCCCCCCCcEEEEEccCcC--CcccccccchhHHHHHHHHCCCEEEEEcC
Q 014368 2 AAHDLSVILPRVLIVSRRSV--RKNKFVDFVGEYHLDLIVGYGAVPAIVPR 50 (426)
Q Consensus 2 ~~~~~~~~~P~igI~~~~~~--~~~~~~~~v~~~yl~~l~~~Ga~~vivp~ 50 (426)
|.+|-.-.+|.|||+..++. ..|....-+.+..-+-+.++|+.|+.++.
T Consensus 23 G~~~edl~kP~IgI~ns~se~~Pch~hl~~la~~Vk~gi~~aGg~p~ef~t 73 (552)
T PRK00911 23 GLTDEDFDKPFIGIANSWNEITPCNIHLNELADAVKEGVRAAGGVPFEFNT 73 (552)
T ss_pred CCChHHhcCCEEEEeccccccccchhhHHHHHHHHHHHHHHcCCEeEEeCC
Confidence 44443446999999998763 55555555566666678999999998864
No 180
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=66.87 E-value=15 Score=40.54 Aligned_cols=68 Identities=22% Similarity=0.205 Sum_probs=42.2
Q ss_pred CcEEEEEccCc-C-------CcccccccchhHHHHHHHHCCCEEEEEcCC-CChhhh----hhhcCCCCEEEECCCCCCC
Q 014368 10 LPRVLIVSRRS-V-------RKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHML----LDSFEPIHGVLLCEGEDID 76 (426)
Q Consensus 10 ~P~igI~~~~~-~-------~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l----~~~le~~DGVILsGG~did 76 (426)
+|+|+|++..+ . ..++..+.-+.....++...|+.++..... .+.+.| .+.++.+|-||.+||.+++
T Consensus 186 ~prv~vi~tG~El~~~~~~~~~g~i~dsn~~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIttGG~s~g 265 (633)
T PRK14498 186 KPRVGIISTGDELVEPGEPLKPGKIYDVNSYTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLLSGGTSAG 265 (633)
T ss_pred CcEEEEEecCccccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEECCCCcCC
Confidence 58999997543 1 123444443444555688999988754432 233333 3444579999999997654
Q ss_pred C
Q 014368 77 P 77 (426)
Q Consensus 77 p 77 (426)
+
T Consensus 266 ~ 266 (633)
T PRK14498 266 A 266 (633)
T ss_pred C
Confidence 4
No 181
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=66.56 E-value=5.7 Score=39.45 Aligned_cols=21 Identities=48% Similarity=0.732 Sum_probs=14.1
Q ss_pred HHHHHHHHHcCCCEEEEehHH
Q 014368 114 LRLAKLCLERNIPYLGICRGS 134 (426)
Q Consensus 114 ~~lir~ale~~iPILGIClG~ 134 (426)
+..++.+...++|||||=.|.
T Consensus 90 L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 90 LRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp HHHHHHCTTST-EEEEEESSS
T ss_pred HHHHHHhccCCCcEEeecCCC
Confidence 455555555689999998764
No 182
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=66.48 E-value=27 Score=33.50 Aligned_cols=60 Identities=12% Similarity=-0.016 Sum_probs=36.9
Q ss_pred EEEEccCc---CCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhh-cCCCCEEEECCC
Q 014368 13 VLIVSRRS---VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDS-FEPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~---~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~-le~~DGVILsGG 72 (426)
|||+.... ...+.+...+-....+.+.+.|..+++++.....+.+... -..+||+|+.+.
T Consensus 2 igvi~p~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 65 (283)
T cd06279 2 VGVVLTDSLSYAFSDPVASQFLAGVAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGV 65 (283)
T ss_pred EEEEeCCcccccccCccHHHHHHHHHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCC
Confidence 56664321 1346666666666778889999999888754322222211 247999999865
No 183
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=66.47 E-value=35 Score=32.17 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=36.3
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhh----hhhc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHML----LDSF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l----~~~l-e~~DGVILsGG 72 (426)
|||+... ..+.+...+-....+++.+.|..+++.+...+.+.. .... ..+||||+.+.
T Consensus 2 Igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06292 2 VGLLVPE--LSNPIFPAFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISS 64 (273)
T ss_pred EEEEeCC--CcCchHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5666532 234555666677788899999999887654332211 1111 36999999764
No 184
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=66.28 E-value=19 Score=39.24 Aligned_cols=50 Identities=10% Similarity=-0.025 Sum_probs=35.4
Q ss_pred CCCCCCCCCCcEEEEEccCcC--CcccccccchhHHHHHHHHCCCEEEEEcC
Q 014368 1 MAAHDLSVILPRVLIVSRRSV--RKNKFVDFVGEYHLDLIVGYGAVPAIVPR 50 (426)
Q Consensus 1 ~~~~~~~~~~P~igI~~~~~~--~~~~~~~~v~~~yl~~l~~~Ga~~vivp~ 50 (426)
||.+|-...+|.|||++.++. ..|....-+.+..-+.+..+|+.|+.++.
T Consensus 2 ~G~~~ed~~kP~IgI~ns~~e~~pch~hl~~l~~~vk~gv~~aGg~p~ef~t 53 (535)
T TIGR00110 2 TGFTDEDFGKPFIGVANSYTTIVPGHMHLRDLAQAVKEGIEAAGGVAFEFNT 53 (535)
T ss_pred CCCChHHhCCCEEEEEeccccCcCchhhHHHHHHHHHHHHHHcCCeeEEecC
Confidence 345554456999999998763 55554455556556678899999998864
No 185
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=65.55 E-value=1.2e+02 Score=28.43 Aligned_cols=87 Identities=15% Similarity=0.125 Sum_probs=43.4
Q ss_pred EEEEEccCc-CCcccccccchhHHHHHHH-HCCCEEEEEcCCCChhhh-hhhcCCCCEEEECCCCCCCCCcccccCCCCC
Q 014368 12 RVLIVSRRS-VRKNKFVDFVGEYHLDLIV-GYGAVPAIVPRVSGVHML-LDSFEPIHGVLLCEGEDIDPSLYEAETSNLS 88 (426)
Q Consensus 12 ~igI~~~~~-~~~~~~~~~v~~~yl~~l~-~~Ga~~vivp~~~~~~~l-~~~le~~DGVILsGG~didp~~y~~~~~~~~ 88 (426)
+|+|++... -.....+........+.+. ..|..+.+.. +.+.+ .+.|+.+|.||+..... + . ++
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~---~~~~~~~~~L~~~Dvvv~~~~~~-~-~--------l~ 67 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTE---DPDDLTPENLKGYDVVVFYNTGG-D-E--------LT 67 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECC---SGGCTSHHCHCT-SEEEEE-SSC-C-G--------S-
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEe---CcccCChhHhcCCCEEEEECCCC-C-c--------CC
Confidence 577777652 2222222233333445555 3555555443 22222 23478899999976531 0 0 11
Q ss_pred hhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehH
Q 014368 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRG 133 (426)
Q Consensus 89 ~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG 133 (426)
++ ..+.++..+++|.+++||..+
T Consensus 68 ~~----------------------~~~al~~~v~~Ggglv~lH~~ 90 (217)
T PF06283_consen 68 DE----------------------QRAALRDYVENGGGLVGLHGA 90 (217)
T ss_dssp HH----------------------HHHHHHHHHHTT-EEEEEGGG
T ss_pred HH----------------------HHHHHHHHHHcCCCEEEEccc
Confidence 12 234566677899999999844
No 186
>PLN02727 NAD kinase
Probab=65.46 E-value=17 Score=42.00 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=48.4
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHC-CCEEEEEcCCCChh---------------hhhhhcCCCCEEEECCCCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY-GAVPAIVPRVSGVH---------------MLLDSFEPIHGVLLCEGED 74 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~-Ga~~vivp~~~~~~---------------~l~~~le~~DGVILsGG~d 74 (426)
.+|||+..... ... ......++||... |..+++=+...+.. ...+..+.+|-||.-||
T Consensus 679 rtVgIV~K~~~---ea~-~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLGG-- 752 (986)
T PLN02727 679 KTVLLLKKLGQ---ELM-EEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGG-- 752 (986)
T ss_pred CEEEEEcCCcH---HHH-HHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEEECC--
Confidence 57888887643 222 2233457788887 77766543221100 11122235788888888
Q ss_pred CCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHH
Q 014368 75 IDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (426)
Q Consensus 75 idp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~ 134 (426)
| ...+..++.+...++|||||=+|.
T Consensus 753 -D----------------------------------GTlLrAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 753 -D----------------------------------GVILHASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred -c----------------------------------HHHHHHHHHhcCCCCCEEEEeCCC
Confidence 2 223455666666789999999885
No 187
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=64.86 E-value=34 Score=31.49 Aligned_cols=58 Identities=9% Similarity=-0.006 Sum_probs=35.5
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhh----hhhc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHML----LDSF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l----~~~l-e~~DGVILsGG 72 (426)
|+++.... .+.+...+.....+++...|..+++.....+.+.. .... ..+||||+.+.
T Consensus 2 i~~v~~~~--~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~ 64 (264)
T cd06267 2 IGVIVPDI--SNPFFAELLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPS 64 (264)
T ss_pred EEEEECCC--CCHHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecC
Confidence 45554332 23445555566677788889888888766543222 1111 37999999876
No 188
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=64.76 E-value=7.8 Score=32.36 Aligned_cols=32 Identities=19% Similarity=0.080 Sum_probs=18.7
Q ss_pred CEEEEEcCCCChhhhhhhcCCCCEEEECCCCC
Q 014368 43 AVPAIVPRVSGVHMLLDSFEPIHGVLLCEGED 74 (426)
Q Consensus 43 a~~vivp~~~~~~~l~~~le~~DGVILsGG~d 74 (426)
...+|++-+...-.+......+.||||+||..
T Consensus 41 ~~lvIt~gdR~di~~~a~~~~i~~iIltg~~~ 72 (105)
T PF07085_consen 41 GDLVITPGDREDIQLAAIEAGIACIILTGGLE 72 (105)
T ss_dssp TEEEEEETT-HHHHHHHCCTTECEEEEETT--
T ss_pred CeEEEEeCCcHHHHHHHHHhCCCEEEEeCCCC
Confidence 45666766553333333445689999999954
No 189
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=64.66 E-value=29 Score=32.72 Aligned_cols=58 Identities=7% Similarity=0.038 Sum_probs=36.1
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHH-CCCEEEEEcCCCChhhhh----hh-cCCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVG-YGAVPAIVPRVSGVHMLL----DS-FEPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~-~Ga~~vivp~~~~~~~l~----~~-le~~DGVILsGG 72 (426)
|||+... ..+.|+..+-....+++.. .|..+++.....+.+... .. -..+||+|+.+.
T Consensus 2 igvi~~~--~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 65 (272)
T cd06301 2 IGVSMAN--FDDNFLTLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPV 65 (272)
T ss_pred eeEeecc--cCCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5565432 2355666677777888888 898888775443332221 11 127999999764
No 190
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=64.65 E-value=29 Score=32.79 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=36.9
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCC--CChhhhhhh-----cCCCCEEEECCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV--SGVHMLLDS-----FEPIHGVLLCEG 72 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~--~~~~~l~~~-----le~~DGVILsGG 72 (426)
+|||+... ..+.|+..+-....+++.+.|..+.++... .+.+...+. -..+||||+.+.
T Consensus 1 ~Igvi~~~--~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~ 66 (273)
T cd06310 1 KIALVPKG--TTSDFWQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPT 66 (273)
T ss_pred CeEEEecC--CCcHHHHHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 46776532 235566666677778899999999887532 233221111 136999999865
No 191
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=64.60 E-value=29 Score=32.37 Aligned_cols=58 Identities=10% Similarity=-0.055 Sum_probs=34.6
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhh----hh-cCCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLL----DS-FEPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~----~~-le~~DGVILsGG 72 (426)
|||+... ..+.++.-+-....+.+...|..+++.....+.+... .. -..+||||+..+
T Consensus 2 igvv~~~--~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (266)
T cd06282 2 VGVVLPS--LANPVFAECVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVA 64 (266)
T ss_pred eEEEeCC--CCcchHHHHHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 5665532 1234444455566778889999999876544332211 11 136999999765
No 192
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=64.60 E-value=36 Score=31.94 Aligned_cols=58 Identities=19% Similarity=0.159 Sum_probs=36.3
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChh----hhhhhc--CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVH----MLLDSF--EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~----~l~~~l--e~~DGVILsGG 72 (426)
|||+... ..+.|...+-....+++.+.|..+++...+.+.+ .+.+.+ ..+||||+.++
T Consensus 2 I~vi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (270)
T cd01545 2 IGLLYDN--PSPGYVSEIQLGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPP 65 (270)
T ss_pred EEEEEcC--CCcccHHHHHHHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCC
Confidence 5565532 2345555566667778889999998886653322 222222 36999999866
No 193
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=63.35 E-value=23 Score=39.25 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=42.2
Q ss_pred CCCC-CcEEEEEccCc-CC-------cccccccchhHHHHHHHHCCCEEEEEcCC-CChhh----hhhhcCCCCEEEECC
Q 014368 6 LSVI-LPRVLIVSRRS-VR-------KNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHM----LLDSFEPIHGVLLCE 71 (426)
Q Consensus 6 ~~~~-~P~igI~~~~~-~~-------~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~----l~~~le~~DGVILsG 71 (426)
++.+ +|+|+|++..+ .. .++..+.-......++.+.|+.++.+... .+.+. +.+.++.+|-||.+|
T Consensus 362 V~V~~~prV~IistGdEl~~~g~~~~~g~i~dsn~~~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIIttG 441 (597)
T PRK14491 362 VPVFRRPKVAVFSTGDEVQAPGETLKPNCIYDSNRFTIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAAQADVVISSG 441 (597)
T ss_pred EEeccCCEEEEEecCCeeccCCCcCCCCcEEeCCHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcC
Confidence 3344 59999997543 11 23333433333445688899988644432 23333 334456799999999
Q ss_pred CCCCC
Q 014368 72 GEDID 76 (426)
Q Consensus 72 G~did 76 (426)
|.++.
T Consensus 442 G~s~G 446 (597)
T PRK14491 442 GVSVG 446 (597)
T ss_pred CccCC
Confidence 97654
No 194
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=63.08 E-value=36 Score=32.03 Aligned_cols=58 Identities=7% Similarity=0.022 Sum_probs=36.7
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----e~~DGVILsGG 72 (426)
|||+... ..+.++..+-....+++...|..+.+.....+.+...+.+ ..+||||+.+.
T Consensus 2 igvi~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (264)
T cd06274 2 IGLIIPD--LENRSFARIAKRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGS 64 (264)
T ss_pred EEEEecc--ccCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4555432 2345555566667778889999988877654443222211 37999999876
No 195
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=62.74 E-value=39 Score=31.83 Aligned_cols=50 Identities=14% Similarity=0.030 Sum_probs=31.9
Q ss_pred cccccccchhHHHHHHHHCCCEEEEEcCCCChh---hhhhh--cCCCCEEEECCC
Q 014368 23 KNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVH---MLLDS--FEPIHGVLLCEG 72 (426)
Q Consensus 23 ~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~---~l~~~--le~~DGVILsGG 72 (426)
.+.|...+-...-+.+...|..+++...+.+.+ .+.+. -..+||||+.+.
T Consensus 13 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 67 (268)
T cd06277 13 SPAFYSEIYRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGG 67 (268)
T ss_pred cCCcHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCC
Confidence 355555556666777888999998877554332 11121 136999999764
No 196
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=62.73 E-value=38 Score=31.39 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=36.1
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-e~~DGVILsGG 72 (426)
||++.... .+.+...+....-+++...|..++++....+.+. +.... .++||||+.+.
T Consensus 2 ig~i~p~~--~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (267)
T cd01536 2 IGLVVPSL--NNPFWQAMNKGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPV 64 (267)
T ss_pred EEEEeccc--cCHHHHHHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 56655321 2445555666667778889999998876544322 11111 27999999865
No 197
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=62.70 E-value=19 Score=39.53 Aligned_cols=73 Identities=19% Similarity=0.136 Sum_probs=46.6
Q ss_pred CCCCCCC-CCcEEEEEccCcC--CcccccccchhHHHHHHHHCCCEEEEEcCCCC------------hhhhhhh------
Q 014368 2 AAHDLSV-ILPRVLIVSRRSV--RKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG------------VHMLLDS------ 60 (426)
Q Consensus 2 ~~~~~~~-~~P~igI~~~~~~--~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~------------~~~l~~~------ 60 (426)
|.+|-.- .+|.|||++.++. ..|....-+.+..-+.+..+|+.|+.++.... .+-|.++
T Consensus 33 G~~~~d~~~KP~IgI~ns~se~~Pch~hL~~la~~Vk~gv~~aGG~P~ef~ti~v~Dgi~~g~sl~~RelIAdsiE~~~~ 112 (577)
T PRK13016 33 GYAPEDFDGKPVIAILNTWSDANPCHGHFRERVEDVKRGVLQAGGFPLELPALSLSENFVKPTTMLYRNLLAMETEELIR 112 (577)
T ss_pred CCCHHHHhcCCEEEEEecccCCcCchhhHHHHHHHHHHHHHHcCCeeEecccccCcccccCCcccccHHHHHHHHHHHHh
Confidence 4444333 5899999998763 45554555566666678899999987764211 1112221
Q ss_pred cCCCCEEEECCCCC
Q 014368 61 FEPIHGVLLCEGED 74 (426)
Q Consensus 61 le~~DGVILsGG~d 74 (426)
...+||+|+-+|.|
T Consensus 113 a~~~Dg~V~l~~CD 126 (577)
T PRK13016 113 SHPVDGAVLMGGCD 126 (577)
T ss_pred cCCccceEEeccCC
Confidence 23689999999864
No 198
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=62.58 E-value=37 Score=31.17 Aligned_cols=58 Identities=10% Similarity=0.093 Sum_probs=35.9
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhh----hc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLD----SF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~----~l-e~~DGVILsGG 72 (426)
||++...+ ...+...+.....+++...|...++++...+.+...+ .. ..+||||+.+.
T Consensus 2 ig~v~~~~--~~~~~~~~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~ 64 (264)
T cd01537 2 IGVLVPDL--DNPFFAQVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPS 64 (264)
T ss_pred eEEEEcCC--CChHHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 56666432 2334445556667778889998888876544322211 12 37999999765
No 199
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=62.48 E-value=37 Score=31.83 Aligned_cols=58 Identities=10% Similarity=0.052 Sum_probs=34.2
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhcC-CCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSFE-PIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~le-~~DGVILsGG 72 (426)
|||+... . .+.++.-+-....+.+.+.|..+++.....+.+. +....+ .+||||+.+.
