Query 014368
Match_columns 426
No_of_seqs 293 out of 1790
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 10:19:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014368.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014368hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fij_A LIN1909 protein; 11172J 100.0 5.5E-44 1.9E-48 345.5 21.5 238 9-286 3-246 (254)
2 1l9x_A Gamma-glutamyl hydrolas 100.0 1.8E-33 6.2E-38 280.3 11.0 219 8-282 28-278 (315)
3 2a9v_A GMP synthase; structura 100.0 3.7E-32 1.3E-36 256.0 19.3 193 8-285 11-204 (212)
4 1qdl_B Protein (anthranilate s 100.0 2.2E-30 7.4E-35 240.3 21.7 185 13-278 4-193 (195)
5 2vpi_A GMP synthase; guanine m 100.0 3.2E-31 1.1E-35 251.0 16.0 187 10-281 24-211 (218)
6 1wl8_A GMP synthase [glutamine 100.0 3.1E-30 1E-34 237.6 20.8 186 12-281 2-187 (189)
7 1a9x_B Carbamoyl phosphate syn 100.0 1.5E-29 5.1E-34 257.6 21.8 174 32-285 202-378 (379)
8 1i1q_B Anthranilate synthase c 100.0 4.6E-29 1.6E-33 230.6 22.2 188 11-281 1-190 (192)
9 1gpm_A GMP synthetase, XMP ami 100.0 8.3E-29 2.8E-33 262.2 17.3 192 10-278 7-199 (525)
10 2ywb_A GMP synthase [glutamine 100.0 4.4E-29 1.5E-33 263.0 13.6 184 13-281 2-185 (503)
11 3tqi_A GMP synthase [glutamine 100.0 1.9E-29 6.4E-34 267.2 10.4 193 10-279 10-203 (527)
12 3nva_A CTP synthase; rossman f 100.0 3.2E-28 1.1E-32 254.5 19.3 221 11-281 294-533 (535)
13 1o1y_A Conserved hypothetical 100.0 9.8E-28 3.3E-32 229.8 18.1 191 10-282 12-202 (239)
14 3uow_A GMP synthetase; structu 100.0 2.4E-27 8.3E-32 252.5 21.1 204 11-279 8-228 (556)
15 2w7t_A CTP synthetase, putativ 99.9 5.4E-28 1.9E-32 236.2 13.0 218 11-283 9-257 (273)
16 2v4u_A CTP synthase 2; pyrimid 99.9 1.5E-27 5.2E-32 234.8 14.2 152 113-286 108-280 (289)
17 2vxo_A GMP synthase [glutamine 99.9 2.2E-27 7.7E-32 258.2 15.9 167 34-277 45-211 (697)
18 1vco_A CTP synthetase; tetrame 99.9 2.5E-27 8.4E-32 250.8 15.6 226 10-285 300-548 (550)
19 1s1m_A CTP synthase; CTP synth 99.9 4.4E-27 1.5E-31 248.7 16.9 220 11-286 290-542 (545)
20 3l7n_A Putative uncharacterize 99.9 3.4E-26 1.2E-30 218.3 17.0 178 33-283 16-197 (236)
21 3r75_A Anthranilate/para-amino 99.9 2.9E-26 1E-30 247.6 16.8 190 11-283 447-636 (645)
22 3d54_D Phosphoribosylformylgly 99.9 9.8E-26 3.3E-30 210.1 17.9 200 10-281 2-212 (213)
23 3m3p_A Glutamine amido transfe 99.9 1E-25 3.5E-30 217.7 15.4 161 32-257 18-181 (250)
24 2ywj_A Glutamine amidotransfer 99.9 7.5E-26 2.6E-30 207.5 13.6 182 12-281 2-184 (186)
25 1q7r_A Predicted amidotransfer 99.9 2.4E-25 8.3E-30 210.0 14.8 191 10-284 23-213 (219)
26 2ywd_A Glutamine amidotransfer 99.9 3.7E-25 1.3E-29 203.0 13.6 188 9-281 1-190 (191)
27 2nv0_A Glutamine amidotransfer 99.9 1.6E-24 5.6E-29 200.2 17.2 192 11-286 2-193 (196)
28 4gud_A Imidazole glycerol phos 99.9 7E-26 2.4E-30 211.4 7.8 201 11-282 3-206 (211)
29 1gpw_B Amidotransferase HISH; 99.9 2.3E-25 8E-30 206.6 4.9 187 12-282 2-199 (201)
30 2iss_D Glutamine amidotransfer 99.9 2.8E-23 9.7E-28 194.2 12.9 188 10-280 20-207 (208)
31 2abw_A PDX2 protein, glutamina 99.9 3.5E-23 1.2E-27 195.8 13.5 202 10-287 3-220 (227)
32 1ka9_H Imidazole glycerol phos 99.9 1.4E-23 4.7E-28 194.9 7.7 189 11-280 3-200 (200)
33 1jvn_A Glutamine, bifunctional 99.9 2.9E-23 9.8E-28 221.1 1.7 199 10-280 4-215 (555)
34 2vdj_A Homoserine O-succinyltr 99.7 4.4E-17 1.5E-21 161.2 18.4 137 62-258 98-241 (301)
35 2h2w_A Homoserine O-succinyltr 99.7 5E-17 1.7E-21 161.3 18.8 182 12-258 49-252 (312)
36 3ugj_A Phosphoribosylformylgly 99.3 7.6E-11 2.6E-15 135.4 18.6 223 9-280 1046-1302(1303)
37 3l4e_A Uncharacterized peptida 98.3 3.8E-07 1.3E-11 85.2 5.4 100 11-139 28-128 (206)
38 1fy2_A Aspartyl dipeptidase; s 98.3 5.2E-07 1.8E-11 85.4 5.0 99 10-140 31-129 (229)
39 1oi4_A Hypothetical protein YH 97.7 7E-05 2.4E-09 68.4 8.4 97 10-140 23-134 (193)
40 4hcj_A THIJ/PFPI domain protei 97.2 0.00068 2.3E-08 61.5 7.0 101 6-140 4-117 (177)
41 1vhq_A Enhancing lycopene bios 97.1 0.00097 3.3E-08 62.5 8.0 32 111-142 120-151 (232)
42 2rk3_A Protein DJ-1; parkinson 97.0 0.0012 4.2E-08 60.0 7.0 98 10-140 3-115 (197)
43 3l18_A Intracellular protease 96.9 0.0014 4.9E-08 57.8 6.8 96 11-140 3-111 (168)
44 2vrn_A Protease I, DR1199; cys 96.8 0.0019 6.5E-08 58.2 6.8 96 11-140 10-124 (190)
45 3l3b_A ES1 family protein; ssg 96.8 0.0043 1.5E-07 59.0 9.4 30 112-141 139-168 (242)
46 2ab0_A YAJL; DJ-1/THIJ superfa 96.8 0.0013 4.5E-08 60.4 5.6 97 11-140 3-116 (205)
47 4e08_A DJ-1 beta; flavodoxin-l 96.7 0.0038 1.3E-07 56.4 7.8 99 9-140 4-116 (190)
48 2fex_A Conserved hypothetical 96.6 0.0043 1.5E-07 55.9 7.6 95 11-140 2-110 (188)
49 3f5d_A Protein YDEA; unknow pr 96.6 0.009 3.1E-07 55.1 9.7 95 10-140 3-109 (206)
50 3efe_A THIJ/PFPI family protei 96.4 0.016 5.4E-07 53.5 10.0 28 113-140 94-121 (212)
51 3n7t_A Macrophage binding prot 96.1 0.017 5.8E-07 55.0 8.8 29 112-140 126-154 (247)
52 1u9c_A APC35852; structural ge 96.0 0.009 3.1E-07 55.1 6.4 29 112-140 110-138 (224)
53 3kkl_A Probable chaperone prot 95.8 0.022 7.6E-07 54.0 8.1 29 112-140 119-147 (244)
54 1rw7_A YDR533CP; alpha-beta sa 95.8 0.023 7.7E-07 53.5 8.1 29 112-140 119-147 (243)
55 3uk7_A Class I glutamine amido 95.7 0.024 8.1E-07 57.0 8.4 98 9-140 204-330 (396)
56 3ej6_A Catalase-3; heme, hydro 95.7 0.048 1.7E-06 59.0 11.2 105 11-140 538-646 (688)
57 3ttv_A Catalase HPII; heme ori 95.7 0.012 3.9E-07 64.3 6.4 95 11-140 601-708 (753)
58 3uk7_A Class I glutamine amido 95.6 0.017 5.8E-07 58.1 6.9 97 10-140 12-137 (396)
59 3en0_A Cyanophycinase; serine 95.6 0.0078 2.7E-07 58.9 4.0 98 11-139 57-160 (291)
60 3ot1_A 4-methyl-5(B-hydroxyeth 95.5 0.013 4.4E-07 53.8 5.1 98 9-139 8-120 (208)
61 3cne_A Putative protease I; st 95.4 0.01 3.5E-07 52.6 4.0 30 111-140 91-120 (175)
62 3noq_A THIJ/PFPI family protei 95.3 0.018 6.1E-07 54.0 5.6 28 113-140 86-113 (231)
63 3fse_A Two-domain protein cont 94.8 0.035 1.2E-06 55.9 6.2 97 10-140 10-121 (365)
64 1sy7_A Catalase 1; heme oxidat 94.4 0.059 2E-06 58.8 7.2 98 11-142 535-646 (715)
65 3er6_A Putative transcriptiona 94.2 0.097 3.3E-06 48.0 7.2 29 112-140 96-124 (209)
66 2iuf_A Catalase; oxidoreductas 94.0 0.1 3.5E-06 56.6 7.9 113 11-140 530-648 (688)
67 3ewn_A THIJ/PFPI family protei 94.0 0.067 2.3E-06 51.0 5.9 29 112-140 105-133 (253)
68 3gra_A Transcriptional regulat 93.9 0.068 2.3E-06 48.8 5.6 27 114-140 91-117 (202)
69 3mgk_A Intracellular protease/ 92.5 0.042 1.4E-06 50.6 1.9 29 112-140 85-113 (211)
70 1n57_A Chaperone HSP31, protei 92.4 0.065 2.2E-06 52.0 3.1 53 61-141 143-195 (291)
71 1mkz_A Molybdenum cofactor bio 90.3 0.55 1.9E-05 41.9 6.8 76 1-77 1-83 (172)
72 4gdh_A DJ-1, uncharacterized p 88.8 0.5 1.7E-05 42.7 5.4 24 113-136 95-119 (194)
73 1y5e_A Molybdenum cofactor bio 87.0 0.98 3.3E-05 40.0 6.0 75 1-76 1-85 (169)
74 3pzy_A MOG; ssgcid, seattle st 85.6 0.55 1.9E-05 41.7 3.6 66 8-76 5-79 (164)
75 2an1_A Putative kinase; struct 82.8 0.98 3.3E-05 43.2 4.3 84 10-133 5-96 (292)
76 3kbq_A Protein TA0487; structu 82.1 0.99 3.4E-05 40.6 3.7 67 9-75 2-74 (172)
77 3rfq_A Pterin-4-alpha-carbinol 81.9 1.4 4.9E-05 39.9 4.8 68 9-77 29-103 (185)
78 2pjk_A 178AA long hypothetical 81.9 1.5 5.3E-05 39.3 4.9 69 9-77 14-95 (178)
79 2is8_A Molybdopterin biosynthe 80.0 0.95 3.3E-05 39.9 2.9 67 10-76 1-75 (164)
80 3bhn_A THIJ/PFPI domain protei 79.9 0.36 1.2E-05 45.4 0.0 20 121-140 108-128 (236)
81 1u0t_A Inorganic polyphosphate 79.4 4.2 0.00014 39.3 7.5 37 11-50 5-41 (307)
82 1z0s_A Probable inorganic poly 79.4 2.4 8.2E-05 40.9 5.7 47 12-72 31-77 (278)
83 3tb6_A Arabinose metabolism tr 78.7 10 0.00034 34.7 9.6 61 10-72 15-80 (298)
84 3l49_A ABC sugar (ribose) tran 76.4 10 0.00035 34.6 9.0 61 10-72 5-70 (291)
85 3h75_A Periplasmic sugar-bindi 76.1 3.6 0.00012 39.3 6.0 61 10-71 3-70 (350)
86 1jlj_A Gephyrin; globular alph 75.9 2.2 7.6E-05 38.6 4.1 68 10-77 14-92 (189)
87 2g2c_A Putative molybdenum cof 74.9 1.4 4.9E-05 38.9 2.5 68 9-76 4-82 (167)
88 3gv0_A Transcriptional regulat 74.5 8.9 0.0003 35.3 8.0 62 11-72 9-75 (288)
89 1g8l_A Molybdopterin biosynthe 74.2 3.1 0.00011 42.3 5.1 67 10-76 177-256 (411)
90 2pbq_A Molybdenum cofactor bio 74.1 2.2 7.4E-05 38.2 3.5 66 9-76 4-81 (178)
91 3l6u_A ABC-type sugar transpor 74.1 16 0.00054 33.4 9.6 60 11-72 9-73 (293)
92 2qv7_A Diacylglycerol kinase D 73.5 8 0.00027 37.6 7.7 62 10-72 24-89 (337)
93 1di6_A MOGA, molybdenum cofact 73.5 2.2 7.5E-05 38.9 3.4 66 10-77 3-80 (195)
94 3o74_A Fructose transport syst 73.4 15 0.00052 33.0 9.2 60 11-72 3-67 (272)
95 3rot_A ABC sugar transporter, 71.7 15 0.00052 33.9 9.0 61 10-72 3-70 (297)
96 2fn9_A Ribose ABC transporter, 71.4 24 0.00082 32.2 10.2 60 11-72 3-67 (290)
97 3ksm_A ABC-type sugar transpor 70.3 8.5 0.00029 34.8 6.7 60 11-72 1-68 (276)
98 3cs3_A Sugar-binding transcrip 70.1 16 0.00054 33.3 8.6 58 11-72 9-66 (277)
99 3k4h_A Putative transcriptiona 69.8 15 0.00053 33.4 8.5 62 11-72 9-78 (292)
100 3uug_A Multiple sugar-binding 69.6 14 0.00049 34.4 8.3 61 10-72 3-68 (330)
101 1wu2_A MOEA protein, molybdopt 69.5 3.7 0.00013 41.5 4.4 68 10-77 182-264 (396)
102 1uz5_A MOEA protein, 402AA lon 69.0 3.2 0.00011 42.1 3.7 67 10-76 180-259 (402)
103 3m9w_A D-xylose-binding peripl 68.9 16 0.00055 33.9 8.5 60 11-72 3-67 (313)
104 3iwt_A 178AA long hypothetical 68.3 9.2 0.00031 33.6 6.3 66 10-75 15-93 (178)
105 2fts_A Gephyrin; gephyrin, neu 66.6 3.6 0.00012 41.9 3.6 67 10-76 181-260 (419)
106 2ioj_A Hypothetical protein AF 66.5 8.1 0.00028 32.6 5.3 70 32-139 42-113 (139)
107 3jy6_A Transcriptional regulat 66.1 19 0.00063 32.8 8.2 61 10-72 7-72 (276)
108 3h5o_A Transcriptional regulat 65.8 30 0.001 32.7 9.8 60 11-72 63-127 (339)
109 3hcw_A Maltose operon transcri 64.6 19 0.00065 33.2 8.0 62 11-72 8-77 (295)
110 3dbi_A Sugar-binding transcrip 64.0 24 0.00082 33.2 8.8 62 11-72 62-128 (338)
111 1uuy_A CNX1, molybdopterin bio 64.0 8.1 0.00028 33.9 5.0 69 8-76 3-84 (167)
112 2dri_A D-ribose-binding protei 63.8 24 0.00081 32.0 8.4 61 10-72 1-66 (271)
113 3brq_A HTH-type transcriptiona 63.7 32 0.0011 31.1 9.3 62 11-72 20-86 (296)
114 3egc_A Putative ribose operon 63.4 20 0.00067 32.8 7.8 61 11-73 9-74 (291)
115 2x7x_A Sensor protein; transfe 61.7 27 0.00092 32.7 8.6 59 11-72 7-71 (325)
116 3kke_A LACI family transcripti 61.7 27 0.00092 32.3 8.5 60 11-72 16-80 (303)
117 2fep_A Catabolite control prot 61.1 34 0.0012 31.4 9.0 60 11-72 17-81 (289)
118 3bbl_A Regulatory protein of L 60.6 30 0.001 31.6 8.6 62 11-72 5-73 (287)
119 2rgy_A Transcriptional regulat 60.2 40 0.0014 30.8 9.3 60 11-72 9-76 (290)
120 2ioy_A Periplasmic sugar-bindi 59.3 44 0.0015 30.4 9.4 60 11-72 2-66 (283)
121 3g1w_A Sugar ABC transporter; 58.6 25 0.00086 32.3 7.7 60 11-72 5-70 (305)
122 3e3m_A Transcriptional regulat 57.4 28 0.00097 33.1 8.0 60 11-72 71-135 (355)
123 3huu_A Transcription regulator 56.4 23 0.00078 32.8 7.0 62 11-72 23-92 (305)
124 2fvy_A D-galactose-binding per 56.4 36 0.0012 31.1 8.3 60 11-72 3-68 (309)
125 3qk7_A Transcriptional regulat 55.3 46 0.0016 30.5 8.9 62 11-72 7-74 (294)
126 2vk2_A YTFQ, ABC transporter p 55.1 44 0.0015 30.8 8.8 60 11-72 3-67 (306)
127 8abp_A L-arabinose-binding pro 54.8 24 0.00081 32.4 6.8 59 11-72 3-66 (306)
128 3c3k_A Alanine racemase; struc 54.1 49 0.0017 30.1 8.8 60 11-72 9-73 (285)
129 2o20_A Catabolite control prot 53.9 48 0.0016 31.0 8.9 60 11-72 64-128 (332)
130 2h3h_A Sugar ABC transporter, 53.8 58 0.002 30.0 9.4 59 11-72 2-66 (313)
131 3e61_A Putative transcriptiona 53.2 25 0.00084 31.8 6.5 59 11-71 9-72 (277)
132 2rjo_A Twin-arginine transloca 52.7 25 0.00086 33.0 6.7 61 10-72 5-72 (332)
133 3o1i_D Periplasmic protein TOR 52.6 29 0.001 31.7 7.0 60 11-72 6-72 (304)
134 3kjx_A Transcriptional regulat 52.0 40 0.0014 31.7 8.1 60 11-72 69-133 (344)
135 3d8u_A PURR transcriptional re 51.3 31 0.0011 31.0 6.9 60 11-72 4-68 (275)
136 2iks_A DNA-binding transcripti 50.5 45 0.0015 30.4 7.9 60 11-72 21-85 (293)
137 3s40_A Diacylglycerol kinase; 50.1 40 0.0014 32.1 7.6 62 10-72 8-72 (304)
138 3bil_A Probable LACI-family tr 48.5 39 0.0013 32.1 7.4 60 11-72 67-131 (348)
139 3dhn_A NAD-dependent epimerase 47.9 87 0.003 27.3 9.2 55 11-73 5-77 (227)
140 3pfn_A NAD kinase; structural 47.6 13 0.00045 37.1 3.9 34 11-47 39-72 (365)
141 3brs_A Periplasmic binding pro 46.5 43 0.0015 30.3 7.0 62 11-72 6-74 (289)
142 2i2c_A Probable inorganic poly 46.3 20 0.00067 33.8 4.7 43 12-72 2-44 (272)
143 2bon_A Lipid kinase; DAG kinas 46.1 38 0.0013 32.7 6.9 58 11-72 30-91 (332)
144 3k9c_A Transcriptional regulat 45.3 41 0.0014 30.8 6.7 59 11-72 13-75 (289)
145 2amj_A Modulator of drug activ 44.6 23 0.00077 31.8 4.7 60 11-70 13-77 (204)
146 1gud_A ALBP, D-allose-binding 44.2 62 0.0021 29.5 7.8 59 12-72 3-68 (288)
147 3clk_A Transcription regulator 44.1 38 0.0013 30.8 6.3 60 11-72 9-74 (290)
148 1tjy_A Sugar transport protein 43.4 74 0.0025 29.6 8.3 60 11-72 4-69 (316)
149 1vi6_A 30S ribosomal protein S 42.3 1.1E+02 0.0038 28.0 8.9 17 115-131 129-145 (208)
150 1jx6_A LUXP protein; protein-l 41.9 1.2E+02 0.0042 28.1 9.7 60 11-71 44-112 (342)
151 3afo_A NADH kinase POS5; alpha 41.5 7.2 0.00025 39.3 0.8 34 11-47 42-77 (388)
152 2q62_A ARSH; alpha/beta, flavo 41.3 32 0.0011 32.1 5.3 60 10-70 34-105 (247)
153 3dqp_A Oxidoreductase YLBE; al 41.2 1.5E+02 0.0051 25.7 9.6 46 28-73 10-73 (219)
154 4fe7_A Xylose operon regulator 41.1 37 0.0012 33.3 6.0 56 11-69 26-82 (412)
155 2hsg_A Glucose-resistance amyl 39.9 46 0.0016 31.1 6.3 60 11-72 61-125 (332)
156 3i6i_A Putative leucoanthocyan 39.6 36 0.0012 32.3 5.5 56 10-73 10-93 (346)
157 3g85_A Transcriptional regulat 39.2 33 0.0011 31.1 5.0 61 11-72 12-77 (289)
158 3d02_A Putative LACI-type tran 38.7 1.1E+02 0.0036 27.8 8.5 60 11-72 5-70 (303)
159 1dbq_A Purine repressor; trans 37.0 84 0.0029 28.3 7.4 60 11-72 8-72 (289)
160 2h0a_A TTHA0807, transcription 36.6 30 0.001 31.2 4.2 58 13-72 2-64 (276)
161 3ff4_A Uncharacterized protein 35.4 88 0.003 25.9 6.6 91 31-136 20-117 (122)
162 3rpe_A MDAB, modulator of drug 35.4 32 0.0011 31.7 4.1 60 11-70 26-90 (218)
163 2c92_A 6,7-dimethyl-8-ribityll 35.2 88 0.003 27.5 6.8 92 11-130 18-116 (160)
164 1ehs_A STB, heat-stable entero 35.2 5.7 0.00019 27.1 -0.7 16 127-142 32-47 (48)
165 3bch_A 40S ribosomal protein S 34.9 81 0.0028 29.8 6.9 17 115-131 165-181 (253)
166 2fzv_A Putative arsenical resi 34.8 45 0.0015 31.9 5.2 60 10-70 58-130 (279)
167 3qvo_A NMRA family protein; st 34.7 45 0.0015 29.7 5.1 57 8-72 21-97 (236)
168 3miz_A Putative transcriptiona 33.6 52 0.0018 30.1 5.4 60 11-72 14-79 (301)
169 4eg0_A D-alanine--D-alanine li 33.1 91 0.0031 29.3 7.2 60 9-70 12-72 (317)
170 1ydg_A Trp repressor binding p 32.5 47 0.0016 29.3 4.7 57 11-70 7-85 (211)
171 1oks_A RNA polymerase alpha su 32.1 61 0.0021 23.3 4.2 38 370-409 11-48 (56)
172 2zkq_b 40S ribosomal protein S 32.1 94 0.0032 30.1 7.0 17 115-131 132-148 (295)
173 2qip_A Protein of unknown func 31.2 92 0.0031 26.7 6.3 64 32-132 64-141 (165)
174 3u7r_A NADPH-dependent FMN red 31.2 61 0.0021 28.9 5.3 60 10-71 2-75 (190)
175 2r47_A Uncharacterized protein 31.0 15 0.0005 32.5 0.9 26 115-142 108-133 (157)
176 3nq4_A 6,7-dimethyl-8-ribityll 30.9 1.8E+02 0.0061 25.4 8.0 62 7-71 9-80 (156)
177 3u5c_A 40S ribosomal protein S 30.6 1.3E+02 0.0043 28.5 7.5 17 115-131 131-147 (252)
178 2hqb_A Transcriptional activat 29.7 1E+02 0.0034 28.7 6.8 62 11-72 6-72 (296)
179 3m2p_A UDP-N-acetylglucosamine 29.3 1.3E+02 0.0044 27.7 7.4 56 10-73 2-72 (311)
180 2i0f_A 6,7-dimethyl-8-ribityll 29.1 1.7E+02 0.0057 25.6 7.5 91 11-131 13-118 (157)
181 1sqs_A Conserved hypothetical 28.5 59 0.002 29.5 4.8 37 12-49 3-40 (242)
182 2qu7_A Putative transcriptiona 28.0 53 0.0018 29.8 4.4 60 11-73 9-73 (288)
183 2y39_A Nickel and cobalt resis 27.8 2.1E+02 0.0071 23.9 7.5 63 346-414 19-88 (118)
184 2vzf_A NADH-dependent FMN redu 27.5 38 0.0013 29.8 3.2 59 11-70 3-76 (197)
185 1gvn_A Epsilon; postsegregatio 26.8 29 0.001 27.6 1.9 29 386-414 57-85 (90)
186 2c5a_A GDP-mannose-3', 5'-epim 26.2 1.6E+02 0.0054 28.2 7.7 60 6-73 25-103 (379)
187 1t5b_A Acyl carrier protein ph 25.6 72 0.0025 27.4 4.6 39 12-50 3-43 (201)
188 2a5l_A Trp repressor binding p 25.5 97 0.0033 26.6 5.5 57 11-70 6-78 (200)
189 4gi5_A Quinone reductase; prot 25.3 54 0.0018 31.3 3.9 38 11-49 23-60 (280)
190 3hs3_A Ribose operon repressor 25.0 1.2E+02 0.0043 27.2 6.4 60 10-71 10-75 (277)
191 3fvw_A Putative NAD(P)H-depend 24.8 59 0.002 28.6 3.9 59 10-70 2-74 (192)
192 1eiw_A Hypothetical protein MT 24.5 56 0.0019 26.9 3.4 15 116-130 59-73 (111)
193 1byk_A Protein (trehalose oper 24.5 75 0.0026 28.1 4.6 60 11-72 3-67 (255)
194 3gbv_A Putative LACI-family tr 24.0 1.6E+02 0.0054 26.4 6.9 61 11-72 9-78 (304)
195 1qpz_A PURA, protein (purine n 24.0 1.3E+02 0.0045 28.0 6.5 60 11-72 59-123 (340)
196 3o9z_A Lipopolysaccaride biosy 23.9 2.7E+02 0.0091 26.2 8.7 31 10-48 3-33 (312)
197 1jr2_A Uroporphyrinogen-III sy 23.8 1E+02 0.0034 28.7 5.6 42 32-73 38-86 (286)
198 3rht_A (gatase1)-like protein; 23.7 70 0.0024 30.2 4.4 55 10-71 4-58 (259)
199 3dzv_A 4-methyl-5-(beta-hydrox 23.4 3.1E+02 0.011 25.8 8.9 35 35-72 33-67 (273)
200 3oa2_A WBPB; oxidoreductase, s 23.3 2E+02 0.0067 27.3 7.6 31 10-48 3-33 (318)
201 1xq6_A Unknown protein; struct 23.0 2E+02 0.007 24.9 7.3 56 10-73 4-79 (253)
202 1di0_A Lumazine synthase; tran 22.6 1.1E+02 0.0038 26.8 5.1 91 11-130 11-113 (158)
203 3st7_A Capsular polysaccharide 22.1 78 0.0027 30.1 4.5 46 28-73 10-56 (369)
204 1ejb_A Lumazine synthase; anal 22.1 1E+02 0.0034 27.3 4.8 103 10-140 16-137 (168)
205 1rvv_A Riboflavin synthase; tr 21.7 2.4E+02 0.0082 24.5 7.1 91 11-130 13-115 (154)
206 3oao_A Uncharacterized protein 21.7 1E+02 0.0034 26.7 4.6 30 375-404 65-94 (147)
207 3sxp_A ADP-L-glycero-D-mannohe 21.5 3E+02 0.01 25.7 8.6 34 9-50 9-44 (362)
208 3r6w_A FMN-dependent NADH-azor 21.3 79 0.0027 27.9 4.1 38 12-49 3-42 (212)
209 4id9_A Short-chain dehydrogena 21.2 1.4E+02 0.0047 27.9 6.0 55 11-73 20-87 (347)
210 3lft_A Uncharacterized protein 20.7 1.1E+02 0.0037 28.1 5.0 59 11-72 3-71 (295)
211 2qh8_A Uncharacterized protein 20.6 1.1E+02 0.0037 28.2 5.0 59 11-72 9-78 (302)
212 1t0b_A THUA-like protein; treh 20.5 1.3E+02 0.0046 27.9 5.6 61 10-70 7-74 (252)
213 2b99_A Riboflavin synthase; lu 20.1 2E+02 0.0069 25.1 6.2 90 10-132 2-101 (156)
No 1
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=100.00 E-value=5.5e-44 Score=345.47 Aligned_cols=238 Identities=30% Similarity=0.453 Sum_probs=188.9
Q ss_pred CCcEEEEEccCcCCc-----ccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCccccc
Q 014368 9 ILPRVLIVSRRSVRK-----NKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAE 83 (426)
Q Consensus 9 ~~P~igI~~~~~~~~-----~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~ 83 (426)
++|+|||+++..... +.-.+|+...|+++|+++|+.|+++|++.+.+ +.+.++.+|||||+||++|+|+.|+++
T Consensus 3 ~~p~IGi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~pv~lp~~~~~~-~~~~l~~~DGlil~GG~~v~P~~yg~~ 81 (254)
T 3fij_A 3 LKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPST-AVQAISLVDGLLLTGGQDITPQLYLEE 81 (254)
T ss_dssp CCCEEEEEC------------------CHHHHHHHHHHTCEEEEECCCCGGG-HHHHHHTCSEEEECCCSCCCGGGGTCC
T ss_pred CCCEEEEeCCcccccccccCCcchhhhhHHHHHHHHHCCCEEEEEeCCCchH-HHHHHhhCCEEEECCCCCCChhhcCCc
Confidence 579999998753221 23467999999999999999999999877655 777778899999999999999999987
Q ss_pred CCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcce
Q 014368 84 TSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRV 163 (426)
Q Consensus 84 ~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v 163 (426)
+. +....+++.||..++.++++++++++||||||+|||+|++++||+++++.....+ ..+
T Consensus 82 ~~--------------~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC~G~Qll~~a~Gg~v~~~~~~~~~------~~~ 141 (254)
T 3fij_A 82 PS--------------QEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGTLYQDISQVET------KAL 141 (254)
T ss_dssp CC--------------TTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHTTCCEESSGGGSSS------CCC
T ss_pred cC--------------cccCCcChhhhHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCceecccccccC------ccc
Confidence 74 3445678999999999999999999999999999999999999999987632211 123
Q ss_pred eecccCCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeC-CCCCCCC
Q 014368 164 VHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDP-DAYNPAE 242 (426)
Q Consensus 164 ~H~~~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~-~~~~~~~ 242 (426)
.|.+......++++|.+.++++|++++++ .+.|+++|+++|+.+|++++++|+++||.||||+++ +
T Consensus 142 ~h~~~~~~~~g~~~v~~~~~s~l~~~~~~-------~~~v~~~H~~~v~~l~~g~~v~a~s~dg~ieai~~~~~------ 208 (254)
T 3fij_A 142 QHLQRVDEQLGSHTIDIEPTSELAKHHPN-------KKLVNSLHHQFIKKLAPSFKVTARTADGMIEAVEGDNL------ 208 (254)
T ss_dssp CCBCCSCTTSCCEEEEECTTSSGGGTCCT-------TEEECCBCSCEESSCCSSEEEEEEETTCCEEEEEESSC------
T ss_pred cccCCCCCccceEEEEeCCCChHHHhcCC-------cEEEEEeccchhhccCCCcEEEEEeCCCcEEEEEecCC------
Confidence 44433333456999999999999998876 588999999999999999999999999999999998 6
Q ss_pred CCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHh
Q 014368 243 GKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQKK 286 (426)
Q Consensus 243 ~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~~~~~ 286 (426)
+++++|||||||++.++... ..+||++|+++|.+++.|
T Consensus 209 ~~~~~gvQfHPE~~~~~~~~------~~~lf~~Fv~~~~~~~~~ 246 (254)
T 3fij_A 209 PSWYLGVQWHPELMFQTDPE------SEQLFQALVDESKKTMVK 246 (254)
T ss_dssp SSCEEEESSCGGGTGGGCHH------HHHHHHHHHHHHHSCC--
T ss_pred CCeEEEEEcCCccCCCCCch------HHHHHHHHHHHHHHHHhh
Confidence 24699999999998864321 258999999999865443
No 2
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=100.00 E-value=1.8e-33 Score=280.26 Aligned_cols=219 Identities=18% Similarity=0.177 Sum_probs=151.4
Q ss_pred CCCcEEEEEccCcCCc---ccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCC-CCCCCccccc
Q 014368 8 VILPRVLIVSRRSVRK---NKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGE-DIDPSLYEAE 83 (426)
Q Consensus 8 ~~~P~igI~~~~~~~~---~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~-didp~~y~~~ 83 (426)
..+|+|||+++..... ..-..|+..+|+++|+++|+.++++|.+.+.+.+.+.++.+||||||||+ +++|..|++.
T Consensus 28 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dglil~GG~~~v~p~~~~~~ 107 (315)
T 1l9x_A 28 AKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKV 107 (315)
T ss_dssp CCCCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHH
T ss_pred CCCCEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEEEEeCCCcccChhhhhHH
Confidence 4479999998753221 11246888899999999999999999877767776666789999999997 8777555421
Q ss_pred CCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHc-----CCCEEEEehHHHHHHHHhCCcccccchhhhcccCC
Q 014368 84 TSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLER-----NIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCP 158 (426)
Q Consensus 84 ~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~-----~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~ 158 (426)
+..+++.+++. ++||||||+|||+|++++||++......+.+
T Consensus 108 -----------------------------~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~~~~~~~~g---- 154 (315)
T 1l9x_A 108 -----------------------------AKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATDTVD---- 154 (315)
T ss_dssp -----------------------------HHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCCEEEEEEE----
T ss_pred -----------------------------HHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCccccccccccC----
Confidence 12234444433 6999999999999999999985543211111
Q ss_pred CCcceeecccCCCCCceEEEEEe---cCCcccccccccccc--cceEEEEecccccchh--------ccCCCeEEEEEeC
Q 014368 159 ENQRVVHIDYDNYDGHRHVVKVV---KDTPLHDWFKDSLEE--EKMEIWVNSYHHQGVK--------RLAQRFVPMAFAP 225 (426)
Q Consensus 159 ~~~~v~H~~~~~~~g~~~~V~v~---~~s~L~~~~~~~~~~--~~~~~~Vns~H~~~V~--------~Lp~g~~vlA~s~ 225 (426)
...++... ++++|++.++..+.. +...+.++ +|+++|+ .+|++++++|+++
T Consensus 155 ---------------~~~p~~~~~~~~~s~L~~~~~~~~~~~l~~~~~~~~-~H~~~V~~~~~~~~~~l~~g~~v~A~s~ 218 (315)
T 1l9x_A 155 ---------------VAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTAN-FHKWSLSVKNFTMNEKLKKFFNVLTTNT 218 (315)
T ss_dssp ---------------EEECCEECSTTTTCSTTTTSCHHHHHHHHHSCCEEE-EEEEECBHHHHHTCHHHHHHEEEEEEEE
T ss_pred ---------------CCCCeeeccCCCCChHHHhcChhhhhhccccceEEE-hhhhhcCccccccccccCCCCEEEEEcC
Confidence 11233332 578888877642100 00134555 9999997 7889999999999
Q ss_pred CCeEEEE---EeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCC-------cHHHHHHHHHHHHH
Q 014368 226 DGLIEGF---YDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPG-------CPSAYQEFVKAVIA 282 (426)
Q Consensus 226 dG~Veai---e~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~-------~~~lf~~Fv~av~~ 282 (426)
||.+|+| ++++ .+++|||||||+..++.+...++|. ..+||++|+++|++
T Consensus 219 dg~ve~i~~i~~~~-------~~i~GVQfHPE~~~~e~~~~~~~p~s~~a~~~~~~lf~~Fv~~a~~ 278 (315)
T 1l9x_A 219 DGKIEFISTMEGYK-------YPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARK 278 (315)
T ss_dssp SSSCEEEEEEEESS-------SCEEEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEeccCC-------CCEEEEEeCCCCCcccccccccCCccHHHHHHHHHHHHHHHHHHHh
Confidence 9976666 6654 6799999999997633222111222 35899999999864
No 3
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=100.00 E-value=3.7e-32 Score=255.96 Aligned_cols=193 Identities=22% Similarity=0.361 Sum_probs=151.0
Q ss_pred CCCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC-CCCCCCcccccCCC
Q 014368 8 VILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG-EDIDPSLYEAETSN 86 (426)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG-~didp~~y~~~~~~ 86 (426)
-.+|+|+|++..+.+ ...|++++.++|+.++++|++.+.+++ ..+|||||||| +. +.|++..
T Consensus 11 ~~~~~i~~id~~~~~--------~~~~~~~l~~~G~~~~vv~~~~~~~~l----~~~DglIl~GG~p~---~~~~~~~-- 73 (212)
T 2a9v_A 11 HHMLKIYVVDNGGQW--------THREWRVLRELGVDTKIVPNDIDSSEL----DGLDGLVLSGGAPN---IDEELDK-- 73 (212)
T ss_dssp CCCCBEEEEEESCCT--------TCHHHHHHHHTTCBCCEEETTSCGGGG----TTCSEEEEEEECSC---GGGTGGG--
T ss_pred cccceEEEEeCCCcc--------HHHHHHHHHHCCCEEEEEeCCCCHHHH----hCCCEEEECCCCCC---CCccccc--
Confidence 357899999988653 335788899999999999986544443 45999999999 52 2233211
Q ss_pred CChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeec
Q 014368 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHI 166 (426)
Q Consensus 87 ~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~ 166 (426)
.. .+.+.+++.++|+||||+|||+|+.++||++.+....++
T Consensus 74 -----~~---------------------~l~~~~~~~~~PiLGIC~G~Qll~~~lGg~v~~~~~~~~------------- 114 (212)
T 2a9v_A 74 -----LG---------------------SVGKYIDDHNYPILGICVGAQFIALHFGASVVKAKHPEF------------- 114 (212)
T ss_dssp -----HH---------------------HHHHHHHHCCSCEEEETHHHHHHHHHTTCEEEEEEEEEE-------------
T ss_pred -----ch---------------------hHHHHHHhCCCCEEEEChHHHHHHHHhCCEEEcCCCccc-------------
Confidence 01 123444678999999999999999999999887532222
Q ss_pred ccCCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcE
Q 014368 167 DYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFI 246 (426)
Q Consensus 167 ~~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i 246 (426)
+++.+.+.+++++++.+++ .+.++++|++.|+.+|++++++|+++||.|+|+++++ .++
T Consensus 115 -------G~~~v~~~~~~~l~~~~~~-------~~~v~~~H~~~v~~l~~~~~vlA~s~d~~i~ai~~~~-------~~i 173 (212)
T 2a9v_A 115 -------GKTKVSVMHSENIFGGLPS-------EITVWENHNDEIINLPDDFTLAASSATCQVQGFYHKT-------RPI 173 (212)
T ss_dssp -------EEEEEEESCCCGGGTTCCS-------EEEEEEEEEEEEESCCTTEEEEEECSSCSCSEEEESS-------SSE
T ss_pred -------CceeeEECCCChhHhcCCC-------ceEEEeEhhhhHhhCCCCcEEEEEeCCCCEEEEEECC-------CCE
Confidence 3678888888889988775 5778999999998899999999999999999999985 689
Q ss_pred EEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHHHHHH
Q 014368 247 MGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQK 285 (426)
Q Consensus 247 ~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~~~~ 285 (426)
+|+|||||++.++.+ .++|++|+++|..+++
T Consensus 174 ~gvQfHPE~~~~~~g--------~~l~~~F~~~~~~~~~ 204 (212)
T 2a9v_A 174 YATQFHPEVEHTQYG--------RDIFRNFIGICASYRE 204 (212)
T ss_dssp EEESSCTTSTTSTTH--------HHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCccH--------HHHHHHHHHHHHHhhh
Confidence 999999999876543 5999999999877653
No 4
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=99.97 E-value=2.2e-30 Score=240.29 Aligned_cols=185 Identities=19% Similarity=0.313 Sum_probs=142.0
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhH
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~ 91 (426)
|+|+.+.+++ ...+.++++++|+.+++++.+. +.+++... .+|||||+||++ .+. ..
