Query 014369
Match_columns 426
No_of_seqs 159 out of 1182
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:27:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02746 hydroxymethylglutaryl 100.0 4.9E-76 1.1E-80 592.8 36.7 313 103-415 23-335 (347)
2 PRK05692 hydroxymethylglutaryl 100.0 8.5E-72 1.8E-76 551.5 37.3 287 123-409 1-287 (287)
3 KOG2368 Hydroxymethylglutaryl- 100.0 6.9E-69 1.5E-73 500.6 27.1 304 112-415 4-307 (316)
4 cd07938 DRE_TIM_HMGL 3-hydroxy 100.0 9.3E-68 2E-72 519.8 34.6 274 129-402 1-274 (274)
5 PRK11858 aksA trans-homoaconit 100.0 8.8E-66 1.9E-70 526.5 34.3 284 124-426 2-288 (378)
6 TIGR02660 nifV_homocitr homoci 100.0 2.4E-65 5.3E-70 521.1 34.4 282 126-426 1-285 (365)
7 PRK00915 2-isopropylmalate syn 100.0 5.2E-65 1.1E-69 538.6 34.9 287 123-426 1-299 (513)
8 TIGR02090 LEU1_arch isopropylm 100.0 1.1E-64 2.4E-69 516.0 34.0 281 127-426 1-284 (363)
9 PLN03228 methylthioalkylmalate 100.0 2.3E-64 4.9E-69 529.0 34.0 286 124-426 82-391 (503)
10 TIGR00973 leuA_bact 2-isopropy 100.0 2.7E-64 5.9E-69 530.6 34.5 284 126-426 1-296 (494)
11 PRK09389 (R)-citramalate synth 100.0 6E-64 1.3E-68 527.1 34.2 283 126-426 2-286 (488)
12 PLN02321 2-isopropylmalate syn 100.0 7.3E-64 1.6E-68 536.1 33.9 285 124-426 84-392 (632)
13 COG0119 LeuA Isopropylmalate/h 100.0 3.8E-64 8.2E-69 516.6 29.4 285 125-426 1-293 (409)
14 PRK03739 2-isopropylmalate syn 100.0 1E-62 2.3E-67 523.8 34.9 291 123-426 27-337 (552)
15 TIGR00977 LeuA_rel 2-isopropyl 100.0 1.2E-62 2.7E-67 520.6 34.2 287 126-426 1-300 (526)
16 TIGR00970 leuA_yeast 2-isoprop 100.0 1.3E-62 2.8E-67 524.2 33.8 293 123-426 23-336 (564)
17 PRK12344 putative alpha-isopro 100.0 2.6E-62 5.7E-67 518.5 35.3 285 123-426 2-303 (524)
18 cd07945 DRE_TIM_CMS Leptospira 100.0 1.9E-62 4.1E-67 483.4 30.4 274 130-415 1-280 (280)
19 PRK14847 hypothetical protein; 100.0 5.5E-61 1.2E-65 479.3 32.0 279 123-418 29-331 (333)
20 cd07939 DRE_TIM_NifV Streptomy 100.0 1.7E-57 3.6E-62 443.3 31.0 255 129-402 1-258 (259)
21 cd07940 DRE_TIM_IPMS 2-isoprop 100.0 1.1E-56 2.5E-61 439.4 30.5 255 129-402 1-268 (268)
22 cd07948 DRE_TIM_HCS Saccharomy 100.0 5E-56 1.1E-60 434.0 31.3 258 127-402 1-262 (262)
23 KOG2367 Alpha-isopropylmalate 100.0 1.4E-56 3E-61 453.2 27.9 288 122-426 53-353 (560)
24 cd07942 DRE_TIM_LeuA Mycobacte 100.0 6.5E-56 1.4E-60 437.1 29.8 263 127-402 2-284 (284)
25 cd03174 DRE_TIM_metallolyase D 100.0 8.4E-55 1.8E-59 421.6 32.9 263 130-402 1-265 (265)
26 cd07947 DRE_TIM_Re_CS Clostrid 100.0 1.5E-54 3.3E-59 426.8 29.0 256 127-402 1-279 (279)
27 cd07941 DRE_TIM_LeuA3 Desulfob 100.0 7.6E-54 1.7E-58 420.9 31.8 258 129-402 1-273 (273)
28 cd07943 DRE_TIM_HOA 4-hydroxy- 100.0 2.1E-53 4.5E-58 415.3 32.5 250 127-402 1-260 (263)
29 cd07937 DRE_TIM_PC_TC_5S Pyruv 100.0 2.1E-52 4.5E-57 411.2 28.4 249 129-404 1-269 (275)
30 PRK08195 4-hyroxy-2-oxovalerat 100.0 1.4E-50 3E-55 408.5 33.9 253 125-404 2-266 (337)
31 cd07944 DRE_TIM_HOA_like 4-hyd 100.0 8.3E-51 1.8E-55 398.1 30.1 249 129-404 1-260 (266)
32 TIGR03217 4OH_2_O_val_ald 4-hy 100.0 2.5E-50 5.5E-55 405.9 33.2 254 125-404 1-265 (333)
33 PRK12331 oxaloacetate decarbox 100.0 7.5E-50 1.6E-54 415.5 31.6 272 125-423 2-298 (448)
34 PRK12330 oxaloacetate decarbox 100.0 2E-49 4.4E-54 414.7 32.4 280 123-426 1-311 (499)
35 PRK14041 oxaloacetate decarbox 100.0 3.3E-49 7.1E-54 411.7 31.0 271 126-423 2-294 (467)
36 PF00682 HMGL-like: HMGL-like 100.0 1.4E-49 3E-54 381.2 23.2 232 135-383 1-237 (237)
37 PRK09282 pyruvate carboxylase 100.0 1.7E-47 3.7E-52 409.9 31.8 272 125-423 2-295 (592)
38 PRK14040 oxaloacetate decarbox 100.0 3.8E-47 8.3E-52 406.7 33.0 257 123-404 1-275 (593)
39 TIGR01108 oadA oxaloacetate de 100.0 4E-47 8.7E-52 406.1 30.8 249 129-404 1-269 (582)
40 PRK12581 oxaloacetate decarbox 100.0 1.3E-45 2.7E-50 383.2 31.8 276 123-423 9-307 (468)
41 PRK14042 pyruvate carboxylase 100.0 2.5E-44 5.4E-49 383.9 30.1 274 125-423 2-295 (596)
42 PRK12999 pyruvate carboxylase; 100.0 1.1E-43 2.3E-48 403.8 33.5 287 114-423 522-832 (1146)
43 TIGR02146 LysS_fung_arch homoc 100.0 1.7E-42 3.6E-47 348.5 32.0 280 129-426 1-282 (344)
44 TIGR01235 pyruv_carbox pyruvat 100.0 2E-39 4.3E-44 367.8 29.3 280 123-423 527-830 (1143)
45 COG5016 Pyruvate/oxaloacetate 100.0 4.3E-39 9.3E-44 321.8 19.9 255 124-403 3-275 (472)
46 COG1038 PycA Pyruvate carboxyl 99.9 4.8E-27 1E-31 249.5 16.6 260 123-405 532-815 (1149)
47 KOG0369 Pyruvate carboxylase [ 99.9 1.4E-23 3E-28 219.7 16.8 285 115-423 550-862 (1176)
48 TIGR02146 LysS_fung_arch homoc 98.7 5.4E-15 1.2E-19 148.9 -42.6 140 278-426 111-268 (344)
49 PRK07028 bifunctional hexulose 98.3 1.9E-05 4.1E-10 82.8 15.9 170 144-351 12-188 (430)
50 TIGR00423 radical SAM domain p 98.3 0.00024 5.2E-09 71.4 22.5 227 144-385 35-298 (309)
51 TIGR03699 mena_SCO4550 menaqui 98.3 0.00015 3.3E-09 73.5 21.3 224 144-386 71-330 (340)
52 TIGR00262 trpA tryptophan synt 98.2 0.00026 5.7E-09 69.5 20.0 175 145-350 21-224 (256)
53 TIGR03551 F420_cofH 7,8-dideme 98.1 0.00027 5.8E-09 72.1 20.4 230 143-386 68-335 (343)
54 PRK07094 biotin synthase; Prov 98.1 0.00052 1.1E-08 69.0 21.6 200 144-357 69-284 (323)
55 CHL00200 trpA tryptophan synth 98.1 0.00035 7.6E-09 68.9 19.4 176 145-350 26-228 (263)
56 TIGR03700 mena_SCO4494 putativ 98.1 0.0007 1.5E-08 69.3 21.3 229 144-385 78-340 (351)
57 PLN02591 tryptophan synthase 97.9 0.0015 3.3E-08 64.0 20.2 175 145-350 13-215 (250)
58 PRK06256 biotin synthase; Vali 97.9 0.0055 1.2E-07 62.0 24.7 219 144-386 90-324 (336)
59 PLN02389 biotin synthase 97.9 0.006 1.3E-07 63.3 25.3 219 144-387 115-355 (379)
60 PRK13125 trpA tryptophan synth 97.9 0.0024 5.3E-08 62.1 20.9 177 144-350 14-211 (244)
61 PRK08445 hypothetical protein; 97.9 0.0027 5.8E-08 65.1 22.1 223 144-385 72-334 (348)
62 PRK07360 FO synthase subunit 2 97.9 0.0017 3.6E-08 67.1 19.9 219 143-386 89-357 (371)
63 PRK15108 biotin synthase; Prov 97.8 0.013 2.9E-07 59.9 26.1 219 144-386 75-312 (345)
64 PRK09240 thiH thiamine biosynt 97.8 0.0029 6.2E-08 65.4 20.7 223 143-386 102-359 (371)
65 TIGR03128 RuMP_HxlA 3-hexulose 97.7 0.0012 2.6E-08 62.0 15.2 168 144-352 8-185 (206)
66 PRK06552 keto-hydroxyglutarate 97.7 0.0048 1E-07 59.1 19.1 151 146-350 23-180 (213)
67 PRK09196 fructose-1,6-bisphosp 97.7 0.0037 8E-08 64.0 19.0 207 135-351 14-275 (347)
68 TIGR02351 thiH thiazole biosyn 97.7 0.0047 1E-07 63.7 20.1 227 143-386 101-358 (366)
69 TIGR00433 bioB biotin syntheta 97.7 0.03 6.5E-07 55.4 24.9 217 144-383 61-295 (296)
70 PRK13111 trpA tryptophan synth 97.6 0.0048 1E-07 60.8 18.4 148 144-319 22-199 (258)
71 PRK08444 hypothetical protein; 97.6 0.0059 1.3E-07 62.8 19.7 229 143-385 78-339 (353)
72 PRK07084 fructose-bisphosphate 97.6 0.0097 2.1E-07 60.3 20.7 194 144-351 31-266 (321)
73 cd04724 Tryptophan_synthase_al 97.6 0.0039 8.5E-08 60.6 17.3 173 146-350 12-212 (242)
74 PRK09613 thiH thiamine biosynt 97.6 0.025 5.5E-07 60.3 24.1 229 143-385 113-379 (469)
75 cd04726 KGPDC_HPS 3-Keto-L-gul 97.6 0.0065 1.4E-07 56.6 17.7 165 144-350 9-183 (202)
76 PRK08185 hypothetical protein; 97.6 0.017 3.6E-07 57.8 21.3 193 136-350 10-225 (283)
77 PRK05718 keto-hydroxyglutarate 97.6 0.0046 1E-07 59.2 16.7 148 145-346 24-176 (212)
78 PRK07315 fructose-bisphosphate 97.5 0.014 3E-07 58.7 20.5 191 144-353 25-232 (293)
79 TIGR01182 eda Entner-Doudoroff 97.5 0.017 3.6E-07 55.1 19.0 152 145-350 17-173 (204)
80 cd00947 TBP_aldolase_IIB Tagat 97.5 0.02 4.3E-07 57.0 20.3 188 144-351 20-224 (276)
81 TIGR01521 FruBisAldo_II_B fruc 97.5 0.017 3.7E-07 59.2 20.1 197 144-351 23-273 (347)
82 PF00290 Trp_syntA: Tryptophan 97.5 0.0038 8.2E-08 61.6 14.9 177 144-350 20-223 (259)
83 TIGR01859 fruc_bis_ald_ fructo 97.4 0.027 5.9E-07 56.2 21.0 190 144-352 23-229 (282)
84 PRK13399 fructose-1,6-bisphosp 97.4 0.023 5E-07 58.3 20.2 206 136-351 15-275 (347)
85 PRK05835 fructose-bisphosphate 97.4 0.033 7.2E-07 56.2 20.7 189 144-350 24-252 (307)
86 COG0159 TrpA Tryptophan syntha 97.3 0.0079 1.7E-07 59.4 15.6 177 145-355 28-232 (265)
87 PRK12857 fructose-1,6-bisphosp 97.3 0.038 8.3E-07 55.2 20.7 188 144-351 25-230 (284)
88 cd00019 AP2Ec AP endonuclease 97.3 0.011 2.5E-07 57.8 16.9 206 152-384 14-250 (279)
89 PRK07709 fructose-bisphosphate 97.3 0.049 1.1E-06 54.5 21.3 188 144-350 25-230 (285)
90 TIGR00167 cbbA ketose-bisphosp 97.3 0.04 8.6E-07 55.2 20.6 188 144-350 25-233 (288)
91 PF01081 Aldolase: KDPG and KH 97.3 0.0061 1.3E-07 57.7 14.0 153 145-350 17-173 (196)
92 TIGR01858 tag_bisphos_ald clas 97.3 0.044 9.5E-07 54.8 20.6 188 144-351 23-228 (282)
93 PRK08610 fructose-bisphosphate 97.3 0.043 9.4E-07 54.9 20.6 188 144-350 25-230 (286)
94 PRK12737 gatY tagatose-bisphos 97.3 0.03 6.5E-07 56.0 19.4 197 135-351 14-230 (284)
95 PRK05927 hypothetical protein; 97.3 0.04 8.7E-07 56.6 20.6 224 143-385 74-335 (350)
96 PRK07998 gatY putative fructos 97.3 0.034 7.5E-07 55.5 19.2 188 144-351 25-227 (283)
97 PRK08508 biotin synthase; Prov 97.2 0.1 2.2E-06 51.8 22.5 216 145-386 40-274 (279)
98 PRK06015 keto-hydroxyglutarate 97.2 0.049 1.1E-06 51.8 19.2 150 145-348 13-167 (201)
99 PRK06801 hypothetical protein; 97.2 0.055 1.2E-06 54.2 20.5 186 144-352 25-232 (286)
100 PRK12738 kbaY tagatose-bisphos 97.2 0.082 1.8E-06 53.0 21.4 187 144-350 25-229 (286)
101 PF01116 F_bP_aldolase: Fructo 97.2 0.015 3.3E-07 58.2 15.8 186 144-350 24-232 (287)
102 cd00945 Aldolase_Class_I Class 97.2 0.1 2.2E-06 47.7 20.1 171 146-350 11-198 (201)
103 TIGR01163 rpe ribulose-phospha 97.2 0.13 2.8E-06 48.0 21.2 172 146-351 9-191 (210)
104 PRK09195 gatY tagatose-bisphos 97.1 0.072 1.6E-06 53.3 20.1 188 144-351 25-230 (284)
105 PRK07114 keto-hydroxyglutarate 97.1 0.026 5.6E-07 54.5 16.4 152 145-350 24-185 (222)
106 TIGR03550 F420_cofG 7,8-dideme 97.0 0.064 1.4E-06 54.3 19.1 230 142-386 32-297 (322)
107 cd00452 KDPG_aldolase KDPG and 97.0 0.098 2.1E-06 48.8 19.0 154 146-351 14-169 (190)
108 PLN02428 lipoic acid synthase 97.0 0.059 1.3E-06 55.4 18.6 142 144-297 129-282 (349)
109 PRK09856 fructoselysine 3-epim 97.0 0.037 7.9E-07 53.9 16.1 199 150-386 15-242 (275)
110 TIGR01496 DHPS dihydropteroate 97.0 0.15 3.3E-06 50.1 20.4 187 142-350 17-239 (257)
111 PRK05926 hypothetical protein; 96.9 0.16 3.4E-06 52.7 20.9 228 142-385 96-361 (370)
112 PRK09197 fructose-bisphosphate 96.9 0.18 3.8E-06 51.9 20.8 196 144-351 28-277 (350)
113 PRK06245 cofG FO synthase subu 96.9 0.17 3.7E-06 51.3 20.6 229 144-385 40-300 (336)
114 PRK06806 fructose-bisphosphate 96.8 0.35 7.6E-06 48.3 22.0 189 144-353 25-230 (281)
115 KOG3111 D-ribulose-5-phosphate 96.8 0.077 1.7E-06 50.1 16.0 181 153-381 22-215 (224)
116 PRK09140 2-dehydro-3-deoxy-6-p 96.8 0.12 2.7E-06 49.2 18.0 155 145-351 19-177 (206)
117 PTZ00413 lipoate synthase; Pro 96.8 0.083 1.8E-06 54.8 17.6 144 143-297 175-330 (398)
118 PRK15452 putative protease; Pr 96.8 0.011 2.5E-07 62.5 11.7 108 195-322 4-111 (443)
119 PRK05301 pyrroloquinoline quin 96.8 0.23 4.9E-06 51.1 21.0 138 144-297 45-189 (378)
120 PRK13361 molybdenum cofactor b 96.8 0.1 2.2E-06 52.9 18.1 138 144-294 44-187 (329)
121 PRK12928 lipoyl synthase; Prov 96.8 0.049 1.1E-06 54.6 15.3 160 144-314 86-266 (290)
122 cd00959 DeoC 2-deoxyribose-5-p 96.7 0.54 1.2E-05 44.4 21.2 178 144-352 13-202 (203)
123 cd00958 DhnA Class I fructose- 96.7 0.057 1.2E-06 51.8 14.8 188 142-352 15-213 (235)
124 PRK09234 fbiC FO synthase; Rev 96.6 0.15 3.3E-06 58.1 19.7 227 142-385 554-821 (843)
125 PRK06267 hypothetical protein; 96.6 0.32 6.9E-06 49.9 20.5 214 144-381 62-289 (350)
126 COG1060 ThiH Thiamine biosynth 96.6 0.17 3.8E-06 52.4 18.5 230 141-386 86-353 (370)
127 PLN02858 fructose-bisphosphate 96.6 0.41 8.8E-06 57.6 24.0 252 106-395 1078-1355(1378)
128 PRK09997 hydroxypyruvate isome 96.6 0.35 7.5E-06 46.9 19.7 187 151-386 18-235 (258)
129 TIGR02320 PEP_mutase phosphoen 96.6 0.2 4.3E-06 50.2 18.2 206 161-384 38-263 (285)
130 COG0191 Fba Fructose/tagatose 96.6 0.21 4.6E-06 49.8 18.1 201 135-351 14-232 (286)
131 COG0502 BioB Biotin synthase a 96.6 0.48 1E-05 48.5 21.0 224 142-388 81-321 (335)
132 TIGR02109 PQQ_syn_pqqE coenzym 96.6 0.19 4.2E-06 51.2 18.4 138 144-296 36-179 (358)
133 PRK13397 3-deoxy-7-phosphohept 96.5 0.38 8.2E-06 47.3 19.4 182 145-355 26-223 (250)
134 COG2896 MoaA Molybdenum cofact 96.5 0.4 8.8E-06 48.8 20.0 144 144-301 42-193 (322)
135 COG0826 Collagenase and relate 96.5 0.031 6.6E-07 57.5 12.2 105 202-326 14-118 (347)
136 TIGR03234 OH-pyruv-isom hydrox 96.5 0.36 7.8E-06 46.5 19.1 189 151-388 17-236 (254)
137 PLN02951 Molybderin biosynthes 96.5 0.3 6.6E-06 50.6 19.6 164 144-320 89-264 (373)
138 PRK08883 ribulose-phosphate 3- 96.5 0.24 5.1E-06 47.7 17.4 162 151-350 15-192 (220)
139 cd00946 FBP_aldolase_IIA Class 96.5 0.74 1.6E-05 47.4 21.7 196 144-351 23-273 (345)
140 TIGR00126 deoC deoxyribose-pho 96.4 0.57 1.2E-05 44.9 19.4 180 143-353 13-204 (211)
141 COG2513 PrpB PEP phosphonomuta 96.4 0.14 3.1E-06 51.0 15.3 211 153-385 30-258 (289)
142 COG1856 Uncharacterized homolo 96.3 1.1 2.4E-05 43.4 22.5 218 146-378 40-271 (275)
143 smart00518 AP2Ec AP endonuclea 96.3 0.88 1.9E-05 44.2 20.8 202 152-384 14-247 (273)
144 cd00453 FTBP_aldolase_II Fruct 96.2 0.54 1.2E-05 48.1 19.1 193 144-351 20-270 (340)
145 cd00331 IGPS Indole-3-glycerol 96.2 0.55 1.2E-05 44.5 18.4 166 145-350 28-198 (217)
146 PRK13307 bifunctional formalde 96.2 0.17 3.7E-06 52.9 15.8 166 145-350 182-355 (391)
147 PRK05481 lipoyl synthase; Prov 96.2 0.21 4.6E-06 49.9 16.1 143 144-296 79-230 (289)
148 PTZ00170 D-ribulose-5-phosphat 96.2 0.54 1.2E-05 45.4 18.3 168 148-350 19-198 (228)
149 cd04729 NanE N-acetylmannosami 96.2 0.42 9E-06 45.5 17.3 181 120-350 4-203 (219)
150 PRK01060 endonuclease IV; Prov 96.2 0.95 2.1E-05 44.2 20.2 206 150-385 14-252 (281)
151 PRK08005 epimerase; Validated 96.2 0.34 7.5E-06 46.4 16.5 162 151-350 16-188 (210)
152 TIGR00510 lipA lipoate synthas 96.1 0.14 3.1E-06 51.6 14.4 141 146-297 92-242 (302)
153 TIGR03470 HpnH hopanoid biosyn 96.1 0.46 9.9E-06 48.1 18.2 156 144-318 58-228 (318)
154 PRK13210 putative L-xylulose 5 96.1 0.49 1.1E-05 46.1 17.8 202 152-385 20-248 (284)
155 PRK09722 allulose-6-phosphate 96.1 0.16 3.4E-06 49.4 14.0 168 154-351 21-195 (229)
156 PRK11613 folP dihydropteroate 96.1 1.8 3.8E-05 43.4 22.5 165 128-316 19-205 (282)
157 PRK07226 fructose-bisphosphate 96.1 0.26 5.7E-06 48.5 15.7 176 145-350 36-228 (267)
158 TIGR01769 GGGP geranylgeranylg 96.0 0.59 1.3E-05 44.7 17.3 178 148-350 11-202 (205)
159 PRK01130 N-acetylmannosamine-6 96.0 0.87 1.9E-05 43.3 18.6 179 123-350 3-199 (221)
160 TIGR02319 CPEP_Pphonmut carbox 96.0 0.36 7.7E-06 48.6 16.5 209 154-384 29-256 (294)
161 cd00739 DHPS DHPS subgroup of 96.0 0.72 1.6E-05 45.4 18.4 187 142-350 18-241 (257)
162 PRK09989 hypothetical protein; 96.0 0.4 8.8E-06 46.5 16.6 186 151-385 18-234 (258)
163 TIGR02317 prpB methylisocitrat 96.0 0.23 5E-06 49.8 14.9 208 154-384 26-252 (285)
164 COG0036 Rpe Pentose-5-phosphat 95.9 0.61 1.3E-05 45.0 16.9 168 151-353 19-198 (220)
165 TIGR00284 dihydropteroate synt 95.9 1 2.2E-05 48.6 20.3 174 148-354 165-352 (499)
166 TIGR00735 hisF imidazoleglycer 95.9 0.97 2.1E-05 44.1 18.6 205 148-386 30-253 (254)
167 TIGR01210 conserved hypothetic 95.9 0.36 7.8E-06 48.8 15.9 126 168-299 77-210 (313)
168 PRK11320 prpB 2-methylisocitra 95.8 0.5 1.1E-05 47.5 16.3 208 154-384 30-257 (292)
169 PRK00164 moaA molybdenum cofac 95.8 0.87 1.9E-05 45.9 18.3 137 143-292 47-189 (331)
170 PF04481 DUF561: Protein of un 95.8 0.42 9E-06 46.0 14.7 180 144-350 23-211 (242)
171 PRK13398 3-deoxy-7-phosphohept 95.7 2.5 5.4E-05 42.0 21.3 180 146-354 39-234 (266)
172 PRK08745 ribulose-phosphate 3- 95.7 0.39 8.4E-06 46.4 14.7 166 151-350 19-196 (223)
173 PRK00507 deoxyribose-phosphate 95.7 2.2 4.7E-05 41.2 20.6 179 144-353 18-208 (221)
174 PF01791 DeoC: DeoC/LacD famil 95.7 0.17 3.6E-06 48.8 12.3 185 149-351 20-226 (236)
175 TIGR03586 PseI pseudaminic aci 95.7 1.1 2.3E-05 45.9 18.5 176 146-352 15-221 (327)
176 PRK08091 ribulose-phosphate 3- 95.6 0.6 1.3E-05 45.3 15.8 166 149-350 26-204 (228)
177 TIGR01949 AroFGH_arch predicte 95.6 0.54 1.2E-05 46.0 15.6 192 127-352 20-226 (258)
178 PRK07535 methyltetrahydrofolat 95.6 0.95 2.1E-05 44.7 17.3 182 146-348 23-223 (261)
179 KOG4175 Tryptophan synthase al 95.6 1.3 2.7E-05 42.4 17.0 154 145-326 29-212 (268)
180 COG1082 IolE Sugar phosphate i 95.5 0.83 1.8E-05 44.0 16.7 203 153-385 20-244 (274)
181 COG0800 Eda 2-keto-3-deoxy-6-p 95.5 0.28 6E-06 47.0 12.8 153 145-350 22-178 (211)
182 TIGR03471 HpnJ hopanoid biosyn 95.5 0.44 9.5E-06 50.6 15.8 155 145-318 227-390 (472)
183 TIGR01520 FruBisAldo_II_A fruc 95.5 3 6.5E-05 43.1 21.0 197 144-352 34-286 (357)
184 PLN02334 ribulose-phosphate 3- 95.5 1.9 4.1E-05 41.4 18.8 170 150-351 22-200 (229)
185 PRK09250 fructose-bisphosphate 95.5 0.74 1.6E-05 47.3 16.4 84 206-299 151-239 (348)
186 PRK13753 dihydropteroate synth 95.5 2.9 6.4E-05 41.8 20.3 192 134-350 15-245 (279)
187 PRK13396 3-deoxy-7-phosphohept 95.5 1.7 3.8E-05 44.8 19.2 220 146-414 113-351 (352)
188 PRK08227 autoinducer 2 aldolas 95.4 0.75 1.6E-05 45.6 15.9 124 206-352 99-225 (264)
189 PRK12595 bifunctional 3-deoxy- 95.4 2 4.3E-05 44.5 19.7 178 146-354 130-325 (360)
190 TIGR02666 moaA molybdenum cofa 95.4 1.1 2.5E-05 45.2 17.6 165 144-320 42-219 (334)
191 PRK13209 L-xylulose 5-phosphat 95.4 1.2 2.6E-05 43.6 17.2 200 145-385 21-247 (283)
192 TIGR01361 DAHP_synth_Bsub phos 95.3 0.88 1.9E-05 44.9 16.1 179 146-354 37-232 (260)
193 smart00729 Elp3 Elongator prot 95.3 1.1 2.3E-05 40.5 15.6 147 144-299 29-189 (216)
194 COG0269 SgbH 3-hexulose-6-phos 95.3 0.4 8.8E-06 46.0 12.9 168 144-350 12-189 (217)
195 TIGR00539 hemN_rel putative ox 95.3 0.94 2E-05 46.4 16.7 143 145-296 32-186 (360)
196 PRK07455 keto-hydroxyglutarate 95.2 2.8 6.1E-05 39.2 18.5 154 146-350 22-177 (187)
197 COG0320 LipA Lipoate synthase 95.2 0.87 1.9E-05 45.3 15.1 160 142-313 94-274 (306)
198 COG0274 DeoC Deoxyribose-phosp 95.2 0.49 1.1E-05 45.8 13.1 111 262-383 63-181 (228)
199 TIGR02026 BchE magnesium-proto 95.1 0.6 1.3E-05 50.1 15.3 156 145-318 222-390 (497)
200 COG2513 PrpB PEP phosphonomuta 95.1 0.75 1.6E-05 46.0 14.7 137 204-350 28-183 (289)
201 PRK00278 trpC indole-3-glycero 95.0 2.4 5.1E-05 41.8 18.0 163 145-350 67-237 (260)
202 TIGR01303 IMP_DH_rel_1 IMP deh 94.9 0.26 5.7E-06 52.7 11.7 78 277-360 224-301 (475)
203 PRK12858 tagatose 1,6-diphosph 94.9 1.2 2.5E-05 45.9 15.9 137 206-348 111-269 (340)
204 PF13714 PEP_mutase: Phosphoen 94.8 0.91 2E-05 44.3 14.3 180 154-352 22-218 (238)
205 PRK09234 fbiC FO synthase; Rev 94.8 4.3 9.4E-05 46.6 21.6 226 142-385 99-366 (843)
206 cd01320 ADA Adenosine deaminas 94.8 2.6 5.7E-05 42.2 18.1 132 205-349 77-213 (325)
207 cd04732 HisA HisA. Phosphorib 94.7 2.1 4.6E-05 40.6 16.6 180 147-350 28-216 (234)
208 PRK06852 aldolase; Validated 94.7 0.54 1.2E-05 47.5 12.9 131 206-351 120-263 (304)
209 cd02810 DHOD_DHPD_FMN Dihydroo 94.7 3.9 8.5E-05 40.3 19.0 82 207-300 117-199 (289)
210 cd04733 OYE_like_2_FMN Old yel 94.7 0.69 1.5E-05 47.1 13.9 135 208-350 156-319 (338)
211 TIGR02320 PEP_mutase phosphoen 94.7 0.62 1.3E-05 46.7 13.2 107 235-352 61-188 (285)
212 cd00423 Pterin_binding Pterin 94.7 3.4 7.4E-05 40.5 18.3 134 144-296 20-171 (258)
213 cd01335 Radical_SAM Radical SA 94.7 1.7 3.7E-05 38.6 15.0 133 148-290 31-168 (204)
214 PRK13347 coproporphyrinogen II 94.7 1.4 3E-05 46.7 16.6 110 182-298 122-240 (453)
215 cd04740 DHOD_1B_like Dihydroor 94.7 0.69 1.5E-05 45.9 13.5 102 237-352 74-185 (296)
216 PRK00043 thiE thiamine-phospha 94.6 1.2 2.6E-05 41.5 14.4 154 150-350 23-185 (212)
217 TIGR02668 moaA_archaeal probab 94.6 3 6.6E-05 41.4 17.9 135 144-292 39-179 (302)
218 cd02803 OYE_like_FMN_family Ol 94.6 1.5 3.3E-05 43.9 15.9 138 207-350 147-308 (327)
219 cd00959 DeoC 2-deoxyribose-5-p 94.6 3 6.6E-05 39.3 16.9 141 207-381 23-170 (203)
220 TIGR01290 nifB nitrogenase cof 94.5 6.5 0.00014 41.8 21.1 169 144-320 59-260 (442)
221 PRK13523 NADPH dehydrogenase N 94.5 1.2 2.5E-05 45.7 14.9 136 207-350 148-302 (337)
222 cd00377 ICL_PEPM Members of th 94.5 1.9 4.2E-05 42.0 15.7 188 153-354 21-227 (243)
223 PRK14057 epimerase; Provisiona 94.5 1.2 2.6E-05 44.0 14.2 172 149-352 33-220 (254)
224 cd00429 RPE Ribulose-5-phospha 94.4 4.1 9E-05 37.7 18.1 172 145-350 9-191 (211)
225 cd04740 DHOD_1B_like Dihydroor 94.4 4 8.6E-05 40.5 18.2 126 208-353 109-260 (296)
226 TIGR01579 MiaB-like-C MiaB-lik 94.4 2.3 5E-05 44.4 17.3 143 144-295 166-323 (414)
227 TIGR03849 arch_ComA phosphosul 94.4 0.36 7.7E-06 47.1 10.2 149 212-383 22-184 (237)
228 PF03102 NeuB: NeuB family; I 94.3 2.2 4.9E-05 41.7 15.9 124 203-356 78-206 (241)
229 cd02933 OYE_like_FMN Old yello 94.3 1.3 2.8E-05 45.4 14.8 138 207-350 158-311 (338)
230 PF01261 AP_endonuc_2: Xylose 94.3 0.094 2E-06 47.9 6.0 169 155-333 2-196 (213)
231 PRK08446 coproporphyrinogen II 94.3 1.9 4.1E-05 44.2 15.9 106 183-296 71-184 (350)
232 PRK12677 xylose isomerase; Pro 94.3 2.9 6.4E-05 43.6 17.5 113 149-264 32-179 (384)
233 TIGR00538 hemN oxygen-independ 94.3 3.9 8.5E-05 43.4 18.8 149 161-318 102-274 (455)
234 TIGR00542 hxl6Piso_put hexulos 94.2 2.7 5.8E-05 41.2 16.4 142 207-385 100-242 (279)
235 PRK07259 dihydroorotate dehydr 94.2 1.1 2.4E-05 44.6 13.7 103 237-352 76-188 (301)
236 cd04731 HisF The cyclase subun 94.1 5.4 0.00012 38.4 18.0 203 147-380 26-241 (243)
237 PRK09249 coproporphyrinogen II 94.1 3.1 6.8E-05 44.1 17.7 98 194-298 137-239 (453)
238 cd04722 TIM_phosphate_binding 94.0 4.2 9.2E-05 36.2 17.7 133 204-357 15-147 (200)
239 PRK09358 adenosine deaminase; 94.0 5.4 0.00012 40.3 18.5 133 205-350 85-223 (340)
240 PRK05799 coproporphyrinogen II 93.9 1.4 3E-05 45.3 14.3 86 204-296 99-185 (374)
241 TIGR01211 ELP3 histone acetylt 93.9 7.9 0.00017 42.1 20.4 116 204-328 206-341 (522)
242 TIGR00126 deoC deoxyribose-pho 93.9 6.3 0.00014 37.8 18.6 134 262-406 56-203 (211)
243 PRK05283 deoxyribose-phosphate 93.9 5.4 0.00012 39.5 17.5 135 262-406 69-223 (257)
244 PF00834 Ribul_P_3_epim: Ribul 93.7 0.043 9.2E-07 52.2 2.5 162 151-350 15-191 (201)
245 PRK05628 coproporphyrinogen II 93.7 3.2 6.9E-05 42.8 16.4 108 182-296 78-194 (375)
246 PRK08599 coproporphyrinogen II 93.7 2.8 6E-05 43.2 16.0 95 195-296 87-186 (377)
247 PRK05660 HemN family oxidoredu 93.7 3.9 8.5E-05 42.3 17.1 108 182-296 77-193 (378)
248 cd02932 OYE_YqiM_FMN Old yello 93.6 2.4 5.3E-05 43.0 15.2 135 207-350 160-317 (336)
249 TIGR00587 nfo apurinic endonuc 93.6 7.4 0.00016 38.3 18.3 201 151-382 14-249 (274)
250 PTZ00170 D-ribulose-5-phosphat 93.6 0.39 8.5E-06 46.3 9.0 99 274-386 16-117 (228)
251 PRK06843 inosine 5-monophospha 93.6 0.85 1.8E-05 47.9 12.0 72 279-359 154-225 (404)
252 cd00377 ICL_PEPM Members of th 93.6 1.3 2.9E-05 43.1 12.7 133 205-351 20-178 (243)
253 PTZ00314 inosine-5'-monophosph 93.6 1.9 4.1E-05 46.5 15.0 157 150-341 242-407 (495)
254 cd02810 DHOD_DHPD_FMN Dihydroo 93.5 2 4.4E-05 42.3 14.2 78 275-353 109-196 (289)
255 PRK13813 orotidine 5'-phosphat 93.5 0.66 1.4E-05 43.8 10.3 171 145-351 13-190 (215)
256 PRK14338 (dimethylallyl)adenos 93.5 2.3 4.9E-05 45.3 15.3 144 144-295 183-340 (459)
257 PRK05581 ribulose-phosphate 3- 93.4 6.9 0.00015 36.7 18.0 172 145-350 13-195 (220)
258 TIGR03551 F420_cofH 7,8-dideme 93.4 0.81 1.8E-05 46.7 11.4 77 273-351 69-156 (343)
259 TIGR03569 NeuB_NnaB N-acetylne 93.4 7.6 0.00016 39.8 18.2 176 146-352 14-222 (329)