T Consensus 2 i~vv~p~-~-~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd06273 2 IGAIVPT-L-DNAIFARVIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGL 64 (268)
T ss_pred eEEEeCC-C-CCchHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5666532 1 2344444455567788899999888654433331 112222 5999999754
No 200
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=62.18 E-value=40 Score=31.51 Aligned_cols=48 Identities=10% Similarity=-0.108 Sum_probs=30.6
Q ss_pred cccccchhHHHHHHHHCCCEEEEEcCCCChhhh----hhhc-CCCCEEEECCC
Q 014368 25 KFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHML----LDSF-EPIHGVLLCEG 72 (426)
Q Consensus 25 ~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l----~~~l-e~~DGVILsGG 72 (426)
.+..-+-....+++...|..+++.+...+.+.. .... ..+||||+.+.
T Consensus 12 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd01575 12 SVFADVLQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGL 64 (268)
T ss_pred hhHHHHHHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCC
Confidence 344444456677888999998887765443221 1111 36999999865
No 201
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=62.07 E-value=18 Score=39.66 Aligned_cols=73 Identities=23% Similarity=0.154 Sum_probs=47.7
Q ss_pred CCCCCCCC-CcEEEEEccCcC--CcccccccchhHHHHHHHHCCCEEEEEcCCCC------------hhhhhhh------
Q 014368 2 AAHDLSVI-LPRVLIVSRRSV--RKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG------------VHMLLDS------ 60 (426)
Q Consensus 2 ~~~~~~~~-~P~igI~~~~~~--~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~------------~~~l~~~------ 60 (426)
|.+|-.-. +|.|||++.++. ..|....-+.+..-+.+..+|+.|+.+|.... .+-|.++
T Consensus 29 G~~~ed~~~kP~IgI~ns~se~~Pch~hl~~l~~~vk~gi~~aGg~p~ef~ti~v~Dgi~~g~sL~sRelIAdsiE~~~~ 108 (571)
T PRK06131 29 GYPDELFDGRPIIGICNTWSDLNPCNAHFRQLAERVKRGVLEAGGFPVEFPVISLGESFLRPTAMLYRNLAAMDVEEMIR 108 (571)
T ss_pred CCChHHhccCCEEEEecccccCcCchhhHHHHHHHHHHHHHHcCCEEEecCccCccccccCccccccHHHHHHHHHHHHh
Confidence 44443345 899999998763 55555555566666779999999998875321 1122221
Q ss_pred cCCCCEEEECCCCC
Q 014368 61 FEPIHGVLLCEGED 74 (426)
Q Consensus 61 le~~DGVILsGG~d 74 (426)
...+||+|+-||.|
T Consensus 109 a~~~Dg~v~i~~CD 122 (571)
T PRK06131 109 GYPIDGVVLLGGCD 122 (571)
T ss_pred cCCcceEEEEeeCC
Confidence 23689999999964
No 202
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=62.04 E-value=37 Score=32.76 Aligned_cols=58 Identities=3% Similarity=-0.107 Sum_probs=37.7
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhh-----cCCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDS-----FEPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~-----le~~DGVILsGG 72 (426)
|+|+... ..+.++..+-....+.+...|..+.++....+.+...+. -..+||||+.+.
T Consensus 2 I~vi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (288)
T cd01538 2 IGLSLPT--KTEERWIRDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPV 64 (288)
T ss_pred eEEEEeC--CCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5555532 235566666677788899999999988765443322111 137999999864
No 203
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=61.95 E-value=29 Score=30.15 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=29.7
Q ss_pred ccchhHHHHHHHHCCCEEEEEcCC-CChhhhh----hhcCCCCEEEECCCCCCC
Q 014368 28 DFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLL----DSFEPIHGVLLCEGEDID 76 (426)
Q Consensus 28 ~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~----~~le~~DGVILsGG~did 76 (426)
+.-+.....++++.|+.++..... .+.+.|. +.++.+|-||.+||.++.
T Consensus 17 d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g~g 70 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTGPG 70 (135)
T ss_pred cCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCCCC
Confidence 444444566789999876533221 2434333 334569999999996544
No 204
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=61.70 E-value=38 Score=31.73 Aligned_cols=58 Identities=10% Similarity=0.128 Sum_probs=35.3
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-e~~DGVILsGG 72 (426)
|||+.... .+.+...+-....+++.+.|..+++++...+.+. +.... ..+||||+.+.
T Consensus 2 igvv~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 64 (265)
T cd06299 2 IGVIVPDI--RNPYFASLATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPH 64 (265)
T ss_pred EEEEecCC--CCccHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 56665321 2344455556667788899999988865444321 11112 36999999875
No 205
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=61.60 E-value=45 Score=31.07 Aligned_cols=58 Identities=9% Similarity=-0.023 Sum_probs=34.9
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhh----hhh-cCCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHML----LDS-FEPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l----~~~-le~~DGVILsGG 72 (426)
|||+... ..+.+...+-...-+++..+|..++++....+.+.. ... -..+||||+++.
T Consensus 2 igvv~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~ 64 (259)
T cd01542 2 IGVIVPR--LDSFSTSRTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLAT 64 (259)
T ss_pred eEEEecC--CccchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5666432 123444445555667788899999887654433321 111 147999999865
No 206
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.59 E-value=21 Score=39.25 Aligned_cols=83 Identities=23% Similarity=0.241 Sum_probs=47.7
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh-h----h---hhhhcCCCCEEEECCCCCCCCCccccc
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-H----M---LLDSFEPIHGVLLCEGEDIDPSLYEAE 83 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-~----~---l~~~le~~DGVILsGG~didp~~y~~~ 83 (426)
+|+|+.++.... ..-+....++++.+.|..+.+-+..... . . .....+.+|-||.-|| |
T Consensus 292 ~i~iv~~~~~~~---~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGG---D------- 358 (569)
T PRK14076 292 KFGIVSRIDNEE---AINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGG---D------- 358 (569)
T ss_pred EEEEEcCCCCHH---HHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECC---c-------
Confidence 488877654311 1122344577888899887765421100 0 0 0011235798888899 2
Q ss_pred CCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHH
Q 014368 84 TSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (426)
Q Consensus 84 ~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~ 134 (426)
...+..++.+...++|||||=.|.
T Consensus 359 ---------------------------GT~L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 359 ---------------------------GTVLRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred ---------------------------HHHHHHHHHhcCCCCCEEEEcCCC
Confidence 112445555555789999998875
No 207
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=61.34 E-value=43 Score=31.23 Aligned_cols=60 Identities=10% Similarity=0.066 Sum_probs=35.9
Q ss_pred EEEEccCcC--CcccccccchhHHHHHHHHCCCEEEEEcCCCCh---hhhhhhc--CCCCEEEECCC
Q 014368 13 VLIVSRRSV--RKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV---HMLLDSF--EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~--~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~---~~l~~~l--e~~DGVILsGG 72 (426)
|||+..... ..+.+..-+-....+.+.+.|..+.+.....+. +.+.+.+ ..+||+|+.+.
T Consensus 2 igvi~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 68 (268)
T cd06271 2 IGLVLPTGEREEGDPFFAEFLSGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRT 68 (268)
T ss_pred eEEEeCCcccccCCccHHHHHHHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecC
Confidence 566653211 234555555566677788899998887654332 2223332 35999999765
No 208
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=61.34 E-value=46 Score=32.72 Aligned_cols=61 Identities=10% Similarity=0.036 Sum_probs=39.3
Q ss_pred CCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEEC
Q 014368 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLC 70 (426)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILs 70 (426)
++-+|+|++...+......-.-+...+++|.+.|..++++.++...-.+... ..+|.||..
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~-~~~D~v~~~ 63 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKE-LGFDRVFNA 63 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhcc-CCCCEEEEe
Confidence 3447888886554443332234466889999999999999776443332222 368988875
No 209
>PLN02929 NADH kinase
Probab=61.15 E-value=24 Score=35.80 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=40.2
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHH
Q 014368 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (426)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~ 112 (426)
...++|.++|..+..+-.. ++...+..+|-||.-||-+ .
T Consensus 38 ~~~~~L~~~gi~~~~v~r~----~~~~~~~~~Dlvi~lGGDG-------------------------------------T 76 (301)
T PLN02929 38 FCKDILQQKSVDWECVLRN----ELSQPIRDVDLVVAVGGDG-------------------------------------T 76 (301)
T ss_pred HHHHHHHHcCCEEEEeecc----ccccccCCCCEEEEECCcH-------------------------------------H
Confidence 3456888999888655432 1133456789999999921 1
Q ss_pred HHHHHHHHHHcCCCEEEEehHH
Q 014368 113 ELRLAKLCLERNIPYLGICRGS 134 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~ 134 (426)
.+..++.+ ..++|||||=.|.
T Consensus 77 ~L~aa~~~-~~~iPvlGIN~Gp 97 (301)
T PLN02929 77 LLQASHFL-DDSIPVLGVNSDP 97 (301)
T ss_pred HHHHHHHc-CCCCcEEEEECCC
Confidence 24455655 6789999999883
No 210
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=60.94 E-value=30 Score=38.37 Aligned_cols=49 Identities=14% Similarity=0.094 Sum_probs=33.4
Q ss_pred CCCCCCCCCcEEEEEccCcC--CcccccccchhHHHHHHHHCCCEEEEEcC
Q 014368 2 AAHDLSVILPRVLIVSRRSV--RKNKFVDFVGEYHLDLIVGYGAVPAIVPR 50 (426)
Q Consensus 2 ~~~~~~~~~P~igI~~~~~~--~~~~~~~~v~~~yl~~l~~~Ga~~vivp~ 50 (426)
|.+|=.-.+|.|||+..++. ..|....-+.+..-+.+..+|+.|+.++.
T Consensus 25 G~~ded~~kP~IgI~ns~~e~~pch~hl~~la~~vk~gi~~aGG~p~ef~t 75 (615)
T PRK12448 25 GMKDEDFGKPIIAVVNSFTQFVPGHVHLKDLGQLVAREIEAAGGVAKEFNT 75 (615)
T ss_pred CCChHHhCCCEEEEEeccccCcCchhhHHHHHHHHHHHHHHcCCeeeEecc
Confidence 33333345999999998763 45544444555556678899999998764
No 211
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=60.91 E-value=46 Score=33.38 Aligned_cols=61 Identities=3% Similarity=-0.067 Sum_probs=41.4
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhh----hhc-CCCCEEEECCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLL----DSF-EPIHGVLLCEG 72 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~----~~l-e~~DGVILsGG 72 (426)
.+.||++... ..+.|++-+-..+.+++...|..+++.....+.+... ... ..+||||+.+.
T Consensus 25 ~~~Ig~i~~~--~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~ 90 (330)
T PRK10355 25 EVKIGMAIDD--LRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY 90 (330)
T ss_pred CceEEEEecC--CCchHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5678887732 3455667677788889999999999887654433221 222 27999999864
No 212
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=60.48 E-value=43 Score=31.21 Aligned_cols=58 Identities=10% Similarity=0.045 Sum_probs=34.7
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhh----hhhc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHML----LDSF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l----~~~l-e~~DGVILsGG 72 (426)
||++... ..+.+...+-....+++.+.|..+++.....+.+.. .... ..+||||+.+.
T Consensus 2 igvi~~~--~~~~~~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 64 (267)
T cd06283 2 IGVIVAD--ITNPFSSLVLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPT 64 (267)
T ss_pred EEEEecC--CccccHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCC
Confidence 4555422 234445555566777888999888877654433321 1112 36999999865
No 213
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=59.69 E-value=33 Score=32.14 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=35.4
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-e~~DGVILsGG 72 (426)
|||+... ..+.+...+.....+++.+.|..++++....+.+. +...+ ..+||||+.+.
T Consensus 2 i~vi~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (268)
T cd06298 2 VGVIIPD--ITNSYFAELARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGG 64 (268)
T ss_pred EEEEECC--CcchHHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 4555432 23455555666667788899999888765443322 11111 37999999864
No 214
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=59.58 E-value=42 Score=31.67 Aligned_cols=59 Identities=5% Similarity=-0.004 Sum_probs=34.1
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHC---CC--EEEEEcCCCChhhh----hhh-cCCCCEEEECCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGY---GA--VPAIVPRVSGVHML----LDS-FEPIHGVLLCEG 72 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~---Ga--~~vivp~~~~~~~l----~~~-le~~DGVILsGG 72 (426)
+|||+... ..+.|.+.+-...-+.+.+. |. .+++.....+.+.. ... -..+||||+.+.
T Consensus 1 ~Ig~i~~~--~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 69 (272)
T cd06300 1 KIGLSNSY--AGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPA 69 (272)
T ss_pred CeEEeccc--cCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 36666532 23556666666667778888 87 34555443332221 111 137999999865
No 215
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=58.67 E-value=27 Score=34.72 Aligned_cols=83 Identities=22% Similarity=0.235 Sum_probs=45.8
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChh-----hhhhhcCCCCEEEECCCCCCCCCcccccCCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVH-----MLLDSFEPIHGVLLCEGEDIDPSLYEAETSN 86 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~-----~l~~~le~~DGVILsGG~didp~~y~~~~~~ 86 (426)
.|+|+.+++... .......+..++...+-...+.+.....- .....-+.+|.++.-||.
T Consensus 2 ~~~i~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~ivvlGGD------------- 65 (281)
T COG0061 2 KVGIVGRPDKPE---ALKIAKRLYEFLKFKGVTVEVDQELAEELKDFADYVDDDEEKADLIVVLGGD------------- 65 (281)
T ss_pred eEEEEecCCcHH---HHHHHHHHHHHHHhcCceEEEechhhhhcccccccccccccCceEEEEeCCc-------------
Confidence 578888775422 22334455666776666655544211100 001111457777776762
Q ss_pred CChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHH
Q 014368 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (426)
Q Consensus 87 ~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~ 134 (426)
...+...+.+...++||+||=+|+
T Consensus 66 ------------------------GtlL~~~~~~~~~~~pilgin~G~ 89 (281)
T COG0061 66 ------------------------GTLLRAARLLARLDIPVLGINLGH 89 (281)
T ss_pred ------------------------HHHHHHHHHhccCCCCEEEEeCCC
Confidence 123456666666789999999993
No 216
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=58.37 E-value=34 Score=32.07 Aligned_cols=74 Identities=14% Similarity=0.117 Sum_probs=49.0
Q ss_pred ccccccchhHHHHHHHHCCCEEEEE-cCCCChhhhhhh-----cCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHh
Q 014368 24 NKFVDFVGEYHLDLIVGYGAVPAIV-PRVSGVHMLLDS-----FEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRR 97 (426)
Q Consensus 24 ~~~~~~v~~~yl~~l~~~Ga~~viv-p~~~~~~~l~~~-----le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~ 97 (426)
+.|...+....-++....|..+.++ +...+.+...+. -..+||||+.... +..
T Consensus 10 ~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~---~~~------------------ 68 (257)
T PF13407_consen 10 NPFWQQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVD---PDS------------------ 68 (257)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSS---TTT------------------
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCC---HHH------------------
Confidence 3466667777778899999999986 665554322222 2379999988652 210
Q ss_pred hcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehH
Q 014368 98 LHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRG 133 (426)
Q Consensus 98 ~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG 133 (426)
....++.+.+.++||..+=.+
T Consensus 69 ---------------~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 69 ---------------LAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp ---------------THHHHHHHHHTTSEEEEESST
T ss_pred ---------------HHHHHHHHhhcCceEEEEecc
Confidence 024677788899999985433
No 217
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=58.17 E-value=51 Score=30.74 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=36.8
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhh---hc--CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLD---SF--EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~---~l--e~~DGVILsGG 72 (426)
|+++... ..+.++.-+.....+++...|..++++....+.+...+ .+ ..+||||+.++
T Consensus 2 i~~v~~~--~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06284 2 ILVLVPD--IANPFFSEILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDG 64 (267)
T ss_pred EEEEECC--CCCccHHHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 4454432 23556666677788889999999888776544322211 11 36999999765
No 218
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=58.06 E-value=49 Score=31.03 Aligned_cols=59 Identities=5% Similarity=-0.100 Sum_probs=36.6
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhh----hhh-cCCCCEEEECCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHML----LDS-FEPIHGVLLCEG 72 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l----~~~-le~~DGVILsGG 72 (426)
+|||+... ..+.++.-+-...-+.+...|..+++.....+.+.. ... -..+||||+.+.
T Consensus 1 ~i~~~~~~--~~~~~~~~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06322 1 VIGASLLT--QQHPFYIELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPV 64 (267)
T ss_pred CeeEeecC--cccHHHHHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 36666532 235555666677777888999999887654333211 111 237999999754
No 219
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=57.69 E-value=44 Score=31.89 Aligned_cols=57 Identities=7% Similarity=0.091 Sum_probs=35.3
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhh----hhc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLL----DSF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~----~~l-e~~DGVILsGG 72 (426)
||++... ..+.|+.-+-....+++...|..++++... +.+... ... ..+||||+.+.
T Consensus 2 Ig~v~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~ 63 (289)
T cd01540 2 IGFIVKQ--PEEPWFQTEWKFAKKAAKEKGFTVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVP 63 (289)
T ss_pred eeeecCC--CCCcHHHHHHHHHHHHHHHcCCEEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccC
Confidence 5665532 235555555666778888999998877554 332221 111 36999999864
No 220
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=57.11 E-value=49 Score=32.40 Aligned_cols=50 Identities=4% Similarity=-0.041 Sum_probs=34.1
Q ss_pred cccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECCC
Q 014368 23 KNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCEG 72 (426)
Q Consensus 23 ~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----e~~DGVILsGG 72 (426)
.+.|++-+.+..-+++...|..+++.+...+.....+.+ ..+||||+.+.
T Consensus 9 ~~~~~~~~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~ 63 (302)
T TIGR02634 9 RLERWQKDRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQ 63 (302)
T ss_pred chhhHHHHHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 456666677778888999999998877654433221111 36999999864
No 221
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=56.98 E-value=40 Score=31.93 Aligned_cols=58 Identities=7% Similarity=-0.107 Sum_probs=36.3
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhh----hhhc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHML----LDSF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l----~~~l-e~~DGVILsGG 72 (426)
||++.-. ..+.|..-+-....++....|..+++.....+.+.. ...+ ..+||||+.+.
T Consensus 2 ~g~~~~~--~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06309 2 VGFSQVG--AESPWRTAETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPV 64 (273)
T ss_pred eeeccCC--CCCHHHHHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4554432 235565666677778888999999988754443222 1111 36999999764
No 222
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=56.47 E-value=58 Score=30.79 Aligned_cols=58 Identities=16% Similarity=0.037 Sum_probs=34.8
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC--Chhh----hhhhc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS--GVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~--~~~~----l~~~l-e~~DGVILsGG 72 (426)
|||+... ..+.++..+-...-+++.+.|..+++...+. +... +...+ ..+||||+.+.