T Consensus 4 i~iid~~~s~--------~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~--~~dglil~gG~~-~~~--~~--------- 61 (195)
T 1qdl_B 4 TLIIDNYDSF--------VYNIAQIVGELGSYPIVIRNDEISIKGIERI--DPDRLIISPGPG-TPE--KR--------- 61 (195)
T ss_dssp EEEEECSCSS--------HHHHHHHHHHTTCEEEEEETTTSCHHHHHHH--CCSEEEECCCSS-CTT--SH---------
T ss_pred EEEEECCCch--------HHHHHHHHHhCCCEEEEEeCCCCCHHHHhhC--CCCEEEECCCCC-Chh--hh---------
Confidence 8898866442 3456788999999999999753 33344321 589999999964 121 00
Q ss_pred HHHHHhhcCCCccccchhhH-HHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCC
Q 014368 92 LEEIRRLHTSDTAIDKEKDS-IELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDN 170 (426)
Q Consensus 92 ~~~ir~~h~~~~~~d~~rd~-~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (426)
+|. .+..+++++ +.++|+||||+|||+|+.++||++.+.... .|
T Consensus 62 -----------------~~~~~~~~~i~~~-~~~~PvLGIC~G~QlL~~~~gg~v~~~~~~------------~~----- 106 (195)
T 1qdl_B 62 -----------------EDIGVSLDVIKYL-GKRTPILGVCLGHQAIGYAFGAKIRRARKV------------FH----- 106 (195)
T ss_dssp -----------------HHHTTHHHHHHHH-TTTSCEEEETHHHHHHHHHTTCEEEEEEEE------------EE-----
T ss_pred -----------------hhhhHHHHHHHHh-cCCCcEEEEehHHHHHHHHhCCEEeccCCC------------cC-----
Confidence 111 234677774 789999999999999999999998875421 23
Q ss_pred CCCceEEEEEecCC--cccccccccccccceEEEEecccccchhccCCCeEEEEEe-CCCeEEEEEeCCCCCCCCCCcEE
Q 014368 171 YDGHRHVVKVVKDT--PLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFA-PDGLIEGFYDPDAYNPAEGKFIM 247 (426)
Q Consensus 171 ~~g~~~~V~v~~~s--~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s-~dG~Veaie~~~~~~~~~~~~i~ 247 (426)
+.++++.+.+++ ++++.+++ .+.++++|++.|+.+|++++++|++ +||.|+|+++++ .+++
T Consensus 107 --g~~~~v~~~~~~~~~l~~~~~~-------~~~v~~~H~~~v~~l~~~~~vla~s~~~g~i~a~~~~~-------~~~~ 170 (195)
T 1qdl_B 107 --GKISNIILVNNSPLSLYYGIAK-------EFKATRYHSLVVDEVHRPLIVDAISAEDNEIMAIHHEE-------YPIY 170 (195)
T ss_dssp --EEEEEEEECCSSCCSTTTTCCS-------EEEEEEEEEEEEECCCTTEEEEEEESSSCCEEEEEESS-------SSEE
T ss_pred --CCceEEEECCCCHhHHHhcCCC-------ceEEeccccchhhhCCCCcEEEEEECCCCcEEEEEeCC-------CCEE
Confidence 236677776677 88888775 6889999999998899999999999 899999999985 5899
Q ss_pred EEcccCCccCCCCCCCCCCCCcHHHHHHHHH
Q 014368 248 GLQFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (426)
Q Consensus 248 GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (426)
|+|||||++.++.+ .++|++|++
T Consensus 171 gvQfHPE~~~~~~g--------~~l~~~f~~ 193 (195)
T 1qdl_B 171 GVQFHPESVGTSLG--------YKILYNFLN 193 (195)
T ss_dssp EESSBTTSTTCTTH--------HHHHHHHHH
T ss_pred EEecCCCCCCCccH--------HHHHHHHHh
Confidence 99999999886544 699999987
No 5
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=99.97 E-value=3.2e-31 Score=250.96 Aligned_cols=187 Identities=20% Similarity=0.267 Sum_probs=141.4
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
.++|+|++..+.+ . ..+.++++.+|+.++++|++.+.+++.. ..+||||||||++ +.|++...+
T Consensus 24 ~~~I~iiD~g~~~-------~-~~i~~~l~~~G~~~~vv~~~~~~~~l~~--~~~dglil~Gg~~---~~~~~~~~~--- 87 (218)
T 2vpi_A 24 EGAVVILDAGAQY-------G-KVIDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPN---SVYAEDAPW--- 87 (218)
T ss_dssp TTCEEEEECSTTT-------T-HHHHHHHHHTTCCEEEECTTCCHHHHHH--HTCSEEEEEC------------CCC---
T ss_pred CCeEEEEECCCch-------H-HHHHHHHHHCCCEEEEEECCCChHHHhh--cCCCEEEECCCCc---ccccccchh---
Confidence 4789999876432 1 3567889999999999998877666653 4699999999974 223322211
Q ss_pred hHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccC
Q 014368 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (426)
+ .+.+++.++||||||+|||+|+.++||++.+....++
T Consensus 88 ---------------~-----------~~~~~~~~~PilGIC~G~Qll~~~~GG~v~~~~~~~~---------------- 125 (218)
T 2vpi_A 88 ---------------F-----------DPAIFTIGKPVLGICYGMQMMNKVFGGTVHKKSVRED---------------- 125 (218)
T ss_dssp ---------------C-----------CGGGGTSSCCEEEETHHHHHHHHHTTCCEEEEEECSC----------------
T ss_pred ---------------H-----------HHHHHHcCCCEEEEcHHHHHHHHHhCCceEeCCCCcc----------------
Confidence 0 0122357899999999999999999999887532122
Q ss_pred CCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEE
Q 014368 170 NYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGL 249 (426)
Q Consensus 170 ~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~Gv 249 (426)
++++|.+.++++|++.+++ .+.++++|+++|+.+|++++++|++ ++.|+||++++ .+++|+
T Consensus 126 ----G~~~v~~~~~~~l~~~l~~-------~~~v~~~H~~~v~~l~~~~~vlA~s-~~~i~ai~~~~-------~~i~gv 186 (218)
T 2vpi_A 126 ----GVFNISVDNTCSLFRGLQK-------EEVVLLTHGDSVDKVADGFKVVARS-GNIVAGIANES-------KKLYGA 186 (218)
T ss_dssp ----EEEEEEECTTSGGGTTCCS-------EEEEEECSEEEESSCCTTCEEEEEE-TTEEEEEEETT-------TTEEEE
T ss_pred ----cEEEEEEccCChhHhcCCC-------CcEEeehhhhHhhhcCCCCEEEEEc-CCeEEEEEECC-------CCEEEE
Confidence 3678888888999988876 5678899999999999999999999 77999999875 689999
Q ss_pred cccCCccCCCCCCCCCCCCcHHHHHHHH-HHHH
Q 014368 250 QFHPERMRRPDSDEFDYPGCPSAYQEFV-KAVI 281 (426)
Q Consensus 250 QFHPE~~~~~~~~~~d~~~~~~lf~~Fv-~av~ 281 (426)
|||||++.++.+ .+||++|+ ++|.
T Consensus 187 QfHPE~~~~~~g--------~~l~~~F~~~~~~ 211 (218)
T 2vpi_A 187 QFHPEVGLTENG--------KVILKNFLYDIAG 211 (218)
T ss_dssp SSCTTSTTSTTH--------HHHHHHHHTTTTC
T ss_pred EcCCCCCCChhH--------HHHHHHHHHHHhC
Confidence 999999876544 69999999 6654
No 6
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=99.97 E-value=3.1e-30 Score=237.55 Aligned_cols=186 Identities=19% Similarity=0.252 Sum_probs=140.9
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhH
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~ 91 (426)
.|+|++....+ ...+.++++++|+.+++++.+.+.+++.+ ..+||||||||+ +|..+ .
T Consensus 2 mi~iid~~~~~--------~~~~~~~l~~~G~~~~~~~~~~~~~~~~~--~~~dglil~Gg~--~~~~~---~------- 59 (189)
T 1wl8_A 2 MIVIMDNGGQY--------VHRIWRTLRYLGVETKIIPNTTPLEEIKA--MNPKGIIFSGGP--SLENT---G------- 59 (189)
T ss_dssp EEEEEECSCTT--------HHHHHHHHHHTTCEEEEEETTCCHHHHHH--TCCSEEEECCCS--CTTCC---T-------
T ss_pred eEEEEECCCch--------HHHHHHHHHHCCCeEEEEECCCChHHhcc--cCCCEEEECCCC--Chhhh---h-------
Confidence 37888776442 33678889999999999998665445432 359999999997 34221 0
Q ss_pred HHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCC
Q 014368 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNY 171 (426)
Q Consensus 92 ~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (426)
.+..+++.+.+.++|+||||+|||+|+.++||++.+....++
T Consensus 60 --------------------~~~~~i~~~~~~~~PilGIC~G~Q~l~~~~gg~v~~~~~~~~------------------ 101 (189)
T 1wl8_A 60 --------------------NCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGRGEKAEY------------------ 101 (189)
T ss_dssp --------------------THHHHHHTGGGTCSCEEEETHHHHHHHHHHTCEEEECSCCSC------------------
T ss_pred --------------------hHHHHHHHHhhCCCeEEEEcHHHHHHHHHhCCceecCCCccc------------------
Confidence 124566766678999999999999999999999887431122
Q ss_pred CCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcc
Q 014368 172 DGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQF 251 (426)
Q Consensus 172 ~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQF 251 (426)
++..+.+..++++++.+++ .+.++++|++.+.++|++++++|+++||.++|+++++ .|++|+||
T Consensus 102 --G~~~~~~~~~~~l~~~~~~-------~~~~~~~h~~~v~~l~~~~~vla~s~~g~i~a~~~~~-------~~~~gvQf 165 (189)
T 1wl8_A 102 --SLVEIEIIDEXEIFKGLPK-------RLKVWESHMDEVKELPPKFKILARSETCPIEAMKHEE-------LPIYGVQF 165 (189)
T ss_dssp --EEEEEEESCC--CCTTSCS-------EEEEEECCSEEEEECCTTEEEEEEESSCSCSEEEESS-------SCEEEESS
T ss_pred --CceeEEEecCchHHhCCCC-------ceEEEEEeeeehhhCCCCcEEEEEcCCCCEEEEEeCC-------ceEEEEec
Confidence 2445555566777776665 5778889999998899999999999999999999985 56999999
Q ss_pred cCCccCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014368 252 HPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 252 HPE~~~~~~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
|||++.++.+ .++|++|+++|+
T Consensus 166 HPE~~~~~~g--------~~l~~~f~~~~~ 187 (189)
T 1wl8_A 166 HPEVAHTEKG--------EEILRNFAKLCG 187 (189)
T ss_dssp CTTSTTSTTH--------HHHHHHHHHHHC
T ss_pred CCCcCCCcch--------HHHHHHHHHHHh
Confidence 9999875543 699999999874
No 7
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.97 E-value=1.5e-29 Score=257.59 Aligned_cols=174 Identities=26% Similarity=0.411 Sum_probs=136.2
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhH
Q 014368 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (426)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~ 111 (426)
.+|+++|.++|+.++++|++.+.+++.. ..+|||||+|||+ +|. ++.
T Consensus 202 ~ni~r~L~~~G~~v~vvp~~~~~e~i~~--~~~DGliLsGGPg-dp~------------------------------~~~ 248 (379)
T 1a9x_B 202 RNILRMLVDRGCRLTIVPAQTSAEDVLK--MNPDGIFLSNGPG-DPA------------------------------PCD 248 (379)
T ss_dssp HHHHHHHHHTTEEEEEEETTCCHHHHHT--TCCSEEEECCCSB-CST------------------------------TCH
T ss_pred HHHHHHHHHCCCEEEEEeccCCHHHHhh--cCCCEEEEeCCCC-ChH------------------------------HHH
Confidence 4589999999999999999877766653 2699999999974 332 113
Q ss_pred HHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEecCCccccccc
Q 014368 112 IELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFK 191 (426)
Q Consensus 112 ~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~~ 191 (426)
.++.+++.+++.++||||||+|||+|+.++||++++.. ++ |. +.+++|.....
T Consensus 249 ~~~~~Ir~~~~~~~PILGIClG~QLLa~A~GG~v~k~~---~g----------h~------g~n~pv~~~~~-------- 301 (379)
T 1a9x_B 249 YAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMK---FG----------HH------GGNHPVKDVEK-------- 301 (379)
T ss_dssp HHHHHHHHHTTSCCCEEEETHHHHHHHHHTTCCEEEEE---EE----------EE------EEEEEEEETTT--------
T ss_pred HHHHHHHHHHHcCCCEEEECchHHHHHHHhCcEEEecc---cc----------cc------cCceeeEecCC--------
Confidence 45678899998899999999999999999999998762 33 22 23566643211
Q ss_pred ccccccceEEEEecccccchhc--cCCCeEEEEEe-CCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCC
Q 014368 192 DSLEEEKMEIWVNSYHHQGVKR--LAQRFVPMAFA-PDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPG 268 (426)
Q Consensus 192 ~~~~~~~~~~~Vns~H~~~V~~--Lp~g~~vlA~s-~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~ 268 (426)
. ..+.+.++|+++|+. ||+++++++++ +||.||||++++ .+++|||||||.+.++.+.
T Consensus 302 g------~v~its~~H~~aV~~~~Lp~~~~v~a~s~~Dg~ieai~~~~-------~pi~gVQFHPE~~~~p~d~------ 362 (379)
T 1a9x_B 302 N------VVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTD-------KPAFSFQGNPEASPGPHDA------ 362 (379)
T ss_dssp T------EEEEEEEEEEEEECSTTCCTTEEEEEEETTTCCEEEEEESS-------SSEEEESSCTTCSSSCSTT------
T ss_pred C------cEEEEecCccceEecccCCCCeEEEEEeCCCCcEEEEEECC-------CCEEEEEeCCcCCCCcccH------
Confidence 1 134456789999975 99999999999 799999999986 7899999999999876432
Q ss_pred cHHHHHHHHHHHHHHHH
Q 014368 269 CPSAYQEFVKAVIAYQK 285 (426)
Q Consensus 269 ~~~lf~~Fv~av~~~~~ 285 (426)
.+||++|++++.+++.
T Consensus 363 -~~Lf~~Fl~~~~~~~~ 378 (379)
T 1a9x_B 363 -APLFDHFIELIEQYRK 378 (379)
T ss_dssp -THHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhc
Confidence 5899999999987653
No 8
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=99.97 E-value=4.6e-29 Score=230.64 Aligned_cols=188 Identities=19% Similarity=0.231 Sum_probs=134.4
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCC--CCEEEECCCCCCCCCcccccCCCCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEP--IHGVLLCEGEDIDPSLYEAETSNLS 88 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~--~DGVILsGG~didp~~y~~~~~~~~ 88 (426)
|+|+|+++.++ +...+++++++.|+.+++++++.+.+++.+.+.. .+++||+||++ +|. +..
T Consensus 1 ~~i~iiDn~~s--------~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg-~~~---~~~---- 64 (192)
T 1i1q_B 1 ADILLLDNIDS--------FTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPG-VPS---EAG---- 64 (192)
T ss_dssp CEEEEEECSCS--------SHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSS-CGG---GST----
T ss_pred CcEEEEECCcc--------HHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCc-Cch---hCc----
Confidence 68999996644 3456788899999999999987665666554432 45799999975 221 110
Q ss_pred hhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeeccc
Q 014368 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDY 168 (426)
Q Consensus 89 ~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~ 168 (426)
....+++. ++.++||||||+|||+|+.++||++.+....++
T Consensus 65 -----------------------~~~~l~~~-~~~~~PilGIC~G~Qll~~~~Gg~v~~~~~~~~--------------- 105 (192)
T 1i1q_B 65 -----------------------CMPELLTR-LRGKLPIIGICLGHQAIVEAYGGYVGQAGEILH--------------- 105 (192)
T ss_dssp -----------------------THHHHHHH-HBTTBCEEEETHHHHHHHHHTSCCCCC---CCS---------------
T ss_pred -----------------------hHHHHHHH-HhcCCCEEEECcChHHHHHHhCCEEEeCCCcEe---------------
Confidence 11234543 567999999999999999999999876431111
Q ss_pred CCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEE
Q 014368 169 DNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMG 248 (426)
Q Consensus 169 ~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~G 248 (426)
|....+. ..++++++.+++ .+.++++|++.+..+|++++++|. .|+.++++++++ .+++|
T Consensus 106 ----g~~~~~~-~~~~~l~~~~~~-------~~~v~~~H~~~v~~lp~~~~v~a~-~~~~~~ai~~~~-------~~~~g 165 (192)
T 1i1q_B 106 ----GKATSIE-HDGQAMFAGLAN-------PLPVARYHSLVGSNVPAGLTINAH-FNGMVMAVRHDA-------DRVCG 165 (192)
T ss_dssp ----SEEEEEE-ECCCGGGTTSCS-------SEEEEECCC---CCCCTTCEEEEE-ETTEEEEEEETT-------TTEEE
T ss_pred ----cceeEEe-cCCChHHhcCCC-------CcEEEechhhHhhhCCCccEEEEC-CCCcEEEEEECC-------CCEEE
Confidence 1122222 345677776665 578999999999999999999995 468999999875 68999
Q ss_pred EcccCCccCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014368 249 LQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 249 vQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
+|||||++.++.+ .++|++|++.+.
T Consensus 166 vQfHPE~~~~~~g--------~~il~nf~~~~~ 190 (192)
T 1i1q_B 166 FQFHPESILTTQG--------ARLLEQTLAWAQ 190 (192)
T ss_dssp ESSBTTSTTCTTH--------HHHHHHHHHHHT
T ss_pred EEccCcccCCccc--------HHHHHHHHHHHh
Confidence 9999999877655 589999998753
No 9
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.96 E-value=8.3e-29 Score=262.16 Aligned_cols=192 Identities=22% Similarity=0.316 Sum_probs=148.6
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
.++|+|++..+. | ...+.++++++|+.++++|++.+.+++.+. .+||||||||++ +.|++...+
T Consensus 7 ~~~IlIlD~g~~-------~-~~~i~r~lr~~G~~~~i~p~~~~~~~i~~~--~~dgiILsGGp~---s~~~~~~~~--- 70 (525)
T 1gpm_A 7 KHRILILDFGSQ-------Y-TQLVARRVRELGVYCELWAWDVTEAQIRDF--NPSGIILSGGPE---STTEENSPR--- 70 (525)
T ss_dssp SSEEEEEECSCT-------T-HHHHHHHHHHTTCEEEEEESCCCHHHHHHH--CCSEEEECCCSS---CTTSTTCCC---
T ss_pred CCEEEEEECCCc-------c-HHHHHHHHHHCCCEEEEEECCCCHHHHhcc--CCCEEEECCcCc---cccccCCcc---
Confidence 478999986643 2 255789999999999999998877777654 579999999974 335432211
Q ss_pred hHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccC
Q 014368 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (426)
+ .+.+++.++||||||+|||+|+.++||++.+....++|
T Consensus 71 ---------------~-----------~~~~~~~g~PvLGIC~G~Qlla~~~GG~V~~~~~~e~G--------------- 109 (525)
T 1gpm_A 71 ---------------A-----------PQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREFG--------------- 109 (525)
T ss_dssp ---------------C-----------CGGGGTSSSCEEEETHHHHHHHHHHTCEEECCSSCEEE---------------
T ss_pred ---------------h-----------HHHHHHCCCCEEEEChHHHHHHHHcCCEEEeCCCcccc---------------
Confidence 0 12234679999999999999999999999876433333
Q ss_pred CCCCceEEEEEecCCcccccccccccc-cceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEE
Q 014368 170 NYDGHRHVVKVVKDTPLHDWFKDSLEE-EKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMG 248 (426)
Q Consensus 170 ~~~g~~~~V~v~~~s~L~~~~~~~~~~-~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~G 248 (426)
++.+.+.++++|++.++..... ....+.|+++|++.|+.+|++|+++|+++||.|+|+++++ .+++|
T Consensus 110 -----~~~v~~~~~~~L~~~l~~~~~~~~~~~~~v~~~H~~~V~~lp~g~~v~A~s~~~~i~ai~~~~-------~~i~g 177 (525)
T 1gpm_A 110 -----YAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFAIMANEE-------KRFYG 177 (525)
T ss_dssp -----EEEEEECSCCTTTTTCCSEECTTSCEEEEEEEEECSEEEECCTTCEEEEECSSCSCSEEEETT-------TTEEE
T ss_pred -----eEEEEeCCCCHhhccCccccccccccceEEEEEccceeeeCCCCCEEEEECCCCCEEEEEECC-------CCEEE
Confidence 6778887778888877641000 0114678999999999999999999999999999999975 78999
Q ss_pred EcccCCccCCCCCCCCCCCCcHHHHHHHHH
Q 014368 249 LQFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (426)
Q Consensus 249 vQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (426)
+|||||.+.++.+ .++|++|+.
T Consensus 178 vQFHPE~~~~~~g--------~~ll~nF~~ 199 (525)
T 1gpm_A 178 VQFHPEVTHTRQG--------MRMLERFVR 199 (525)
T ss_dssp ESBCTTSTTSTTH--------HHHHHHHHH
T ss_pred EecCCCCCcchhH--------HHHHHHHHH
Confidence 9999999987665 589999995
No 10
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.96 E-value=4.4e-29 Score=262.95 Aligned_cols=184 Identities=21% Similarity=0.340 Sum_probs=143.4
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHH
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEEL 92 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~ 92 (426)
|+|++..+. |. ..+.++++++|+.++++|++.+.+++.+. .+||||||||++ +.|++...+
T Consensus 2 i~ilD~g~~-------~~-~~i~r~l~~~G~~~~i~p~~~~~~~i~~~--~~dgiIlsGGp~---s~~~~~~~~------ 62 (503)
T 2ywb_A 2 VLVLDFGSQ-------YT-RLIARRLRELRAFSLILPGDAPLEEVLKH--RPQALILSGGPR---SVFDPDAPR------ 62 (503)
T ss_dssp EEEEESSCT-------TH-HHHHHHHHTTTCCEEEEETTCCHHHHHTT--CCSEEEECCCSS---CSSCTTCCC------
T ss_pred EEEEECCCc-------HH-HHHHHHHHHCCCEEEEEECCCCHHHHHhc--CCCEEEECCCCc---hhccCCCcc------
Confidence 677776643 22 56788999999999999998777777653 579999999985 345443211
Q ss_pred HHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCC
Q 014368 93 EEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYD 172 (426)
Q Consensus 93 ~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~ 172 (426)
.+ +.+++.++||||||+|||+|+.++||++.+....++|
T Consensus 63 ------------~~-----------~~~~~~~~PvLGIC~G~Qlla~~~GG~v~~~~~~e~G------------------ 101 (503)
T 2ywb_A 63 ------------PD-----------PRLFSSGLPLLGICYGMQLLAQELGGRVERAGRAEYG------------------ 101 (503)
T ss_dssp ------------CC-----------GGGGCSSCCEEEETHHHHHHHHTTTCEEECC---CEE------------------
T ss_pred ------------hH-----------HHHHhCCCCEEEECHHHHHHHHHhCCeEeeCCCCccc------------------
Confidence 01 2234578999999999999999999999876433443
Q ss_pred CceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEccc
Q 014368 173 GHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFH 252 (426)
Q Consensus 173 g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQFH 252 (426)
++.+.+.+ ++|++.+++ .+.|+++|++.|+.+|++|+++|+++|+.|+|+++++ .+++|+|||
T Consensus 102 --~~~v~~~~-~~l~~~~~~-------~~~v~~~H~~~v~~lp~g~~v~A~s~~~~i~ai~~~~-------~~~~gvQFH 164 (503)
T 2ywb_A 102 --KALLTRHE-GPLFRGLEG-------EVQVWMSHQDAVTAPPPGWRVVAETEENPVAAIASPD-------GRAYGVQFH 164 (503)
T ss_dssp --EEECSEEC-SGGGTTCCS-------CCEEEEECSCEEEECCTTCEEEEECSSCSCSEEECTT-------SSEEEESBC
T ss_pred --eEEEEecC-cHHhhcCCC-------ccEEEEECCCccccCCCCCEEEEEECCCCEEEEEeCC-------CCEEEEecC
Confidence 55666665 888888765 4578899999999999999999999999999999975 789999999
Q ss_pred CCccCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014368 253 PERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 253 PE~~~~~~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
||.+.++.+ .++|++|++.|.
T Consensus 165 PE~~~~~~g--------~~ll~~F~~~~~ 185 (503)
T 2ywb_A 165 PEVAHTPKG--------MQILENFLELAG 185 (503)
T ss_dssp TTSTTSTTH--------HHHHHHHHHHTT
T ss_pred CCccccccc--------HHHHHHHHHHhh
Confidence 999987655 599999997663
No 11
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.96 E-value=1.9e-29 Score=267.21 Aligned_cols=193 Identities=23% Similarity=0.335 Sum_probs=143.1
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
..+|+|++..+. | ...+.+++++.|+.++++|++.+.+++.+. .+||||||||++ +.|++...
T Consensus 10 ~~~I~IlD~g~~-------~-~~~i~r~lr~~Gv~~~i~p~~~~~~~i~~~--~~dgIILsGGp~---sv~~~~~~---- 72 (527)
T 3tqi_A 10 QHRILILDFGSQ-------Y-AQLIARRVREIGVYCELMPCDIDEETIRDF--NPHGIILSGGPE---TVTLSHTL---- 72 (527)
T ss_dssp CSEEEEEECSCT-------T-HHHHHHHHHHHTCEEEEEETTCCSSSSTTT--CCSEEEECCCCC---------------
T ss_pred CCeEEEEECCCc-------c-HHHHHHHHHHCCCeEEEEECCCCHHHHHhc--CCCEEEECCcCc---ccccCCCh----
Confidence 358999987643 2 245788899999999999998777776543 579999999974 23432211
Q ss_pred hHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccC
Q 014368 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (426)
.+.+.+++.++||||||+|||+|+.++||++.+....++|
T Consensus 73 -------------------------~~~~~~~~~~~PvLGIC~G~Qlla~~lGG~V~~~~~~e~G--------------- 112 (527)
T 3tqi_A 73 -------------------------RAPAFIFEIGCPVLGICYGMQTMAYQLGGKVNRTAKAEFG--------------- 112 (527)
T ss_dssp --------------------------CCCSTTTSSSCEEEETHHHHHHHHHSSSCBC-----CEE---------------
T ss_pred -------------------------hhHHHHHhcCCCEEEEChHHHHHHHHcCCeEEeCCCcccc---------------
Confidence 0112335679999999999999999999999876433443
Q ss_pred CCCCceEEEEEecCCccccccccccc-ccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEE
Q 014368 170 NYDGHRHVVKVVKDTPLHDWFKDSLE-EEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMG 248 (426)
Q Consensus 170 ~~~g~~~~V~v~~~s~L~~~~~~~~~-~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~G 248 (426)
++.+.+..+++|++.++.... .....+.++.+|++.|..+|++|+++|+++++.|+|+++++ .+++|
T Consensus 113 -----~~~v~~~~~~~l~~~l~~~~~~~~~~~~~v~~~H~d~v~~lp~g~~v~A~s~~~~i~ai~~~~-------~~~~G 180 (527)
T 3tqi_A 113 -----HAQLRVLNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVSELPPGFEATACTDNSPLAAMADFK-------RRFFG 180 (527)
T ss_dssp -----EEEEEESSCTTTTSSCCSBCCTTSCCEEEEEEESSSCBCSCCTTCEEEEEETTEEEEEEECSS-------SCEEE
T ss_pred -----ceEEEEcCCChhhcCCccccccccccceEEEEEcccchhccCCCCEEEEEeCCCcEEEEEcCC-------CCEEE
Confidence 677888777888887764110 00115788899999999999999999999999999999975 68999
Q ss_pred EcccCCccCCCCCCCCCCCCcHHHHHHHHHH
Q 014368 249 LQFHPERMRRPDSDEFDYPGCPSAYQEFVKA 279 (426)
Q Consensus 249 vQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a 279 (426)
+|||||.+.++.+ .++|++|+..
T Consensus 181 vQFHPE~~~t~~G--------~~ll~nF~~~ 203 (527)
T 3tqi_A 181 LQFHPEVTHTPQG--------HRILAHFVIH 203 (527)
T ss_dssp ESBCSSSTTSTTH--------HHHHHHHHHT
T ss_pred EEecccccccccc--------chhhhhhhhh
Confidence 9999999988766 5899999853
No 12
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.96 E-value=3.2e-28 Score=254.50 Aligned_cols=221 Identities=20% Similarity=0.293 Sum_probs=153.3
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCC-h--hhh--hhhcCCCCEEEECCCCCCCCCcccccCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG-V--HML--LDSFEPIHGVLLCEGEDIDPSLYEAETS 85 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~-~--~~l--~~~le~~DGVILsGG~didp~~y~~~~~ 85 (426)
.+|+++.-+..-...+.+ +.++...+-...++.+.+...+.. . +.. .+.++.+||||||||++ ++.
T Consensus 294 v~IalVGKY~~l~DaY~S-v~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~G-~~~------- 364 (535)
T 3nva_A 294 INIALVGKYTKLKDSYIS-IKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFG-SRG------- 364 (535)
T ss_dssp EEEEEEESCTTSGGGGHH-HHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCCS-STT-------
T ss_pred eEEEEEecCcCCchhHHH-HHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCCC-Ccc-------
Confidence 457776655322222211 122222333445666665543321 1 111 34577899999999964 111
Q ss_pred CCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcc--cccch-hhhcccCCCCcc
Q 014368 86 NLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTL--YQDIE-KEVSRKCPENQR 162 (426)
Q Consensus 86 ~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l--~~~~~-~e~g~~~~~~~~ 162 (426)
...++.++++++++++|+||||+|||+|++++||++ +++.+ .|+++. ...+
T Consensus 365 ------------------------~~g~i~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~g~qda~s~Ef~~~--~~~p 418 (535)
T 3nva_A 365 ------------------------AEGKIKAIKYAREHNIPFLGICFGFQLSIVEFARDVLGLSEANSTEINPN--TKDP 418 (535)
T ss_dssp ------------------------HHHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHTTTCCTTCEETTTCTT--CSCE
T ss_pred ------------------------HHHHHHHHHHHHHcCCcEEEECcchhHHHHHhhccccCccCCcccccCCC--CCCC
Confidence 022467889999999999999999999999999998 46653 455421 2233
Q ss_pred ee-eccc----CC----CCCceEEEEEecCCcccccccccccccc--eEEEEecccccchhccCCCeEEEEEeCCCeEEE
Q 014368 163 VV-HIDY----DN----YDGHRHVVKVVKDTPLHDWFKDSLEEEK--MEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEG 231 (426)
Q Consensus 163 v~-H~~~----~~----~~g~~~~V~v~~~s~L~~~~~~~~~~~~--~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Vea 231 (426)
+. |+.. .. ...+.|+|.+.++|.++++|+...+.++ |.|.||+.|+++++. ++|+++|+++||.|||
T Consensus 419 vI~~m~eq~~~~~~ggtmrlg~h~v~l~~gS~L~~iyG~~~I~erHrHryeVNs~h~q~l~~--~GL~vsA~s~DG~IEA 496 (535)
T 3nva_A 419 VITLLDEQKNVTQLGGTMRLGAQKIILKEGTIAYQLYGKKVVYERHRHRYEVNPKYVDILED--AGLVVSGISENGLVEI 496 (535)
T ss_dssp EEECBCSSSCBCSSCCCCEEEEEEEEECTTSHHHHHHTSSEEEEEEEECCEECHHHHHHHHH--TTCEEEEECTTCCEEE
T ss_pred eeecchhcccccccCCccccCceEEEEcCCCcHHHHhCCCeeeecccccceechHHHhhccc--CCeEEEEEeCCCCEEE
Confidence 33 3311 11 1236899999999999999987544443 678999999999974 8999999999999999
Q ss_pred EEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014368 232 FYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 232 ie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
|++++ ++|++|||||||+.+++... .+||++|+++|.
T Consensus 497 IE~~~------~pf~vGVQfHPE~~~~p~~~-------~~LF~~Fv~Aa~ 533 (535)
T 3nva_A 497 IELPS------NKFFVATQAHPEFKSRPTNP-------SPIYLGFIRAVA 533 (535)
T ss_dssp EECTT------SSCEEEESSCGGGGCCSSSC-------CHHHHHHHHHHT
T ss_pred EEeCC------CCcEEEEEeCCEecCCCCCh-------hHHHHHHHHHHH
Confidence 99987 46789999999999876543 499999999985
No 13
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.95 E-value=9.8e-28 Score=229.81 Aligned_cols=191 Identities=24% Similarity=0.279 Sum_probs=142.3
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
..+|+|+-... ..| ..++.+++...|+.+++++.+. .+.+.+.++.+||||||||+ ++.|++...
T Consensus 12 ~~~~~~i~~~~-~~~------~~~i~~~l~~~G~~v~v~~~~~-~~~~~~~l~~~Dglil~GG~---~~~~~~~~~---- 76 (239)
T 1o1y_A 12 HVRVLAIRHVE-IED------LGMMEDIFREKNWSFDYLDTPK-GEKLERPLEEYSLVVLLGGY---MGAYEEEKY---- 76 (239)
T ss_dssp CCEEEEECSST-TSS------CTHHHHHHHHTTCEEEEECGGG-TCCCSSCGGGCSEEEECCCS---CCTTCTTTC----
T ss_pred eeEEEEEECCC-CCC------chHHHHHHHhCCCcEEEeCCcC-ccccccchhcCCEEEECCCC---ccccCCccC----
Confidence 46777775432 112 1245677888898888777643 23344456679999999996 244554321
Q ss_pred hHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccC
Q 014368 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (426)
.|+ ..+..+++.+++.++||||||+|||+|+.++||+++++.. | .+
T Consensus 77 ---~~l---------------~~~~~~i~~~~~~~~PiLGIC~G~QlL~~alGG~v~~~~~---g---------~~---- 122 (239)
T 1o1y_A 77 ---PFL---------------KYEFQLIEEILKKEIPFLGICLGSQMLAKVLGASVYRGKN---G---------EE---- 122 (239)
T ss_dssp ---THH---------------HHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEECTT---C---------CE----
T ss_pred ---hhH---------------HHHHHHHHHHHHCCCCEEEEchhHHHHHHHcCCeEecCCC---C---------Cc----
Confidence 122 2356789999999999999999999999999999988642 1 11
Q ss_pred CCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEE
Q 014368 170 NYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGL 249 (426)
Q Consensus 170 ~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~Gv 249 (426)
.++++|...+++++++.+++ .+.++.+|++.+ .+|++++++|+++||.|+||+++ . ++|+
T Consensus 123 ---~G~~~v~~~~~~~l~~~~~~-------~~~~~~~H~~~v-~lp~~~~vlA~s~~~~iea~~~~--------~-i~gv 182 (239)
T 1o1y_A 123 ---IGWYFVEKVSDNKFFREFPD-------RLRVFQWHGDTF-DLPRRATRVFTSEKYENQGFVYG--------K-AVGL 182 (239)
T ss_dssp ---EEEEEEEECCCCGGGTTSCS-------EEEEEEEESEEE-CCCTTCEEEEECSSCSCSEEEET--------T-EEEE
T ss_pred ---cccEEEEECCCCchHHhCCC-------CceeEeecCCcc-ccCCCCEEEEEcCCCCEEEEEEC--------C-EEEE
Confidence 13677887778889888776 578889999988 68999999999999999999986 4 9999
Q ss_pred cccCCccCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 014368 250 QFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIA 282 (426)
Q Consensus 250 QFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~ 282 (426)
|||||++ ..++++|++....
T Consensus 183 QfHPE~~-------------~~~~~~~~~~~~~ 202 (239)
T 1o1y_A 183 QFHIEVG-------------ARTMKRWIEAYKD 202 (239)
T ss_dssp SSBSSCC-------------HHHHHHHHHHTHH
T ss_pred EeCccCC-------------HHHHHHHHHHhHH
Confidence 9999984 2588999886554
No 14
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.95 E-value=2.4e-27 Score=252.47 Aligned_cols=204 Identities=21% Similarity=0.270 Sum_probs=144.6
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChh
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e 90 (426)
++|+|++..+.+ ...+.+++++.|+.++++|++.+.+++.. ..+||||||||+. +.|++...+
T Consensus 8 ~~IlilD~Gs~~--------~~~I~r~lre~Gv~~eiv~~~~~~~~i~~--~~~dgIIlsGGp~---s~~~~~~~~---- 70 (556)
T 3uow_A 8 DKILVLNFGSQY--------FHLIVKRLNNIKIFSETKDYGVELKDIKD--MNIKGVILSGGPY---SVTEAGSPH---- 70 (556)
T ss_dssp CEEEEEESSCTT--------HHHHHHHHHHTTCCEEEEETTCCGGGTTT--SCEEEEEECCCSC---CTTSTTCCC----
T ss_pred CEEEEEECCCcc--------HHHHHHHHHHCCCeEEEEECCCCHHHHhh--cCCCEEEECCCCC---cccccCCcc----
Confidence 679999876542 33567889999999999999877777653 2689999999974 233332111
Q ss_pred HHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccC---CCCc-----c
Q 014368 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKC---PENQ-----R 162 (426)
Q Consensus 91 ~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~---~~~~-----~ 162 (426)
+ ...+++.+.+.++||||||+|||+|+.++||++.+....++|... .... +
T Consensus 71 --------------~-------~~~l~~~a~~~g~PvLGIC~G~QlLa~~lGG~V~~~~~~E~G~~~l~~~~~~~~~~~p 129 (556)
T 3uow_A 71 --------------L-------KKEVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNIT 129 (556)
T ss_dssp --------------C-------CHHHHHHHHHTTCCEEEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEECCTTGGGGCS
T ss_pred --------------h-------hHHHHHHhhhcCCCEEEECHHHHHHHHHhCCcEecCCCcccCCcceeeccCccccccc
Confidence 0 124567777889999999999999999999999887555555210 0000 0
Q ss_pred --------eeecccCCCCCceEEEEEecCCcccccc-cccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEE
Q 014368 163 --------VVHIDYDNYDGHRHVVKVVKDTPLHDWF-KDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFY 233 (426)
Q Consensus 163 --------v~H~~~~~~~g~~~~V~v~~~s~L~~~~-~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie 233 (426)
..|++|... .+.....+++++.+ ++ .+.++.+|++.|..+|++++++|++++|.|+|++
T Consensus 130 ~v~~~~~~~~~mg~~~n-----~~~~~~~~~Lf~gl~~~-------~~~v~~~H~d~V~~lp~g~~vlA~s~~~~i~ai~ 197 (556)
T 3uow_A 130 YCRNFGDSSSAMDLYSN-----YKLMNETCCLFENIKSD-------ITTVWMNHNDEVTKIPENFYLVSSSENCLICSIY 197 (556)
T ss_dssp GGGGC---CCHHHHHTT-----SCCCC--CGGGTTCCSS-------EEEEEEEEEEEEEECCTTCEEEEEETTEEEEEEE
T ss_pred ceecccccccccccccc-----cccccccchhhcccccC-------ceEEEEEccceeeccCCCcEEEEEeCCCCEEEEE
Confidence 011111000 00111223566666 44 6789999999999999999999999999999999
Q ss_pred eCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHH
Q 014368 234 DPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKA 279 (426)
Q Consensus 234 ~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a 279 (426)
+++ .+++|+|||||++.++.+ .++|++|+..