260 TIGR01212 radical SAM protein, 93.4 3.1 6.6E-05 41.8 15.3 51 241-296 162-212 (302)
261 TIGR02317 prpB methylisocitrat 93.4 1.5 3.1E-05 44.1 12.8 135 206-350 25-178 (285)
262 TIGR00343 pyridoxal 5'-phospha 93.4 2.6 5.6E-05 42.2 14.3 68 277-356 77-144 (287)
263 PF04131 NanE: Putative N-acet 93.3 0.45 9.8E-06 44.9 8.5 90 282-384 56-145 (192)
264 COG1830 FbaB DhnA-type fructos 93.3 1.5 3.1E-05 43.5 12.3 128 206-351 102-235 (265)
265 cd04735 OYE_like_4_FMN Old yel 93.3 2.7 5.8E-05 43.1 15.0 139 207-350 150-310 (353)
266 PRK13745 anaerobic sulfatase-m 93.3 6.6 0.00014 41.1 18.1 142 144-296 47-200 (412)
267 PRK08673 3-deoxy-7-phosphohept 93.2 11 0.00025 38.6 19.4 181 146-355 105-301 (335)
268 PRK14332 (dimethylallyl)adenos 93.2 3.9 8.4E-05 43.5 16.4 140 144-294 182-335 (449)
269 cd06556 ICL_KPHMT Members of t 93.2 7.1 0.00015 38.2 17.0 137 195-351 12-174 (240)
270 TIGR03822 AblA_like_2 lysine-2 93.2 11 0.00024 38.2 19.0 158 144-321 118-296 (321)
271 PRK07565 dihydroorotate dehydr 93.1 2 4.3E-05 43.7 13.6 105 236-353 85-197 (334)
272 cd01321 ADGF Adenosine deamina 93.1 6.7 0.00015 40.3 17.5 160 207-385 76-248 (345)
273 PRK06294 coproporphyrinogen II 93.0 2 4.3E-05 44.4 13.7 107 183-296 78-189 (370)
274 PRK12738 kbaY tagatose-bisphos 93.0 1.4 3.1E-05 44.1 12.1 101 244-357 6-110 (286)
275 PRK02083 imidazole glycerol ph 93.0 9.4 0.0002 37.1 19.1 204 147-386 29-251 (253)
276 TIGR00089 RNA modification enz 93.0 5.7 0.00012 41.7 17.2 144 144-296 167-325 (429)
277 PRK14325 (dimethylallyl)adenos 92.9 5.4 0.00012 42.1 17.1 144 144-295 175-334 (444)
278 cd04739 DHOD_like Dihydroorota 92.9 2.3 5E-05 43.2 13.7 104 236-352 83-194 (325)
279 PRK05904 coproporphyrinogen II 92.9 7.4 0.00016 40.0 17.6 107 183-296 76-189 (353)
280 COG0535 Predicted Fe-S oxidore 92.8 5.4 0.00012 39.6 16.2 141 143-296 46-192 (347)
281 TIGR01302 IMP_dehydrog inosine 92.8 1.4 3.1E-05 46.7 12.5 162 148-341 223-390 (450)
282 PRK13585 1-(5-phosphoribosyl)- 92.8 9.4 0.0002 36.5 17.5 198 148-379 32-239 (241)
283 PF02679 ComA: (2R)-phospho-3- 92.7 0.45 9.8E-06 46.6 7.9 155 205-383 28-196 (244)
284 PRK14334 (dimethylallyl)adenos 92.7 2.8 6E-05 44.4 14.5 146 144-295 166-322 (440)
285 cd00947 TBP_aldolase_IIB Tagat 92.7 1.5 3.3E-05 43.8 11.7 101 245-358 2-106 (276)
286 TIGR00559 pdxJ pyridoxine 5'-p 92.6 0.39 8.4E-06 46.7 7.2 116 184-316 111-236 (237)
287 PRK12737 gatY tagatose-bisphos 92.6 2.1 4.6E-05 42.9 12.7 103 244-359 6-112 (284)
288 TIGR01501 MthylAspMutase methy 92.6 4.1 8.9E-05 36.4 13.2 113 150-314 18-130 (134)
289 PLN02623 pyruvate kinase 92.5 13 0.00028 41.0 19.4 248 144-411 275-553 (581)
290 PRK08207 coproporphyrinogen II 92.5 2.8 6.1E-05 45.1 14.4 108 204-318 269-391 (488)
291 PRK11320 prpB 2-methylisocitra 92.5 2.1 4.6E-05 43.0 12.6 136 205-350 28-183 (292)
292 cd04727 pdxS PdxS is a subunit 92.5 1.9 4.2E-05 43.0 12.0 69 276-356 74-142 (283)
293 PRK09195 gatY tagatose-bisphos 92.4 1.6 3.5E-05 43.8 11.5 102 244-358 6-111 (284)
294 PRK09196 fructose-1,6-bisphosp 92.4 1.8 3.9E-05 44.6 12.1 101 243-355 5-109 (347)
295 cd02930 DCR_FMN 2,4-dienoyl-Co 92.4 5.6 0.00012 40.8 15.8 136 207-350 143-303 (353)
296 TIGR00262 trpA tryptophan synt 92.3 10 0.00022 37.3 16.9 151 207-381 30-195 (256)
297 PRK12857 fructose-1,6-bisphosp 92.2 1.6 3.6E-05 43.7 11.4 120 243-383 5-128 (284)
298 PRK14340 (dimethylallyl)adenos 92.2 2.1 4.6E-05 45.4 12.9 141 144-295 177-333 (445)
299 PRK10605 N-ethylmaleimide redu 92.1 3.4 7.4E-05 42.7 14.0 141 208-359 166-322 (362)
300 PRK08208 coproporphyrinogen II 92.1 4.2 9.1E-05 42.9 14.9 88 204-298 141-229 (430)
301 PRK05835 fructose-bisphosphate 92.1 1.6 3.4E-05 44.3 11.2 120 244-383 5-128 (307)
302 PRK07379 coproporphyrinogen II 92.1 3.3 7.1E-05 43.3 13.9 107 183-296 86-201 (400)
303 PTZ00314 inosine-5'-monophosph 92.1 1.8 3.9E-05 46.7 12.2 70 280-355 243-312 (495)
304 cd04734 OYE_like_3_FMN Old yel 92.1 6.7 0.00015 40.1 16.0 137 208-350 148-312 (343)
305 cd02072 Glm_B12_BD B12 binding 92.0 5 0.00011 35.6 13.0 109 150-311 16-125 (128)
306 cd00381 IMPDH IMPDH: The catal 92.0 3.3 7.3E-05 42.1 13.6 130 148-297 93-226 (325)
307 COG2100 Predicted Fe-S oxidore 92.0 2 4.3E-05 43.9 11.5 127 260-407 117-257 (414)
308 TIGR03572 WbuZ glycosyl amidat 92.0 12 0.00025 35.7 18.6 180 148-350 30-224 (232)
309 PRK04165 acetyl-CoA decarbonyl 91.9 9.5 0.00021 40.7 17.2 123 145-301 102-236 (450)
310 PF13714 PEP_mutase: Phosphoen 91.9 2.2 4.8E-05 41.6 11.7 139 203-350 18-172 (238)
311 PRK07094 biotin synthase; Prov 91.9 14 0.0003 37.0 17.9 141 274-420 70-226 (323)
312 COG3473 Maleate cis-trans isom 91.9 7.5 0.00016 37.5 14.6 144 151-320 57-204 (238)
313 TIGR03700 mena_SCO4494 putativ 91.9 1.6 3.6E-05 44.7 11.3 77 273-351 78-165 (351)
314 TIGR01521 FruBisAldo_II_B fruc 91.9 1.5 3.2E-05 45.2 10.8 100 244-355 4-107 (347)
315 COG3623 SgaU Putative L-xylulo 91.9 6.9 0.00015 38.4 14.5 208 142-388 15-253 (287)
316 COG0191 Fba Fructose/tagatose 91.8 1.1 2.4E-05 44.8 9.5 119 244-383 6-129 (286)
317 PF00701 DHDPS: Dihydrodipicol 91.7 7.6 0.00017 38.4 15.6 43 276-318 82-125 (289)
318 PRK02412 aroD 3-dehydroquinate 91.7 14 0.00031 36.1 24.8 203 146-383 26-250 (253)
319 PRK14331 (dimethylallyl)adenos 91.6 5 0.00011 42.4 14.8 144 144-296 174-331 (437)
320 TIGR02321 Pphn_pyruv_hyd phosp 91.5 4.1 8.9E-05 41.0 13.4 207 154-383 28-257 (290)
321 PLN02591 tryptophan synthase 91.5 9.4 0.0002 37.6 15.6 152 207-381 22-186 (250)
322 PRK14339 (dimethylallyl)adenos 91.5 20 0.00044 37.6 20.0 144 144-295 155-315 (420)
323 PTZ00372 endonuclease 4-like p 91.5 16 0.00035 38.6 18.2 146 206-380 223-378 (413)
324 PRK14335 (dimethylallyl)adenos 91.5 9.5 0.00021 40.6 16.9 144 144-295 180-343 (455)
325 PRK14337 (dimethylallyl)adenos 91.5 7.5 0.00016 41.2 16.1 155 144-306 176-351 (446)
326 TIGR01430 aden_deam adenosine 91.4 14 0.0003 37.0 17.3 132 206-350 77-213 (324)
327 PRK14336 (dimethylallyl)adenos 91.4 7.2 0.00016 41.0 15.7 144 144-295 152-309 (418)
328 TIGR01858 tag_bisphos_ald clas 91.4 2.7 5.8E-05 42.1 11.8 101 244-357 4-108 (282)
329 PRK13111 trpA tryptophan synth 91.3 9.4 0.0002 37.7 15.5 152 207-381 32-197 (258)
330 PRK14327 (dimethylallyl)adenos 91.2 9.4 0.0002 41.4 16.6 145 144-296 240-398 (509)
331 PRK07360 FO synthase subunit 2 91.2 1.7 3.7E-05 44.9 10.6 78 272-351 89-178 (371)
332 PRK04180 pyridoxal biosynthesi 91.2 1.8 4E-05 43.4 10.3 124 201-353 24-148 (293)
333 COG2185 Sbm Methylmalonyl-CoA 91.2 4.4 9.6E-05 36.6 11.8 95 151-299 30-124 (143)
334 TIGR02313 HpaI-NOT-DapA 2,4-di 91.1 18 0.00038 36.2 18.0 173 144-350 17-203 (294)
335 cd04724 Tryptophan_synthase_al 91.1 12 0.00025 36.4 15.8 155 206-382 19-185 (242)
336 PF01702 TGT: Queuine tRNA-rib 91.0 4.6 9.9E-05 39.0 12.8 81 272-356 63-144 (238)
337 PF00809 Pterin_bind: Pterin b 91.0 8.7 0.00019 36.5 14.4 154 144-316 15-189 (210)
338 cd01572 QPRTase Quinolinate ph 91.0 3.2 6.9E-05 41.2 11.9 106 272-398 124-245 (268)
339 PRK13399 fructose-1,6-bisphosp 91.0 2 4.3E-05 44.3 10.6 102 243-356 5-110 (347)
340 cd04722 TIM_phosphate_binding 90.9 11 0.00024 33.5 16.8 172 148-352 12-198 (200)
341 PRK15108 biotin synthase; Prov 90.9 1.9 4.2E-05 44.2 10.6 115 235-359 76-197 (345)
342 cd01299 Met_dep_hydrolase_A Me 90.9 8.4 0.00018 38.5 15.1 90 274-385 117-217 (342)
343 TIGR03151 enACPred_II putative 90.9 11 0.00024 38.1 15.8 122 202-361 74-200 (307)
344 cd00954 NAL N-Acetylneuraminic 90.9 6.3 0.00014 39.1 14.0 103 207-331 60-167 (288)
345 cd00952 CHBPH_aldolase Trans-o 90.8 1.8 3.9E-05 43.6 10.2 83 272-354 24-111 (309)
346 TIGR03128 RuMP_HxlA 3-hexulose 90.8 1.4 3E-05 41.2 8.8 99 273-389 8-108 (206)
347 PRK14330 (dimethylallyl)adenos 90.8 13 0.00027 39.3 16.8 144 144-295 168-325 (434)
348 PRK12457 2-dehydro-3-deoxyphos 90.8 19 0.00042 36.0 17.8 183 146-355 28-239 (281)
349 cd01568 QPRTase_NadC Quinolina 90.8 2.7 5.9E-05 41.6 11.2 107 272-398 123-246 (269)
350 TIGR03581 EF_0839 conserved hy 90.8 2.4 5.2E-05 40.9 10.2 89 207-317 141-236 (236)
351 cd02940 DHPD_FMN Dihydropyrimi 90.7 14 0.0003 37.0 16.3 77 274-351 110-198 (299)
352 TIGR02321 Pphn_pyruv_hyd phosp 90.7 5.5 0.00012 40.0 13.4 138 203-350 24-183 (290)
353 PRK10481 hypothetical protein; 90.7 8.6 0.00019 37.3 14.2 130 132-304 60-195 (224)
354 TIGR02319 CPEP_Pphonmut carbox 90.7 4.2 9.1E-05 41.0 12.5 136 205-350 27-182 (294)
355 PRK15063 isocitrate lyase; Pro 90.5 10 0.00023 40.1 15.6 200 205-420 165-401 (428)
356 PRK13758 anaerobic sulfatase-m 90.5 11 0.00023 38.6 15.6 163 144-317 38-223 (370)
357 PRK08508 biotin synthase; Prov 90.5 1.2 2.6E-05 44.2 8.4 135 235-385 40-181 (279)
358 TIGR01037 pyrD_sub1_fam dihydr 90.4 20 0.00043 35.7 17.1 104 236-352 74-188 (300)
359 PRK14024 phosphoribosyl isomer 90.3 18 0.0004 35.0 16.9 196 149-378 33-238 (241)
360 PLN03033 2-dehydro-3-deoxyphos 90.3 22 0.00047 35.8 17.3 204 146-380 28-266 (290)
361 TIGR01496 DHPS dihydropteroate 90.3 2.4 5.2E-05 41.8 10.2 78 270-353 15-102 (257)
362 cd04730 NPD_like 2-Nitropropan 90.3 4.8 0.00011 38.2 12.2 110 205-353 71-185 (236)
363 cd00951 KDGDH 5-dehydro-4-deox 90.3 2.2 4.7E-05 42.5 10.1 81 272-352 16-100 (289)
364 PF01116 F_bP_aldolase: Fructo 90.3 1.2 2.5E-05 44.8 8.1 122 241-383 2-127 (287)
365 PF04055 Radical_SAM: Radical 90.3 3.2 6.9E-05 35.8 10.1 131 143-285 26-165 (166)
366 TIGR01431 adm_rel adenosine de 90.3 26 0.00055 37.8 18.7 159 208-384 204-373 (479)
367 PRK03170 dihydrodipicolinate s 90.2 2.1 4.6E-05 42.5 9.9 83 272-354 17-104 (292)
368 TIGR01125 MiaB-like tRNA modif 90.2 17 0.00037 38.2 17.2 144 144-295 163-320 (430)
369 cd04747 OYE_like_5_FMN Old yel 90.1 9.9 0.00021 39.4 15.0 140 208-350 151-325 (361)
370 cd02931 ER_like_FMN Enoate red 90.1 13 0.00028 38.7 16.0 137 208-350 157-332 (382)
371 PRK06801 hypothetical protein; 90.1 2.8 6.1E-05 42.0 10.7 100 243-355 5-108 (286)
372 PF03932 CutC: CutC family; I 90.0 18 0.00039 34.5 15.7 169 154-353 13-199 (201)
373 TIGR01574 miaB-methiolase tRNA 89.9 17 0.00036 38.4 17.0 145 144-296 173-333 (438)
374 TIGR02631 xylA_Arthro xylose i 89.9 27 0.00059 36.4 20.3 219 146-385 30-279 (382)
375 PLN02495 oxidoreductase, actin 89.9 12 0.00025 39.3 15.4 108 237-357 97-221 (385)
376 cd00952 CHBPH_aldolase Trans-o 89.9 8.4 0.00018 38.8 14.1 75 242-326 90-168 (309)
377 TIGR01304 IMP_DH_rel_2 IMP deh 89.9 2.4 5.1E-05 44.1 10.2 89 242-351 119-214 (369)
378 COG0821 gcpE 1-hydroxy-2-methy 89.8 26 0.00057 36.0 19.8 231 146-418 34-300 (361)
379 TIGR01302 IMP_dehydrog inosine 89.8 3.3 7.2E-05 44.0 11.5 72 278-355 224-295 (450)
380 PRK07807 inosine 5-monophospha 89.8 7.6 0.00016 41.8 14.3 218 148-401 226-463 (479)
381 PRK06843 inosine 5-monophospha 89.7 7 0.00015 41.1 13.6 213 148-398 152-383 (404)
382 PRK05265 pyridoxine 5'-phospha 89.6 1.3 2.8E-05 43.2 7.6 117 183-316 113-237 (239)
383 PRK03620 5-dehydro-4-deoxygluc 89.5 2.7 5.8E-05 42.2 10.1 82 271-352 22-107 (303)
384 TIGR01859 fruc_bis_ald_ fructo 89.5 6.5 0.00014 39.3 12.7 100 244-355 4-108 (282)
385 PRK05985 cytosine deaminase; P 89.4 28 0.0006 35.8 18.2 199 152-375 102-314 (391)
386 PRK08185 hypothetical protein; 89.3 4.7 0.0001 40.5 11.5 99 245-356 2-103 (283)
387 cd00003 PNPsynthase Pyridoxine 89.3 2.2 4.9E-05 41.5 8.9 99 183-297 110-211 (234)
388 PRK07107 inosine 5-monophospha 89.2 8.8 0.00019 41.5 14.3 221 143-400 236-476 (502)
389 PF04476 DUF556: Protein of un 89.2 3.3 7.2E-05 40.3 9.9 144 147-315 66-234 (235)
390 cd00950 DHDPS Dihydrodipicolin 89.1 2.8 6.1E-05 41.3 9.8 83 272-354 16-103 (284)
391 PRK14326 (dimethylallyl)adenos 89.1 20 0.00042 38.8 16.9 144 144-295 185-342 (502)
392 PRK11572 copper homeostasis pr 89.1 24 0.00053 34.7 18.7 172 154-356 14-201 (248)
393 cd00956 Transaldolase_FSA Tran 89.1 12 0.00026 35.7 13.8 150 203-388 8-160 (211)
394 TIGR00683 nanA N-acetylneurami 89.1 3.1 6.7E-05 41.5 10.1 83 271-353 15-103 (290)
395 PRK05567 inosine 5'-monophosph 88.9 3 6.5E-05 44.7 10.6 69 280-354 230-298 (486)
396 TIGR01064 pyruv_kin pyruvate k 88.9 32 0.00069 37.0 18.2 250 144-412 168-452 (473)
397 COG2876 AroA 3-deoxy-D-arabino 88.9 27 0.00058 34.9 16.1 206 123-357 26-253 (286)
398 PRK00112 tgt queuine tRNA-ribo 88.9 15 0.00032 38.2 15.2 93 270-372 188-281 (366)
399 PRK00748 1-(5-phosphoribosyl)- 88.8 22 0.00047 33.7 17.6 178 148-350 30-217 (233)
400 PRK03170 dihydrodipicolinate s 88.8 11 0.00025 37.2 14.0 81 241-331 82-166 (292)
401 PF01261 AP_endonuc_2: Xylose 88.8 8.6 0.00019 34.8 12.2 118 207-333 1-137 (213)
402 cd02801 DUS_like_FMN Dihydrour 88.8 9.2 0.0002 36.1 12.8 134 205-350 71-210 (231)
403 TIGR03249 KdgD 5-dehydro-4-deo 88.8 3.3 7.1E-05 41.4 10.1 81 272-352 21-105 (296)
404 COG2100 Predicted Fe-S oxidore 88.8 19 0.00041 37.0 15.2 139 144-291 140-285 (414)
405 cd04728 ThiG Thiazole synthase 88.8 5.1 0.00011 39.4 11.0 164 152-350 24-201 (248)
406 TIGR00683 nanA N-acetylneurami 88.6 12 0.00025 37.4 13.9 82 241-332 82-168 (290)
407 PRK08255 salicylyl-CoA 5-hydro 88.6 11 0.00024 42.7 15.3 158 208-385 558-737 (765)
408 TIGR00222 panB 3-methyl-2-oxob 88.5 19 0.00042 35.8 15.0 112 193-318 13-128 (263)
409 PRK13533 7-cyano-7-deazaguanin 88.5 9.6 0.00021 41.1 13.9 135 207-356 108-250 (487)
410 PRK14041 oxaloacetate decarbox 88.5 4.3 9.2E-05 43.6 11.2 22 388-409 179-200 (467)
411 PRK00507 deoxyribose-phosphate 88.4 23 0.0005 34.2 15.3 111 262-383 60-177 (221)
412 PRK05718 keto-hydroxyglutarate 88.4 2.8 6.1E-05 40.2 8.9 70 274-352 24-93 (212)
413 PRK14328 (dimethylallyl)adenos 88.4 27 0.00058 36.9 17.1 143 144-294 175-331 (439)
414 TIGR00736 nifR3_rel_arch TIM-b 88.4 26 0.00056 34.1 16.6 139 203-353 78-220 (231)
415 cd00408 DHDPS-like Dihydrodipi 88.4 27 0.00058 34.2 21.9 191 144-381 14-216 (281)
416 PRK08898 coproporphyrinogen II 88.2 11 0.00024 39.2 14.0 105 183-296 93-207 (394)
417 PRK08444 hypothetical protein; 88.1 2 4.4E-05 44.3 8.3 75 272-352 78-167 (353)
418 PRK09058 coproporphyrinogen II 88.1 11 0.00023 40.2 13.9 107 183-296 134-249 (449)
419 PLN02417 dihydrodipicolinate s 88.0 3.9 8.4E-05 40.6 10.0 101 271-381 16-121 (280)
420 PRK04147 N-acetylneuraminate l 88.0 3.7 8E-05 40.9 9.9 82 272-353 19-106 (293)
421 TIGR02313 HpaI-NOT-DapA 2,4-di 88.0 3.7 8.1E-05 41.0 9.9 82 272-353 16-102 (294)
422 PF07745 Glyco_hydro_53: Glyco 88.0 22 0.00047 36.6 15.5 157 207-380 30-222 (332)
423 cd02940 DHPD_FMN Dihydropyrimi 88.0 8.7 0.00019 38.4 12.6 90 203-302 111-205 (299)
424 COG1902 NemA NADH:flavin oxido 88.0 19 0.00041 37.4 15.3 142 208-359 156-319 (363)
425 PF07302 AroM: AroM protein; 88.0 15 0.00031 35.7 13.4 75 216-315 126-200 (221)
426 PRK04147 N-acetylneuraminate l 88.0 30 0.00065 34.4 21.2 189 144-381 20-222 (293)
427 PRK13209 L-xylulose 5-phosphat 87.9 11 0.00023 36.8 13.0 102 206-315 61-177 (283)
428 cd00950 DHDPS Dihydrodipicolin 87.9 12 0.00026 36.8 13.5 99 207-327 59-160 (284)
429 cd06811 PLPDE_III_yhfX_like Ty 87.9 35 0.00075 35.4 17.3 178 151-362 67-265 (382)
430 PRK09057 coproporphyrinogen II 87.9 24 0.00051 36.6 16.1 96 195-297 91-190 (380)
431 PRK00311 panB 3-methyl-2-oxobu 87.8 17 0.00036 36.2 14.2 138 194-350 14-178 (264)
432 TIGR03249 KdgD 5-dehydro-4-deo 87.8 20 0.00044 35.7 15.0 72 244-326 88-161 (296)
433 TIGR03821 AblA_like_1 lysine-2 87.8 31 0.00067 35.1 16.5 158 144-321 124-302 (321)
434 TIGR00674 dapA dihydrodipicoli 87.8 4.1 9E-05 40.3 10.0 83 272-354 14-101 (285)
435 TIGR03239 GarL 2-dehydro-3-deo 87.8 27 0.00059 34.2 15.6 82 134-222 7-92 (249)
436 TIGR00674 dapA dihydrodipicoli 87.7 12 0.00025 37.1 13.2 103 207-331 57-163 (285)
437 PRK14333 (dimethylallyl)adenos 87.7 12 0.00025 39.8 13.9 144 144-295 176-340 (448)
438 TIGR01305 GMP_reduct_1 guanosi 87.6 15 0.00032 37.8 13.9 129 146-297 105-241 (343)
439 PRK14329 (dimethylallyl)adenos 87.6 21 0.00045 38.2 15.9 144 144-295 196-358 (467)
440 PRK02048 4-hydroxy-3-methylbut 87.6 26 0.00056 38.7 16.4 163 144-317 37-225 (611)
441 PRK07709 fructose-bisphosphate 87.4 9.8 0.00021 38.2 12.4 102 243-356 5-112 (285)
442 TIGR02990 ectoine_eutA ectoine 87.3 16 0.00035 35.6 13.6 177 116-320 22-206 (239)
443 PF04273 DUF442: Putative phos 87.2 2.8 6E-05 36.1 7.3 77 248-331 20-96 (110)
444 PRK00115 hemE uroporphyrinogen 87.2 15 0.00032 37.4 14.0 146 146-317 184-343 (346)
445 TIGR01303 IMP_DH_rel_1 IMP deh 87.2 7.8 0.00017 41.6 12.3 210 148-400 224-460 (475)
446 PRK02227 hypothetical protein; 87.2 4.4 9.5E-05 39.6 9.5 148 145-317 64-235 (238)
447 cd00381 IMPDH IMPDH: The catal 87.2 9.5 0.00021 38.8 12.4 71 279-355 95-165 (325)
448 TIGR00167 cbbA ketose-bisphosp 87.1 8.6 0.00019 38.6 11.9 105 243-359 5-115 (288)
449 TIGR03849 arch_ComA phosphosul 86.9 4.7 0.0001 39.4 9.5 107 207-330 77-194 (237)
450 TIGR02082 metH 5-methyltetrahy 86.9 44 0.00095 40.1 19.1 220 151-408 151-440 (1178)
451 TIGR01578 MiaB-like-B MiaB-lik 86.9 20 0.00043 37.7 15.0 142 144-296 161-319 (420)
452 PRK05458 guanosine 5'-monophos 86.8 11 0.00024 38.6 12.6 75 275-356 95-171 (326)
453 PRK11613 folP dihydropteroate 86.8 33 0.00071 34.4 15.7 125 209-359 46-192 (282)
454 PF03740 PdxJ: Pyridoxal phosp 86.7 2.7 5.9E-05 41.1 7.8 74 183-259 111-189 (239)
455 cd00954 NAL N-Acetylneuraminic 86.7 5 0.00011 39.8 10.0 81 272-352 16-102 (288)
456 PF01645 Glu_synthase: Conserv 86.6 3.7 8.1E-05 42.6 9.2 70 288-358 170-241 (368)
457 PRK13210 putative L-xylulose 5 86.6 26 0.00055 34.0 14.8 122 205-332 20-157 (284)
458 cd00958 DhnA Class I fructose- 86.6 4.8 0.0001 38.5 9.5 80 274-353 73-163 (235)
459 PF01791 DeoC: DeoC/LacD famil 86.6 10 0.00022 36.4 11.8 163 206-403 24-217 (236)
460 TIGR02351 thiH thiazole biosyn 86.5 13 0.00029 38.3 13.3 77 274-357 103-183 (366)
461 cd00408 DHDPS-like Dihydrodipi 86.5 31 0.00067 33.8 15.4 98 207-319 24-122 (281)
462 COG0854 PdxJ Pyridoxal phospha 86.5 1.5 3.2E-05 42.4 5.7 122 185-317 113-240 (243)
463 cd00945 Aldolase_Class_I Class 86.4 25 0.00053 31.8 15.7 81 275-355 63-151 (201)
464 PLN02389 biotin synthase 86.2 6.4 0.00014 41.1 10.8 130 236-382 117-254 (379)
465 cd00946 FBP_aldolase_IIA Class 86.2 6.8 0.00015 40.4 10.8 121 242-383 2-154 (345)
466 TIGR00492 alr alanine racemase 86.2 29 0.00064 35.5 15.6 112 151-296 43-159 (367)
467 cd00956 Transaldolase_FSA Tran 86.2 20 0.00043 34.3 13.3 121 145-297 61-185 (211)
468 PRK08649 inosine 5-monophospha 86.1 7.3 0.00016 40.5 11.1 75 148-223 141-217 (368)
469 PF04481 DUF561: Protein of un 86.1 26 0.00055 34.1 13.7 125 208-369 34-167 (242)
470 PRK05926 hypothetical protein; 86.0 17 0.00037 37.8 13.7 77 272-353 97-186 (370)
471 PRK09240 thiH thiamine biosynt 86.0 15 0.00032 38.0 13.3 78 274-356 104-183 (371)
472 TIGR01163 rpe ribulose-phospha 86.0 23 0.0005 32.8 13.5 109 205-350 15-130 (210)
473 PRK08195 4-hyroxy-2-oxovalerat 86.0 13 0.00029 38.0 12.8 16 389-404 171-186 (337)
474 PRK07259 dihydroorotate dehydr 85.9 15 0.00033 36.6 12.9 159 145-317 101-282 (301)
475 cd02929 TMADH_HD_FMN Trimethyl 85.8 20 0.00044 37.1 14.2 136 207-350 156-316 (370)
476 TIGR01362 KDO8P_synth 3-deoxy- 85.8 39 0.00085 33.5 17.5 182 146-355 14-223 (258)
477 PRK07084 fructose-bisphosphate 85.8 4.5 9.8E-05 41.3 9.1 105 241-357 9-121 (321)
478 COG3142 CutC Uncharacterized p 85.8 9.5 0.00021 37.2 10.7 175 152-356 12-203 (241)
479 TIGR00542 hxl6Piso_put hexulos 85.7 18 0.0004 35.2 13.3 74 237-315 89-172 (279)
480 PLN02424 ketopantoate hydroxym 85.7 26 0.00056 36.0 14.4 148 154-326 48-223 (332)
481 TIGR03820 lys_2_3_AblA lysine- 85.6 53 0.0012 34.8 19.8 158 143-321 136-314 (417)
482 PRK06096 molybdenum transport 85.5 5.7 0.00012 39.9 9.6 124 246-398 112-255 (284)
483 PRK08318 dihydropyrimidine deh 85.5 26 0.00055 36.8 15.0 161 146-319 111-304 (420)
484 PRK06582 coproporphyrinogen II 85.5 30 0.00064 36.1 15.3 94 195-297 98-197 (390)
485 PF04131 NanE: Putative N-acet 85.4 11 0.00023 35.8 10.7 114 201-350 51-170 (192)
486 TIGR00423 radical SAM domain p 85.4 15 0.00033 36.8 12.8 77 273-351 35-122 (309)
487 COG0274 DeoC Deoxyribose-phosp 85.3 38 0.00083 33.0 20.1 179 143-350 19-209 (228)
488 PRK08091 ribulose-phosphate 3- 85.3 37 0.0008 33.0 14.8 141 151-318 81-226 (228)
489 TIGR00343 pyridoxal 5'-phospha 85.3 16 0.00035 36.6 12.5 63 151-221 79-141 (287)
490 TIGR01334 modD putative molybd 85.3 6.7 0.00015 39.2 9.9 125 243-398 108-254 (277)
491 cd03315 MLE_like Muconate lact 85.1 19 0.00041 35.1 13.0 115 114-259 117-235 (265)
492 cd06831 PLPDE_III_ODC_like_AZI 85.0 31 0.00067 36.0 15.2 57 150-219 48-107 (394)
493 cd06819 PLPDE_III_LS_D-TA Type 85.0 31 0.00068 35.0 15.0 30 300-330 139-169 (358)
494 PLN02951 Molybderin biosynthes 85.0 22 0.00048 36.8 14.0 125 235-384 90-229 (373)
495 TIGR00007 phosphoribosylformim 85.0 36 0.00077 32.3 16.2 178 148-350 28-215 (230)
496 cd06557 KPHMT-like Ketopantoat 84.8 30 0.00065 34.2 14.1 138 194-350 11-175 (254)
497 PLN02433 uroporphyrinogen deca 84.8 6.2 0.00013 40.3 9.8 72 277-352 179-259 (345)
498 cd03174 DRE_TIM_metallolyase D 84.8 12 0.00026 36.0 11.3 12 246-257 23-34 (265)
499 PRK04180 pyridoxal biosynthesi 84.6 16 0.00036 36.7 12.2 152 151-321 86-259 (293)
500 TIGR00078 nadC nicotinate-nucl 84.6 11 0.00023 37.4 11.0 107 272-398 120-241 (265)
No 1
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=100.00 E-value=4.9e-76 Score=592.80 Aligned_cols=313 Identities=86% Similarity=1.292 Sum_probs=298.8
Q ss_pred cCCCCCCchhhhHHHHhhcCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCH
Q 014369 103 YNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182 (426)
Q Consensus 103 ~~s~~~~~~~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~ 182 (426)
|.|-.|.-.++.+.++.+.+||++|+|+|+|||||+|.++..|++++|++|++.|+++||+.||+|+|++|+++|||.|.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~m~~~V~I~DtTlRDG~Q~~g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~ 102 (347)
T PLN02746 23 YSSSSNEVGVAHMHNKLLKGLPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADA 102 (347)
T ss_pred cccccccccccccccchhhcCCCceEEEECCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccH
Confidence 33444555667778887888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEE
Q 014369 183 RDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV 262 (426)
Q Consensus 183 ~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v 262 (426)
+++++.++..++.++.++++|.+|+++|+++|++.|++++++||.|+++|+|+|++|+++++.+++++||++|++|+++|
T Consensus 103 ~ev~~~i~~~~~~~~~~l~~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~i 182 (347)
T PLN02746 103 KDVMAAVRNLEGARFPVLTPNLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYV 182 (347)
T ss_pred HHHHHHHHhccCCceeEEcCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 99999998877888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHH
Q 014369 263 SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 342 (426)
Q Consensus 263 ~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaA 342 (426)
+++||||++++++++++.++++++.++|+++|+|+||+|+++|.+++++++.+++.+|..+|++|+|||+|||+||+++|
T Consensus 183 s~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA 262 (347)
T PLN02746 183 SCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVS 262 (347)
T ss_pred EeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987689999999999999999999
Q ss_pred HHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCCccc
Q 014369 343 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA 415 (426)
Q Consensus 343 l~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~piv 415 (426)
+++||++||+|++|||||||||||+||++||+|+++|+.+|++++||+++|.++++++++.+|++++++....