T Consensus 2 igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (275)
T cd06320 2 YGVVLKT--LSNEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPI 66 (275)
T ss_pred eeEEEec--CCCHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 5666532 2345556666667778889999888765322 2221 11111 36999998754
No 223
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=56.37 E-value=14 Score=35.76 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=19.0
Q ss_pred HHHHHHHHcCCCEEEEehHHHHHHHHhCCc
Q 014368 115 RLAKLCLERNIPYLGICRGSQVLNVACGGT 144 (426)
Q Consensus 115 ~lir~ale~~iPILGIClG~QlLava~GG~ 144 (426)
+.|+...+++=-+||||.|. .+|+.
T Consensus 73 a~i~~yvk~GG~fLGiCAG~-----YFg~~ 97 (253)
T COG4285 73 ARIKNYVKEGGNFLGICAGG-----YFGSA 97 (253)
T ss_pred hhHHHHHhcCCeEEEEeccc-----cccce
Confidence 46667777888999999885 45655
No 224
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=55.89 E-value=33 Score=36.54 Aligned_cols=63 Identities=10% Similarity=0.144 Sum_probs=35.3
Q ss_pred CCCCCcEEEEEccCcCCcccccccchhHHHHHHHHC--CCEEEEEcCCC-C---hhhh------hhhcCCCCEEEEC-CC
Q 014368 6 LSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY--GAVPAIVPRVS-G---VHML------LDSFEPIHGVLLC-EG 72 (426)
Q Consensus 6 ~~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~--Ga~~vivp~~~-~---~~~l------~~~le~~DGVILs-GG 72 (426)
|+.+..+|||++.++. .+-.-++..+... .+.+++.|... + ..+| .+....+|-||+. ||
T Consensus 131 LP~~p~~IGVITS~tg-------AairDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGG 203 (440)
T COG1570 131 LPFFPKKIGVITSPTG-------AALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGG 203 (440)
T ss_pred CCCCCCeEEEEcCCch-------HHHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCc
Confidence 4455567999998853 2223344555543 35666666532 1 2222 2334569999998 55
Q ss_pred CCC
Q 014368 73 EDI 75 (426)
Q Consensus 73 ~di 75 (426)
+++
T Consensus 204 GSi 206 (440)
T COG1570 204 GSI 206 (440)
T ss_pred chH
Confidence 543
No 225
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=55.86 E-value=47 Score=31.31 Aligned_cols=58 Identities=10% Similarity=-0.008 Sum_probs=33.8
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHH--CCCEEEEEcCCCChhhhhhh-----cCCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVG--YGAVPAIVPRVSGVHMLLDS-----FEPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~--~Ga~~vivp~~~~~~~l~~~-----le~~DGVILsGG 72 (426)
|||+-.. ..+.++.-+-....+++.+ .|..+++.+...+.+...+. -..+||||+.+.
T Consensus 2 Ig~v~~~--~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~ 66 (271)
T cd06321 2 IGVSVGD--LGNPFFVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAV 66 (271)
T ss_pred eEEEecc--cCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 5555432 2345555566667778888 77777666554443222111 237999999764
No 226
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=55.80 E-value=23 Score=36.38 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 114 LRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 114 ~~lir~ale~~iPILGIClG~QlLava 140 (426)
...++.+..++.++-|||-|.-+|+.+
T Consensus 98 ~~~Lr~~~~~G~~l~gictGaf~LA~a 124 (328)
T COG4977 98 LAWLRRAARRGARLGGLCTGAFVLAEA 124 (328)
T ss_pred HHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence 467777788999999999999999875
No 227
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=55.76 E-value=41 Score=35.01 Aligned_cols=86 Identities=15% Similarity=0.184 Sum_probs=53.0
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhc-CCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhH
Q 014368 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSF-EPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (426)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-e~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~ 111 (426)
..++||++.--.|+++.-..+.++..... ..+|||+++|.++=.. +..+. . .
T Consensus 214 ~di~wlr~~~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrql---d~~~~------------------t------~ 266 (367)
T PLN02493 214 KDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQL---DYVPA------------------T------I 266 (367)
T ss_pred HHHHHHHhccCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCCC---CCchh------------------H------H
Confidence 35789999888899998766655443332 3799999998432111 11110 0 0
Q ss_pred HHHHHHHHHHHcCCCEE---EEehHHHHH-HHHhCCcc
Q 014368 112 IELRLAKLCLERNIPYL---GICRGSQVL-NVACGGTL 145 (426)
Q Consensus 112 ~e~~lir~ale~~iPIL---GIClG~QlL-ava~GG~l 145 (426)
..+.-+..+...++||+ ||..|..++ +.++|++.
T Consensus 267 ~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~a 304 (367)
T PLN02493 267 SALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 304 (367)
T ss_pred HHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCE
Confidence 01222334444569999 999999988 55778763
No 228
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=55.03 E-value=21 Score=27.01 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhcCHHHHHhHHHHHHH
Q 014368 377 EERERLARNVIGKMSVEQLSDLMSFYFT 404 (426)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (426)
+-+..++..+-..+|-++|.+++.||..
T Consensus 4 ~~~~~~~~~y~~~ft~~El~~i~~FY~S 31 (64)
T PF09832_consen 4 KMIDQMAPIYAEHFTEEELDAILAFYES 31 (64)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHCC
Confidence 4567889999999999999999999974
No 229
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=54.95 E-value=71 Score=30.08 Aligned_cols=58 Identities=9% Similarity=0.097 Sum_probs=35.3
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChh----hhhhh-cCCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVH----MLLDS-FEPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~----~l~~~-le~~DGVILsGG 72 (426)
|||+... ..+.|+..+-....+.+...|..++++....+.+ .+... -..+||||+.+.
T Consensus 2 i~vi~~~--~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (277)
T cd06319 2 IAYIVSD--LRIPFWQIMGRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPT 64 (277)
T ss_pred eEEEeCC--CCchHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5655432 2345555666667778888999988876543332 11121 247999998754
No 230
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=54.59 E-value=44 Score=28.20 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=16.4
Q ss_pred HHHHHHHHHcCCCEEEEeh
Q 014368 114 LRLAKLCLERNIPYLGICR 132 (426)
Q Consensus 114 ~~lir~ale~~iPILGICl 132 (426)
..+++.|.+++.|+++||-
T Consensus 64 ~~~~~~a~~~g~~vi~iT~ 82 (128)
T cd05014 64 LNLLPHLKRRGAPIIAITG 82 (128)
T ss_pred HHHHHHHHHCCCeEEEEeC
Confidence 4688889999999999984
No 231
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=54.52 E-value=67 Score=31.35 Aligned_cols=59 Identities=7% Similarity=0.066 Sum_probs=35.2
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChh----hhhhhcC---CCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVH----MLLDSFE---PIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~----~l~~~le---~~DGVILsGG 72 (426)
|||+... ...+.|+..+-...-+.+.+.|..++++....+.+ .+...+. .+||||+.+.
T Consensus 2 Igvi~~~-~~~~~~~~~~~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~ 67 (305)
T cd06324 2 VVFLNPG-KSDEPFWNSVARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNE 67 (305)
T ss_pred eEEecCC-CCCCcHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 4555422 11345555555666677888999988876543332 2222333 6999999754
No 232
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=53.51 E-value=61 Score=31.53 Aligned_cols=58 Identities=10% Similarity=0.143 Sum_probs=35.1
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEE-cCCCChhhhh----hhc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIV-PRVSGVHMLL----DSF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~viv-p~~~~~~~l~----~~l-e~~DGVILsGG 72 (426)
|+++... ..+.|...+-....+.+.+.|..++++ +...+.+... ..+ ..+||||+.+.
T Consensus 2 I~vi~~~--~~~~f~~~i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~ 65 (298)
T cd06302 2 IAFVPKV--TGIPYFNRMEEGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPN 65 (298)
T ss_pred EEEEEcC--CCChHHHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 5555532 224455556666777888899998875 5444433222 221 36999999754
No 233
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=53.32 E-value=51 Score=30.72 Aligned_cols=48 Identities=8% Similarity=0.075 Sum_probs=30.1
Q ss_pred ccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhh-----cCCCCEEEECC
Q 014368 24 NKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDS-----FEPIHGVLLCE 71 (426)
Q Consensus 24 ~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~-----le~~DGVILsG 71 (426)
+.++.-+-....+.+.+.|..+++.+...+.+...+. -..+||||+.+
T Consensus 11 ~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~ 63 (268)
T cd06323 11 NPFFVTLKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINP 63 (268)
T ss_pred CHHHHHHHHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 4455555566677788899888887654444322111 13699999964
No 234
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=52.82 E-value=86 Score=29.14 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=35.3
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChh---hhhhh-cCCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVH---MLLDS-FEPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~---~l~~~-le~~DGVILsGG 72 (426)
||++... ..+.++.-+-....+.+...|..+.++....+.+ .+... -..+||||+.+.
T Consensus 2 I~~i~~~--~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 63 (266)
T cd06278 2 IGVVVAD--LDNPFYSELLEALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSG 63 (266)
T ss_pred EEEEeCC--CCCchHHHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecC
Confidence 5665532 2345555555566778899999998887654321 11111 147999999765
No 235
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.98 E-value=46 Score=32.99 Aligned_cols=45 Identities=9% Similarity=-0.004 Sum_probs=29.0
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG 72 (426)
.|+|+.+... . ..-+.....+|+.+.|..+++- .+.+|-+|.-||
T Consensus 4 ~i~iv~~~~~-~---a~~~~~~l~~~l~~~g~~~~~~------------~~~~D~vi~lGG 48 (264)
T PRK03501 4 NLFFFYKRDK-E---LVEKVKPLKKIAEEYGFTVVDH------------PKNANIIVSIGG 48 (264)
T ss_pred EEEEEECCCH-H---HHHHHHHHHHHHHHCCCEEEcC------------CCCccEEEEECC
Confidence 6888876543 1 1123444567888999877632 134798999999
No 236
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=51.96 E-value=40 Score=32.99 Aligned_cols=59 Identities=8% Similarity=0.023 Sum_probs=40.6
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----e~~DGVILsGG 72 (426)
..|||+.... .|.|..-+-...-+.+.+.|..++++....+.+.- +.+ ..+||||+++-
T Consensus 2 ~~IGvivp~~--~npff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e-~~i~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 2 KTIGVIVPDI--SNPFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKE-EYIELLLQRRVDGIILASS 65 (279)
T ss_dssp CEEEEEESSS--TSHHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHH-HHHHHHHHTTSSEEEEESS
T ss_pred CEEEEEECCC--CCcHHHHHHHHHHHHHHHcCCEEEEecCCCchHHH-HHHHHHHhcCCCEEEEecc
Confidence 3677776543 46666666677788899999999988766554322 221 37999999943
No 237
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.52 E-value=44 Score=29.95 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=13.8
Q ss_pred cCCCEEEEehHHHHHHHHhCC
Q 014368 123 RNIPYLGICRGSQVLNVACGG 143 (426)
Q Consensus 123 ~~iPILGIClG~QlLava~GG 143 (426)
.++|+.|+| +|-|..-.|-
T Consensus 115 ~~kkliGvC--fm~mF~ragW 133 (154)
T COG4090 115 GNKKLIGVC--FMNMFERAGW 133 (154)
T ss_pred CCCceEEee--HHHHHHHcCc
Confidence 568999999 5666665554
No 238
>PRK03673 hypothetical protein; Provisional
Probab=51.43 E-value=49 Score=34.81 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=39.6
Q ss_pred CcEEEEEccCc-CCcccccccchhHHHHHHHHCCCEEEEEcCC-CChhhhh----hhcCCCCEEEECCCCC
Q 014368 10 LPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLL----DSFEPIHGVLLCEGED 74 (426)
Q Consensus 10 ~P~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~----~~le~~DGVILsGG~d 74 (426)
+|++.|++-.+ .-.++.++-=..+..+++...|..+..+... .+.+.|. ..++.+|-||++||-+
T Consensus 1 ~~~v~Iis~GdEll~G~i~dtN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlG 71 (396)
T PRK03673 1 MLRVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLG 71 (396)
T ss_pred CCEEEEEEecccCCCCeEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCC
Confidence 47788887554 3334444443333445688999987644432 3344443 4456799999999853
No 239
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=50.63 E-value=61 Score=30.57 Aligned_cols=58 Identities=3% Similarity=-0.025 Sum_probs=31.2
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHC-CCEEEEEcCCCChhhhhhh-----cCCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGY-GAVPAIVPRVSGVHMLLDS-----FEPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~-Ga~~vivp~~~~~~~l~~~-----le~~DGVILsGG 72 (426)
||++... -.+.|..-+.....+.+... |..+++.....+.+...+. -..+||||+.+.
T Consensus 2 ig~~~~~--~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 65 (270)
T cd06308 2 IGFSQCN--LADPWRAAMNDEIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPN 65 (270)
T ss_pred EEEEeeC--CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecC
Confidence 5555422 12344444445555667775 7788776543333221111 137999999864
No 240
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=50.54 E-value=88 Score=31.60 Aligned_cols=59 Identities=10% Similarity=-0.005 Sum_probs=38.5
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhh----h-cCCCCEEEECC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLD----S-FEPIHGVLLCE 71 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~----~-le~~DGVILsG 71 (426)
-.||++... ..|.+..-+-...-+.+...|..+++.....+.+.... . -..+||||+.|
T Consensus 59 ~~Ig~i~p~--~~~~~~~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 59 KTIGLVVPD--ITNPFFAEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred CEEEEEeCC--CCCchHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 367776552 22345555555667788889999999987765432111 1 13799999998
No 241
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=50.39 E-value=84 Score=29.46 Aligned_cols=58 Identities=9% Similarity=0.042 Sum_probs=35.3
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhh-----cCCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDS-----FEPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~-----le~~DGVILsGG 72 (426)
|||+... ..+.+..-+-....+.+.+.|..+++...+.+.+...+. -..+||||+.+.
T Consensus 2 igvi~p~--~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06285 2 IGVLVPR--LTDTVMATMYEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGDA 64 (265)
T ss_pred EEEEeCC--CCCccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5555432 134555555666778899999998876654443321111 237999999753
No 242
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=50.34 E-value=78 Score=29.96 Aligned_cols=57 Identities=14% Similarity=0.067 Sum_probs=37.8
Q ss_pred EEEEEccCcC---CcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECC
Q 014368 12 RVLIVSRRSV---RKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCE 71 (426)
Q Consensus 12 ~igI~~~~~~---~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsG 71 (426)
+|||+.-++. -.+.+...+-....+++...|..+++........ .....+||||+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~---~~~~~vdgii~~~ 60 (270)
T cd01544 1 RIAIVQWYSEEEELDDPYYLSIRLGIEKRAQELGIELTKFFRDDDLL---EILEDVDGIIAIG 60 (270)
T ss_pred CeEEEEeccccccccCccHHHHHHHHHHHHHHcCCEEEEEeccchhH---HhccCcCEEEEec
Confidence 4677766442 2355666666667788888999998876533222 2346799999875
No 243
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=50.28 E-value=1.1e+02 Score=29.19 Aligned_cols=59 Identities=17% Similarity=0.013 Sum_probs=36.2
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhh-----cCCCCEEEECCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDS-----FEPIHGVLLCEG 72 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~-----le~~DGVILsGG 72 (426)
.||++... ..+.+..-+-....+.+.+.|..+++.....+.+...+. -..+||||+.+.
T Consensus 2 ~ig~i~~~--~~~~~~~~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~ 65 (280)
T cd06315 2 NIIFVASD--LKNGGILGVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGV 65 (280)
T ss_pred eEEEEecc--cCCcHHHHHHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 46666532 234555555666778889999988877654333221111 137999999864
No 244
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=50.14 E-value=73 Score=31.11 Aligned_cols=59 Identities=5% Similarity=-0.040 Sum_probs=34.7
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHH--CCCEEEEEcCCCChh----hhhhh-cCCCCEEEECCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVG--YGAVPAIVPRVSGVH----MLLDS-FEPIHGVLLCEG 72 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~--~Ga~~vivp~~~~~~----~l~~~-le~~DGVILsGG 72 (426)
+|||+... ..+.|.+-+.....+++.. .|..+++.+...+.+ .+... -..+||+|+.+.
T Consensus 1 ~Igviv~~--~~~~~~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~ 66 (303)
T cd01539 1 KIGVFLYK--FDDTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLV 66 (303)
T ss_pred CeEEEeeC--CCChHHHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 35665432 2344555555666777887 787777777654432 12221 237999999754
No 245
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=50.05 E-value=91 Score=29.59 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=35.7
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC--Chh----hhhhhc-CCCCEEEECCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS--GVH----MLLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~--~~~----~l~~~l-e~~DGVILsGG 72 (426)
+|||+... ..+.|+.-+-...-+++...|..++++.... +.+ .+.... ..+||||+.+.
T Consensus 1 ~Igvi~~~--~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~ 66 (268)
T cd06306 1 KLCVLYPH--LKDAYWLSVNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAV 66 (268)
T ss_pred CeEEEcCC--CCCHHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 35666532 2355555555666778889999998875432 221 222111 37999999864
No 246
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=49.82 E-value=1.1e+02 Score=29.57 Aligned_cols=61 Identities=10% Similarity=-0.037 Sum_probs=37.8
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhh----hc-CCCCEEEECCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLD----SF-EPIHGVLLCEG 72 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~----~l-e~~DGVILsGG 72 (426)
...|||+... ..+.|+.-+.....+.+.+.|..+++.....+.+.... .. ..+||+|+.+.
T Consensus 26 ~~~I~vi~~~--~~~~f~~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~ 91 (295)
T PRK10653 26 KDTIALVVST--LNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 91 (295)
T ss_pred CCeEEEEecC--CCChHHHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3567877632 23455556666677788999999988754333332211 11 36999999754
No 247
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=49.79 E-value=76 Score=30.07 Aligned_cols=58 Identities=16% Similarity=0.042 Sum_probs=36.1
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChh---hhhhhc--CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVH---MLLDSF--EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~---~l~~~l--e~~DGVILsGG 72 (426)
|||+... ..+.+..-+-....+++.+.|..+++.....+.+ .+...+ ..+||||+.+.