T Consensus 198 ~~~-------~~i~GvQFHPE~~~~~~G--------~~ll~nFl~~ 228 (556)
T 3uow_A 198 NKE-------YNIYGVQYHPEVYESLDG--------ELMFYNFAYN 228 (556)
T ss_dssp ETT-------TTEEEESSCTTSTTSTTH--------HHHHHHHHTT
T ss_pred ECC-------CCEEEEEcCCCCCccccc--------hHHHHHHHHH
Confidence 975 679999999999988765 5899999843
No 15
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.95 E-value=5.4e-28 Score=236.16 Aligned_cols=218 Identities=17% Similarity=0.214 Sum_probs=143.4
Q ss_pred cEEEEEccC-cCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh-hh-----hhhhcCCCCEEEECCCCCCCCCccccc
Q 014368 11 PRVLIVSRR-SVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-HM-----LLDSFEPIHGVLLCEGEDIDPSLYEAE 83 (426)
Q Consensus 11 P~igI~~~~-~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-~~-----l~~~le~~DGVILsGG~didp~~y~~~ 83 (426)
++|+|+..+ .....++.+++ .....+....|+.+.++..+... .. +.+.++.+||||||||++ ++.
T Consensus 9 ~~Iaivg~y~~~~~dny~S~~-~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~dgiil~GG~~-~~~----- 81 (273)
T 2w7t_A 9 VRIAFVGKYLQDAGDTYFSVL-QCFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGFG-NRG----- 81 (273)
T ss_dssp EEEEEEECCHHHHTTTTHHHH-HHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECCCCT-TTT-----
T ss_pred CEEEEEeCCCcCCchHHHHHH-HHHHHHHHhcCCceEEeccChhhcccccchhHHHHHhhCCEEEecCCCC-CcC-----
Confidence 789999655 22222333332 22334445567777776654321 10 324466899999999953 110
Q ss_pred CCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCccc--ccch-hhhcccCCCC
Q 014368 84 TSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLY--QDIE-KEVSRKCPEN 160 (426)
Q Consensus 84 ~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~--~~~~-~e~g~~~~~~ 160 (426)
...++.+++.+++.++||||||+|||+|++++||++. ++.. .|++.. ..
T Consensus 82 --------------------------~~~~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~--~~ 133 (273)
T 2w7t_A 82 --------------------------VDGKCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKE--ST 133 (273)
T ss_dssp --------------------------HHHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTT--CS
T ss_pred --------------------------chhHHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccc--cC
Confidence 0124578899999999999999999999999999984 3432 344311 00
Q ss_pred cc----eeecccC---CCCCceEEEEEe-cCCcccccccccccccceEEEEecccc-------cchhcc-CCCeEEEEEe
Q 014368 161 QR----VVHIDYD---NYDGHRHVVKVV-KDTPLHDWFKDSLEEEKMEIWVNSYHH-------QGVKRL-AQRFVPMAFA 224 (426)
Q Consensus 161 ~~----v~H~~~~---~~~g~~~~V~v~-~~s~L~~~~~~~~~~~~~~~~Vns~H~-------~~V~~L-p~g~~vlA~s 224 (426)
.+ +.|.... ....++++|.+. ++++++++++. ...|+++|+ +.++.+ |++++++|++
T Consensus 134 ~~~l~~~~~~~~~~~~~~~~g~~~v~~~~~~s~l~~~~~~-------~~~v~~~H~Hsy~v~~~~v~~l~~~g~~v~A~s 206 (273)
T 2w7t_A 134 HQVVRIMDCDRNKMGANMHLGACDVYIVEKSSIMAKIYSK-------SNIVVERHRHRYEVNTAYFEDLRKAGLCISAVT 206 (273)
T ss_dssp CEEEECCGGGBCSSCBCCEEEEEEEEECCTTSHHHHHTTT-------CSEEEEEEEECCEECGGGHHHHHHTTCEEEEES
T ss_pred CCceeeccccccccCCcccccceEEEEecCCcHHHHHhCC-------CceEEeecccccccCHHHHHhhccCCcEEEEEc
Confidence 11 1121100 012358889886 48889888875 234556553 556667 7999999999
Q ss_pred CC----C-eEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 014368 225 PD----G-LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAY 283 (426)
Q Consensus 225 ~d----G-~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~~ 283 (426)
+| | .|+||++++ +++++|||||||++.++.+. .+||++|+++|.++
T Consensus 207 ~d~~~~g~~ieaie~~~------~p~~~GvQfHPE~~~~~~~~-------~~l~~~Fv~~~~~~ 257 (273)
T 2w7t_A 207 DPTFSSRCRVEAVENPS------LRFFLAVQFHPEFISTPMDP-------APTYLSFMAAAAKK 257 (273)
T ss_dssp CTTCCTTCCEEEEECTT------SSSEEEESSCGGGSCBTTBC-------CHHHHHHHHHHHTC
T ss_pred CCcCCCCCeEEEEEcCC------CCeEEEEeCCCCcCCCCCch-------HHHHHHHHHHHHHH
Confidence 88 6 899999986 35678999999999876532 49999999998754
No 16
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.95 E-value=1.5e-27 Score=234.82 Aligned_cols=152 Identities=18% Similarity=0.265 Sum_probs=111.8
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHHhCCccc--ccch-hhhcccCCCCcce-----eecccC---CCCCceEEEEEe
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLY--QDIE-KEVSRKCPENQRV-----VHIDYD---NYDGHRHVVKVV 181 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava~GG~l~--~~~~-~e~g~~~~~~~~v-----~H~~~~---~~~g~~~~V~v~ 181 (426)
+..+++.+++.++||||||+|||+|+.++||++. ++.. .+++.. ...++ .|...+ ....++++|.+.
T Consensus 108 ~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~~~~~~~~~e~~~~--~~~~~i~~~~~h~~~~~~~~~~~g~~~v~~~ 185 (289)
T 2v4u_A 108 KLQAISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPN--APVPLVIDMPEHNPGNLGGTMRLGIRRTVFK 185 (289)
T ss_dssp HHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHSCCTTEEESTTCTT--CSEEEEEECCBCCTTCSSCBCEEEEEEEEES
T ss_pred HHHHHHHHHHcCCcEEEECccHHHHHHHHhccccccccCcccccCcc--ccccceecchhhcccccCCccccceEEEEEe
Confidence 4678899999999999999999999999999985 4432 344311 11111 132110 011246889887
Q ss_pred -cCCcccccccccccccceEEEEecccc-------cchhccC-CCeEEEEEeCCCe-EEEEEeCCCCCCCCCCcEEEEcc
Q 014368 182 -KDTPLHDWFKDSLEEEKMEIWVNSYHH-------QGVKRLA-QRFVPMAFAPDGL-IEGFYDPDAYNPAEGKFIMGLQF 251 (426)
Q Consensus 182 -~~s~L~~~~~~~~~~~~~~~~Vns~H~-------~~V~~Lp-~g~~vlA~s~dG~-Veaie~~~~~~~~~~~~i~GvQF 251 (426)
++++++++++. .+.|+++|+ +.|+.|| ++++++|+++||. ||||++++ +++++||||
T Consensus 186 ~~~s~l~~~~~~-------~~~v~~~H~H~y~vn~~~v~~l~~~g~~v~A~s~dg~~ieaie~~~------~p~~lGvQf 252 (289)
T 2v4u_A 186 TENSILRKLYGD-------VPFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELAN------HPYFVGVQF 252 (289)
T ss_dssp CSCCHHHHHTTS-------CSEEEEEEEECEEECGGGSGGGTTSSEEEEEEETTSCSEEEEEESS------SSCEEEESS
T ss_pred cCCCHHHHhcCC-------CceEEEecccccccCHHHHHhcccCCeEEEEEcCCCCeEEEEEcCC------CCeEEEEEC
Confidence 68899998876 245667765 7888899 9999999999996 99999986 356779999
Q ss_pred cCCccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHh
Q 014368 252 HPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQKK 286 (426)
Q Consensus 252 HPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~~~~~ 286 (426)
|||++.++... .++|++|+++|.++...
T Consensus 253 HPE~~~~~~~~-------~~lf~~Fv~~~~~~~~~ 280 (289)
T 2v4u_A 253 HPEFSSRPMKP-------SPPYLGLLLAATGNLNA 280 (289)
T ss_dssp BGGGGCBTTBC-------CHHHHHHHHHHHTCHHH
T ss_pred CCCCCCCCCch-------HHHHHHHHHHHHhhhhh
Confidence 99999876432 49999999998765443
No 17
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=258.22 Aligned_cols=167 Identities=22% Similarity=0.315 Sum_probs=129.4
Q ss_pred HHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHH
Q 014368 34 HLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIE 113 (426)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e 113 (426)
..+.+++.|+.++++|++.+.+++.. ..+|||||||||+ +.|++...+ ++
T Consensus 45 iar~lre~Gv~~~ivp~~~~~e~i~~--~~~dGIILsGGp~---s~~~~~~~~------------------~~------- 94 (697)
T 2vxo_A 45 IDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPN---SVYAEDAPW------------------FD------- 94 (697)
T ss_dssp HHHHHHHTTCCEEEEETTCCHHHHHH--HTCSEEEEEECC----------CCC------------------CC-------
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHhh--cCCCEEEECCCCC---cccCccchh------------------HH-------
Confidence 56889999999999999887777754 3699999999985 345433211 11
Q ss_pred HHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEecCCccccccccc
Q 014368 114 LRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDS 193 (426)
Q Consensus 114 ~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~~~~ 193 (426)
+.+++.++||||||+|||+|+.++||++.+....++ +++++.+.++++|++.+++
T Consensus 95 ----~~i~~~g~PvLGIC~G~QlLa~~lGG~v~~~~~~e~--------------------G~~~v~~~~~~~Lf~~l~~- 149 (697)
T 2vxo_A 95 ----PAIFTIGKPVLGICYGMQMMNKVFGGTVHKKSVRED--------------------GVFNISVDNTCSLFRGLQK- 149 (697)
T ss_dssp ----GGGTTSSCCEEEEEHHHHHHHHHTTCCBCC---------------------------CEEEEECTTSGGGTTCCS-
T ss_pred ----HHHHhCCCCEEEECHHHHHHHHHhCCeEeecCCCcc--------------------ceEEEEecCCChhhhcCCc-
Confidence 112357899999999999999999999987543333 2678888888899988876
Q ss_pred ccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHH
Q 014368 194 LEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAY 273 (426)
Q Consensus 194 ~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf 273 (426)
.+.|+.+|++.|+.+|++|+++|+++ +.|+|+++++ .+++|+|||||.+.++.+ ..+|
T Consensus 150 ------~~~v~~~H~~~V~~lp~g~~vlA~s~-~~i~ai~~~~-------~~i~GvQFHPE~~~t~~g--------~~ll 207 (697)
T 2vxo_A 150 ------EEVVLLTHGDSVDKVADGFKVVARSG-NIVAGIANES-------KKLYGAQFHPEVGLTENG--------KVIL 207 (697)
T ss_dssp ------EEEECCCSSCCBSSCCTTCEEEEEET-TEEEEEEETT-------TTEEEESSCTTSSSSTTH--------HHHH
T ss_pred ------cCcceeecccceecCCCCeEEEEEeC-CceEEEEeCC-------CCEEEEEecccCCCCccc--------hhhh
Confidence 56899999999999999999999995 4999999986 789999999999987765 5899
Q ss_pred HHHH
Q 014368 274 QEFV 277 (426)
Q Consensus 274 ~~Fv 277 (426)
++|+
T Consensus 208 ~nFl 211 (697)
T 2vxo_A 208 KNFL 211 (697)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 9998
No 18
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.95 E-value=2.5e-27 Score=250.84 Aligned_cols=226 Identities=22% Similarity=0.283 Sum_probs=151.2
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh---hhhhhhcCCCCEEEECCCCCCCCCcccccCCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV---HMLLDSFEPIHGVLLCEGEDIDPSLYEAETSN 86 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~---~~l~~~le~~DGVILsGG~didp~~y~~~~~~ 86 (426)
.+.|+++..+..-...+.+ +.+....+....|+.+.+++.+.+. +.+.+.++.+||||||||++ +|..
T Consensus 300 ~v~I~ivgkyv~l~D~y~S-v~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L~~~DGIILpGGfG-d~~~------- 370 (550)
T 1vco_A 300 TVKIAIAGKYVKMPDAYLS-LLEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFG-VRGI------- 370 (550)
T ss_dssp EEEEEEEESCC---CTTHH-HHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCS-STTH-------
T ss_pred ceEEcccCCeEEEEecHHH-HHHHHHHHHHHcCCeEEEEEeCccccccchHHHHHhcCCEEEECCCCC-Ccch-------
Confidence 3667776654322222222 2233444555667788877654321 22445567899999999964 2210
Q ss_pred CChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCccccc--c-hhhhcccCCCCcce
Q 014368 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQD--I-EKEVSRKCPENQRV 163 (426)
Q Consensus 87 ~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~--~-~~e~g~~~~~~~~v 163 (426)
..++.++++++++++|+||||+|||+|++++||+++.. . ..|++.. ..+++
T Consensus 371 ------------------------~g~i~~ir~a~e~~iPiLGICLGmQlL~~a~Gg~v~~l~~~~s~E~~~~--~~hpv 424 (550)
T 1vco_A 371 ------------------------EGKVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPH--TPHPV 424 (550)
T ss_dssp ------------------------HHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTT--CSCEE
T ss_pred ------------------------hhhHHHHHHHHHCCCcEEEECcCHHHHHHHhCcccccCCccccccccCC--CCCCe
Confidence 12357889999999999999999999999999998753 2 2344311 11222
Q ss_pred ee-ccc--------CCCCCceEEEEEecCCccccccccccc--ccceEEEEecccccchhccCCCeEEEEEeCCC-----
Q 014368 164 VH-IDY--------DNYDGHRHVVKVVKDTPLHDWFKDSLE--EEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDG----- 227 (426)
Q Consensus 164 ~H-~~~--------~~~~g~~~~V~v~~~s~L~~~~~~~~~--~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG----- 227 (426)
.+ +.. .....++++|.+.+++.+..+++...+ ...|.|.||++|++.+. +.+++++|+++||
T Consensus 425 i~~~~~q~~i~~~ggtmrlG~~~v~i~~~s~l~~iy~~~~v~e~h~H~Y~Vns~~~~~l~--~~gl~v~a~s~dG~g~~~ 502 (550)
T 1vco_A 425 IDLMPEQLEVEGLGGTMRLGDWPMRIKPGTLLHRLYGKEEVLERHRHRYEVNPLYVDGLE--RAGLVVSATTPGMRGRGA 502 (550)
T ss_dssp EEESCGGGCC---CCCCEEEEEEEEECTTSHHHHHHCCSEEEEEEEESEEECHHHHHHHH--HHTEEEEEECCCBTTBST
T ss_pred EEeccccccccccCCcccccceEEEEccCchhhHhcCCceeeeeccceEEEchHHhhccc--cCCeEEEEEeCCCCccCC
Confidence 21 110 011125789999888888888876433 22477899999988775 2689999999885
Q ss_pred -eEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHHHHHH
Q 014368 228 -LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQK 285 (426)
Q Consensus 228 -~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~~~~ 285 (426)
.||+|++++ +++++|||||||+..++... .+||++|++++.++++
T Consensus 503 ~~VeaIe~~~------~p~fvGVQFHPE~~~~p~~g-------~~LF~~Fv~aa~~~~~ 548 (550)
T 1vco_A 503 GLVEAIELKD------HPFFLGLQSHPEFKSRPMRP-------SPPFVGFVEAALAYQE 548 (550)
T ss_dssp TCEEEEEETT------SSSEEEESSCGGGGCBTTBC-------CHHHHHHHHHHHHHTC
T ss_pred CcEEEEEeCC------CCEEEEEEeCCccCCCCCCh-------HHHHHHHHHHHHhhcc
Confidence 999999986 34455999999999987533 4999999999987653
No 19
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.94 E-value=4.4e-27 Score=248.72 Aligned_cols=220 Identities=19% Similarity=0.241 Sum_probs=151.4
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCC----EEEEEcCCCChhhh----hhhcCCCCEEEECCCCCCCCCcccc
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA----VPAIVPRVSGVHML----LDSFEPIHGVLLCEGEDIDPSLYEA 82 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga----~~vivp~~~~~~~l----~~~le~~DGVILsGG~didp~~y~~ 82 (426)
+.|+++..+.. +.| .-.+++++|..+|+ .+++++.+ .+++ .+.+..+||||||||++ +|..
T Consensus 290 v~i~~vGkyv~----l~D-~y~Si~~aL~~~G~~~~~~V~i~~~d--~e~i~~~~~~~l~~~DGIilsGGpg-~~~~--- 358 (545)
T 1s1m_A 290 VTIGMVGKYIE----LPD-AYKSVIEALKHGGLKNRVSVNIKLID--SQDVETRGVEILKGLDAILVPGGFG-YRGV--- 358 (545)
T ss_dssp EEEEEEESSCS----SGG-GGHHHHHHHHHHHHHHTEEEEEEEEE--HHHHHHHCTTTTTTCSEEEECCCCS-STTH---
T ss_pred EEeCCcCCeEE----EEE-HHHHHHHHHHHhCcccCCeEEEccCC--HHHhhhhhhhhhhcCCEEEECCCCC-Cccc---
Confidence 56666554321 122 12446788888775 33444432 2233 24467899999999974 2210
Q ss_pred cCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCccccc--c-hhhhcccCCC
Q 014368 83 ETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQD--I-EKEVSRKCPE 159 (426)
Q Consensus 83 ~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~--~-~~e~g~~~~~ 159 (426)
..++.++++++++++|+||||+|||+|++++||+++.. . ..|++.. .
T Consensus 359 ----------------------------~g~~~~i~~a~~~~~PiLGIClG~Qll~va~Gg~v~~l~~a~s~E~~~~--~ 408 (545)
T 1s1m_A 359 ----------------------------EGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPD--C 408 (545)
T ss_dssp ----------------------------HHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSS--C
T ss_pred ----------------------------hhhHHHHHHHHHCCCcEEEECChHHHHHHHhCCceecCCCCcccccCCC--C
Confidence 12357889999999999999999999999999998743 2 2344321 1
Q ss_pred Ccceeecc--cC--------C---------CCCceEEEEEecCCcccccccccccc--cceEEEEecccccchhccCCCe
Q 014368 160 NQRVVHID--YD--------N---------YDGHRHVVKVVKDTPLHDWFKDSLEE--EKMEIWVNSYHHQGVKRLAQRF 218 (426)
Q Consensus 160 ~~~v~H~~--~~--------~---------~~g~~~~V~v~~~s~L~~~~~~~~~~--~~~~~~Vns~H~~~V~~Lp~g~ 218 (426)
.+++.+.. |. + ...+++++.+.+++.+..+++...+. ..+.|.||+.|++.+. +.++
T Consensus 409 ~hpvi~l~~~w~~~~g~~~~q~~~~~~ggtmrlG~~~v~l~~~s~l~~iyg~~~v~e~h~Hry~VNs~~~~~l~--~~gl 486 (545)
T 1s1m_A 409 KYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIE--DAGL 486 (545)
T ss_dssp SCEEEECTTTCCCTTSCCC----------CCEEEEEEEEECTTCHHHHHTTSSEEEEEEEECCEECHHHHHHHH--HTTC
T ss_pred CCceEEeecccccccccccccccccccCccccccceeeEeccCCHHHHhcCCceEEEecCcceEEChHHhhhcc--cCCe
Confidence 22332211 11 0 11257889999999998888764322 2466788888888775 4799
Q ss_pred EEEEEeCCC-eEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHh
Q 014368 219 VPMAFAPDG-LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQKK 286 (426)
Q Consensus 219 ~vlA~s~dG-~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~~~~~ 286 (426)
+++|+++|| .||++++++ +++++|||||||+..++.+. .+||++|++++.+++++
T Consensus 487 ~v~a~s~dg~~VEaie~~~------~p~flGVQFHPE~~~~p~~g-------~~LF~~Fv~aa~~~~~~ 542 (545)
T 1s1m_A 487 RVAGRSGDDQLVEIIEVPN------HPWFVACQFHPEFTSTPRDG-------HPLFAGFVKAASEFQKR 542 (545)
T ss_dssp EEEEECSSSCCEEEEECTT------SSSEEEESSCGGGTCCTTTC-------CHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCceEEEEeCC------CCEEEEEeCCCCCCCCCCCh-------HHHHHHHHHHHHHHHhh
Confidence 999999998 899999987 35666999999999987643 49999999999887754
No 20
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.94 E-value=3.4e-26 Score=218.31 Aligned_cols=178 Identities=16% Similarity=0.168 Sum_probs=134.2
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCc-ccccCCCCChhHHHHHHhhcCCCccccchhhH
Q 014368 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSL-YEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (426)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~-y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~ 111 (426)
.+.+++...|+.+.+++.... +.+.+.++.+|||||+||+. +|.. +++.+ |+ +..
T Consensus 16 ~~~~~l~~~g~~~~~~~~~~~-~~~p~~~~~~d~lii~GGp~-~~~~~~~~~~---------~~-------------~~~ 71 (236)
T 3l7n_A 16 AYLAWAALRGHDVSMTKVYRY-EKLPKDIDDFDMLILMGGPQ-SPSSTKKEFP---------YY-------------DAQ 71 (236)
T ss_dssp HHHHHHHHTTCEEEEEEGGGT-CCCCSCGGGCSEEEECCCSS-CTTCCTTTCT---------TC-------------CHH
T ss_pred HHHHHHHHCCCeEEEEeeeCC-CCCCCCccccCEEEECCCCC-CcccccccCc---------cc-------------chH
Confidence 456788999999988875332 22333356799999999985 2321 11111 11 112
Q ss_pred HHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEec---CCcccc
Q 014368 112 IELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVK---DTPLHD 188 (426)
Q Consensus 112 ~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~---~s~L~~ 188 (426)
.+..+++.+++.++||||||+|||+|+.++||++.+....++ ++++|.+.. .++++.
T Consensus 72 ~~~~~i~~~~~~~~PvLGIClG~QlL~~~~Gg~v~~~~~~~~--------------------G~~~v~~~~~~~~~~l~~ 131 (236)
T 3l7n_A 72 AEVKLIQKAAKSEKIIVGVCLGAQLMGVAYGADYLHSPKKEI--------------------GNYLISLTEAGKMDSYLS 131 (236)
T ss_dssp HHHHHHHHHHHTTCEEEEETHHHHHHHHHTTCCCEEEEEEEE--------------------EEEEEEECTTGGGCGGGT
T ss_pred HHHHHHHHHHHcCCCEEEEchHHHHHHHHhCCEEecCCCcee--------------------eeEEEEEccCcccChHHh
Confidence 346789999999999999999999999999999887643233 367888876 467888
Q ss_pred cccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCC
Q 014368 189 WFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPG 268 (426)
Q Consensus 189 ~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~ 268 (426)
.++. .+.++++|++. ..+|++++++|++++|.++|++++ .+++|+|||||++
T Consensus 132 ~~~~-------~~~v~~~H~~~-~~lp~~~~vla~s~~~~~~a~~~~--------~~v~gvQfHPE~~------------ 183 (236)
T 3l7n_A 132 DFSD-------DLLVGHWHGDM-PGLPDKAQVLAISQGCPRQIIKFG--------PKQYAFQCHLEFT------------ 183 (236)
T ss_dssp TSCS-------EEEEEEEEEEE-CCCCTTCEEEEECSSCSCSEEEEE--------TTEEEESSBSSCC------------
T ss_pred cCCC-------CcEEEEecCCc-ccCCChheEEEECCCCCEEEEEEC--------CCEEEEEeCCCCC------------
Confidence 7776 67889999987 568999999999999999999986 4799999999985
Q ss_pred cHHHHHHHHHHHHHH
Q 014368 269 CPSAYQEFVKAVIAY 283 (426)
Q Consensus 269 ~~~lf~~Fv~av~~~ 283 (426)
..++++|++.+..+
T Consensus 184 -~~~~~~~~~~~~~~ 197 (236)
T 3l7n_A 184 -PELVAALIAQEDDL 197 (236)
T ss_dssp -HHHHHHHHHHCSCH
T ss_pred -HHHHHHHHHhhhhh
Confidence 26889998876543
No 21
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.94 E-value=2.9e-26 Score=247.55 Aligned_cols=190 Identities=16% Similarity=0.182 Sum_probs=141.5
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChh
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e 90 (426)
++|+|+++.+.+ ...+.+++...|+.+++++++.+.+ +..+|||||+||++ +|... ..
T Consensus 447 k~IlviD~gdsf--------~~~l~~~l~~~G~~v~Vv~~d~~~~-----~~~~DgIIlsGGPg-~p~d~--~~------ 504 (645)
T 3r75_A 447 CRALIVDAEDHF--------TAMIAQQLSSLGLATEVCGVHDAVD-----LARYDVVVMGPGPG-DPSDA--GD------ 504 (645)
T ss_dssp CEEEEEESSCTH--------HHHHHHHHHHTTCEEEEEETTCCCC-----GGGCSEEEECCCSS-CTTCT--TS------
T ss_pred CEEEEEECCccH--------HHHHHHHHHHCCCEEEEEECCCccc-----ccCCCEEEECCCCC-Chhhh--hh------
Confidence 478888877553 3456778899999999999876432 24689999999975 33211 10
Q ss_pred HHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCC
Q 014368 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDN 170 (426)
Q Consensus 91 ~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (426)
.|+. .+..+++.+++.++||||||+|||+|+.++||++.+......
T Consensus 505 --p~i~---------------~~~~lI~~a~~~~iPiLGIClG~QlLa~alGG~V~~~~~~~~----------------- 550 (645)
T 3r75_A 505 --PRIA---------------RLYAWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRREVPNQ----------------- 550 (645)
T ss_dssp --HHHH---------------HHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEEEEEE-----------------
T ss_pred --hhHH---------------HHHHHHHHHHHCCCCEEEECHHHHHHHHHhCCEEEcCCCccc-----------------
Confidence 1221 235788999999999999999999999999999987532111
Q ss_pred CCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEc
Q 014368 171 YDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQ 250 (426)
Q Consensus 171 ~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQ 250 (426)
|..+.+.+. +++++..+.. .+.++++|.+.+..+|++++++|+++||.|++|++++ ++|||
T Consensus 551 --G~~~~i~~~-~~~l~~~~~~-------~~~v~~~h~~~~~~lp~g~~v~A~s~dg~i~Ai~~~~---------~~GVQ 611 (645)
T 3r75_A 551 --GIQVEIDLF-GQRERVGFYN-------TYVAQTVRDEMDVDGVGTVAISRDPRTGEVHALRGPT---------FSSMQ 611 (645)
T ss_dssp --EEEEEEEET-TEEEEEEEEE-------EEEEBCSCSEEEETTTEEEEEEECTTTCBEEEEEETT---------EEEES
T ss_pred --ccceEEeee-cCcceecCCC-------cEEEEEehhhccccCCCCeEEEEEcCCCcEEEEEcCC---------EEEEE
Confidence 224555543 4445544433 6778888877776799999999999999999999863 79999
Q ss_pred ccCCccCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 014368 251 FHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAY 283 (426)
Q Consensus 251 FHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~~ 283 (426)
||||+..++.+ .+||++|++.+...
T Consensus 612 FHPE~~~t~~G--------~~Ll~nFl~~~~~~ 636 (645)
T 3r75_A 612 FHAESVLTVDG--------PRILGEAITHAIRR 636 (645)
T ss_dssp SBTTSTTCTTH--------HHHHHHHHHHHTTT
T ss_pred eCCeecCCcch--------HHHHHHHHHHHHhc
Confidence 99999887665 69999999988643
No 22
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.94 E-value=9.8e-26 Score=210.06 Aligned_cols=200 Identities=19% Similarity=0.183 Sum_probs=136.8
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
+++|+|+....... ...+++++..+|+.+++++... .++.+||||||||++.... ...
T Consensus 2 ~~~i~il~~~~~~~-------~~~~~~~l~~~g~~~~~~~~~~-------~~~~~d~lil~Gg~~~~~~-~~~------- 59 (213)
T 3d54_D 2 KPRACVVVYPGSNC-------DRDAYHALEINGFEPSYVGLDD-------KLDDYELIILPGGFSYGDY-LRP------- 59 (213)
T ss_dssp CCEEEEECCTTEEE-------HHHHHHHHHTTTCEEEEECTTC-------CCSSCSEEEECEECGGGGC-SST-------
T ss_pred CcEEEEEEcCCCCc-------cHHHHHHHHHCCCEEEEEecCC-------CcccCCEEEECCCCchhhh-hcc-------
Confidence 57899987653211 1245888999999999998541 2457999999999642111 000
Q ss_pred hHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH--hCCcccccchhhhcccCCCCcceeecc
Q 014368 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA--CGGTLYQDIEKEVSRKCPENQRVVHID 167 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava--~GG~l~~~~~~e~g~~~~~~~~v~H~~ 167 (426)
+.+ .++..+..+++.+.++++||||||+|+|+|+.+ ++|++.+... + + .|
T Consensus 60 ~~~---------------~~~~~~~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~v~~~~~---~-------~-~~-- 111 (213)
T 3d54_D 60 GAV---------------AAREKIAFEIAKAAERGKLIMGICNGFQILIEMGLLKGALLQNSS---G-------K-FI-- 111 (213)
T ss_dssp THH---------------HHTSTTHHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSEEECCSS---S-------S-CB--
T ss_pred ccc---------------cccHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCCeecCCC---C-------c-eE--
Confidence 000 011223578888888999999999999999999 8887654321 0 0 12
Q ss_pred cCCCCCceEEEEEe-cCCcccccccccccccceEEEEeccccc---chhccCCCeEEEEEeCC--C---eEEEEEeCCCC
Q 014368 168 YDNYDGHRHVVKVV-KDTPLHDWFKDSLEEEKMEIWVNSYHHQ---GVKRLAQRFVPMAFAPD--G---LIEGFYDPDAY 238 (426)
Q Consensus 168 ~~~~~g~~~~V~v~-~~s~L~~~~~~~~~~~~~~~~Vns~H~~---~V~~Lp~g~~vlA~s~d--G---~Veaie~~~~~ 238 (426)
.+++.|++. +++++++.+++. ..+.++++|++ .+. |+++.++|+++| | .|+|+++++
T Consensus 112 -----~g~~~v~~~~~~~~l~~~~~~~-----~~~~~~~~H~~~s~~~~--~~~~~~~a~~~~~ng~~~~i~a~~~~~-- 177 (213)
T 3d54_D 112 -----CKWVDLIVENNDTPFTNAFEKG-----EKIRIPIAHGFGRYVKI--DDVNVVLRYVKDVNGSDERIAGVLNES-- 177 (213)
T ss_dssp -----CCEEEEEECCCSSTTSTTSCTT-----CEEEEECCBSSCEEECS--SCCEEEEEESSCSSCCGGGEEEEECSS--
T ss_pred -----eeeEEEEeCCCCCceeeccCCC-----CEEEEEeecCceEEEec--CCCcEEEEEcCCCCCCccceeEEEcCC--
Confidence 247888887 678888877641 25777888954 342 478999999876 4 899999864
Q ss_pred CCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014368 239 NPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 239 ~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
.+++|+|||||++...... .+...+||++|+++|.
T Consensus 178 -----~~~~gvQfHPE~~~~~~~~---~~~g~~l~~~f~~~~~ 212 (213)
T 3d54_D 178 -----GNVFGLMPHPERAVEELIG---GEDGKKVFQSILNYLK 212 (213)
T ss_dssp -----SCEEEECSCSTTTTSTTTT---CSTTSHHHHHHHHHCC
T ss_pred -----CCEEEEeCCHHHhcCHhhh---cCccHHHHHHHHHHhh
Confidence 7899999999998732100 0012599999998763
No 23
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=99.93 E-value=1e-25 Score=217.66 Aligned_cols=161 Identities=17% Similarity=0.152 Sum_probs=121.5
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhH
Q 014368 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (426)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~ 111 (426)
.++.+++...|..+.++....+ +.+...++.+|||||+||+. + .|++.+ |+ .
T Consensus 18 ~~i~~~l~~~G~~v~v~~~~~~-~~~p~~~~~~d~lIl~GGp~-~--~~d~~~---------~~---------------~ 69 (250)
T 3m3p_A 18 GHFGDFLAGEHIPFQVLRMDRS-DPLPAEIRDCSGLAMMGGPM-S--ANDDLP---------WM---------------P 69 (250)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGT-CCCCSCGGGSSEEEECCCSS-C--TTSCCT---------TH---------------H
T ss_pred HHHHHHHHHCCCeEEEEeccCC-CcCcCccccCCEEEECCCCC-c--ccccch---------HH---------------H
Confidence 3456778999999988875322 11233345799999999974 1 232211 11 1
Q ss_pred HHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCCCCceEEEEEecC---Ccccc
Q 014368 112 IELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKD---TPLHD 188 (426)
Q Consensus 112 ~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~~~---s~L~~ 188 (426)
.+..+++.+++.++||||||+|+|+|+.++||+|++....++ ++++|.+.++ ++++
T Consensus 70 ~~~~~i~~~~~~~~PvlGIC~G~Qll~~~lGG~V~~~~~~e~--------------------G~~~v~~~~~~~~~~l~- 128 (250)
T 3m3p_A 70 TLLALIRDAVAQRVPVIGHCLGGQLLAKAMGGEVTDSPHAEI--------------------GWVRAWPQHVPQALEWL- 128 (250)
T ss_dssp HHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEEEEEE--------------------EEEEEEECSSHHHHHHH-
T ss_pred HHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCEEEeCCCCce--------------------eeEEEEEecCCCCcccc-
Confidence 246788998999999999999999999999999998753333 2677888654 4555
Q ss_pred cccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcccCCccC
Q 014368 189 WFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMR 257 (426)
Q Consensus 189 ~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~ 257 (426)
.+++ .+.|+++|++.| .+|++++++|++++|.++||++++ +++|+|||||++.
T Consensus 129 g~~~-------~~~v~~~H~~~v-~lp~~~~vlA~s~~~~~~a~~~~~--------~~~GvQfHPE~~~ 181 (250)
T 3m3p_A 129 GTWD-------ELELFEWHYQTF-SIPPGAVHILRSEHCANQAYVLDD--------LHIGFQCHIEMQA 181 (250)
T ss_dssp SCSS-------CEEEEEEEEEEE-CCCTTEEEEEEETTEEEEEEEETT--------TEEEESSCTTCCH
T ss_pred cCCC-------ccEEEEEcccee-ecCCCCEEEEEeCCCCEEEEEECC--------eeEEEEeCCcCCH
Confidence 3444 578999999999 799999999999999999999974 5999999999853
No 24
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=7.5e-26 Score=207.48 Aligned_cols=182 Identities=20% Similarity=0.232 Sum_probs=119.1
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhH
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~ 91 (426)
+|+|++..+. + .+|+++++++|+.+++++. .+ .++.+||||||||++ +.|++
T Consensus 2 ~i~vl~~~g~----~-----~~~~~~l~~~G~~~~~~~~---~~----~~~~~dglil~GG~~---~~~~~--------- 53 (186)
T 2ywj_A 2 IIGVLAIQGD----V-----EEHEEAIKKAGYEAKKVKR---VE----DLEGIDALIIPGGES---TAIGK--------- 53 (186)
T ss_dssp EEEEECSSSC----C-----HHHHHHHHHTTSEEEEECS---GG----GGTTCSEEEECCSCH---HHHHH---------
T ss_pred EEEEEecCcc----h-----HHHHHHHHHCCCEEEEECC---hH----HhccCCEEEECCCCc---hhhhh---------
Confidence 6888875422 2 2367899999999999874 22 245689999999964 22221
Q ss_pred HHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCCC
Q 014368 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNY 171 (426)
Q Consensus 92 ~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (426)
+. +.++.. +.++ +.++||||||+|||+|+.++||++ +. ++. .+..+.+... .+
T Consensus 54 ~~-------------~~~~~~--~~i~---~~~~PilGIC~G~Qll~~~~gg~~-~~----lg~---~~~~~~~~~~-~~ 106 (186)
T 2ywj_A 54 LM-------------KKYGLL--EKIK---NSNLPILGTCAGMVLLSKGTGINQ-IL----LEL---MDITVKRNAY-GR 106 (186)
T ss_dssp HH-------------HHTTHH--HHHH---TCCCCEEEETHHHHHHSSCCSSCC-CC----CCC---SSEEEETTTT-CS
T ss_pred hh-------------hccCHH--HHHH---hcCCcEEEECHHHHHHHHHhCCCc-Cc----cCC---CceeEEeccC-CC
Confidence 00 111221 2233 789999999999999999999984 22 220 0011111110 00
Q ss_pred CCceEEEEEecCCcccccccccccccceEEEEecccccchhcc-CCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEc
Q 014368 172 DGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRL-AQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQ 250 (426)
Q Consensus 172 ~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~L-p~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQ 250 (426)
....+... .++..+ . .+.++++|++.|+.+ |++++++|++ |+.++|++++ +++|+|
T Consensus 107 ~~~~~~~~-----~~~~~~-~-------~~~~~~~H~~~v~~l~~~~~~v~a~s-d~~~~a~~~~---------~~~gvQ 163 (186)
T 2ywj_A 107 QVDSFEKE-----IEFKDL-G-------KVYGVFIRAPVVDKILSDDVEVIARD-GDKIVGVKQG---------KYMALS 163 (186)
T ss_dssp SSCCEEEE-----EEETTT-E-------EEEEEESSCCEEEEECCTTCEEEEEE-TTEEEEEEET---------TEEEES
T ss_pred cccceecc-----cccccC-C-------cEEEEEEecceeeecCCCCeEEEEEE-CCEEEEEeeC---------CEEEEE
Confidence 00112111 111112 2 577889999999889 9999999999 8999999973 699999
Q ss_pred ccCCccCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014368 251 FHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 251 FHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
||||.+.. + .++|++|+++|.
T Consensus 164 fHPE~~~~--g--------~~l~~~F~~~~~ 184 (186)
T 2ywj_A 164 FHPELSED--G--------YKVYKYFVENCV 184 (186)
T ss_dssp SCGGGSTT--H--------HHHHHHHHHHHT
T ss_pred CCCCcCCc--h--------hHHHHHHHHHHh
Confidence 99998652 2 599999999874
No 25
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.93 E-value=2.4e-25 Score=210.00 Aligned_cols=191 Identities=16% Similarity=0.143 Sum_probs=128.0
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
+++|+|+.... . | ..++++++.+|+.+++++.. ++ ++.+||||||||++ ..+++
T Consensus 23 ~~~I~il~~~~----~---~--~~~~~~l~~~G~~~~~~~~~---~~----l~~~Dglil~GG~~---~~~~~------- 76 (219)
T 1q7r_A 23 NMKIGVLGLQG----A---V--REHVRAIEACGAEAVIVKKS---EQ----LEGLDGLVLPGGES---TTMRR------- 76 (219)
T ss_dssp CCEEEEESCGG----G---C--HHHHHHHHHTTCEEEEECSG---GG----GTTCSEEEECCCCH---HHHHH-------
T ss_pred CCEEEEEeCCC----C---c--HHHHHHHHHCCCEEEEECCH---HH----HhhCCEEEECCCCh---HHHHH-------
Confidence 47899996432 1 1 23678999999999998852 22 45799999999963 11110
Q ss_pred hHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccC
Q 014368 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (426)
+. ++..+..+++.+.+.++||||||+|||+|+.++||++.++.. .+. ..+.+....