T Consensus 263 ~~aGa~~vd~sv~GlGecPfa~graGN~atE~lv~~L~~~G~~tgiDl~~L~~~s~~v~~~~g~~~~~~~~~~ 335 (347)
T PLN02746 263 LQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVSTNVDLGKLMAAGDFISKHLGRPSGSKTAVA 335 (347)
T ss_pred HHhCCCEEEEecccccCCCCCCCCCCChhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987544
No 2
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=100.00 E-value=8.5e-72 Score=551.54 Aligned_cols=287 Identities=64% Similarity=1.041 Sum_probs=279.6
Q ss_pred CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC
Q 014369 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP 202 (426)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~ 202 (426)
||++|+|+|+|||||+|+++..|++++|++|++.|+++||+.||+|+|++|+++|++.|.+++++.+.+.++.++.++++
T Consensus 1 m~~~v~I~D~TlRDG~Q~~~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~~ 80 (287)
T PRK05692 1 LPKRVKIVEVGPRDGLQNEKRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALTP 80 (287)
T ss_pred CCCceEEEECCCCccccCcCCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEec
Confidence 47789999999999999999999999999999999999999999999999999999999988888887777899999999
Q ss_pred ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369 203 NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 282 (426)
Q Consensus 203 ~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~ 282 (426)
|.+|+++|+++|++.|++++++||.|.+.|+|+|++++++++.+++++||++|+.|+++|+++|+||++++++++++.++
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~ 160 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADV 160 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCC
Q 014369 283 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPY 362 (426)
Q Consensus 283 ~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~ 362 (426)
++.+.++|+++|+|+||+|+++|.+++++++.+++++|+.+|++|+|||+|||+||+++|+++||++||+|++|||||||
T Consensus 161 ~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGecpf 240 (287)
T PRK05692 161 AERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGGCPY 240 (287)
T ss_pred HHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEccccCCCCC
Confidence 99999999999999999999999999999999999998778999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCC
Q 014369 363 AKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSG 409 (426)
Q Consensus 363 a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~ 409 (426)
||||+||++||+++++|+.+|+++++|+++|.++++++++.+|+++|
T Consensus 241 a~g~aGN~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~~~~~~~~~ 287 (287)
T PRK05692 241 APGASGNVATEDVLYMLHGLGIETGIDLDKLVRAGQFIQSKLGRPLP 287 (287)
T ss_pred CCCccccccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999886
No 3
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-69 Score=500.56 Aligned_cols=304 Identities=70% Similarity=1.062 Sum_probs=296.5
Q ss_pred hhhHHHHhhcCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh
Q 014369 112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD 191 (426)
Q Consensus 112 ~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~ 191 (426)
.|.+.++.++..|++++|+++.+|||.|.++..+|++.|++++++|.+.|+..||.++|++|||+|||+|..+++..+++
T Consensus 4 ~~~~s~~a~~t~~~~vkiVEVGpRDGLQnEk~~vpt~vKveLI~~Lse~Gl~~vEtTSFVSpKWVPQl~D~~ev~k~i~~ 83 (316)
T KOG2368|consen 4 NRLLSNRAYSTAPKRVKIVEVGPRDGLQNEKNIVPTEVKVELIDRLSECGLQVVETTSFVSPKWVPQLADHNEVMKGIRK 83 (316)
T ss_pred hHHHHhhhhhcccceeEEEEecCcccccccCccCCchHHHHHHHHHHHcCCceeeeecccCccccccccchHHHHHhhhc
Confidence 46778888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC
Q 014369 192 LEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE 271 (426)
Q Consensus 192 ~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~ 271 (426)
.+++++.+|+||+++++.|+++|+.+|.+|-.+||.|...|+||++||++.++.++++.|++++++|++|++++.|||+.
T Consensus 84 ~~Gv~yPVLtPNlkGf~~AvaaGa~EvavFgaASe~FslkNiNctiees~~rf~~v~kaA~~~ni~vRGYVScvvGCPye 163 (316)
T KOG2368|consen 84 FPGVSYPVLTPNLKGFEAAVAAGAEEVAVFGAASEAFSLKNINCTIEESLKRFMEVLKAAQEHNIRVRGYVSCVVGCPYE 163 (316)
T ss_pred CCCccccccCcchhhHHHHHhcCceeEEeeehhhhhhhhccCCccHHHHHHHHHHHHHHHHHcCCccceEEEEEecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD 351 (426)
+...|+.++++++.++++||.+|+|.||+|+.+|..+.++++.+.+.+|...|.+|||||||.|+||+|.+++.|++.||
T Consensus 164 G~v~P~kVa~V~k~ly~mGCyEiSLGDTIGvGTpgtm~~ML~~Vmk~vPa~~LAVH~HDTYGQALaNiL~slqmGi~vvD 243 (316)
T KOG2368|consen 164 GAVQPSKVAEVVKKLYEMGCYEISLGDTIGVGTPGTMKRMLDAVMKVVPAEKLAVHCHDTYGQALANILVSLQMGIRVVD 243 (316)
T ss_pred CCcCHHHHHHHHHHHHhCCcEEEecccccccCCchhHHHHHHHHHHhCCHHHhhhhhhhhHHHHHHHHHHHHHhcceehh
Confidence 99999999999999999999999999999999999999999999999997789999999999999999999999999999
Q ss_pred ecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCCccc
Q 014369 352 CSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA 415 (426)
Q Consensus 352 ~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~piv 415 (426)
.||.|||+||||+|.+||++||+++++|+.+|++|++||++|+++++++.+.+|++..++.+.+
T Consensus 244 SsvaGLGGCPYAkGAsGN~ATEDlvYmL~GlG~~TgVnL~Klieag~fi~~algr~~~Skva~A 307 (316)
T KOG2368|consen 244 SSVAGLGGCPYAKGASGNLATEDLVYMLNGLGLHTGVNLDKLIEAGDFICKALGRTTWSKVAQA 307 (316)
T ss_pred hhccccCCCCccccCCCCchHHHHHHHHhcCCcccCcCHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988875443
No 4
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=100.00 E-value=9.3e-68 Score=519.75 Aligned_cols=274 Identities=59% Similarity=0.957 Sum_probs=266.1
Q ss_pred EEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHH
Q 014369 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFE 208 (426)
Q Consensus 129 I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~ 208 (426)
|+|+|||||+|.++..|++++|++|++.|+++||+.||+|+|++|+++|++.|.+++++.+...+++++.+|+++.+|++
T Consensus 1 i~D~TlRDG~Q~~~~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~~~~~~~~~~~~~~dv~ 80 (274)
T cd07938 1 IVEVGPRDGLQNEKTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRRPGVRYSALVPNLRGAE 80 (274)
T ss_pred CeeCCCCCCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccCCCCEEEEECCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999988887777667899999999999999
Q ss_pred HHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh
Q 014369 209 AAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD 288 (426)
Q Consensus 209 ~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~ 288 (426)
+|+++|++.|++++++||.|++.|+|++++++++++.+.+++||++|+.++++++++|+||++++++++++.++++.+.+
T Consensus 81 ~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~ 160 (274)
T cd07938 81 RALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLD 160 (274)
T ss_pred HHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC
Q 014369 289 MGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASG 368 (426)
Q Consensus 289 ~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG 368 (426)
+|+++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++||++||+|++|||+||||++|+|
T Consensus 161 ~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~t~~GlGgcpfa~eraG 240 (274)
T cd07938 161 LGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGCPFAPGATG 240 (274)
T ss_pred cCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccCCCCCCCCccC
Confidence 99999999999999999999999999999999789999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHH
Q 014369 369 NVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK 402 (426)
Q Consensus 369 Na~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~ 402 (426)
|++||+++++|+.+|++++||+++|.++++++++
T Consensus 241 N~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~~ 274 (274)
T cd07938 241 NVATEDLVYMLEGMGIETGIDLDKLLAAARWISE 274 (274)
T ss_pred CcCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998863
No 5
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=100.00 E-value=8.8e-66 Score=526.53 Aligned_cols=284 Identities=25% Similarity=0.331 Sum_probs=264.0
Q ss_pred CCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeC
Q 014369 124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTP 202 (426)
Q Consensus 124 p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~ 202 (426)
|++|+|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|...+ +..++++.+. ...+.++.++++
T Consensus 2 ~~~v~I~DtTLRDG~Q~~~~~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~------~~~e~i~~i~~~~~~~~i~~~~r 75 (378)
T PRK11858 2 PKDIEIVDTTLRDGEQTPGVVFTNEEKLAIARMLDEIGVDQIEAGFPAVSE------DEKEAIKAIAKLGLNASILALNR 75 (378)
T ss_pred CCeeEEEeCCCCccCcCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCcCh------HHHHHHHHHHhcCCCeEEEEEcc
Confidence 567999999999999999999999999999999999999999999875431 1224555554 344577888887
Q ss_pred C-hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369 203 N-LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 281 (426)
Q Consensus 203 ~-~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~ 281 (426)
+ .+|++.|+++|++.|++++++||.|+++++|+|++++++++.+++++|+++|+.|. |++||+++++++++.+
T Consensus 76 ~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~------~~~ed~~r~~~~~l~~ 149 (378)
T PRK11858 76 AVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVS------FSAEDASRTDLDFLIE 149 (378)
T ss_pred cCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE------EEeccCCCCCHHHHHH
Confidence 5 78999999999999999999999999999999999999999999999999999887 4567899999999999
Q ss_pred HHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCC
Q 014369 282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCP 361 (426)
Q Consensus 282 ~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP 361 (426)
+++.+.++|+++|+|+||+|.++|.+++++++.+++.++ .+|++|+|||+|||+||+++|+++||++||+|++||||
T Consensus 150 ~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlGe-- 226 (378)
T PRK11858 150 FAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAVD-IPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLGE-- 226 (378)
T ss_pred HHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeeccccc--
Confidence 999999999999999999999999999999999999984 58999999999999999999999999999999999999
Q ss_pred CCCCCCCcccHHHHHHHHHh-CCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369 362 YAKGASGNVATEDVVYMLSG-LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI 426 (426)
Q Consensus 362 ~a~graGNa~lEevv~~L~~-lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi 426 (426)
|+||++||+|+++|+. +|+++++|+++|.++++++++.+|+++|+++||+|+++|+|+|||
T Consensus 227 ----raGNa~lE~vv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~pivG~~~F~h~sGi 288 (378)
T PRK11858 227 ----RAGNAALEEVVMALKYLYGIDLGIDTERLYELSRLVSKASGIPVPPNKAIVGENAFAHESGI 288 (378)
T ss_pred ----cccCccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHhCcCCCCCCccccchhhhhhccc
Confidence 9999999999999994 899999999999999999999999999999999999999999998
No 6
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=100.00 E-value=2.4e-65 Score=521.14 Aligned_cols=282 Identities=24% Similarity=0.281 Sum_probs=263.8
Q ss_pred ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeC-C
Q 014369 126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTP-N 203 (426)
Q Consensus 126 ~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~-~ 203 (426)
.|+|+|||||||+|+++..|++++|++|++.|+++||+.||+|+|...+ +.++.++.+. ..++.++.++++ +
T Consensus 1 ~v~i~D~TLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~------~~~e~i~~i~~~~~~~~i~~~~r~~ 74 (365)
T TIGR02660 1 PVIINDTTLRDGEQAPGVAFTAAEKLAIARALDEAGVDELEVGIPAMGE------EERAVIRAIVALGLPARLMAWCRAR 74 (365)
T ss_pred CcEEEeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCH------HHHHHHHHHHHcCCCcEEEEEcCCC
Confidence 3789999999999999999999999999999999999999999875431 1235555554 457789999996 6
Q ss_pred hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369 204 LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 283 (426)
Q Consensus 204 ~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~ 283 (426)
.+|++.++++|++.|++++++||.|++.++|+|++++++++.+++++||++|+.|. |+++++++++++++.+++
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~------~~~ed~~r~~~~~l~~~~ 148 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS------VGGEDASRADPDFLVELA 148 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE------EeecCCCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999876 667899999999999999
Q ss_pred HHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCC
Q 014369 284 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYA 363 (426)
Q Consensus 284 ~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a 363 (426)
+++.++|+++|+|+||+|.++|.+++++|+.+++.++ ++|++|+|||+|||+||+++|+++||++||+|++||||
T Consensus 149 ~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGe---- 223 (365)
T TIGR02660 149 EVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVD-LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGE---- 223 (365)
T ss_pred HHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeecccc----
Confidence 9999999999999999999999999999999999987 58999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHH-HhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369 364 KGASGNVATEDVVYML-SGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI 426 (426)
Q Consensus 364 ~graGNa~lEevv~~L-~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi 426 (426)
|+||++||+|+++| ..+|+++++|+++|.++++++++.+|+++|+++|++|+++|+|+|||
T Consensus 224 --raGN~~lE~lv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~p~vG~~~f~h~sGi 285 (365)
T TIGR02660 224 --RAGNAALEEVAMALKRLLGRDTGIDTSRLPALSQLVARASGRPIPPQKPVVGESVFTHESGI 285 (365)
T ss_pred --ccccCCHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhccch
Confidence 99999999999999 56899999999999999999999999999999999999999999997
No 7
>PRK00915 2-isopropylmalate synthase; Validated
Probab=100.00 E-value=5.2e-65 Score=538.63 Aligned_cols=287 Identities=24% Similarity=0.320 Sum_probs=268.0
Q ss_pred CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC
Q 014369 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP 202 (426)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~ 202 (426)
||++|+|+|||||||+|.+++.|+.++|++|++.|+++||+.||+|||.+.+ .|.+.+.+..+..+++++.+|++
T Consensus 1 m~~~v~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~-----~d~~~v~~i~~~~~~~~i~a~~r 75 (513)
T PRK00915 1 MMDRVIIFDTTLRDGEQSPGASLTVEEKLQIAKQLERLGVDVIEAGFPASSP-----GDFEAVKRIARTVKNSTVCGLAR 75 (513)
T ss_pred CCCCcEEEECCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCh-----HHHHHHHHHHhhCCCCEEEEEcc
Confidence 4778999999999999999999999999999999999999999999986432 24555544445667899999997
Q ss_pred -ChhhHHHHH----HcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHH
Q 014369 203 -NLKGFEAAI----AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS 277 (426)
Q Consensus 203 -~~~di~~a~----~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~ 277 (426)
+.+|+++++ ++|++.|++|+++||.|++.++|+|++++++++.+.+++||++|++|. |++||++|++++
T Consensus 76 ~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~------f~~ed~~r~d~~ 149 (513)
T PRK00915 76 AVKKDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE------FSAEDATRTDLD 149 (513)
T ss_pred CCHHHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE------EEeCCCCCCCHH
Confidence 478999998 678999999999999999999999999999999999999999999886 778899999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCC---ceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 014369 278 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTYGQSLPNILISLQMGISTVDCSV 354 (426)
Q Consensus 278 ~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~---~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv 354 (426)
++.++++.+.++|+++|+|+||+|+++|.+++++|+.+++.+|. .+|++|+|||+|||+||+++|+++||++||+|+
T Consensus 150 ~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~Tv 229 (513)
T PRK00915 150 FLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECTI 229 (513)
T ss_pred HHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEEe
Confidence 99999999999999999999999999999999999999999885 689999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCcccHHHHHHHHHhC----CCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369 355 AGLGGCPYAKGASGNVATEDVVYMLSGL----GVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI 426 (426)
Q Consensus 355 ~GlGecP~a~graGNa~lEevv~~L~~l----G~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi 426 (426)
+|||| |+||++||+|+++|+.. |+++++|+++|.++++++++++|+++|+++|++|+++|+|+|||
T Consensus 230 ~GlGE------RaGNa~lE~vv~~L~~~~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~PivG~~aF~h~sGi 299 (513)
T PRK00915 230 NGIGE------RAGNAALEEVVMALKTRKDIYGVETGINTEEIYRTSRLVSQLTGMPVQPNKAIVGANAFAHESGI 299 (513)
T ss_pred ecccc------cccCccHHHHHHHHHhhhcccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccChhHHHhccch
Confidence 99999 99999999999999764 99999999999999999999999999999999999999999997
No 8
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=100.00 E-value=1.1e-64 Score=515.97 Aligned_cols=281 Identities=24% Similarity=0.300 Sum_probs=262.3
Q ss_pred cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeC-Ch
Q 014369 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTP-NL 204 (426)
Q Consensus 127 V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~-~~ 204 (426)
|.|+|||||||+|+++..|++++|++|++.|+++||+.||+|+|++++ +..+.++.+. ..+.+++.++++ +.
T Consensus 1 i~i~DtTLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~------~~~e~i~~i~~~~~~~~v~~~~r~~~ 74 (363)
T TIGR02090 1 VYIFDTTLRDGEQTPGVSLTVEQKVEIARKLDELGVDVIEAGFPIASE------GEFEAIKKISQEGLNAEICSLARALK 74 (363)
T ss_pred CEEEeCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCh------HHHHHHHHHHhcCCCcEEEEEcccCH
Confidence 679999999999999999999999999999999999999999998753 2233344443 445788999987 68
Q ss_pred hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369 205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (426)
Q Consensus 205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~ 284 (426)
+|+++|+++|++.|++++++||.|++.++|++++++++++.+++++||++|++|++++ +++++++++++.++++
T Consensus 75 ~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~------eda~r~~~~~l~~~~~ 148 (363)
T TIGR02090 75 KDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSA------EDATRTDIDFLIKVFK 148 (363)
T ss_pred HHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEE------eecCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987443 4678999999999999
Q ss_pred HHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCC
Q 014369 285 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAK 364 (426)
Q Consensus 285 ~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~ 364 (426)
++.++|+++|+|+||+|.++|.+++++++.+++.++ .+|++|+|||+|||+||+++|+++||++||+|++||||
T Consensus 149 ~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlGe----- 222 (363)
T TIGR02090 149 RAEEAGADRINIADTVGVLTPQKMEELIKKLKENVK-LPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIGE----- 222 (363)
T ss_pred HHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccC-ceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeecccc-----
Confidence 999999999999999999999999999999999988 58999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHh-CCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369 365 GASGNVATEDVVYMLSG-LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI 426 (426)
Q Consensus 365 graGNa~lEevv~~L~~-lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi 426 (426)
|+||++||+|+++|+. +|+++++|+++|.++++++++.+|+++|+++||+|+++|+|+|||
T Consensus 223 -raGN~~lE~vv~~L~~~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~pivG~~~f~h~sGi 284 (363)
T TIGR02090 223 -RAGNAALEEVVMALKYLYGVKTKIKTEKLYETSRLVSELSGVKVPPNKAIVGENAFAHESGI 284 (363)
T ss_pred -ccccccHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHhcch
Confidence 9999999999999998 899999999999999999999999999999999999999999997
No 9
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=100.00 E-value=2.3e-64 Score=529.05 Aligned_cols=286 Identities=22% Similarity=0.306 Sum_probs=260.9
Q ss_pred CCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcC---------C
Q 014369 124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE---------G 194 (426)
Q Consensus 124 p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~---------~ 194 (426)
+++|+|+|||||||+|.+++.|+.++|++|++.|+++||+.||+|||...+ + +.+.+.+..+..+ .
T Consensus 82 ~~~V~I~DtTLRDGeQ~~gv~fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s~---~--e~e~i~~i~~~~~~~~~~~~~l~ 156 (503)
T PLN03228 82 KNYVRVLDTTLRDGEQSPGGSLTPPQKLEIARQLAKLRVDIMEVGFPGSSE---E--EFEAVKTIAKTVGNEVDEETGYV 156 (503)
T ss_pred CCCeEEEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCH---H--HHHHHHHHHHhcccccccccccc
Confidence 678999999999999999999999999999999999999999999986532 2 2333333333222 1
Q ss_pred CcEEEEeCC-hhhHHHHHHc----CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecC
Q 014369 195 ARLPVLTPN-LKGFEAAIAA----GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGC 268 (426)
Q Consensus 195 ~~l~~l~~~-~~di~~a~~~----Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~ 268 (426)
..+.+|+|+ .+|+++++++ |+++|++++++||.|+++++|+|++++++++.+++++||++|+. |. |++
T Consensus 157 ~~i~a~~R~~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~------f~~ 230 (503)
T PLN03228 157 PVICGIARCKKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQ------FGC 230 (503)
T ss_pred eEEeeecccCHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEE------ecc
Confidence 467788886 5799999988 77899999999999999999999999999999999999999986 44 889
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC---CceEEEEeCCCcCcHHHHHHHHHHc
Q 014369 269 PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP---VEKLAVHLHDTYGQSLPNILISLQM 345 (426)
Q Consensus 269 pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p---~~~i~~H~HNd~GlA~ANaLaAl~a 345 (426)
||++|+|++++.++++.+.++|+++|+|+||+|.++|.+++++|+.+++.+| .++|++|+|||+|||+||+++|+++
T Consensus 231 EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~a 310 (503)
T PLN03228 231 EDGGRSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICA 310 (503)
T ss_pred ccccccCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999886 4679999999999999999999999
Q ss_pred CCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh------CCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhh
Q 014369 346 GISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG------LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRI 419 (426)
Q Consensus 346 Ga~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~------lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~v 419 (426)
||++||+|++|||| |+||++||+|+++|+. +|+++++|+++|.++++++++++|+++|+++||+|+|+
T Consensus 311 Ga~~Vd~Tv~GiGE------RaGNa~lEevv~~L~~~~~~~~~g~~t~iDl~~L~~ls~~V~~~~g~~i~~~kPivG~na 384 (503)
T PLN03228 311 GARQVEVTINGIGE------RSGNASLEEVVMALKCRGAYLMNGVYTGIDTRQIMATSKMVQEYTGMYVQPHKPIVGANC 384 (503)
T ss_pred CCCEEEEecccccc------ccCCccHHHHHHHHHhcccccccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHHH
Confidence 99999999999999 9999999999999987 48899999999999999999999999999999999999
Q ss_pred hhhccCC
Q 014369 420 AADASKI 426 (426)
Q Consensus 420 f~h~Sgi 426 (426)
|+|||||
T Consensus 385 F~heSGI 391 (503)
T PLN03228 385 FVHESGI 391 (503)
T ss_pred HHhccch
Confidence 9999997
No 10
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=100.00 E-value=2.7e-64 Score=530.62 Aligned_cols=284 Identities=25% Similarity=0.355 Sum_probs=266.2
Q ss_pred ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC-Ch
Q 014369 126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP-NL 204 (426)
Q Consensus 126 ~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-~~ 204 (426)
+|+|+|||||||+|.+++.|+.++|++|++.|+++||++||+|||++++ .|.+.+.+..+..++.++++|++ +.
T Consensus 1 ~v~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~-----~d~e~v~~i~~~~~~~~i~al~r~~~ 75 (494)
T TIGR00973 1 RIIIFDTTLRDGEQSPGASLTVEEKLQIALALERLGVDIIEAGFPVSSP-----GDFEAVQRIARTVKNPRVCGLARCVE 75 (494)
T ss_pred CeEEEECCCCccCcCCCCCcCHHHHHHHHHHHHHcCCCEEEEECCCCCH-----HHHHHHHHHHHhCCCCEEEEEcCCCH
Confidence 4789999999999999999999999999999999999999999998754 45555544445667889999998 57
Q ss_pred hhHHHHHHc----CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369 205 KGFEAAIAA----GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA 280 (426)
Q Consensus 205 ~di~~a~~~----Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~ 280 (426)
+|+++++++ +.+.|++++++|+.|++.++++|++++++.+.+++++||++|..|. |++||++|++++++.
T Consensus 76 ~did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~------f~~Ed~~r~d~~~l~ 149 (494)
T TIGR00973 76 KDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVE------FSCEDAGRTEIPFLA 149 (494)
T ss_pred HhHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE------EEcCCCCCCCHHHHH
Confidence 899999887 6789999999999999999999999999999999999999999776 788999999999999
Q ss_pred HHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCC---ceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 014369 281 YVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL 357 (426)
Q Consensus 281 ~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~---~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~Gl 357 (426)
++++++.++|+++|+|+||+|.++|.+++++|+.+++++|. .+|++|+|||+|||+||+++|+++||++||+|++||
T Consensus 150 ~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~Gl 229 (494)
T TIGR00973 150 RIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTINGI 229 (494)
T ss_pred HHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEeecc
Confidence 99999999999999999999999999999999999999873 579999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccHHHHHHHHHh----CCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369 358 GGCPYAKGASGNVATEDVVYMLSG----LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI 426 (426)
Q Consensus 358 GecP~a~graGNa~lEevv~~L~~----lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi 426 (426)
|| |+||++||+|+++|+. +|+++++|+++|.++++++++++|+++|+++||+|+++|+|+|||
T Consensus 230 GE------RaGNa~le~vv~~L~~~~~~~g~~~~idl~~L~~~s~~v~~~~g~~v~~~~PivG~~aF~h~sGi 296 (494)
T TIGR00973 230 GE------RAGNAALEEVVMALKVRKDFLGVETGINTKEIYRTSRLVSQLTGMPVQPNKAIVGDNAFAHESGI 296 (494)
T ss_pred cc------cccCccHHHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhccch
Confidence 99 9999999999999974 499999999999999999999999999999999999999999997
No 11
>PRK09389 (R)-citramalate synthase; Provisional
Probab=100.00 E-value=6e-64 Score=527.07 Aligned_cols=283 Identities=22% Similarity=0.304 Sum_probs=263.2
Q ss_pred ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCC-h
Q 014369 126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPN-L 204 (426)
Q Consensus 126 ~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~-~ 204 (426)
+|+|+|||||||+|+++..|+.++|++|++.|+++||+.||+|||++++ .|.+.+.+..+...+.++.+|++. .