T Consensus 2 Igvi~p~--~~~~~~~~~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (269)
T cd06297 2 ISVLLPV--VATEFYRRLLEGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASY 64 (269)
T ss_pred EEEEeCC--CcChhHHHHHHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 5666532 2345555556677788999999999887543221 121212 26999999865
No 248
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=49.74 E-value=62 Score=32.95 Aligned_cols=66 Identities=9% Similarity=0.046 Sum_probs=39.2
Q ss_pred EEEEEccCc-CCcccccccchhHHHHHHHHCCCEEEEEcCCC-Chhhhh----hh-cCCCCEEEECCCCCCCC
Q 014368 12 RVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLL----DS-FEPIHGVLLCEGEDIDP 77 (426)
Q Consensus 12 ~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~----~~-le~~DGVILsGG~didp 77 (426)
+++|++-.+ ...++..+.-+.....++.+.|+.++...... +.+.|. +. .+.+|-||.+||.++.|
T Consensus 157 ~~aIltvsde~~~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~g~ 229 (312)
T PRK03604 157 SAAVLVLSDSIAAGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGLGP 229 (312)
T ss_pred EEEEEEECCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCCCC
Confidence 545654332 34444455545556667999999887554332 333333 33 24689999999976544
No 249
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=49.46 E-value=95 Score=29.25 Aligned_cols=58 Identities=7% Similarity=0.046 Sum_probs=35.5
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-e~~DGVILsGG 72 (426)
|||+... ..+.+...+-....+++.+.|..+++.....+.+. +...+ ..+||+|+.++
T Consensus 2 igvv~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (273)
T cd01541 2 IGVITTY--ISDYIFPSIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPT 64 (273)
T ss_pred eEEEeCC--ccchhHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 5666532 22445555566677888999999987765433321 11111 37999999765
No 250
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=49.31 E-value=92 Score=30.62 Aligned_cols=60 Identities=10% Similarity=0.078 Sum_probs=37.1
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhh----hh-cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLL----DS-FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~----~~-le~~DGVILsGG 72 (426)
..||++... ..+.|+..+-....+++...|..++++....+.+... .. -..+||||+.+.
T Consensus 65 ~~Igvv~~~--~~~~~~~~i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 129 (342)
T PRK10014 65 GVIGLIVRD--LSAPFYAELTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGA 129 (342)
T ss_pred CEEEEEeCC--CccchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 467777633 2344555556666778888998887776543332211 11 136999999875
No 251
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=49.14 E-value=52 Score=34.77 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=37.6
Q ss_pred EEEEEccCc-CCcccccccchhHHHHHHHHCCCEEEEEcCCC-Ch----hhhhhhcCCCCEEEECCCCC
Q 014368 12 RVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GV----HMLLDSFEPIHGVLLCEGED 74 (426)
Q Consensus 12 ~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~----~~l~~~le~~DGVILsGG~d 74 (426)
+++|++-.+ .-.++..+.-..+...++...|..+....... +. +.+...++.+|-||++||-+
T Consensus 2 ~v~Ii~tGdEll~G~i~dtN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGlg 70 (413)
T TIGR00200 2 KAEIISVGDELLLGQIVNTNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGLG 70 (413)
T ss_pred EEEEEEECccccCCcEEEchHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 456665433 33444445434445567889998876443222 23 33445566899999999854
No 252
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=48.70 E-value=84 Score=30.22 Aligned_cols=58 Identities=7% Similarity=-0.117 Sum_probs=33.5
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEE-cCCCChhh----hhh-hcCCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIV-PRVSGVHM----LLD-SFEPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~viv-p~~~~~~~----l~~-~le~~DGVILsGG 72 (426)
||++... ..+.|...+-....+++...|..++++ +...+.+. +.. .-..+||||+.+.
T Consensus 2 i~~i~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~ 65 (294)
T cd06316 2 AAIVMHT--SGSDWSNAQVRGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPV 65 (294)
T ss_pred eEEEecC--CCChHHHHHHHHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 4555422 224455556666678889999998865 33333321 212 1237999999753
No 253
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=48.46 E-value=75 Score=30.05 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=33.9
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEc-CCCChhhh----hhhc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVP-RVSGVHML----LDSF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp-~~~~~~~l----~~~l-e~~DGVILsGG 72 (426)
||++... .+.|+..+....-+.+.+.|..+.++. ...+.+.. .... ..+||||+.+.
T Consensus 2 i~~v~~~---~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 64 (271)
T cd06314 2 IAVVTNG---ASPFWKIAEAGVKAAGKELGVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPI 64 (271)
T ss_pred eEEEcCC---CcHHHHHHHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 5666532 245555555666678889999888763 32232211 1111 37999999864
No 254
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=48.14 E-value=82 Score=29.54 Aligned_cols=49 Identities=8% Similarity=0.069 Sum_probs=31.1
Q ss_pred ccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhh-----cCCCCEEEECCC
Q 014368 24 NKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDS-----FEPIHGVLLCEG 72 (426)
Q Consensus 24 ~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~-----le~~DGVILsGG 72 (426)
+.+...+-....+++.+.|..+++.....+.+...+. -..+||||+.+.
T Consensus 12 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (275)
T cd06317 12 HSYQTTYNKAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPT 65 (275)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 4455555666677788899998887654443222111 137999999764
No 255
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=47.65 E-value=1.1e+02 Score=29.81 Aligned_cols=60 Identities=7% Similarity=-0.010 Sum_probs=35.7
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh---hhhh--cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM---LLDS--FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~---l~~~--le~~DGVILsGG 72 (426)
..|||+... ..+.|+.-+-...-+++...|..+++.....+.+. +.+. -..+||||+.+.
T Consensus 62 ~~Igvv~~~--~~~~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 126 (328)
T PRK11303 62 RSIGLIIPD--LENTSYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTS 126 (328)
T ss_pred ceEEEEeCC--CCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 467777532 22444444555666778889999887654333321 1111 136999999865
No 256
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=46.67 E-value=66 Score=36.13 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=40.6
Q ss_pred CcEEEEEccCc-CC--------cccccccchhHHHHHHHHCCCEEEEEcCC-CChhhhh----hhcC-CCCEEEECCCCC
Q 014368 10 LPRVLIVSRRS-VR--------KNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLL----DSFE-PIHGVLLCEGED 74 (426)
Q Consensus 10 ~P~igI~~~~~-~~--------~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~----~~le-~~DGVILsGG~d 74 (426)
+|+|+|++..+ .. .++..+.-......++.+.|+.++.+... .+.+.|. +.++ .+|-||++||.+
T Consensus 181 kprV~visTGdELv~~g~~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DlvItTGGts 260 (659)
T PLN02699 181 RPTVAILSTGDELVEPTTGTLGRGQIRDSNRAMLLAAAIQQQCKVVDLGIARDDEEELERILDEAISSGVDILLTSGGVS 260 (659)
T ss_pred CCeEEEEeCCcccccCCCCCCCCCcEEeChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 69999997543 21 23334443334555788999988755432 3344343 3333 689999999965
Q ss_pred C
Q 014368 75 I 75 (426)
Q Consensus 75 i 75 (426)
+
T Consensus 261 ~ 261 (659)
T PLN02699 261 M 261 (659)
T ss_pred C
Confidence 4
No 257
>PLN02979 glycolate oxidase
Probab=46.53 E-value=73 Score=33.24 Aligned_cols=86 Identities=15% Similarity=0.180 Sum_probs=53.0
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcC-CCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhH
Q 014368 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFE-PIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (426)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~le-~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~ 111 (426)
..++||++.--.|+++.-..+.++.....+ .+|||+++|.++-..+ ..+. . .
T Consensus 213 ~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld---~~p~----------------t--------~ 265 (366)
T PLN02979 213 KDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLD---YVPA----------------T--------I 265 (366)
T ss_pred HHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCC---Cchh----------------H--------H
Confidence 468899998888999887665554443333 7999999985421110 0010 0 0
Q ss_pred HHHHHHHHHHHcCCCEE---EEehHHHHH-HHHhCCcc
Q 014368 112 IELRLAKLCLERNIPYL---GICRGSQVL-NVACGGTL 145 (426)
Q Consensus 112 ~e~~lir~ale~~iPIL---GIClG~QlL-ava~GG~l 145 (426)
..+.-++.+...++||+ ||..|..++ +.++|++.
T Consensus 266 ~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAda 303 (366)
T PLN02979 266 SALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 303 (366)
T ss_pred HHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCE
Confidence 01222334444568998 999999887 55778763
No 258
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=46.12 E-value=1.1e+02 Score=30.18 Aligned_cols=59 Identities=15% Similarity=-0.000 Sum_probs=35.9
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhh-cCCCCEEEECC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDS-FEPIHGVLLCE 71 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~-le~~DGVILsG 71 (426)
..||++... ..+.|+.-+-....+.+...|..+++.+...+.+. +... -..+||||+.+
T Consensus 64 ~~Igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~ 127 (331)
T PRK14987 64 RAIGVLLPS--LTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTE 127 (331)
T ss_pred CEEEEEeCC--CcchhHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 467776532 22445555556667778889998888765444322 1111 13799999975
No 259
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=45.93 E-value=96 Score=29.02 Aligned_cols=58 Identities=10% Similarity=-0.046 Sum_probs=34.6
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-e~~DGVILsGG 72 (426)
|||+... -.+.|..-+-....+++.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 2 i~vi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (270)
T cd06296 2 IGLVFPD--LDSPWASEVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTP 64 (270)
T ss_pred eEEEECC--CCCccHHHHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 5555522 12445555556667788889999888765543321 22222 36999999754
No 260
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=45.80 E-value=1.1e+02 Score=28.40 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=32.7
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-e~~DGVILsGG 72 (426)
|+|+... ..+.++..+-...-+++.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 2 I~vi~~~--~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (268)
T cd06289 2 IGLVIND--LTNPFFAELAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPA 64 (268)
T ss_pred EEEEecC--CCcchHHHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5555432 12344444445555678889988877654333322 11111 36899999865
No 261
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=45.72 E-value=96 Score=30.43 Aligned_cols=61 Identities=8% Similarity=-0.030 Sum_probs=35.6
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCC--hhhhh-hh-cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG--VHMLL-DS-FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~--~~~l~-~~-le~~DGVILsGG 72 (426)
.+++|+.|+.+..++....+ ....+.+.+.|..+.+...... ...+. +. -+.+|.||+.||
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~-~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GG 66 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPL-REVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGG 66 (293)
T ss_pred ceEEEEECCCccchhhHHHH-HHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECC
Confidence 57888888866443322222 2246678888988776554322 11111 11 235799999999
No 262
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.95 E-value=81 Score=30.95 Aligned_cols=37 Identities=8% Similarity=0.034 Sum_probs=23.2
Q ss_pred chhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 014368 30 VGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (426)
Q Consensus 30 v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG 72 (426)
+.....+++.+.|..+..... .. .....+|-||.-||
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~---~~---~~~~~~d~vi~iGG 50 (256)
T PRK14075 14 EAKFLKEKISKEHEVVEFCEA---SA---SGKVTADLIIVVGG 50 (256)
T ss_pred HHHHHHHHHHHcCCeeEeecc---cc---cccCCCCEEEEECC
Confidence 344566778888876664321 11 12246899999999
No 263
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.93 E-value=94 Score=29.36 Aligned_cols=49 Identities=12% Similarity=0.013 Sum_probs=31.7
Q ss_pred ccccccchhHHHHHHHHCCCEEEEEcCCC-Chhhhhhh-----cCCCCEEEECCC
Q 014368 24 NKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLDS-----FEPIHGVLLCEG 72 (426)
Q Consensus 24 ~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~-----le~~DGVILsGG 72 (426)
+.++.-+-...-+++.+.|..+++..... +.+...+. -..+||+|+.+.
T Consensus 12 ~~~~~~~~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 66 (271)
T cd06312 12 DPFWTVVKNGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIP 66 (271)
T ss_pred CcHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 45555556667778888999988876554 43322111 136999999865
No 264
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=44.50 E-value=84 Score=29.40 Aligned_cols=58 Identities=7% Similarity=0.004 Sum_probs=35.6
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhh----c-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDS----F-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~----l-e~~DGVILsGG 72 (426)
|||+... ..+.+...+.....+++.+.|..+++.....+.+...+. . ..+||||+.+.
T Consensus 2 I~vi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (265)
T cd06291 2 IGLIVPT--ISNPFFSELARAVEKELYKKGYKLILCNSDNDPEKEREYLEMLRQNQVDGIIAGTH 64 (265)
T ss_pred EEEEECC--CCChhHHHHHHHHHHHHHHCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5555532 124455556666778889999998887654333322111 1 36999999765
No 265
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=43.63 E-value=1.4e+02 Score=27.85 Aligned_cols=58 Identities=7% Similarity=-0.063 Sum_probs=35.1
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCC-hh---hhhh-hc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG-VH---MLLD-SF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~-~~---~l~~-~l-e~~DGVILsGG 72 (426)
|||+... ..+.++..+-....+.+.+.|..++++..... .+ .+.+ .. ..+||||+.+.
T Consensus 2 i~vi~~~--~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (264)
T cd01574 2 IGVVTTD--LALHGPSSTLAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAP 65 (264)
T ss_pred EEEEeCC--CCcccHHHHHHHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5666532 23455555666677788889998887764322 11 1111 11 36999999765
No 266
>PRK08211 putative dehydratase; Provisional
Probab=43.55 E-value=51 Score=36.79 Aligned_cols=49 Identities=14% Similarity=0.053 Sum_probs=32.5
Q ss_pred CCCCCCCCCcEEEEEccCc--------------CCcccccccchhHHHHHHHHCCCEEEEEcC
Q 014368 2 AAHDLSVILPRVLIVSRRS--------------VRKNKFVDFVGEYHLDLIVGYGAVPAIVPR 50 (426)
Q Consensus 2 ~~~~~~~~~P~igI~~~~~--------------~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~ 50 (426)
|.+|-.-.+|.|+|++.++ ...+....-+.+..-+.+.++|+.|+-++.
T Consensus 53 G~~~~dl~kP~IgI~nt~~~~~~~~~~~~~~~~~pgh~hL~~l~~~vk~gi~~aGG~P~ef~t 115 (655)
T PRK08211 53 GWDPARLLGKQFLILSTQGGIRAADGTPIALGYHTGHWEVGLLMKAAAEEIKRNGGIPFAGYV 115 (655)
T ss_pred CCCHHHcCCCEEEEEeCCccccccccccccCCCcCCchhHHHHHHHHHHHHHHcCCeeEEeCC
Confidence 3333334689999999876 223333444555566678889999997764
No 267
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=43.47 E-value=37 Score=35.09 Aligned_cols=84 Identities=23% Similarity=0.338 Sum_probs=49.8
Q ss_pred HHHHHHHCCCEEEEEcCCCChhhhhhhcC-CCCEEEECC--CCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhh
Q 014368 34 HLDLIVGYGAVPAIVPRVSGVHMLLDSFE-PIHGVLLCE--GEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKD 110 (426)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~le-~~DGVILsG--G~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd 110 (426)
.++++++.--.|+||.-..+.++.....+ .+|||+++| |-..| ++..+
T Consensus 216 ~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d---~~~~~-------------------------- 266 (356)
T PF01070_consen 216 DIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLD---WGPPT-------------------------- 266 (356)
T ss_dssp HHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSST---TS-BH--------------------------
T ss_pred HHHHHhcccCCceEEEecccHHHHHHHHhcCCCEEEecCCCcccCc---ccccc--------------------------
Confidence 58899988888988876555555443333 799999996 43332 11000
Q ss_pred HHHHHHHHHHHHcCCCEE---EEehHHHHH-HHHhCCccc
Q 014368 111 SIELRLAKLCLERNIPYL---GICRGSQVL-NVACGGTLY 146 (426)
Q Consensus 111 ~~e~~lir~ale~~iPIL---GIClG~QlL-ava~GG~l~ 146 (426)
...+.-++.+...++||+ ||..|.-++ +.++|++..
T Consensus 267 ~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v 306 (356)
T PF01070_consen 267 IDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAV 306 (356)
T ss_dssp HHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEE
T ss_pred ccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeE
Confidence 111234455555679999 899999776 567788743
No 268
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=42.74 E-value=1.7e+02 Score=23.99 Aligned_cols=41 Identities=10% Similarity=0.008 Sum_probs=29.0
Q ss_pred hHHHHHHHHCCCEEEEE--cCCCChh--hhhhhcCCCCEEEECCC
Q 014368 32 EYHLDLIVGYGAVPAIV--PRVSGVH--MLLDSFEPIHGVLLCEG 72 (426)
Q Consensus 32 ~~yl~~l~~~Ga~~viv--p~~~~~~--~l~~~le~~DGVILsGG 72 (426)
..|-+.+.++|+..+.. ....... .+...+..+|.||+.=+
T Consensus 13 ~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~ 57 (97)
T PF10087_consen 13 RRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTD 57 (97)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeC
Confidence 34667789999999988 2222223 37777888899998765
No 269
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=42.73 E-value=1.3e+02 Score=29.70 Aligned_cols=60 Identities=7% Similarity=-0.014 Sum_probs=37.0
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhh----hhc-CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLL----DSF-EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~----~~l-e~~DGVILsGG 72 (426)
..|+|+... ..+.++..+-....+++.+.|..+++.....+.+... ... ..+||||+.++
T Consensus 60 ~~i~vi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 124 (341)
T PRK10703 60 KSIGLLATS--SEAPYFAEIIEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCS 124 (341)
T ss_pred CeEEEEeCC--CCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 367777533 2344555555666778888999988876544433211 111 36899999875
No 270
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=42.21 E-value=71 Score=29.38 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=33.6
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCC-----EEEEEcCCCCh----hhhhhhcCCCCEEEECC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA-----VPAIVPRVSGV----HMLLDSFEPIHGVLLCE 71 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga-----~~vivp~~~~~----~~l~~~le~~DGVILsG 71 (426)
.+|+|+..+ +....++-+-+.-++.+.+.|+ .++.||-..+. ..+.+. ..+||||..|
T Consensus 11 ~riaIV~sr--fn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~~-~~yDaiIaLG 77 (158)
T PRK12419 11 QRIAFIQAR--WHADIVDQARKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAKT-GRYAAIVAAA 77 (158)
T ss_pred CEEEEEEec--CCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhc-CCCCEEEEEE
Confidence 488888644 2233455556667888999994 33445532211 122222 3699999887
No 271
>PRK03670 competence damage-inducible protein A; Provisional
Probab=42.21 E-value=88 Score=30.79 Aligned_cols=62 Identities=11% Similarity=0.104 Sum_probs=33.6
Q ss_pred EEEEccCc-CCcccccccchhHHHHHHHHCCCEEEEEcCCC-Chhhhh----hhcC-CCCEEEECCCCC
Q 014368 13 VLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLL----DSFE-PIHGVLLCEGED 74 (426)
Q Consensus 13 igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~----~~le-~~DGVILsGG~d 74 (426)
++|++-.+ .-.++..+.=..+..+++...|..+.-+.... +.+.|. ..+. .+|-||++||-+
T Consensus 3 a~Ii~iGdEll~G~i~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlG 71 (252)
T PRK03670 3 AEIITVGDELLTGNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLG 71 (252)
T ss_pred EEEEEeCCcCcCCeEEehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCcc
Confidence 44544332 22333334333344566889998876444332 333333 3334 479999999854
No 272
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=41.72 E-value=1.4e+02 Score=27.95 Aligned_cols=58 Identities=9% Similarity=-0.073 Sum_probs=34.8
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhh-cCCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDS-FEPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~-le~~DGVILsGG 72 (426)
|||+... ..+.+..-+-....+.+.+.|..++++....+.+. +... -..+||||+.+.