T Consensus 77 --~~---------------~~~~~~~~i~~~~~~~~PilGIC~G~QlL~~~~gg~~~~~lg-~~~------~~~~~~~~g 132 (219)
T 1q7r_A 77 --LI---------------DRYGLMEPLKQFAAAGKPMFGTCAGLILLAKRIVGYDEPHLG-LMD------ITVERNSFG 132 (219)
T ss_dssp --HH---------------HHTTCHHHHHHHHHTTCCEEEETTHHHHHEEEEESSCCCCCC-CEE------EEEECHHHH
T ss_pred --Hh---------------hhhHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCCCcCCcC-ccc------eEEEecCCC
Confidence 11 112235788899999999999999999999999998755431 010 001110000
Q ss_pred CCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEE
Q 014368 170 NYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGL 249 (426)
Q Consensus 170 ~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~Gv 249 (426)
+....+...+ .+..++. .+.+..+|++.|+.+|++++++|++ ||.++|++++ +++|+
T Consensus 133 -~~~~~~~~~~-----~~~g~g~-------~~~~~~~h~~~v~~l~~~~~v~a~s-dg~~ea~~~~---------~i~Gv 189 (219)
T 1q7r_A 133 -RQRESFEAEL-----SIKGVGD-------GFVGVFIRAPHIVEAGDGVDVLATY-NDRIVAARQG---------QFLGC 189 (219)
T ss_dssp -CCCCCEEEEE-----EETTTEE-------EEEEEESSCCEEEEECTTCEEEEEE-TTEEEEEEET---------TEEEE
T ss_pred -ccccceecCc-----ccCCCCC-------ceEEEEEecceeeccCCCcEEEEEc-CCEEEEEEEC---------CEEEE
Confidence 0001111111 1111232 5677788999998899999999999 8999999973 69999
Q ss_pred cccCCccCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 014368 250 QFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQ 284 (426)
Q Consensus 250 QFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~~~ 284 (426)
|||||.+.. ..+|++|+++|.+++
T Consensus 190 QfHPE~~~~-----------~~l~~~fl~~~~~~~ 213 (219)
T 1q7r_A 190 SFHPELTDD-----------HRLMQYFLNMVKEAK 213 (219)
T ss_dssp SSCGGGSSC-----------CHHHHHHHHHHHHHH
T ss_pred EECcccCCC-----------HHHHHHHHHHHHHhh
Confidence 999998642 289999999987654
No 26
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.92 E-value=3.7e-25 Score=203.01 Aligned_cols=188 Identities=13% Similarity=0.105 Sum_probs=122.8
Q ss_pred CCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCC
Q 014368 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLS 88 (426)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~ 88 (426)
++|+|||++.... ...|+++++++|+.+++++.. +. ++.+|||||+||+ +..+
T Consensus 1 ~~p~Igi~~~~~~---------~~~~~~~l~~~G~~~~~~~~~---~~----l~~~dglil~GG~---~~~~-------- 53 (191)
T 2ywd_A 1 MRGVVGVLALQGD---------FREHKEALKRLGIEAKEVRKK---EH----LEGLKALIVPGGE---STTI-------- 53 (191)
T ss_dssp --CCEEEECSSSC---------HHHHHHHHHTTTCCCEEECSG---GG----GTTCSEEEECSSC---HHHH--------
T ss_pred CCcEEEEEecCCc---------hHHHHHHHHHCCCEEEEeCCh---hh----hccCCEEEECCCC---hhhh--------
Confidence 3799999986421 135899999999999998742 22 3569999999994 1111
Q ss_pred hhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcC-CCEEEEehHHHHHHHHhCC-cccccchhhhcccCCCCcceeec
Q 014368 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERN-IPYLGICRGSQVLNVACGG-TLYQDIEKEVSRKCPENQRVVHI 166 (426)
Q Consensus 89 ~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~-iPILGIClG~QlLava~GG-~l~~~~~~e~g~~~~~~~~v~H~ 166 (426)
++++ ++.....+++.+.+.+ +||||||+|||+|+.++|| +++++.. .+. ..+.+.
T Consensus 54 ----~~~~------------~~~~~~~~i~~~~~~~~~PilGiC~G~Q~l~~~~gg~~~~~~lg-~~~------~~~~~~ 110 (191)
T 2ywd_A 54 ----GKLA------------REYGIEDEVRKRVEEGSLALFGTCAGAIWLAKEIVGYPEQPRLG-VLE------AWVERN 110 (191)
T ss_dssp ----HHHH------------HHTTHHHHHHHHHHTTCCEEEEETHHHHHHEEEETTCTTCCCCC-CEE------EEEETT
T ss_pred ----HHhh------------hhhhHHHHHHHHHHCCCCeEEEECHHHHHHHHHhCCCCCCcccc-ccc------eEEEcC
Confidence 1111 0111356888888889 9999999999999999998 7655431 110 011111
Q ss_pred ccCCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcE
Q 014368 167 DYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFI 246 (426)
Q Consensus 167 ~~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i 246 (426)
... .....+...+ .+..+ . .+.+..+|++.++.+|++++++|++ |+.++|++++ ++
T Consensus 111 ~~g-~~~~~~~~~~-----~~~~~-~-------~~~~~~~Hs~~v~~l~~~~~~~a~~-~~~~~a~~~~---------~~ 166 (191)
T 2ywd_A 111 AFG-RQVESFEEDL-----EVEGL-G-------SFHGVFIRAPVFRRLGEGVEVLARL-GDLPVLVRQG---------KV 166 (191)
T ss_dssp CSC-CSSSEEEEEE-----EETTT-E-------EEEEEEESCCEEEEECTTCEEEEEE-TTEEEEEEET---------TE
T ss_pred CcC-Cccccccccc-----cccCC-C-------ceeEEEEcccceeccCCCcEEEEEE-CCEEEEEEEC---------CE
Confidence 000 0011111111 11111 1 4556667888787788999999999 6999999985 39
Q ss_pred EEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHH
Q 014368 247 MGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (426)
Q Consensus 247 ~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~ 281 (426)
+|+|||||.+.. ..+|++|+++|.
T Consensus 167 ~gvQfHPE~~~~-----------~~l~~~f~~~~~ 190 (191)
T 2ywd_A 167 LASSFHPELTED-----------PRLHRYFLELAG 190 (191)
T ss_dssp EEESSCGGGSSC-----------CHHHHHHHHHHT
T ss_pred EEEEeCCCCCCC-----------cHHHHHHHHHhc
Confidence 999999997642 189999998873
No 27
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.92 E-value=1.6e-24 Score=200.16 Aligned_cols=192 Identities=17% Similarity=0.204 Sum_probs=123.7
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChh
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e 90 (426)
.+|+|+...+ .+ ..++++++++|+.+++++. .++ ++.+||||||||+ +..|++
T Consensus 2 m~I~il~~~~----~~-----~~~~~~l~~~g~~~~~~~~---~~~----l~~~d~iil~GG~---~~~~~~-------- 54 (196)
T 2nv0_A 2 LTIGVLGLQG----AV-----REHIHAIEACGAAGLVVKR---PEQ----LNEVDGLILPGGE---STTMRR-------- 54 (196)
T ss_dssp CEEEEECSSS----CC-----HHHHHHHHHTTCEEEEECS---GGG----GGGCSEEEECCSC---HHHHHH--------
T ss_pred cEEEEEEccC----Cc-----HHHHHHHHHCCCEEEEeCC---hHH----HhhCCEEEECCCC---hhhHHH--------
Confidence 4788887421 22 2346889999999998874 222 3469999999995 222221
Q ss_pred HHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCC
Q 014368 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDN 170 (426)
Q Consensus 91 ~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (426)
+.|. .....+++.+.++++|+||||+|+|+|+.++||++++.. |- . +..+.+.. ..
T Consensus 55 -~~~~---------------~~~~~~i~~~~~~~~pilgIC~G~q~l~~~~gg~~~~~l----g~-~--~~~~~~~~-~g 110 (196)
T 2nv0_A 55 -LIDT---------------YQFMEPLREFAAQGKPMFGTCAGLIILAKEIAGSDNPHL----GL-L--NVVVERNS-FG 110 (196)
T ss_dssp -HHHH---------------TTCHHHHHHHHHTTCCEEEETHHHHHHSBCCC----CCC----CC-S--CEEEECCC-SC
T ss_pred -Hhhh---------------HHHHHHHHHHHHCCCcEEEECHHHHHHHHHhcCCCCCcc----cC-C--ceeEeccC-CC
Confidence 1010 111467888889999999999999999999999875533 10 0 00111100 00
Q ss_pred CCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEc
Q 014368 171 YDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQ 250 (426)
Q Consensus 171 ~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQ 250 (426)
+.... + ..+..+ ..++. .+.++++|++.++.+|++++++|++ |+.++|++++ +++|+|
T Consensus 111 ~~~~~--~--~~~~~~-~~~g~-------~~~~~~~h~~~v~~~~~~~~v~a~~-d~~~~a~~~~---------~~~gvQ 168 (196)
T 2nv0_A 111 RQVDS--F--EADLTI-KGLDE-------PFTGVFIRAPHILEAGENVEVLSEH-NGRIVAAKQG---------QFLGCS 168 (196)
T ss_dssp TTTSE--E--EEEECC-TTCSS-------CEEEEEESCCEEEEECTTCEEEEEE-TTEEEEEEET---------TEEEES
T ss_pred ccccc--c--cCCccc-ccCCC-------ceEEEEEecceecccCCCcEEEEEE-CCEEEEEEEC---------CEEEEE
Confidence 00011 1 111222 22333 5778889999998889999999998 7899999873 699999
Q ss_pred ccCCccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHh
Q 014368 251 FHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQKK 286 (426)
Q Consensus 251 FHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~~~~~ 286 (426)
||||.+.. ..+|++|++.|++++++
T Consensus 169 fHPE~~~~-----------~~l~~~fl~~~~~~~~~ 193 (196)
T 2nv0_A 169 FHPELTED-----------HRVTQLFVEMVEEYKQK 193 (196)
T ss_dssp SCTTSSSC-----------CHHHHHHHHHHHHHHHH
T ss_pred ECCccCCc-----------hHHHHHHHHHHHhhhhh
Confidence 99998643 27999999998875554
No 28
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.92 E-value=7e-26 Score=211.42 Aligned_cols=201 Identities=18% Similarity=0.146 Sum_probs=123.7
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChh
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e 90 (426)
..|+|++.... ++ .++.++|+++|+.++++. +++++. .+||||||||++ |..+
T Consensus 3 ~~I~iiD~g~~-------n~-~si~~al~~~G~~~~v~~---~~~~l~----~~D~lilPG~g~--~~~~---------- 55 (211)
T 4gud_A 3 QNVVIIDTGCA-------NI-SSVKFAIERLGYAVTISR---DPQVVL----AADKLFLPGVGT--ASEA---------- 55 (211)
T ss_dssp CCEEEECCCCT-------TH-HHHHHHHHHTTCCEEEEC---CHHHHH----HCSEEEECCCSC--HHHH----------
T ss_pred CEEEEEECCCC-------hH-HHHHHHHHHCCCEEEEEC---CHHHHh----CCCEEEECCCCC--HHHH----------
Confidence 45778764421 11 456789999999999875 455553 489999998653 2110
Q ss_pred HHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccCC
Q 014368 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDN 170 (426)
Q Consensus 91 ~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (426)
+.++ .+..+++.+.+.++||||||+|||+|+.++|+++.+......+-.. -...+.......
T Consensus 56 -~~~~----------------~~~~~i~~~~~~~~PvlGIClG~QlL~~~~g~~~~~~~~~~~gl~~-~~~~v~~~~~~~ 117 (211)
T 4gud_A 56 -MKNL----------------TERDLIELVKRVEKPLLGICLGMQLLGKLSEEKGQKADEIVQCLGL-VDGEVRLLQTGD 117 (211)
T ss_dssp -HHHH----------------HHTTCHHHHHHCCSCEEEETHHHHTTSSEECCC----CCCEECCCS-SSCEEEECCCTT
T ss_pred -HHHH----------------HhcChHHHHHHcCCCEEEEchhHhHHHHHhCCcccccCCcccccee-ccceEEEcccCC
Confidence 1111 1123566777899999999999999999999987654321111000 001111111110
Q ss_pred ---CCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEE
Q 014368 171 ---YDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIM 247 (426)
Q Consensus 171 ---~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~ 247 (426)
...++..+.....+++++.++. ...++.+|++.+ +.+..++|++++|.+.+..+++ .+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~~~H~~~v---~~~~~~~a~~~~g~~~~~~v~~-------~~v~ 180 (211)
T 4gud_A 118 LPLPHMGWNTVQVKEGHPLFNGIEP-------DAYFYFVHSFAM---PVGDYTIAQCEYGQPFSAAIQA-------GNYY 180 (211)
T ss_dssp SCSSEEEEECCEECTTCGGGTTCCT-------TCCEEEEESEEC---CCCTTEEEEEESSSEEEEEEEE-------TTEE
T ss_pred cceeeccceeeeeeccChhhcCCCC-------CcEEEEEeeEEe---CCCCeEEEEecCCCeEEEEEeC-------CCEE
Confidence 1123455666677888887766 345667788775 4567788999888555544443 5799
Q ss_pred EEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 014368 248 GLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIA 282 (426)
Q Consensus 248 GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~ 282 (426)
|+|||||++ ++.+ .+||++|++.|.+
T Consensus 181 GvQFHPE~s-~~~G--------~~ll~nFl~~~ge 206 (211)
T 4gud_A 181 GVQFHPERS-SKAG--------ARLIQNFLELRGE 206 (211)
T ss_dssp EESSCGGGS-HHHH--------HHHHHHHHHC---
T ss_pred EEEccCEec-CccH--------HHHHHHHHHHhcc
Confidence 999999986 3333 5899999998753
No 29
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.91 E-value=2.3e-25 Score=206.59 Aligned_cols=187 Identities=12% Similarity=0.110 Sum_probs=122.9
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCC-----CEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYG-----AVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSN 86 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~G-----a~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~ 86 (426)
+|+|++.... .. .+|.+++++.| +.+++++... + ..+||||||||.+ + ++
T Consensus 2 ~I~iid~~~g-------~~-~s~~~~l~~~G~~~~~~~~~~~~~~~---~-----~~~dglilpG~g~--~---~~---- 56 (201)
T 1gpw_B 2 RIGIISVGPG-------NI-MNLYRGVKRASENFEDVSIELVESPR---N-----DLYDLLFIPGVGH--F---GE---- 56 (201)
T ss_dssp EEEEECCSSS-------CC-HHHHHHHHHHSTTBSSCEEEEECSCC---S-----SCCSEEEECCCSC--S---HH----
T ss_pred EEEEEecCCc-------hH-HHHHHHHHHcCCCCCceEEEEECCCc---c-----cCCCEEEECCCCc--H---HH----
Confidence 6788863311 11 45678899999 8888887522 1 4699999998643 1 11
Q ss_pred CChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhC--CcccccchhhhcccCC--CCcc
Q 014368 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACG--GTLYQDIEKEVSRKCP--ENQR 162 (426)
Q Consensus 87 ~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~G--G~l~~~~~~e~g~~~~--~~~~ 162 (426)
.++|++. ..+..+++.+.+.++||||||+|||+|+.++| |+ +++.. .++.+.. ....
T Consensus 57 ----~~~~l~~-------------~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~g~~G~-~~~l~-~~~g~v~~~~~~~ 117 (201)
T 1gpw_B 57 ----GMRRLRE-------------NDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPG-VKGLS-LIEGNVVKLRSRR 117 (201)
T ss_dssp ----HHHHHHH-------------TTCHHHHHHHHHTTCEEEEETHHHHTTSSEETTEEE-EECCC-SSSEEEEECCCSS
T ss_pred ----HHHHHHh-------------hCHHHHHHHHHHcCCeEEEEChhHHHHHHhhccCCC-CCCcc-eeeeEEEEcCCCC
Confidence 1234432 12457888888999999999999999999997 44 33321 0110000 0001
Q ss_pred eeecccCCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCC-C-eEEEEEeCCCCCC
Q 014368 163 VVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPD-G-LIEGFYDPDAYNP 240 (426)
Q Consensus 163 v~H~~~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~d-G-~Veaie~~~~~~~ 240 (426)
++|. +++++.....+ . .+.++++|++.|+.+ +++++|++++ | .++|++++
T Consensus 118 ~~~~-------g~~~l~~~~~~-------~-------~~~v~~~H~~~v~~~--~~~vla~s~~~g~~~~a~~~~----- 169 (201)
T 1gpw_B 118 LPHM-------GWNEVIFKDTF-------P-------NGYYYFVHTYRAVCE--EEHVLGTTEYDGEIFPSAVRK----- 169 (201)
T ss_dssp CSEE-------EEEEEEESSSS-------C-------CEEEEEEESEEEEEC--GGGEEEEEEETTEEEEEEEEE-----
T ss_pred CCcc-------cceeeEeccCC-------C-------CCeEEEECcceeccC--CCEEEEEEccCCceEEEEEEC-----
Confidence 1221 23444432221 1 467889999999865 7899999876 6 89999986
Q ss_pred CCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 014368 241 AEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIA 282 (426)
Q Consensus 241 ~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~ 282 (426)
.+++|+|||||++ .+.+ .++|++|+++|.+
T Consensus 170 ---~~i~gvQfHPE~~-~~~~--------~~l~~~f~~~~~~ 199 (201)
T 1gpw_B 170 ---GRILGFQFHPEKS-SKIG--------RKLLEKVIECSLS 199 (201)
T ss_dssp ---TTEEEESSCGGGS-HHHH--------HHHHHHHHHHSSC
T ss_pred ---CCEEEEECCCccc-CHhH--------HHHHHHHHHHhhc
Confidence 4799999999998 3222 5899999998754
No 30
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.89 E-value=2.8e-23 Score=194.21 Aligned_cols=188 Identities=12% Similarity=0.075 Sum_probs=120.4
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
+.+|+|+.- ... -..+++++...|+.+++++.. ++ ++.+|||||||| .|..|++
T Consensus 20 ~~~I~ii~~----~~~-----~~~~~~~l~~~g~~~~~~~~~---~~----l~~~d~iil~GG---~~~~~~~------- 73 (208)
T 2iss_D 20 HMKIGVLGV----QGD-----VREHVEALHKLGVETLIVKLP---EQ----LDMVDGLILPGG---ESTTMIR------- 73 (208)
T ss_dssp CCEEEEECS----SSC-----HHHHHHHHHHTTCEEEEECSG---GG----GGGCSEEEECSS---CHHHHHH-------
T ss_pred CcEEEEEEC----CCc-----hHHHHHHHHHCCCEEEEeCCh---HH----HhhCCEEEECCC---cHHHHHh-------
Confidence 467899842 111 123678899999999988742 23 346999999999 3444432
Q ss_pred hHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecccC
Q 014368 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (426)
+.|. .....+++.+.++++||||||+|||+|+.++||+.++... .+. ..+.+.
T Consensus 74 --~~~~---------------~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~lg-~~~------~~v~~~--- 126 (208)
T 2iss_D 74 --ILKE---------------MDMDEKLVERINNGLPVFATCAGVILLAKRIKNYSQEKLG-VLD------ITVERN--- 126 (208)
T ss_dssp --HHHH---------------TTCHHHHHHHHHTTCCEEEETHHHHHHEEEEC---CCCCC-CEE------EEEETT---
T ss_pred --hhhh---------------hhHHHHHHHHHHCCCeEEEECHHHHHHHHHcCCCCCCCcc-ccc------eEEEec---
Confidence 1111 1124678888889999999999999999999997544331 110 000000
Q ss_pred CCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEE
Q 014368 170 NYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGL 249 (426)
Q Consensus 170 ~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~Gv 249 (426)
......+.+ ..++.+ ..++. ..+.++.+|++.++.+|++++++|++ |+.++|++.+ +++|+
T Consensus 127 ~~g~~~~~~--~~~~~~-~~~~~------~~~~~~~~h~~~v~~~~~~~~v~a~~-d~~~~a~~~~---------~i~Gv 187 (208)
T 2iss_D 127 AYGRQVESF--ETFVEI-PAVGK------DPFRAIFIRAPRIVETGKNVEILATY-DYDPVLVKEG---------NILAC 187 (208)
T ss_dssp TTCSGGGCE--EEEECC-GGGCS------SCEEEEESSCCEEEEECSSCEEEEEE-TTEEEEEEET---------TEEEE
T ss_pred CCCcccccc--cCCccc-ccCCC------CceEEEEEeCcccccCCCCcEEEEEE-CCEEEEEEEC---------CEEEE
Confidence 000000111 112222 22331 25778889999998888999999998 6999999863 59999
Q ss_pred cccCCccCCCCCCCCCCCCcHHHHHHHHHHH
Q 014368 250 QFHPERMRRPDSDEFDYPGCPSAYQEFVKAV 280 (426)
Q Consensus 250 QFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av 280 (426)
|||||.+.. ..+|++|+++|
T Consensus 188 QfHPE~~~~-----------~~l~~~fl~~~ 207 (208)
T 2iss_D 188 TFHPELTDD-----------LRLHRYFLEMV 207 (208)
T ss_dssp SSCGGGSSC-----------CHHHHHHHTTC
T ss_pred EeCCCcCCc-----------HHHHHHHHHHh
Confidence 999998653 27999999765
No 31
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.89 E-value=3.5e-23 Score=195.80 Aligned_cols=202 Identities=15% Similarity=0.194 Sum_probs=124.0
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHC---CCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY---GAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSN 86 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~---Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~ 86 (426)
+++|+|++.... + ..|+++++.+ |+.+++++. .+.+ +.+||||||||++ +.++...
T Consensus 3 ~~~I~Il~~~~~----~-----~~~~~~l~~~~~~G~~~~~~~~---~~~l----~~~dglil~GG~~---~~~~~~~-- 61 (227)
T 2abw_A 3 EITIGVLSLQGD----F-----EPHINHFIKLQIPSLNIIQVRN---VHDL----GLCDGLVIPGGES---TTVRRCC-- 61 (227)
T ss_dssp CEEEEEECTTSC----C-----HHHHHHHHTTCCTTEEEEEECS---HHHH----HTCSEEEECCSCH---HHHHHHT--
T ss_pred CcEEEEEeCCCC----c-----HHHHHHHHHhccCCeEEEEEcC---cccc----ccCCEEEECCCcH---HHHHHHH--
Confidence 478999975421 2 3589999999 999998873 2333 4699999999952 2221100
Q ss_pred CChhHHHHHHhhcCCCccccchhh-HHHHHHHHHHHHc-CCCEEEEehHHHHHHHHhCCcccccc---hhhhcccCCCCc
Q 014368 87 LSPEELEEIRRLHTSDTAIDKEKD-SIELRLAKLCLER-NIPYLGICRGSQVLNVACGGTLYQDI---EKEVSRKCPENQ 161 (426)
Q Consensus 87 ~~~e~~~~ir~~h~~~~~~d~~rd-~~e~~lir~ale~-~iPILGIClG~QlLava~GG~l~~~~---~~e~g~~~~~~~ 161 (426)
.+| .....+++.+.+. ++||||||+|||+|+.++||++.... ..++|-. ..
T Consensus 62 ---------------------~~d~~~~~~~i~~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~~---~~ 117 (227)
T 2abw_A 62 ---------------------AYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGL---DI 117 (227)
T ss_dssp ---------------------THHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCCE---EE
T ss_pred ---------------------HHhHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHHhcCCccccccccccccCce---eE
Confidence 011 1235788888899 99999999999999999998753210 1122200 00
Q ss_pred ceeecccCCCCCce--EEEEEecCCcccccccccccccceEEEEecccccchhcc-CCCeEEEEEeC-----CCeEEEEE
Q 014368 162 RVVHIDYDNYDGHR--HVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRL-AQRFVPMAFAP-----DGLIEGFY 233 (426)
Q Consensus 162 ~v~H~~~~~~~g~~--~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~L-p~g~~vlA~s~-----dG~Veaie 233 (426)
.+.. ....+.... ..+.+ ++.. ...+. .+.+...|++.|..+ |++++++|+++ ++.++|++
T Consensus 118 ~~~~-~~~g~~~~~~~~~~~~-~~~~--~~~g~-------~~~~~~~h~~~v~~~~~~~~~vla~~~~~~~g~~~~~a~~ 186 (227)
T 2abw_A 118 TICR-NFYGSQNDSFICSLNI-ISDS--SAFKK-------DLTAACIRAPYIREILSDEVKVLATFSHESYGPNIIAAVE 186 (227)
T ss_dssp EEEC-CC----CCEEEEECEE-CCCC--TTCCT-------TCEEEEESCCEEEEECCTTCEEEEEEEETTTEEEEEEEEE
T ss_pred EEEe-cCCCcccccccccccc-cccc--ccCCC-------ceeEEEEEcceEeecCCCCcEEEEEcccccCCCCceEEEE
Confidence 0000 000000000 11111 1100 00011 233334567777777 89999999986 68999998
Q ss_pred eCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHhc
Q 014368 234 DPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQKKL 287 (426)
Q Consensus 234 ~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av~~~~~~~ 287 (426)
.. +++|+|||||.+.. ..+|++|+++|+.+...+
T Consensus 187 ~~---------~v~gvQfHPE~~~~-----------~~l~~~Fl~~~~~~~~~~ 220 (227)
T 2abw_A 187 QN---------NCLGTVFHPELLPH-----------TAFQQYFYEKVKNYKYSL 220 (227)
T ss_dssp ET---------TEEEESSCGGGSSC-----------CHHHHHHHHHHHHHHHHT
T ss_pred EC---------CEEEEEECCeeCCC-----------cHHHHHHHHHHHhhhcch
Confidence 63 59999999998743 289999999987665543
No 32
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.88 E-value=1.4e-23 Score=194.88 Aligned_cols=189 Identities=16% Similarity=0.203 Sum_probs=116.5
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChh
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e 90 (426)
.+|+|+.... ..+ .+|+++++++|+.+++++.+ +. ++.+||||||||++.++.
T Consensus 3 ~~I~iid~~~---~~~-----~~~~~~l~~~G~~~~~~~~~---~~----l~~~d~lil~G~g~~~~~------------ 55 (200)
T 1ka9_H 3 MKALLIDYGS---GNL-----RSAAKALEAAGFSVAVAQDP---KA----HEEADLLVLPGQGHFGQV------------ 55 (200)
T ss_dssp CEEEEECSSC---SCH-----HHHHHHHHHTTCEEEEESST---TS----CSSCSEEEECCCSCHHHH------------
T ss_pred cEEEEEeCCC---ccH-----HHHHHHHHHCCCeEEEecCh---HH----cccCCEEEECCCCcHHHH------------
Confidence 5788884321 111 34689999999999998742 22 457999999986532111
Q ss_pred HHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH---hCCcccccchhhhcccCCCCcceeecc
Q 014368 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA---CGGTLYQDIEKEVSRKCPENQRVVHID 167 (426)
Q Consensus 91 ~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava---~GG~l~~~~~~e~g~~~~~~~~v~H~~ 167 (426)
++|+ ++..+..+++.+++.++||||||+|||+|+.+ +|+ +++.. .+. ..+.+..
T Consensus 56 -~~~l-------------~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~~~~Gg--~~~l~-~~~------g~v~~~~ 112 (200)
T 1ka9_H 56 -MRAF-------------QESGFVERVRRHLERGLPFLGICVGMQVLYEGSEEAPG--VRGLG-LVP------GEVRRFR 112 (200)
T ss_dssp -HHTT-------------SSSCTHHHHHHHHHTTCCEEECTHHHHTTSSEETTSTT--CCCCC-SSS------SEEEECC
T ss_pred -HHHH-------------HhcCHHHHHHHHHHcCCeEEEEcHHHHHHHHhccccCC--cCCcc-ccc------cEEEECC
Confidence 1111 11123568888889999999999999999999 575 44431 111 1111111
Q ss_pred c-CCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhccCCCeEEEEEeCC-C-eEEEEEeCCCCCCCCCC
Q 014368 168 Y-DNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPD-G-LIEGFYDPDAYNPAEGK 244 (426)
Q Consensus 168 ~-~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~Lp~g~~vlA~s~d-G-~Veaie~~~~~~~~~~~ 244 (426)
. .....+++.|.+.+ + +..+.+. ..++++++|. .+ +++ .+ |+++| | .++++.++ .
T Consensus 113 ~~~~~~~G~~~v~~~~-~-l~~~~~~------~~~~~Hs~~~-~~---~~~-~v-a~s~~~g~~~~~~~~~--------~ 170 (200)
T 1ka9_H 113 AGRVPQMGWNALEFGG-A-FAPLTGR------HFYFANSYYG-PL---TPY-SL-GKGEYEGTPFTALLAK--------E 170 (200)
T ss_dssp SSSSSEEEEEECEECG-G-GGGGTTC------EEEEEESEEC-CC---CTT-CC-EEEEETTEEEEEEEEC--------S
T ss_pred CCCCCceeEEEEEech-h-hhcCCCC------CEEEeccccc-CC---CCC-cE-EEEEeCCeEEEEEEee--------C
Confidence 0 00012467787766 4 4333221 2456667666 33 344 56 88877 7 68888775 4
Q ss_pred cEEEEcccCCccCCCCCCCCCCCCcHHHH---HHHHHHH
Q 014368 245 FIMGLQFHPERMRRPDSDEFDYPGCPSAY---QEFVKAV 280 (426)
Q Consensus 245 ~i~GvQFHPE~~~~~~~~~~d~~~~~~lf---~~Fv~av 280 (426)
+++|+|||||.+. +.+ .++| ++|++.|
T Consensus 171 ~i~gvQfHPE~~~-~~g--------~~l~~~~~~F~~~~ 200 (200)
T 1ka9_H 171 NLLAPQFHPEKSG-KAG--------LAFLALARRYFEVL 200 (200)
T ss_dssp SEEEESSCTTSSH-HHH--------HHHHHHHHHHC---
T ss_pred CEEEEecCCCcCc-cch--------hHHHHHHHHHHhhC
Confidence 8999999999985 222 5899 9998764
No 33
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.86 E-value=2.9e-23 Score=221.11 Aligned_cols=199 Identities=17% Similarity=0.152 Sum_probs=130.5
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
+|+|+|++.... ++ ..|+++++++|+.+++++.. +. ..++.+||||||||+++++ +
T Consensus 4 m~~I~Iid~~~g-------~~-~~~~~~l~~~G~~~~vv~~~---~~--~~l~~~DglILpGgG~~~~--~--------- 59 (555)
T 1jvn_A 4 MPVVHVIDVESG-------NL-QSLTNAIEHLGYEVQLVKSP---KD--FNISGTSRLILPGVGNYGH--F--------- 59 (555)
T ss_dssp SCEEEEECCSCS-------CC-HHHHHHHHHTTCEEEEESSG---GG--CCSTTCSCEEEEECSCHHH--H---------
T ss_pred CCEEEEEECCCC-------CH-HHHHHHHHHCCCEEEEECCc---cc--cccccCCEEEECCCCchHh--H---------
Confidence 689999974311 11 35889999999999998842 22 2346799999999654221 1
Q ss_pred hHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHh--CCcccccchhhhccc---CCC-Ccce
Q 014368 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC--GGTLYQDIEKEVSRK---CPE-NQRV 163 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~--GG~l~~~~~~e~g~~---~~~-~~~v 163 (426)
.++++ +..+..+++.+++.++||||||+|||+|+.++ ||. +++.. .++.. .+. ...+
T Consensus 60 --~~~l~-------------~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~a~~egg~-~~~Lg-~lgg~v~~~~~~~~~~ 122 (555)
T 1jvn_A 60 --VDNLF-------------NRGFEKPIREYIESGKPIMGIXVGLQALFAGSVESPK-STGLN-YIDFKLSRFDDSEKPV 122 (555)
T ss_dssp --HHHHH-------------HTTCHHHHHHHHHTTCCEEEEEHHHHTTEEEETTBTT-CCCCC-SEEEEEEECCTTTSCS
T ss_pred --hhhhh-------------hccHHHHHHHHHHcCCcEEEEchhhhhhhhhhhcCCC-ccccC-CCCcEEEECCcCCCCC
Confidence 11111 11125688888899999999999999999988 222 23321 11110 000 1123
Q ss_pred eecccCCCCCceEEEEEecCCcccccccccccccceEEEEecccccchhc----cCCCeEEEEEeC---CCeEEEEEeCC
Q 014368 164 VHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKR----LAQRFVPMAFAP---DGLIEGFYDPD 236 (426)
Q Consensus 164 ~H~~~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~~~V~~----Lp~g~~vlA~s~---dG~Veaie~~~ 236 (426)
+|++ ++.|.+. +++++.++.. ...+++||+|++.++. +|+++.++|+++ |+.+++++.
T Consensus 123 ~~~G-------~~~v~~~--~~L~~~l~~~----~~~~~vHS~~~~~i~~~~~~L~~g~~vlA~s~~~~D~~i~ai~~-- 187 (555)
T 1jvn_A 123 PEIG-------WNSCIPS--ENLFFGLDPY----KRYYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNK-- 187 (555)
T ss_dssp SEEE-------EECCCCC--TTCCTTCCTT----SCEEEEESEECBCCHHHHHHHHHTTCEEEEEEETTEEEEEEEEE--
T ss_pred cccc-------ceEEEEc--CHHHhhCCCC----ceEEEEEEEEEEecccccccCCCCCEEEEEEcCCCCCeEEEEEe--
Confidence 4443 4455443 6777766541 1257899999988765 367888999886 578999994
Q ss_pred CCCCCCCCcEEEEcccCCccCCCCCCCCCCCCcHHHHHHHHHHH
Q 014368 237 AYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAV 280 (426)
Q Consensus 237 ~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~av 280 (426)
.+++|+|||||.+.. . ..++|++|+++.
T Consensus 188 -------~~i~GvQFHPE~s~~-~--------g~~l~~~Fl~~~ 215 (555)
T 1jvn_A 188 -------NNIFATQFHPEKSGK-A--------GLNVIENFLKQQ 215 (555)
T ss_dssp -------TTEEEESSBGGGSHH-H--------HHHHHHHHHTTC
T ss_pred -------CCEEEEEeCcEecCh-h--------HHHHHHHHHhcc
Confidence 469999999997632 1 258999999754
No 34
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=99.74 E-value=4.4e-17 Score=161.18 Aligned_cols=137 Identities=14% Similarity=0.092 Sum_probs=97.6
Q ss_pred CCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHh
Q 014368 62 EPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (426)
Q Consensus 62 e~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~ 141 (426)
+.+||+|++|||- ....|++.+. +. -+..+++++.++++|+||||+|+|++..++
T Consensus 98 ~~~DglIITGap~-~~~~~ed~~y---------w~---------------el~~li~~~~~~~~~~lgIC~GaQ~~l~~~ 152 (301)
T 2vdj_A 98 EKFDGLIITGAPV-ETLSFEEVDY---------WE---------------ELKRIMEYSKTNVTSTLHICWGAQAGLYHH 152 (301)
T ss_dssp SCEEEEEECCCTT-TTSCGGGSTT---------HH---------------HHHHHHHHHHHHEEEEEEETHHHHHHHHHH
T ss_pred cccCEEEECCCCC-cCCCcccCch---------HH---------------HHHHHHHHHHHcCCcEEEEcHHHHHHHHHh
Confidence 5799999999972 2233444442 21 135788888899999999999999976666
Q ss_pred CC-cccccchhhhcccCCCCcceeecccCCCCCceEEEEEe-cCCcccccccccccccceEEEEecc-----cccchhcc
Q 014368 142 GG-TLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVV-KDTPLHDWFKDSLEEEKMEIWVNSY-----HHQGVKRL 214 (426)
Q Consensus 142 GG-~l~~~~~~e~g~~~~~~~~v~H~~~~~~~g~~~~V~v~-~~s~L~~~~~~~~~~~~~~~~Vns~-----H~~~V~~L 214 (426)
|| ..+....+++| ..++.+. +.++|+..+++ .|.+..+ |.+.|..+
T Consensus 153 ~G~~k~~~~~K~~G--------------------v~~~~~~~~~~pL~~g~~~-------~f~~phsr~~~~~~~~v~~~ 205 (301)
T 2vdj_A 153 YGVQKYPLKEKMFG--------------------VFEHEVREQHVKLLQGFDE-------LFFAVHSRHTEVRESDIREV 205 (301)
T ss_dssp HCCCCEEEEEEEEE--------------------EEEEEECCSSCGGGTTCCS-------EEEEEEEEEEECCHHHHHTC
T ss_pred CCCccccCCCCEEE--------------------EEEEEecCCCCccccCCCC-------ceEeeeEeccCcCHHHccCC
Confidence 65 33332334444 3334443 36788887776 5666654 44667767
Q ss_pred CCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 014368 215 AQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (426)
Q Consensus 215 p~g~~vlA~s~dG~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (426)
| +++++|.|+.+.++++..++ ..++|+|||||++..
T Consensus 206 p-ga~vLA~S~~~~~~~~~~~~-------~~~~~vQgHpEyd~~ 241 (301)
T 2vdj_A 206 K-ELTLLANSEEAGVHLVIGQE-------GRQVFALGHSEYSCD 241 (301)
T ss_dssp T-TEEEEEEETTTEEEEEEEGG-------GTEEEECSCTTCCTT
T ss_pred C-CCEEEEeCCCCcceEEEecC-------CCEEEEECCCCCCHH
Confidence 5 99999999999999999965 579999999998754
No 35
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=99.74 E-value=5e-17 Score=161.34 Aligned_cols=182 Identities=13% Similarity=0.061 Sum_probs=117.4
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEE--EcCCCCh------h-------hhhhh-cCCCCEEEECCCCCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAI--VPRVSGV------H-------MLLDS-FEPIHGVLLCEGEDI 75 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vi--vp~~~~~------~-------~l~~~-le~~DGVILsGG~di 75 (426)
+|||+...... .++ ...+++.|...+..+.+ +...... + .+.+. .+.+||+|++|||-
T Consensus 49 kI~ILnlmp~k----~~t-e~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~- 122 (312)
T 2h2w_A 49 EILILNLMPDK----IKT-EIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPV- 122 (312)
T ss_dssp EEEEECCCSSH----HHH-HHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSC-
T ss_pred eEEEEeCCCCc----Cch-HHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCCC-
Confidence 68998753221 111 34467777766654443 3222111 0 12221 35799999999972
Q ss_pred CCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhCCc-ccccchhhhc
Q 014368 76 DPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGT-LYQDIEKEVS 154 (426)
Q Consensus 76 dp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~GG~-l~~~~~~e~g 154 (426)
....|++.+. +. -+..+++++.+.++|+||||+|+|++..++||. .+....+++|
T Consensus 123 ~~~~~ed~~y---------w~---------------el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~~~K~~G 178 (312)
T 2h2w_A 123 ELLPFEEVDY---------WE---------------ELTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIPKYELPQKLSG 178 (312)
T ss_dssp TTSCGGGSTT---------HH---------------HHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEE
T ss_pred CCCCCccCch---------HH---------------HHHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCccccCCCCEEE
Confidence 2233444443 21 135788888899999999999999977777663 3332223444
Q ss_pred ccCCCCcceeecccCCCCCceEEEEEecCCcccccccccccccceEEEEecccc-----cchhccCCCeEEEEEeCCCeE
Q 014368 155 RKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHH-----QGVKRLAQRFVPMAFAPDGLI 229 (426)
Q Consensus 155 ~~~~~~~~v~H~~~~~~~g~~~~V~v~~~s~L~~~~~~~~~~~~~~~~Vns~H~-----~~V~~Lp~g~~vlA~s~dG~V 229 (426)
..++.+...++|+..+++ .|.+..+|+ +.|..+ ++++++|.|+.+.+
T Consensus 179 --------------------v~~~~~~~~~pL~~g~~~-------~f~vphsr~~e~~~~~v~~~-pga~vLA~S~~~~~ 230 (312)
T 2h2w_A 179 --------------------VYKHRVAKDSVLFRGHDD-------FFWAPHSRYTEVKKEDIDKV-PELEILAESDEAGV 230 (312)
T ss_dssp --------------------EEEEEESSCCGGGTTCCS-------EEEEEEEEEEECCHHHHTTC-C-CEEEEEETTTEE
T ss_pred --------------------EEEEEEcCCCccccCCCC-------ceEeeEEeccccCHHHccCC-CCCEEEEcCCCCcc
Confidence 455566667888887776 566666543 334444 59999999999999
Q ss_pred EEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 014368 230 EGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (426)
Q Consensus 230 eaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (426)
+++..++ ..++|+|||||++..
T Consensus 231 q~~~~~~-------~~~~~vQgHPEyd~~ 252 (312)
T 2h2w_A 231 YVVANKS-------ERQIFVTGHPEYDRY 252 (312)
T ss_dssp EEEECSS-------SSEEEECSCTTCCTT
T ss_pred eEEEecC-------CCEEEEECCCCCCHH
Confidence 9999865 579999999998754
No 36
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.27 E-value=7.6e-11 Score=135.41 Aligned_cols=223 Identities=17% Similarity=0.160 Sum_probs=124.0
Q ss_pred CCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCC
Q 014368 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLS 88 (426)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~ 88 (426)
.+|+|+|+.-+... ....+.+++..+|+.+++++.. +...-.+.++.+||||||||. .|++....