T Consensus 2 ~i~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~-----~d~e~v~~i~~~~~~~~i~a~~r~~~ 76 (488)
T PRK09389 2 MVRILDTTLRDGEQTPGVSLTPEEKLEIARKLDELGVDVIEAGSAITSE-----GEREAIKAVTDEGLNAEICSFARAVK 76 (488)
T ss_pred ceEEEeCCCCCcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCcCCH-----HHHHHHHHHHhcCCCcEEEeecccCH
Confidence 3899999999999999999999999999999999999999999998653 344433333334456889999975 6
Q ss_pred hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369 205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (426)
Q Consensus 205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~ 284 (426)
+|+++++++|++.|++++++||.|++.++++|++++++.+.+++++||++|+.|++ +.+|++|++++++.++++
T Consensus 77 ~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~------~~ed~~r~~~~~l~~~~~ 150 (488)
T PRK09389 77 VDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVEL------SGEDASRADLDFLKELYK 150 (488)
T ss_pred HHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEE------EEeeCCCCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999998884 345788999999999999
Q ss_pred HHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCC
Q 014369 285 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAK 364 (426)
Q Consensus 285 ~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~ 364 (426)
++.++|+++|+|+||+|+++|.+++++++.+++.++ .+|++|+|||+|||+||+++|+++||++||+|++||||
T Consensus 151 ~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~~-v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti~GiGE----- 224 (488)
T PRK09389 151 AGIEAGADRICFCDTVGILTPEKTYELFKRLSELVK-GPVSIHCHNDFGLAVANTLAALAAGADQVHVTINGIGE----- 224 (488)
T ss_pred HHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhhcC-CeEEEEecCCccHHHHHHHHHHHcCCCEEEEEcccccc-----
Confidence 999999999999999999999999999999999887 47999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHh-CCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369 365 GASGNVATEDVVYMLSG-LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI 426 (426)
Q Consensus 365 graGNa~lEevv~~L~~-lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi 426 (426)
|+||++||+|+++|+. +|+++++|+++|.++++++++++|+++|+++||+|+++|+|+|||
T Consensus 225 -RaGNa~lE~lv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~v~~~~pivG~~aF~h~sGi 286 (488)
T PRK09389 225 -RAGNASLEEVVMALKHLYDVETGIKLEELYELSRLVSRLTGIPVPPNKAIVGENAFAHESGI 286 (488)
T ss_pred -cccCccHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhcchh
Confidence 9999999999999998 599999999999999999999999999999999999999999997
No 12
>PLN02321 2-isopropylmalate synthase
Probab=100.00 E-value=7.3e-64 Score=536.07 Aligned_cols=285 Identities=22% Similarity=0.326 Sum_probs=260.8
Q ss_pred CCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCC-CCCccccccCHHHHHHHhHhcCC--------
Q 014369 124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDLEG-------- 194 (426)
Q Consensus 124 p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~~~v~~~i~~~~~-------- 194 (426)
|++|+|+|||||||+|.++..|++++|++|++.|+++||+.||+|||. +|+ |.+.+.++.+.+++
T Consensus 84 ~~~V~I~DtTLRDGeQ~~g~~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~------D~e~vr~i~~~~~~~v~~~~~v 157 (632)
T PLN02321 84 PNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPIASPD------DLEAVKTIAKEVGNEVDEDGYV 157 (632)
T ss_pred CCceEEEECCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCcCCCcc------HHHHHHHHHHhcccCCCccccc
Confidence 788999999999999999999999999999999999999999999974 543 55554444343333
Q ss_pred CcEEEEeC-ChhhHHHHHHc--CC--CEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecC
Q 014369 195 ARLPVLTP-NLKGFEAAIAA--GA--KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGC 268 (426)
Q Consensus 195 ~~l~~l~~-~~~di~~a~~~--Gv--~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~ 268 (426)
..+.+|++ +.+|+++++++ ++ .+|++|+++||.|+++++|+|++++++++.+++++||++|.. |. |++
T Consensus 158 ~~i~a~~ra~~~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~------fs~ 231 (632)
T PLN02321 158 PVICGLSRCNKKDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVE------FSP 231 (632)
T ss_pred eeeeeehhccHHhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEE------Eec
Confidence 45667776 57999999998 33 379999999999999999999999999999999999999984 44 789
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCC---ceEEEEeCCCcCcHHHHHHHHHHc
Q 014369 269 PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTYGQSLPNILISLQM 345 (426)
Q Consensus 269 pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~---~~i~~H~HNd~GlA~ANaLaAl~a 345 (426)
||++|++++++.++++++.++|+++|+|+||+|+++|.++.++|+.+++++|. ++|++|||||+|||+||+++|+++
T Consensus 232 EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~A 311 (632)
T PLN02321 232 EDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHA 311 (632)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999873 469999999999999999999999
Q ss_pred CCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh------CCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhh
Q 014369 346 GISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG------LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRI 419 (426)
Q Consensus 346 Ga~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~------lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~v 419 (426)
||++||+|++|||| |+||++||+|+++|+. +|++++||+++|.++++++++++|+++++++||||+|+
T Consensus 312 GA~~Vd~TinGlGE------RaGNa~LEevv~~L~~~~~~~~~g~~tgidl~~L~~~s~~V~~~~g~~v~~~kPiVG~na 385 (632)
T PLN02321 312 GARQVEVTINGIGE------RAGNASLEEVVMAIKCRGDEQLGGLYTGINPVHITPTSKMVSEYTGMQVQPHKAIVGANA 385 (632)
T ss_pred CCCEEEEecccccc------cccCccHHHHHHHHHhccCccccCcccccCHHHHHHHHHHHHHHhCcCCCCCcccccccc
Confidence 99999999999999 9999999999999985 57899999999999999999999999999999999999
Q ss_pred hhhccCC
Q 014369 420 AADASKI 426 (426)
Q Consensus 420 f~h~Sgi 426 (426)
|+|+|||
T Consensus 386 FaheSGI 392 (632)
T PLN02321 386 FAHESGI 392 (632)
T ss_pred eehhcCc
Confidence 9999998
No 13
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-64 Score=516.58 Aligned_cols=285 Identities=28% Similarity=0.358 Sum_probs=259.4
Q ss_pred CccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc---CCCcEEEEe
Q 014369 125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLT 201 (426)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~ 201 (426)
++|+|+|+|||||+|+++..|+.++|++|+++|+++|+++||+|+|+++++.+++ +....... ..+++.++.
T Consensus 1 ~~v~i~DtTLRDG~Q~~g~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~-----~~~i~~~~~~~~~~~~~~~~ 75 (409)
T COG0119 1 KKVIIFDTTLRDGEQAPGVSFSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEF-----VRAIAEKAGLFICALIAALA 75 (409)
T ss_pred CCcEEEeCCCCcCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHH-----HHHHHHhcCcccchhhhhhH
Confidence 3689999999999999999999999999999999999999999999987654332 22222121 244556666
Q ss_pred CCh-hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369 202 PNL-KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA 280 (426)
Q Consensus 202 ~~~-~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~ 280 (426)
++. .++++++++|+++|++|.++|+.|++.++++|+++.++.+.+.++|||++|+++++ ++++.+|++++++.
T Consensus 76 ~~~~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~------~~Ed~~rt~~~~l~ 149 (409)
T COG0119 76 RAIKRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRF------SAEDATRTDPEFLA 149 (409)
T ss_pred HhHHhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE------EeeccccCCHHHHH
Confidence 665 59999999999999999999999999999999999999999999999999988873 45677899999999
Q ss_pred HHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369 281 YVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG 359 (426)
Q Consensus 281 ~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe 359 (426)
++++++.++|+++|+|+||+|+++|.+++++++.+++.+| ..+|++|||||+|||+||+++|+++||++||+|++|+||
T Consensus 150 ~~~~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANslaAv~aGa~~v~~TvnGiGE 229 (409)
T COG0119 150 EVVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQVEGTVNGIGE 229 (409)
T ss_pred HHHHHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHHHHHHcCCcEEEEeccccee
Confidence 9999999999999999999999999999999999999998 468999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccHHHHHHHHHh---CCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369 360 CPYAKGASGNVATEDVVYMLSG---LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI 426 (426)
Q Consensus 360 cP~a~graGNa~lEevv~~L~~---lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi 426 (426)
|+||+++|+++++|.. +|+++++|+.+|.++++++++.+|.++|+++||+|+|+|+|+|||
T Consensus 230 ------RaGna~l~~v~~~l~~~~~~~~~~~idl~~l~~~s~~v~~~~~~~v~~n~pivG~naFah~sGI 293 (409)
T COG0119 230 ------RAGNAALEEVVLALALRKDYGVDTGIDLEKLTEASRLVERLTGIPVPPNKPIVGENAFAHESGI 293 (409)
T ss_pred ------ccccccHHHHHHHHHHHhhcCCccCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHhhcch
Confidence 9999999999976653 678999999999999999999999999999999999999999997
No 14
>PRK03739 2-isopropylmalate synthase; Validated
Probab=100.00 E-value=1e-62 Score=523.79 Aligned_cols=291 Identities=18% Similarity=0.145 Sum_probs=262.2
Q ss_pred CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHH-HHHHHh-Hh-c--CCCcE
Q 014369 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR-DVMEAV-RD-L--EGARL 197 (426)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~-~v~~~i-~~-~--~~~~l 197 (426)
+.+++.|+|+|||||+|+++..|++++|++|+++|+++||+.||+|||... +.+ ++++.+ +. + ++..+
T Consensus 27 ~~~~~~i~dttLRDGeQ~~gv~~s~~~Ki~ia~~L~~~GV~~IE~GfP~~s-------~~e~e~v~~i~~~~~~~~~~~i 99 (552)
T PRK03739 27 ITKAPIWCSVDLRDGNQALIEPMSPERKLRMFDLLVKIGFKEIEVGFPSAS-------QTDFDFVRELIEEGLIPDDVTI 99 (552)
T ss_pred cCCCCeEeeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcC-------hHHHHHHHHHHHhcCCCCCCEE
Confidence 678899999999999999999999999999999999999999999986543 333 455555 43 2 46899
Q ss_pred EEEeCChh-hHHHHHHc--CC--CEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEE-EEEEeeecCCCC
Q 014369 198 PVLTPNLK-GFEAAIAA--GA--KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR-GYVSCVVGCPVE 271 (426)
Q Consensus 198 ~~l~~~~~-di~~a~~~--Gv--~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~-~~v~~~fg~pd~ 271 (426)
.+|+|+.+ |+++|+++ ++ +.|++|+++||.|+++++++|++++++++.+++++||++|.... ..+.+.|+.+|+
T Consensus 100 ~~l~r~~~~di~~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDa 179 (552)
T PRK03739 100 QVLTQAREHLIERTFEALEGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESF 179 (552)
T ss_pred EEEeccchhHHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccC
Confidence 99999864 69999886 44 47999999999999999999999999999999999999985321 123445889999
Q ss_pred CCCCHHHHHHHHHHHHh---CCCC---EEEEcCCCCCCCHHHHHHHHHHHHHhcC---CceEEEEeCCCcCcHHHHHHHH
Q 014369 272 GAIPPSKVAYVAKELHD---MGCF---EISLGDTIGVGTPGTVVPMLEAVMAVVP---VEKLAVHLHDTYGQSLPNILIS 342 (426)
Q Consensus 272 ~r~~~~~l~~~~~~l~~---~Gad---~I~l~DT~G~~~P~~v~~li~~l~~~~p---~~~i~~H~HNd~GlA~ANaLaA 342 (426)
+|++++++.++++++.+ +|++ +|+|+||+|+++|.++.++++.+++.+| ..+|++|||||+|||+||+++|
T Consensus 180 sR~d~~~l~~~~~~a~~~~~ag~~~~~~i~l~DTvG~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvANslaA 259 (552)
T PRK03739 180 TGTELDFALEVCDAVIDVWQPTPERKVILNLPATVEMSTPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAAAELA 259 (552)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCceeEEEeccCCcCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHHHHHH
Confidence 99999999999999876 5655 5999999999999999999999999987 5689999999999999999999
Q ss_pred HHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhh
Q 014369 343 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAAD 422 (426)
Q Consensus 343 l~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h 422 (426)
+++||++||+|++|+|| |+||++||+|+++|+.+|+++++|+++|.++++++++++|+++|+++||||+|+|+|
T Consensus 260 v~aGa~~v~gtvnG~GE------RaGNa~le~vv~~L~~~g~~t~idl~~L~~~s~~v~~~~~~~i~~~~PivG~~aF~h 333 (552)
T PRK03739 260 LMAGADRVEGCLFGNGE------RTGNVDLVTLALNLYTQGVDPGLDFSDIDEIRRTVEYCNQLPVHPRHPYAGDLVFTA 333 (552)
T ss_pred HHhCCCEEEeeCCcCcc------cccChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccchhhhhh
Confidence 99999999999999999 999999999999998899999999999999999999999999999999999999999
Q ss_pred ccCC
Q 014369 423 ASKI 426 (426)
Q Consensus 423 ~Sgi 426 (426)
+|||
T Consensus 334 esGi 337 (552)
T PRK03739 334 FSGS 337 (552)
T ss_pred ccch
Confidence 9997
No 15
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=100.00 E-value=1.2e-62 Score=520.61 Aligned_cols=287 Identities=18% Similarity=0.199 Sum_probs=260.1
Q ss_pred ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeCC-
Q 014369 126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPN- 203 (426)
Q Consensus 126 ~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~~- 203 (426)
+|+|+|||||||+|.++..|+.++|++|++.|+++||+.||+|||.+.+ .|.+.+.+..+ .+.+.++++|++.
T Consensus 1 ~V~I~DtTLRDG~Q~~g~~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~-----~d~~~v~~i~~~~~~~~~i~~~~r~~ 75 (526)
T TIGR00977 1 SLWLYDTTLRDGAQREGVSFSLEDKIRIAERLDDLGIHYIEGGWPGANP-----KDVQFFWQLKEMNFKNAKIVAFCSTR 75 (526)
T ss_pred CeEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCh-----HHHHHHHHHHHhCCCCcEEEEEeeec
Confidence 4889999999999999999999999999999999999999999876432 24444444443 2346889999853
Q ss_pred --------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCC
Q 014369 204 --------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP 275 (426)
Q Consensus 204 --------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~ 275 (426)
..++++++++|.+.|++|+++|+.|++.+++++++++++.+.+++++||++|+.|.+..+..| |++|++
T Consensus 76 r~~~~~~~d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~---D~~r~~ 152 (526)
T TIGR00977 76 RPHKKVEEDKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFF---DGYKAN 152 (526)
T ss_pred CCCCCCchHHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeee---ecccCC
Confidence 235789999999999999999999999999999999999999999999999999884444322 677999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 014369 276 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA 355 (426)
Q Consensus 276 ~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~ 355 (426)
++++.++++++.++|+++|+|+||+|+++|.+++++++.+++++|..+|++|||||+|||+||+++|+++||++||+|++
T Consensus 153 ~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~Vd~Tin 232 (526)
T TIGR00977 153 PEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMVQGTIN 232 (526)
T ss_pred HHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEEEEecc
Confidence 99999999999999999999999999999999999999999999876699999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccHHHHHHHHHh-CCCC--CCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369 356 GLGGCPYAKGASGNVATEDVVYMLSG-LGVE--TNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI 426 (426)
Q Consensus 356 GlGecP~a~graGNa~lEevv~~L~~-lG~~--~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi 426 (426)
|||| |+||++||+++++|+. +|++ +++|+++|.++++++++++|+++|+++|+||+++|+|+|||
T Consensus 233 GiGE------RaGNa~Le~v~~~L~~~~g~~~~t~idl~~L~~~s~~v~~~~~~~v~~~~pivG~~aF~h~sGi 300 (526)
T TIGR00977 233 GYGE------RCGNANLCSLIPNLQLKLGYDVIPPENLKKLTSTARLVAEIVNLPPDDNMPYVGRSAFAHKGGV 300 (526)
T ss_pred cccC------ccCCCcHHHHHHHHHhhcCCCCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccCcceeeeeccc
Confidence 9999 9999999999999985 7777 79999999999999999999999999999999999999997
No 16
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=100.00 E-value=1.3e-62 Score=524.24 Aligned_cols=293 Identities=18% Similarity=0.174 Sum_probs=268.9
Q ss_pred CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh--c-CCCcEEE
Q 014369 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD--L-EGARLPV 199 (426)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~--~-~~~~l~~ 199 (426)
+.+.+.|+|||||||+|.++..|++++|++|++.|+++||++||+|||++. + .|.+++.+.++. + +++++.+
T Consensus 23 ~~~~~~~~DtTLRDG~Q~~g~~~s~e~Ki~ia~~L~~~Gvd~IE~Gfp~~s----~-~D~e~v~~i~~~~l~~~~~~i~a 97 (564)
T TIGR00970 23 ITRAPRWLSTDLRDGNQALPDPMSPARKRRYFDLLVRIGFKEIEVGFPSAS----Q-TDFDFVREIIEQGAIPDDVTIQV 97 (564)
T ss_pred cCcCCeEecCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC----H-HHHHHHHHHHHhcCCCCCcEEEE
Confidence 678899999999999999999999999999999999999999999977654 2 577777777764 2 3689999
Q ss_pred EeCChh-hHHHHHHc--CCC--EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEE----EEeeecCCC
Q 014369 200 LTPNLK-GFEAAIAA--GAK--EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY----VSCVVGCPV 270 (426)
Q Consensus 200 l~~~~~-di~~a~~~--Gv~--~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~----v~~~fg~pd 270 (426)
|+++.+ ++++++++ +++ .|++|+++||.|++.++|+|++++++.+.+++++||++|..+..+ +.+.|+.+|
T Consensus 98 l~~~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed 177 (564)
T TIGR00970 98 LTQSREELIERTFEALSGAKRATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPES 177 (564)
T ss_pred EcCCchhhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEeccc
Confidence 999865 59999887 554 899999999999999999999999999999999999998754332 334578899
Q ss_pred CCCCCHHHHHHHHHHHHhCCC------CEEEEcCCCCCCCHHHHHHHHHHHHHhcCC---ceEEEEeCCCcCcHHHHHHH
Q 014369 271 EGAIPPSKVAYVAKELHDMGC------FEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTYGQSLPNILI 341 (426)
Q Consensus 271 ~~r~~~~~l~~~~~~l~~~Ga------d~I~l~DT~G~~~P~~v~~li~~l~~~~p~---~~i~~H~HNd~GlA~ANaLa 341 (426)
.+|++++++.++++++.++|+ ++|+|+||+|+++|.+++++|+.+++.+|. ++|++|||||+|||+||+++
T Consensus 178 ~~r~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANsla 257 (564)
T TIGR00970 178 FSDTELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAEL 257 (564)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHH
Confidence 999999999999999999987 499999999999999999999999998863 45999999999999999999
Q ss_pred HHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhh
Q 014369 342 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAA 421 (426)
Q Consensus 342 Al~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~ 421 (426)
|+++||++||+|++|+|| |+||++||+|+++|+.+|+++++|+++|.++++++++++|+++|+++|+||+++|+
T Consensus 258 Av~aGa~~v~gt~~G~GE------RaGNa~le~lv~~L~~~g~~t~idl~~L~~~s~~v~~~~~~~i~~~~PivG~~aF~ 331 (564)
T TIGR00970 258 GFLAGADRIEGCLFGNGE------RTGNVDLVTLALNLYTQGVSPNLDFSNLDEIRRTVEYCNKIPVHERHPYGGDLVYT 331 (564)
T ss_pred HHHhCCCEEEeecCcCCc------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCchhhhHhh
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred hccCC
Q 014369 422 DASKI 426 (426)
Q Consensus 422 h~Sgi 426 (426)
|+|||
T Consensus 332 h~SGi 336 (564)
T TIGR00970 332 AFSGS 336 (564)
T ss_pred hccch
Confidence 99997
No 17
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=100.00 E-value=2.6e-62 Score=518.50 Aligned_cols=285 Identities=20% Similarity=0.244 Sum_probs=259.5
Q ss_pred CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh--cCCCcEEEE
Q 014369 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD--LEGARLPVL 200 (426)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~--~~~~~l~~l 200 (426)
||++|+|+|||||||+|++++.|++++|++|++.|+++||+.||+|||...+ .|. +..+.+.. +.++++.+|
T Consensus 2 ~~~~V~I~DtTLRDG~Q~~g~~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~-----~d~-~~~~~i~~~~l~~~~i~~~ 75 (524)
T PRK12344 2 MMERIELYDTTLRDGAQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNP-----KDT-EFFKRAKELKLKHAKLAAF 75 (524)
T ss_pred CCCceEEEeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcCCh-----hHH-HHHHHHHHhCCCCcEEEEE
Confidence 6788999999999999999999999999999999999999999999976432 233 33444432 356888888
Q ss_pred eCC---------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC--
Q 014369 201 TPN---------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-- 269 (426)
Q Consensus 201 ~~~---------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p-- 269 (426)
++. ..+++.++++|++.|++++++|+.|++.++|+|++++++.+.+++++||++|++|+ |+++
T Consensus 76 ~~~~~~~i~~~~d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~------~~~e~~ 149 (524)
T PRK12344 76 GSTRRAGVSAEEDPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVI------FDAEHF 149 (524)
T ss_pred eeccccCCCcccHHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE------Eccccc
Confidence 743 34678899999999999999999999999999999999999999999999999987 5556
Q ss_pred -CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCC
Q 014369 270 -VEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS 348 (426)
Q Consensus 270 -d~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~ 348 (426)
|++|++++++.++++.+.++|+++|+|+||+|+++|.+++++|+.+++++. ++|++|+|||+|||+||+++|+++||+
T Consensus 150 ~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~~-v~i~~H~HND~GlA~ANslaAi~aGa~ 228 (524)
T PRK12344 150 FDGYKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAPG-VPLGIHAHNDSGCAVANSLAAVEAGAR 228 (524)
T ss_pred cccccCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHHHHHhCCC
Confidence 778999999999999999999999999999999999999999999999984 589999999999999999999999999
Q ss_pred EEeecccCCCCCCCCCCCCCcccHHHHHHHHHh-CC--CCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccC
Q 014369 349 TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LG--VETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASK 425 (426)
Q Consensus 349 ~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~-lG--~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sg 425 (426)
+||+|++|||| |+||++||+|+++|+. +| +++++|+++|.++++++++++|+++|+++||||+|+|+|+||
T Consensus 229 ~Vd~Tl~GlGE------RaGNa~lE~lv~~L~~~~g~~~~t~idl~~l~~is~~v~~~~~~~v~~~~pivG~~~F~h~SG 302 (524)
T PRK12344 229 QVQGTINGYGE------RCGNANLCSIIPNLQLKMGYECLPEEKLKELTEVSRFVSEIANLAPDPHQPYVGASAFAHKGG 302 (524)
T ss_pred EEEEecccccc------cccCcCHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCeECcchhhhhcc
Confidence 99999999999 9999999999999975 67 448999999999999999999999999999999999999999
Q ss_pred C
Q 014369 426 I 426 (426)
Q Consensus 426 i 426 (426)
|
T Consensus 303 i 303 (524)
T PRK12344 303 I 303 (524)
T ss_pred c
Confidence 7
No 18
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=100.00 E-value=1.9e-62 Score=483.42 Aligned_cols=274 Identities=22% Similarity=0.285 Sum_probs=254.9
Q ss_pred EeCCccccCCCCCCCCCHHHHHHHHHHH-HhCCCCeEEEecC-CCC---CccccccCHHHHHHHhHhcCCCcEEEEeCCh
Q 014369 130 VEVGPRDGLQNEKNTVPTGVKVELIRRL-VSSGLPVVEATSF-VSP---KWVPQLADARDVMEAVRDLEGARLPVLTPNL 204 (426)
Q Consensus 130 ~D~TLRDG~Q~~~~~f~~~~ki~I~~~L-~~~Gv~~IEvG~~-~s~---~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~ 204 (426)
+|+|||||+|.++..|++++|++|++.| +++||+.||+|+| +++ +++|++.|..++... +++.++.+|+++.