T Consensus 2 igvi~p~--~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~ 64 (268)
T cd06270 2 IGLVVSD--LDGPFFGPLLSGVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSK 64 (268)
T ss_pred EEEEEcc--ccCcchHHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 4555432 23455555556667778889999987765443332 1111 137999999864
No 273
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=41.35 E-value=56 Score=35.99 Aligned_cols=44 Identities=14% Similarity=0.065 Sum_probs=32.3
Q ss_pred CCCCcEEEEEccCcC--CcccccccchhHHHHHHHHCCCEEEEEcC
Q 014368 7 SVILPRVLIVSRRSV--RKNKFVDFVGEYHLDLIVGYGAVPAIVPR 50 (426)
Q Consensus 7 ~~~~P~igI~~~~~~--~~~~~~~~v~~~yl~~l~~~Ga~~vivp~ 50 (426)
...+|.|||++.++. ..|....-+++..-+.++++|+.++-.+.
T Consensus 39 ~~~kP~IgI~~s~~d~~p~h~hl~~l~~~vk~~i~~aGg~p~ef~t 84 (575)
T COG0129 39 DFGKPIIGIANSYNDMVPGHQHLKDLAQLVKEGIREAGGVPVEFGT 84 (575)
T ss_pred HcCCCeEEEEeccccCcCchhhHHHHHHHHHHHHHHcCCceeEeCC
Confidence 347899999998763 45544445566667789999999987764
No 274
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.10 E-value=1.3e+02 Score=28.63 Aligned_cols=49 Identities=2% Similarity=-0.276 Sum_probs=31.6
Q ss_pred ccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhh----hc-CCCCEEEECCC
Q 014368 24 NKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLD----SF-EPIHGVLLCEG 72 (426)
Q Consensus 24 ~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~----~l-e~~DGVILsGG 72 (426)
+.|...+....-+++...|..+++.....+.+...+ .. ..+||||+.+.
T Consensus 11 ~~f~~~~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~ 64 (272)
T cd06313 11 ATWCAQGKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPL 64 (272)
T ss_pred ChHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 455555666667788889999988765444332221 11 36999999753
No 275
>PF08998 Epsilon_antitox: Bacterial epsilon antitoxin; InterPro: IPR015090 The epsilon antitoxin, produced by various prokaryotes, forms part of a post-segregational killing system, which is involved in the initiation of programmed cell death of plasmid-free cells. The protein is folded into a three-helix bundle that directly interacts with the zeta toxin, inactivating it []. ; GO: 0015643 toxin binding, 0009636 response to toxin, 0031342 negative regulation of cell killing; PDB: 1GVN_C 3Q8X_C.
Probab=41.00 E-value=31 Score=28.47 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=23.7
Q ss_pred HHHhhcCHHHHHhHHHHHHHHHHHhHHHHHH
Q 014368 385 NVIGKMSVEQLSDLMSFYFTMGQICSEVLEK 415 (426)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (426)
--|-+||.++|....+|+++|.+-...+++.
T Consensus 55 VnLFk~sl~eL~~v~~Yw~~mn~y~ksi~tK 85 (89)
T PF08998_consen 55 VNLFKMSLEELEAVHEYWRSMNNYIKSITTK 85 (89)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hcHHHhhHHHHHHHHHHHHHHHHHHHhccch
Confidence 3488999999999999999999877666543
No 276
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=40.92 E-value=1.6e+02 Score=28.69 Aligned_cols=60 Identities=7% Similarity=-0.066 Sum_probs=36.6
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhh-cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDS-FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~-le~~DGVILsGG 72 (426)
..||++... ..+.|+..+-....+.+.+.|..+++.....+.+. +... -..+||||+.+.
T Consensus 61 ~~Igvi~~~--~~~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 125 (327)
T TIGR02417 61 RTIGLVIPD--LENYSYARIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASC 125 (327)
T ss_pred ceEEEEeCC--CCCccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 467777632 22445455555666778889999988765444322 1111 136999999765
No 277
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=40.90 E-value=30 Score=34.00 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCCCEEEEehHH
Q 014368 114 LRLAKLCLERNIPYLGICRGS 134 (426)
Q Consensus 114 ~~lir~ale~~iPILGIClG~ 134 (426)
+..++.+...++|||||=.|.
T Consensus 39 L~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 39 LQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred HHHHHHhcCCCCeEEEEeCCC
Confidence 456666666789999998885
No 278
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.84 E-value=1.3e+02 Score=28.02 Aligned_cols=49 Identities=12% Similarity=0.004 Sum_probs=29.7
Q ss_pred ccccccchhHHHHHHHHCCCEEEEEcCCCCh---hhhhhhc--CCCCEEEECCC
Q 014368 24 NKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV---HMLLDSF--EPIHGVLLCEG 72 (426)
Q Consensus 24 ~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~---~~l~~~l--e~~DGVILsGG 72 (426)
+.+...+-...-+++.+.|..+++....... +.+...+ ..+||||+.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 69 (270)
T cd06294 16 NPFFIEVLRGISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYS 69 (270)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecC
Confidence 4455545555566788899888876543322 2233323 24999999864
No 279
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=39.81 E-value=1.5e+02 Score=28.90 Aligned_cols=60 Identities=10% Similarity=0.092 Sum_probs=35.8
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhh---hh--cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLL---DS--FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~---~~--le~~DGVILsGG 72 (426)
..|||+... ..+.|+..+-....+.+...|..+++.....+.+... +. -..+||||+.+.
T Consensus 60 ~~Igvv~~~--~~~~f~~~l~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 124 (329)
T TIGR01481 60 TTVGVIIPD--ISNIYYAELARGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGG 124 (329)
T ss_pred CEEEEEeCC--CCchhHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 467777632 2344555555556667888999988876544332211 11 136999999754
No 280
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=39.55 E-value=78 Score=33.34 Aligned_cols=62 Identities=11% Similarity=0.125 Sum_probs=32.8
Q ss_pred CCCCCcEEEEEccCcCCcccccccchhHHHHHHHHC--CCEEEEEcCCC-C---hhhhhhh---cCC--CCEEEEC-CCC
Q 014368 6 LSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY--GAVPAIVPRVS-G---VHMLLDS---FEP--IHGVLLC-EGE 73 (426)
Q Consensus 6 ~~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~--Ga~~vivp~~~-~---~~~l~~~---le~--~DGVILs-GG~ 73 (426)
++....+|||++..+.- .-.-+++.+... ++.+.+.|... + ..+|... ++. +|-|||. ||+
T Consensus 131 lP~~p~~I~viTs~~gA-------a~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGG 203 (438)
T PRK00286 131 LPFFPKRIGVITSPTGA-------AIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGG 203 (438)
T ss_pred CCCCCCEEEEEeCCccH-------HHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 34456789999987531 112233444443 46777777532 1 2222222 222 6889998 554
Q ss_pred C
Q 014368 74 D 74 (426)
Q Consensus 74 d 74 (426)
+
T Consensus 204 S 204 (438)
T PRK00286 204 S 204 (438)
T ss_pred C
Confidence 3
No 281
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.30 E-value=33 Score=33.94 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=15.8
Q ss_pred HHHHHHHHHcCCCEEEEehHH
Q 014368 114 LRLAKLCLERNIPYLGICRGS 134 (426)
Q Consensus 114 ~~lir~ale~~iPILGIClG~ 134 (426)
+..++.+...++|||||=.|.
T Consensus 47 L~a~~~~~~~~iPilGIN~G~ 67 (259)
T PRK00561 47 VSTAANYNCAGCKVVGINTGH 67 (259)
T ss_pred HHHHHHhcCCCCcEEEEecCC
Confidence 455566556789999999884
No 282
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=37.96 E-value=80 Score=32.31 Aligned_cols=82 Identities=22% Similarity=0.364 Sum_probs=50.2
Q ss_pred HHHHHHHCCCEEEEEcCCCC-hhhhhhhcCCCCEEEECC--CCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhh
Q 014368 34 HLDLIVGYGAVPAIVPRVSG-VHMLLDSFEPIHGVLLCE--GEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKD 110 (426)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~-~~~l~~~le~~DGVILsG--G~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd 110 (426)
-++||++.--.|+++.-... ++.....=..++|||+++ |--+|- . + ..++
T Consensus 214 Di~wLr~~T~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgRQlD~---v--p-----AtI~----------------- 266 (363)
T KOG0538|consen 214 DIKWLRSITKLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGRQLDY---V--P-----ATIE----------------- 266 (363)
T ss_pred hhHHHHhcCcCCeEEEeecccHHHHHHHHhCCceEEEeCCCccccCc---c--c-----chHH-----------------
Confidence 46788888888888875433 333332223799999995 433331 1 1 0111
Q ss_pred HHHHHHHHHHHHcCCCEE---EEehHHHHH-HHHhCCc
Q 014368 111 SIELRLAKLCLERNIPYL---GICRGSQVL-NVACGGT 144 (426)
Q Consensus 111 ~~e~~lir~ale~~iPIL---GIClG~QlL-ava~GG~ 144 (426)
.+.-+-.|.+.++||| ||=.|--++ +.|+|++
T Consensus 267 --~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk 302 (363)
T KOG0538|consen 267 --ALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAK 302 (363)
T ss_pred --HHHHHHHHhcCceEEEEecCcccchHHHHHHhcccc
Confidence 1222334566789999 899998877 5677876
No 283
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.58 E-value=2.1e+02 Score=26.85 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=35.7
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----e~~DGVILsGG 72 (426)
|||+... ..+.+...+-....+++.+.|..+.+.....+.+...+.+ ..+||||+.+-
T Consensus 2 Ig~i~~~--~~~~~~~~~~~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (269)
T cd06293 2 IGLVVPD--IANPFFAELADAVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTN 64 (269)
T ss_pred EEEEeCC--CCCCcHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 5666532 1245555566677788999999988775443332211111 36999999864
No 284
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.50 E-value=1.5e+02 Score=27.97 Aligned_cols=58 Identities=3% Similarity=-0.150 Sum_probs=31.7
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHC-----CCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGY-----GAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~-----Ga~~vivp~~~~~~~----l~~~l-e~~DGVILsGG 72 (426)
||++... ..+.|...+....-+...+. |..+++.....+.+. +.... ..+||||+.+.
T Consensus 2 Ig~i~~~--~~~~f~~~~~~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~ 69 (274)
T cd06311 2 IGVSIPA--ADHGWTAGIVWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPF 69 (274)
T ss_pred eeeeccC--CCCcHHHHHHHHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5555432 23555555555555666665 566666654433322 22233 36999999864
No 285
>TIGR03432 yjhG_yagF probable dehydratase, YjhG/YagF family. This homolog of dihydroxy-acid dehydratases has an odd, sparse distribution. Members are found in two Acidobacteria, two Planctomycetes, Bacillus clausii KSM-K16, and (in two copies each) in strains K12-MG1655 and W3110 of Escherichia coli. The local context is not well conserved, but a few members are adjacent to homologs of the gluconate:H+ symporter (see TIGR00791).
Probab=37.38 E-value=80 Score=35.23 Aligned_cols=49 Identities=18% Similarity=0.032 Sum_probs=33.2
Q ss_pred CCCCCCCCCcEEEEEccCcC--------------CcccccccchhHHHHHHHHCCCEEEEEcC
Q 014368 2 AAHDLSVILPRVLIVSRRSV--------------RKNKFVDFVGEYHLDLIVGYGAVPAIVPR 50 (426)
Q Consensus 2 ~~~~~~~~~P~igI~~~~~~--------------~~~~~~~~v~~~yl~~l~~~Ga~~vivp~ 50 (426)
|.+|-...+|.|+|++.++. ..+....-+.+..-+.+.++|+.|+.++.
T Consensus 47 G~~d~dl~kP~I~I~ns~~~~~~~~~~~~~l~~~pgh~hl~~l~~~vk~gi~~aGg~P~ef~t 109 (640)
T TIGR03432 47 GWDPARLLGKEFLILSTHGGLRAADGTPIALGYHTGHWEVGLLMKAAAEEIKRDGAVPFAGFV 109 (640)
T ss_pred CCCHHHhCCCEEEEEeCCcccccccccccccCcCCCcccHHHHHHHHHHHHHHcCceeEEeCC
Confidence 33333346899999998762 33333455556666778899999997764
No 286
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=36.78 E-value=1.5e+02 Score=29.11 Aligned_cols=59 Identities=14% Similarity=0.078 Sum_probs=37.4
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEEC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLC 70 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILs 70 (426)
+|+|+....+......-.-+...+++|.+.|..++++..+.+.-.....+..+|.|+..
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~ 60 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNV 60 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEe
Confidence 57888766565555433455667889999999999887543321212223468977654
No 287
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.40 E-value=1.4e+02 Score=28.04 Aligned_cols=56 Identities=13% Similarity=-0.162 Sum_probs=32.6
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHH-CCCEEEEEcCCCChhhhhhhc-CCCCEEEECC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVG-YGAVPAIVPRVSGVHMLLDSF-EPIHGVLLCE 71 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~-~Ga~~vivp~~~~~~~l~~~l-e~~DGVILsG 71 (426)
+||++... .+.+...+-....+++.+ .|..+++...+ ..+.+.... ..+||+|+.+
T Consensus 1 ~ig~i~~~---~~~~~~~~~~gi~~~~~~~~g~~~~~~~~~-~~~~~~~l~~~~vdGiI~~~ 58 (265)
T cd01543 1 RVALLVET---SSSYGRGVLRGIARYAREHGPWSIYLEPRG-LQEPLRWLKDWQGDGIIARI 58 (265)
T ss_pred CeEEEecc---cchhhHHHHHHHHHHHHhcCCeEEEEeccc-chhhhhhccccccceEEEEC
Confidence 46776642 255666666777788888 56666554432 112221111 2689999974
No 288
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=36.38 E-value=91 Score=37.18 Aligned_cols=63 Identities=17% Similarity=0.057 Sum_probs=41.8
Q ss_pred CCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC---ChhhhhhhcCC-----CCEEEECCC
Q 014368 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS---GVHMLLDSFEP-----IHGVLLCEG 72 (426)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~---~~~~l~~~le~-----~DGVILsGG 72 (426)
.+|+|||+.-++.....-..+ -...++.|++.|+.|+.+-... ..+.+.+.|.. +|+||-+-+
T Consensus 70 ~~P~VgIlfyrs~~~~g~~~~-vdaLI~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~~g~~~vDaIIn~~~ 140 (1098)
T PF02514_consen 70 NRPTVGILFYRSYWLSGNTAV-VDALIRALEERGLNVIPVFCSSGPDSQEAIEDYFMDDGKPRVDAIINLTG 140 (1098)
T ss_pred CCCEEEEEeehhhhhcCCcHH-HHHHHHHHHHCCCeEEEEEecCccchHHHHHHHHhhcCCCCceEEEEcCc
Confidence 579999998665322221223 3456899999999998777432 33456666654 898887755
No 289
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=36.16 E-value=78 Score=31.72 Aligned_cols=61 Identities=8% Similarity=0.131 Sum_probs=32.3
Q ss_pred CCCCCcEEEEEccCcCCcccccccchhHHHHHHHHCC--CEEEEEcCCC----Chhhhhhh---c------CCCCEEEEC
Q 014368 6 LSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYG--AVPAIVPRVS----GVHMLLDS---F------EPIHGVLLC 70 (426)
Q Consensus 6 ~~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~G--a~~vivp~~~----~~~~l~~~---l------e~~DGVILs 70 (426)
++....+|||++..+.- .-.-+++.+..++ +.+++.|... .+.+|... + ..+|.|||.