T Consensus 1046 ~~pkVaIi~~~G~N-------~~~~~~~A~~~aG~~~~~v~~~-dl~~~~~~l~~~d~lvlPGGf-----SygD~l~~-- 1110 (1303)
T 3ugj_A 1046 ARPKVAVLREQGVN-------SHVEMAAAFHRAGFDAIDVHMS-DLLGGRIGLGNFHALVACGGF-----SYGDVLGA-- 1110 (1303)
T ss_dssp CCCEEEEEECTTCC-------CHHHHHHHHHHTTCEEEEEEHH-HHHTTSCCGGGCSEEEECCSC-----GGGGTTST--
T ss_pred CCCEEEEEecCCcC-------CHHHHHHHHHHhCCceEEEeec-ccccCcccHhhCCEEEECCCC-----cchhhhcc--
Confidence 47999999866442 2234577899999999988631 000011234579999999994 35554320
Q ss_pred hhHHHHHHhhcCCCccccchhhHHHHHHHHHHH-HcCCCEEEEehHHHHHHHHhCCcccccchhhhcccCCCCcceeecc
Q 014368 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCL-ERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHID 167 (426)
Q Consensus 89 ~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~al-e~~iPILGIClG~QlLava~GG~l~~~~~~e~g~~~~~~~~v~H~~ 167 (426)
.. -|. ....++......++.++ +.++|+||||.|||+|+.+.| +.+... . ...+.++.
T Consensus 1111 g~--~~a---------~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~g--llPg~~-~-------~p~l~~N~ 1169 (1303)
T 3ugj_A 1111 GE--GWA---------KSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRE--LIPGSE-L-------WPRFVRNH 1169 (1303)
T ss_dssp TH--HHH---------HHHHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGG--GSTTCT-T-------CCEEECCT
T ss_pred ch--hHH---------HHHHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHhcC--cCCCCC-C-------CCeEecCC
Confidence 00 010 01223333445566544 579999999999999998632 122110 0 00112222
Q ss_pred cCCCCCceEEEEEec-CCcccccccccccccceEEEEecccccc---------hhcc-CCCeEEEEE-------------
Q 014368 168 YDNYDGHRHVVKVVK-DTPLHDWFKDSLEEEKMEIWVNSYHHQG---------VKRL-AQRFVPMAF------------- 223 (426)
Q Consensus 168 ~~~~~g~~~~V~v~~-~s~L~~~~~~~~~~~~~~~~Vns~H~~~---------V~~L-p~g~~vlA~------------- 223 (426)
...+...+..+++.. .|++++.+..+ .+.+.-.|+++ +++| ..+..++-+
T Consensus 1170 s~~f~~r~~~~~v~~~~s~~~~~~~g~------~~~i~vaHgEG~~~~~~~~~l~~l~~~~~v~~rY~d~~g~~~~~yp~ 1243 (1303)
T 3ugj_A 1170 SDRFEARFSLVEVTQSPSLLLQGMVGS------QMPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPA 1243 (1303)
T ss_dssp TSSCEEEEEEEEECCCSCGGGTTCTTC------EEEEEEEESSCEEECSSHHHHHHHHHTTCEEEEEBCTTSCBCCSTTT
T ss_pred CCCeEEeCeEEEECCCCChhhhccCCC------EEeeeeEeCCCCeeeCCHHHHHHHHhCCcEEEEEeCCCCCcccCCCC
Confidence 222233456666653 46666666432 44444455432 1111 133333333
Q ss_pred eCCC---eEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCC------CCCCCcHHHHHHHHHHH
Q 014368 224 APDG---LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDE------FDYPGCPSAYQEFVKAV 280 (426)
Q Consensus 224 s~dG---~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~------~d~~~~~~lf~~Fv~av 280 (426)
|++| -|+||..++ .+++|+..||||...+.... -+.....++|+|-+++|
T Consensus 1244 NPNGS~~~IaGi~s~~-------Grvlg~MpHPEr~~~~~~~~~~p~~~~~~~pw~~~F~na~~w~ 1302 (1303)
T 3ugj_A 1244 NPNGSPNGITAVTTEN-------GRVTIMMPHPERVFRTVANSWHPENWGEDSPWMRIFRNARKQL 1302 (1303)
T ss_dssp SSSCCGGGEEEEECTT-------SSEEEESSBGGGSSBGGGCSSCCTTCCSBCTTHHHHHHHHHHH
T ss_pred CCCCChhhceEeECCC-------CCEEEEcCChHHccccccccCCCcccCCCCcHHHHHHHHHHhc
Confidence 3555 599999987 78999999999976532110 11234567777765544
No 37
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.33 E-value=3.8e-07 Score=85.25 Aligned_cols=100 Identities=12% Similarity=0.110 Sum_probs=64.8
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCC-CChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
|+|++++.-+.. .....| -.++.+++.+.|+.+.++... .+.+++.+.++.+|+|+++||.- ..
T Consensus 28 ~~i~~Ip~As~~-~~~~~~-~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~---~~---------- 92 (206)
T 3l4e_A 28 KTVTFIPTASTV-EEVTFY-VEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNT---FF---------- 92 (206)
T ss_dssp CEEEEECGGGGG-CSCCHH-HHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCH---HH----------
T ss_pred CEEEEECCCCCC-CCHHHH-HHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCH---HH----------
Confidence 788888643221 011112 345678899999998877422 24444445566799999999831 10
Q ss_pred hHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHH
Q 014368 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNV 139 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLav 139 (426)
-+.++ ++.-....++.+.++++|++|||.|+|+++.
T Consensus 93 -l~~~L-------------~~~gl~~~l~~~~~~G~p~~G~sAGa~~l~~ 128 (206)
T 3l4e_A 93 -LLQEL-------------KRTGADKLILEEIAAGKLYIGESAGAVITSP 128 (206)
T ss_dssp -HHHHH-------------HHHTHHHHHHHHHHTTCEEEEETHHHHTTSS
T ss_pred -HHHHH-------------HHCChHHHHHHHHHcCCeEEEECHHHHHhcc
Confidence 01222 2233456788888899999999999999964
No 38
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=98.28 E-value=5.2e-07 Score=85.43 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=62.1
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCCh
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~ 89 (426)
.|+|+|++.-... ... +--..++.+++.+.|+.++++....+. .+.++.+|+|+|+||.. ..
T Consensus 31 ~~~i~iI~~a~~~-~~~-~~~~~~~~~al~~lG~~~~~v~~~~d~---~~~l~~ad~I~lpGG~~---~~---------- 92 (229)
T 1fy2_A 31 RRSAVFIPFAGVT-QTW-DEYTDKTAEVLAPLGVNVTGIHRVADP---LAAIEKAEIIIVGGGNT---FQ---------- 92 (229)
T ss_dssp CCEEEEECTTCCS-SCH-HHHHHHHHHHHGGGTCEEEETTSSSCH---HHHHHHCSEEEECCSCH---HH----------
T ss_pred CCeEEEEECCCCC-CCH-HHHHHHHHHHHHHCCCEEEEEeccccH---HHHHhcCCEEEECCCcH---HH----------
Confidence 4788888654211 111 112345677888999988877533232 22345689999999831 11
Q ss_pred hHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 90 e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
-+..+++ .-....++.++++++|++|||.|+|+|+..
T Consensus 93 -~~~~l~~-------------~gl~~~l~~~~~~G~p~~G~sAG~~~l~~~ 129 (229)
T 1fy2_A 93 -LLKESRE-------------RGLLAPMADRVKRGALYIGWSAGANLACPT 129 (229)
T ss_dssp -HHHHHHH-------------TTCHHHHHHHHHTTCEEEEETHHHHHTSSB
T ss_pred -HHHHHHH-------------CChHHHHHHHHHcCCEEEEECHHHHhhccc
Confidence 0122222 122467787888899999999999999763
No 39
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=97.75 E-value=7e-05 Score=68.38 Aligned_cols=97 Identities=15% Similarity=0.227 Sum_probs=61.1
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh---------h-----hhhh-hcCCCCEEEECCCCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV---------H-----MLLD-SFEPIHGVLLCEGED 74 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~---------~-----~l~~-~le~~DGVILsGG~d 74 (426)
+.+|+|+......... -...++.+..+|..+.++....+. . .+.+ ..+.+|+||+|||.+
T Consensus 23 ~~kV~ill~~g~~~~e-----~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~ 97 (193)
T 1oi4_A 23 SKKIAVLITDEFEDSE-----FTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHS 97 (193)
T ss_dssp CCEEEEECCTTBCTHH-----HHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTH
T ss_pred CCEEEEEECCCCCHHH-----HHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcC
Confidence 3578888654321111 123466788899998877654321 0 1111 124689999999942
Q ss_pred CCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 75 IDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 75 idp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
+.. ...+.....+++.+.++++||.|||.|.|+|+.+
T Consensus 98 --~~~---------------------------l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 98 --PDY---------------------------LRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp --HHH---------------------------HTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred --HHH---------------------------hhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 110 0012334678888889999999999999999986
No 40
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=97.16 E-value=0.00068 Score=61.49 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=62.0
Q ss_pred CCCCCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCC-----------hh-hhhh-hcCCCCEEEECCC
Q 014368 6 LSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG-----------VH-MLLD-SFEPIHGVLLCEG 72 (426)
Q Consensus 6 ~~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~-----------~~-~l~~-~le~~DGVILsGG 72 (426)
|...+.+|+|+....-..-+ + -.-++.++++|..+.++....+ .+ .+.+ ..+.+|+||+|||
T Consensus 4 m~~t~~~v~il~~~gFe~~E---~--~~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG 78 (177)
T 4hcj_A 4 MGKTNNILYVMSGQNFQDEE---Y--FESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGG 78 (177)
T ss_dssp -CCCCEEEEECCSEEECHHH---H--HHHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCS
T ss_pred cccCCCEEEEECCCCccHHH---H--HHHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCC
Confidence 44455777777543221111 1 1234668899999988764321 01 1111 1246899999999
Q ss_pred CCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 73 EDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 73 ~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
.+ +... ..+.....+++.+.++++||.+||-|-++|+.+
T Consensus 79 ~g--~~~l---------------------------~~~~~~~~~l~~~~~~~k~iaaIC~g~~~La~a 117 (177)
T 4hcj_A 79 IG--CITL---------------------------WDDWRTQGLAKLFLDNQKIVAGIGSGVVIMANA 117 (177)
T ss_dssp GG--GGGG---------------------------TTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred cc--HHHH---------------------------hhCHHHHHHHHHHHHhCCEEEEecccHHHHHHC
Confidence 53 1111 112234678899999999999999999999764
No 41
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=97.13 E-value=0.00097 Score=62.53 Aligned_cols=32 Identities=16% Similarity=0.072 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEehHHHHHHHHhC
Q 014368 111 SIELRLAKLCLERNIPYLGICRGSQVLNVACG 142 (426)
Q Consensus 111 ~~e~~lir~ale~~iPILGIClG~QlLava~G 142 (426)
.....+++.+.++++||.+||-|-++|+.++.
T Consensus 120 ~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL~ 151 (232)
T 1vhq_A 120 RELKALAQAMHQAGKPLGFMCIAPAMLPKIFD 151 (232)
T ss_dssp HHHHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred HHHHHHHHHHHHcCCEEEEECHHHHHHHHHhc
Confidence 34467888999999999999999999998854
No 42
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=96.98 E-value=0.0012 Score=60.01 Aligned_cols=98 Identities=16% Similarity=0.135 Sum_probs=60.2
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCC------------hh-hhhhh--cCCCCEEEECCCCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG------------VH-MLLDS--FEPIHGVLLCEGED 74 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~------------~~-~l~~~--le~~DGVILsGG~d 74 (426)
..+|+|+.......- ++ ..-++.+..+|..+.++..... .+ .+.+. ...+|.||+|||..
T Consensus 3 ~~~v~ill~~g~~~~---e~--~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~ 77 (197)
T 2rk3_A 3 SKRALVILAKGAEEM---ET--VIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNL 77 (197)
T ss_dssp CCEEEEEECTTCCHH---HH--HHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHH
T ss_pred CCEEEEEECCCCcHH---HH--HHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCch
Confidence 356777765432111 11 2245678888988887754321 11 12221 25799999999941
Q ss_pred CCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 75 IDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 75 idp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
. +. +...+.....+++.+.++++||.+||-|-++|+.+
T Consensus 78 ~-~~---------------------------~l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 78 G-AQ---------------------------NLSESAAVKEILKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp H-HH---------------------------HHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred h-HH---------------------------HhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 0 00 00112334678888889999999999999999865
No 43
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=96.94 E-value=0.0014 Score=57.80 Aligned_cols=96 Identities=20% Similarity=0.288 Sum_probs=58.7
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh-----------h-hhhhh-cCCCCEEEECCCCCCCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-----------H-MLLDS-FEPIHGVLLCEGEDIDP 77 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-----------~-~l~~~-le~~DGVILsGG~didp 77 (426)
.+|+|+........ + -..-++.+...|..+.++...... + .+.+. .+.+|.||+|||.+ +
T Consensus 3 ~ki~il~~~g~~~~---e--~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~--~ 75 (168)
T 3l18_A 3 MKVLFLSADGFEDL---E--LIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKA--P 75 (168)
T ss_dssp CEEEEECCTTBCHH---H--HHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSH--H
T ss_pred cEEEEEeCCCccHH---H--HHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcC--H
Confidence 36777755432111 1 123456788889888877543210 0 11111 12589999999952 1
Q ss_pred CcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 78 SLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 78 ~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
.. ...+.....+++.+.++++||.+||-|.++|+.+
T Consensus 76 ~~---------------------------~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 76 EI---------------------------VRLNEKAVMITRRMFEDDKPVASICHGPQILISA 111 (168)
T ss_dssp HH---------------------------HTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred HH---------------------------hccCHHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence 10 0012234578888889999999999999999875
No 44
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=96.83 E-value=0.0019 Score=58.15 Aligned_cols=96 Identities=17% Similarity=0.315 Sum_probs=57.7
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh-----------------hhhhhh-cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-----------------HMLLDS-FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-----------------~~l~~~-le~~DGVILsGG 72 (426)
.+|+|+....... .++ ...++.+...|..+.++...... ..+.+. .+.+|+||+|||
T Consensus 10 ~~v~il~~~g~~~---~e~--~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG 84 (190)
T 2vrn_A 10 KKIAILAADGVEE---IEL--TSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGG 84 (190)
T ss_dssp CEEEEECCTTCBH---HHH--HHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCC
T ss_pred CEEEEEeCCCCCH---HHH--HHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCC
Confidence 5788876532211 111 22356688888888777543210 011111 136899999999
Q ss_pred C-CCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 73 E-DIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 73 ~-didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
. +.+ . ...+.....+++.+.++++||.+||-|.++|+.+
T Consensus 85 ~~~~~--~---------------------------~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 85 TVNPD--K---------------------------LRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET 124 (190)
T ss_dssp THHHH--H---------------------------HTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred chhHH--H---------------------------HhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence 4 210 0 0012334678888889999999999999999874
No 45
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=96.80 E-value=0.0043 Score=58.98 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCCEEEEehHHHHHHHHh
Q 014368 112 IELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (426)
Q Consensus 112 ~e~~lir~ale~~iPILGIClG~QlLava~ 141 (426)
....+++.+.++++||.+||-|..+|+.+-
T Consensus 139 ~l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 139 EFKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp HHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 346788898999999999999999999875
No 46
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=96.80 E-value=0.0013 Score=60.37 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=59.6
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCC--------------h-hhhhhh-cCCCCEEEECCCCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG--------------V-HMLLDS-FEPIHGVLLCEGED 74 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~--------------~-~~l~~~-le~~DGVILsGG~d 74 (426)
.+|+|+....... .++ ..-++.+..+|..+.++..... . ..+.+. .+.+|+||+|||..
T Consensus 3 ~kV~ill~~g~~~---~e~--~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~ 77 (205)
T 2ab0_A 3 ASALVCLAPGSEE---TEA--VTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIK 77 (205)
T ss_dssp CEEEEEECTTCCH---HHH--HHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHH
T ss_pred cEEEEEEcCCCcH---HHH--HHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcc
Confidence 4677776543211 111 2235678889998887754332 0 112221 25699999999941
Q ss_pred CCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHH-HHHHHH
Q 014368 75 IDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS-QVLNVA 140 (426)
Q Consensus 75 idp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~-QlLava 140 (426)
.+. +...+.....+++.+.++++||.+||-|. ++|+.+
T Consensus 78 -~~~---------------------------~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 78 -GAE---------------------------CFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH 116 (205)
T ss_dssp -HHH---------------------------HHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred -cHH---------------------------HhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence 000 00112334678888899999999999999 999853
No 47
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=96.70 E-value=0.0038 Score=56.35 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=60.7
Q ss_pred CCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC-Ch-----------h-hhhhh-cCCCCEEEECCCCC
Q 014368 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GV-----------H-MLLDS-FEPIHGVLLCEGED 74 (426)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~-----------~-~l~~~-le~~DGVILsGG~d 74 (426)
+.++|+|+.......- ++ ..-++.+..+|..+.++.... .. + .+.+. .+.+|.||+|||..
T Consensus 4 m~kkv~ill~~g~~~~---e~--~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~ 78 (190)
T 4e08_A 4 MSKSALVILAPGAEEM---EF--IIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLG 78 (190)
T ss_dssp CCCEEEEEECTTCCHH---HH--HHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHH
T ss_pred CCcEEEEEECCCchHH---HH--HHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCCh
Confidence 4457777754322111 11 234577888999988876543 11 0 12221 13589999999931
Q ss_pred CCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 75 IDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 75 idp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
... +...+.....+++.+.++++||.+||-|.++|+.+
T Consensus 79 ---~~~-------------------------~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 79 ---GSN-------------------------AMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKH 116 (190)
T ss_dssp ---HHH-------------------------HHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred ---HHH-------------------------HhhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 000 00112334678888899999999999999999864
No 48
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=96.62 E-value=0.0043 Score=55.87 Aligned_cols=95 Identities=13% Similarity=0.012 Sum_probs=57.1
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHH-CCCEEEEEcCCCC-----------h-hhhhhh-cCCCCEEEECCCCCCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVG-YGAVPAIVPRVSG-----------V-HMLLDS-FEPIHGVLLCEGEDID 76 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~-~Ga~~vivp~~~~-----------~-~~l~~~-le~~DGVILsGG~did 76 (426)
.+|+|+......... + ..-++.+.. .|..+.++..... . ..+.+. .+.+|+||+|||.+.+
T Consensus 2 ~~i~ill~~g~~~~e---~--~~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~ 76 (188)
T 2fex_A 2 TRIAIALAQDFADWE---P--ALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWE 76 (188)
T ss_dssp CEEEEECCTTBCTTS---S--HHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHH
T ss_pred cEEEEEeCCCchHHH---H--HHHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCccc
Confidence 467777654322111 1 223566777 8888887764321 0 112221 1268999999995311
Q ss_pred CCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 77 PSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 77 p~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
. ...+ ....+++.+.++++||.+||-|.++|+.+
T Consensus 77 --~-~~~~---------------------------~l~~~l~~~~~~~k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 77 --K-GTAA---------------------------DLGGLVKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp --H-TCCC---------------------------CCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred --c-cccH---------------------------HHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 0 0000 12467788888999999999999999864
No 49
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=96.59 E-value=0.009 Score=55.14 Aligned_cols=95 Identities=15% Similarity=0.102 Sum_probs=58.2
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHC-CCEEEEEcCCCC-----------hhhhhhhcCCCCEEEECCCCCCCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY-GAVPAIVPRVSG-----------VHMLLDSFEPIHGVLLCEGEDIDP 77 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~-Ga~~vivp~~~~-----------~~~l~~~le~~DGVILsGG~didp 77 (426)
+++|+|+..+....- ++ ...++.+... |..+.++..... ...+.+..+.+|.||+|||.+.
T Consensus 3 m~kV~ill~~g~~~~---E~--~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~~~~~D~livpGG~~~-- 75 (206)
T 3f5d_A 3 LKKALFLILDQYADW---EG--VYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIGGDSW-- 75 (206)
T ss_dssp CEEEEEECCSSBCTT---TS--HHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECCBSCC--
T ss_pred ccEEEEEEcCCCcHH---HH--HHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhCCcCCCEEEEcCCCCh--
Confidence 567888865433221 11 1234556666 777766654321 0112222236899999999642
Q ss_pred CcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 78 SLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 78 ~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
.. . +...+.+++.+.++++||.+||-|-++|+.+
T Consensus 76 ~~--~---------------------------~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 76 SN--D---------------------------NKKLLHFVKTAFQKNIPIAAICGAVDFLAKN 109 (206)
T ss_dssp CC--C---------------------------CHHHHHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred hh--c---------------------------CHHHHHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence 11 1 1223567888888999999999999999864
No 50
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=96.39 E-value=0.016 Score=53.46 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava 140 (426)
.+.+++.+.++++||.+||-|-.+|+.+
T Consensus 94 l~~~l~~~~~~gk~iaaiC~G~~~La~a 121 (212)
T 3efe_A 94 ILERIGQALKIGTIVAAICGATDALANM 121 (212)
T ss_dssp HHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence 4678888888999999999999999864
No 51
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=96.11 E-value=0.017 Score=55.03 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 112 IELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 112 ~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
....+++.+.++++||-+||-|-.+|+.+
T Consensus 126 ~l~~~l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 126 HLQNIAQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred HHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence 34678899999999999999999998764
No 52
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=96.05 E-value=0.009 Score=55.15 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 112 IELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 112 ~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
....+++.+.++++||.+||-|-++|+.+
T Consensus 110 ~l~~~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 110 TLQYVLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp HHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HHHHHHHHHHHCCCEEEEEChHHHHHHHc
Confidence 34678888889999999999999998754
No 53
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=95.80 E-value=0.022 Score=54.03 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 112 IELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 112 ~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
....+++.+.++++||-+||-|-.+|+.+
T Consensus 119 ~l~~~l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 119 NLQDIASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 34678899999999999999999999765
No 54
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=95.79 E-value=0.023 Score=53.51 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 112 IELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 112 ~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
....+++.+.++++||.+||-|-.+|+.+
T Consensus 119 ~l~~~l~~~~~~gk~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 119 DLQDIASEIYANGGVVAAVCHGPAIFDGL 147 (243)
T ss_dssp HHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence 34678899999999999999999988765
No 55
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=95.72 E-value=0.024 Score=57.04 Aligned_cols=98 Identities=17% Similarity=0.261 Sum_probs=61.4
Q ss_pred CCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh----------------------------hhhhhh
Q 014368 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV----------------------------HMLLDS 60 (426)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~----------------------------~~l~~~ 60 (426)
.+++|+|+...... ..--..-++.+..+|+.+.++..+... ..+.+.
T Consensus 204 ~~~ki~ill~dg~~-----~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~ 278 (396)
T 3uk7_A 204 ANKRILFLCGDYME-----DYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDL 278 (396)
T ss_dssp CCCEEEEECCTTEE-----HHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGC
T ss_pred ccceEEEEecCCCc-----chhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHC
Confidence 34678887654321 111223456788899999887543211 011111
Q ss_pred -cCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHH
Q 014368 61 -FEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNV 139 (426)
Q Consensus 61 -le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLav 139 (426)
.+.+|.||+|||.+ +.. + ..+.....+++.+.++++||.+||-|.++|+.
T Consensus 279 ~~~~~D~livpGg~~--~~~---------------~------------~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~ 329 (396)
T 3uk7_A 279 VSSSYDALVIPGGRA--PEY---------------L------------ALNEHVLNIVKEFMNSEKPVASICHGQQILAA 329 (396)
T ss_dssp CGGGCSEEEECCBSH--HHH---------------H------------TTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHH
T ss_pred CcccCCEEEECCCcc--hhh---------------h------------ccCHHHHHHHHHHHHCCCEEEEEchHHHHHHH
Confidence 24689999999952 110 0 01223467888888999999999999999987
Q ss_pred H
Q 014368 140 A 140 (426)
Q Consensus 140 a 140 (426)
+
T Consensus 330 a 330 (396)
T 3uk7_A 330 A 330 (396)
T ss_dssp T
T ss_pred c
Confidence 5
No 56
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=95.72 E-value=0.048 Score=59.02 Aligned_cols=105 Identities=12% Similarity=-0.017 Sum_probs=61.4
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCC--hh-hhhh-hcCCCCEEEECCCCCCCCCcccccCCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG--VH-MLLD-SFEPIHGVLLCEGEDIDPSLYEAETSN 86 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~--~~-~l~~-~le~~DGVILsGG~didp~~y~~~~~~ 86 (426)
.+|+|+..... +-+.-.....++|+++|+.+++|-...+ .+ .+.. ....+|+|||+||..-.+..-+. +..
T Consensus 538 rKVaILvadG~----fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~-~d~ 612 (688)
T 3ej6_A 538 LRVGVLSTTKG----GSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGA-MSP 612 (688)
T ss_dssp CEEEEECCSSS----SHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTT-CCT
T ss_pred CEEEEEccCCC----ccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccc-hhh
Confidence 36777765431 1111223356789999999998864321 11 1111 11358999999995211100000 000
Q ss_pred CChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 87 ~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
...+.-.+.+++.+.+.+|||-.||-|-++|..+
T Consensus 613 --------------------Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 613 --------------------LFPAGRPSQILTDGYRWGKPVAAVGSAKKALQSI 646 (688)
T ss_dssp --------------------TSCTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred --------------------hccCHHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence 0112223578999999999999999999999764
No 57
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=95.72 E-value=0.012 Score=64.34 Aligned_cols=95 Identities=11% Similarity=0.009 Sum_probs=60.7
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCC-----------hh-hhhhh-cCCCCEEEECCCCCCCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG-----------VH-MLLDS-FEPIHGVLLCEGEDIDP 77 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~-----------~~-~l~~~-le~~DGVILsGG~didp 77 (426)
.+|+|+.......-. -.+.++.|+++|+.+.+|-.... .+ .+.+. ...+|+|||+|| + +
T Consensus 601 rKVaILlaDGfEe~E-----l~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g--~ 672 (753)
T 3ttv_A 601 RVVAILLNDEVRSAD-----LLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-N--I 672 (753)
T ss_dssp CEEEEECCTTCCHHH-----HHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-C--G
T ss_pred CEEEEEecCCCCHHH-----HHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-C--h
Confidence 467887654332111 23456789999999988864321 01 11111 124899999999 3 2
Q ss_pred CcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 78 SLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 78 ~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
... ..+...+.+++.+.+.++||-+||-|-++|..+
T Consensus 673 ~~L---------------------------r~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 673 ADI---------------------------ADNGDANYYLMEAYKHLKPIALAGDARKFKATI 708 (753)
T ss_dssp GGT---------------------------TTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred HHh---------------------------hhCHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence 211 112334678899999999999999999999764
No 58
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=95.62 E-value=0.017 Score=58.10 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=61.4
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh----------------------------hhhhhh-
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV----------------------------HMLLDS- 60 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~----------------------------~~l~~~- 60 (426)
+++|+|+..... ...--...++.++++|+.+.++.....+ ..+.+.
T Consensus 12 ~~kv~ill~dg~-----e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 86 (396)
T 3uk7_A 12 SRTVLILCGDYM-----EDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVD 86 (396)
T ss_dssp CCEEEEECCTTE-----EHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCC
T ss_pred CCeEEEEeCCCc-----cHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcC
Confidence 367888764322 1111223467788999999888653211 011111
Q ss_pred cCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 61 FEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 61 le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
.+.+|.||+|||.+ +.. ...+.....+++.+.++++||.+||-|.++|+.+
T Consensus 87 ~~~~D~livpGG~~--~~~---------------------------~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 87 LSKYDGLVIPGGRA--PEY---------------------------LALTASVVELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp GGGCSEEEECCBSH--HHH---------------------------HTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred cccCCEEEECCCcc--hhh---------------------------cccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 24689999999942 110 0012234678888899999999999999999876
No 59
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=95.57 E-value=0.0078 Score=58.89 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=62.2
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCC-EEEEEcCCC----ChhhhhhhcCCCCEEEECCCCCCCCCcccccCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA-VPAIVPRVS----GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETS 85 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga-~~vivp~~~----~~~~l~~~le~~DGVILsGG~didp~~y~~~~~ 85 (426)
|+|+++..-+... +...+.|.+++.+.|+ .+.+++... +..++.+.+..+|+|+++||. ...+-
T Consensus 57 ~~I~~IptAs~~~----~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGn---t~~l~---- 125 (291)
T 3en0_A 57 AIIGIIPSASREP----LLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGD---QLRLC---- 125 (291)
T ss_dssp CEEEEECTTCSSH----HHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSC---HHHHH----
T ss_pred CeEEEEeCCCCCh----HHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCC---HHHHH----
Confidence 7788876433211 1224556788899999 555665421 123344556779999999993 22111
Q ss_pred CCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcC-CCEEEEehHHHHHHH
Q 014368 86 NLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERN-IPYLGICRGSQVLNV 139 (426)
Q Consensus 86 ~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~-iPILGIClG~QlLav 139 (426)
.+ .++.-...+++.+.+++ +|+.|+|-|.-+++.
T Consensus 126 -------~~-------------l~~t~l~~~L~~~~~~G~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 126 -------GL-------------LADTPLMDRIRQRVHNGEISLAGTSAGAAVMGH 160 (291)
T ss_dssp -------HH-------------HTTCHHHHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred -------HH-------------HHhCCHHHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence 11 12233457888888899 999999999988754
No 60
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=95.51 E-value=0.013 Score=53.83 Aligned_cols=98 Identities=14% Similarity=0.110 Sum_probs=59.4
Q ss_pred CCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC-Ch-----------h-hhhhh-cCCCCEEEECCCCC
Q 014368 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GV-----------H-MLLDS-FEPIHGVLLCEGED 74 (426)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~-----------~-~l~~~-le~~DGVILsGG~d 74 (426)
++++|+|+.......- + -..-++.+..+|..+.++.... .. + .+.+. .+.+|.||+|||..
T Consensus 8 m~~~v~ill~~g~~~~---e--~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~ 82 (208)
T 3ot1_A 8 MSKRILVPVAHGSEEM---E--TVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVG 82 (208)
T ss_dssp -CCEEEEEECTTCCHH---H--HHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHH
T ss_pred cCCeEEEEECCCCcHH---H--HHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCch
Confidence 3467888865432211 1 1224567888898888776542 11 0 12221 13689999999941
Q ss_pred CCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHH-HHHHH
Q 014368 75 IDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS-QVLNV 139 (426)
Q Consensus 75 idp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~-QlLav 139 (426)
.+. +...+.....+++.+.++++||.+||-|- .+|+.
T Consensus 83 -~~~---------------------------~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~ 120 (208)
T 3ot1_A 83 -GAQ---------------------------AFADSTALLALIDAFSQQGKLVAAICATPALVFAK 120 (208)
T ss_dssp -HHH---------------------------HHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTT
T ss_pred -HHH---------------------------HHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHH
Confidence 000 00112334678888899999999999998 78865
No 61
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=95.42 E-value=0.01 Score=52.58 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 111 SIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 111 ~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
.....+++.+.++++||.+||-|.++|+.+
T Consensus 91 ~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 120 (175)
T 3cne_A 91 VDLMEVIKTFGEKGKMMIGHCAGAMMFDFT 120 (175)
T ss_dssp HHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 334678888889999999999999999875
No 62
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=95.34 E-value=0.018 Score=54.01 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 113 e~~lir~ale~~iPILGIClG~QlLava 140 (426)
.+.+++.+.+++++|.+||-|-.+|+.+
T Consensus 86 l~~~lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 86 ALAFIRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp HHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred HHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 4678888888999999999999999764
No 63
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=94.80 E-value=0.035 Score=55.90 Aligned_cols=97 Identities=15% Similarity=0.163 Sum_probs=59.4
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh-----h---hh-----hhhc--CCCCEEEECCCCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-----H---ML-----LDSF--EPIHGVLLCEGED 74 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-----~---~l-----~~~l--e~~DGVILsGG~d 74 (426)
+.+|+|+..+... ..--..-++.+..+|..+.++...... . .+ .+.+ ..+|.||+|||.+
T Consensus 10 mkkV~ILl~dgf~-----~~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g 84 (365)
T 3fse_A 10 KKKVAILIEQAVE-----DTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMA 84 (365)
T ss_dssp -CEEEEECCTTBC-----HHHHHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTH
T ss_pred ceEEEEEECCCCc-----HHHHHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcc
Confidence 4578887654321 111123456788889888877543221 0 01 1111 2489999999952
Q ss_pred CCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 75 IDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 75 idp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
+.. ...+.....+++.+.++++||.+||-|-.+|+.+
T Consensus 85 --~~~---------------------------l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 85 --PDK---------------------------MRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG 121 (365)
T ss_dssp --HHH---------------------------HTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred --hhh---------------------------ccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence 110 0012234678888889999999999999999864
No 64
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=94.39 E-value=0.059 Score=58.77 Aligned_cols=98 Identities=12% Similarity=0.112 Sum_probs=61.6
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCC-----------h-hhhhhh-cCCCCEEEECCCC-CCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG-----------V-HMLLDS-FEPIHGVLLCEGE-DID 76 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~-----------~-~~l~~~-le~~DGVILsGG~-did 76 (426)
.+|+|+...... ..--..-++.+..+|+.+.++..... . ..+.+. ...+|+|||+||. +.+
T Consensus 535 rkVaILl~dGfe-----~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~ 609 (715)
T 1sy7_A 535 RRVAIIIADGYD-----NVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAE 609 (715)
T ss_dssp CEEEEECCTTBC-----HHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHH
T ss_pred CEEEEEEcCCCC-----HHHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccHh
Confidence 467887654321 11112346678889999988864321 0 111111 1358999999993 210
Q ss_pred CCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHHhC
Q 014368 77 PSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACG 142 (426)
Q Consensus 77 p~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava~G 142 (426)
+...+...+.+++.+.++++||.+||-|-.+|+.++|
T Consensus 610 -----------------------------~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlG 646 (715)
T 1sy7_A 610 -----------------------------TLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIA 646 (715)
T ss_dssp -----------------------------HHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred -----------------------------hhccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccC
Confidence 0111233467888999999999999999999998765
No 65
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=94.16 E-value=0.097 Score=48.04 Aligned_cols=29 Identities=14% Similarity=0.014 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 112 IELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 112 ~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
..+.+++.+.+++++|.+||-|-.+|+.+
T Consensus 96 ~l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 96 ALFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp HHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 34678888889999999999999999876
No 66
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=94.00 E-value=0.1 Score=56.59 Aligned_cols=113 Identities=13% Similarity=0.107 Sum_probs=62.6
Q ss_pred cEEEEEcc--CcCCcccccccchhHHHHHHHHCCCEEEEEcCCCC--hh-hhhh-hcCCCCEEEECCCCCCCCCcccccC
Q 014368 11 PRVLIVSR--RSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG--VH-MLLD-SFEPIHGVLLCEGEDIDPSLYEAET 84 (426)
Q Consensus 11 P~igI~~~--~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~--~~-~l~~-~le~~DGVILsGG~didp~~y~~~~ 84 (426)
.+|+|+.. .... ..-....+++|+++|+.+++|-.... .+ .+.+ ....+|+|||+||. +.+|+...
T Consensus 530 ~kVaIL~a~~dGfe-----~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~---~g~~~~~~ 601 (688)
T 2iuf_A 530 LKVGLLASVNKPAS-----IAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGA---EGLFGADS 601 (688)
T ss_dssp CEEEEECCTTCHHH-----HHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTC---GGGCCTTT
T ss_pred CEEEEEecCCCCCc-----HHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCC---cccccccc
Confidence 46888765 2221 11223456789999999998865321 11 1111 12359999999994 12111000
Q ss_pred CCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 85 SNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 85 ~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
. ++ +. ...+..-....+.-.+.+++.+.+.+|||-.||-|-++|..+
T Consensus 602 ~-~~-~~-------~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 602 F-TV-EP-------SAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp T-TC-CC-------CTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred c-cc-cc-------ccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence 0 00 00 000000011123334678999999999999999999988754
No 67
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=93.99 E-value=0.067 Score=50.95 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 112 IELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 112 ~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
..+.+++.+.+++++|.+||-|-.+|+.+
T Consensus 105 ~l~~~Lr~~~~~gk~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 105 ETLAFMADRGARAKYITSVCSGSLILGAA 133 (253)
T ss_dssp HHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred HHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 34678888888999999999999998764
No 68
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=93.92 E-value=0.068 Score=48.83 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 114 LRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 114 ~~lir~ale~~iPILGIClG~QlLava 140 (426)
+.+++.+.+++++|.+||-|-.+|+.+
T Consensus 91 ~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 91 DRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp HHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 467788888999999999999999875
No 69
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=92.54 E-value=0.042 Score=50.61 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 112 IELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 112 ~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
..+.+++.+.+++++|.+||-|-.+|+.+
T Consensus 85 ~~~~~l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 85 NFINFIGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp HHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred HHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence 34678888888999999999999999864
No 70
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=92.40 E-value=0.065 Score=52.05 Aligned_cols=53 Identities=6% Similarity=0.081 Sum_probs=38.1
Q ss_pred cCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehHHHHHHHH
Q 014368 61 FEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (426)
Q Consensus 61 le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG~QlLava 140 (426)
.+.+|+||||||.+ +. + +...+.....+++++.++++||.+||-|-.+|+.+
T Consensus 143 ~~~yD~livPGG~g--~~-~-------------------------~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a 194 (291)
T 1n57_A 143 DSEYAAIFVPGGHG--AL-I-------------------------GLPESQDVAAALQWAIKNDRFVISLCHGPAAFLAL 194 (291)
T ss_dssp TCSEEEEEECCSGG--GG-S-------------------------SGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGG
T ss_pred cccCCEEEecCCcc--hh-h-------------------------hhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhh
Confidence 46799999999953 11 0 01112334678899999999999999999987665
Q ss_pred h
Q 014368 141 C 141 (426)
Q Consensus 141 ~ 141 (426)
.
T Consensus 195 ~ 195 (291)
T 1n57_A 195 R 195 (291)
T ss_dssp T
T ss_pred c
Confidence 3
No 71
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=90.34 E-value=0.55 Score=41.91 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=44.9
Q ss_pred CCCCCCCCCCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCC-CChhhh----hhhcC--CCCEEEECCCC
Q 014368 1 MAAHDLSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHML----LDSFE--PIHGVLLCEGE 73 (426)
Q Consensus 1 ~~~~~~~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l----~~~le--~~DGVILsGG~ 73 (426)
|..+..+.-+|+++|++-.+. ..+..+.-+.....++.+.|+.++..... .+.+.| .+.++ .+|-||.+||-
T Consensus 1 ~~~~~~~~~~~~v~Ii~tGdE-~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~ 79 (172)
T 1mkz_A 1 MSQVSTEFIPTRIAILTVSNR-RGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGT 79 (172)
T ss_dssp --CCCSSCCCCEEEEEEECSS-CCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCC
T ss_pred CCCCCCCCCCCEEEEEEEeCC-CCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 555555556789999986543 23344443444566788899987633221 233333 33344 38999999997
Q ss_pred CCCC
Q 014368 74 DIDP 77 (426)
Q Consensus 74 didp 77 (426)
++.+
T Consensus 80 g~~~ 83 (172)
T 1mkz_A 80 GLTE 83 (172)
T ss_dssp SSST
T ss_pred CCCC
Confidence 6443
No 72
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=88.80 E-value=0.5 Score=42.71 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=17.5
Q ss_pred HHHHHHHHHH-cCCCEEEEehHHHH
Q 014368 113 ELRLAKLCLE-RNIPYLGICRGSQV 136 (426)
Q Consensus 113 e~~lir~ale-~~iPILGIClG~Ql 136 (426)
...+++.+.+ .++|+-.||-|.-+
T Consensus 95 l~~~l~~~~~~~~k~iaaiC~g~~l 119 (194)
T 4gdh_A 95 VQQVVKEFYKKPNKWIGMICAGTLT 119 (194)
T ss_dssp HHHHHHHHTTCTTCEEEEEGGGGHH
T ss_pred HHHHHHHhhhcCCceEEeecccccc
Confidence 3567777654 47899999999843
No 73
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=87.03 E-value=0.98 Score=40.04 Aligned_cols=75 Identities=20% Similarity=0.195 Sum_probs=41.0
Q ss_pred CCCCCCCC---CCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCC-CChh----hhhhhcC--CCCEEEEC
Q 014368 1 MAAHDLSV---ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVH----MLLDSFE--PIHGVLLC 70 (426)
Q Consensus 1 ~~~~~~~~---~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~----~l~~~le--~~DGVILs 70 (426)
|+.+++.. -+|+++|++-.+.- .+..+.-+.....++.+.|+.++..... .+.+ .+.+.++ .+|-||.+
T Consensus 1 ~~~~~~~~~v~~~~rv~Ii~tGdEl-g~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 79 (169)
T 1y5e_A 1 MSVTEHKKQAPKEVRCKIVTISDTR-TEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTN 79 (169)
T ss_dssp -----------CCCEEEEEEECSSC-CTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEE
T ss_pred CCccccccccccCCEEEEEEEcCcc-CeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 44444442 35899999855432 3334443344556788899987633322 2333 3445555 79999999
Q ss_pred CCCCCC
Q 014368 71 EGEDID 76 (426)
Q Consensus 71 GG~did 76 (426)
||-++.