T Consensus 1 ~D~TlRDG~Q~~~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~---~~~~~~~a~~~~~ 77 (280)
T cd07945 1 MDTTLRDGEQTSGVSFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGL---LDRIEVLGFVDGD 77 (280)
T ss_pred CCCCCCCcCcCCCCccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhcc---ccCcEEEEecCcH
Confidence 5999999999999999999999999997 7889999999999 576 556666543322221 2367888899999
Q ss_pred hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369 205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (426)
Q Consensus 205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~ 284 (426)
+++++|+++|++.|++++++||.|+++++|+|++++++++.+++++||++|++|+++++. |+||. +++++++.++++
T Consensus 78 ~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d-~~~~~--r~~~~~~~~~~~ 154 (280)
T cd07945 78 KSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED-WSNGM--RDSPDYVFQLVD 154 (280)
T ss_pred HHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe-CCCCC--cCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998 88876 789999999999
Q ss_pred HHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCC
Q 014369 285 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAK 364 (426)
Q Consensus 285 ~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~ 364 (426)
++.++|+++|+|+||+|+++|.+++++++.+++.+|..+|++|+|||+|||+||+++|+++||++||+|++||||
T Consensus 155 ~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe----- 229 (280)
T cd07945 155 FLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGE----- 229 (280)
T ss_pred HHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccc-----
Confidence 999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHh-CCCCCCcChhhHHHHHHHHHHHhCCCCCCCCccc
Q 014369 365 GASGNVATEDVVYMLSG-LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA 415 (426)
Q Consensus 365 graGNa~lEevv~~L~~-lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~piv 415 (426)
|+||++||+++++|+. +|++++||+++|.++++++++.+|+++|+++||+
T Consensus 230 -~aGN~~~E~~v~~L~~~~g~~t~idl~~l~~~~~~v~~~~g~~~~~~~piv 280 (280)
T cd07945 230 -RAGNAPLASVIAVLKDKLKVKTNIDEKRLNRASRLVETFSGKRIPANKPIV 280 (280)
T ss_pred -cccCccHHHHHHHHHHhcCCCcCcCHHHHHHHHHHHHHHhCcCCCCCCCcC
Confidence 9999999999999964 8999999999999999999999999999999996
No 19
>PRK14847 hypothetical protein; Provisional
Probab=100.00 E-value=5.5e-61 Score=479.32 Aligned_cols=279 Identities=16% Similarity=0.148 Sum_probs=251.4
Q ss_pred CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc---CCCcEEE
Q 014369 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPV 199 (426)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~---~~~~l~~ 199 (426)
+.+...|+|+|||||+|++|..|+.++|++|+++|+++||+.||+|||+.+. .|.+.+.+.++.. .++++.+
T Consensus 29 ~~~~p~~~DTTLRDGeQ~pGv~fs~eeKl~IA~~L~~lGVd~IEvG~Pa~s~-----~e~e~ir~I~~~~~~~~~~~i~~ 103 (333)
T PRK14847 29 PAAAPIWMSTDLRDGNQALIEPMDGARKLRLFEQLVAVGLKEIEVAFPSASQ-----TDFDFVRKLIDERRIPDDVTIEA 103 (333)
T ss_pred cCCCCceecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEeeCCCCCH-----HHHHHHHHHHHhCCCCCCcEEEE
Confidence 4455679999999999999999999999999999999999999999997653 2344444444532 2688999
Q ss_pred EeCC-hhhHHHHHHcCC----CEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-------cEEEEEEeeec
Q 014369 200 LTPN-LKGFEAAIAAGA----KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-------PVRGYVSCVVG 267 (426)
Q Consensus 200 l~~~-~~di~~a~~~Gv----~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-------~v~~~v~~~fg 267 (426)
|+|. .+||+++++++. +.|++|+++|++|++.++|++++++++++.+.|++||++|. .|+ |+
T Consensus 104 ~~r~~~~dId~a~e~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~------~~ 177 (333)
T PRK14847 104 LTQSRPDLIARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYE------YS 177 (333)
T ss_pred EecCcHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEE------Ee
Confidence 9996 578999988765 56999999999999999999999999999999999999965 333 67
Q ss_pred CCCCCCCCHHHHHHHHHHHHhC-C-----CCEEEEcCCCCCCCHHHHHHHHHHHHHhcC---CceEEEEeCCCcCcHHHH
Q 014369 268 CPVEGAIPPSKVAYVAKELHDM-G-----CFEISLGDTIGVGTPGTVVPMLEAVMAVVP---VEKLAVHLHDTYGQSLPN 338 (426)
Q Consensus 268 ~pd~~r~~~~~l~~~~~~l~~~-G-----ad~I~l~DT~G~~~P~~v~~li~~l~~~~p---~~~i~~H~HNd~GlA~AN 338 (426)
.+|++|++++|+.++++.+.+. | +++|+|+||+|+++|.+++++|+.++++++ .++|++|+|||+|||+||
T Consensus 178 ~EDasRad~dfL~~~~~~a~~~~ga~r~~a~~i~l~DTVG~~~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~GlA~AN 257 (333)
T PRK14847 178 PETFSLAELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTANVYADQIEWMHRSLARRDCIVLSVHPHNDRGTAVAA 257 (333)
T ss_pred eecCCCCCHHHHHHHHHHHHHHhCCCccCCcEEEeCCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCchHHHH
Confidence 7899999999999999987555 5 778999999999999999999999999875 578999999999999999
Q ss_pred HHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchh
Q 014369 339 ILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNR 418 (426)
Q Consensus 339 aLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~ 418 (426)
+++|+++||++||+|++|+|| |+||++||+|+++|+.+|+++++|+.+|.++++++++++|+++|+++||+|-+
T Consensus 258 slaA~~aGa~~i~~tv~G~GE------RaGNa~lE~v~~~L~~~g~~~~id~~~l~~~~~~v~~~sg~~v~~~kPivg~~ 331 (333)
T PRK14847 258 AELAVLAGAERIEGCLFGNGE------RTGNVDLVALALNLERQGIASGLDFRDMAALRACVSECNQLPIDVFHPYAWLD 331 (333)
T ss_pred HHHHHHhCCCEEEeeCCcCCc------cccchhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCeecCC
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999999964
No 20
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=100.00 E-value=1.7e-57 Score=443.26 Aligned_cols=255 Identities=25% Similarity=0.307 Sum_probs=237.7
Q ss_pred EEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEEEeC-Chhh
Q 014369 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTP-NLKG 206 (426)
Q Consensus 129 I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~-~~~d 206 (426)
|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|...+ +.+++++.+.. .+++++.++++ +.++
T Consensus 1 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~------~~~e~~~~l~~~~~~~~~~~~~r~~~~~ 74 (259)
T cd07939 1 INDTTLRDGEQAPGVAFSREEKLAIARALDEAGVDEIEVGIPAMGE------EEREAIRAIVALGLPARLIVWCRAVKED 74 (259)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCH------HHHHHHHHHHhcCCCCEEEEeccCCHHH
Confidence 6899999999999999999999999999999999999999864321 22356666653 56789999995 7899
Q ss_pred HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l 286 (426)
++++.++|++.|++++++|+.|++.++|+|++++++++.+++++||++|++|. |++++.++++++++.++++++
T Consensus 75 v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~------~~~~~~~~~~~~~~~~~~~~~ 148 (259)
T cd07939 75 IEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS------VGAEDASRADPDFLIEFAEVA 148 (259)
T ss_pred HHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE------EeeccCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999876 567889999999999999999
Q ss_pred HhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCC
Q 014369 287 HDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGA 366 (426)
Q Consensus 287 ~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~gr 366 (426)
.++|++.|+|+||+|.++|.+++++++.+++.+| ++|++|+|||+|||+||+++|+++||++||+|++|||+ |
T Consensus 149 ~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~------~ 221 (259)
T cd07939 149 QEAGADRLRFADTVGILDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLGE------R 221 (259)
T ss_pred HHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccc------c
Confidence 9999999999999999999999999999999999 68999999999999999999999999999999999999 9
Q ss_pred CCcccHHHHHHHHHhC-CCCCCcChhhHHHHHHHHHH
Q 014369 367 SGNVATEDVVYMLSGL-GVETNVDLRKLMLAGDFINK 402 (426)
Q Consensus 367 aGNa~lEevv~~L~~l-G~~~~iDl~~L~~la~~v~~ 402 (426)
+||++||+++.+|+.+ |+++++|+++|.++++++++
T Consensus 222 aGN~~tE~lv~~l~~~~g~~~~idl~~l~~~~~~~~~ 258 (259)
T cd07939 222 AGNAALEEVVMALKHLYGRDTGIDTTRLPELSQLVAR 258 (259)
T ss_pred ccCcCHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh
Confidence 9999999999999996 99999999999999999876
No 21
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=100.00 E-value=1.1e-56 Score=439.43 Aligned_cols=255 Identities=25% Similarity=0.344 Sum_probs=238.5
Q ss_pred EEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCC-CCCccccccCHHHHHHHhH-hcCCCcEEEEeC-Chh
Q 014369 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVR-DLEGARLPVLTP-NLK 205 (426)
Q Consensus 129 I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~-~~~ 205 (426)
|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|+ +|+ | ++.++.++ ..+++++.+|++ +.+
T Consensus 1 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~------~-~~~~~~l~~~~~~~~~~~l~r~~~~ 73 (268)
T cd07940 1 IFDTTLRDGEQTPGVSLTPEEKLEIARQLDELGVDVIEAGFPAASPG------D-FEAVKRIAREVLNAEICGLARAVKK 73 (268)
T ss_pred CCCCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHH------H-HHHHHHHHHhCCCCEEEEEccCCHh
Confidence 5899999999999999999999999999999999999999987 442 3 35555555 468899999995 689
Q ss_pred hHHHHHHcC----CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369 206 GFEAAIAAG----AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 281 (426)
Q Consensus 206 di~~a~~~G----v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~ 281 (426)
+++.|.++| ++.|++++++||.|+++++|++++++++.+.+++++||++|++|. |++|+.++++++++.+
T Consensus 74 ~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~------~~~~~~~~~~~~~~~~ 147 (268)
T cd07940 74 DIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE------FSAEDATRTDLDFLIE 147 (268)
T ss_pred hHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE------EeeecCCCCCHHHHHH
Confidence 999999999 999999999999999999999999999999999999999999877 6778899999999999
Q ss_pred HHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCC--ceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369 282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV--EKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG 359 (426)
Q Consensus 282 ~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~--~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe 359 (426)
+++++.++|+++|+|+||+|.++|.+++++++.+++++|+ ++|++|+|||+|||+||+++|+++||++||+|++|||+
T Consensus 148 ~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG~ 227 (268)
T cd07940 148 VVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGE 227 (268)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeecccc
Confidence 9999999999999999999999999999999999999986 78999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccHHHHHHHHHhCC----CCCCcChhhHHHHHHHHHH
Q 014369 360 CPYAKGASGNVATEDVVYMLSGLG----VETNVDLRKLMLAGDFINK 402 (426)
Q Consensus 360 cP~a~graGNa~lEevv~~L~~lG----~~~~iDl~~L~~la~~v~~ 402 (426)
|+||++||+|+.+|+.+| +++++|+++|.++++++++
T Consensus 228 ------~aGN~~tE~lv~~L~~~~~~~~~~t~idl~~l~~~~~~~~~ 268 (268)
T cd07940 228 ------RAGNAALEEVVMALKTRYDYYGVETGIDTEELYETSRLVSR 268 (268)
T ss_pred ------ccccccHHHHHHHHHhcccccCCCCCcCHHHHHHHHHHHhC
Confidence 999999999999999876 9999999999999999863
No 22
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=100.00 E-value=5e-56 Score=434.00 Aligned_cols=258 Identities=20% Similarity=0.231 Sum_probs=231.9
Q ss_pred cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe-CChh
Q 014369 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-PNLK 205 (426)
Q Consensus 127 V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~~~~ 205 (426)
.+|+|||||||+|.+++.|++++|++|++.|+++||+.||+|+|. ..|++.+..+++. +.....++.+++ ++.+
T Consensus 1 ~~I~D~TLRDG~Q~~~~~~s~~~k~~i~~~L~~~Gv~~IEvG~P~---~~~~~~~~~~~l~--~~~~~~~v~~~~r~~~~ 75 (262)
T cd07948 1 FKIIDSTLREGEQFANAFFDTEDKIEIAKALDAFGVDYIELTSPA---ASPQSRADCEAIA--KLGLKAKILTHIRCHMD 75 (262)
T ss_pred CEEEECCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCC---CCHHHHHHHHHHH--hCCCCCcEEEEecCCHH
Confidence 369999999999999999999999999999999999999999854 3466544333332 222235666665 5789
Q ss_pred hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (426)
Q Consensus 206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~ 285 (426)
|+++|+++|++.|++++++||.|++.+++++++++++.+.+++++||++|++|+++++.+ ++++++++.+++++
T Consensus 76 di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda------~r~~~~~l~~~~~~ 149 (262)
T cd07948 76 DARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDS------FRSDLVDLLRVYRA 149 (262)
T ss_pred HHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEee------CCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999777654 56679999999999
Q ss_pred HHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCC
Q 014369 286 LHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKG 365 (426)
Q Consensus 286 l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~g 365 (426)
+.++|+++|+|+||+|.++|.+++++++.+++.++ .+|++|+|||+|||+||+++|+++||++||+|++||||
T Consensus 150 ~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlGe------ 222 (262)
T cd07948 150 VDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVS-CDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLGIGE------ 222 (262)
T ss_pred HHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccc------
Confidence 99999999999999999999999999999999998 68999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHhC---CCCCCcChhhHHHHHHHHHH
Q 014369 366 ASGNVATEDVVYMLSGL---GVETNVDLRKLMLAGDFINK 402 (426)
Q Consensus 366 raGNa~lEevv~~L~~l---G~~~~iDl~~L~~la~~v~~ 402 (426)
|+||++||+|+.+|+.. |+++++|+++|.++++++++
T Consensus 223 raGn~~~e~~~~~l~~~~~~~~~~~~~l~~l~~~~~~v~~ 262 (262)
T cd07948 223 RNGITPLGGLIARMYTADPEYVVSKYKLELLPELERLVAD 262 (262)
T ss_pred ccCCccHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHhC
Confidence 99999999999999754 67789999999999999863
No 23
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-56 Score=453.15 Aligned_cols=288 Identities=20% Similarity=0.264 Sum_probs=267.9
Q ss_pred CCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcC-CCcEEEE
Q 014369 122 GIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE-GARLPVL 200 (426)
Q Consensus 122 ~~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~-~~~l~~l 200 (426)
..++.++++|+|||||+|+++..|++++|++|+++|+..||++||+|||+++. .|+++...+++..+ ...++++
T Consensus 53 ~~~n~vr~~dttLRdGeQs~ga~~~~~qK~eiar~L~~~gvd~IEv~fP~aSe-----~~~~~~~~i~k~~g~~~~I~~l 127 (560)
T KOG2367|consen 53 SDVNYVRVLDTTLRDGEQSPGAFLTTEQKLEIARQLAKLGVDIIEVGFPVASE-----QDFEDCKTIAKTLGYVPVICTL 127 (560)
T ss_pred cCcCcceeecccccccccCCCCcCCcHHHHHHHHHHHhcCcCEEEecCcccCc-----chHHHHHHHHHhCCCCceEEEe
Confidence 46888999999999999999999999999999999999999999999998764 46666666666555 4788999
Q ss_pred eCC-hhhHHHHHHcCCC----EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecCCCCCCC
Q 014369 201 TPN-LKGFEAAIAAGAK----EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAI 274 (426)
Q Consensus 201 ~~~-~~di~~a~~~Gv~----~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~pd~~r~ 274 (426)
+|+ ..+++++++++.. +|++|+++||.|+++++++|.+|+++.+.++++.+|.+|. .++ |++++.+|+
T Consensus 128 ~rc~~~di~~tvEAl~~aKr~~Vh~~~aTSd~~rey~~~kskeevi~~Ave~ikfvkslg~~~ie------FSpEd~~rs 201 (560)
T KOG2367|consen 128 IRCHMDDIERTVEALKYAKRPRVHVFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIE------FSPEDFGRS 201 (560)
T ss_pred eccchHHHHHHHHHhhccCcceEEEEecccHHHHHHHhcccHHHHHHHHHHHHHHHHhcccceEE------ECccccccC
Confidence 997 5689999998654 5999999999999999999999999999999999999994 455 899999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCC---ceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369 275 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 275 ~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~---~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD 351 (426)
+++|+.+++++...+|+..+.|+||+|+.+|.+++++|+.++.+.|. ..|+.|||||+|+|+||+..++.|||++|+
T Consensus 202 e~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y~~tn~~~~e~v~Is~HcHND~G~a~Ant~~g~~AGA~~VE 281 (560)
T KOG2367|consen 202 ELEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEYLKTNTPGREKVCISTHCHNDLGCATANTELGLLAGARQVE 281 (560)
T ss_pred cHHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHHHHHccCCCceeEEEEEeecCCccHHHHHHHHHhhcCcceEE
Confidence 99999999999999999999999999999999999999999998874 369999999999999999999999999999
Q ss_pred ecccCCCCCCCCCCCCCcccHHHHHHHHHhCC---CCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369 352 CSVAGLGGCPYAKGASGNVATEDVVYMLSGLG---VETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI 426 (426)
Q Consensus 352 ~Sv~GlGecP~a~graGNa~lEevv~~L~~lG---~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi 426 (426)
+||+|+|| |+||++||+|+++|+..| +...+|+.+|.++.++++++.++++|+++||+|.++|+|+|||
T Consensus 282 ~~i~GiGE------RtGn~~L~~v~m~my~~g~~~vs~~y~~~dlr~I~~mVed~~~i~v~p~~pi~G~~~Fth~SGi 353 (560)
T KOG2367|consen 282 VTINGIGE------RTGNAPLEEVVMAMYCRGPDYVSGNYTFIDLREIENMVEDCTGINVPPHKPIVGANAFTHESGI 353 (560)
T ss_pred EEeecccc------ccCCCCHHHHHHHheecCchhcCCccccccHHHHHHHHHHhhcCCCCCCCccccceeEeecccc
Confidence 99999999 999999999999999888 7888999999999999999999999999999999999999997
No 24
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=100.00 E-value=6.5e-56 Score=437.14 Aligned_cols=263 Identities=19% Similarity=0.180 Sum_probs=234.9
Q ss_pred cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHH-HHHHHh-Hhc---CCCcEEEEe
Q 014369 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR-DVMEAV-RDL---EGARLPVLT 201 (426)
Q Consensus 127 V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~-~v~~~i-~~~---~~~~l~~l~ 201 (426)
..++|+|||||+|+++..|++++|++|++.|+++||+.||+||| ++.+.+ ++++.+ +.. +++++.+|+
T Consensus 2 ~~~~d~tlRDG~Q~~g~~~s~~~Ki~ia~~L~~~Gv~~IE~gfP-------~~~~~e~e~~~~i~~~~~~~~~~~~~al~ 74 (284)
T cd07942 2 PIWCSVDLRDGNQALAEPMSVEQKLRFFKLLVKIGFKEIEVGFP-------SASQTDFDFVRELIEEDLIPDDVTIQVLT 74 (284)
T ss_pred CcccCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-------CCCHHHHHHHHHHHHccCCCCCCEEEEEc
Confidence 35789999999999999999999999999999999999999974 455555 666666 432 368899999
Q ss_pred CChh-hHHHHHHc--CCC--EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcE-EEEEEeeecCCCCCCCC
Q 014369 202 PNLK-GFEAAIAA--GAK--EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV-RGYVSCVVGCPVEGAIP 275 (426)
Q Consensus 202 ~~~~-di~~a~~~--Gv~--~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v-~~~v~~~fg~pd~~r~~ 275 (426)
|+.+ |+++|+++ |++ .|++++++||.|+++|+|+|++|+++++.+++++||++|++. ...+-+.|+.+|++|++
T Consensus 75 r~~~~die~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~ 154 (284)
T cd07942 75 QAREDLIERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTE 154 (284)
T ss_pred CCChhhHHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCC
Confidence 9865 59999998 665 799999999999999999999999999999999999999751 11233447788889999
Q ss_pred HHHHHHHHHHHHhC---CCC---EEEEcCCCCCCCHHHHHHHHHHHHHhcCC---ceEEEEeCCCcCcHHHHHHHHHHcC
Q 014369 276 PSKVAYVAKELHDM---GCF---EISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTYGQSLPNILISLQMG 346 (426)
Q Consensus 276 ~~~l~~~~~~l~~~---Gad---~I~l~DT~G~~~P~~v~~li~~l~~~~p~---~~i~~H~HNd~GlA~ANaLaAl~aG 346 (426)
++++.++++.+.++ |++ +|+|+||+|+++|.++.++++.+++.+|. ++|++|+|||+|||+||+++|+++|
T Consensus 155 ~~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG 234 (284)
T cd07942 155 LDFALEVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAG 234 (284)
T ss_pred HHHHHHHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhC
Confidence 99999999999887 544 99999999999999999999999999863 4699999999999999999999999
Q ss_pred CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHH
Q 014369 347 ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK 402 (426)
Q Consensus 347 a~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~ 402 (426)
|++||+|++|+|| |+||++||+|+++|+.+|+++++|+++|.++++++++
T Consensus 235 ~~~id~~~~g~Ge------RaGN~~~E~lv~~l~~~g~~t~id~~~l~~~s~~v~~ 284 (284)
T cd07942 235 ADRVEGTLFGNGE------RTGNVDLVTLALNLYSQGVDPGLDFSDIDEIIRVVEE 284 (284)
T ss_pred CCEEEeeCccCCc------cccchhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhC
Confidence 9999999999999 9999999999999999999999999999999999864
No 25
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=100.00 E-value=8.4e-55 Score=421.62 Aligned_cols=263 Identities=40% Similarity=0.582 Sum_probs=249.4
Q ss_pred EeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEEEeCC-hhhH
Q 014369 130 VEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPN-LKGF 207 (426)
Q Consensus 130 ~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~~-~~di 207 (426)
+|||||||+|++++.|++++|+++++.|+++||++||+|+|..++++|++.|.+++++.+++ .++.++.+++++ .+++
T Consensus 1 ~D~tlRDG~q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i 80 (265)
T cd03174 1 TDTTLRDGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGI 80 (265)
T ss_pred CCCCCCCcccCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhH
Confidence 59999999999999999999999999999999999999999988888999999888888875 457999999988 8899
Q ss_pred HHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369 208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH 287 (426)
Q Consensus 208 ~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~ 287 (426)
+.+.++|++.|+++++.|+.|.+.+++++.++.++.+.+.++++|++|+++.++++.++.| ..+++++.++++.+.
T Consensus 81 ~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~----~~~~~~l~~~~~~~~ 156 (265)
T cd03174 81 ERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC----KTDPEYVLEVAKALE 156 (265)
T ss_pred HHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC----CCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888766533 378999999999999
Q ss_pred hCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCC
Q 014369 288 DMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGAS 367 (426)
Q Consensus 288 ~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~gra 367 (426)
++|++.|+|+||+|.++|+++.++++.+++.+|..+|++|+|||+|||+||+++|+++||++||+|++|||+ |+
T Consensus 157 ~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~------~~ 230 (265)
T cd03174 157 EAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGE------RA 230 (265)
T ss_pred HcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccc------cc
Confidence 999999999999999999999999999999999779999999999999999999999999999999999999 99
Q ss_pred CcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHH
Q 014369 368 GNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK 402 (426)
Q Consensus 368 GNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~ 402 (426)
||++||+++.+|+.+|+++++|+++|.++++++++
T Consensus 231 Gn~~~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 265 (265)
T cd03174 231 GNAATEDLVAALEGLGIDTGIDLEKLLEISRYVEE 265 (265)
T ss_pred cCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999998763
No 26
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=100.00 E-value=1.5e-54 Score=426.79 Aligned_cols=256 Identities=21% Similarity=0.262 Sum_probs=229.4
Q ss_pred cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCC-----CCeEEEecCCCCCccccccCHHHHHHHhHhcC-CCcEEEE
Q 014369 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSG-----LPVVEATSFVSPKWVPQLADARDVMEAVRDLE-GARLPVL 200 (426)
Q Consensus 127 V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~G-----v~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~-~~~l~~l 200 (426)
|+|+|+|||||+|.++.. ++++|++|++.|.++| |+.||+++|++ +|.+++.+.++... ...+.++
T Consensus 1 i~i~d~tlRDG~Q~~~~~-~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~~~-------~d~~~v~~~~~~~~~~~~v~~~ 72 (279)
T cd07947 1 IWITDTTFRDGQQARPPY-TVEQIVKIYDYLHELGGGSGVIRQTEFFLYTE-------KDREAVEACLDRGYKFPEVTGW 72 (279)
T ss_pred CEEEeCCCCCcCCCCCCC-CHHHHHHHHHHHHHcCCCCCccceEEecCcCh-------HHHHHHHHHHHcCCCCCEEEEE
Confidence 679999999999999885 9999999999999999 99999977654 57778887776422 3455555
Q ss_pred e-CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCH---
Q 014369 201 T-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP--- 276 (426)
Q Consensus 201 ~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~--- 276 (426)
. +|.+|+++|+++|++.|++++|+||.|+++|+|+|++++++++.+++++||++|+.|++++ ++.+|.++
T Consensus 73 ~r~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~------ed~~r~d~~~~ 146 (279)
T cd07947 73 IRANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL------EDITRADIYGF 146 (279)
T ss_pred ecCCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE------EcccCCCcccc
Confidence 4 6899999999999999999999999999999999999999999999999999999998655 46677776
Q ss_pred --HHHHHHHHHHHhCCCC-EEEEcCCCCCCCH-------HHHHHHHHHHHHh--cCCceEEEEeCCCcCcHHHHHHHHHH
Q 014369 277 --SKVAYVAKELHDMGCF-EISLGDTIGVGTP-------GTVVPMLEAVMAV--VPVEKLAVHLHDTYGQSLPNILISLQ 344 (426)
Q Consensus 277 --~~l~~~~~~l~~~Gad-~I~l~DT~G~~~P-------~~v~~li~~l~~~--~p~~~i~~H~HNd~GlA~ANaLaAl~ 344 (426)
+++.++++.+.++|++ +|+|+||+|+++| .++.++++.++++ +|..+|++|+|||+|||+||+++|++
T Consensus 147 v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~laA~~ 226 (279)
T cd07947 147 VLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAAWL 226 (279)
T ss_pred hHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHHHHH
Confidence 3677777777779999 8999999999988 6899999999998 56668999999999999999999999
Q ss_pred cCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhC-CCCCCcChhhHHHHHHHHHH
Q 014369 345 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL-GVETNVDLRKLMLAGDFINK 402 (426)
Q Consensus 345 aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~l-G~~~~iDl~~L~~la~~v~~ 402 (426)
+||++||+|++|||+ |+||++||+|+++|+.+ |+++++|+++|.++++++++
T Consensus 227 aG~~~vd~sv~GlGe------~aGN~~tE~lv~~l~~~~g~~t~idl~~l~~~~~~~~~ 279 (279)
T cd07947 227 YGASWVNCTLLGIGE------RTGNCPLEAMVIEYAQLKGNFDGMNLEVITEIAEYFEK 279 (279)
T ss_pred hCCCEEEEecccccc------cccchhHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhC
Confidence 999999999999999 99999999999999997 99999999999999998763
No 27
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=100.00 E-value=7.6e-54 Score=420.90 Aligned_cols=258 Identities=22% Similarity=0.294 Sum_probs=230.4
Q ss_pred EEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCC-CCCccccccCHHHHHHHhHhc--CCCcEEEEeC---
Q 014369 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDL--EGARLPVLTP--- 202 (426)
Q Consensus 129 I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~~--- 202 (426)
|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|. +++ +. +.++.++++ +++++.++++
T Consensus 1 i~D~TLRDG~Q~~~~~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~ 73 (273)
T cd07941 1 IYDTTLRDGTQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNPK------DT-EFFARAKKLKLKHAKLAAFGSTRR 73 (273)
T ss_pred CCcCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCHH------HH-HHHHHHHHcCCCCcEEEEEecccc
Confidence 5899999999999999999999999999999999999999964 443 22 223344332 3678877763
Q ss_pred ------ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCH
Q 014369 203 ------NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 276 (426)
Q Consensus 203 ------~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~ 276 (426)
+..+++.++++|++.|++++++|+.|++.++|++++++++.+.+++++||++|++|.++.+. | .+.+++++
T Consensus 74 ~~i~~~~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~-~--~d~~~~~~ 150 (273)
T cd07941 74 AGVKAEEDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEH-F--FDGYKANP 150 (273)
T ss_pred cCCCccchHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEe-c--cccCCCCH
Confidence 23478899999999999999999999999999999999999999999999999999876443 3 35668999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 014369 277 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG 356 (426)
Q Consensus 277 ~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~G 356 (426)
+++.++++.+.++|+++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++||++||+|++|
T Consensus 151 ~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~G 230 (273)
T cd07941 151 EYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTING 230 (273)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEeccc
Confidence 99999999999999999999999999999999999999999999779999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcccHHHHHHHHH-hCCCC--CCcChhhHHHHHHHHHH
Q 014369 357 LGGCPYAKGASGNVATEDVVYMLS-GLGVE--TNVDLRKLMLAGDFINK 402 (426)
Q Consensus 357 lGecP~a~graGNa~lEevv~~L~-~lG~~--~~iDl~~L~~la~~v~~ 402 (426)
||| |+||++||+++.+|+ .+|++ +++|+++|.++++++++
T Consensus 231 lGe------raGn~~~e~~~~~L~~~~~~~~~~~~~~~~l~~~~~~v~~ 273 (273)
T cd07941 231 YGE------RCGNANLCSIIPNLQLKMGYECLPEENLKKLTELSRFVSE 273 (273)
T ss_pred ccc------ccccccHHHHHHHHHhccCCCCcCccCHHHHHHHHHHHhC
Confidence 999 999999999999998 46776 48999999999999863
No 28
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=100.00 E-value=2.1e-53 Score=415.34 Aligned_cols=250 Identities=26% Similarity=0.352 Sum_probs=227.7
Q ss_pred cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCC-----CCCccccccCHHHHHHHhH-hcCCCcEEEE
Q 014369 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-----SPKWVPQLADARDVMEAVR-DLEGARLPVL 200 (426)
Q Consensus 127 V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~-----s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l 200 (426)
|+|+|||||||+|.+++.|++++|++|++.|+++||+.||+|++. +.++.|+..+.++.++.++ ..+++++.++
T Consensus 1 i~i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~ 80 (263)
T cd07943 1 VYIHDVTLRDGMHAVRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVL 80 (263)
T ss_pred CEEEeCCCCcCcccCCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEE
Confidence 689999999999999999999999999999999999999999652 2344566677777777774 5678999988
Q ss_pred e----CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCH
Q 014369 201 T----PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 276 (426)
Q Consensus 201 ~----~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~ 276 (426)
+ .+.++++++.++|++.|++++++|+. ..+.+++++||++|+++.++++. ++++++
T Consensus 81 ~~~~~~~~~~i~~a~~~g~~~iri~~~~s~~--------------~~~~~~i~~ak~~G~~v~~~~~~------~~~~~~ 140 (263)
T cd07943 81 LLPGIGTVDDLKMAADLGVDVVRVATHCTEA--------------DVSEQHIGAARKLGMDVVGFLMM------SHMASP 140 (263)
T ss_pred ecCCccCHHHHHHHHHcCCCEEEEEechhhH--------------HHHHHHHHHHHHCCCeEEEEEEe------ccCCCH
Confidence 5 35789999999999999999999884 34678999999999999988874 467899
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 014369 277 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG 356 (426)
Q Consensus 277 ~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~G 356 (426)
+++.++++.+.++|+++|+|+||+|.++|.+++++++.++++++.++|++|+|||+|||+||+++|+++||++||+|++|
T Consensus 141 ~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~G 220 (263)
T cd07943 141 EELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAG 220 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEEEeeccc
Confidence 99999999999999999999999999999999999999999998668999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHH
Q 014369 357 LGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK 402 (426)
Q Consensus 357 lGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~ 402 (426)
||| |+||++||+++.+|+.+|+++++|+++|.++++++.+
T Consensus 221 lG~------~aGN~~~E~lv~~L~~~g~~~~idl~~l~~~~~~~~~ 260 (263)
T cd07943 221 LGA------GAGNTPLEVLVAVLERMGIETGIDLYKLMDAAEDLVR 260 (263)
T ss_pred ccC------CcCCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Confidence 999 9999999999999999999999999999999998765
No 29
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=100.00 E-value=2.1e-52 Score=411.20 Aligned_cols=249 Identities=23% Similarity=0.290 Sum_probs=226.7
Q ss_pred EEeCCccccCCCC-CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCC----CccccccCHHHHHHHhH-hcCCCcEEEEeC
Q 014369 129 IVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEATSFVSP----KWVPQLADARDVMEAVR-DLEGARLPVLTP 202 (426)
Q Consensus 129 I~D~TLRDG~Q~~-~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~----~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~ 202 (426)
|+|||||||+|++ +..|+.++|++|++.|+++||+.||+|+++.. ++. ..++++.++.++ ..+++++.+|++
T Consensus 1 i~DtTlRDG~Qs~~~~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~--~~~~~e~i~~~~~~~~~~~l~~~~r 78 (275)
T cd07937 1 ITDTTLRDAHQSLLATRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFL--NEDPWERLRELRKAMPNTPLQMLLR 78 (275)
T ss_pred CCcCcccchhhchhceeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhcccc--CCCHHHHHHHHHHhCCCCceehhcc
Confidence 5799999999998 78999999999999999999999999987642 221 246677777666 567899999887
Q ss_pred C--------------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC
Q 014369 203 N--------------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC 268 (426)
Q Consensus 203 ~--------------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~ 268 (426)
. ..+++++.++|++.|+++++.|+ ++++.+.+++||++|+++.+++++++
T Consensus 79 ~~~~~~~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~i~~~~-- 142 (275)
T cd07937 79 GQNLVGYRHYPDDVVELFVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGKHVEGAICYTG-- 142 (275)
T ss_pred cccccCccCCCcHHHHHHHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCCeEEEEEEecC--
Confidence 3 46899999999999999999988 57788999999999999998887654
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCC
Q 014369 269 PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS 348 (426)
Q Consensus 269 pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~ 348 (426)
.++++++++.++++++.++|+++|+|+||+|.++|.++.++++.++++++ .+|++|+|||+|||+||+++|+++||+
T Consensus 143 --~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~ 219 (275)
T cd07937 143 --SPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVD 219 (275)
T ss_pred --CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCC
Confidence 47899999999999999999999999999999999999999999999998 689999999999999999999999999
Q ss_pred EEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHh
Q 014369 349 TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL 404 (426)
Q Consensus 349 ~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~ 404 (426)
+||+|++|||| |+||++||+++.+|+.+|+++++|+++|.+++++++++.
T Consensus 220 ~vd~sv~GlG~------~aGN~~~E~l~~~L~~~g~~~~~dl~~l~~~~~~v~~~~ 269 (275)
T cd07937 220 IVDTAISPLSG------GTSQPSTESMVAALRGTGRDTGLDLEKLEEISEYFEEVR 269 (275)
T ss_pred EEEEecccccC------CcCChhHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999999999999998865
No 30
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=100.00 E-value=1.4e-50 Score=408.49 Aligned_cols=253 Identities=27% Similarity=0.371 Sum_probs=225.0
Q ss_pred CccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCC-----CCC-ccccccCHHHHHHHh-HhcCCCcE
Q 014369 125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-----SPK-WVPQLADARDVMEAV-RDLEGARL 197 (426)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~-----s~~-~~p~~~D~~~v~~~i-~~~~~~~l 197 (426)
++|+|+|||||||+|..++.|++++|++|++.|+++||+.||+|+.. +.. ..|... .++.++.+ +..+++++
T Consensus 2 ~~i~I~D~TLRDG~q~~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~-~~e~i~~~~~~~~~~~~ 80 (337)
T PRK08195 2 KKIYISDVTLRDGMHAVRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHT-DEEYIEAAAEVVKQAKI 80 (337)
T ss_pred CceEEEECCCCCcCcCCCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCC-HHHHHHHHHHhCCCCEE
Confidence 56999999999999999999999999999999999999999998542 111 123333 45566665 46788999
Q ss_pred EEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC
Q 014369 198 PVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA 273 (426)
Q Consensus 198 ~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r 273 (426)
.+|. | +.+++++|.++|++.||++++.++. +.+.+.+++||++|++|.+++++ +++
T Consensus 81 ~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~--------------~~~~~~i~~ak~~G~~v~~~l~~------a~~ 140 (337)
T PRK08195 81 AALLLPGIGTVDDLKMAYDAGVRVVRVATHCTEA--------------DVSEQHIGLARELGMDTVGFLMM------SHM 140 (337)
T ss_pred EEEeccCcccHHHHHHHHHcCCCEEEEEEecchH--------------HHHHHHHHHHHHCCCeEEEEEEe------ccC
Confidence 9865 4 5789999999999999999887773 34678999999999999988885 367
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369 274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV-PVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 352 (426)
Q Consensus 274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~-p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~ 352 (426)
++++++.++++.+.++|+++|+|+||+|.++|.+++++++.+++++ |+++|+||+|||+|||+||+++|+++||++||+
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~ 220 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRIDG 220 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEe
Confidence 8999999999999999999999999999999999999999999999 578999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHh
Q 014369 353 SVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL 404 (426)
Q Consensus 353 Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~ 404 (426)
|+.|||+ |+||++||+++++|+.+|++++||+.+|+++++.+..-+
T Consensus 221 Sl~GlG~------~aGN~~tE~lv~~L~~~g~~tgidl~~l~~~a~~~~~p~ 266 (337)
T PRK08195 221 SLAGLGA------GAGNTPLEVLVAVLDRMGWETGVDLYKLMDAAEDLVRPL 266 (337)
T ss_pred cChhhcc------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhhh
Confidence 9999999 999999999999999999999999999999999887654
No 31
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=100.00 E-value=8.3e-51 Score=398.11 Aligned_cols=249 Identities=17% Similarity=0.209 Sum_probs=220.4
Q ss_pred EEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc----cccccCHHHHHHHhHhc-CCCcEEEEeCC
Q 014369 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKW----VPQLADARDVMEAVRDL-EGARLPVLTPN 203 (426)
Q Consensus 129 I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~----~p~~~D~~~v~~~i~~~-~~~~l~~l~~~ 203 (426)
|+|||||||+|.+++.|+.++|++|++.|+++||+.||+||+..+.. ...+.+.+.+.+..+.. +++++.++++.