T Consensus 10 lP~~p~~I~vITs~~gA-------a~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~ 82 (319)
T PF02601_consen 10 LPKFPKRIAVITSPTGA-------AIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIII 82 (319)
T ss_pred CCCCCCEEEEEeCCchH-------HHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEe
Confidence 34555689999987531 1122344455443 5556666532 12222211 1 258999998
Q ss_pred -CCC
Q 014368 71 -EGE 73 (426)
Q Consensus 71 -GG~ 73 (426)
||+
T Consensus 83 RGGG 86 (319)
T PF02601_consen 83 RGGG 86 (319)
T ss_pred cCCC
Confidence 554
No 290
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=36.11 E-value=1.8e+02 Score=27.11 Aligned_cols=40 Identities=10% Similarity=0.050 Sum_probs=30.1
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCC
Q 014368 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGE 73 (426)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~ 73 (426)
.-.+.+...|+.++...++ +.+.+...|..+|.||++-++
T Consensus 35 ~~~~~l~~~g~~vv~~d~~-~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 35 DRAQQLQALGAEVVEADYD-DPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp HHHHHHHHTTTEEEES-TT--HHHHHHHHTTCSEEEEESSC
T ss_pred hhhhhhhcccceEeecccC-CHHHHHHHHcCCceEEeecCc
Confidence 3466688899988755543 678888899999999998774
No 291
>PRK00549 competence damage-inducible protein A; Provisional
Probab=36.03 E-value=1.1e+02 Score=32.21 Aligned_cols=63 Identities=11% Similarity=0.042 Sum_probs=35.7
Q ss_pred EEEEEccCc-CCcccccccchhHHHHHHHHCCCEEEEEcCC-CChhh----hhhhcCCCCEEEECCCCC
Q 014368 12 RVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHM----LLDSFEPIHGVLLCEGED 74 (426)
Q Consensus 12 ~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~----l~~~le~~DGVILsGG~d 74 (426)
+++|++-.+ .-..+..+.-..+..+++...|..+.-+... .+.+. +...++.+|-||++||-+
T Consensus 2 ~~~ii~~G~Ell~G~i~DtN~~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGlG 70 (414)
T PRK00549 2 KAEIIAVGTELLLGQIVNTNAQFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGLG 70 (414)
T ss_pred EEEEEEecccccCCceeEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCCC
Confidence 455554332 3334444443344456788999877643322 23333 334456789999999854
No 292
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=35.64 E-value=59 Score=33.85 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=15.4
Q ss_pred HHHHHHHHHcCCCEEEEe
Q 014368 114 LRLAKLCLERNIPYLGIC 131 (426)
Q Consensus 114 ~~lir~ale~~iPILGIC 131 (426)
..+.+.|.+.++|+++||
T Consensus 306 igVA~~Akk~~vPvIaia 323 (378)
T COG1929 306 IGVAKLAKKYGVPVIAIA 323 (378)
T ss_pred hHHHHhhhhhCCCEEEEe
Confidence 457788888899999999
No 293
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=35.58 E-value=1.5e+02 Score=27.26 Aligned_cols=62 Identities=23% Similarity=0.277 Sum_probs=43.5
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhh---hhhc--CCCCEEEECCCC-CCCCCcccccCCCCChhHHHHHHhhcCCCccc
Q 014368 32 EYHLDLIVGYGAVPAIVPRVSGVHML---LDSF--EPIHGVLLCEGE-DIDPSLYEAETSNLSPEELEEIRRLHTSDTAI 105 (426)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~~~~l---~~~l--e~~DGVILsGG~-didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~ 105 (426)
..+.+++...|..|++..-+.|..-. .+.+ ..+|+++|..|- |+
T Consensus 69 ~~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~DF------------------------------ 118 (160)
T TIGR00288 69 DKLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVALVTRDADF------------------------------ 118 (160)
T ss_pred HHHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEEEEEeccHhH------------------------------
Confidence 34567888999999887765554322 3333 678999888772 21
Q ss_pred cchhhHHHHHHHHHHHHcCCCEEEEe
Q 014368 106 DKEKDSIELRLAKLCLERNIPYLGIC 131 (426)
Q Consensus 106 d~~rd~~e~~lir~ale~~iPILGIC 131 (426)
..|+.++.+.|+-|.|+-
T Consensus 119 --------~~Lv~~lre~G~~V~v~g 136 (160)
T TIGR00288 119 --------LPVINKAKENGKETIVIG 136 (160)
T ss_pred --------HHHHHHHHHCCCEEEEEe
Confidence 347888888999999975
No 294
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.43 E-value=1.4e+02 Score=28.63 Aligned_cols=48 Identities=21% Similarity=0.161 Sum_probs=32.8
Q ss_pred cccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 014368 23 KNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (426)
Q Consensus 23 ~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG 72 (426)
.+.+..-+-....+.+.+.|..+++.......+.+. -..+||||+.+.
T Consensus 18 ~~~~~~~~~~~i~~~~~~~gy~~~~~~~~~~~~~l~--~~~vdgiIi~~~ 65 (269)
T cd06287 18 RLGFMMEVAAAAAESALERGLALCLVPPHEADSPLD--ALDIDGAILVEP 65 (269)
T ss_pred cCccHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhh--ccCcCeEEEecC
Confidence 345555566667788999999999987653323332 247999999764
No 295
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=35.27 E-value=1.4e+02 Score=25.85 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=44.1
Q ss_pred hhHHHHHHHHCCCEEEEEcCC--------CChhhhhhh---c--CCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHh
Q 014368 31 GEYHLDLIVGYGAVPAIVPRV--------SGVHMLLDS---F--EPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRR 97 (426)
Q Consensus 31 ~~~yl~~l~~~Ga~~vivp~~--------~~~~~l~~~---l--e~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~ 97 (426)
...+.+++...|..++..+.. .|..-..+. + ..+|.++|..| |-+
T Consensus 54 ~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSg---D~D------------------- 111 (149)
T cd06167 54 QRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSG---DSD------------------- 111 (149)
T ss_pred HHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEEC---Ccc-------------------
Confidence 355788999999999988842 232222121 1 25888888777 211
Q ss_pred hcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehH
Q 014368 98 LHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRG 133 (426)
Q Consensus 98 ~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG 133 (426)
-..+++.+.+.|+.|..+|..
T Consensus 112 ---------------f~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 112 ---------------FVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred ---------------HHHHHHHHHHcCCEEEEEccC
Confidence 134777888889999999976
No 296
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=35.26 E-value=1.6e+02 Score=29.77 Aligned_cols=59 Identities=10% Similarity=0.115 Sum_probs=35.8
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEE-EcCCCChh----hhhhhc-CCCCEEEECC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAI-VPRVSGVH----MLLDSF-EPIHGVLLCE 71 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vi-vp~~~~~~----~l~~~l-e~~DGVILsG 71 (426)
.+|+++... ..+.|+.-+....-++..+.|..+++ .|...+.+ .+.... ..+|||++++
T Consensus 24 ~~i~~v~k~--~~~pf~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~ 88 (336)
T PRK15408 24 ERIAFIPKL--VGVGFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSA 88 (336)
T ss_pred cEEEEEECC--CCCHHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 356666532 23556666667777888899988876 34333322 122222 4799999974
No 297
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.22 E-value=77 Score=29.61 Aligned_cols=59 Identities=10% Similarity=0.050 Sum_probs=35.8
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhh----hc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLD----SF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~----~l-e~~DGVILsGG 72 (426)
||++.... ..+.|...+-....+++.+.|..+++.+...+.+...+ .. ..+||||+.+.
T Consensus 2 ig~v~~~~-~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 65 (269)
T cd06288 2 IGLISDEI-ATTPFAVEIILGAQDAAREHGYLLLVVNTGGDDELEAEAVEALLDHRVDGIIYATM 65 (269)
T ss_pred eEEEeCCC-CCCccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 56665331 12445555556667778889999888776544322111 11 26899999864
No 298
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=35.09 E-value=76 Score=31.21 Aligned_cols=41 Identities=7% Similarity=-0.133 Sum_probs=27.9
Q ss_pred hHHHHHHHHCCCEEEEEcCC----CC---hhhhhhhcCCCCEEEECCC
Q 014368 32 EYHLDLIVGYGAVPAIVPRV----SG---VHMLLDSFEPIHGVLLCEG 72 (426)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~----~~---~~~l~~~le~~DGVILsGG 72 (426)
+...+.|++.|+.++.+|.- .+ .+.....+..+|.|||+-.
T Consensus 31 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~ 78 (266)
T PRK08811 31 APLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSP 78 (266)
T ss_pred HHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECH
Confidence 44567799999999988862 11 1122234568999999865
No 299
>PRK11914 diacylglycerol kinase; Reviewed
Probab=35.01 E-value=1.7e+02 Score=28.90 Aligned_cols=61 Identities=8% Similarity=0.077 Sum_probs=35.0
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC--Chhhhhh-h-cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS--GVHMLLD-S-FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~--~~~~l~~-~-le~~DGVILsGG 72 (426)
.+++|+-|+.+-..+....+ +..++.+.+.|..+.++.... +...+.+ . .+.+|.||+.||
T Consensus 9 ~~~~iI~NP~sG~g~~~~~~-~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GG 73 (306)
T PRK11914 9 GKVTVLTNPLSGHGAAPHAA-ERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGG 73 (306)
T ss_pred ceEEEEECCCCCCCcHHHHH-HHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECC
Confidence 56788888766443322222 233567888998766544322 2222221 1 246799999999
No 300
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=34.66 E-value=8.9 Score=27.12 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=11.2
Q ss_pred CEEEEehHHHHHHHHhC
Q 014368 126 PYLGICRGSQVLNVACG 142 (426)
Q Consensus 126 PILGIClG~QlLava~G 142 (426)
-.-|.|+|.|+|..+-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T PF09075_consen 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SS--TTTTTHHHHTTT-
T ss_pred Cccccccchhhhhhccc
Confidence 35688999999976544
No 301
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=34.05 E-value=1.4e+02 Score=26.84 Aligned_cols=59 Identities=12% Similarity=-0.050 Sum_probs=31.8
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHH--CCCEEEEEcCCCChh----hhhhhc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVG--YGAVPAIVPRVSGVH----MLLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~--~Ga~~vivp~~~~~~----~l~~~l-e~~DGVILsGG 72 (426)
||++..... .+.+..-+.....+++.+ .|..++++....+.+ .+.... +.+||||+++.
T Consensus 2 Ig~i~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~ 67 (269)
T cd01391 2 IGVLLPLSG-SAPFGAQLLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPS 67 (269)
T ss_pred ceEEeecCC-CcHHHHHHHHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 555543321 223333344455566777 777777776544421 111222 26999999876
No 302
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=33.53 E-value=1e+02 Score=27.97 Aligned_cols=59 Identities=12% Similarity=0.046 Sum_probs=40.6
Q ss_pred CCCcEEEEEccCcCCcccccccchhH-HHHHHHHCCCEEEEEcCCCChhhhhhhc--CCCCEEEECC
Q 014368 8 VILPRVLIVSRRSVRKNKFVDFVGEY-HLDLIVGYGAVPAIVPRVSGVHMLLDSF--EPIHGVLLCE 71 (426)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~-yl~~l~~~Ga~~vivp~~~~~~~l~~~l--e~~DGVILsG 71 (426)
..+|+|+|...- ...+. .+.. ..+++...|..++..+...+++++.... +.+|.|.+|+
T Consensus 10 g~rprvlvak~G-lDgHd----~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSs 71 (143)
T COG2185 10 GARPRVLVAKLG-LDGHD----RGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSS 71 (143)
T ss_pred CCCceEEEeccC-ccccc----cchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEe
Confidence 358999998755 22221 1122 2456889999999888777777665544 6799999996
No 303
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=33.47 E-value=1.7e+02 Score=27.24 Aligned_cols=57 Identities=12% Similarity=0.025 Sum_probs=33.0
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc--CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF--EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l--e~~DGVILsGG 72 (426)
|||+... . .+.|..-+-....+.+.+.|..+++.... +.....+.+ ..+||||+.+.
T Consensus 2 igvv~~~-~-~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~l~~~~vdgii~~~~ 60 (261)
T cd06272 2 IGLIWPS-V-SRVALTELVTGINQAISKNGYNMNVSITP-SLAEAEDLFKENRFDGVIIFGE 60 (261)
T ss_pred EEEEecC-C-CchhHHHHHHHHHHHHHHcCCEEEEEecc-cHHHHHHHHHHcCcCEEEEeCC
Confidence 5666532 1 24444444555667788899888877543 222222222 26999999864
No 304
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=33.08 E-value=1.3e+02 Score=28.07 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=34.4
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC-----------------------ChhhhhhhcCCCCEEE
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-----------------------GVHMLLDSFEPIHGVL 68 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-----------------------~~~~l~~~le~~DGVI 68 (426)
+++|...+.. +.-+..+.+..++-+++.|+++.++.... +.+++.+.+..+||||
T Consensus 3 i~~I~gs~r~--~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI 80 (207)
T COG0655 3 ILGINGSPRS--NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGII 80 (207)
T ss_pred eeEEEecCCC--CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEE
Confidence 4455544433 22344556677888998999887665321 1234444456689999
Q ss_pred EC
Q 014368 69 LC 70 (426)
Q Consensus 69 Ls 70 (426)
|.
T Consensus 81 ~g 82 (207)
T COG0655 81 FG 82 (207)
T ss_pred Ee
Confidence 86
No 305
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=32.87 E-value=1.1e+02 Score=27.50 Aligned_cols=92 Identities=18% Similarity=0.197 Sum_probs=50.6
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCE-----EEEEcCCCCh----hhhhhhcCCCCEEEECCCC--CCCCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAV-----PAIVPRVSGV----HMLLDSFEPIHGVLLCEGE--DIDPS 78 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~-----~vivp~~~~~----~~l~~~le~~DGVILsGG~--didp~ 78 (426)
..+|+|+..+ +....++-+-+.-++.+.+.|+. ++.||-..+. ..+.+. ..+||||-.|-- + +-.
T Consensus 7 ~~ri~IV~s~--fn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~s-~~~DavIaLG~VIrG-eT~ 82 (141)
T PLN02404 7 GLRFGVVVAR--FNEIITKNLLEGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAKS-GKYDAILCIGAVIRG-DTT 82 (141)
T ss_pred CCEEEEEEec--CcHHHHHHHHHHHHHHHHHcCCCccceEEEEcCcHHHHHHHHHHHHhc-CCCCEEEEEEEEEeC-CCc
Confidence 3688888644 22234555556667889999963 3345532211 222222 369999888731 0 112
Q ss_pred cccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEE-EE
Q 014368 79 LYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYL-GI 130 (426)
Q Consensus 79 ~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPIL-GI 130 (426)
+|+ ..-+.....+.+-.++.++||. ||
T Consensus 83 H~e-------------------------~V~~~v~~gl~~vsl~~~~PV~~GV 110 (141)
T PLN02404 83 HYD-------------------------AVANSAASGVLSAGLNSGVPCIFGV 110 (141)
T ss_pred hhH-------------------------HHHHHHHHHHHHHHhccCCCEEEEE
Confidence 221 1122334567777888899975 65
No 306
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=32.66 E-value=1.3e+02 Score=29.80 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=15.4
Q ss_pred HHHHHHHHcCCCEEEEe
Q 014368 115 RLAKLCLERNIPYLGIC 131 (426)
Q Consensus 115 ~lir~ale~~iPILGIC 131 (426)
..+++|...+||+.|+|
T Consensus 132 qAI~EA~~lnIPvIal~ 148 (249)
T PTZ00254 132 QAIREASYVNIPVIALC 148 (249)
T ss_pred HHHHHHHHhCCCEEEEe
Confidence 57888888999999999
No 307
>PRK09701 D-allose transporter subunit; Provisional
Probab=32.54 E-value=2.3e+02 Score=27.75 Aligned_cols=60 Identities=13% Similarity=0.059 Sum_probs=36.3
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEc--CCCChh----hhhhhc-CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVP--RVSGVH----MLLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp--~~~~~~----~l~~~l-e~~DGVILsGG 72 (426)
-.|||+... ..+.|...+....-+.+.+.|..+.++. ...+.+ .+...+ ..+|||||.+.
T Consensus 25 ~~Igvi~~~--~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 91 (311)
T PRK09701 25 AEYAVVLKT--LSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 91 (311)
T ss_pred CeEEEEeCC--CCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 467877643 2355555555666677888998888763 222221 122222 36999999875
No 308
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=31.27 E-value=1.4e+02 Score=25.43 Aligned_cols=58 Identities=10% Similarity=0.092 Sum_probs=35.6
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC--Chhhhh--hhcCCC-CEEEECCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS--GVHMLL--DSFEPI-HGVLLCEG 72 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~--~~~~l~--~~le~~-DGVILsGG 72 (426)
+++|+-++.+..++.. + ....+.+...+....++.... ....+. ...+.. |.||+.||
T Consensus 1 k~~vi~Np~sG~~~~~--~-~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GG 63 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--W-KKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVGG 63 (130)
T ss_dssp SEEEEEETTSTTSHHH--H-HHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEES
T ss_pred CEEEEECCCCCCCchh--H-HHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEcC
Confidence 3567777766554433 2 566778888887766555432 223332 234555 89999999
No 309
>PRK06852 aldolase; Validated
Probab=31.24 E-value=2.1e+02 Score=29.15 Aligned_cols=41 Identities=12% Similarity=0.074 Sum_probs=29.7
Q ss_pred HHHHHHHCCCEEEEEcCC-----CChhhhhhhcCCC--CEEEECCCCC
Q 014368 34 HLDLIVGYGAVPAIVPRV-----SGVHMLLDSFEPI--HGVLLCEGED 74 (426)
Q Consensus 34 yl~~l~~~Ga~~vivp~~-----~~~~~l~~~le~~--DGVILsGG~d 74 (426)
-++.-...||..|-+++. .+.+.+.+..+.+ =.||+.||+.
T Consensus 193 aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~k 240 (304)
T PRK06852 193 AAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCAGGSS 240 (304)
T ss_pred HHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCCC
Confidence 356677899999999987 5555666555544 4589999975
No 310
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=31.20 E-value=1.9e+02 Score=30.40 Aligned_cols=86 Identities=12% Similarity=0.207 Sum_probs=49.6
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhc-CCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhH
Q 014368 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSF-EPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (426)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-e~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~ 111 (426)
..+++|++.--.|+++.-..+.++..... ..+|||+++|.++-.. +..+. . .
T Consensus 243 ~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~---d~~~~---------------------t---~ 295 (383)
T cd03332 243 EDLAFLREWTDLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQV---DGSIA---------------------A---L 295 (383)
T ss_pred HHHHHHHHhcCCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcCC---CCCcC---------------------H---H
Confidence 46788887644678777555555443332 3799999997442110 00110 0 0
Q ss_pred HHHHHHHHHHHcCCCEE---EEehHHHHHH-HHhCCcc
Q 014368 112 IELRLAKLCLERNIPYL---GICRGSQVLN-VACGGTL 145 (426)
Q Consensus 112 ~e~~lir~ale~~iPIL---GIClG~QlLa-va~GG~l 145 (426)
..+.-++.+...++||+ ||-.|..++- .++|+..
T Consensus 296 ~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~ 333 (383)
T cd03332 296 DALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKA 333 (383)
T ss_pred HHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCE
Confidence 11223334444569999 8889998874 4677763
No 311
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=30.68 E-value=1.8e+02 Score=28.02 Aligned_cols=49 Identities=10% Similarity=0.116 Sum_probs=27.6
Q ss_pred ccccccchhHHHHHHHHCCCE-EEEE-cCCCChhh----hhhh-cCCCCEEEECCC
Q 014368 24 NKFVDFVGEYHLDLIVGYGAV-PAIV-PRVSGVHM----LLDS-FEPIHGVLLCEG 72 (426)
Q Consensus 24 ~~~~~~v~~~yl~~l~~~Ga~-~viv-p~~~~~~~----l~~~-le~~DGVILsGG 72 (426)
+.|...+-...-+.+.+.|.. +++. +...+.+. +... -..+||||+.+.