T Consensus 80 GG~g~g 85 (169)
T 1y5e_A 80 GGTGIT 85 (169)
T ss_dssp CCCSSS
T ss_pred CCCCCC
Confidence 997544
No 74
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=85.56 E-value=0.55 Score=41.69 Aligned_cols=66 Identities=14% Similarity=0.246 Sum_probs=39.2
Q ss_pred CCCcEEEEEccCc-CCcccccccchhHHHHHHHHCCCEEE---EEcCCCChhhh----hhhcC-CCCEEEECCCCCCC
Q 014368 8 VILPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPA---IVPRVSGVHML----LDSFE-PIHGVLLCEGEDID 76 (426)
Q Consensus 8 ~~~P~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~v---ivp~~~~~~~l----~~~le-~~DGVILsGG~did 76 (426)
..+|+|+|++-.+ ...++..+.-......++.+.|+.++ ++|- + +.+ .+.++ .+|-||.+||.++.
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~D--d-~~i~~al~~a~~~~~DlVittGG~s~g 79 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVAD--G-SPVGEALRKAIDDDVDVILTSGGTGIA 79 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECS--S-HHHHHHHHHHHHTTCSEEEEESCCSSS
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCC--H-HHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence 3468999998654 22333444434445567888999886 4553 2 333 33343 79999999997654
No 75
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=82.76 E-value=0.98 Score=43.20 Aligned_cols=84 Identities=17% Similarity=0.119 Sum_probs=48.3
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh------h--hhhhhcCCCCEEEECCCCCCCCCccc
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV------H--MLLDSFEPIHGVLLCEGEDIDPSLYE 81 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~------~--~l~~~le~~DGVILsGG~didp~~y~ 81 (426)
+.+|+|+.++... .. .-.....++++.+.|..+++.+..... . ......+.+|.||..|| |
T Consensus 5 mkki~ii~np~~~--~~-~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~GG---D----- 73 (292)
T 2an1_A 5 FKCIGIVGHPRHP--TA-LTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGG---D----- 73 (292)
T ss_dssp CCEEEEECC----------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSC---H-----
T ss_pred CcEEEEEEcCCCH--HH-HHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcccCCCEEEEEcC---c-----
Confidence 4689999987532 11 123445678899999988776421000 0 00111235899999999 2
Q ss_pred ccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEEEEehH
Q 014368 82 AETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRG 133 (426)
Q Consensus 82 ~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPILGIClG 133 (426)
...+..++.+...++|+|||=.|
T Consensus 74 -----------------------------GT~l~a~~~~~~~~~P~lGI~~G 96 (292)
T 2an1_A 74 -----------------------------GNMLGAARTLARYDINVIGINRG 96 (292)
T ss_dssp -----------------------------HHHHHHHHHHTTSSCEEEEBCSS
T ss_pred -----------------------------HHHHHHHHHhhcCCCCEEEEECC
Confidence 12244556655668999999655
No 76
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=82.06 E-value=0.99 Score=40.57 Aligned_cols=67 Identities=10% Similarity=-0.002 Sum_probs=40.7
Q ss_pred CCcEEEEEccCc-CCcccccccchhHHHHHHHHCCCEEEEEcCC-CChhhh----hhhcCCCCEEEECCCCCC
Q 014368 9 ILPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHML----LDSFEPIHGVLLCEGEDI 75 (426)
Q Consensus 9 ~~P~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l----~~~le~~DGVILsGG~di 75 (426)
+.|+++|++-.+ ...++..+.-+....+++.+.|+.++.+... .+.+.| .+.++.+|-||.+||-++
T Consensus 2 ~~~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~ 74 (172)
T 3kbq_A 2 NAKNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGP 74 (172)
T ss_dssp --CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSS
T ss_pred CCCEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcC
Confidence 458889887554 2234444444445566788999988643322 233333 344456899999999654
No 77
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=81.88 E-value=1.4 Score=39.93 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=42.9
Q ss_pred CCcEEEEEccCc-CCcccccccchhHHHHHHHHCCCEEEEEcCC-CChhhh----hhhc-CCCCEEEECCCCCCCC
Q 014368 9 ILPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHML----LDSF-EPIHGVLLCEGEDIDP 77 (426)
Q Consensus 9 ~~P~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l----~~~l-e~~DGVILsGG~didp 77 (426)
-+|+|+|++..+ ...++ .+.-+.....++.+.|+.++..... .+.+.+ .+.+ +.+|-||.+||.++.+
T Consensus 29 ~~~rvaIistGdEl~~G~-~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~g~ 103 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGD-EDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTP 103 (185)
T ss_dssp CCEEEEEEEECHHHHTTC-CCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCSSST
T ss_pred CCCEEEEEEECcccCCCC-cCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC
Confidence 468999998654 22344 5554455566788999988633322 233333 3434 5799999999976543
No 78
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=81.86 E-value=1.5 Score=39.28 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=42.3
Q ss_pred CCcEEEEEccCcC-C----c-ccccccchhHHHHHHHHCCCEEEEEcCC-CChhhh----hhhcCC--CCEEEECCCCCC
Q 014368 9 ILPRVLIVSRRSV-R----K-NKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHML----LDSFEP--IHGVLLCEGEDI 75 (426)
Q Consensus 9 ~~P~igI~~~~~~-~----~-~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l----~~~le~--~DGVILsGG~di 75 (426)
.+|+|+|++..+. . . ++..+.-......++.+.|+.++..... .+.+.| .+.++. +|-||.+||.++
T Consensus 14 ~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s~ 93 (178)
T 2pjk_A 14 KSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp CCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred CCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 3689999986542 1 2 3444443444556788999988743322 233433 344555 899999999765
Q ss_pred CC
Q 014368 76 DP 77 (426)
Q Consensus 76 dp 77 (426)
.+
T Consensus 94 g~ 95 (178)
T 2pjk_A 94 SP 95 (178)
T ss_dssp ST
T ss_pred CC
Confidence 43
No 79
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=80.05 E-value=0.95 Score=39.92 Aligned_cols=67 Identities=15% Similarity=0.000 Sum_probs=39.2
Q ss_pred CcEEEEEccCc-CCcccccccchhHHHHHHHHCCCEEEEEcCC-CChh----hhhhhcC--CCCEEEECCCCCCC
Q 014368 10 LPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVH----MLLDSFE--PIHGVLLCEGEDID 76 (426)
Q Consensus 10 ~P~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~----~l~~~le--~~DGVILsGG~did 76 (426)
+|+++|++-.+ ...++..+.-......++.+.|+.++..... .+.+ .+.+.++ .+|-||.+||-++.
T Consensus 1 ~~~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g 75 (164)
T 2is8_A 1 MFRVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLA 75 (164)
T ss_dssp CEEEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred CcEEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCC
Confidence 47888887543 2233334443344455677889877633221 2333 3334444 68999999997543
No 80
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=79.93 E-value=0.36 Score=45.35 Aligned_cols=20 Identities=35% Similarity=0.399 Sum_probs=16.2
Q ss_pred HHcCC-CEEEEehHHHHHHHH
Q 014368 121 LERNI-PYLGICRGSQVLNVA 140 (426)
Q Consensus 121 le~~i-PILGIClG~QlLava 140 (426)
.++++ +|.+||-|-.+|+.+
T Consensus 108 ~~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 108 LDPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp CCTTTCEEEEETTHHHHHHHT
T ss_pred hCCCCCEEEEEcHHHHHHHHc
Confidence 34556 999999999999865
No 81
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=79.40 E-value=4.2 Score=39.33 Aligned_cols=37 Identities=8% Similarity=0.060 Sum_probs=24.3
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPR 50 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~ 50 (426)
.+|+|+.++.... ... .....++++.+.|..+++...
T Consensus 5 ~ki~iI~n~~~~~--~~~-~~~~l~~~L~~~g~~v~~~~~ 41 (307)
T 1u0t_A 5 RSVLLVVHTGRDE--ATE-TARRVEKVLGDNKIALRVLSA 41 (307)
T ss_dssp CEEEEEESSSGGG--GSH-HHHHHHHHHHTTTCEEEEEC-
T ss_pred CEEEEEEeCCCHH--HHH-HHHHHHHHHHHCCCEEEEecc
Confidence 5789998875421 112 234567889999998877653
No 82
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=79.38 E-value=2.4 Score=40.92 Aligned_cols=47 Identities=11% Similarity=0.079 Sum_probs=33.2
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG 72 (426)
+|+|+.+.+.. .+...+++.+.|..+.+.+... . .++.+|-||.-||
T Consensus 31 ki~iv~~~~~~--------~~~l~~~L~~~g~~v~~~~~~~--~----~~~~~DlvIvlGG 77 (278)
T 1z0s_A 31 RAAVVYKTDGH--------VKRIEEALKRLEVEVELFNQPS--E----ELENFDFIVSVGG 77 (278)
T ss_dssp EEEEEESSSTT--------HHHHHHHHHHTTCEEEEESSCC--G----GGGGSSEEEEEEC
T ss_pred EEEEEeCCcHH--------HHHHHHHHHHCCCEEEEccccc--c----ccCCCCEEEEECC
Confidence 48888876442 4456788999999888765321 1 2346899999999
No 83
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=78.68 E-value=10 Score=34.72 Aligned_cols=61 Identities=5% Similarity=-0.060 Sum_probs=40.8
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhh-----cCCCCEEEECCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDS-----FEPIHGVLLCEG 72 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~-----le~~DGVILsGG 72 (426)
..+|||+... ..+.|..-+-...-+.+.+.|..++++....+.+...+. -..+||||+.+.
T Consensus 15 ~~~Igvi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 80 (298)
T 3tb6_A 15 NKTIGVLTTY--ISDYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPT 80 (298)
T ss_dssp CCEEEEEESC--SSSTTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCS
T ss_pred CceEEEEeCC--CCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecc
Confidence 3688888654 234555556666777888999999988765554322111 147999999876
No 84
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=76.44 E-value=10 Score=34.64 Aligned_cols=61 Identities=7% Similarity=-0.016 Sum_probs=39.6
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCEG 72 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----e~~DGVILsGG 72 (426)
..+|||+.... .+.+..-+-...-+.+.+.|..+++.....+.+...+.+ ..+||||+.+.
T Consensus 5 ~~~Ig~i~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 70 (291)
T 3l49_A 5 GKTIGITAIGT--DHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLG 70 (291)
T ss_dssp TCEEEEEESCC--SSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESS
T ss_pred CcEEEEEeCCC--CChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 35788886532 244555556667778889999999887655532211111 37999999865
No 85
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=76.10 E-value=3.6 Score=39.30 Aligned_cols=61 Identities=11% Similarity=0.089 Sum_probs=41.6
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhcC---CCCEEEECC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSFE---PIHGVLLCE 71 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~le---~~DGVILsG 71 (426)
+++||++.... ..+.|+..+....-+++.+.|..++++....+.+. +...+. .+||||+.+
T Consensus 3 ~~~Ig~i~p~~-~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~ 70 (350)
T 3h75_A 3 LTSVVFLNPGN-STETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN 70 (350)
T ss_dssp CCEEEEEECSC-TTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC
T ss_pred CCEEEEECCCC-CCChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 46888887542 22356666667777888889999988876555432 333333 799999985
No 86
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=75.87 E-value=2.2 Score=38.63 Aligned_cols=68 Identities=21% Similarity=0.220 Sum_probs=38.1
Q ss_pred CcEEEEEccCc-CCcccccccchhHHHHHHHH---CCCEEEEEcCC-CChhh----hhhhcC--CCCEEEECCCCCCCC
Q 014368 10 LPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVG---YGAVPAIVPRV-SGVHM----LLDSFE--PIHGVLLCEGEDIDP 77 (426)
Q Consensus 10 ~P~igI~~~~~-~~~~~~~~~v~~~yl~~l~~---~Ga~~vivp~~-~~~~~----l~~~le--~~DGVILsGG~didp 77 (426)
+|+++|++-.+ .......+.-+.....++.+ .|+.++..... .+.+. +.+.++ .+|-||.+||.++.+
T Consensus 14 ~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIttGGtg~g~ 92 (189)
T 1jlj_A 14 QIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGFAP 92 (189)
T ss_dssp CCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSST
T ss_pred CCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEcCCCCCCC
Confidence 58999998544 22223333322333445665 79887643322 23333 334444 689999999976543
No 87
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=74.93 E-value=1.4 Score=38.86 Aligned_cols=68 Identities=10% Similarity=0.066 Sum_probs=37.3
Q ss_pred CCcEEEEEccCc-CCcccccccchhHHHHH----HHHCCCEEEEEcCC-CChhh----hhhhcC-CCCEEEECCCCCCC
Q 014368 9 ILPRVLIVSRRS-VRKNKFVDFVGEYHLDL----IVGYGAVPAIVPRV-SGVHM----LLDSFE-PIHGVLLCEGEDID 76 (426)
Q Consensus 9 ~~P~igI~~~~~-~~~~~~~~~v~~~yl~~----l~~~Ga~~vivp~~-~~~~~----l~~~le-~~DGVILsGG~did 76 (426)
+.|+++|++-.+ ...++..+.-+....++ +.+.|+.++..... .+.+. +.+.++ .+|-||.+||-++.
T Consensus 4 m~~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittGG~g~~ 82 (167)
T 2g2c_A 4 MHIKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGGTGIR 82 (167)
T ss_dssp CEEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESCCSSS
T ss_pred CccEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence 558899987544 22333344333344556 77889877533221 23333 334444 49999999997543
No 88
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=74.46 E-value=8.9 Score=35.33 Aligned_cols=62 Identities=8% Similarity=0.018 Sum_probs=39.2
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChh---hhhhhc--CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVH---MLLDSF--EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~---~l~~~l--e~~DGVILsGG 72 (426)
.+|||+.......+.|..-+-...-+.+.+.|..+++.....+.+ .+.+.+ ..+||||+.+.
T Consensus 9 ~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 9 NVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp CEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred CEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecC
Confidence 578888654322235555556666677888999998876543322 222222 57999999864
No 89
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=74.19 E-value=3.1 Score=42.28 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=41.1
Q ss_pred CcEEEEEccCc-CC-------cccccccchhHHHHHHHHCCCEEEEEcCC-CChhhh----hhhcCCCCEEEECCCCCCC
Q 014368 10 LPRVLIVSRRS-VR-------KNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHML----LDSFEPIHGVLLCEGEDID 76 (426)
Q Consensus 10 ~P~igI~~~~~-~~-------~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l----~~~le~~DGVILsGG~did 76 (426)
+|+|+|++..+ .. .++..+.-......++.+.|+.++..... .+.+.+ .+.++.+|-||.+||.++.
T Consensus 177 ~~rv~iistGdEl~~~g~~~~~G~i~dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~~~DlvittGG~s~g 256 (411)
T 1g8l_A 177 KVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVG 256 (411)
T ss_dssp CCEEEEEEECTTEECTTSCCCSSCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEECSSSCSS
T ss_pred CCEEEEEEcCccccCCCCCCCCCcEEcCchHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhcCCEEEECCCCCCC
Confidence 58999998543 11 23444443344556788899988743322 233333 3344568999999997654
No 90
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=74.09 E-value=2.2 Score=38.18 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=37.3
Q ss_pred CCcEEEEEccCc-CCcccccccchhHHHHHHH---HCCCEEE--EEcCCCChh----hhhhhcC--CCCEEEECCCCCCC
Q 014368 9 ILPRVLIVSRRS-VRKNKFVDFVGEYHLDLIV---GYGAVPA--IVPRVSGVH----MLLDSFE--PIHGVLLCEGEDID 76 (426)
Q Consensus 9 ~~P~igI~~~~~-~~~~~~~~~v~~~yl~~l~---~~Ga~~v--ivp~~~~~~----~l~~~le--~~DGVILsGG~did 76 (426)
-+|+|+|++-.+ ...++..+.-+.....++. ..|+.+. ++| .+.+ .+.+.++ .+|-||.+||-++.
T Consensus 4 ~~~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v~~~iv~--Dd~~~I~~~l~~~~~~~~~DlVittGG~g~g 81 (178)
T 2pbq_A 4 KKAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEVEYRVIP--DERDLIEKTLIELADEKGCSLILTTGGTGPA 81 (178)
T ss_dssp -CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEEEEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred CCCEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEEEEEEcC--CCHHHHHHHHHHHHhcCCCCEEEECCCCCCC
Confidence 468999998544 2233333332333344455 6898763 333 2333 3334444 69999999997543
No 91
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=74.05 E-value=16 Score=33.41 Aligned_cols=60 Identities=5% Similarity=-0.085 Sum_probs=40.4
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----e~~DGVILsGG 72 (426)
.+|||+... ..+.+...+-...-+.+.+.|..++++....+.+...+.+ ..+||||+.+.
T Consensus 9 ~~Ig~i~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (293)
T 3l6u_A 9 NIVGFTIVN--DKHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTL 73 (293)
T ss_dssp CEEEEEESC--SCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred cEEEEEEec--CCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 678888754 2355555566667778889999999887665543221111 37999999865
No 92
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=73.53 E-value=8 Score=37.55 Aligned_cols=62 Identities=13% Similarity=0.044 Sum_probs=39.2
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCC--hhhhh-hh-cCCCCEEEECCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG--VHMLL-DS-FEPIHGVLLCEG 72 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~--~~~l~-~~-le~~DGVILsGG 72 (426)
+.+++|+.|+.+..++..... ....+++...|..+.+...... ...+. +. .+.+|.||..||
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~-~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GG 89 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKREL-PDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGG 89 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHH-HHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEEC
T ss_pred cceEEEEECCCCCCCchHHHH-HHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcC
Confidence 467999999877554432322 4467788889988777654332 11221 22 246899999999
No 93
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=73.46 E-value=2.2 Score=38.92 Aligned_cols=66 Identities=15% Similarity=0.083 Sum_probs=37.4
Q ss_pred CcEEEEEccCc-CCcccccccchhHHHHHHHHCCCE--EE---EEcCCCChh----hhhhhcC--CCCEEEECCCCCCCC
Q 014368 10 LPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAV--PA---IVPRVSGVH----MLLDSFE--PIHGVLLCEGEDIDP 77 (426)
Q Consensus 10 ~P~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~--~v---ivp~~~~~~----~l~~~le--~~DGVILsGG~didp 77 (426)
+|+++|++-.+ ...++..+.-+.....++.+.|+. ++ ++|- +.+ .+.+.++ .+|-||.+||-++.+
T Consensus 3 ~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~D--d~~~I~~al~~a~~~~~~DlVitTGGtg~g~ 80 (195)
T 1di6_A 3 TLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPD--EQAIIEQTLCELVDEMSCHLVLTTGGTGPAR 80 (195)
T ss_dssp CEEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEES--CHHHHHHHHHHHHHTSCCSEEEEESCCSSST
T ss_pred CCEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEECCCCCCCC
Confidence 68899987543 334444454444556678888876 32 4542 333 3334444 589999999976543
No 94
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=73.45 E-value=15 Score=33.03 Aligned_cols=60 Identities=5% Similarity=-0.134 Sum_probs=39.2
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhh---hh--cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLL---DS--FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~---~~--le~~DGVILsGG 72 (426)
.+|||+... ..+.|..-+-...-+.+.+.|..++++....+.+... +. -..+||||+.+.
T Consensus 3 ~~Igvi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 67 (272)
T 3o74_A 3 RTLGFILPD--LENPSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASC 67 (272)
T ss_dssp CEEEEEESC--TTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred eEEEEEeCC--CcChhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 367777644 2345555556667778889999999887655433211 11 147999999876
No 95
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=71.68 E-value=15 Score=33.87 Aligned_cols=61 Identities=7% Similarity=-0.038 Sum_probs=39.8
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCC--CChhh----hhhh-cCCCCEEEECCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV--SGVHM----LLDS-FEPIHGVLLCEG 72 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~--~~~~~----l~~~-le~~DGVILsGG 72 (426)
+.+|||+.... .+.|...+-...-+++.+.|..+++.... .+.+. +... -..+||||+.+.
T Consensus 3 ~~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 70 (297)
T 3rot_A 3 RDKYYLITHGS--QDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP 70 (297)
T ss_dssp CCEEEEECSCC--CSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred eEEEEEEecCC--CCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 35788887543 45566666677778888899999887754 23322 1111 147999999865
No 96
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=71.38 E-value=24 Score=32.15 Aligned_cols=60 Identities=10% Similarity=0.036 Sum_probs=38.3
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhh-cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDS-FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~-le~~DGVILsGG 72 (426)
.+|||+... ..+.|...+-....+++.+.|..+++.....+.+. +... -..+||||+.+.
T Consensus 3 ~~Ig~i~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (290)
T 2fn9_A 3 GKMAIVIST--LNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPT 67 (290)
T ss_dssp CEEEEEESC--SSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEeCC--CCChHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 578887643 23455555566667788889999888765444322 1111 147999999865
No 97
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=70.34 E-value=8.5 Score=34.77 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=38.0
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCC--CChhh----hhhhc-CC-CCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV--SGVHM----LLDSF-EP-IHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~--~~~~~----l~~~l-e~-~DGVILsGG 72 (426)
|+|||+... ..+.|...+-...-+.+.+.|..++++..+ .+.+. +...+ .. +||||+.+.
T Consensus 1 ~~Ig~i~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~ 68 (276)
T 3ksm_A 1 PKLLLVLKG--DSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPN 68 (276)
T ss_dssp CEEEEECSC--SSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCS
T ss_pred CeEEEEeCC--CCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 578888654 234555556666777888899998887632 33321 11111 25 999999875
No 98
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=70.06 E-value=16 Score=33.31 Aligned_cols=58 Identities=5% Similarity=-0.042 Sum_probs=37.7
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG 72 (426)
.+|||+... ..+.|+.-+-...-+.+.+.|..++++....+.+...+. .+||||+.+.
T Consensus 9 ~~Igvi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~--~vdgiI~~~~ 66 (277)
T 3cs3_A 9 NIIGVYLAD--YGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPEK--MVDGAIILDW 66 (277)
T ss_dssp CEEEEEECS--SCTTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCTT--TCSEEEEECT
T ss_pred cEEEEEecC--CCChhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhhc--cccEEEEecC
Confidence 578888643 234455555556667788899998887654443332222 7999999875
No 99
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=69.82 E-value=15 Score=33.44 Aligned_cols=62 Identities=15% Similarity=0.056 Sum_probs=40.2
Q ss_pred cEEEEEccCcC---CcccccccchhHHHHHHHHCCCEEEEEcCCCChhh---hhhhc--CCCCEEEECCC
Q 014368 11 PRVLIVSRRSV---RKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM---LLDSF--EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~---~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~---l~~~l--e~~DGVILsGG 72 (426)
.+|||+..... ..+.|...+-...-+.+.+.|..+++.....+.+. +.+.+ ..+||||+.+.
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 78 (292)
T 3k4h_A 9 KTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYS 78 (292)
T ss_dssp CEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCC
T ss_pred CEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 57888865421 34556666666677888899999888765443322 11111 47999999875
No 100
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=69.60 E-value=14 Score=34.44 Aligned_cols=61 Identities=8% Similarity=-0.065 Sum_probs=40.7
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCEG 72 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----e~~DGVILsGG 72 (426)
..+|||+.... .+.|+..+-...-+.+.+.|..+++.....+.+...+.+ ..+||||+.+.
T Consensus 3 ~~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~ 68 (330)
T 3uug_A 3 KGSVGIAMPTK--SSARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASI 68 (330)
T ss_dssp CCEEEEEECCS--SSTHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred CcEEEEEeCCC--cchHHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46788887542 345666666777788899999998887555543211111 37999999875
No 101
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=69.53 E-value=3.7 Score=41.46 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=36.5
Q ss_pred CcEEEEEccCc-CC---------cccccccchhHHHHHHHHCCCEEEEEcCC-CChhh----hhhhcCCCCEEEECCCCC
Q 014368 10 LPRVLIVSRRS-VR---------KNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHM----LLDSFEPIHGVLLCEGED 74 (426)
Q Consensus 10 ~P~igI~~~~~-~~---------~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~----l~~~le~~DGVILsGG~d 74 (426)
+|+|+|++..+ .. .++..+.-......++.+.|+.++..... .+.+. +.+.++.+|-||.+||.+
T Consensus 182 ~prv~IistGdEl~~~~g~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlvittGG~s 261 (396)
T 1wu2_A 182 KPKVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGSA 261 (396)
T ss_dssp CCEEEEEEECTTEESSCCHHHHHTTCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC----
T ss_pred CCEEEEEEcCcccccCCCCcccCCCcEecchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 58999998543 21 13334443334456788899988744322 23333 334455789999999975
Q ss_pred CCC
Q 014368 75 IDP 77 (426)
Q Consensus 75 idp 77 (426)
+++
T Consensus 262 ~g~ 264 (396)
T 1wu2_A 262 FGD 264 (396)
T ss_dssp ---
T ss_pred CCh
Confidence 543
No 102
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=69.00 E-value=3.2 Score=42.07 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=39.2
Q ss_pred CcEEEEEccCc-C-------CcccccccchhHHHHHHHHCCCEEEEEcCC-CChhh----hhhhcCCCCEEEECCCCCCC
Q 014368 10 LPRVLIVSRRS-V-------RKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHM----LLDSFEPIHGVLLCEGEDID 76 (426)
Q Consensus 10 ~P~igI~~~~~-~-------~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~----l~~~le~~DGVILsGG~did 76 (426)
+|+|+|++..+ . ..++..+.-......++.+.|+.++..... .+.+. +.+.++.+|-||.+||.++.
T Consensus 180 ~prv~IistGdEl~~~g~~~~~G~i~DsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s~g 259 (402)
T 1uz5_A 180 KPKVAVISTGNEIVPPGNELKPGQIYDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGASGG 259 (402)
T ss_dssp CCEEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC---
T ss_pred CCEEEEEEcCccccCCCCCCCCCcEEcchHHHHHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence 58999998543 2 133444443334456788889988744322 23333 33444568999999997543
No 103
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=68.91 E-value=16 Score=33.90 Aligned_cols=60 Identities=3% Similarity=-0.076 Sum_probs=39.3
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhh-----cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDS-----FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~-----le~~DGVILsGG 72 (426)
.+|||+... ..+.|..-+-...-+.+.+.|..+++.....+.+...+. -..+||||+.+.
T Consensus 3 ~~Igvi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 67 (313)
T 3m9w_A 3 VKIGMAIDD--LRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY 67 (313)
T ss_dssp CEEEEEESC--CSSSTTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred cEEEEEeCC--CCChHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 578887643 234455556666777888999999888765554321111 147999999876
No 104
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=68.28 E-value=9.2 Score=33.65 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=40.0
Q ss_pred CcEEEEEccCcC------CcccccccchhHHHHHHHHCCCEEEEEcCC-CChhhhhhh------cCCCCEEEECCCCCC
Q 014368 10 LPRVLIVSRRSV------RKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLLDS------FEPIHGVLLCEGEDI 75 (426)
Q Consensus 10 ~P~igI~~~~~~------~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~~~------le~~DGVILsGG~di 75 (426)
+++|+|++-.+. .....+|--+.+..++|.+.|+.++-.... .+.+.+.+. .+.+|-||.+||-++
T Consensus 15 ~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~ 93 (178)
T 3iwt_A 15 SLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp CCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred CCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 367888874431 223334554556677899999998743322 233333321 246899999999654
No 105
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=66.63 E-value=3.6 Score=41.85 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=40.1
Q ss_pred CcEEEEEccCc-CC-------cccccccchhHHHHHHHHCCCEEEEEcCC-CChhhh----hhhcCCCCEEEECCCCCCC
Q 014368 10 LPRVLIVSRRS-VR-------KNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHML----LDSFEPIHGVLLCEGEDID 76 (426)
Q Consensus 10 ~P~igI~~~~~-~~-------~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l----~~~le~~DGVILsGG~did 76 (426)
+|+|+|++..+ .. .++..+.-......++.+.|+.++.+... .+.+.+ .+.++.+|-||.+||.++.
T Consensus 181 ~prv~IistGdEl~~~g~~~~~G~i~dsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s~g 260 (419)
T 2fts_A 181 FPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVSMG 260 (419)
T ss_dssp CCCEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEEESCCSSS
T ss_pred CCEEEEEEechhccCCCCCCCCCcEecCchHHHHHHHHHCCCEEEEEeecCCCHHHHHHHHHHHHhcCCEEEEcCCCcCC
Confidence 58999998543 11 23444443333455677899988744332 233333 3344568999999997543
No 106
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=66.53 E-value=8.1 Score=32.61 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=44.2
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcC--CCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCccccchh
Q 014368 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFE--PIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEK 109 (426)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le--~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~r 109 (426)
+.+++.+...-...+|+|-+.. +.+...++ ++-+||||||-.+++
T Consensus 42 ~~~~~~~~~~~~~l~I~~G~r~-~~~l~a~~~~~~~~iIlt~g~~~~~-------------------------------- 88 (139)
T 2ioj_A 42 QSALRYLREARNAALVTGGDRS-DLLLTALEMPNVRCLILTGNLEPVQ-------------------------------- 88 (139)
T ss_dssp HHHHHHHHTCSSEEEEEETTCH-HHHHHHTTCTTEEEEEEETTCCCCH--------------------------------
T ss_pred HHHHHHHhcCCCEEEEEcCCHH-HHHHHHHhCCCCcEEEEcCCCCCCH--------------------------------
Confidence 4566777653236777766544 33344444 788999999954221
Q ss_pred hHHHHHHHHHHHHcCCCEEEEehHHHHHHH
Q 014368 110 DSIELRLAKLCLERNIPYLGICRGSQVLNV 139 (426)
Q Consensus 110 d~~e~~lir~ale~~iPILGIClG~QlLav 139 (426)
.+++.|.+.++|||-+=...--.+.
T Consensus 89 -----~i~~~A~~~~ipvl~t~~~T~~~~~ 113 (139)
T 2ioj_A 89 -----LVLTKAEERGVPVILTGHDTLTAVS 113 (139)
T ss_dssp -----HHHHHHHHHTCCEEECSSCHHHHHH
T ss_pred -----HHHHHHHHCCCeEEEECCCHHHHHH
Confidence 2456666789999988766554444
No 107
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=66.08 E-value=19 Score=32.79 Aligned_cols=61 Identities=8% Similarity=0.078 Sum_probs=40.2
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhh---hhhc--CCCCEEEECCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHML---LDSF--EPIHGVLLCEG 72 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l---~~~l--e~~DGVILsGG 72 (426)
..+|||+... ..+.|..-+-...-+.+.+.|..+++.....+.+.. .+.+ ..+||||+.+.
T Consensus 7 s~~Igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 72 (276)
T 3jy6_A 7 SKLIAVIVAN--IDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSF 72 (276)
T ss_dssp CCEEEEEESC--TTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESS
T ss_pred CcEEEEEeCC--CCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 3578888644 234555555666677888899999988766554321 1111 47999999876
No 108
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=65.80 E-value=30 Score=32.66 Aligned_cols=60 Identities=15% Similarity=-0.069 Sum_probs=38.3
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhh-----cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDS-----FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~-----le~~DGVILsGG 72 (426)
..||++... ..+.|..-+-...-+.+.+.|..+++.....+.+...+. -..+||||+.+.
T Consensus 63 ~~Igvi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 127 (339)
T 3h5o_A 63 RTVLVLIPS--LANTVFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGL 127 (339)
T ss_dssp CEEEEEESC--STTCTTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CEEEEEeCC--CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCC
Confidence 467777543 234455555566677888899999887765544322111 147999999875
No 109
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=64.55 E-value=19 Score=33.21 Aligned_cols=62 Identities=13% Similarity=-0.005 Sum_probs=39.5
Q ss_pred cEEEEEccCc---CCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh---hhhhc--CCCCEEEECCC
Q 014368 11 PRVLIVSRRS---VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM---LLDSF--EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~---~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~---l~~~l--e~~DGVILsGG 72 (426)
.+|||+.... ...+.|..-+-...-+.+.+.|..+++.....+.+. +.+.+ ..+||||+.+.
T Consensus 8 ~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 77 (295)
T 3hcw_A 8 YKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYS 77 (295)
T ss_dssp CEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCC
T ss_pred cEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCc
Confidence 5788886431 234556565666677788889999887765443221 22222 47999999865
No 110
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=64.02 E-value=24 Score=33.22 Aligned_cols=62 Identities=3% Similarity=-0.093 Sum_probs=40.8
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhh---hh--cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLL---DS--FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~---~~--le~~DGVILsGG 72 (426)
.+||++.......+.|+..+-...-+.+.+.|..+++.....+.+... +. -..+||||+.+.
T Consensus 62 ~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 62 QTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp SEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 568887654334456666666667778889999998887654443211 11 137999999875
No 111
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=63.99 E-value=8.1 Score=33.86 Aligned_cols=69 Identities=16% Similarity=0.084 Sum_probs=37.2
Q ss_pred CCCcEEEEEccCc-CCcccccccchhHHHHHHHHC-----CCEEEEEcCC-CChhhh----hhhc--CCCCEEEECCCCC
Q 014368 8 VILPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVGY-----GAVPAIVPRV-SGVHML----LDSF--EPIHGVLLCEGED 74 (426)
Q Consensus 8 ~~~P~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~-----Ga~~vivp~~-~~~~~l----~~~l--e~~DGVILsGG~d 74 (426)
.-+|+|+|++-.+ ...+...+.-+....+.+.+. |+.++..... .+.+.+ .+.+ +.+|-||.+||.+
T Consensus 3 ~~~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g 82 (167)
T 1uuy_A 3 GPEYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTG 82 (167)
T ss_dssp CCSEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CCCcEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 3468999998543 222222222122233456666 8877633222 233333 3333 3689999999975
Q ss_pred CC
Q 014368 75 ID 76 (426)
Q Consensus 75 id 76 (426)
+.
T Consensus 83 ~g 84 (167)
T 1uuy_A 83 FT 84 (167)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 112
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=63.76 E-value=24 Score=32.02 Aligned_cols=61 Identities=10% Similarity=-0.015 Sum_probs=38.3
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-e~~DGVILsGG 72 (426)
+++|||+... ..+.|+..+-...-+.+...|..+++.....+.+. +.... ..+||||+.+.
T Consensus 1 ~~~Igvi~~~--~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (271)
T 2dri_A 1 KDTIALVVST--LNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 66 (271)
T ss_dssp CCEEEEEESC--SSSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCS
T ss_pred CcEEEEEecC--CCCHHHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3578887643 23556556666667778889998887764444321 22222 36999999754
No 113
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=63.69 E-value=32 Score=31.14 Aligned_cols=62 Identities=3% Similarity=-0.046 Sum_probs=37.2
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-e~~DGVILsGG 72 (426)
.+||++...+...+.|...+-....+.+.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 20 ~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 86 (296)
T 3brq_A 20 QTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 86 (296)
T ss_dssp CEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred ceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 5788886432123445555555666778889999888765444321 11111 47999999865
No 114
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=63.37 E-value=20 Score=32.85 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=40.4
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhh---hhc--CCCCEEEECCCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLL---DSF--EPIHGVLLCEGE 73 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~---~~l--e~~DGVILsGG~ 73 (426)
.+|||+... ..+.|...+-...-+.+.+.|..++++....+.+... +.+ ..+||||+.+..
T Consensus 9 ~~Igvv~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (291)
T 3egc_A 9 NVVGLIVSD--IENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSE 74 (291)
T ss_dssp CEEEEEESC--TTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred cEEEEEECC--CcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 578887643 2345555556666778889999999887655543211 111 479999998763
No 115
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=61.67 E-value=27 Score=32.73 Aligned_cols=59 Identities=10% Similarity=0.061 Sum_probs=36.0
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHC-CCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY-GAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~-Ga~~vivp~~~~~~~----l~~~l-e~~DGVILsGG 72 (426)
.+|||+... .+.|...+-....+.+.+. |..+++.....+.+. +.... ..+||||+.+.
T Consensus 7 ~~Igvi~~~---~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 71 (325)
T 2x7x_A 7 FRIGVAQCS---DDSWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISAN 71 (325)
T ss_dssp CEEEEEESC---CSHHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEecC---CCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 578887643 4445444445555667777 888887765444321 11111 47999999865
No 116
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=61.67 E-value=27 Score=32.29 Aligned_cols=60 Identities=12% Similarity=-0.076 Sum_probs=39.0
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh---hhhhc--CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM---LLDSF--EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~---l~~~l--e~~DGVILsGG 72 (426)
.+|||+... ..+.|..-+-...-+.+.+.|..+++.....+.+. +.+.+ ..+||||+.+.
T Consensus 16 ~~Igvi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 80 (303)
T 3kke_A 16 GTIGLIVPD--VNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRR 80 (303)
T ss_dssp -CEEEEESC--TTSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCC
T ss_pred CEEEEEeCC--CcChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecC
Confidence 467877643 23455555666677788899999988876554332 11211 47999999876
No 117
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=61.09 E-value=34 Score=31.36 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=38.1
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhh-cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDS-FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~-le~~DGVILsGG 72 (426)
.+|||+... ..+.|...+-...-+.+.+.|..+++.....+.+. +... -..+||||+.+.
T Consensus 17 ~~Igvi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 81 (289)
T 2fep_A 17 TTVGVIIPD--ISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGG 81 (289)
T ss_dssp CEEEEEESC--TTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CeEEEEeCC--CCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 578887643 23455555556667778889999888765444322 1111 147999999875
No 118
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=60.60 E-value=30 Score=31.57 Aligned_cols=62 Identities=8% Similarity=-0.152 Sum_probs=37.7
Q ss_pred cEEEEEccC-c-CCcccccccchhHHHHHHHHCCCEEEEEcCCCChh----hhhhhc-CCCCEEEECCC
Q 014368 11 PRVLIVSRR-S-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVH----MLLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~-~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~----~l~~~l-e~~DGVILsGG 72 (426)
.+||++... . -..+.|..-+-...-+.+.+.|..+++.....+.+ .+.... ..+||||+.+.
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSC
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeec
Confidence 468887643 1 01455655566666778888999888765433321 122211 47999999875
No 119
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=60.20 E-value=40 Score=30.81 Aligned_cols=60 Identities=3% Similarity=-0.103 Sum_probs=37.9
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh------hhhhc--CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM------LLDSF--EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~------l~~~l--e~~DGVILsGG 72 (426)
.+||++... ..+.|...+-...-+.+.+.|..+++.....+.+. +.+.+ ..+||||+.+.
T Consensus 9 ~~Ig~i~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 76 (290)
T 2rgy_A 9 GIIGLFVPT--FFGSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISH 76 (290)
T ss_dssp CEEEEECSC--SCSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CeEEEEeCC--CCCchHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecC
Confidence 478888643 23455555556666778889999887765433221 22211 47999999875
No 120
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=59.27 E-value=44 Score=30.40 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=36.9
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-e~~DGVILsGG 72 (426)
.+|||+... ..+.|...+-...-+.+.+.|..+++.....+.+. +...+ ..+||||+.+.