T Consensus 1 i~D~TLRDG~q~~~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 80 (266)
T cd07944 1 ILDCTLRDGGYVNNWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDY 80 (266)
T ss_pred CccCCcccCccccCccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECC
Confidence 58999999999999999999999999999999999999999875321 11234555555555544 48999999864
Q ss_pred ----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHH
Q 014369 204 ----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV 279 (426)
Q Consensus 204 ----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l 279 (426)
.++++.+.++|++.|+++++.++ ++.+.+++++||++|++|.++++.+ ++++++++
T Consensus 81 ~~~~~~~l~~a~~~gv~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~~~~a------~~~~~~~~ 140 (266)
T cd07944 81 GNDDIDLLEPASGSVVDMIRVAFHKHE--------------FDEALPLIKAIKEKGYEVFFNLMAI------SGYSDEEL 140 (266)
T ss_pred CCCCHHHHHHHhcCCcCEEEEeccccc--------------HHHHHHHHHHHHHCCCeEEEEEEee------cCCCHHHH
Confidence 47899999999999999987654 7888899999999999999877754 46899999
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 014369 280 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG 358 (426)
Q Consensus 280 ~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlG 358 (426)
.++++.+.++|+++|+|+||+|.++|++++++++.++++++ +++|++|+|||+|||+||+++|+++||++||+|++|||
T Consensus 141 ~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G 220 (266)
T cd07944 141 LELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMG 220 (266)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCC
Confidence 99999999999999999999999999999999999999987 36899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHH-HHHHHHh
Q 014369 359 GCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAG-DFINKHL 404 (426)
Q Consensus 359 ecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la-~~v~~~~ 404 (426)
| |+||++||+++++|+.+ +++++|+++|.+++ +++....
T Consensus 221 ~------~aGN~~~E~~v~~l~~~-~~~~~dl~~l~~~~~~~~~~~~ 260 (266)
T cd07944 221 R------GAGNLPTELLLDYLNNK-FGKKYNLEPVLELIDEYIAPLK 260 (266)
T ss_pred C------CcCcHHHHHHHHHHHHh-hccCCCHHHHHHHHHHHHHHHH
Confidence 9 99999999999999988 78899999999999 7776654
No 32
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=100.00 E-value=2.5e-50 Score=405.88 Aligned_cols=254 Identities=26% Similarity=0.335 Sum_probs=223.9
Q ss_pred CccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCC-----CCC-ccccccCHHHHHHHhHhcCCCcEE
Q 014369 125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-----SPK-WVPQLADARDVMEAVRDLEGARLP 198 (426)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~-----s~~-~~p~~~D~~~v~~~i~~~~~~~l~ 198 (426)
++|+|+|||||||+|..++.|++++|++|++.|+++||+.||+|+.. +.. ..|...+.+.+.+..+.++++++.
T Consensus 1 ~~i~i~D~TLRDG~q~~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~ 80 (333)
T TIGR03217 1 KKLYITDVTLRDGMHAIRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVA 80 (333)
T ss_pred CCcEEEECCCCCCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEE
Confidence 46999999999999999999999999999999999999999998531 111 123334444444455567889999
Q ss_pred EEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCC
Q 014369 199 VLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI 274 (426)
Q Consensus 199 ~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~ 274 (426)
+++ | +.++++.|.++|++.||++++.++. +.+.+.+++||++|++|.++++++ .++
T Consensus 81 ~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~--------------d~~~~~i~~ak~~G~~v~~~l~~s------~~~ 140 (333)
T TIGR03217 81 VLLLPGIGTVHDLKAAYDAGARTVRVATHCTEA--------------DVSEQHIGMARELGMDTVGFLMMS------HMT 140 (333)
T ss_pred EEeccCccCHHHHHHHHHCCCCEEEEEeccchH--------------HHHHHHHHHHHHcCCeEEEEEEcc------cCC
Confidence 776 4 6789999999999999999987773 346789999999999999888854 478
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369 275 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 353 (426)
Q Consensus 275 ~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S 353 (426)
+++++.++++.+.++|++.|+|+||+|.++|.++.++++.++++++ +++|+||+|||+|||+||+++|+++||++||+|
T Consensus 141 ~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~S 220 (333)
T TIGR03217 141 PPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDAS 220 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEEEee
Confidence 9999999999999999999999999999999999999999999985 678999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHh
Q 014369 354 VAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL 404 (426)
Q Consensus 354 v~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~ 404 (426)
+.|||+ ++||++||+++.+|+.+|+++++|+.+|+++++.+-.-+
T Consensus 221 l~G~G~------~aGN~~~E~lv~~l~~~g~~tgidl~~l~~~a~~~v~p~ 265 (333)
T TIGR03217 221 LRGLGA------GAGNAPLEVFVAVLDRLGWNTGCDLFKLMDAAEDIVRPL 265 (333)
T ss_pred cccccc------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHhh
Confidence 999999 999999999999999999999999999999998776543
No 33
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=7.5e-50 Score=415.54 Aligned_cols=272 Identities=21% Similarity=0.274 Sum_probs=233.5
Q ss_pred CccEEEeCCccccCCCC-CCCCCHHHHHHHHHHHHhCCCCeEEEe----cCCCCCccccccCHHHHHHHhHh-cCCCcEE
Q 014369 125 RFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEAT----SFVSPKWVPQLADARDVMEAVRD-LEGARLP 198 (426)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~-~~~f~~~~ki~I~~~L~~~Gv~~IEvG----~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~ 198 (426)
++|+|+|||||||+|++ +..|++++|++|++.|+++||+.||+| |.++-.++ ..++++.++.+++ +++++++
T Consensus 2 ~~V~I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~--~e~p~e~l~~l~~~~~~~~l~ 79 (448)
T PRK12331 2 TKIKITETVLRDGQQSLIATRMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFL--NEDPWERLRKIRKAVKKTKLQ 79 (448)
T ss_pred CccEEEECCCCccccCcCCcccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccC--CCCHHHHHHHHHHhCCCCEEE
Confidence 46999999999999998 568999999999999999999999998 32211111 1467888888874 5899999
Q ss_pred EEeC--Ch------------hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Q 014369 199 VLTP--NL------------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC 264 (426)
Q Consensus 199 ~l~~--~~------------~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~ 264 (426)
+|++ |. +++++|+++|++.|++|+++|+.+ ++.+++++||++|+.+++++++
T Consensus 80 ~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~--------------n~~~~v~~ak~~G~~v~~~i~~ 145 (448)
T PRK12331 80 MLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVR--------------NLETAVKATKKAGGHAQVAISY 145 (448)
T ss_pred EEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHH--------------HHHHHHHHHHHcCCeEEEEEEe
Confidence 8875 32 456999999999999999999963 3567899999999999999998
Q ss_pred eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHH
Q 014369 265 VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 344 (426)
Q Consensus 265 ~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~ 344 (426)
+++ .+++++++.++++.+.++|+++|+|+||+|+++|.+++++|++++++++ ++|++|+|||+|||+||+++|++
T Consensus 146 t~~----p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~-~pi~~H~Hnt~GlA~AN~laAie 220 (448)
T PRK12331 146 TTS----PVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVT-VPLEVHTHATSGIAEMTYLKAIE 220 (448)
T ss_pred ecC----CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCCcHHHHHHHHHH
Confidence 864 3689999999999999999999999999999999999999999999998 68999999999999999999999
Q ss_pred cCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCC-----CCCCCcccchhh
Q 014369 345 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRP-----SGSKTAIALNRI 419 (426)
Q Consensus 345 aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~-----~~~~~pivG~~v 419 (426)
+||++||+|++|+|+ |+||++||+++++|+.+|+++++|+++|.+++++++++...- .++....+-.++
T Consensus 221 aGad~vD~sv~glg~------gaGN~~tE~lv~~L~~~g~~tgidl~~L~~~~~~~~~~r~~y~~~~~~~~~~~~~~~~v 294 (448)
T PRK12331 221 AGADIIDTAISPFAG------GTSQPATESMVAALQDLGYDTGLDLEELSEIAEYFNPIRDHYREEGILNPKVKDVEPKT 294 (448)
T ss_pred cCCCEEEeeccccCC------CcCCHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCcccccCCcCe
Confidence 999999999999999 999999999999999999999999999999999997653211 233333444556
Q ss_pred hhhc
Q 014369 420 AADA 423 (426)
Q Consensus 420 f~h~ 423 (426)
+.|+
T Consensus 295 ~~~~ 298 (448)
T PRK12331 295 LIYQ 298 (448)
T ss_pred eecC
Confidence 6654
No 34
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=2e-49 Score=414.71 Aligned_cols=280 Identities=20% Similarity=0.279 Sum_probs=245.3
Q ss_pred CCCccEEEeCCccccCCCCC-CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc-cc-cccCHHHHHHHhH-hcCCCcEE
Q 014369 123 IPRFVKIVEVGPRDGLQNEK-NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKW-VP-QLADARDVMEAVR-DLEGARLP 198 (426)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~-~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~-~p-~~~D~~~v~~~i~-~~~~~~l~ 198 (426)
|+++|+|+|||||||+|+++ ..|++++++.|++.|+++|++.||+|..+..+. +. --.|+|+.++.++ .+++++++
T Consensus 1 ~~~~i~i~DTTLRDG~QSl~atr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lq 80 (499)
T PRK12330 1 MPRKIGVTELALRDAHQSLMATRMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQ 80 (499)
T ss_pred CCCCcEEEECCccchhhcccCccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEE
Confidence 56789999999999999988 799999999999999999999999983322110 00 1268899999888 57999999
Q ss_pred EEeC--C------------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Q 014369 199 VLTP--N------------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC 264 (426)
Q Consensus 199 ~l~~--~------------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~ 264 (426)
+|+| | ..+++.++++|++.||||.++||+ +.++.+++.+|+.|..++++|++
T Consensus 81 mL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv--------------~nl~~ai~~vk~ag~~~~~~i~y 146 (499)
T PRK12330 81 MLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP--------------RNLEHAMKAVKKVGKHAQGTICY 146 (499)
T ss_pred EEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChH--------------HHHHHHHHHHHHhCCeEEEEEEE
Confidence 9997 2 246899999999999999999994 55678888999999999999988
Q ss_pred eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHH
Q 014369 265 VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISL 343 (426)
Q Consensus 265 ~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl 343 (426)
..+ | ..+++++.++++.+.++||++|+|+||+|+++|.+++++|+++++++| +++|++|+|||+|||+||+++|+
T Consensus 147 t~s-p---~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAi 222 (499)
T PRK12330 147 TVS-P---IHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAI 222 (499)
T ss_pred ecC-C---CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHH
Confidence 653 3 468999999999999999999999999999999999999999999996 78999999999999999999999
Q ss_pred HcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHH-----------hCCCCCCCC
Q 014369 344 QMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKH-----------LGRPSGSKT 412 (426)
Q Consensus 344 ~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~-----------~g~~~~~~~ 412 (426)
++||++||+|++|||+ ++||++||+++++|+.+|+++++|+++|.+++++++++ .+...+..+
T Consensus 223 eAGad~vDtai~Glg~------~aGn~atE~vv~~L~~~g~~tgiDl~~L~~i~~~~~~vr~~y~~~~~~~~~~d~~v~~ 296 (499)
T PRK12330 223 EAGVDVVDTAISSMSL------GPGHNPTESLVEMLEGTGYTTKLDMDRLLKIRDHFKKVRPKYKEFESKTTGVETEIFK 296 (499)
T ss_pred HcCCCEEEeecccccc------cccchhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhcccccccCCCCcccc
Confidence 9999999999999999 99999999999999999999999999999998887754 245555666
Q ss_pred c-ccchhhhhhccCC
Q 014369 413 A-IALNRIAADASKI 426 (426)
Q Consensus 413 p-ivG~~vf~h~Sgi 426 (426)
+ +.|...|+|+|++
T Consensus 297 ~qiPGGm~snl~~Ql 311 (499)
T PRK12330 297 SQIPGGMLSNMESQL 311 (499)
T ss_pred CCCCCCchhhHHHHH
Confidence 6 8898888888753
No 35
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=3.3e-49 Score=411.74 Aligned_cols=271 Identities=20% Similarity=0.248 Sum_probs=235.4
Q ss_pred ccEEEeCCccccCCCCC-CCCCHHHHHHHHHHHHhCCCCeEEEecCCC----CCccccccCHHHHHHHhHh-cCCCcEEE
Q 014369 126 FVKIVEVGPRDGLQNEK-NTVPTGVKVELIRRLVSSGLPVVEATSFVS----PKWVPQLADARDVMEAVRD-LEGARLPV 199 (426)
Q Consensus 126 ~V~I~D~TLRDG~Q~~~-~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s----~~~~p~~~D~~~v~~~i~~-~~~~~l~~ 199 (426)
+|+|+|||||||+|+.+ ..|++++|++|++.|+++||+.||+|..+. -.++ ..++++.++.+++ ++++++++
T Consensus 2 ~V~I~DtTlRDG~Qs~~~~~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl--~e~p~e~l~~l~~~~~~~~l~~ 79 (467)
T PRK14041 2 KVMFVDTTLRDGHQSLIATRMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFL--NENPWERLKEIRKRLKNTKIQM 79 (467)
T ss_pred ceEEEECCCCccccCcCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccc--CCCHHHHHHHHHHhCCCCEEEE
Confidence 48999999999999985 689999999999999999999999973322 1111 1467888888874 58999999
Q ss_pred EeC--Ch-------hh-----HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEee
Q 014369 200 LTP--NL-------KG-----FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV 265 (426)
Q Consensus 200 l~~--~~-------~d-----i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~ 265 (426)
|++ |. +| +++|+++|++.|++|+++|| ++++...+++||++|+.|+++++++
T Consensus 80 l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd--------------~~n~~~~i~~ak~~G~~v~~~i~~t 145 (467)
T PRK14041 80 LLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALND--------------IRNLEKSIEVAKKHGAHVQGAISYT 145 (467)
T ss_pred EeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCH--------------HHHHHHHHHHHHHCCCEEEEEEEec
Confidence 875 32 23 68999999999999999998 3557788999999999999999998
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHc
Q 014369 266 VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM 345 (426)
Q Consensus 266 fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~a 345 (426)
|+ | +.+++++.++++.+.++|+++|+|+||+|+++|.+++++|++++++++ ++|++|+|||+|||+||+++|+++
T Consensus 146 ~~-p---~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~AN~laAiea 220 (467)
T PRK14041 146 VS-P---VHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFG-VPVEVHSHCTTGLASLAYLAAVEA 220 (467)
T ss_pred cC-C---CCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcC-CceEEEecCCCCcHHHHHHHHHHh
Confidence 75 4 568999999999999999999999999999999999999999999998 689999999999999999999999
Q ss_pred CCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhC--CCCCCCCcccchhhhhhc
Q 014369 346 GISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLG--RPSGSKTAIALNRIAADA 423 (426)
Q Consensus 346 Ga~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g--~~~~~~~pivG~~vf~h~ 423 (426)
||++||+|++|+|+ |+||++||+++++|+.+|+++++|+++|.+++++++++.. .+.++...-+-.+++.|+
T Consensus 221 Gad~vD~sv~~~g~------gagN~atE~lv~~L~~~g~~tgiDl~~L~~~~~~~~~vr~~y~~~~~~~~~~~~~v~~~q 294 (467)
T PRK14041 221 GADMFDTAISPFSM------GTSQPPFESMYYAFRENGKETDFDRKALKFLVEYFTKVREKYSEYDVGMKSPDSRILVSQ 294 (467)
T ss_pred CCCEEEeeccccCC------CCCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcCeeeCC
Confidence 99999999999999 9999999999999999999999999999999999987642 234444444445666664
No 36
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=100.00 E-value=1.4e-49 Score=381.24 Aligned_cols=232 Identities=30% Similarity=0.438 Sum_probs=201.8
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC-ChhhHHHHH--
Q 014369 135 RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP-NLKGFEAAI-- 211 (426)
Q Consensus 135 RDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-~~~di~~a~-- 211 (426)
|||+|+.++.|++++|++|++.|+++||++||+|++...+ .+.+.+.+..+..++.++.++++ +.++++.++
T Consensus 1 RDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 75 (237)
T PF00682_consen 1 RDGEQSNGVAFSTEEKLEIAKALDEAGVDYIEVGFPFASE-----DDFEQVRRLREALPNARLQALCRANEEDIERAVEA 75 (237)
T ss_dssp THHHHHCSTT--HHHHHHHHHHHHHHTTSEEEEEHCTSSH-----HHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHH
T ss_pred CCcCcCCCCCcCHHHHHHHHHHHHHhCCCEEEEcccccCH-----HHHHHhhhhhhhhcccccceeeeehHHHHHHHHHh
Confidence 9999999999999999999999999999999999654321 22334444444566789999886 456666655
Q ss_pred --HcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369 212 --AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (426)
Q Consensus 212 --~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~ 289 (426)
++|++.|++++++||.|.+.+++++.+++++++.+++++||++|+.|. |++++.++++++++.++++++.++
T Consensus 76 ~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~------~~~~~~~~~~~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 76 AKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVA------FGCEDASRTDPEELLELAEALAEA 149 (237)
T ss_dssp HHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEE------EEETTTGGSSHHHHHHHHHHHHHH
T ss_pred hHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceE------eCccccccccHHHHHHHHHHHHHc
Confidence 499999999999999999999999999999999999999999999995 667888999999999999999999
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCc
Q 014369 290 GCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGN 369 (426)
Q Consensus 290 Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGN 369 (426)
|+++|+|+||+|.++|.+++++++.+++++|..+|++|+|||+|||+||+++|+++||++||+|+.|||+ |+||
T Consensus 150 g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~------~~Gn 223 (237)
T PF00682_consen 150 GADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGE------RAGN 223 (237)
T ss_dssp T-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSS------TTSB
T ss_pred CCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCC------CCCC
Confidence 9999999999999999999999999999999779999999999999999999999999999999999999 9999
Q ss_pred ccHHHHHHHHHhCC
Q 014369 370 VATEDVVYMLSGLG 383 (426)
Q Consensus 370 a~lEevv~~L~~lG 383 (426)
++||+++.+|+.+|
T Consensus 224 ~~le~lv~~L~~~g 237 (237)
T PF00682_consen 224 APLEELVAALERMG 237 (237)
T ss_dssp -BHHHHHHHHHHT-
T ss_pred ccHHHHHHHHhhcC
Confidence 99999999999876
No 37
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=100.00 E-value=1.7e-47 Score=409.92 Aligned_cols=272 Identities=24% Similarity=0.295 Sum_probs=242.9
Q ss_pred CccEEEeCCccccCCCCC-CCCCHHHHHHHHHHHHhCCCCeEEEe----cCCCCCccccccCHHHHHHHhHh-cCCCcEE
Q 014369 125 RFVKIVEVGPRDGLQNEK-NTVPTGVKVELIRRLVSSGLPVVEAT----SFVSPKWVPQLADARDVMEAVRD-LEGARLP 198 (426)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~~-~~f~~~~ki~I~~~L~~~Gv~~IEvG----~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~ 198 (426)
++|.|+|||||||+|+.+ ..|++++|++|++.|+++|++.||+| |.++..++ ..|+++.++.+++ +++++++
T Consensus 2 ~~v~i~DtTlRDG~Qs~~atr~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl--~edp~e~l~~l~~~~~~~~l~ 79 (592)
T PRK09282 2 KKVKITDTTLRDAHQSLLATRMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYL--NEDPWERLRKLKKALPNTPLQ 79 (592)
T ss_pred CccEEEECCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccC--CccHHHHHHHHHHhCCCCEEE
Confidence 459999999999999996 58999999999999999999999998 32322221 1477888888874 5899999
Q ss_pred EEeC--Ch------------hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Q 014369 199 VLTP--NL------------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC 264 (426)
Q Consensus 199 ~l~~--~~------------~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~ 264 (426)
+|+| |. .++++|+++|++.|++|.++||. +++...+++||++|+.+++++++
T Consensus 80 ~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~ 145 (592)
T PRK09282 80 MLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDV--------------RNMEVAIKAAKKAGAHVQGTISY 145 (592)
T ss_pred EEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChH--------------HHHHHHHHHHHHcCCEEEEEEEe
Confidence 9975 33 35889999999999999999994 46778889999999999999998
Q ss_pred eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHH
Q 014369 265 VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 344 (426)
Q Consensus 265 ~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~ 344 (426)
+++ | ..+++++.++++.+.++|+++|+|+||+|.++|.++++++++++++++ .+|++|+|||+|||+||+++|++
T Consensus 146 t~~-p---~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAv~ 220 (592)
T PRK09282 146 TTS-P---VHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVD-LPVQLHSHCTSGLAPMTYLKAVE 220 (592)
T ss_pred ccC-C---CCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCC-CeEEEEEcCCCCcHHHHHHHHHH
Confidence 774 4 468999999999999999999999999999999999999999999998 58999999999999999999999
Q ss_pred cCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCC--CCCCCCcccchhhhhh
Q 014369 345 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGR--PSGSKTAIALNRIAAD 422 (426)
Q Consensus 345 aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~--~~~~~~pivG~~vf~h 422 (426)
+||++||+|++|+|+ |+||++||+++.+|+..|+++++|+++|.+++++++++... ++++..+..+.++|.|
T Consensus 221 aGad~vD~ai~g~g~------~agn~~~e~vv~~L~~~g~~~~idl~~l~~~s~~~~~~~~~y~~~~~~~~~~~~~v~~~ 294 (592)
T PRK09282 221 AGVDIIDTAISPLAF------GTSQPPTESMVAALKGTPYDTGLDLELLFEIAEYFREVRKKYKQFESEFTIVDTRVLIH 294 (592)
T ss_pred hCCCEEEeeccccCC------CcCCHhHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHhhcCCCccccCCccEEEE
Confidence 999999999999999 99999999999999999999999999999999999998743 3778888889999988
Q ss_pred c
Q 014369 423 A 423 (426)
Q Consensus 423 ~ 423 (426)
+
T Consensus 295 ~ 295 (592)
T PRK09282 295 Q 295 (592)
T ss_pred c
Confidence 6
No 38
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=3.8e-47 Score=406.68 Aligned_cols=257 Identities=20% Similarity=0.263 Sum_probs=229.1
Q ss_pred CCCccEEEeCCccccCCCC-CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCC-ccccc-cCHHHHHHHhH-hcCCCcEE
Q 014369 123 IPRFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPK-WVPQL-ADARDVMEAVR-DLEGARLP 198 (426)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~-~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~-~~p~~-~D~~~v~~~i~-~~~~~~l~ 198 (426)
|+++|+|+|||||||+|+. +..|++++++.|++.|+++|++.||+|..+.-+ .+|.+ .|+++.++.++ .+++++++
T Consensus 1 m~k~v~i~DtTLRDG~Qs~~~tr~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lq 80 (593)
T PRK14040 1 MSKPLAITDVVLRDAHQSLFATRLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQ 80 (593)
T ss_pred CCCccEEEECCcccccccccccccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEE
Confidence 4678999999999999999 569999999999999999999999996322211 02222 57888888887 57899999
Q ss_pred EEeCC--------------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Q 014369 199 VLTPN--------------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC 264 (426)
Q Consensus 199 ~l~~~--------------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~ 264 (426)
+|+|. ..+++.|+++|++.||||.++|+ ++++...+++||++|..++++|++
T Consensus 81 ml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd--------------~~~~~~ai~~ak~~G~~~~~~i~y 146 (593)
T PRK14040 81 MLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMND--------------PRNLETALKAVRKVGAHAQGTLSY 146 (593)
T ss_pred EEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCc--------------HHHHHHHHHHHHHcCCeEEEEEEE
Confidence 98872 13588999999999999999988 356788999999999999999988
Q ss_pred eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHH
Q 014369 265 VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 344 (426)
Q Consensus 265 ~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~ 344 (426)
.++ | ..+++++.++++.+.++|+++|+|+||+|.++|.+++++|+++++++. ++|++|+|||+|||+||+++|++
T Consensus 147 t~~-p---~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~GlA~An~laAie 221 (593)
T PRK14040 147 TTS-P---VHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVD-VPLHLHCHATTGLSTATLLKAIE 221 (593)
T ss_pred eeC-C---ccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCchHHHHHHHHHH
Confidence 753 3 357999999999999999999999999999999999999999999985 58999999999999999999999
Q ss_pred cCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHh
Q 014369 345 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL 404 (426)
Q Consensus 345 aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~ 404 (426)
+||++||+|++|||+ |+||++||+++++|+.+|+++++|+.+|.++++++.++.
T Consensus 222 AGa~~vD~ai~glG~------~~Gn~~le~vv~~L~~~~~~~gidl~~l~~is~~~~~v~ 275 (593)
T PRK14040 222 AGIDGVDTAISSMSM------TYGHSATETLVATLEGTERDTGLDILKLEEIAAYFREVR 275 (593)
T ss_pred cCCCEEEeccccccc------cccchhHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999875
No 39
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=100.00 E-value=4e-47 Score=406.08 Aligned_cols=249 Identities=22% Similarity=0.302 Sum_probs=223.9
Q ss_pred EEeCCccccCCCCC-CCCCHHHHHHHHHHHHhCCCCeEEEec----CCCCCccccccCHHHHHHHhHh-cCCCcEEEEeC
Q 014369 129 IVEVGPRDGLQNEK-NTVPTGVKVELIRRLVSSGLPVVEATS----FVSPKWVPQLADARDVMEAVRD-LEGARLPVLTP 202 (426)
Q Consensus 129 I~D~TLRDG~Q~~~-~~f~~~~ki~I~~~L~~~Gv~~IEvG~----~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~ 202 (426)
|+|||||||+|+.+ ..|++++|++|++.|+++|++.||+|. .+.-.++ ..|+++.++.+++ .+++++++|+|
T Consensus 1 I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~--~e~~~e~l~~l~~~~~~~~l~~L~R 78 (582)
T TIGR01108 1 ITDVVLRDAHQSLFATRMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFL--NEDPWERLRELKKALPNTPLQMLLR 78 (582)
T ss_pred CccCCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccC--CCCHHHHHHHHHHhCCCCEEEEEEc
Confidence 58999999999985 589999999999999999999999982 2211111 1468899998875 78999999975
Q ss_pred --Ch------------hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC
Q 014369 203 --NL------------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC 268 (426)
Q Consensus 203 --~~------------~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~ 268 (426)
|. .++++|+++|++.|++|.++||. +++...+++||++|+.+++++++++ +
T Consensus 79 g~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~-~ 143 (582)
T TIGR01108 79 GQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGAHAQGTISYTT-S 143 (582)
T ss_pred cccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCEEEEEEEecc-C
Confidence 32 35689999999999999999984 4577888999999999999998876 5
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCC
Q 014369 269 PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS 348 (426)
Q Consensus 269 pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~ 348 (426)
| +.+++++.++++++.++|+++|+|+||+|.++|.+++++++++++.++ .+|++|+|||+|||+||+++|+++||+
T Consensus 144 p---~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAveaGa~ 219 (582)
T TIGR01108 144 P---VHTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAEMALLKAIEAGAD 219 (582)
T ss_pred C---CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHHHHHHHHHHhCCC
Confidence 5 368999999999999999999999999999999999999999999998 589999999999999999999999999
Q ss_pred EEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHh
Q 014369 349 TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL 404 (426)
Q Consensus 349 ~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~ 404 (426)
+||+|++|||+ |+||++||+++.+|+.+|+++++|+++|.+++++++++.
T Consensus 220 ~vd~ai~GlG~------~tGn~~le~vv~~L~~~g~~tgid~~~L~~l~~~~~~v~ 269 (582)
T TIGR01108 220 GIDTAISSMSG------GTSHPPTETMVAALRGTGYDTGLDIELLLEIAAYFREVR 269 (582)
T ss_pred EEEeccccccc------cccChhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999999999999999865
No 40
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=1.3e-45 Score=383.20 Aligned_cols=276 Identities=19% Similarity=0.207 Sum_probs=236.3
Q ss_pred CCCccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc-cc-cccCHHHHHHHhH-hcCCCcEE
Q 014369 123 IPRFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSSGLPVVEATSFVSPKW-VP-QLADARDVMEAVR-DLEGARLP 198 (426)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~~-~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~-~p-~~~D~~~v~~~i~-~~~~~~l~ 198 (426)
|.++|+|+|||||||.|+... .|++++.+.|++.|+++|++.||+|..+.-+. +. ...|+|+.++.++ .+|+++++
T Consensus 9 ~~~~v~i~DtTlRDg~QSl~atr~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lq 88 (468)
T PRK12581 9 MQQQVAITETVLRDGHQSLMATRLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQ 88 (468)
T ss_pred cCCceEEEECCccchhhhccccCCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCcee
Confidence 557899999999999999654 79999999999999999999999974332210 00 1268899999998 68999999
Q ss_pred EEeCC--h-------hh-----HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Q 014369 199 VLTPN--L-------KG-----FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC 264 (426)
Q Consensus 199 ~l~~~--~-------~d-----i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~ 264 (426)
+|+|. . .| ++.|.+.|++.+|+|.+.++ ++.++..++.+|++|..+++.+++
T Consensus 89 mLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd--------------~~n~~~ai~~ak~~G~~~~~~i~y 154 (468)
T PRK12581 89 MLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALND--------------PRNIQQALRAVKKTGKEAQLCIAY 154 (468)
T ss_pred eeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCC--------------HHHHHHHHHHHHHcCCEEEEEEEE
Confidence 99873 1 24 78899999999999999887 566788999999999999999998
Q ss_pred eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHH
Q 014369 265 VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 344 (426)
Q Consensus 265 ~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~ 344 (426)
.. .| ..+.+++.++++.+.++|+++|+|+||+|.++|.+++++|+++++. ++++|++|+|||+|||+||+++|++
T Consensus 155 t~-sp---~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~-~~~pi~~H~Hnt~GlA~An~laAie 229 (468)
T PRK12581 155 TT-SP---VHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAM-TNLPLIVHTHATSGISQMTYLAAVE 229 (468)
T ss_pred Ee-CC---cCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhc-cCCeEEEEeCCCCccHHHHHHHHHH
Confidence 76 34 4578999999999999999999999999999999999999999884 5578999999999999999999999
Q ss_pred cCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCC-----CCCCcccchhh
Q 014369 345 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPS-----GSKTAIALNRI 419 (426)
Q Consensus 345 aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~-----~~~~pivG~~v 419 (426)
+||++||+|++|+|+ ++||++||+++++|+..|+++++|+++|.+++++++++...-. .+....+-.++
T Consensus 230 AGad~vD~ai~g~g~------gagN~~tE~lv~~L~~~g~~tgiDl~~L~~~a~~~~~vr~~y~~~~~~~~~~~~~d~~v 303 (468)
T PRK12581 230 AGADRIDTALSPFSE------GTSQPATESMYLALKEAGYDITLDETLLEQAANHLRQARQKYLADGILDPSLLFPDPRT 303 (468)
T ss_pred cCCCEEEeeccccCC------CcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcccccCCCccCCCCcce
Confidence 999999999999999 9999999999999999999999999999999999988754322 22223334556
Q ss_pred hhhc
Q 014369 420 AADA 423 (426)
Q Consensus 420 f~h~ 423 (426)
+.|+
T Consensus 304 ~~hq 307 (468)
T PRK12581 304 LQYQ 307 (468)
T ss_pred eeCC
Confidence 6654
No 41
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=100.00 E-value=2.5e-44 Score=383.92 Aligned_cols=274 Identities=19% Similarity=0.228 Sum_probs=236.7
Q ss_pred CccEEEeCCccccCCCC-CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc-cc-cccCHHHHHHHhH-hcCCCcEEEE
Q 014369 125 RFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKW-VP-QLADARDVMEAVR-DLEGARLPVL 200 (426)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~-~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~-~p-~~~D~~~v~~~i~-~~~~~~l~~l 200 (426)
++|.|+|||||||.|+. ..+|++++.+.|++.|+++|+..||+|..+.-+. +. ...|+|+.++.++ .+|++++++|
T Consensus 2 ~~~~i~DttlRDg~QSl~atr~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL 81 (596)
T PRK14042 2 SKTFITDVTLRDAHQCLIATRMRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSML 81 (596)
T ss_pred CceEEEECCcchhhhhhhhcCCCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEE
Confidence 46999999999999965 4589999999999999999999999985443211 11 1268999999998 6799999999
Q ss_pred eC--Ch------------hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeee
Q 014369 201 TP--NL------------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV 266 (426)
Q Consensus 201 ~~--~~------------~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~f 266 (426)
.| |. ..++.|.++|++.+|+|.+.++ ++.++..++.+|+.|..++++||++.