T Consensus 10 ~~f~~~~~~gi~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~l~~~~vdgiIi~~~ 65 (302)
T TIGR02637 10 NPFFEAANKGAEEAAKELGSVYIIYTGPTGTTAEGQIEVVNSLIAQKVDAIAISAN 65 (302)
T ss_pred CHHHHHHHHHHHHHHHHhCCeeEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 455555666667788889944 4433 33223321 1111 147999999753
No 312
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=30.36 E-value=1.7e+02 Score=30.63 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=50.2
Q ss_pred HHHHHHHCCCEEEEEcCCCChhhhhhhcC-CCCEEEECCCCC--CCCCcccccCCCCChhHHHHHHhhcCCCccccchhh
Q 014368 34 HLDLIVGYGAVPAIVPRVSGVHMLLDSFE-PIHGVLLCEGED--IDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKD 110 (426)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~le-~~DGVILsGG~d--idp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd 110 (426)
.++||++.--.|+++.-..+.++.....+ .+|||+++|.++ .+. .+. +
T Consensus 236 di~~lr~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~-----~~~--t---------------------- 286 (381)
T PRK11197 236 DLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDG-----VLS--S---------------------- 286 (381)
T ss_pred HHHHHHHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCC-----ccc--H----------------------
Confidence 48889887777888887666655444333 699999997432 211 110 0
Q ss_pred HHHHHHHHHHHHcCCCEE---EEehHHHHH-HHHhCCc
Q 014368 111 SIELRLAKLCLERNIPYL---GICRGSQVL-NVACGGT 144 (426)
Q Consensus 111 ~~e~~lir~ale~~iPIL---GIClG~QlL-ava~GG~ 144 (426)
...+..+..+...++||+ ||-.|..++ +.++|++
T Consensus 287 ~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~ 324 (381)
T PRK11197 287 ARALPAIADAVKGDITILADSGIRNGLDVVRMIALGAD 324 (381)
T ss_pred HHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcC
Confidence 001122333444579999 898998887 4466765
No 313
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=29.80 E-value=47 Score=29.18 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=30.3
Q ss_pred cccchhHHHHHHHHCCCEEE---EEcCCCChhhhh----hhcCCCCEEEECCCCCCC
Q 014368 27 VDFVGEYHLDLIVGYGAVPA---IVPRVSGVHMLL----DSFEPIHGVLLCEGEDID 76 (426)
Q Consensus 27 ~~~v~~~yl~~l~~~Ga~~v---ivp~~~~~~~l~----~~le~~DGVILsGG~did 76 (426)
.+.-.....+++.+.|+.++ ++| .+.+.+. +.++..|-||.+||-++.
T Consensus 15 ~d~n~~~l~~~l~~~G~~v~~~~~v~--Dd~~~i~~~l~~~~~~~D~VittGG~g~~ 69 (144)
T PF00994_consen 15 RDSNGPFLAALLEELGIEVIRYGIVP--DDPDAIKEALRRALDRADLVITTGGTGPG 69 (144)
T ss_dssp EBHHHHHHHHHHHHTTEEEEEEEEEE--SSHHHHHHHHHHHHHTTSEEEEESSSSSS
T ss_pred EEhHHHHHHHHHHHcCCeeeEEEEEC--CCHHHHHHHHHhhhccCCEEEEcCCcCcc
Confidence 33334445567888999876 444 2444443 334578999999996543
No 314
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.07 E-value=1.6e+02 Score=29.22 Aligned_cols=55 Identities=9% Similarity=0.152 Sum_probs=28.1
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh-h----hhhhhcCCCCEEEECCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-H----MLLDSFEPIHGVLLCEG 72 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-~----~l~~~le~~DGVILsGG 72 (426)
+|||+.++..... .. +....++|+ ..|..+++-...... . .. ... .+|-+|.-||
T Consensus 2 ~i~iv~~~~~~~~--~~-~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~-~~~-~~D~vi~lGG 61 (271)
T PRK01185 2 KVAFVIRKDCKRC--IK-IAKSIIELL-PPDWEIIYEMEAAKALGMDGLDI-EEI-NADVIITIGG 61 (271)
T ss_pred EEEEEecCCCHHH--HH-HHHHHHHHH-hcCCEEEEechhhhhcCcccCcc-ccc-CCCEEEEEcC
Confidence 3888887643211 11 123345667 568777664321100 0 11 111 5798888899
No 315
>PRK09932 glycerate kinase II; Provisional
Probab=28.71 E-value=85 Score=32.94 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCCEEEEe
Q 014368 114 LRLAKLCLERNIPYLGIC 131 (426)
Q Consensus 114 ~~lir~ale~~iPILGIC 131 (426)
..+.+.+.+.++|+..||
T Consensus 306 ~~Va~~A~~~~~Pvi~i~ 323 (381)
T PRK09932 306 LGVASVAKQFNVPVIGIA 323 (381)
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 457788888999999999
No 316
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.59 E-value=1.1e+02 Score=28.69 Aligned_cols=58 Identities=16% Similarity=0.096 Sum_probs=35.2
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhh----h-cCCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLD----S-FEPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~----~-le~~DGVILsGG 72 (426)
|||+... . .+.++..+-+...+.+.+.|..+++.....+.+...+ . -..+||||+.+-
T Consensus 2 Ig~i~p~-~-~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (263)
T cd06280 2 VGLIVAD-I-RNPFFTAVSRAVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPT 64 (263)
T ss_pred EEEEecc-c-ccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 5565432 2 2445455556667788899999988765544332111 1 126999999864
No 317
>PF06223 Phage_tail_T: Minor tail protein T; InterPro: IPR009350 This family represents the minor tail protein T of Lambda-like viruses and their prophage. The minor tail protein T is located at the distal end and is involved in the assembly of the initiator complex for tail polymerisation. The protein is essential for tail assembly but is not found in the mature virion [].
Probab=28.56 E-value=58 Score=27.89 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhcCHHHHHhHHHHHHH
Q 014368 379 RERLARNVIGKMSVEQLSDLMSFYFT 404 (426)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (426)
|+.==|+|++.||..++.|-..||+.
T Consensus 7 ~R~dWR~MLa~MSstE~~eW~~ff~~ 32 (103)
T PF06223_consen 7 GRPDWRRMLAEMSSTEYGEWADFFRK 32 (103)
T ss_pred cCchHHHHHHhcCHHHHHHHHHHHHh
Confidence 33445899999999999999999974
No 318
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=28.13 E-value=81 Score=32.97 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCCEEEEe
Q 014368 114 LRLAKLCLERNIPYLGIC 131 (426)
Q Consensus 114 ~~lir~ale~~iPILGIC 131 (426)
..+.+.+.+.++|+..||
T Consensus 305 ~~Va~~A~~~~vPviai~ 322 (375)
T TIGR00045 305 VGVAKRAKKYGVPVIAIA 322 (375)
T ss_pred HHHHHHHHHhCCeEEEEe
Confidence 467788888999999999
No 319
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=27.98 E-value=2.1e+02 Score=29.43 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=29.1
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcC-CCCEEEECC
Q 014368 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFE-PIHGVLLCE 71 (426)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~le-~~DGVILsG 71 (426)
..++++++..-.|+++.-....++.....+ .+|+|+++|
T Consensus 203 ~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 203 DDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred HHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEEC
Confidence 468889988888988886666555544333 699999997
No 320
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=27.73 E-value=1.3e+02 Score=28.37 Aligned_cols=59 Identities=15% Similarity=0.041 Sum_probs=32.0
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEc----CCCChh----hhhhhcCCCCEEEECCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVP----RVSGVH----MLLDSFEPIHGVLLCEG 72 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp----~~~~~~----~l~~~le~~DGVILsGG 72 (426)
+||++... ..+.|+..+-....+.+...|...+++. ...+.+ .+......+||+|+.+.
T Consensus 1 ~ig~v~~~--~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vdgiii~~~ 67 (275)
T cd06307 1 RLGFLLPK--GSNAFYRELAAALEAAAAAFPDARIRVRIHFVESFDPAALAAALLRLGARSDGVALVAP 67 (275)
T ss_pred CeEEEeCC--CCChHHHHHHHHHHHHHhhhhccCceEEEEEccCCCHHHHHHHHHHHHhcCCEEEEeCC
Confidence 35655432 2355666666777778888876544332 112222 22222227999999754
No 321
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=27.54 E-value=84 Score=27.35 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=36.8
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC------------------ChhhhhhhcCCCCEEEEC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS------------------GVHMLLDSFEPIHGVLLC 70 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~------------------~~~~l~~~le~~DGVILs 70 (426)
+|+|+... .+++.....+.+...+.+.+.|+.+.++.... +.+.+.+.+...||||+.
T Consensus 2 kilii~gS-~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~ 77 (152)
T PF03358_consen 2 KILIINGS-PRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFA 77 (152)
T ss_dssp EEEEEESS-SSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEE
T ss_pred EEEEEECc-CCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEe
Confidence 34555322 23444456677778888988899998775432 123445556779999986
No 322
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=26.69 E-value=1.1e+02 Score=29.42 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=32.2
Q ss_pred HHHHHHHHCCCEEE-EEcCCCChhhhhhhcCCCCEEEECCC
Q 014368 33 YHLDLIVGYGAVPA-IVPRVSGVHMLLDSFEPIHGVLLCEG 72 (426)
Q Consensus 33 ~yl~~l~~~Ga~~v-ivp~~~~~~~l~~~le~~DGVILsGG 72 (426)
..++.+++.|+.+- .+.+.++.+.+...++.+|.|++.+.
T Consensus 97 ~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV 137 (220)
T PRK08883 97 RTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSV 137 (220)
T ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEe
Confidence 46788999998885 45556778888888999999999765
No 323
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=25.73 E-value=2.2e+02 Score=25.96 Aligned_cols=60 Identities=22% Similarity=0.114 Sum_probs=33.8
Q ss_pred CCcEEEEEccCcCCcccccccchhHHHHHHHHCC---CEEEEEcCCCChhhhh----hhc--CCCCEEEECC
Q 014368 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYG---AVPAIVPRVSGVHMLL----DSF--EPIHGVLLCE 71 (426)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~G---a~~vivp~~~~~~~l~----~~l--e~~DGVILsG 71 (426)
..++|+|+..+ +....++-+-+.-++.+.+.| ..+.++. +.+.-+|+ ..+ .++||+|-.|
T Consensus 11 ~~~riaIV~s~--~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~-VPGa~EiP~a~~~l~~~~~~DavIalG 79 (154)
T PRK00061 11 KGLRIGIVVAR--FNDFITDALLEGALDALKRHGVSEENIDVVR-VPGAFEIPLAAKKLAESGKYDAVIALG 79 (154)
T ss_pred CCCEEEEEEec--CcHHHHHHHHHHHHHHHHHcCCCccceEEEE-CCCHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 34789988644 222334555666788899999 3333332 22222221 111 4699999887
No 324
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=25.51 E-value=4.5e+02 Score=25.67 Aligned_cols=112 Identities=19% Similarity=0.189 Sum_probs=59.1
Q ss_pred EEEccCcCCcccccccchhHHHHHHHH----CCCEEEEEcCCCCh---hhhhhhcCCCCEEEECCCCCCCCCcccccCCC
Q 014368 14 LIVSRRSVRKNKFVDFVGEYHLDLIVG----YGAVPAIVPRVSGV---HMLLDSFEPIHGVLLCEGEDIDPSLYEAETSN 86 (426)
Q Consensus 14 gI~~~~~~~~~~~~~~v~~~yl~~l~~----~Ga~~vivp~~~~~---~~l~~~le~~DGVILsGG~didp~~y~~~~~~ 86 (426)
.|++.|+...+.....-.+.|++.+.+ .|+.-+-+-..... ..+.+...+.+ ||+|-- + +...+
T Consensus 60 ~IfT~R~~~EGG~~~~~~~~~i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~-vI~SyH-~-----F~~TP-- 130 (231)
T COG0710 60 LIFTFRTVKEGGEFPGSEEEYIELLKKLAELNGPDYIDIELSSPEDDVKEIIKFAKKHG-VIVSYH-D-----FEKTP-- 130 (231)
T ss_pred eEEEEeehhhcCCCCCCHHHHHHHHHHHHhhcCCCEEEEEccCcchhHHHHHhccccCC-EEEEec-c-----CCCCC--
Confidence 456666544444445556667776654 34555555554432 23333333333 777643 1 22222
Q ss_pred CChhHH-HHHHhhcCCCccc-----cchhhHHHHHHHHHHHH---cCCCEEEEehHHH
Q 014368 87 LSPEEL-EEIRRLHTSDTAI-----DKEKDSIELRLAKLCLE---RNIPYLGICRGSQ 135 (426)
Q Consensus 87 ~~~e~~-~~ir~~h~~~~~~-----d~~rd~~e~~lir~ale---~~iPILGIClG~Q 135 (426)
+.|++ +|+.++......+ -+....-.+.+++...+ .++|+.+||.|=-
T Consensus 131 -~~~~i~~~l~km~~~~aDivKiAvm~~~~~DvL~ll~~~~~~~~~~~p~i~i~MG~~ 187 (231)
T COG0710 131 -PLEEIIERLDKMESLGADIVKIAVMPQSKEDVLDLLEATREFKEAEKPVITISMGKT 187 (231)
T ss_pred -cHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHHHHHHHHhccccCCCEEEEecCCC
Confidence 22444 5666655444211 12233334566766665 6999999999854
No 325
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=25.15 E-value=79 Score=28.46 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=29.8
Q ss_pred CCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC---Chhhhhhhc
Q 014368 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS---GVHMLLDSF 61 (426)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~---~~~~l~~~l 61 (426)
.+|+|||++--+.....-+. .--+||+.+|+.++..-... +.+++.+.|
T Consensus 90 ~k~vIgvVTK~DLaed~dI~----~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 90 VKKVIGVVTKADLAEDADIS----LVKRWLREAGAEPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred ccceEEEEecccccchHhHH----HHHHHHHHcCCcceEEEeccCcccHHHHHHHH
Confidence 46899999977654222122 23468999999998665432 344444443
No 326
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.14 E-value=78 Score=31.38 Aligned_cols=43 Identities=19% Similarity=0.157 Sum_probs=25.6
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG 72 (426)
.|+|+.+. .. + ..-+.....+++...|..+ . . +.+|-+|.-||
T Consensus 2 ~i~Ii~~~-~~--~-~~~~~~~l~~~l~~~g~~~---~----~-------~~~Dlvi~iGG 44 (265)
T PRK04885 2 KVAIISNG-DP--K-SKRVASKLKKYLKDFGFIL---D----E-------KNPDIVISVGG 44 (265)
T ss_pred EEEEEeCC-CH--H-HHHHHHHHHHHHHHcCCcc---C----C-------cCCCEEEEECC
Confidence 37888763 21 1 1223444566788888661 1 0 35799999999
No 327
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.05 E-value=1.5e+02 Score=27.76 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=35.5
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhh----hhhc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHML----LDSF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l----~~~l-e~~DGVILsGG 72 (426)
|||+... ..+.+...+-....+.+...|..+++.....+.+.. .... ..+||||+.+.
T Consensus 2 i~vi~~~--~~~~~~~~~~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06290 2 IGVLTQD--FASPFYGRILKGMERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALILLGG 64 (265)
T ss_pred EEEEECC--CCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 5555432 224555555566667888999999887765444321 1122 25999999865
No 328
>PRK08227 autoinducer 2 aldolase; Validated
Probab=24.18 E-value=2.9e+02 Score=27.50 Aligned_cols=61 Identities=8% Similarity=0.022 Sum_probs=35.8
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCC-CCEEEECCCCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEP-IHGVLLCEGED 74 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~-~DGVILsGG~d 74 (426)
+|++.+..+.....+. .++ -.+-.+.-.+.||..|-++|.. +...+..+. .--||+.||+.
T Consensus 141 ~Plla~~prG~~~~~~-~~~-ia~aaRiaaELGADiVK~~y~~--~~f~~vv~a~~vPVviaGG~k 202 (264)
T PRK08227 141 MPVMAVTAVGKDMVRD-ARY-FSLATRIAAEMGAQIIKTYYVE--EGFERITAGCPVPIVIAGGKK 202 (264)
T ss_pred CcEEEEecCCCCcCch-HHH-HHHHHHHHHHHcCCEEecCCCH--HHHHHHHHcCCCcEEEeCCCC
Confidence 5888865443322221 122 2334566778999999999864 333333332 34689999974
No 329
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=24.06 E-value=1.3e+02 Score=28.34 Aligned_cols=60 Identities=12% Similarity=-0.130 Sum_probs=34.5
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhh----hc-CCCCEEEECCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLD----SF-EPIHGVLLCEG 72 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~----~l-e~~DGVILsGG 72 (426)
+|+|+-......+.|...+-...-+.+.+.|..+++.... +.+...+ .. ..+||||+.+.
T Consensus 1 ~Igvi~~~~~~~~~f~~~l~~gi~~~~~~~gy~~~~~~~~-~~~~~~~~~~~l~~~~vdgiii~~~ 65 (260)
T cd06304 1 KVALVYDGGGGDKSFNQSAYEGLEKAEKELGVEVKYVESV-EDADYEPNLRQLAAQGYDLIFGVGF 65 (260)
T ss_pred CEEEEecCCCCcchHHHHHHHHHHHHHHhcCceEEEEecC-CHHHHHHHHHHHHHcCCCEEEECCc
Confidence 3565553211234555555566667788899988876543 3222111 11 25899999854
No 330
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=23.79 E-value=1.5e+02 Score=27.61 Aligned_cols=58 Identities=10% Similarity=-0.027 Sum_probs=35.2
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhh----hhc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLL----DSF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~----~~l-e~~DGVILsGG 72 (426)
|||+... ..+.++..+-...-+++.+.|..++++....+.+... ... ..+||||+.+.
T Consensus 2 igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (269)
T cd06275 2 IGMLVTT--STNPFFAEVVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCS 64 (269)
T ss_pred EEEEeCC--CCcchHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 5555432 1244555555666777888999988876544443211 111 36999999875
No 331
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=23.77 E-value=1.9e+02 Score=24.61 Aligned_cols=91 Identities=22% Similarity=0.192 Sum_probs=47.1
Q ss_pred hhHHHHHHHHCCCEEEEEcCCCC-------hhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCc
Q 014368 31 GEYHLDLIVGYGAVPAIVPRVSG-------VHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDT 103 (426)
Q Consensus 31 ~~~yl~~l~~~Ga~~vivp~~~~-------~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~ 103 (426)
+...++.+.+.|..++.|....+ ...+.+.=+.+|-+++.-.++.- ++-++++..+.....
T Consensus 16 g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~------------~~~v~~~~~~g~~~v 83 (116)
T PF13380_consen 16 GYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKV------------PEIVDEAAALGVKAV 83 (116)
T ss_dssp HHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHH------------HHHHHHHHHHT-SEE
T ss_pred HHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHH------------HHHHHHHHHcCCCEE
Confidence 44567788889988887765332 12333312467887777653211 223445555443333
Q ss_pred cccchhhHHHHHHHHHHHHcCCCEE-EEehHHH
Q 014368 104 AIDKEKDSIELRLAKLCLERNIPYL-GICRGSQ 135 (426)
Q Consensus 104 ~~d~~rd~~e~~lir~ale~~iPIL-GIClG~Q 135 (426)
.+.+. ..+.++++.|.+.+++++ .=|.|+.