T Consensus 2 ~~Igvi~~~--~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 2 KTIGLVIST--LNNPFFVTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPV 66 (283)
T ss_dssp CEEEEEESC--SSSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEecC--CCCHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 367777543 23455555556666778888999887765444322 11111 46999999754
No 121
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=58.62 E-value=25 Score=32.26 Aligned_cols=60 Identities=3% Similarity=-0.022 Sum_probs=36.7
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEE-cCCCChhhhhhhc-----CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIV-PRVSGVHMLLDSF-----EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~viv-p~~~~~~~l~~~l-----e~~DGVILsGG 72 (426)
.+|+++... ..+.|...+-...-+.+.+.|..++++ ....+.+...+.+ ..+||||+.+.
T Consensus 5 ~~I~~i~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 70 (305)
T 3g1w_A 5 ETYMMITFQ--SGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAI 70 (305)
T ss_dssp CEEEEEESS--TTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred ceEEEEEcc--CCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 456666543 234555556666677888899999884 4443433211111 36999999875
No 122
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=57.39 E-value=28 Score=33.08 Aligned_cols=60 Identities=8% Similarity=-0.123 Sum_probs=37.7
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhh-----cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDS-----FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~-----le~~DGVILsGG 72 (426)
.+||++... ..+.|..-+-...-+.+.+.|..+++.....+.+...+. -..+||||+.+.
T Consensus 71 ~~Igvi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 135 (355)
T 3e3m_A 71 GFVGLLLPS--LNNLHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYD 135 (355)
T ss_dssp CEEEEEESC--SBCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred CEEEEEeCC--CCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 467777543 234454445556667788899999888765544322111 147999999865
No 123
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=56.41 E-value=23 Score=32.78 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=38.9
Q ss_pred cEEEEEccCcC---CcccccccchhHHHHHHHHCCCEEEEEcCCCChhh---hhhhc--CCCCEEEECCC
Q 014368 11 PRVLIVSRRSV---RKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM---LLDSF--EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~---~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~---l~~~l--e~~DGVILsGG 72 (426)
.+|||+..... ..+.|...+-...-+.+.+.|..+++.....+.+. +.+.+ ..+||||+.+.
T Consensus 23 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 92 (305)
T 3huu_A 23 LTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYS 92 (305)
T ss_dssp CEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSC
T ss_pred CEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 57888865421 23455555566667778889999888765443321 11111 47999999875
No 124
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=56.38 E-value=36 Score=31.10 Aligned_cols=60 Identities=5% Similarity=-0.078 Sum_probs=36.9
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCC-EEEEEcCCCChhh----hhhh-cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA-VPAIVPRVSGVHM----LLDS-FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga-~~vivp~~~~~~~----l~~~-le~~DGVILsGG 72 (426)
.+|||+... ..+.|...+-...-+.+.+.|. .+++.....+.+. +... -..+||||+.+.
T Consensus 3 ~~Igvi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 68 (309)
T 2fvy_A 3 TRIGVTIYK--YDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV 68 (309)
T ss_dssp EEEEEEESC--TTSHHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred cEEEEEecc--CCcHHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 367887643 2345555556666777888997 7777665444321 1111 147999999865
No 125
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=55.35 E-value=46 Score=30.48 Aligned_cols=62 Identities=8% Similarity=0.025 Sum_probs=38.8
Q ss_pred cEEEEEccCc--CCcccccccchhHHHHHHHHCCCEEEEEcCCC--Chhhhhhhc--CCCCEEEECCC
Q 014368 11 PRVLIVSRRS--VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS--GVHMLLDSF--EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~--~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~--~~~~l~~~l--e~~DGVILsGG 72 (426)
.+|||+.... ...+.|..-+-...-+.+.+.|..+++..... ....+.+.+ ..+||||+.+.
T Consensus 7 ~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 74 (294)
T 3qk7_A 7 DAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHT 74 (294)
T ss_dssp CEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSC
T ss_pred ceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCC
Confidence 4688876421 22455555556666778888999998876542 112222222 37999999876
No 126
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=55.12 E-value=44 Score=30.78 Aligned_cols=60 Identities=7% Similarity=-0.065 Sum_probs=36.4
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-e~~DGVILsGG 72 (426)
.+||++.... .+.|..-+-...-+.+.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 3 ~~Ig~i~~~~--~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 67 (306)
T 2vk2_A 3 LTVGFSQVGS--ESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPV 67 (306)
T ss_dssp CEEEEEECCC--CSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred eEEEEEeCCC--CCHHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4688876542 2334444445556678888999888765444322 11111 37999999865
No 127
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=54.82 E-value=24 Score=32.39 Aligned_cols=59 Identities=5% Similarity=0.020 Sum_probs=38.3
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhh-cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDS-FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~-le~~DGVILsGG 72 (426)
.+||++... ..+.|...+-...-+.+.+.|..++++... +.+. +... -..+||||+.+.
T Consensus 3 ~~Ig~i~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~ 66 (306)
T 8abp_A 3 LKLGFLVKQ--PEEPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSLAASGAKGFVICTP 66 (306)
T ss_dssp EEEEEEESC--TTSHHHHHHHHHHHHHHHHHTEEEEEEECC-SHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred eEEEEEeCC--CCchHHHHHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 478887653 235566666667777888899888877653 4332 1111 147999999875
No 128
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=54.13 E-value=49 Score=30.10 Aligned_cols=60 Identities=15% Similarity=0.043 Sum_probs=38.2
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-e~~DGVILsGG 72 (426)
.+||++... ..+.|...+-...-+.+.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 9 ~~Igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (285)
T 3c3k_A 9 GMLLVMVSN--IANPFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDA 73 (285)
T ss_dssp CEEEEEESC--TTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCC
T ss_pred CEEEEEeCC--CCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 578888643 23455555556666778889999888765444322 11111 47999999865
No 129
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=53.93 E-value=48 Score=31.05 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=37.1
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh---hhhhc--CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM---LLDSF--EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~---l~~~l--e~~DGVILsGG 72 (426)
.+||++... ..+.|...+-...-+.+.+.|..+++.....+.+. +.+.+ ..+||||+.+.
T Consensus 64 ~~Ig~i~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 128 (332)
T 2o20_A 64 TTVGVILPT--ITSTYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGS 128 (332)
T ss_dssp CEEEEEESC--TTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred CEEEEEeCC--CCCcHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 467777643 23445555555566678889999888765544321 11111 47999999875
No 130
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=53.78 E-value=58 Score=30.05 Aligned_cols=59 Identities=8% Similarity=0.084 Sum_probs=36.0
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEc-CCCChhh----hhhh-cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVP-RVSGVHM----LLDS-FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp-~~~~~~~----l~~~-le~~DGVILsGG 72 (426)
.+||++.... .+ +...+-...-+++.+.|..++++. ...+.+. +... -..+||||+.+.
T Consensus 2 ~~Ig~i~~~~--~~-~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (313)
T 2h3h_A 2 LTIGVIGKSV--HP-YWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPS 66 (313)
T ss_dssp CEEEEECSCS--SH-HHHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEeCCC--cH-HHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5788886432 23 555555666677888899888764 2333322 1111 147999999865
No 131
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=53.19 E-value=25 Score=31.81 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=38.0
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhh---hhhc--CCCCEEEECC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHML---LDSF--EPIHGVLLCE 71 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l---~~~l--e~~DGVILsG 71 (426)
.+|||+... ..+.|..-+-...-+.+.+.|..+++.....+.+.. .+.+ ..+||||+.+
T Consensus 9 ~~Ig~i~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 9 KLIGLLLPD--MSNPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp -CEEEEESC--TTSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG
T ss_pred CEEEEEECC--CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 467777643 234555555666677888999999888765554321 1111 4799999987
No 132
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=52.65 E-value=25 Score=33.00 Aligned_cols=61 Identities=5% Similarity=-0.088 Sum_probs=38.2
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CC--CCEEEECCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EP--IHGVLLCEG 72 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-e~--~DGVILsGG 72 (426)
..+|||+... ..+.|...+-...-+.+.+.|..+++.....+.+. +...+ .. +||||+.+.
T Consensus 5 s~~Igvi~~~--~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~ 72 (332)
T 2rjo_A 5 QTTLACSFRS--LTNPYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPN 72 (332)
T ss_dssp CCEEEEEESC--TTSHHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred ccEEEEEecC--CCcHHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 3578888643 23445555556666778889999888765444322 11111 36 999999865
No 133
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=52.56 E-value=29 Score=31.65 Aligned_cols=60 Identities=7% Similarity=-0.077 Sum_probs=39.0
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC--Chhhhhh----h-cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS--GVHMLLD----S-FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~--~~~~l~~----~-le~~DGVILsGG 72 (426)
.+|||+.... .+.|...+-...-+++.+.|..++++.... +.+...+ . -..+||||+.+.
T Consensus 6 ~~Igvi~~~~--~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 72 (304)
T 3o1i_D 6 EKICAIYPHL--KDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTV 72 (304)
T ss_dssp CEEEEEESCS--CSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred cEEEEEeCCC--CCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5788876532 345555566667778888999998887654 4322111 1 137999999865
No 134
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=51.98 E-value=40 Score=31.75 Aligned_cols=60 Identities=10% Similarity=-0.118 Sum_probs=38.1
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhh----hc-CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLD----SF-EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~----~l-e~~DGVILsGG 72 (426)
.+||++... ..+.|+..+-...-+.+.+.|..+++.....+.+...+ .+ ..+||||+.+.
T Consensus 69 ~~Ig~i~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~ 133 (344)
T 3kjx_A 69 NLVAVIIPS--LSNMVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGL 133 (344)
T ss_dssp SEEEEEESC--SSSSSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CEEEEEeCC--CCcHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECC
Confidence 578887643 23445555556666778888999988776555432221 11 36999999864
No 135
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=51.32 E-value=31 Score=31.02 Aligned_cols=60 Identities=10% Similarity=-0.078 Sum_probs=37.3
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhh-cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDS-FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~-le~~DGVILsGG 72 (426)
.+||++... ..+.|+..+-...-+.+.+.|..+++.....+.+. +... -..+||||+.+.
T Consensus 4 ~~Ig~i~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 68 (275)
T 3d8u_A 4 YSIALIIPS--LFEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGS 68 (275)
T ss_dssp CEEEEEESC--SSCHHHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESS
T ss_pred eEEEEEeCC--CccccHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 467887643 23445555555666778889999887765444322 1111 147999999865
No 136
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=50.52 E-value=45 Score=30.42 Aligned_cols=60 Identities=8% Similarity=0.022 Sum_probs=38.2
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-e~~DGVILsGG 72 (426)
.+||++... ..+.|...+-...-+.+.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 21 ~~Ig~i~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 85 (293)
T 2iks_A 21 RSIGLVIPD--LENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTS 85 (293)
T ss_dssp CEEEEEESC--SCSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred cEEEEEeCC--CcCcHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 578887643 23455555556666778889999888765444322 11111 47999999875
No 137
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=50.05 E-value=40 Score=32.08 Aligned_cols=62 Identities=6% Similarity=0.049 Sum_probs=39.4
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCC--hhhh-hhhcCCCCEEEECCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG--VHML-LDSFEPIHGVLLCEG 72 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~--~~~l-~~~le~~DGVILsGG 72 (426)
+.+++|+.|+.+.+++....+ ....+++...|..+.++..... ..++ .+..+.+|.||..||
T Consensus 8 m~~~~vi~Np~sG~~~~~~~~-~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GG 72 (304)
T 3s40_A 8 FEKVLLIVNPKAGQGDLHTNL-TKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGG 72 (304)
T ss_dssp CSSEEEEECTTCSSSCHHHHH-HHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEEC
T ss_pred CCEEEEEECcccCCCchHHHH-HHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEcc
Confidence 457888888876555432332 3456778888988877654332 1222 233357899999999
No 138
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=48.53 E-value=39 Score=32.09 Aligned_cols=60 Identities=8% Similarity=0.070 Sum_probs=36.5
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh---hhhhc--CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM---LLDSF--EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~---l~~~l--e~~DGVILsGG 72 (426)
.+||++... ..+.|+..+-...-+.+.+.|..+++.....+.+. +.+.+ ..+||||+.+.
T Consensus 67 ~~Igvi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 131 (348)
T 3bil_A 67 NTIGVIVPS--LINHYFAAMVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPN 131 (348)
T ss_dssp -CEEEEESC--SSSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CEEEEEeCC--CCCcHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 357777533 23445555555666778889999888765444322 11111 47999999875
No 139
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=47.95 E-value=87 Score=27.25 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=40.8
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCC------------------CChhhhhhhcCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV------------------SGVHMLLDSFEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~------------------~~~~~l~~~le~~DGVILsGG 72 (426)
++|+|+... .+++...++.|.+.|..++.+-+. .+.+.+.+.++.+|.||.+-|
T Consensus 5 ~~ilItGat--------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~ 76 (227)
T 3dhn_A 5 KKIVLIGAS--------GFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFN 76 (227)
T ss_dssp CEEEEETCC--------HHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEEcCC--------chHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCc
Confidence 577776544 578999999999999888876543 134456667788999999877
Q ss_pred C
Q 014368 73 E 73 (426)
Q Consensus 73 ~ 73 (426)
+
T Consensus 77 ~ 77 (227)
T 3dhn_A 77 P 77 (227)
T ss_dssp C
T ss_pred C
Confidence 5
No 140
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=47.63 E-value=13 Score=37.11 Aligned_cols=34 Identities=6% Similarity=-0.046 Sum_probs=20.9
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEE
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAI 47 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vi 47 (426)
..|||+..... ... ...-...++||.+.|..+++
T Consensus 39 k~I~iv~K~~~--~~~-~~~~~~l~~~L~~~~~~V~v 72 (365)
T 3pfn_A 39 KSVLVIKKMRD--ASL-LQPFKELCTHLMEENMIVYV 72 (365)
T ss_dssp CEEEEEECTTC--GGG-HHHHHHHHHHHHHTSCEEEE
T ss_pred CEEEEEecCCC--HHH-HHHHHHHHHHHHHCCCEEEE
Confidence 36888886532 111 22334467889999877765
No 141
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=46.47 E-value=43 Score=30.29 Aligned_cols=62 Identities=8% Similarity=0.003 Sum_probs=36.9
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCC--CChhh----hhhh-cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV--SGVHM----LLDS-FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~--~~~~~----l~~~-le~~DGVILsGG 72 (426)
.+|||+.......+.+...+-...-+.+.+.|..++++..+ .+.+. +... -..+||||+.+.
T Consensus 6 ~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 74 (289)
T 3brs_A 6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAA 74 (289)
T ss_dssp CEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCS
T ss_pred cEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 57888864322114455555555666788889988877652 33221 1111 147999999875
No 142
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=46.27 E-value=20 Score=33.83 Aligned_cols=43 Identities=16% Similarity=0.044 Sum_probs=26.9
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG 72 (426)
+|+|+.++.. +. .-+.+...+++.+.|..+. .+.+|-||.-||
T Consensus 2 ki~ii~n~~~---~~-~~~~~~l~~~l~~~g~~v~--------------~~~~D~vv~lGG 44 (272)
T 2i2c_A 2 KYMITSKGDE---KS-DLLRLNMIAGFGEYDMEYD--------------DVEPEIVISIGG 44 (272)
T ss_dssp EEEEEECCSH---HH-HHHHHHHHHHHTTSSCEEC--------------SSSCSEEEEEES
T ss_pred EEEEEECCCH---HH-HHHHHHHHHHHHHCCCEeC--------------CCCCCEEEEEcC
Confidence 5788877421 11 1223445677888887651 136899999999
No 143
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=46.12 E-value=38 Score=32.66 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=36.3
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCC--hhhhh-hh-cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG--VHMLL-DS-FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~--~~~l~-~~-le~~DGVILsGG 72 (426)
.+++|+.|+.+..++ . -...++++.+.|..+.+...... ...+. +. .+.+|.||..||
T Consensus 30 ~~~~vi~Np~sg~~~---~-~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GG 91 (332)
T 2bon_A 30 PASLLILNGKSTDNL---P-LREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGG 91 (332)
T ss_dssp CCEEEEECSSSTTCH---H-HHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEES
T ss_pred ceEEEEECCCCCCCc---h-HHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEcc
Confidence 568888888765442 1 23467788889988877654322 11211 11 236899999999
No 144
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=45.27 E-value=41 Score=30.78 Aligned_cols=59 Identities=10% Similarity=-0.035 Sum_probs=39.0
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChh---hhhhhc-CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVH---MLLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~---~l~~~l-e~~DGVILsGG 72 (426)
.+|||+. . ..+.|...+-...-+.+.+.|..+++.....+.+ .+.... ..+||||+.+.
T Consensus 13 ~~Igvi~-~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (289)
T 3k9c_A 13 RLLGVVF-E--LQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGT 75 (289)
T ss_dssp CEEEEEE-E--TTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETC
T ss_pred CEEEEEE-e--cCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECC
Confidence 5788887 2 3455666666667788889999998876544321 122222 47999999875
No 145
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=44.60 E-value=23 Score=31.82 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=40.8
Q ss_pred cEEEEEcc-CcCC--cccccccchhHHHHHHHHCCCEEEEEcCC--CChhhhhhhcCCCCEEEEC
Q 014368 11 PRVLIVSR-RSVR--KNKFVDFVGEYHLDLIVGYGAVPAIVPRV--SGVHMLLDSFEPIHGVLLC 70 (426)
Q Consensus 11 P~igI~~~-~~~~--~~~~~~~v~~~yl~~l~~~Ga~~vivp~~--~~~~~l~~~le~~DGVILs 70 (426)
-+|+|+.. +... ++.+...+.+.+++.+.+.|+.+.++... .+...+.+.+..+|+|||.
T Consensus 13 ~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~ 77 (204)
T 2amj_A 13 SNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQ 77 (204)
T ss_dssp CEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEE
T ss_pred cCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEE
Confidence 45666653 3211 44677778888899999889988877643 2455666667789999986
No 146
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=44.18 E-value=62 Score=29.49 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=36.5
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEc--CCCChhh----hhhhc-CCCCEEEECCC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVP--RVSGVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp--~~~~~~~----l~~~l-e~~DGVILsGG 72 (426)
+|||+... ..+.|+..+-...-+.+.+.|..+++.. ...+.+. +.... ..+||||+.+.
T Consensus 3 ~Igvi~~~--~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 68 (288)
T 1gud_A 3 EYAVVLKT--LSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 68 (288)
T ss_dssp EEEEEESC--SSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCS
T ss_pred EEEEEeCC--CCchHHHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 57777633 2355655566666777888998888765 3333322 22212 46999999865
No 147
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=44.10 E-value=38 Score=30.84 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=34.7
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEE-cCCCChh----hhhhh-cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIV-PRVSGVH----MLLDS-FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~viv-p~~~~~~----~l~~~-le~~DGVILsGG 72 (426)
.+||++... ..+.+...+-...-+.+.+.|..+++. ....+.+ .+... -..+||||+.+.
T Consensus 9 ~~Ig~i~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 74 (290)
T 3clk_A 9 NVIAAVVSS--VRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSI 74 (290)
T ss_dssp CEEEEECCC--CSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESC
T ss_pred CEEEEEeCC--CCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecc
Confidence 578888643 234455555566667788899988877 4322221 12221 147999999765
No 148
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=43.39 E-value=74 Score=29.57 Aligned_cols=60 Identities=10% Similarity=0.039 Sum_probs=36.8
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEE-cCCCChhh----hhhh-cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIV-PRVSGVHM----LLDS-FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~viv-p~~~~~~~----l~~~-le~~DGVILsGG 72 (426)
.+||++... ..+.+...+....-+.+.+.|..+++. +...+.+. +... -..+||||+.+.
T Consensus 4 ~~Igvi~~~--~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~ 69 (316)
T 1tjy_A 4 ERIAFIPKL--VGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAV 69 (316)
T ss_dssp CEEEEECSS--SSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CEEEEEeCC--CCChHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 578888643 234455555666667788899888775 43334321 2221 147999999764
No 149
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=42.28 E-value=1.1e+02 Score=28.03 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=15.3
Q ss_pred HHHHHHHHcCCCEEEEe
Q 014368 115 RLAKLCLERNIPYLGIC 131 (426)
Q Consensus 115 ~lir~ale~~iPILGIC 131 (426)
..+++|...++|+.|+|
T Consensus 129 ~ai~EA~~l~IPvIalv 145 (208)
T 1vi6_A 129 QAVSEATAVGIPVVALC 145 (208)
T ss_dssp HHHHHHHHTTCCEEEEE
T ss_pred hHHHHHHHhCCCEEEEe
Confidence 47888999999999999
No 150
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=41.90 E-value=1.2e+02 Score=28.07 Aligned_cols=60 Identities=3% Similarity=-0.044 Sum_probs=34.8
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEE--cCC--CChhh----hhhhc-CCCCEEEECC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIV--PRV--SGVHM----LLDSF-EPIHGVLLCE 71 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~viv--p~~--~~~~~----l~~~l-e~~DGVILsG 71 (426)
.+|||+.... ..+.|...+-...-+.+.+.|..+.++ ... .+.+. +.... ..+||||+++
T Consensus 44 ~~Igvi~~~~-~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~ 112 (342)
T 1jx6_A 44 IKISVVYPGQ-QVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTL 112 (342)
T ss_dssp EEEEEEECCC-SSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred eEEEEEecCC-cccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 5788876431 234555555566667788899877665 233 23321 11111 4799999953
No 151
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=41.46 E-value=7.2 Score=39.31 Aligned_cols=34 Identities=6% Similarity=-0.121 Sum_probs=19.8
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHC--CCEEEE
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY--GAVPAI 47 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~--Ga~~vi 47 (426)
..|+|+.++.. ... .......+++|.+. |..+++
T Consensus 42 k~V~II~n~~~--~~~-~~~~~~l~~~L~~~~~gi~V~v 77 (388)
T 3afo_A 42 QNVYITKKPWT--PST-REAMVEFITHLHESYPEVNVIV 77 (388)
T ss_dssp CEEEEEECTTC--HHH-HHHHHHHHHHHHHHCTTCEEEC
T ss_pred cEEEEEEeCCC--HHH-HHHHHHHHHHHHHhCCCeEEEE
Confidence 46888887642 211 22334456778777 766654
No 152
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=41.29 E-value=32 Score=32.11 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=39.1
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC-C-----------hhhhhhhcCCCCEEEEC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-G-----------VHMLLDSFEPIHGVLLC 70 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~-----------~~~l~~~le~~DGVILs 70 (426)
+++|+|+... .+++.....+.+.+++.+...|+.+.++.... + ...+.+.+..+|||||.
T Consensus 34 ~mkIliI~GS-~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~ 105 (247)
T 2q62_A 34 RPRILILYGS-LRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWV 105 (247)
T ss_dssp CCEEEEEECC-CCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEE
T ss_pred CCeEEEEEcc-CCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEE
Confidence 3567776543 23455556677778888888899888775422 1 23445556678999985
No 153
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=41.19 E-value=1.5e+02 Score=25.66 Aligned_cols=46 Identities=11% Similarity=0.044 Sum_probs=33.5
Q ss_pred ccchhHHHHHHHHCCCEEEEEcCC-----------------CC-hhhhhhhcCCCCEEEECCCC
Q 014368 28 DFVGEYHLDLIVGYGAVPAIVPRV-----------------SG-VHMLLDSFEPIHGVLLCEGE 73 (426)
Q Consensus 28 ~~v~~~yl~~l~~~Ga~~vivp~~-----------------~~-~~~l~~~le~~DGVILsGG~ 73 (426)
.+++...++.+.+.|..++.+-+. .+ .+.+.+.++.+|.||.+.|.
T Consensus 10 G~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~ 73 (219)
T 3dqp_A 10 GRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGS 73 (219)
T ss_dssp SHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCC
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcC
Confidence 467777788888888777665442 13 55677778899999999885
No 154
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=41.07 E-value=37 Score=33.27 Aligned_cols=56 Identities=11% Similarity=-0.104 Sum_probs=33.9
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-CCCCEEEE
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-EPIHGVLL 69 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-e~~DGVIL 69 (426)
.+|||+.. ..+.|..-+-...-+.+.+.|..+++.......+.+.... ..+||||+
T Consensus 26 ~~Igvv~~---~~~~f~~~l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l~~~~vDGiIi 82 (412)
T 4fe7_A 26 HRITLLFN---ANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIA 82 (412)
T ss_dssp EEEEEECC---TTSHHHHHHHHHHHHHHHHHTCCEEEEECC-CC--------CCCSEEEE
T ss_pred ceEEEEeC---CcchhhHHHHHHHHHHHHhcCCCeEEEecCCccchhhhHhcCCCCEEEE
Confidence 57888873 3455655566666777888898888776443322222222 36999999
No 155
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=39.86 E-value=46 Score=31.11 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=36.7
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh---hhhhc--CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM---LLDSF--EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~---l~~~l--e~~DGVILsGG 72 (426)
.+||++... ..+.|...+-...-+.+.+.|..+++.....+.+. +.+.+ ..+||||+.+.
T Consensus 61 ~~Ig~i~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 125 (332)
T 2hsg_A 61 TTVGVIIPD--ISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSG 125 (332)
T ss_dssp CEEEEEEC----CCSHHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCS
T ss_pred CEEEEEeCC--CCCcHHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecC
Confidence 578887643 23445555555666778889999888765433221 12222 46999999875
No 156
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=39.61 E-value=36 Score=32.30 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=36.3
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC--------------------------ChhhhhhhcC-
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS--------------------------GVHMLLDSFE- 62 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~--------------------------~~~~l~~~le- 62 (426)
+.+|+|+... .++|...++.+.+.|..++++-+.. +.+.+.+.++
T Consensus 10 ~~~IlVtGat--------G~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~ 81 (346)
T 3i6i_A 10 KGRVLIAGAT--------GFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKE 81 (346)
T ss_dssp -CCEEEECTT--------SHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHH
T ss_pred CCeEEEECCC--------cHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhh
Confidence 3577777654 4577777777777777666554422 3345556666
Q ss_pred -CCCEEEECCCC
Q 014368 63 -PIHGVLLCEGE 73 (426)
Q Consensus 63 -~~DGVILsGG~ 73 (426)
.+|.||.+.|.
T Consensus 82 ~~~d~Vi~~a~~ 93 (346)
T 3i6i_A 82 HEIDIVVSTVGG 93 (346)
T ss_dssp TTCCEEEECCCG
T ss_pred CCCCEEEECCch
Confidence 78888888774
No 157
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=39.24 E-value=33 Score=31.11 Aligned_cols=61 Identities=5% Similarity=-0.067 Sum_probs=37.1
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh---hhhhhhc--CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV---HMLLDSF--EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~---~~l~~~l--e~~DGVILsGG 72 (426)
.+|||+...+ ..+.+..-+-...-+.+.+.|..++++....+. ..+.+.+ ..+||||+.+.
T Consensus 12 ~~Igvi~~~~-~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 77 (289)
T 3g85_A 12 PTIALYWSSD-ISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANI 77 (289)
T ss_dssp CEEEEEEETT-SCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSC
T ss_pred ceEEEEeccc-cchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecC
Confidence 5788886522 234555555666677888899888766432221 1222222 36999999875
No 158
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=38.74 E-value=1.1e+02 Score=27.80 Aligned_cols=60 Identities=10% Similarity=0.100 Sum_probs=35.8
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEc-CCCChhh----hhhh-cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVP-RVSGVHM----LLDS-FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp-~~~~~~~----l~~~-le~~DGVILsGG 72 (426)
.+||++.... .+.|...+-...-+++.+.|..++++. ...+.+. +... -..+||||+.+.
T Consensus 5 ~~Ig~i~~~~--~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 70 (303)
T 3d02_A 5 KTVVNISKVD--GMPWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPN 70 (303)
T ss_dssp EEEEEECSCS--SCHHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEeccC--CChHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 4688886432 244555555666677888998877543 3333322 1111 147999999865
No 159
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=37.02 E-value=84 Score=28.25 Aligned_cols=60 Identities=10% Similarity=0.023 Sum_probs=37.2
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhh-cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDS-FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~-le~~DGVILsGG 72 (426)
.+||++.... .+.+..-+-...-+.+.+.|..+++.....+.+. +... -..+||||+.+.
T Consensus 8 ~~Ig~i~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 72 (289)
T 1dbq_A 8 KSIGLLATSS--EAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCS 72 (289)
T ss_dssp CEEEEEESCT--TSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CEEEEEeCCC--CChHHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEec
Confidence 4788886432 3445444555566677888998888765544332 1111 147999999765
No 160
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=36.58 E-value=30 Score=31.17 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=32.7
Q ss_pred EEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChh----hhhhhc-CCCCEEEECCC
Q 014368 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVH----MLLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~----~l~~~l-e~~DGVILsGG 72 (426)
|||+... ..+.|..-+-....+.+.+.|..+++.....+.+ .+.... ..+||||+.+.
T Consensus 2 Igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 64 (276)
T 2h0a_A 2 VSVLLPF--VATEFYRRLVEGIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASY 64 (276)
T ss_dssp EEEEECC--SCCHHHHHHHHHHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESC
T ss_pred EEEEECC--CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecC
Confidence 5666532 2344545455556677888899888765433221 111111 36999999875
No 161
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=35.41 E-value=88 Score=25.86 Aligned_cols=91 Identities=14% Similarity=0.015 Sum_probs=50.5
Q ss_pred hhHHHHHHHHCCCEEEEEcCCCC-------hhhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhhcCCCc
Q 014368 31 GEYHLDLIVGYGAVPAIVPRVSG-------VHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDT 103 (426)
Q Consensus 31 ~~~yl~~l~~~Ga~~vivp~~~~-------~~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~h~~~~ 103 (426)
+...++.|.+.|..+++|....+ ...+.+.-+ +|-+++.=.+..-|.. +++..++.....
T Consensus 20 g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~-vDlavi~~p~~~v~~~------------v~e~~~~g~k~v 86 (122)
T 3ff4_A 20 AYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEG-VDTVTLYINPQNQLSE------------YNYILSLKPKRV 86 (122)
T ss_dssp HHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTT-CCEEEECSCHHHHGGG------------HHHHHHHCCSEE
T ss_pred HHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCC-CCEEEEEeCHHHHHHH------------HHHHHhcCCCEE
Confidence 44557778888887666654321 112233334 7877776543211221 233333333322
Q ss_pred cccchhhHHHHHHHHHHHHcCCCEEEEehHHHH
Q 014368 104 AIDKEKDSIELRLAKLCLERNIPYLGICRGSQV 136 (426)
Q Consensus 104 ~~d~~rd~~e~~lir~ale~~iPILGIClG~Ql 136 (426)
.+.... .+.++++.|.+.++.++|=|+|.++
T Consensus 87 ~~~~G~--~~~e~~~~a~~~Girvv~nC~gv~l 117 (122)
T 3ff4_A 87 IFNPGT--ENEELEEILSENGIEPVIGCTLVML 117 (122)
T ss_dssp EECTTC--CCHHHHHHHHHTTCEEEESCHHHHH
T ss_pred EECCCC--ChHHHHHHHHHcCCeEECCcCeEEe
Confidence 222211 1246778888899999999999876
No 162
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=35.40 E-value=32 Score=31.67 Aligned_cols=60 Identities=12% Similarity=0.129 Sum_probs=39.9
Q ss_pred cEEEEEcc-CcC--CcccccccchhHHHHHHHHCCCEEEEEcCC--CChhhhhhhcCCCCEEEEC
Q 014368 11 PRVLIVSR-RSV--RKNKFVDFVGEYHLDLIVGYGAVPAIVPRV--SGVHMLLDSFEPIHGVLLC 70 (426)
Q Consensus 11 P~igI~~~-~~~--~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~--~~~~~l~~~le~~DGVILs 70 (426)
.+|+|+.. +.. ..+.+...+.+.+.+.+...|..+.++... .+.+...+.+..+|+|||.
T Consensus 26 ~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~ 90 (218)
T 3rpe_A 26 SNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQ 90 (218)
T ss_dssp CCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEE
T ss_pred cceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEEE
Confidence 45666653 322 234556667777888888899888776643 3445555667789999986
No 163
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=35.24 E-value=88 Score=27.50 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=51.5
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCC---EEEEEcCCCChh-hhhhhcCCCCEEEECCCC--CCCCCcccccC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA---VPAIVPRVSGVH-MLLDSFEPIHGVLLCEGE--DIDPSLYEAET 84 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga---~~vivp~~~~~~-~l~~~le~~DGVILsGG~--didp~~y~~~~ 84 (426)
.+|+|+..+ +....++-+.+.-++.+.++|+ .++-||-..+.- .+....+.+|+||-.|=- + .-.+|+
T Consensus 18 ~ri~IV~ar--fn~~I~~~Ll~gA~~~l~~~G~~~i~v~~VPGafEiP~aak~la~~yDavIaLG~VIrG-~T~Hfd--- 91 (160)
T 2c92_A 18 VRLAIVASS--WHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRG-QTPHFD--- 91 (160)
T ss_dssp CCEEEEEEC--SSHHHHHHHHHHHHHHHHHTTCSCCEEEEESSGGGHHHHHHHHHTSCSEEEEEEEEECC-SSTHHH---
T ss_pred CEEEEEEEe--CcHHHHHHHHHHHHHHHHHcCCCceEEEECCcHHHHHHHHHHHHhcCCEEEEEeeeecC-CchHHH---
Confidence 578888643 1122345556667889999997 444566322211 112334579998877621 0 111221
Q ss_pred CCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEE-EE
Q 014368 85 SNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYL-GI 130 (426)
Q Consensus 85 ~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPIL-GI 130 (426)
.--+..-..+++-.++.++||. ||
T Consensus 92 ----------------------~Va~~vs~Gl~~v~L~~~vPV~~GV 116 (160)
T 2c92_A 92 ----------------------YVCDAVTQGLTRVSLDSSTPIANGV 116 (160)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ----------------------HHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 1122334567788888999976 73
No 164
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=35.21 E-value=5.7 Score=27.12 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=12.6
Q ss_pred EEEEehHHHHHHHHhC
Q 014368 127 YLGICRGSQVLNVACG 142 (426)
Q Consensus 127 ILGIClG~QlLava~G 142 (426)
.-|.|+|.|+|..+-|
T Consensus 32 tagacfgaqimvaakg 47 (48)
T 1ehs_A 32 TAGACFGAQIMVAAKG 47 (48)
T ss_dssp SCCTTTTTHHHHTTTT
T ss_pred ccccccchhHhhhccc
Confidence 4578999999976655
No 165
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=34.87 E-value=81 Score=29.84 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=15.4
Q ss_pred HHHHHHHHcCCCEEEEe
Q 014368 115 RLAKLCLERNIPYLGIC 131 (426)
Q Consensus 115 ~lir~ale~~iPILGIC 131 (426)
..+++|...+||+.|||
T Consensus 165 ~AI~EA~~lgIPvIalv 181 (253)
T 3bch_A 165 QPLTEASYVNLPTIALC 181 (253)
T ss_dssp HHHHHHHHTTCCEEEEE
T ss_pred hHHHHHHHhCCCEEEEE
Confidence 47889999999999999
No 166
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=34.85 E-value=45 Score=31.89 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=39.7
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC-C------------hhhhhhhcCCCCEEEEC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-G------------VHMLLDSFEPIHGVLLC 70 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~------------~~~l~~~le~~DGVILs 70 (426)
+++|+|+... .+++.....+.+.+++.+...|+.+.++.... + ...+.+.+..+|||||.
T Consensus 58 ~mKILiI~GS-~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~a 130 (279)
T 2fzv_A 58 PVRILLLYGS-LRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWC 130 (279)
T ss_dssp CCEEEEEESC-CSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEE
T ss_pred CCEEEEEEeC-CCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEE
Confidence 4667777643 34456666777888888888999988775421 1 22344555678999985
No 167
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=34.67 E-value=45 Score=29.73 Aligned_cols=57 Identities=11% Similarity=0.031 Sum_probs=37.4
Q ss_pred CCCcEEEEEccCcCCcccccccchhHHHHHHHHCC-CEEEEEcCC-------------------CChhhhhhhcCCCCEE
Q 014368 8 VILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYG-AVPAIVPRV-------------------SGVHMLLDSFEPIHGV 67 (426)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~G-a~~vivp~~-------------------~~~~~l~~~le~~DGV 67 (426)
.++++|+|+-.. .+++...++.|.+.| +.++++-+. .+.+.+.+.++.+|.|
T Consensus 21 ~~mk~vlVtGat--------G~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~v 92 (236)
T 3qvo_A 21 GHMKNVLILGAG--------GQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIV 92 (236)
T ss_dssp -CCEEEEEETTT--------SHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred CcccEEEEEeCC--------cHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEE
Confidence 345677776543 468888888888888 676655432 2344556667788888
Q ss_pred EECCC
Q 014368 68 LLCEG 72 (426)
Q Consensus 68 ILsGG 72 (426)
|.+.|
T Consensus 93 v~~a~ 97 (236)
T 3qvo_A 93 YANLT 97 (236)
T ss_dssp EEECC
T ss_pred EEcCC
Confidence 86655
No 168
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=33.56 E-value=52 Score=30.10 Aligned_cols=60 Identities=13% Similarity=-0.017 Sum_probs=38.9
Q ss_pred cEEEEEccCcCCcccccc-cchhHHHHHHHHCCCEEEEEcCCCChhhhhhh-----cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVD-FVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDS-----FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~-~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~-----le~~DGVILsGG 72 (426)
.+|||+.... .+.++. .+-...-+.+.+.|..+++.....+.+...+. -..+||||+.+.
T Consensus 14 ~~Igvi~~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 14 NTFGIITDYV--STTPYSVDIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp CEEEEEESST--TTCCSCHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CEEEEEeCCC--cCcccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 5788886442 244444 55566777888999999988765544321111 137999999864
No 169
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=33.12 E-value=91 Score=29.28 Aligned_cols=60 Identities=12% Similarity=0.031 Sum_probs=37.5
Q ss_pred CCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCC-hhhhhhhcCCCCEEEEC
Q 014368 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG-VHMLLDSFEPIHGVLLC 70 (426)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~-~~~l~~~le~~DGVILs 70 (426)
++.+|+|+....+......-.-+...++++.+.|..++.+..... ...+.. ..+|.++..
T Consensus 12 ~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~--~~~D~v~~~ 72 (317)
T 4eg0_A 12 RFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKD--EGFVRAFNA 72 (317)
T ss_dssp GGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHH--TTCCEEEEC
T ss_pred hcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhh--cCCCEEEEc
Confidence 567899998654433322122356678999999999998874322 222222 468988764
No 170
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=32.50 E-value=47 Score=29.25 Aligned_cols=57 Identities=12% Similarity=0.002 Sum_probs=35.5
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC---------------------Ch-hhhhhhcCCCCEEE
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS---------------------GV-HMLLDSFEPIHGVL 68 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~---------------------~~-~~l~~~le~~DGVI 68 (426)
..|+|+.... +.....+.+.+++.+.+.|+.+.++.... +. ..+.+.+..+|+||
T Consensus 7 mkilii~~S~---~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii 83 (211)
T 1ydg_A 7 VKLAIVFYSS---TGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIV 83 (211)
T ss_dssp CEEEEEECCS---SSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEE
T ss_pred CeEEEEEECC---CChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEE
Confidence 3566664322 22345677778888888999888776433 11 23344456799999
Q ss_pred EC
Q 014368 69 LC 70 (426)
Q Consensus 69 Ls 70 (426)
|.
T Consensus 84 ~g 85 (211)
T 1ydg_A 84 FS 85 (211)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 171
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=32.14 E-value=61 Score=23.35 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=26.3
Q ss_pred HHHhhhhHHHHHHHHHHHhhcCHHHHHhHHHHHHHHHHHh
Q 014368 370 LERLKLNEERERLARNVIGKMSVEQLSDLMSFYFTMGQIC 409 (426)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (426)
+..-++++++.+---.++.+..-+ .||.+||+|+..|.