T Consensus 82 ~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd--------------~~n~~~~i~~~k~~G~~~~~~i~yt~ 147 (596)
T PRK14042 82 LRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALND--------------ARNLKVAIDAIKSHKKHAQGAICYTT 147 (596)
T ss_pred eccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcc--------------hHHHHHHHHHHHHcCCEEEEEEEecC
Confidence 85 31 2578899999999999999988 46677889999999999999999864
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC
Q 014369 267 GCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG 346 (426)
Q Consensus 267 g~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG 346 (426)
+| ..+++++.++++.+.++|+++|+|+||+|.++|.++++++++++++++ ++|++|+|||+|||+||+++|+++|
T Consensus 148 -sp---~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~-ipi~~H~Hnt~Gla~an~laAieaG 222 (596)
T PRK14042 148 -SP---VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATG-LPVHLHSHSTSGLASICHYEAVLAG 222 (596)
T ss_pred -CC---CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcC-CEEEEEeCCCCCcHHHHHHHHHHhC
Confidence 34 468999999999999999999999999999999999999999999987 6899999999999999999999999
Q ss_pred CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCC--CCCCCCcccchhhhhhc
Q 014369 347 ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGR--PSGSKTAIALNRIAADA 423 (426)
Q Consensus 347 a~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~--~~~~~~pivG~~vf~h~ 423 (426)
|++||+|++|||+ ++||++||+++++|+.+|+++++|+++|.++++++.++... +.++...-+-.++|.|+
T Consensus 223 ad~iD~ai~glGg------~tGn~~tE~lv~~L~~~g~~tgidl~~l~~~~~~~~~vr~~y~~~~~~~~~~~~~v~~hq 295 (596)
T PRK14042 223 CNHIDTAISSFSG------GASHPPTEALVAALTDTPYDTELDLNILLEIDDYFKAVRKKYSQFESEAQNIDPRVQLYQ 295 (596)
T ss_pred CCEEEeccccccC------CCCcHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCccccCCcceeecC
Confidence 9999999999999 89999999999999999999999999999999999886521 23333333345666664
No 42
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=1.1e-43 Score=403.78 Aligned_cols=287 Identities=18% Similarity=0.165 Sum_probs=241.5
Q ss_pred hHHHHhhcCCCCccEEEeCCccccCCCC-CCCCCHHHHHHHHHHHHhC--CCCeEEEecCCCCCc-cccc-cCHHHHHHH
Q 014369 114 DITNKFLKGIPRFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSS--GLPVVEATSFVSPKW-VPQL-ADARDVMEA 188 (426)
Q Consensus 114 ~~~~~~~~~~p~~V~I~D~TLRDG~Q~~-~~~f~~~~ki~I~~~L~~~--Gv~~IEvG~~~s~~~-~p~~-~D~~~v~~~ 188 (426)
+++..++ -.++|.|+|||||||+|++ +..|++++++.|++.|+++ |++.||+|+.+.-+. ++.+ .|+|+.++.
T Consensus 522 ~~~~~~~--~~~~v~i~DtTlRDg~Qs~~atr~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~ 599 (1146)
T PRK12999 522 GFADWLR--DQKRVLLTDTTFRDAHQSLLATRVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAE 599 (1146)
T ss_pred HHHHHHh--ccCCcEEEECCcchhhhccccccCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHH
Confidence 3444443 4567999999999999998 5899999999999999999 999999997432211 1222 688999999
Q ss_pred hH-hcCCCcEEEEeCC-------------hh-hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 014369 189 VR-DLEGARLPVLTPN-------------LK-GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV 253 (426)
Q Consensus 189 i~-~~~~~~l~~l~~~-------------~~-di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~ 253 (426)
++ .+|++.+++|+|. .+ .++.|+++|++.||||.+.++ +++++..++.+|+
T Consensus 600 ~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd--------------~~~~~~~i~~vk~ 665 (1146)
T PRK12999 600 LREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNW--------------VENMRVAIDAVRE 665 (1146)
T ss_pred HHHhCCCCeEEEEecccccccccCCCchHHHHHHHHHHHcCCCEEEEeccCCh--------------HHHHHHHHHHHHH
Confidence 98 5799999999973 12 488999999999999999888 4557788899999
Q ss_pred cCCcEEEEEEeeecCCCCCC--CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCC
Q 014369 254 LSIPVRGYVSCVVGCPVEGA--IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDT 331 (426)
Q Consensus 254 ~G~~v~~~v~~~fg~pd~~r--~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd 331 (426)
.|..+++.++++-.-.|.++ ++++++.++++.+.++|+++|+|+||+|+++|.+++++|++++++++ ++|++|+|||
T Consensus 666 ~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~-ipi~~H~Hnt 744 (1146)
T PRK12999 666 TGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEVD-LPIHLHTHDT 744 (1146)
T ss_pred cCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHcC-CeEEEEeCCC
Confidence 99988888887611123334 79999999999999999999999999999999999999999999985 5899999999
Q ss_pred cCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCC--CC
Q 014369 332 YGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRP--SG 409 (426)
Q Consensus 332 ~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~--~~ 409 (426)
+|||+||+++|+++||++||+|++|||+ ++||++||+++++|+..|+++++|+++|.+++++++++...- .+
T Consensus 745 ~Gla~an~laA~~aGad~vD~av~glg~------~tgn~~le~vv~~L~~~~~~t~idl~~l~~~s~~~~~~r~~y~~~~ 818 (1146)
T PRK12999 745 SGNGLATYLAAAEAGVDIVDVAVASMSG------LTSQPSLNSIVAALEGTERDTGLDLDAIRKLSPYWEAVRPYYAPFE 818 (1146)
T ss_pred CchHHHHHHHHHHhCCCEEEecchhhcC------CcCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHhHhhccC
Confidence 9999999999999999999999999999 999999999999999999999999999999999999876432 33
Q ss_pred CCCcccchhhhhhc
Q 014369 410 SKTAIALNRIAADA 423 (426)
Q Consensus 410 ~~~pivG~~vf~h~ 423 (426)
+...-.-.+++.|+
T Consensus 819 ~~~~~~~~~v~~~~ 832 (1146)
T PRK12999 819 SGLKSPTTEVYLHE 832 (1146)
T ss_pred CCCCCCCcCeEEec
Confidence 33322234466665
No 43
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=100.00 E-value=1.7e-42 Score=348.48 Aligned_cols=280 Identities=19% Similarity=0.222 Sum_probs=251.4
Q ss_pred EEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCC-hhhH
Q 014369 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPN-LKGF 207 (426)
Q Consensus 129 I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~-~~di 207 (426)
|+|||||||.|..+..|++++|+++++.|+++|++.||+|+|.. .|+..+..+++...+ ....+.+++++ .+++
T Consensus 1 i~D~TlRDG~q~~~~~~~~~~ki~i~~~l~~~Gv~~iE~g~p~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 75 (344)
T TIGR02146 1 IIDSTLREGEQFPGANFSTEQKIEIAKALDEFGIDYIEVTHPAA---SKQSRIDIEIIASLG--LKANIVTHIRCRLDDA 75 (344)
T ss_pred CCCCCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC---CHHHHHHHHHHHhcC--CCcEEEEECCCCHHHH
Confidence 58999999999999999999999999999999999999999653 233323323332222 23456778886 7899
Q ss_pred HHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369 208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH 287 (426)
Q Consensus 208 ~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~ 287 (426)
+.+.+++++.++++.+.|+.|+..+++++.++.++.+...+++|++.|+.+..+++ ++.+.+++++.++++.+.
T Consensus 76 ~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~~~~~~~~------~~~~~~~~~~~~~~d~~~ 149 (344)
T TIGR02146 76 KVAVELGVDGIDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKSAGLEVRFSAE------DTFRSELADLLSIYETVG 149 (344)
T ss_pred HHHHHCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEe------eCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998886665 345788999999999999
Q ss_pred hCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCC
Q 014369 288 DMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGAS 367 (426)
Q Consensus 288 ~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~gra 367 (426)
++|++.|+++||.|.++|.++..++..+++..+.+++++|+|||+|+|+||+++|+.+||+++|+|++|||+ ++
T Consensus 150 ~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H~Hn~~g~avant~~al~~ga~~~d~s~~glG~------~~ 223 (344)
T TIGR02146 150 VFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNAIEGGATIVDTTVLGIGE------RN 223 (344)
T ss_pred HCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHHHHcCCCEEEEEeeeeeC------CC
Confidence 999999999999999999999999999999888789999999999999999999999999999999999999 89
Q ss_pred CcccHHHHHHHHHhC-CCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369 368 GNVATEDVVYMLSGL-GVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI 426 (426)
Q Consensus 368 GNa~lEevv~~L~~l-G~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi 426 (426)
||+++|.++..|..+ |+. .+|++++.++++.+....+.++++++|++|.++|.|+|||
T Consensus 224 G~~~l~~~~~~L~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~g~ 282 (344)
T TIGR02146 224 GITPLGGILARLYYHTPMY-VYKLGKLIELTRMVAGEVGVTIPFNNPITGELAFTHKAGI 282 (344)
T ss_pred CCccHHHHHHHHHHhcCCC-ccCHHHHHHHHHHHHHHhCCCCCCCCCeeCcchhhcccch
Confidence 999999999988874 554 4899999999999999999999999999999999999986
No 44
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=2e-39 Score=367.77 Aligned_cols=280 Identities=16% Similarity=0.148 Sum_probs=238.0
Q ss_pred CCCccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHhC--CCCeEEEecCCCCCc-ccc-ccCHHHHHHHhH-hcCCCc
Q 014369 123 IPRFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSS--GLPVVEATSFVSPKW-VPQ-LADARDVMEAVR-DLEGAR 196 (426)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~~-~f~~~~ki~I~~~L~~~--Gv~~IEvG~~~s~~~-~p~-~~D~~~v~~~i~-~~~~~~ 196 (426)
-.++|.|+|||+|||.|+... ++.+++.+.|++.++++ |+..+|++..+.-+. +.- .+|+|+.++.+| .+|++.
T Consensus 527 ~~~~~~~tdtt~RD~hQSl~atr~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~~ 606 (1143)
T TIGR01235 527 NQKRVLLTDTTFRDAHQSLLATRVRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNIL 606 (1143)
T ss_pred hcCCeeEEECcccchhhhhhhhCCCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCCc
Confidence 346699999999999999966 79999999999999995 999999985443211 011 168999999998 689999
Q ss_pred EEEEeC--Ch------------hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEE
Q 014369 197 LPVLTP--NL------------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV 262 (426)
Q Consensus 197 l~~l~~--~~------------~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v 262 (426)
+++|.| |. .-++.+++.|+|.+|+|.+.++ +++++..++.+|+.|..++++|
T Consensus 607 ~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN~--------------~~n~~~~~~~~~~~g~~~~~~i 672 (1143)
T TIGR01235 607 FQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLNW--------------VENMRVGMDAVAEAGKVVEAAI 672 (1143)
T ss_pred eeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccCcC--------------HHHHHHHHHHHHHcCCEEEEEE
Confidence 999987 32 2367889999999999999988 5778899999999999999999
Q ss_pred EeeecC--CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHH
Q 014369 263 SCVVGC--PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNIL 340 (426)
Q Consensus 263 ~~~fg~--pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaL 340 (426)
|++-.. |....++.+++.++++.+.++|+++|+|+||+|+++|.++++++++|++++. .+|++|+|||+|||+||++
T Consensus 673 ~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~-~pi~~H~Hdt~Gla~an~l 751 (1143)
T TIGR01235 673 CYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKTD-LPIHFHTHDTSGIAVASML 751 (1143)
T ss_pred EEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCCcHHHHHH
Confidence 986211 2222468999999999999999999999999999999999999999999985 6899999999999999999
Q ss_pred HHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhC--CCCCCCCcccchh
Q 014369 341 ISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLG--RPSGSKTAIALNR 418 (426)
Q Consensus 341 aAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g--~~~~~~~pivG~~ 418 (426)
+|+++||++||+|++|||+ .++++++|.++++|+..|+++++|+++|.+++++++++-. .+.++...-.-.+
T Consensus 752 aA~eaGad~vD~ai~gl~G------~ts~p~~e~~v~~L~~~~~~tgidl~~l~~is~~~~~vr~~y~~~~~~~~~~~~~ 825 (1143)
T TIGR01235 752 AAVEAGVDVVDVAVDSMSG------LTSQPSLGAIVAALEGSERDPGLNVAWIRELSAYWEAVRNLYAAFESDLKGPASE 825 (1143)
T ss_pred HHHHhCCCEEEecchhhcC------CCCCHhHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCcCCCcC
Confidence 9999999999999999999 8999999999999999999999999999999999998642 2333333222346
Q ss_pred hhhhc
Q 014369 419 IAADA 423 (426)
Q Consensus 419 vf~h~ 423 (426)
||.|+
T Consensus 826 v~~~~ 830 (1143)
T TIGR01235 826 VYLHE 830 (1143)
T ss_pred eEEec
Confidence 66664
No 45
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=100.00 E-value=4.3e-39 Score=321.84 Aligned_cols=255 Identities=24% Similarity=0.301 Sum_probs=226.6
Q ss_pred CCccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcc-cc-ccCHHHHHHHhH-hcCCCcEEE
Q 014369 124 PRFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWV-PQ-LADARDVMEAVR-DLEGARLPV 199 (426)
Q Consensus 124 p~~V~I~D~TLRDG~Q~~~~-~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~-p~-~~D~~~v~~~i~-~~~~~~l~~ 199 (426)
.++|+|+|++||||.|+.-. ++.+++.+.|++.|++.|+..+|+|-.+.-+.. .- ..|+|+.++.++ .++++++++
T Consensus 3 ~k~i~itdt~lRDghQSl~ATRmrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQM 82 (472)
T COG5016 3 MKKIKITDTVLRDGHQSLLATRMRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQM 82 (472)
T ss_pred cceeeeEeeeechHHHHHHHHHHhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHH
Confidence 46799999999999999854 799999999999999999999999854321110 00 168999999998 579999999
Q ss_pred EeC--Chh------------hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEee
Q 014369 200 LTP--NLK------------GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV 265 (426)
Q Consensus 200 l~~--~~~------------di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~ 265 (426)
|.| |+. -++++.+.|+|.+|||...+|. .++..+++.+|++|..+++.+|+.
T Consensus 83 LlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~--------------RNl~~ai~a~kk~G~h~q~~i~YT 148 (472)
T COG5016 83 LLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDV--------------RNLKTAIKAAKKHGAHVQGTISYT 148 (472)
T ss_pred HHccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccch--------------hHHHHHHHHHHhcCceeEEEEEec
Confidence 886 432 3578899999999999999884 556788899999999999999997
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHc
Q 014369 266 VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM 345 (426)
Q Consensus 266 fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~a 345 (426)
. +|.+ +.+++.++++++.++|+|.|+|+|+.|+++|...+++|+.+++.++ ++|.+|+|.|-|||.++.++|++|
T Consensus 149 ~-sPvH---t~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~-~pv~lHtH~TsG~a~m~ylkAvEA 223 (472)
T COG5016 149 T-SPVH---TLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELP-VPVELHTHATSGMAEMTYLKAVEA 223 (472)
T ss_pred c-CCcc---cHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcC-CeeEEecccccchHHHHHHHHHHh
Confidence 5 4654 5799999999999999999999999999999999999999999999 589999999999999999999999
Q ss_pred CCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHH
Q 014369 346 GISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKH 403 (426)
Q Consensus 346 Ga~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~ 403 (426)
|||+||+++..+.+ +++++++|.++++|+..++++++|++.|.++++++.++
T Consensus 224 GvD~iDTAisp~S~------gtsqP~tEtmv~aL~gt~yDtgld~~~l~~~~~yf~~v 275 (472)
T COG5016 224 GVDGIDTAISPLSG------GTSQPATETMVAALRGTGYDTGLDLELLEEIAEYFREV 275 (472)
T ss_pred CcchhhhhhccccC------CCCCCcHHHHHHHhcCCCCCccccHHHHHHHHHHHHHH
Confidence 99999999998888 79999999999999999999999999999999998754
No 46
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.95 E-value=4.8e-27 Score=249.52 Aligned_cols=260 Identities=18% Similarity=0.221 Sum_probs=222.1
Q ss_pred CCCccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHhC--CCCeEEEecC----CCCCccccccCHHHHHHHhH-hcCC
Q 014369 123 IPRFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSS--GLPVVEATSF----VSPKWVPQLADARDVMEAVR-DLEG 194 (426)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~~-~f~~~~ki~I~~~L~~~--Gv~~IEvG~~----~s~~~~p~~~D~~~v~~~i~-~~~~ 194 (426)
-.+.+-+.|||+||+.|+.=. ++.+.+...||...+.+ ....+|.+-. ++..++ ..|+|+.++.+| .+|+
T Consensus 532 ~q~~vlltDTT~RDaHQSLLATRvRt~dl~~IA~~~a~~lp~lfSlE~WGGATfDVamRFL--~EdPWeRL~~lRk~~PN 609 (1149)
T COG1038 532 EQKAVLLTDTTFRDAHQSLLATRVRTHDLARIAPATARALPQLFSLEMWGGATFDVAMRFL--KEDPWERLERLRKAVPN 609 (1149)
T ss_pred hccceeeeecchhhHHHHHHHHHHhhhhhhhhhHHHHHhhhhhhchhhhCCchHHHHHHHh--ccCHHHHHHHHHHhCCc
Confidence 456799999999999999744 57777778898888776 6778888633 332222 268999999998 6899
Q ss_pred CcEEEEeC--C------------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEE
Q 014369 195 ARLPVLTP--N------------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG 260 (426)
Q Consensus 195 ~~l~~l~~--~------------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~ 260 (426)
+.++||.| | ..-++.|...|+|.+|||.+++. ++.++-.++.+++.|.-+++
T Consensus 610 vlfQMLLRgaN~VgY~nyPDnVi~~Fvkqaa~~GIDvFRiFDsLNw--------------v~~M~vaidAV~e~gkv~Ea 675 (1149)
T COG1038 610 VLFQMLLRGANGVGYKNYPDNVIREFVKQAAKSGIDVFRIFDSLNW--------------VEQMRVAIDAVREAGKVAEA 675 (1149)
T ss_pred hHHHHHhccccccCcCCCchHHHHHHHHHHHhcCccEEEeehhhcc--------------hhhhhhHHHHHHhcCCeEEE
Confidence 99999875 2 12368889999999999998766 57778889999999988899
Q ss_pred EEEeeecC--CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHH
Q 014369 261 YVSCVVGC--PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPN 338 (426)
Q Consensus 261 ~v~~~fg~--pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~AN 338 (426)
++|+.-.. |....++.+|+.++++.+.++|++++.|+|++|++.|...+.||.+||+.+ ++||.+|.||+-|.++|.
T Consensus 676 tiCYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~-dlPIHlHTHDTsG~~~at 754 (1149)
T COG1038 676 TICYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV-DLPIHLHTHDTSGNGVAT 754 (1149)
T ss_pred EEEeccccCCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc-CCceEEeccCCCccHHHH
Confidence 99986322 222346889999999999999999999999999999999999999999998 468999999999999999
Q ss_pred HHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhC
Q 014369 339 ILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLG 405 (426)
Q Consensus 339 aLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g 405 (426)
.++|++||+|+||+++..|.+ -+.++++-.++++|.....++++|.+.+.+++.+.+.+-.
T Consensus 755 ~~aA~~AGvDivD~A~~smsG------~TSQPsl~si~~al~~~~r~~~ld~~~~~~i~~YWe~vR~ 815 (1149)
T COG1038 755 YLAAVEAGVDIVDVAMASMSG------LTSQPSLNSIVAALAGTERDTGLDIEAVRELSFYWEAVRK 815 (1149)
T ss_pred HHHHHHcCCchhhhhhhhccC------CCCCccHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 8999999999999998888899999999999999987643
No 47
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=99.91 E-value=1.4e-23 Score=219.66 Aligned_cols=285 Identities=18% Similarity=0.158 Sum_probs=227.8
Q ss_pred HHHHhhcCCCCccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHh--CCCCeEEEecC----CCCCccccccCHHHHHH
Q 014369 115 ITNKFLKGIPRFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVS--SGLPVVEATSF----VSPKWVPQLADARDVME 187 (426)
Q Consensus 115 ~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~-~f~~~~ki~I~~~L~~--~Gv~~IEvG~~----~s~~~~p~~~D~~~v~~ 187 (426)
|+.++| +. +..-|+|+|+||..|+.-. ++.+.+-..|+..-.. +|...+|.+-. ++..++ ..++|+.++
T Consensus 550 FAk~VR-n~-~g~llmDTT~RDAHQSLLATRVRthDl~~IaPyvah~f~~lfslE~WGGATFDVamRFL--hEcPWeRL~ 625 (1176)
T KOG0369|consen 550 FAKAVR-NH-PGLLLMDTTFRDAHQSLLATRVRTHDLAKIAPYVAHAFAGLFSLENWGGATFDVAMRFL--HECPWERLR 625 (1176)
T ss_pred HHHHHh-cC-CCceEeechhHHHHHHHHHHHhhhhhhhhcchHHHHHhhhhhhhhhcCCchhhHHHHHH--hcChHHHHH
Confidence 444553 33 3478999999999999633 4556666667666533 58888888633 332221 157899999
Q ss_pred HhH-hcCCCcEEEEeC--Ch------------hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 014369 188 AVR-DLEGARLPVLTP--NL------------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK 252 (426)
Q Consensus 188 ~i~-~~~~~~l~~l~~--~~------------~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak 252 (426)
.+| .+|++.+++|.| |- +-.+.|.+.|+|.+|+|.++++ +.++.--++.|+
T Consensus 626 ~lRkliPNIPFQmLLRGANavgYssyPDNviykFce~Ak~nGmDiFRVFDsLN~--------------lpnl~lGmeAag 691 (1176)
T KOG0369|consen 626 ELRKLIPNIPFQMLLRGANAVGYSSYPDNVIYKFCEQAKKNGMDIFRVFDSLNY--------------LPNLLLGMEAAG 691 (1176)
T ss_pred HHHHhCCCCcHHHHhcccccccccCCChhHHHHHHHHHHhcCcceeeehhhhhh--------------hhhhhhhHhhhh
Confidence 888 579999998875 21 2247899999999999988766 455566688899
Q ss_pred hcCCcEEEEEEeeec--CCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCC
Q 014369 253 VLSIPVRGYVSCVVG--CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD 330 (426)
Q Consensus 253 ~~G~~v~~~v~~~fg--~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HN 330 (426)
+.|--|++++|+.-. .|--+.++.+|+..+++.+.++|..+++|+|+.|++.|....-||.++|+++|+++|.+|.||
T Consensus 692 kAGGVVEAai~YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~PdlPiHvHtHD 771 (1176)
T KOG0369|consen 692 KAGGVVEAAICYTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFPDLPIHVHTHD 771 (1176)
T ss_pred ccCCeEEEEEeeccccCCcccccccHHHHHHHHHHHHhccCeEEeehhhhcccCHHHHHHHHHHHHhhCCCCceEEeccC
Confidence 999999999998521 222335788999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCC--C
Q 014369 331 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRP--S 408 (426)
Q Consensus 331 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~--~ 408 (426)
+-|.|+|..+++.+||||.||+++..|.+ -+.++++-.+++.|+..-.+++++++.+.+.+.+.++.-..= .
T Consensus 772 tsGagVAsMlaca~AGADVVDvA~dSMSG------mTSQPSmgA~vAsl~Gt~~Dt~l~~~~v~eysaYWe~~R~LYapF 845 (1176)
T KOG0369|consen 772 TSGAGVASMLACALAGADVVDVAVDSMSG------MTSQPSMGALVASLQGTPLDTGLNLEHVREYSAYWEQMRLLYAPF 845 (1176)
T ss_pred CccHHHHHHHHHHHcCCceeeeecccccc------cccCCchhhhhhhccCCcccCCCchHHHHHHHHHHHHHhhhhchh
Confidence 99999999999999999999999999998 899999999999998777899999999999999999865432 2
Q ss_pred CCCCcccc--hhhhhhc
Q 014369 409 GSKTAIAL--NRIAADA 423 (426)
Q Consensus 409 ~~~~pivG--~~vf~h~ 423 (426)
...+-+-| .+||.||
T Consensus 846 e~tttmksgn~dVY~hE 862 (1176)
T KOG0369|consen 846 ECTTTMKSGNSDVYQHE 862 (1176)
T ss_pred hhcccccCCCcchhhcc
Confidence 23223322 4667776
No 48
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=98.66 E-value=5.4e-15 Score=148.92 Aligned_cols=140 Identities=13% Similarity=-0.020 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhCCCC-EEEEcCCCCCCCHHHHHHHHHHHHHhcCC---------------ceEEEEeCCCcCcHHHHHHH
Q 014369 278 KVAYVAKELHDMGCF-EISLGDTIGVGTPGTVVPMLEAVMAVVPV---------------EKLAVHLHDTYGQSLPNILI 341 (426)
Q Consensus 278 ~l~~~~~~l~~~Gad-~I~l~DT~G~~~P~~v~~li~~l~~~~p~---------------~~i~~H~HNd~GlA~ANaLa 341 (426)
.+...++.+.+.|.+ .+.+.|+. ...|..+.++.+.+...-|+ +...+|+||++|++++|++.
T Consensus 111 ~v~~~~e~a~~~g~~~~~~~~~~~-~~~~~~~~~~~d~~~~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H 189 (344)
T TIGR02146 111 SARETIEYAKSAGLEVRFSAEDTF-RSELADLLSIYETVGVFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELH 189 (344)
T ss_pred HHHHHHHHHHHCCCeEEEEEeeCC-CCCHHHHHHHHHHHHHCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 444556666667865 77788875 55688888888887653221 34778999999999999999
Q ss_pred HHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh-CCC-CCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhh
Q 014369 342 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGV-ETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRI 419 (426)
Q Consensus 342 Al~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~-lG~-~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~v 419 (426)
+...|+..++.|+.|+|+ |+||++++ +..|.. .|. ++.+++..|..+..++...++..++..+|++|.+.
T Consensus 190 ~Hn~~g~avant~~al~~------ga~~~d~s--~~glG~~~G~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~v~~~~~ 261 (344)
T TIGR02146 190 AHNDTGCAVANAYNAIEG------GATIVDTT--VLGIGERNGITPLGGILARLYYHTPMYVYKLGKLIELTRMVAGEVG 261 (344)
T ss_pred ecCCCCHHHHHHHHHHHc------CCCEEEEE--eeeeeCCCCCccHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHhC
Confidence 999999999999999999 99999996 333322 343 23455666666555554456778899999999999
Q ss_pred hhhccCC
Q 014369 420 AADASKI 426 (426)
Q Consensus 420 f~h~Sgi 426 (426)
|+|+||+
T Consensus 262 ~~~~~~~ 268 (344)
T TIGR02146 262 VTIPFNN 268 (344)
T ss_pred CCCCCCC
Confidence 9999986
No 49
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.29 E-value=1.9e-05 Score=82.82 Aligned_cols=170 Identities=19% Similarity=0.200 Sum_probs=110.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC----ChhhHHHHHHcCCCEEE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP----NLKGFEAAIAAGAKEVA 219 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----~~~di~~a~~~Gv~~V~ 219 (426)
..+.++++++++.+.+.|++.||+|++.... ...+.+.+..+..+...+..-++ ...+++.+.++|++.|+
T Consensus 12 ~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~-----~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~ 86 (430)
T PRK07028 12 LLELDRAVEIAKEAVAGGADWIEAGTPLIKS-----EGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGADIVC 86 (430)
T ss_pred cCCHHHHHHHHHHHHhcCCcEEEeCCHHHHH-----hhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHcCCCEEE
Confidence 5789999999999999999999998643110 11222333333323333333222 23489999999999999
Q ss_pred EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299 (426)
Q Consensus 220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT 299 (426)
+....++ ..+.+++++++++|+.+..-+ ++++ ++. +.++.+.+.|+|.|.+.
T Consensus 87 v~g~~~~---------------~~~~~~i~~a~~~G~~~~~g~---~s~~----t~~----e~~~~a~~~GaD~I~~~-- 138 (430)
T PRK07028 87 ILGLADD---------------STIEDAVRAARKYGVRLMADL---INVP----DPV----KRAVELEELGVDYINVH-- 138 (430)
T ss_pred EecCCCh---------------HHHHHHHHHHHHcCCEEEEEe---cCCC----CHH----HHHHHHHhcCCCEEEEE--
Confidence 8743322 123577888999999876311 1111 112 23566778999999765
Q ss_pred CCC---CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369 300 IGV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 300 ~G~---~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD 351 (426)
.|. ..+....+.++.+++.++ .+|.+|+ |....|+..++++||+.|-
T Consensus 139 pg~~~~~~~~~~~~~l~~l~~~~~-iPI~a~G----GI~~~n~~~~l~aGAdgv~ 188 (430)
T PRK07028 139 VGIDQQMLGKDPLELLKEVSEEVS-IPIAVAG----GLDAETAAKAVAAGADIVI 188 (430)
T ss_pred eccchhhcCCChHHHHHHHHhhCC-CcEEEEC----CCCHHHHHHHHHcCCCEEE
Confidence 222 122233457777777666 5789988 9999999999999999764
No 50
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=98.26 E-value=0.00024 Score=71.36 Aligned_cols=227 Identities=12% Similarity=0.139 Sum_probs=140.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEEEeC-------------ChhhHHH
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTP-------------NLKGFEA 209 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~-------------~~~di~~ 209 (426)
.++.++.++.++...+.|++.|-+.....|.. ......++++.+++ .+++.+.++++ ..+.+++
T Consensus 35 ~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~--~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~ 112 (309)
T TIGR00423 35 VLSLEEILEKVKEAVAKGATEVCIQGGLNPQL--DIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKR 112 (309)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCCC--CHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHH
Confidence 57999999999999999999888864333311 01112344455543 35677776654 1345788
Q ss_pred HHHcCCCEEE-Eec-cCChHHHhhhc--CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369 210 AIAAGAKEVA-IFA-SASEAFSKSNI--NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (426)
Q Consensus 210 a~~~Gv~~V~-i~~-~~Sd~~~~~~~--~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~ 285 (426)
..++|++.+. +.. ..++-..+... +.+.+ +..++++.|+++|+++..+++ +|.+ -+++...+.+..
T Consensus 113 LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~----~~l~~i~~a~~~Gi~~~s~~i--iG~~----Et~ed~~~~l~~ 182 (309)
T TIGR00423 113 LKKAGLDSMPGTGAEILDDSVRRKICPNKLSSD----EWLEVIKTAHRLGIPTTATMM--FGHV----ENPEHRVEHLLR 182 (309)
T ss_pred HHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHH----HHHHHHHHHHHcCCCceeeEE--ecCC----CCHHHHHHHHHH
Confidence 8899999774 222 12232222221 22444 335788899999999987776 5654 256777777777
Q ss_pred HHhCCCCEE----EE------cCCC-------CCCCHHHHHHHHHHHHHhcCCc-eEEEEeCCCcCcHHHHHHHHHHcCC
Q 014369 286 LHDMGCFEI----SL------GDTI-------GVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLPNILISLQMGI 347 (426)
Q Consensus 286 l~~~Gad~I----~l------~DT~-------G~~~P~~v~~li~~l~~~~p~~-~i~~H~HNd~GlA~ANaLaAl~aGa 347 (426)
+.+++.+.. .+ .+|- ...+|.+..++++..|-.+|.+ .|..-. +.+|.-. ...|+.+||
T Consensus 183 lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp~~~~i~a~~-~~l~~~~--~~~~l~~Ga 259 (309)
T TIGR00423 183 IRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLNNIRNIQASW-VKLGLKL--AQVALEFGA 259 (309)
T ss_pred HHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcCCCccceecc-hhcCHHH--HHHHHhCCC
Confidence 777765421 11 2552 2367888888888888777743 254433 4555432 478899999
Q ss_pred CEEeecccCCCCCCCCCCCCC-cccHHHHHHHHHhCCCC
Q 014369 348 STVDCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVE 385 (426)
Q Consensus 348 ~~VD~Sv~GlGecP~a~graG-Na~lEevv~~L~~lG~~ 385 (426)
+-+++|+..==-=|.|....+ -+..++++..++..|..