T Consensus 84 ~~~~g--~~~~~~~~~a~~~gi~vigp~C~gv~ 114 (116)
T PF13380_consen 84 WLQPG--AESEELIEAAREAGIRVIGPNCLGVV 114 (116)
T ss_dssp EE-TT--S--HHHHHHHHHTT-EEEESS-HHHH
T ss_pred EEEcc--hHHHHHHHHHHHcCCEEEeCCcceEE
Confidence 22222 334568888888999999 5688874
No 332
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=23.75 E-value=1.8e+02 Score=28.36 Aligned_cols=60 Identities=12% Similarity=0.021 Sum_probs=37.2
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-e~~DGVILsGG 72 (426)
.+||++... ..+.|+..+-....+.+.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 57 ~~Igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 121 (327)
T PRK10423 57 RTIGMLITA--STNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCT 121 (327)
T ss_pred CeEEEEeCC--CCCCcHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 467777643 23445555566677788889998887665433322 11111 36999999865
No 333
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=23.71 E-value=2.6e+02 Score=29.37 Aligned_cols=66 Identities=11% Similarity=0.074 Sum_probs=37.2
Q ss_pred CCCCCCCCCCcEEEEEccCcCCcccccccchhHHHHHHHHCCC-EEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCC
Q 014368 1 MAAHDLSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA-VPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDP 77 (426)
Q Consensus 1 ~~~~~~~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga-~~vivp~~~~~~~l~~~le~~DGVILsGG~didp 77 (426)
|+.--++..+++|++.... .....+.+...|. .++..+...+.+++.+.+..+|++++.+...++.
T Consensus 1 ~~~~~~~~~~~~ili~~~~-----------~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~ 67 (409)
T PRK11790 1 MAKVSLPKDKIKFLLLEGV-----------HQSAVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTE 67 (409)
T ss_pred CCCCCCCCCCeEEEEECCC-----------CHHHHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCH
Confidence 3444445555677665321 2334556666676 5554443334566666778899887665544443
No 334
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=23.57 E-value=2.9e+02 Score=31.12 Aligned_cols=72 Identities=15% Similarity=0.048 Sum_probs=36.2
Q ss_pred CCCCCcEEEEEccCc-CCcccccc----cchhHHHHHHHHC-CCEEEEEcCC-CChhhhh----hh--cCCCCEEEECCC
Q 014368 6 LSVILPRVLIVSRRS-VRKNKFVD----FVGEYHLDLIVGY-GAVPAIVPRV-SGVHMLL----DS--FEPIHGVLLCEG 72 (426)
Q Consensus 6 ~~~~~P~igI~~~~~-~~~~~~~~----~v~~~yl~~l~~~-Ga~~vivp~~-~~~~~l~----~~--le~~DGVILsGG 72 (426)
....+|+++|++..+ .......+ .+.+.+-...... |+.++.+... .+.+.|. +. .+.+|-||.+||
T Consensus 454 ~~~~~~rvaIIt~sde~~~~~~~D~sg~~~~~il~~n~~~l~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVItTGG 533 (659)
T PLN02699 454 AQNPEVKVAILTVSDTVSSGAGPDRSGPRAVSVVNSSSEKLGGAKVVATAVVPDDVEKIKDVLQKWSDIDRMDLILTLGG 533 (659)
T ss_pred cccCCcEEEEEEECCcccCCCcccccchHHHHHHHhhhhhcCCcEEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 334578999987543 22222222 2222221122333 8877643322 2333333 32 246899999999
Q ss_pred CCCCC
Q 014368 73 EDIDP 77 (426)
Q Consensus 73 ~didp 77 (426)
.++++
T Consensus 534 ts~g~ 538 (659)
T PLN02699 534 TGFTP 538 (659)
T ss_pred ccCCC
Confidence 76554
No 335
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=23.46 E-value=1e+02 Score=27.77 Aligned_cols=59 Identities=22% Similarity=0.154 Sum_probs=35.5
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCC-----EEEEEcCCCCh----hhhhhhcCCCCEEEECC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA-----VPAIVPRVSGV----HMLLDSFEPIHGVLLCE 71 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga-----~~vivp~~~~~----~~l~~~le~~DGVILsG 71 (426)
.++|+|+..+ +....++-+-+.-++.+.+.|+ ..+-||-..+. ..+.+. ..+||||..|
T Consensus 3 ~~ri~IV~s~--~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~-~~~Davi~lG 70 (144)
T PF00885_consen 3 GLRIAIVVSR--FNEEITDRLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAES-GRYDAVIALG 70 (144)
T ss_dssp TEEEEEEEES--TTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHC-STESEEEEEE
T ss_pred CCEEEEEEEe--ccHHHHHHHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcc-cCccEEEEec
Confidence 4688888654 1223345555667888999997 44556632221 222222 4699999887
No 336
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=23.08 E-value=3.8e+02 Score=26.58 Aligned_cols=61 Identities=5% Similarity=-0.075 Sum_probs=34.4
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCC-EEEEEcCCCChh----hhhhhc-CCCCEEEECCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA-VPAIVPRVSGVH----MLLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga-~~vivp~~~~~~----~l~~~l-e~~DGVILsGG 72 (426)
..+||++... ..+.|..-+-....+++.+.|. .+++.....+.+ .+.... ..+||+|+++.
T Consensus 24 ~~~Igvv~~~--~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 90 (330)
T PRK15395 24 DTRIGVTIYK--YDDNFMSVVRKAIEKDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV 90 (330)
T ss_pred CceEEEEEec--CcchHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 3567777532 2355555555666677888864 555434332221 222222 37999999865
No 337
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=23.02 E-value=2.8e+02 Score=28.23 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=27.3
Q ss_pred HHHHHHHCCCEEEEEcCCC------Chhhhhhhc-CCCCEEEECCCCCCCCC
Q 014368 34 HLDLIVGYGAVPAIVPRVS------GVHMLLDSF-EPIHGVLLCEGEDIDPS 78 (426)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~------~~~~l~~~l-e~~DGVILsGG~didp~ 78 (426)
|...+...|+.++.+|.+. +.+.+.+.+ .....|+++ .|+ +|.
T Consensus 130 ~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~-nP~-NPT 179 (396)
T PRK09147 130 YEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVC-SPG-NPT 179 (396)
T ss_pred hHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhhccEEEEEc-CCC-CCc
Confidence 5667778999999998742 234443322 357888887 443 453
No 338
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=22.81 E-value=4.6e+02 Score=26.18 Aligned_cols=60 Identities=8% Similarity=-0.056 Sum_probs=36.1
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCC--CChhhhhhhc-----CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV--SGVHMLLDSF-----EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~--~~~~~l~~~l-----e~~DGVILsGG 72 (426)
..||++... ..+.++..+-...-+++...|..+++.... .+.+...+.+ ..+||||+.+.
T Consensus 47 ~~Igvv~p~--~~~~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~ 113 (343)
T PRK10936 47 WKLCALYPH--LKDSYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAV 113 (343)
T ss_pred eEEEEEecC--CCchHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 467777643 224455555566777888899998887532 2222111111 36999999864
No 339
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=22.54 E-value=1.8e+02 Score=28.36 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=35.5
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhh----c-CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDS----F-EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~----l-e~~DGVILsGG 72 (426)
..||++... ..+.+..-+-....+.+...|..++++....+.+...+. . ..+||+|+.+.
T Consensus 60 ~~Ig~i~~~--~~~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdGvIi~~~ 124 (311)
T TIGR02405 60 KVVAVIVSR--LDSPSENLAVSGMLPVFYTAGYDPIIMESQFSPQLTNEHLSVLQKRNVDGVILFGF 124 (311)
T ss_pred CEEEEEeCC--cccccHHHHHHHHHHHHHHCCCeEEEecCCCChHHHHHHHHHHHhcCCCEEEEeCC
Confidence 468877632 123333334455666788899998887654443322111 1 26999999864
No 340
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=22.34 E-value=2e+02 Score=28.00 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=31.2
Q ss_pred HHHHHHHCCCEEE-EEcCCCChhhhhhhcCCCCEEEECCC
Q 014368 34 HLDLIVGYGAVPA-IVPRVSGVHMLLDSFEPIHGVLLCEG 72 (426)
Q Consensus 34 yl~~l~~~Ga~~v-ivp~~~~~~~l~~~le~~DGVILsGG 72 (426)
-++.+++.|+.+= .+.+.+..+.+...++.+|.|++..-
T Consensus 101 ~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsV 140 (220)
T COG0036 101 TIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSV 140 (220)
T ss_pred HHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeE
Confidence 4678889998884 55566778888899999999999754
No 341
>TIGR01715 phage_lam_T phage tail assembly protein T. This model represents a translation of the T gene in phage lambda and related phage. A translational frameshift from the upstream gene G into the frame of T produces a minor protein gpG-T, essential in tail assembly but not found in the mature virion.
Probab=21.71 E-value=83 Score=26.76 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.5
Q ss_pred HHHHhhcCHHHHHhHHHHHHH
Q 014368 384 RNVIGKMSVEQLSDLMSFYFT 404 (426)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~ 404 (426)
|+|++.||..++.|-..||..
T Consensus 7 R~mLa~MSstEy~dW~~~f~~ 27 (100)
T TIGR01715 7 RAMLAGMSSTEYGDWARFYRT 27 (100)
T ss_pred HHHHHhccHHHHHHHHHHHhc
Confidence 889999999999999999974
No 342
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=21.69 E-value=63 Score=27.42 Aligned_cols=49 Identities=22% Similarity=0.361 Sum_probs=35.2
Q ss_pred hhHHHhhhhHHHHHHHHHH----HhhcCHHHHHhHHHHHHHHHHHhHHHHHHH
Q 014368 368 SYLERLKLNEERERLARNV----IGKMSVEQLSDLMSFYFTMGQICSEVLEKK 416 (426)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (426)
-|++.+.-+-..+..+-.| +..--.+-+.+.++||..+|-|..+|.++=
T Consensus 6 ~~L~~iP~~~~s~~~~~eWLefLve~~G~~~~~~~L~YY~~igWISe~V~~~L 58 (99)
T PF04659_consen 6 PYLETIPEDYVSEIVVFEWLEFLVERVGHNNAADALDYYESIGWISEEVREQL 58 (99)
T ss_pred chhhcCCcchHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcCCcCHHHHHHH
Confidence 3555555554555555443 556677889999999999999999998753
No 343
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=21.34 E-value=1.3e+02 Score=24.48 Aligned_cols=32 Identities=3% Similarity=0.092 Sum_probs=23.9
Q ss_pred HHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCC
Q 014368 35 LDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGE 73 (426)
Q Consensus 35 l~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~ 73 (426)
-++|++.|..++.+.... .+.++|++|++|..
T Consensus 14 ~~~L~~~GyeVv~l~~~~-------~~~~~daiVvtG~~ 45 (80)
T PF03698_consen 14 KEALREKGYEVVDLENEQ-------DLQNVDAIVVTGQD 45 (80)
T ss_pred HHHHHHCCCEEEecCCcc-------ccCCcCEEEEECCC
Confidence 456999999999775322 13579999999974
No 344
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=21.15 E-value=2.1e+02 Score=27.65 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=31.8
Q ss_pred HHHHHHHHCCCEEE-EEcCCCChhhhhhhcCCCCEEEECCC
Q 014368 33 YHLDLIVGYGAVPA-IVPRVSGVHMLLDSFEPIHGVLLCEG 72 (426)
Q Consensus 33 ~yl~~l~~~Ga~~v-ivp~~~~~~~l~~~le~~DGVILsGG 72 (426)
..++.++++|+.+= .+.+.++.+.+...++.+|.|++...
T Consensus 101 ~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV 141 (223)
T PRK08745 101 RTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSV 141 (223)
T ss_pred HHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEE
Confidence 46788999998874 45556788888889999999999754
No 345
>TIGR01196 edd 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous.
Probab=21.04 E-value=3.3e+02 Score=30.35 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=28.5
Q ss_pred CCcEEEEEccCcC--CcccccccchhHHHHHHHHCCCEEEEE
Q 014368 9 ILPRVLIVSRRSV--RKNKFVDFVGEYHLDLIVGYGAVPAIV 48 (426)
Q Consensus 9 ~~P~igI~~~~~~--~~~~~~~~v~~~yl~~l~~~Ga~~viv 48 (426)
.+|.|||++.++. ..+....-+.+..-+.+.++|+.+...
T Consensus 63 ~kP~IgIvns~~d~~p~h~hl~~~~~~vk~~i~~aGg~~~~~ 104 (601)
T TIGR01196 63 KRPNLAIITAYNDMLSAHQPFKNYPDLIKKALQEANAVAQVA 104 (601)
T ss_pred CCCEEEEEeccccCccccccHHHHHHHHHHHHHHCCCEeEEe
Confidence 5899999998763 455444444555556688889999877
No 346
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=21.01 E-value=5.3e+02 Score=25.11 Aligned_cols=58 Identities=9% Similarity=-0.021 Sum_probs=34.6
Q ss_pred cEEEEEccCc--CCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 014368 11 PRVLIVSRRS--VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~--~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG 72 (426)
..|+|+...+ ...+.|...+-....+.+.+.|..+++... ...+ .....+||||+.+-
T Consensus 64 ~~i~v~~~~~~~~~~~~f~~~l~~~i~~~~~~~g~~~~~~~~-~~~~---~~~~~vDgiI~~~~ 123 (327)
T PRK10339 64 HILAIYSYQQELEINDPYYLAIRHGIETQCEKLGIELTNCYE-HSGL---PDIKNVTGILIVGK 123 (327)
T ss_pred cEEEEEEccccccccCchHHHHHHHHHHHHHHCCCEEEEeec-cccc---cccccCCEEEEeCC
Confidence 4667765321 223555555556666778889988776532 2111 12467999999863
No 347
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=20.85 E-value=1.4e+02 Score=26.72 Aligned_cols=11 Identities=45% Similarity=0.510 Sum_probs=9.3
Q ss_pred CCCEEEECCCC
Q 014368 63 PIHGVLLCEGE 73 (426)
Q Consensus 63 ~~DGVILsGG~ 73 (426)
.++||.|+||+
T Consensus 61 ~~~gVt~SGGE 71 (147)
T TIGR02826 61 LISCVLFLGGE 71 (147)
T ss_pred CCCEEEEechh
Confidence 35899999996
No 348
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=20.73 E-value=3.2e+02 Score=25.92 Aligned_cols=59 Identities=3% Similarity=-0.065 Sum_probs=33.3
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC----Chhh----hhhhc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS----GVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~----~~~~----l~~~l-e~~DGVILsGG 72 (426)
|||+... ...+.|+.-+-...-+.+...|..+++.+... +.+. +.... ..+||||+.+.
T Consensus 2 Igvi~~~-~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~ 69 (280)
T cd06303 2 IAVIYPG-QQISDYWVRNIASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLD 69 (280)
T ss_pred eeEEecC-ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 5666432 11234555555566777888998888764321 1111 11111 37999999865
No 349
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=20.64 E-value=1.2e+02 Score=34.25 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=22.0
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcC------CCCEEEECCCCC
Q 014368 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFE------PIHGVLLCEGED 74 (426)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~le------~~DGVILsGG~d 74 (426)
.+++.+. . ...||+|-+...- +...++ .+.|||||||..
T Consensus 238 ~~~~~l~-~-~~lVIt~gdR~Di-~l~al~~~~~~~~~a~lIlTgg~~ 282 (684)
T PRK05632 238 NMLEHLK-P-GSLVVTPGDRSDV-ILAALLAAMNGPPIAGLLLTGGYE 282 (684)
T ss_pred HHHHhcc-C-CcEEEeCCChHHH-HHHHHHhcccCCCceEEEEcCCCC
Confidence 3445454 2 4566777554422 222223 489999999964
No 350
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=20.47 E-value=4.8e+02 Score=25.66 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=29.7
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG 72 (426)
+|+|--++++.. ...-...+...|+.|++.... ++..+.....|+++|-=|
T Consensus 8 ~PLVh~ITN~Vt---------~n~~AN~~LA~GasPiMa~~~---~E~~e~~~~a~al~iNiG 58 (246)
T PF02110_consen 8 RPLVHCITNYVT---------ANDVANALLAIGASPIMAEAP---EEVEEFASIADALVINIG 58 (246)
T ss_dssp --EEEEE--TTT---------HHHHHHHHHHCTSEEEE--ST---TTHHHHHHCTSEEEEEST
T ss_pred CCeEEEccccch---------hhhHHHHHHHcCCCccccCCH---HHHHHHHHHcCEEEEECC
Confidence 577777776633 111245688999999998754 444455556899998655
No 351
>PRK05839 hypothetical protein; Provisional
Probab=20.43 E-value=3.6e+02 Score=27.35 Aligned_cols=37 Identities=11% Similarity=0.065 Sum_probs=24.1
Q ss_pred HHHHHHHCCCEEEEEcCCCC----hhhhhhhcCCCCEEEEC
Q 014368 34 HLDLIVGYGAVPAIVPRVSG----VHMLLDSFEPIHGVLLC 70 (426)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~----~~~l~~~le~~DGVILs 70 (426)
|...+...|+.++.+|.+.+ .+.....++..+.|+++
T Consensus 122 ~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~~~~~k~v~i~ 162 (374)
T PRK05839 122 YEGAAIASRAKVLLMPLTKENDFTPSLNEKELQEVDLVILN 162 (374)
T ss_pred hHHHHHhcCCEEEEeecccccCCcCCcchhhhccccEEEEe
Confidence 57778889999999887432 11111223567888887
No 352
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=20.26 E-value=6.1e+02 Score=24.78 Aligned_cols=95 Identities=21% Similarity=0.258 Sum_probs=48.7
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
++.|+|+...+. +...++.|...|. ++++...++... .....+-+..|+-+ +.
T Consensus 2 ~~~IlvlgGT~e---------gr~la~~L~~~g~-~v~~Svat~~g~----~~~~~~~v~~G~l~-------------~~ 54 (248)
T PRK08057 2 MPRILLLGGTSE---------ARALARALAAAGV-DIVLSLAGRTGG----PADLPGPVRVGGFG-------------GA 54 (248)
T ss_pred CceEEEEechHH---------HHHHHHHHHhCCC-eEEEEEccCCCC----cccCCceEEECCCC-------------CH
Confidence 467788776532 2334566777775 444433333222 22334455566631 23
Q ss_pred hHHHHHHhhcCCCcccc---chhhHHHHHHHHHHHHcCCCEEEEe
Q 014368 90 EELEEIRRLHTSDTAID---KEKDSIELRLAKLCLERNIPYLGIC 131 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d---~~rd~~e~~lir~ale~~iPILGIC 131 (426)
+++..+-+.+.-+..+| |.-..+-..+++.|.+.++|++=.=
T Consensus 55 ~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 55 EGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred HHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 45533333333333333 2233444567778888889988653
Done!