T Consensus 11 ikSS~l~~~hK~~ml~LL~dikg~--~dL~eF~qMl~~I~ 48 (56)
T 1oks_A 11 IKSSRLEEDRKRYLMTLLDDIKGA--NDLAKFHQMLVKII 48 (56)
T ss_dssp HHHSCSCHHHHHHHHHHHHHCCSH--HHHHHHHHHHHHHH
T ss_pred HHhcccchHHHHHHHHHHHHcccc--chHHHHHHHHHHHH
Confidence 444567777776655666554333 58999999998885
No 172
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=32.10 E-value=94 Score=30.06 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=15.4
Q ss_pred HHHHHHHHcCCCEEEEe
Q 014368 115 RLAKLCLERNIPYLGIC 131 (426)
Q Consensus 115 ~lir~ale~~iPILGIC 131 (426)
..+++|...+||+.|||
T Consensus 132 ~AI~EA~~lgIPvIalv 148 (295)
T 2zkq_b 132 QPLTEASYVNLPTIALC 148 (295)
T ss_dssp HHHHHHHHHTCCEEEEE
T ss_pred hHHHHHHHhCCCEEEEe
Confidence 47889999999999999
No 173
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=31.25 E-value=92 Score=26.74 Aligned_cols=64 Identities=17% Similarity=0.121 Sum_probs=42.1
Q ss_pred hHHHHHHHHCCCEEEEEcCC----------CCh---hhhhhhcCCCCEEEECCCCCCCCCcccccCCCCChhHHHHHHhh
Q 014368 32 EYHLDLIVGYGAVPAIVPRV----------SGV---HMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRL 98 (426)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~----------~~~---~~l~~~le~~DGVILsGG~didp~~y~~~~~~~~~e~~~~ir~~ 98 (426)
..|.++|...|..++..|.. .|. -++.+....+|.++|.-| |-+
T Consensus 64 ~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSg---D~D-------------------- 120 (165)
T 2qip_A 64 RQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSG---DGD-------------------- 120 (165)
T ss_dssp HHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECC---CGG--------------------
T ss_pred HHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEEC---Chh--------------------
Confidence 45778999999998876642 110 022233467899888777 211
Q ss_pred cCCCccccchhhHHHHHHHHHHHHc-CCCEEEEeh
Q 014368 99 HTSDTAIDKEKDSIELRLAKLCLER-NIPYLGICR 132 (426)
Q Consensus 99 h~~~~~~d~~rd~~e~~lir~ale~-~iPILGICl 132 (426)
-..+++.+.+. |+.|.|++.
T Consensus 121 --------------F~plv~~lr~~~G~~V~v~g~ 141 (165)
T 2qip_A 121 --------------FSLLVERIQQRYNKKVTVYGV 141 (165)
T ss_dssp --------------GHHHHHHHHHHHCCEEEEEEC
T ss_pred --------------HHHHHHHHHHHcCcEEEEEeC
Confidence 02477777886 999999984
No 174
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=31.25 E-value=61 Score=28.88 Aligned_cols=60 Identities=15% Similarity=0.052 Sum_probs=32.6
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCC------CC--------hhhhhhhcCCCCEEEECC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV------SG--------VHMLLDSFEPIHGVLLCE 71 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~------~~--------~~~l~~~le~~DGVILsG 71 (426)
+++|+|+... .|++++...+..+.. .+...|+.+.++... .+ ...+.+.+...|||||.-
T Consensus 2 ~k~I~vi~GS-~R~~S~~~~la~~~~-~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~t 75 (190)
T 3u7r_A 2 VKTVAVMVGS-LRKDSLNHKLMKVLQ-KLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAIT 75 (190)
T ss_dssp CEEEEEEESC-CSTTCHHHHHHHHHH-HHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEEC
T ss_pred CCEEEEEECC-CCCCCHHHHHHHHHH-HhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEec
Confidence 4678877542 344444444444333 344567777766421 11 122345567899999863
No 175
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=30.96 E-value=15 Score=32.52 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=16.7
Q ss_pred HHHHHHHHcCCCEEEEehHHHHHHHHhC
Q 014368 115 RLAKLCLERNIPYLGICRGSQVLNVACG 142 (426)
Q Consensus 115 ~lir~ale~~iPILGIClG~QlLava~G 142 (426)
.++...++.+..+.|||+ |-|..-.|
T Consensus 108 ~li~ki~~~~~kiiGvCF--ms~F~kag 133 (157)
T 2r47_A 108 KLVEDALEEGGELMGLCY--MDMFARAG 133 (157)
T ss_dssp HHHHHHEEEEEEEEEEEE--TTHHHHTT
T ss_pred HHHHHhhcCCCCEEEEEh--HHHHHHcC
Confidence 466666666778999994 44444333
No 176
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=30.89 E-value=1.8e+02 Score=25.43 Aligned_cols=62 Identities=19% Similarity=0.121 Sum_probs=35.4
Q ss_pred CCCCcEEEEEccCcCCcccccccchhHHHHHHHHCC-C-----EEEEEcCCCChh----hhhhhcCCCCEEEECC
Q 014368 7 SVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYG-A-----VPAIVPRVSGVH----MLLDSFEPIHGVLLCE 71 (426)
Q Consensus 7 ~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~G-a-----~~vivp~~~~~~----~l~~~le~~DGVILsG 71 (426)
...-.+|+|+..+ +....++-+-+.-++.+.++| . .++-||-..+.- .+.+. ..+||||-.|
T Consensus 9 ~~~~~ri~IV~ar--fn~~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~-~~yDavIaLG 80 (156)
T 3nq4_A 9 AAPDARVAITIAR--FNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKS-GKYDAVVALG 80 (156)
T ss_dssp CCTTCCEEEEEES--TTHHHHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHH-CSCSEEEEEE
T ss_pred CCCCCEEEEEEee--CcHHHHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhc-CCCCEEEEee
Confidence 3334578888643 112234555666788899999 4 334566433321 22222 4699988776
No 177
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=30.60 E-value=1.3e+02 Score=28.50 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=15.1
Q ss_pred HHHHHHHHcCCCEEEEe
Q 014368 115 RLAKLCLERNIPYLGIC 131 (426)
Q Consensus 115 ~lir~ale~~iPILGIC 131 (426)
..++.|...++|+.|+|
T Consensus 131 ~ai~EA~~l~IP~Ial~ 147 (252)
T 3u5c_A 131 QAIKEASYVNIPVIALT 147 (252)
T ss_dssp HHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHHcCCCEEEEE
Confidence 47788888999999999
No 178
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=29.70 E-value=1e+02 Score=28.66 Aligned_cols=62 Identities=6% Similarity=-0.023 Sum_probs=36.6
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-e~~DGVILsGG 72 (426)
..||++.......+.|.+.+-+...++....|..++++....+.+. +.... ..+||||++|.
T Consensus 6 ~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~ 72 (296)
T 2hqb_A 6 GMVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELVDGGVNLIFGHGH 72 (296)
T ss_dssp CEEEEECCCC----CCTHHHHHHHHHHHHHSCCEEEEECCCCSHHHHHHHHHHHHHTTCCEEEECST
T ss_pred cEEEEEECCCCCCCcHHHHHHHHHHHHHHHhCCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEcCH
Confidence 4678876422323356666666667788889998887754333221 22221 36999999864
No 179
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=29.33 E-value=1.3e+02 Score=27.71 Aligned_cols=56 Identities=18% Similarity=0.385 Sum_probs=41.0
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC---------------ChhhhhhhcCCCCEEEECCCC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS---------------GVHMLLDSFEPIHGVLLCEGE 73 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~---------------~~~~l~~~le~~DGVILsGG~ 73 (426)
+++|+|+... .|++...++.|.+.|..++.+-+.. ..+.+.+.++.+|.||-+.|.
T Consensus 2 ~~~vlVtGat--------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 2 SLKIAVTGGT--------GFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYTLEDLINQLNDVDAVVHLAAT 72 (311)
T ss_dssp CCEEEEETTT--------SHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCCHHHHHHHTTTCSEEEECCCC
T ss_pred CCEEEEECCC--------cHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEccccHHHHHHhhcCCCEEEEcccc
Confidence 3567776544 5789999999999998887664431 134566778899999999875
No 180
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=29.12 E-value=1.7e+02 Score=25.60 Aligned_cols=91 Identities=23% Similarity=0.268 Sum_probs=50.8
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEE--EcCCCCh----hhhhhh----cCCCCEEEECC----CCCCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAI--VPRVSGV----HMLLDS----FEPIHGVLLCE----GEDID 76 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vi--vp~~~~~----~~l~~~----le~~DGVILsG----G~did 76 (426)
.+|+|+..+ +....++-+-+.-++.+.++|..+.+ ||-..+. ..+.+. -.++||||-.| |+-
T Consensus 13 ~ri~IV~ar--fn~~I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T-- 88 (157)
T 2i0f_A 13 PHLLIVEAR--FYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGET-- 88 (157)
T ss_dssp CEEEEEEEC--SSHHHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSS--
T ss_pred cEEEEEEEe--CcHHHHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCc--
Confidence 588988644 11233455566678899999975544 4422111 111221 04699988776 321
Q ss_pred CCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEE-EEe
Q 014368 77 PSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYL-GIC 131 (426)
Q Consensus 77 p~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPIL-GIC 131 (426)
.+|+ .--+..-..+++-.++.++||. ||-
T Consensus 89 -~Hfd-------------------------~Va~~v~~gl~~vsl~~~vPV~~GVL 118 (157)
T 2i0f_A 89 -YHFD-------------------------IVSNESCRALTDLSVEESIAIGNGIL 118 (157)
T ss_dssp -STTH-------------------------HHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred -hHHH-------------------------HHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 1221 1122334567788889999975 663
No 181
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=28.48 E-value=59 Score=29.49 Aligned_cols=37 Identities=8% Similarity=-0.054 Sum_probs=23.7
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHC-CCEEEEEc
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGY-GAVPAIVP 49 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~-Ga~~vivp 49 (426)
.|+|+... .+++.....+.+.+++.+.+. |+.+.++.
T Consensus 3 kIliI~gS-~r~~s~T~~la~~i~~~l~~~~g~~v~~~d 40 (242)
T 1sqs_A 3 KIFIYAGV-RNHNSKTLEYTKRLSSIISSRNNVDISFRT 40 (242)
T ss_dssp EEEEEECC-CCTTCHHHHHHHHHHHHHHHHSCCEEEEEC
T ss_pred eEEEEECC-CCCCChHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45665432 223444566777788888877 98887764
No 182
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=27.95 E-value=53 Score=29.77 Aligned_cols=60 Identities=8% Similarity=-0.036 Sum_probs=38.4
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhh-cCCCCEEEECCCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDS-FEPIHGVLLCEGE 73 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~-le~~DGVILsGG~ 73 (426)
.+|||+... .+.|..-+-....+.+.+.|..+++.....+.+. +... -..+||||+.+..
T Consensus 9 ~~Igvi~~~---~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 9 NIIAFIVPD---QNPFFTEVLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp EEEEEEESS---CCHHHHHHHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CEEEEEECC---CCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 468887654 4555555556666778888999888765544322 1111 1479999998753
No 183
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=27.78 E-value=2.1e+02 Score=23.93 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=44.1
Q ss_pred ccccHHHHHHhhhcccccccchhhHHHhhhhHHHHHHHHHHHhhc-------CHHHHHhHHHHHHHHHHHhHHHHH
Q 014368 346 TALSLQQENRLKQMGATIRNGSSYLERLKLNEERERLARNVIGKM-------SVEQLSDLMSFYFTMGQICSEVLE 414 (426)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 414 (426)
-.||.+|+.+|...=+ .|..+-.--|.+=++|+.-|+.+ +.+.-...-.|++.||.+=.+.|.
T Consensus 19 L~Lt~~Q~~~leaie~------~fa~~r~~le~emRaan~~La~ai~~~~~~~p~V~aaid~~h~~mG~LQkeTi~ 88 (118)
T 2y39_A 19 VPLDANEREILELKED------AFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLV 88 (118)
T ss_dssp SCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999987643 34444444444445555544433 678888899999999999888854
No 184
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=27.48 E-value=38 Score=29.76 Aligned_cols=59 Identities=12% Similarity=0.178 Sum_probs=35.4
Q ss_pred cEEEEEccCcCCcccccccchhHHHHH-HHHCCCEEEEEcCCC-C-------------hhhhhhhcCCCCEEEEC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDL-IVGYGAVPAIVPRVS-G-------------VHMLLDSFEPIHGVLLC 70 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~-l~~~Ga~~vivp~~~-~-------------~~~l~~~le~~DGVILs 70 (426)
..|+|+... .+++.....+.+...+. +...|+.+.++.... + ...+.+.+..+|+|||.
T Consensus 3 mkilii~gS-~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~ 76 (197)
T 2vzf_A 3 YSIVAISGS-PSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVA 76 (197)
T ss_dssp EEEEEEECC-SSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECC-CCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEE
Confidence 456666532 22344455667777787 888898887775321 1 12223445678999985
No 185
>1gvn_A Epsilon; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: a.8.2.1 PDB: 3q8x_A*
Probab=26.80 E-value=29 Score=27.61 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=24.4
Q ss_pred HHhhcCHHHHHhHHHHHHHHHHHhHHHHH
Q 014368 386 VIGKMSVEQLSDLMSFYFTMGQICSEVLE 414 (426)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (426)
-|-+||.++|....+|+++|.+-...+++
T Consensus 57 nLF~~sl~eL~~v~~YW~~Mn~y~ksI~~ 85 (90)
T 1gvn_A 57 NLFDYSLEELQAVHEYWRSMNRYSKQVLN 85 (90)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 37899999999999999999886665543
No 186
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=26.21 E-value=1.6e+02 Score=28.17 Aligned_cols=60 Identities=10% Similarity=-0.009 Sum_probs=41.2
Q ss_pred CCCCCcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCC-------------------ChhhhhhhcCCCCE
Q 014368 6 LSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-------------------GVHMLLDSFEPIHG 66 (426)
Q Consensus 6 ~~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-------------------~~~~l~~~le~~DG 66 (426)
++..+.+|+|+... .+++...++.|.+.|..++.+-+.. +.+.+.+.++.+|.
T Consensus 25 ~~~~~~~vlVtGat--------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~ 96 (379)
T 2c5a_A 25 WPSENLKISITGAG--------GFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDH 96 (379)
T ss_dssp CTTSCCEEEEETTT--------SHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSE
T ss_pred ccccCCeEEEECCc--------cHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCE
Confidence 33334577776543 5789999999999998887664321 22345566778999
Q ss_pred EEECCCC
Q 014368 67 VLLCEGE 73 (426)
Q Consensus 67 VILsGG~ 73 (426)
||-+.|.
T Consensus 97 Vih~A~~ 103 (379)
T 2c5a_A 97 VFNLAAD 103 (379)
T ss_dssp EEECCCC
T ss_pred EEECcee
Confidence 9998774
No 187
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=25.57 E-value=72 Score=27.44 Aligned_cols=39 Identities=8% Similarity=0.058 Sum_probs=24.0
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHCC--CEEEEEcC
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYG--AVPAIVPR 50 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~G--a~~vivp~ 50 (426)
+|+|+.......+.....+.+.+++.+.+.| +.+.++..
T Consensus 3 kilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl 43 (201)
T 1t5b_A 3 KVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDL 43 (201)
T ss_dssp EEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEET
T ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 5666653322223445667777888888876 77766653
No 188
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=25.46 E-value=97 Score=26.62 Aligned_cols=57 Identities=11% Similarity=0.032 Sum_probs=34.6
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCCh----------------hhhhhhcCCCCEEEEC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV----------------HMLLDSFEPIHGVLLC 70 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~----------------~~l~~~le~~DGVILs 70 (426)
..|+|+.... +.....+.+...+.+...|+.+.++...... ....+.+..+|+|||.
T Consensus 6 ~kilii~~S~---~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~g 78 (200)
T 2a5l_A 6 PYILVLYYSR---HGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALG 78 (200)
T ss_dssp CEEEEEECCS---SSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEE
T ss_pred ceEEEEEeCC---CChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEE
Confidence 4666665331 2234567777788888889888777643210 0113345579999985
No 189
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=25.26 E-value=54 Score=31.28 Aligned_cols=38 Identities=8% Similarity=0.158 Sum_probs=28.3
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEc
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVP 49 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp 49 (426)
-+|+||.... +.+++...+.+.+++.+++.|..+.++-
T Consensus 23 MKiLII~aHP-~~~S~n~aL~~~~~~~l~~~G~eV~v~D 60 (280)
T 4gi5_A 23 MKVLLIYAHP-EPRSLNGALKNFAIRHLQQAGHEVQVSD 60 (280)
T ss_dssp CEEEEEECCS-CTTSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CeEEEEEeCC-CCccHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3677776442 3456667788889999999999988774
No 190
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=24.98 E-value=1.2e+02 Score=27.17 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=38.9
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCE-EEEEcCCCChhhhh---hhc--CCCCEEEECC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAV-PAIVPRVSGVHMLL---DSF--EPIHGVLLCE 71 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~-~vivp~~~~~~~l~---~~l--e~~DGVILsG 71 (426)
..+||++.... .+.|..-+-...-+.+.+.|.. +++.....+.+... +.+ ..+||||+.+
T Consensus 10 ~~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 10 SKMIGIIIPDL--NNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCEEEEEESCT--TSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCEEEEEeCCC--CChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 35788886442 2555555666677788899999 77776555433211 111 4799999987
No 191
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=24.81 E-value=59 Score=28.58 Aligned_cols=59 Identities=10% Similarity=0.071 Sum_probs=34.3
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCC--------------hhhhhhhcCCCCEEEEC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG--------------VHMLLDSFEPIHGVLLC 70 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~--------------~~~l~~~le~~DGVILs 70 (426)
|.+|+|+... .+++.....+.+.+++.+. .|+.+.++....- ...+.+.+..+|+|||.
T Consensus 2 M~kilii~gS-~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~ 74 (192)
T 3fvw_A 2 SKRILFIVGS-FSEGSFNRQLAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIF 74 (192)
T ss_dssp -CEEEEEESC-CSTTCHHHHHHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEE
T ss_pred CCEEEEEEcC-CCCCCHHHHHHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEE
Confidence 3566666543 2244455556666677665 6777776643210 12344556779999986
No 192
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=24.50 E-value=56 Score=26.89 Aligned_cols=15 Identities=13% Similarity=0.295 Sum_probs=12.4
Q ss_pred HHHHHHHcCCCEEEE
Q 014368 116 LAKLCLERNIPYLGI 130 (426)
Q Consensus 116 lir~ale~~iPILGI 130 (426)
-|+.|.+.++|++||
T Consensus 59 EI~~A~~~gkpIigV 73 (111)
T 1eiw_A 59 AVDLARKSSKPIITV 73 (111)
T ss_dssp HHHHHTTTTCCEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 456777899999998
No 193
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=24.46 E-value=75 Score=28.10 Aligned_cols=60 Identities=18% Similarity=0.090 Sum_probs=37.2
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-e~~DGVILsGG 72 (426)
.+|||+... ..+.|..-+-...-+.+.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 3 ~~Igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 3 KVVAIIVTR--LDSLSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp CEEEEEESC--TTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CEEEEEeCC--CCCccHHHHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 367877643 23445555555666778889999888765444322 11111 47999999875
No 194
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=23.98 E-value=1.6e+02 Score=26.45 Aligned_cols=61 Identities=8% Similarity=-0.050 Sum_probs=35.7
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHC-CCEEEEEcC---CCChhh----hhhh-cCCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY-GAVPAIVPR---VSGVHM----LLDS-FEPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~-Ga~~vivp~---~~~~~~----l~~~-le~~DGVILsGG 72 (426)
.+|||+.... ..+.|...+-...-+.+.+. |..+.+... ..+.+. +... -..+||||+.+.
T Consensus 9 ~~Igvi~~~~-~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 9 YTFACLLPKH-LEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp EEEEEEEECC-CTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred ceEEEEecCC-CCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 5677775442 14556566666667778887 777666532 123221 1111 247999999975
No 195
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=23.97 E-value=1.3e+02 Score=28.01 Aligned_cols=60 Identities=10% Similarity=0.025 Sum_probs=38.0
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-e~~DGVILsGG 72 (426)
.+||++.... .+.|...+-...-+.+.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 59 ~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 123 (340)
T 1qpz_A 59 KSIGLLATSS--EAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCS 123 (340)
T ss_dssp SEEEEEESCS--CSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CEEEEEeCCC--CChHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 4788886432 3445555556666778889999888765544332 11111 47999999865
No 196
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=23.86 E-value=2.7e+02 Score=26.21 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=21.1
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEE
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIV 48 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~viv 48 (426)
+-+|||+... .+++..|++.+...++.++-+
T Consensus 3 mirvgiIG~g--------G~i~~~h~~~l~~~~~~lvav 33 (312)
T 3o9z_A 3 MTRFALTGLA--------GYIAPRHLKAIKEVGGVLVAS 33 (312)
T ss_dssp CCEEEEECTT--------SSSHHHHHHHHHHTTCEEEEE
T ss_pred ceEEEEECCC--------hHHHHHHHHHHHhCCCEEEEE
Confidence 3578887653 235677888888888776643
No 197
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=23.82 E-value=1e+02 Score=28.71 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=28.6
Q ss_pred hHHHHHHHHCCCEEEEEcCCC----Chhhhhh---hcCCCCEEEECCCC
Q 014368 32 EYHLDLIVGYGAVPAIVPRVS----GVHMLLD---SFEPIHGVLLCEGE 73 (426)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~----~~~~l~~---~le~~DGVILsGG~ 73 (426)
+.+.+.|++.|+.++.+|... +.+.+.+ .+..+|.|||+-..
T Consensus 38 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~n 86 (286)
T 1jr2_A 38 DPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPR 86 (286)
T ss_dssp CHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHH
T ss_pred cHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCHH
Confidence 556788999999999888531 2222222 23678999999763
No 198
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=23.68 E-value=70 Score=30.16 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=33.8
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECC
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCE 71 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsG 71 (426)
+++||||..... ..-...+.+++...|..+.+++...-... .+.|+.+|.||++.
T Consensus 4 m~~vLiV~g~~~------~~~a~~l~~aL~~~g~~V~~i~~~~~~~~-~~~L~~yDvIIl~d 58 (259)
T 3rht_A 4 MTRVLYCGDTSL------ETAAGYLAGLMTSWQWEFDYIPSHVGLDV-GELLAKQDLVILSD 58 (259)
T ss_dssp --CEEEEESSCT------TTTHHHHHHHHHHTTCCCEEECTTSCBCS-SHHHHTCSEEEEES
T ss_pred CceEEEECCCCc------hhHHHHHHHHHHhCCceEEEecccccccC-hhHHhcCCEEEEcC
Confidence 578899853321 12234466789999999988875432222 12356899999974
No 199
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Probab=23.40 E-value=3.1e+02 Score=25.81 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=28.5
Q ss_pred HHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 014368 35 LDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (426)
Q Consensus 35 l~~l~~~Ga~~vivp~~~~~~~l~~~le~~DGVILsGG 72 (426)
...+...||.|++.. .++++.+.++.+|+|+|--|
T Consensus 33 AN~~La~GasP~M~~---~~~e~~e~~~~a~alvIn~G 67 (273)
T 3dzv_A 33 ANALLYIDAKPIMAD---DPREFPQMFQQTSALVLNLG 67 (273)
T ss_dssp HHHHHHTTCEEECCC---CGGGHHHHHTTCSEEEEECC
T ss_pred HHHHHHcCCchhhcC---CHHHHHHHHHHCCeEEEecC
Confidence 456888999999975 46777888888999999766
No 200
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=23.30 E-value=2e+02 Score=27.26 Aligned_cols=31 Identities=10% Similarity=0.251 Sum_probs=20.8
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEE
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIV 48 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~viv 48 (426)
+-+|||+... .+++..|++.+...|+.++-+
T Consensus 3 mirvgiIG~g--------G~i~~~h~~~l~~~~~~lvav 33 (318)
T 3oa2_A 3 MKNFALIGAA--------GYIAPRHMRAIKDTGNCLVSA 33 (318)
T ss_dssp CCEEEEETTT--------SSSHHHHHHHHHHTTCEEEEE
T ss_pred ceEEEEECCC--------cHHHHHHHHHHHhCCCEEEEE
Confidence 3578887652 135677888888888766633
No 201
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=23.05 E-value=2e+02 Score=24.92 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=38.8
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHC--CCEEEEEcCC------------------CChhhhhhhcCCCCEEEE
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY--GAVPAIVPRV------------------SGVHMLLDSFEPIHGVLL 69 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~--Ga~~vivp~~------------------~~~~~l~~~le~~DGVIL 69 (426)
+.+|+|+... .+++...++.+.+. |..++.+-+. .+.+.+.+.++.+|.||.
T Consensus 4 ~~~ilVtGas--------G~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~ 75 (253)
T 1xq6_A 4 LPTVLVTGAS--------GRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVI 75 (253)
T ss_dssp CCEEEEESTT--------SHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred CCEEEEEcCC--------cHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEE
Confidence 4567776543 46888888888888 7777765432 234556667788999999
Q ss_pred CCCC
Q 014368 70 CEGE 73 (426)
Q Consensus 70 sGG~ 73 (426)
+.|.
T Consensus 76 ~a~~ 79 (253)
T 1xq6_A 76 LTSA 79 (253)
T ss_dssp CCCC
T ss_pred eccc
Confidence 8774
No 202
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=22.63 E-value=1.1e+02 Score=26.76 Aligned_cols=91 Identities=11% Similarity=0.039 Sum_probs=49.8
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCE-----EEEEcCCCCh----hhhhhhcCCCCEEEECCCC--CCCCCc
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAV-----PAIVPRVSGV----HMLLDSFEPIHGVLLCEGE--DIDPSL 79 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~-----~vivp~~~~~----~~l~~~le~~DGVILsGG~--didp~~ 79 (426)
.+|+|+..+ +....++-+-+.-++.+.++|+. ++-||-..+. ..+.+ -.++||||-.|=- + .-.+
T Consensus 11 ~ri~IV~ar--fn~~I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~-~~~yDavIaLG~VIrG-~T~H 86 (158)
T 1di0_A 11 FKIAFIQAR--WHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLAR-TGRYAAIVGAAFVIDG-GIYD 86 (158)
T ss_dssp EEEEEEEEC--TTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHH-TSCCSEEEEEEECCCC-SSBC
T ss_pred CEEEEEEEe--CcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHh-cCCCCEEEEeeccccC-CCcH
Confidence 578888644 11223445566678889988852 3345532221 11111 2469999987731 0 1111
Q ss_pred ccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEE-EE
Q 014368 80 YEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYL-GI 130 (426)
Q Consensus 80 y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPIL-GI 130 (426)
|+ .--+..-..+++-.++.++||. ||
T Consensus 87 fd-------------------------~Va~~vs~Gl~~v~L~~~vPV~~GV 113 (158)
T 1di0_A 87 HD-------------------------FVATAVINGMMQVQLETEVPVLSVV 113 (158)
T ss_dssp CH-------------------------HHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HH-------------------------HHHHHHHHHHHHHHhhcCCCEEEEe
Confidence 21 1122334567788888999975 64
No 203
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=22.12 E-value=78 Score=30.13 Aligned_cols=46 Identities=15% Similarity=0.026 Sum_probs=37.8
Q ss_pred ccchhHHHHHHHHCCC-EEEEEcCCCChhhhhhhcCCCCEEEECCCC
Q 014368 28 DFVGEYHLDLIVGYGA-VPAIVPRVSGVHMLLDSFEPIHGVLLCEGE 73 (426)
Q Consensus 28 ~~v~~~yl~~l~~~Ga-~~vivp~~~~~~~l~~~le~~DGVILsGG~ 73 (426)
.+++...++.|.+.|. .++.+-...+.+.+.+.++.+|.||-+.|.
T Consensus 10 G~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~~~~~~d~Vih~a~~ 56 (369)
T 3st7_A 10 GFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLKADFIVHLAGV 56 (369)
T ss_dssp SHHHHHHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHCSEEEECCCS
T ss_pred CHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHhccCCEEEECCcC
Confidence 5789999999999998 777766545777888888889999998874
No 204
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=22.05 E-value=1e+02 Score=27.35 Aligned_cols=103 Identities=20% Similarity=0.210 Sum_probs=54.3
Q ss_pred CcEEEEEccCcCCcccccccchhHHHHHHHHCCCE-----EEEEcCCCCh----hhhhhh----cCCCCEEEECCCC--C
Q 014368 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAV-----PAIVPRVSGV----HMLLDS----FEPIHGVLLCEGE--D 74 (426)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~-----~vivp~~~~~----~~l~~~----le~~DGVILsGG~--d 74 (426)
..+|+|+..+ +....++-+-+.-++.+.++|+. ++-||-..+. ..+.+. -..+|+||-.|-- +
T Consensus 16 ~~ri~IV~ar--fn~~I~~~Ll~gA~~~L~~~Gv~~~~i~v~~VPGafEiP~aak~la~~~~~~~~~yDavIaLG~VIrG 93 (168)
T 1ejb_A 16 KIRVGIIHAR--WNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPIGVLIKG 93 (168)
T ss_dssp TCCEEEEECC--TTHHHHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGGHHHHHHHHHHHHHHTTCCCSEEEEEEEEECC
T ss_pred CCEEEEEEEe--CcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhhccccCCCcCEEEEecccccC
Confidence 3678888644 11223455566678899999963 2344532221 111110 1359998877621 0
Q ss_pred CCCCcccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEE-EEehHH---HHHHHH
Q 014368 75 IDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYL-GICRGS---QVLNVA 140 (426)
Q Consensus 75 idp~~y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPIL-GIClG~---QlLava 140 (426)
.-.+|+ ..-+..-..+++-.++.++||. ||--.+ |.+..+
T Consensus 94 -~T~Hfd-------------------------~Va~~vs~Gl~~vsL~~~vPV~~GVLT~~~~eQA~~Ra 137 (168)
T 1ejb_A 94 -STMHFE-------------------------YISDSTTHALMNLQEKVDMPVIFGLLTCMTEEQALARA 137 (168)
T ss_dssp -SSSHHH-------------------------HHHHHHHHHHHHHHHHHTSCBCCEEEEESSHHHHHHHB
T ss_pred -CchHHH-------------------------HHHHHHHHHHHHHHhhcCCCEEEEEecCCCHHHHHHhc
Confidence 111221 1122334567788888999975 854333 455443
No 205
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=21.73 E-value=2.4e+02 Score=24.49 Aligned_cols=91 Identities=14% Similarity=0.143 Sum_probs=50.1
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCE-----EEEEcCCCChh----hhhhhcCCCCEEEECCCC--CCCCCc
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAV-----PAIVPRVSGVH----MLLDSFEPIHGVLLCEGE--DIDPSL 79 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~-----~vivp~~~~~~----~l~~~le~~DGVILsGG~--didp~~ 79 (426)
.+|+|+..+ +....++-+-+.-++.+.++|+. ++-||-..+.- .+.+ -.++||||-.|-- + .-.+
T Consensus 13 ~ri~IV~ar--fn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~-~~~yDavIaLG~VIrG-~T~H 88 (154)
T 1rvv_A 13 LKIGIVVGR--FNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAE-TKKYDAIITLGTVIRG-ATTH 88 (154)
T ss_dssp CCEEEEEES--TTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHH-TSCCSEEEEEEEEECC-SSSH
T ss_pred CEEEEEEEe--CcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHh-cCCCCEEEEeeeeecC-CchH
Confidence 578888643 11223445566678899999963 44566322211 1111 1469998877621 0 1112
Q ss_pred ccccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEE-EE
Q 014368 80 YEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYL-GI 130 (426)
Q Consensus 80 y~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPIL-GI 130 (426)
|+ .--+.....+++-.++.++||. ||
T Consensus 89 fd-------------------------~V~~~vs~Gl~~v~l~~~vPV~~GV 115 (154)
T 1rvv_A 89 YD-------------------------YVCNEAAKGIAQAANTTGVPVIFGI 115 (154)
T ss_dssp HH-------------------------HHHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred HH-------------------------HHHHHHHHHHHHHHhhhCCCEEEEe
Confidence 21 1122334567788888999975 74
No 206
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=21.68 E-value=1e+02 Score=26.71 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHhhcCHHHHHhHHHHHHH
Q 014368 375 LNEERERLARNVIGKMSVEQLSDLMSFYFT 404 (426)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (426)
.++-+..+|...-...|.++|.+|++||..
T Consensus 65 ~~~l~~~~~~iY~~~fT~~El~~l~~FY~s 94 (147)
T 3oao_A 65 WDKIKPELIKLYTTNFTESELKDLNAFYQS 94 (147)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Confidence 355567888888999999999999999973
No 207
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=21.48 E-value=3e+02 Score=25.75 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=25.7
Q ss_pred CCcEEEEEccCcCCcccccccchhHHHHHHHH--CCCEEEEEcC
Q 014368 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVG--YGAVPAIVPR 50 (426)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~--~Ga~~vivp~ 50 (426)
...+|+|+... .|++...++.|.+ .|..++++-+
T Consensus 9 ~~~~vlVTGat--------G~IG~~l~~~L~~~~~g~~V~~~~r 44 (362)
T 3sxp_A 9 ENQTILITGGA--------GFVGSNLAFHFQENHPKAKVVVLDK 44 (362)
T ss_dssp TTCEEEEETTT--------SHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred CCCEEEEECCC--------CHHHHHHHHHHHhhCCCCeEEEEEC
Confidence 34577776544 5789999999998 8999887643
No 208
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=21.32 E-value=79 Score=27.94 Aligned_cols=38 Identities=18% Similarity=0.019 Sum_probs=24.4
Q ss_pred EEEEEccCcCCcccccccchhHHHHHHHHC--CCEEEEEc
Q 014368 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGY--GAVPAIVP 49 (426)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~--Ga~~vivp 49 (426)
+|+|+.......+.....+.+.+++.+.+. |+.+.++.
T Consensus 3 kiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~d 42 (212)
T 3r6w_A 3 RILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARRE 42 (212)
T ss_dssp CEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 455554332222456667788888888887 88877664
No 209
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=21.20 E-value=1.4e+02 Score=27.85 Aligned_cols=55 Identities=15% Similarity=0.054 Sum_probs=40.5
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCCEEEEEcCC-------------CChhhhhhhcCCCCEEEECCCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-------------SGVHMLLDSFEPIHGVLLCEGE 73 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-------------~~~~~l~~~le~~DGVILsGG~ 73 (426)
.+|+|+... .|++...++.|.+.|..++.+-+. .+.+.+.+.++.+|.||-+.|.
T Consensus 20 ~~vlVtGat--------G~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~ 87 (347)
T 4id9_A 20 HMILVTGSA--------GRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF 87 (347)
T ss_dssp -CEEEETTT--------SHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred CEEEEECCC--------ChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence 456665443 579999999999999988876542 2345566777899999999885
No 210
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=20.74 E-value=1.1e+02 Score=28.05 Aligned_cols=59 Identities=8% Similarity=-0.066 Sum_probs=37.1
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCC---EEEEE--cCCCChhhh----hhhc-CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA---VPAIV--PRVSGVHML----LDSF-EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga---~~viv--p~~~~~~~l----~~~l-e~~DGVILsGG 72 (426)
..|||+ . + -.|.|.+-+-...-+.+.+.|. .+.++ ....+.+.. .... ..+||||++|.
T Consensus 3 ~~Igvi-~-~-~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~ 71 (295)
T 3lft_A 3 AKIGVL-Q-F-VSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIAT 71 (295)
T ss_dssp EEEEEE-E-C-SCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESH
T ss_pred eEEEEE-E-c-cCChhHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCc
Confidence 579998 2 2 3566777777778888999998 65443 333333221 1111 36999999864
No 211
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=20.62 E-value=1.1e+02 Score=28.17 Aligned_cols=59 Identities=10% Similarity=-0.005 Sum_probs=37.0
Q ss_pred cEEEEEccCcCCcccccccchhHHHHHHHHCCC------EEEEEcCCCChhhhhh----hc-CCCCEEEECCC
Q 014368 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA------VPAIVPRVSGVHMLLD----SF-EPIHGVLLCEG 72 (426)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga------~~vivp~~~~~~~l~~----~l-e~~DGVILsGG 72 (426)
..|||+. .-.|.|..-+-...-+.+.+.|. ..++.....+.+.... .. .++||||++|.
T Consensus 9 ~~IGvi~---~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~ 78 (302)
T 2qh8_A 9 AKVAVSQ---IVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp EEEEEEE---SSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESH
T ss_pred cEEEEEE---eccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCh
Confidence 6799983 23466766677778888999998 4444443334332211 11 37999999864
No 212
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=20.54 E-value=1.3e+02 Score=27.85 Aligned_cols=61 Identities=13% Similarity=0.026 Sum_probs=32.9
Q ss_pred CcEEEEEccCc-CCccccc-----ccchhHHHHHHHHCCCEEEEEcCCCChhhh-hhhcCCCCEEEEC
Q 014368 10 LPRVLIVSRRS-VRKNKFV-----DFVGEYHLDLIVGYGAVPAIVPRVSGVHML-LDSFEPIHGVLLC 70 (426)
Q Consensus 10 ~P~igI~~~~~-~~~~~~~-----~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l-~~~le~~DGVILs 70 (426)
.++|+|.+... ...+.-+ .-+...+.+.|...|..+..+..+.....+ .+.|+.+|.||+-
T Consensus 7 ~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~ 74 (252)
T 1t0b_A 7 PIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWW 74 (252)
T ss_dssp CCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEE
T ss_pred CcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEe
Confidence 47899987321 0101111 112334567788889887775432221111 2346789999984
No 213
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=20.09 E-value=2e+02 Score=25.10 Aligned_cols=90 Identities=14% Similarity=0.031 Sum_probs=49.2
Q ss_pred CcEEEEEc-cCcCCcccccccchhHHHHHHHHCCCEEE----EEcCCCCh----hhhhhhcCCCCEEEECCCCCCCCCcc
Q 014368 10 LPRVLIVS-RRSVRKNKFVDFVGEYHLDLIVGYGAVPA----IVPRVSGV----HMLLDSFEPIHGVLLCEGEDIDPSLY 80 (426)
Q Consensus 10 ~P~igI~~-~~~~~~~~~~~~v~~~yl~~l~~~Ga~~v----ivp~~~~~----~~l~~~le~~DGVILsGG~didp~~y 80 (426)
+.+|+|+. ++.. +-+.+.-++.|.+.|+... -||-..+. ..+.+. ..+|+||-.|--
T Consensus 2 ~~ri~IV~arfn~------~~Ll~gA~~~L~~~G~~~~i~~~~VPGafEiP~aak~la~~-~~yDavIaLG~V------- 67 (156)
T 2b99_A 2 TKKVGIVDTTFAR------VDMASIAIKKLKELSPNIKIIRKTVPGIKDLPVACKKLLEE-EGCDIVMALGMP------- 67 (156)
T ss_dssp CCEEEEEEESSCS------SCCHHHHHHHHHHHCTTCEEEEEEESSGGGHHHHHHHHHHH-SCCSEEEEEECC-------
T ss_pred CcEEEEEEEecch------HHHHHHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHHHhc-CCCCEEEEeccc-------
Confidence 45788886 4433 2233666888999986332 34422221 111221 469999988742
Q ss_pred cccCCCCChhHHHHHHhhcCCCccccchhhHHHHHHHHHHHHcCCCEE-EEeh
Q 014368 81 EAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYL-GICR 132 (426)
Q Consensus 81 ~~~~~~~~~e~~~~ir~~h~~~~~~d~~rd~~e~~lir~ale~~iPIL-GICl 132 (426)
++.++ +|..-+.....+++-.++.++||. |+|-
T Consensus 68 G~T~H-------------------fd~Va~~vs~Gl~~v~L~~~vPV~~gt~~ 101 (156)
T 2b99_A 68 GKAEK-------------------DKVCAHEASLGLMLAQLMTNKHIIEVFVH 101 (156)
T ss_dssp CSSHH-------------------HHHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCcch-------------------hHHHHHHHHHHHHHHHhhhCCCEEEEeCC
Confidence 11111 011122334567777888999986 6554
Done!