T Consensus 260 nd~~gt~~~e~v~~~ag~~~~~~~~~~~l~~~~~~~g~~ 298 (309)
T TIGR00423 260 NDLGGTLMEENISKAAGAKSGVGLTVEELIEAIKDAGRV 298 (309)
T ss_pred ccCCcccccceeccccCCCCCCCCCHHHHHHHHHHcCCC
Confidence 999988742111112211223 36789999888887764
No 51
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=98.26 E-value=0.00015 Score=73.55 Aligned_cols=224 Identities=15% Similarity=0.151 Sum_probs=139.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEEEeCC-------------hhhHHH
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPN-------------LKGFEA 209 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~~-------------~~di~~ 209 (426)
.++.++.++.++.+.+.|++.|-+.....|.. + .....++++.++. .+++.+.++++. .+.++.
T Consensus 71 ~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~-~-~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~ 148 (340)
T TIGR03699 71 VLSVEEILQKIEELVAYGGTQILLQGGVNPDL-G-LDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLER 148 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecCCCCCC-C-HHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHH
Confidence 57999999999999999999988854333321 1 0112334455542 345554333321 456778
Q ss_pred HHHcCCCEEEEe--ccCChHHHhhhc--CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369 210 AIAAGAKEVAIF--ASASEAFSKSNI--NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (426)
Q Consensus 210 a~~~Gv~~V~i~--~~~Sd~~~~~~~--~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~ 285 (426)
..++|++.+.-. -..++-..+.-. ..|.++ ..++++.|++.|+++.+.++ +|. + -+++...+.++.
T Consensus 149 Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~----~l~~i~~a~~~Gi~v~~~~i--iGl---g-Et~ed~~~~l~~ 218 (340)
T TIGR03699 149 LKEAGLDSIPGGGAEILSDRVRKIISPKKISSEE----WLEVMETAHKLGLPTTATMM--FGH---V-ETLEDRIEHLER 218 (340)
T ss_pred HHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHH----HHHHHHHHHHcCCCccceeE--eeC---C-CCHHHHHHHHHH
Confidence 889999977521 123343333321 235444 45788899999999887666 442 1 246777777888
Q ss_pred HHhCCCCE------EEE----cCCC----CCCCHHHHHHHHHHHHHhcCCc-eEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 286 LHDMGCFE------ISL----GDTI----GVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 286 l~~~Gad~------I~l----~DT~----G~~~P~~v~~li~~l~~~~p~~-~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
+.+.+.+. |-+ .+|- ...+|.+..++++..|-.+|+. .|..-. ..+ +......|+.+||+-+
T Consensus 219 l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~~~~i~~~~-~~~--g~~~~~~~l~~Gan~~ 295 (340)
T TIGR03699 219 IRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTEYLKVLAISRIFLDNIPNIQASW-VTQ--GKEVGQLALHFGANDF 295 (340)
T ss_pred HHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHHHHHHHHHHHHcCCCCCcccCCc-ccc--ChHHHHHHHhcCCccC
Confidence 88887654 221 2432 2467899999999988888852 233322 223 3345677999999999
Q ss_pred eecccCCCCCCCCCCCCCccc---HHHHHHHHHhCCCCC
Q 014369 351 DCSVAGLGGCPYAKGASGNVA---TEDVVYMLSGLGVET 386 (426)
Q Consensus 351 D~Sv~GlGecP~a~graGNa~---lEevv~~L~~lG~~~ 386 (426)
++++.. |. |.. .+|..+ +++++.+++.+|..+
T Consensus 296 ~g~~~~-~~--~~~-~~g~~~~~~~~~~~~~i~~~g~~~ 330 (340)
T TIGR03699 296 GSTMLE-EN--VVA-AAGATHRASREEIIRIIREAGFIP 330 (340)
T ss_pred CCcccc-cc--ccc-cCCCCCCCCHHHHHHHHHHcCCCe
Confidence 988763 11 111 244444 799999999888753
No 52
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.17 E-value=0.00026 Score=69.54 Aligned_cols=175 Identities=18% Similarity=0.239 Sum_probs=112.6
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--cc--cc---------cCHHHHHHHhHhc----CCCcEEEEe-CCh--
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKW--VP--QL---------ADARDVMEAVRDL----EGARLPVLT-PNL-- 204 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--~p--~~---------~D~~~v~~~i~~~----~~~~l~~l~-~~~-- 204 (426)
-+.+.-+++++.|.+.|++.||+|+|-+.+. .| |. .+.+.+++.++.+ .+..+..|. .|.
T Consensus 21 P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~ 100 (256)
T TIGR00262 21 PTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIF 100 (256)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHh
Confidence 3778889999999999999999999754321 12 10 1223444444433 344444443 343
Q ss_pred -----hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHH
Q 014369 205 -----KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV 279 (426)
Q Consensus 205 -----~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l 279 (426)
+-++.+.++|++.+-+..- .++...+.++++|++|+....-+ .| .++++.+
T Consensus 101 ~~G~e~f~~~~~~aGvdgviipDl----------------p~ee~~~~~~~~~~~gl~~i~lv-----~P---~T~~eri 156 (256)
T TIGR00262 101 RKGVEEFYAKCKEVGVDGVLVADL----------------PLEESGDLVEAAKKHGVKPIFLV-----AP---NADDERL 156 (256)
T ss_pred hhhHHHHHHHHHHcCCCEEEECCC----------------ChHHHHHHHHHHHHCCCcEEEEE-----CC---CCCHHHH
Confidence 3467888999998887632 13456688899999999865222 12 2456666
Q ss_pred HHHHHHHHhCC-CCEEEEcCCCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH-HHHHHHHHHcCCCEE
Q 014369 280 AYVAKELHDMG-CFEISLGDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTV 350 (426)
Q Consensus 280 ~~~~~~l~~~G-ad~I~l~DT~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~V 350 (426)
..+++. ..| +..+......|.- .+.++.++++.+++..+. +|.+ ++|.. -.++-.++++|||.|
T Consensus 157 ~~i~~~--~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~-pi~v----gfGI~~~e~~~~~~~~GADgv 224 (256)
T TIGR00262 157 KQIAEK--SQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAK-PVLV----GFGISKPEQVKQAIDAGADGV 224 (256)
T ss_pred HHHHHh--CCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCC-CEEE----eCCCCCHHHHHHHHHcCCCEE
Confidence 666653 123 3344556777763 567799999999987643 4444 55555 467777889999965
No 53
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=98.15 E-value=0.00027 Score=72.06 Aligned_cols=230 Identities=13% Similarity=0.111 Sum_probs=140.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEEEeC-------------ChhhHH
Q 014369 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTP-------------NLKGFE 208 (426)
Q Consensus 143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~-------------~~~di~ 208 (426)
..++.++.++.++.+.+.|++.|-+.....|.. ......++++.+++ .++..+.++++ ..+.++
T Consensus 68 y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~--~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~ 145 (343)
T TIGR03551 68 YLLSLEEIAERAAEAWKAGATEVCIQGGIHPDL--DGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALK 145 (343)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCC--CHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHH
Confidence 357999999999999999999888863322211 01111344455553 35666665432 235678
Q ss_pred HHHHcCCCEEEEeccCChHHHh---hhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369 209 AAIAAGAKEVAIFASASEAFSK---SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (426)
Q Consensus 209 ~a~~~Gv~~V~i~~~~Sd~~~~---~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~ 285 (426)
+..++|++.+.. ...+.+.. +++..+ .-..++..+.++.|+++|+++.+.++ +|.+ . +.+...+.+..
T Consensus 146 ~LkeAGl~~i~~--~~~E~~~~~v~~~i~~~-~~~~~~~~~~i~~a~~~Gi~v~s~~i--~G~~-E---t~ed~~~~l~~ 216 (343)
T TIGR03551 146 RLKEAGLDSMPG--TAAEILDDEVRKVICPD-KLSTAEWIEIIKTAHKLGIPTTATIM--YGHV-E---TPEHWVDHLLI 216 (343)
T ss_pred HHHHhCcccccC--cchhhcCHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCcccceEE--EecC-C---CHHHHHHHHHH
Confidence 888999998762 11132221 112110 01233446788999999999987666 5544 2 45777777777
Q ss_pred HHhCCCCE----EEEc------CCC--------CCCCHHHHHHHHHHHHHhcCCc--eEEEEeCCCcCcHHHHHHHHHHc
Q 014369 286 LHDMGCFE----ISLG------DTI--------GVGTPGTVVPMLEAVMAVVPVE--KLAVHLHDTYGQSLPNILISLQM 345 (426)
Q Consensus 286 l~~~Gad~----I~l~------DT~--------G~~~P~~v~~li~~l~~~~p~~--~i~~H~HNd~GlA~ANaLaAl~a 345 (426)
+.+++.+. ..++ .|- ..++|.+..++|+..|=.+|.. .|..-. .++|.. -...++.+
T Consensus 217 lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~-~~l~~~--~~~~~l~~ 293 (343)
T TIGR03551 217 LREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASW-VKLGKK--LAQVALRC 293 (343)
T ss_pred HHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccc-cccCHH--HHHHHHhC
Confidence 77666542 2222 332 2357889999999988878863 455544 344443 34888999
Q ss_pred CCCEEeecccCCCCCCCCCCCCC-cccHHHHHHHHHhCCCCC
Q 014369 346 GISTVDCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVET 386 (426)
Q Consensus 346 Ga~~VD~Sv~GlGecP~a~graG-Na~lEevv~~L~~lG~~~ 386 (426)
||+-+++|+..=--=|.|....+ ...+++++.+.+..|..+
T Consensus 294 Gan~~~g~~~~e~v~~~~g~~~~~~~~~~~~~~~i~~~g~~~ 335 (343)
T TIGR03551 294 GANDLGGTLMEESISRAAGASHGEYLSPEELEAIIEDAGRIP 335 (343)
T ss_pred CCccCCccceecccccccCCCCCCCCCHHHHHHHHHHcCCCe
Confidence 99999999854111011211222 246799999998888753
No 54
>PRK07094 biotin synthase; Provisional
Probab=98.12 E-value=0.00052 Score=69.02 Aligned_cols=200 Identities=15% Similarity=0.105 Sum_probs=128.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--CChhhHHHHHHcCCCEEEEe
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PNLKGFEAAIAAGAKEVAIF 221 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~~~~di~~a~~~Gv~~V~i~ 221 (426)
.++.++.++.++.+.+.|++.|-++....+.+ + ..+..++++.++..+++.+..-. .+.+.++...++|++.+.+.
T Consensus 69 ~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~-~-~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~g 146 (323)
T PRK07094 69 RLSPEEILECAKKAYELGYRTIVLQSGEDPYY-T-DEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLR 146 (323)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCC-C-HHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHHHcCCCEEEec
Confidence 46899999999999999999988864322211 0 11223444444433444443222 34678889999999999987
Q ss_pred ccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-----
Q 014369 222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----- 296 (426)
Q Consensus 222 ~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----- 296 (426)
+-..+......++.. ...++..+.++.++++|+.+..+++ +|.|.. +.+.+.+.++.+.+++++.+.+
T Consensus 147 lEs~~~~~~~~i~~~--~s~~~~~~~i~~l~~~Gi~v~~~~i--iGlpge---t~ed~~~~l~~l~~l~~~~v~~~~~~P 219 (323)
T PRK07094 147 HETADKELYAKLHPG--MSFENRIACLKDLKELGYEVGSGFM--VGLPGQ---TLEDLADDILFLKELDLDMIGIGPFIP 219 (323)
T ss_pred cccCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCeecceEE--EECCCC---CHHHHHHHHHHHHhCCCCeeeeecccc
Confidence 644422222334332 2345566888899999998877666 565544 4688888888899999886654
Q ss_pred -cCCC----CCCCHHHHHHHHHHHHHhcCCceE----EEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 014369 297 -GDTI----GVGTPGTVVPMLEAVMAVVPVEKL----AVHLHDTYGQSLPNILISLQMGISTVDCSVAGL 357 (426)
Q Consensus 297 -~DT~----G~~~P~~v~~li~~l~~~~p~~~i----~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~Gl 357 (426)
++|- ....+.++.++++..|-.+|...| ++-++... -...++.+||+.+=.++..-
T Consensus 220 ~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~-----~~~~~l~~Gan~~~~~~~~~ 284 (323)
T PRK07094 220 HPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPATTALGTLNPD-----GREKGLKAGANVVMPNLTPG 284 (323)
T ss_pred CCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcccCCccccCch-----hHHHHHHcCCceecCCCCch
Confidence 2221 234668888899998888886433 22222221 23589999999886666543
No 55
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.10 E-value=0.00035 Score=68.95 Aligned_cols=176 Identities=14% Similarity=0.166 Sum_probs=114.3
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--cc--cc---------cCHHHHHHHhHhc---CCCcEEEEe-CCh---
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKW--VP--QL---------ADARDVMEAVRDL---EGARLPVLT-PNL--- 204 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--~p--~~---------~D~~~v~~~i~~~---~~~~l~~l~-~~~--- 204 (426)
-+.+.-+++++.|.+.|++.||+|+|-+.+. .| |. .+.+.+++.++++ .++.+..|+ .|.
T Consensus 26 P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~ 105 (263)
T CHL00200 26 PDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLH 105 (263)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHH
Confidence 4778889999999999999999998754221 12 11 1122344444432 345555555 342
Q ss_pred ----hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369 205 ----KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA 280 (426)
Q Consensus 205 ----~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~ 280 (426)
+-++.+.++|++.|-+..= -++...+..+.++++|+....-+ .|. ++++.+.
T Consensus 106 ~G~e~F~~~~~~aGvdgviipDL----------------P~ee~~~~~~~~~~~gi~~I~lv-----~Pt---T~~eri~ 161 (263)
T CHL00200 106 YGINKFIKKISQAGVKGLIIPDL----------------PYEESDYLISVCNLYNIELILLI-----APT---SSKSRIQ 161 (263)
T ss_pred hCHHHHHHHHHHcCCeEEEecCC----------------CHHHHHHHHHHHHHcCCCEEEEE-----CCC---CCHHHHH
Confidence 2367788999999888632 13456788889999999876322 232 3566666
Q ss_pred HHHHHHHhCCCCEEEEcCCCCC--CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHH-HHHHHHHHcCCCEE
Q 014369 281 YVAKELHDMGCFEISLGDTIGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGISTV 350 (426)
Q Consensus 281 ~~~~~l~~~Gad~I~l~DT~G~--~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~-ANaLaAl~aGa~~V 350 (426)
.+++....+ +..+...-+.|. ..|.++.++++.+|+... .+|.+ ++|-.. .++-...++|||.|
T Consensus 162 ~i~~~a~gF-IY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~-~Pi~v----GFGI~~~e~~~~~~~~GADGv 228 (263)
T CHL00200 162 KIARAAPGC-IYLVSTTGVTGLKTELDKKLKKLIETIKKMTN-KPIIL----GFGISTSEQIKQIKGWNINGI 228 (263)
T ss_pred HHHHhCCCc-EEEEcCCCCCCCCccccHHHHHHHHHHHHhcC-CCEEE----ECCcCCHHHHHHHHhcCCCEE
Confidence 666432111 345555777777 567899999999999764 35665 567763 45555677889965
No 56
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=98.06 E-value=0.0007 Score=69.32 Aligned_cols=229 Identities=14% Similarity=0.106 Sum_probs=141.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeCC-------------hhhHHH
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPN-------------LKGFEA 209 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~~-------------~~di~~ 209 (426)
.++.++.++.++...+.|++.|-+.+...|. .+ +....++++.++ ..|++.+.++++. .+.+++
T Consensus 78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~-~~-~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~ 155 (351)
T TIGR03700 78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPN-LP-FEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDE 155 (351)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCCCC-CC-HHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4799999999999999999999887554443 11 112234444454 3467777776531 234788
Q ss_pred HHHcCCCEEE-Eec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369 210 AIAAGAKEVA-IFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH 287 (426)
Q Consensus 210 a~~~Gv~~V~-i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~ 287 (426)
..++|++.+. ... ..++...+ ++..+ ....++..++++.|+++|+++...++ +|.. -++++..+.+..+.
T Consensus 156 LkeAGld~~~~~g~E~~~~~v~~-~i~~~-~~~~~~~l~~i~~a~~~Gi~~~sg~i--~Glg----Et~edrv~~l~~Lr 227 (351)
T TIGR03700 156 LKEAGLDSMPGGGAEIFAEEVRQ-QICPE-KISAERWLEIHRTAHELGLKTNATML--YGHI----ETPAHRVDHMLRLR 227 (351)
T ss_pred HHHcCCCcCCCCcccccCHHHHh-hcCCC-CCCHHHHHHHHHHHHHcCCCcceEEE--eeCC----CCHHHHHHHHHHHH
Confidence 8899999776 221 11232221 22221 11244555788899999999987776 4432 24677777777777
Q ss_pred hCCCCE------EEE----cCCC------CCCCHHHHHHHHHHHHHhcCCc-eEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 288 DMGCFE------ISL----GDTI------GVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 288 ~~Gad~------I~l----~DT~------G~~~P~~v~~li~~l~~~~p~~-~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
+.+.+. |-+ .+|- ...+|.+..++++..|=.+|.+ .|..-. ... +...+..++.+||+-+
T Consensus 228 ~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~Rl~l~~i~~i~a~w-~~~--~~~~~~~~L~~Gand~ 304 (351)
T TIGR03700 228 ELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSRLYLDNIPHIKAYW-VML--GLKLAQVALAFGVNDL 304 (351)
T ss_pred HhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHHHhcCCCCcccccc-ccc--CHHHHHHHHhcCCCCC
Confidence 776533 333 2553 4578888899888888777742 222211 111 3345689999999999
Q ss_pred eecccCCCCCCCCCCCCC-cccHHHHHHHHHhCCCC
Q 014369 351 DCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVE 385 (426)
Q Consensus 351 D~Sv~GlGecP~a~graG-Na~lEevv~~L~~lG~~ 385 (426)
.+|+..=---|.|....+ .+..++++..++..|..
T Consensus 305 ggt~~~e~v~~~~g~~~~~~~~~~~l~~~i~~~g~~ 340 (351)
T TIGR03700 305 DGTVVEEKIGHDAGAKSPQALSKDELVRLIRDAGRV 340 (351)
T ss_pred CccCccceeeccccCCCCCCCCHHHHHHHHHHcCCC
Confidence 988763111111111122 46789999999888775
No 57
>PLN02591 tryptophan synthase
Probab=97.93 E-value=0.0015 Score=64.01 Aligned_cols=175 Identities=21% Similarity=0.226 Sum_probs=110.9
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--cc--ccc---------CHHHHHHHhHhc---CCCcEEEEeC-Ch---
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKW--VP--QLA---------DARDVMEAVRDL---EGARLPVLTP-NL--- 204 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--~p--~~~---------D~~~v~~~i~~~---~~~~l~~l~~-~~--- 204 (426)
-+.+.-+++++.|.+.|++.||+|+|-+.+. .| |.+ +.+.+++.++++ .++.+..|+. |.
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~ 92 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILK 92 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHH
Confidence 4677889999999999999999999754321 12 111 223444444432 3345555553 42
Q ss_pred ----hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369 205 ----KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA 280 (426)
Q Consensus 205 ----~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~ 280 (426)
+-++.+.++|++-+-+..- . ++...+..++++++|+....-+ .| .++++.+.
T Consensus 93 ~G~~~F~~~~~~aGv~GviipDL------------P----~ee~~~~~~~~~~~gl~~I~lv-----~P---tt~~~ri~ 148 (250)
T PLN02591 93 RGIDKFMATIKEAGVHGLVVPDL------------P----LEETEALRAEAAKNGIELVLLT-----TP---TTPTERMK 148 (250)
T ss_pred hHHHHHHHHHHHcCCCEEEeCCC------------C----HHHHHHHHHHHHHcCCeEEEEe-----CC---CCCHHHHH
Confidence 2356788899999888621 1 3556788899999999875322 12 23456666
Q ss_pred HHHHHHHhCC-CCEEEEcCCCCC--CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH-HHHHHHHHHcCCCEE
Q 014369 281 YVAKELHDMG-CFEISLGDTIGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTV 350 (426)
Q Consensus 281 ~~~~~l~~~G-ad~I~l~DT~G~--~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~V 350 (426)
.+++. .-| +..|...-+.|. ..|.++.++++.+|+.. +.++.+ -+|.. -.++-..++.|||.|
T Consensus 149 ~ia~~--~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~Pv~v----GFGI~~~e~v~~~~~~GADGv 215 (250)
T PLN02591 149 AIAEA--SEGFVYLVSSTGVTGARASVSGRVESLLQELKEVT-DKPVAV----GFGISKPEHAKQIAGWGADGV 215 (250)
T ss_pred HHHHh--CCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC-CCceEE----eCCCCCHHHHHHHHhcCCCEE
Confidence 66654 123 344455666776 55899999999999863 334443 33444 346666778889864
No 58
>PRK06256 biotin synthase; Validated
Probab=97.92 E-value=0.0055 Score=62.01 Aligned_cols=219 Identities=15% Similarity=0.077 Sum_probs=137.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEec-CCCCCccccccCHHHHHHHhH---hcCCCcEEEEe--CChhhHHHHHHcCCCE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATS-FVSPKWVPQLADARDVMEAVR---DLEGARLPVLT--PNLKGFEAAIAAGAKE 217 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~-~~s~~~~p~~~D~~~v~~~i~---~~~~~~l~~l~--~~~~di~~a~~~Gv~~ 217 (426)
.++.++.++.++.+.+.|+..+-+-. ...|. ..+.+.+.+.++ ...++.+.+-. .+.+.++...++|++.
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~----~~~~~~~~e~i~~i~~~~~i~~~~~~g~l~~e~l~~LkeaG~~~ 165 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPS----GKEVDQVVEAVKAIKEETDLEICACLGLLTEEQAERLKEAGVDR 165 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCC----chHHHHHHHHHHHHHhcCCCcEEecCCcCCHHHHHHHHHhCCCE
Confidence 46899999999999999987665422 11121 112234444444 33444443322 2457788889999999
Q ss_pred EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-
Q 014369 218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL- 296 (426)
Q Consensus 218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l- 296 (426)
+.+.+-.|+.+.+ +++.+ ...++..++++.+++.|+.+...+. +|. . -+++.+.+.++.+.+.+++.|.+
T Consensus 166 v~~~lEts~~~~~-~i~~~--~t~~~~i~~i~~a~~~Gi~v~~~~I--~Gl-g---Et~ed~~~~~~~l~~l~~~~v~i~ 236 (336)
T PRK06256 166 YNHNLETSRSYFP-NVVTT--HTYEDRIDTCEMVKAAGIEPCSGGI--IGM-G---ESLEDRVEHAFFLKELDADSIPIN 236 (336)
T ss_pred EecCCccCHHHHh-hcCCC--CCHHHHHHHHHHHHHcCCeeccCeE--EeC-C---CCHHHHHHHHHHHHhCCCCEEeec
Confidence 9887655664433 33332 2355666788899999998876665 443 1 35788888888899999887765
Q ss_pred -----cCC----CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCC
Q 014369 297 -----GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGAS 367 (426)
Q Consensus 297 -----~DT----~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~gra 367 (426)
+.| .....|.++.++++.+|-.+|...|-+-++-..-++-. ..+++ +||+.+=+. ++=- ..
T Consensus 237 ~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~-~~~~~-~g~~~~~~g--~~lt------~~ 306 (336)
T PRK06256 237 FLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSL-QPLGL-GGANSVIVG--NYLT------TV 306 (336)
T ss_pred ccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhh-HHHHh-ccCceeeEC--Cccc------CC
Confidence 344 23467899999999998888977676665542222221 12334 688854221 1111 36
Q ss_pred CcccHHHHHHHHHhCCCCC
Q 014369 368 GNVATEDVVYMLSGLGVET 386 (426)
Q Consensus 368 GNa~lEevv~~L~~lG~~~ 386 (426)
|+...+++- +++.+|+..
T Consensus 307 g~~~~~d~~-~~~~~g~~~ 324 (336)
T PRK06256 307 GQPATADLD-MIEDLGFEI 324 (336)
T ss_pred CCChHHHHH-HHHHCCCCc
Confidence 666666644 788888764
No 59
>PLN02389 biotin synthase
Probab=97.92 E-value=0.006 Score=63.33 Aligned_cols=219 Identities=14% Similarity=0.097 Sum_probs=138.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEec-C---CCCCccccccCHHHHHHHhHhcCCCcEEEEe----CChhhHHHHHHcCC
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATS-F---VSPKWVPQLADARDVMEAVRDLEGARLPVLT----PNLKGFEAAIAAGA 215 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~-~---~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~----~~~~di~~a~~~Gv 215 (426)
.++.++.++.++.+.+.|+..|-++. + ..++ .+.+.+.+.++.++...+.+.+ .+.+.++...++|+
T Consensus 115 ~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~-----~~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGl 189 (379)
T PLN02389 115 LMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRK-----TNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGL 189 (379)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCCh-----hHHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999887652 1 1211 1245666666655433232222 24678899999999
Q ss_pred CEEEEeccCChHHHhhhc-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC--CCC
Q 014369 216 KEVAIFASASEAFSKSNI-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM--GCF 292 (426)
Q Consensus 216 ~~V~i~~~~Sd~~~~~~~-~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~--Gad 292 (426)
+.+.+-+-+++.+-.... .. ..++..+.++.|++.|+++...+. +|. .. ++++..+.+..+.++ .++
T Consensus 190 d~~~~~LeTs~~~y~~i~~~~----s~e~rl~ti~~a~~~Gi~v~sg~I--iGl-gE---t~edrv~~l~~Lr~L~~~~~ 259 (379)
T PLN02389 190 TAYNHNLDTSREYYPNVITTR----SYDDRLETLEAVREAGISVCSGGI--IGL-GE---AEEDRVGLLHTLATLPEHPE 259 (379)
T ss_pred CEEEeeecCChHHhCCcCCCC----CHHHHHHHHHHHHHcCCeEeEEEE--ECC-CC---CHHHHHHHHHHHHhcccCCc
Confidence 999888776663222211 22 455556788899999999876665 554 22 466777777777777 456
Q ss_pred EEEE------cCC----CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC-CCCC
Q 014369 293 EISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL-GGCP 361 (426)
Q Consensus 293 ~I~l------~DT----~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~Gl-GecP 361 (426)
.|.+ ++| ....+|.+..++|+..|-.+|+..+-+-.-- .-++......|+.+||+-+=+ +++ =
T Consensus 260 ~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr-~~l~~~~~~~~l~~GAN~~~~--g~~~L--- 333 (379)
T PLN02389 260 SVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGR-VRFSMAEQALCFLAGANSIFT--GDKLL--- 333 (379)
T ss_pred EEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCccccccccc-cccChhHHHHHHHhCCCEEEE--CCccc---
Confidence 5553 355 2357788999999999888886322221111 122334468899999995522 121 1
Q ss_pred CCCCCCCcccHHHHHHHHHhCCCCCC
Q 014369 362 YAKGASGNVATEDVVYMLSGLGVETN 387 (426)
Q Consensus 362 ~a~graGNa~lEevv~~L~~lG~~~~ 387 (426)
-+.+.+.++=+.+++++|++..
T Consensus 334 ----tt~g~~~~~d~~~~~~lg~~~~ 355 (379)
T PLN02389 334 ----TTPNNDFDADQAMFKELGLIPK 355 (379)
T ss_pred ----CCCCCChHHHHHHHHHcCCCcc
Confidence 1233445555678888888743
No 60
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.90 E-value=0.0024 Score=62.08 Aligned_cols=177 Identities=21% Similarity=0.181 Sum_probs=110.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCc-ccccc-CHH--------HHHHHhHhcCCCcEEEEe------CChh-
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PKW-VPQLA-DAR--------DVMEAVRDLEGARLPVLT------PNLK- 205 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~-~p~~~-D~~--------~v~~~i~~~~~~~l~~l~------~~~~- 205 (426)
..+.++-.++++.|++. ++.||+|+|-+ |.. .|... +.. ++++.+++..+..+..++ .+..
T Consensus 14 ~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~ 92 (244)
T PRK13125 14 YPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVDSLDN 92 (244)
T ss_pred CCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhhCHHH
Confidence 45778889999999998 99999998643 321 23221 112 233444433344443332 2333
Q ss_pred hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (426)
Q Consensus 206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~ 285 (426)
-++.+.++|++.|-+..-.- |+.+...+++++++++|+++...+. ..++++.+..+++
T Consensus 93 ~i~~~~~~Gadgvii~dlp~-------------e~~~~~~~~~~~~~~~Gl~~~~~v~--------p~T~~e~l~~~~~- 150 (244)
T PRK13125 93 FLNMARDVGADGVLFPDLLI-------------DYPDDLEKYVEIIKNKGLKPVFFTS--------PKFPDLLIHRLSK- 150 (244)
T ss_pred HHHHHHHcCCCEEEECCCCC-------------CcHHHHHHHHHHHHHcCCCEEEEEC--------CCCCHHHHHHHHH-
Confidence 36788899999988853110 2235567889999999999874332 2345666666554
Q ss_pred HHhCCCCEE--EEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCc-HHHHHHHHHHcCCCEE
Q 014369 286 LHDMGCFEI--SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQMGISTV 350 (426)
Q Consensus 286 l~~~Gad~I--~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~Gl-A~ANaLaAl~aGa~~V 350 (426)
..-..+ .+.-..|.-.+..+.+.++.+++..+..+|.+ +.|. ...++-.++++|||.|
T Consensus 151 ---~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v----~gGI~~~e~i~~~~~~gaD~v 211 (244)
T PRK13125 151 ---LSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVV----GFGLDSPEDARDALSAGADGV 211 (244)
T ss_pred ---hCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEE----eCCcCCHHHHHHHHHcCCCEE
Confidence 222333 33333466678889999999998876444543 6676 4456666679999965
No 61
>PRK08445 hypothetical protein; Provisional
Probab=97.90 E-value=0.0027 Score=65.14 Aligned_cols=223 Identities=10% Similarity=0.081 Sum_probs=137.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHH---HHHHHhH-hcCCCcEEEEeCC-------------hhh
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR---DVMEAVR-DLEGARLPVLTPN-------------LKG 206 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~---~v~~~i~-~~~~~~l~~l~~~-------------~~d 206 (426)
.++.++.++.++...+.|...|=+-....|. .+.+ ++++.++ ..|++++.++.+. .+.
T Consensus 72 ~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~-----~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~ 146 (348)
T PRK08445 72 ILSFEEIDKKIEELLAIGGTQILFQGGVHPK-----LKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEV 146 (348)
T ss_pred eCCHHHHHHHHHHHHHcCCCEEEEecCCCCC-----CCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHH
Confidence 5699999999999999999866332212221 1333 3444454 4567777665431 356
Q ss_pred HHHHHHcCCCEEE-E-eccCChHHHhhh--cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369 207 FEAAIAAGAKEVA-I-FASASEAFSKSN--INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 282 (426)
Q Consensus 207 i~~a~~~Gv~~V~-i-~~~~Sd~~~~~~--~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~ 282 (426)
+++..++|++.+. + .=+.++-..+.- -++|.++. .++++.|+++|+++.+.++ +|.. . ++++..+.
T Consensus 147 L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~----i~~i~~a~~~Gi~~~sg~i--~G~~-E---t~edr~~~ 216 (348)
T PRK08445 147 LERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRW----LEVHRQAHLIGMKSTATMM--FGTV-E---NDEEIIEH 216 (348)
T ss_pred HHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCeeeeEEE--ecCC-C---CHHHHHHH
Confidence 7788899999874 4 223444333322 25676654 4888899999999998776 5532 2 35555555
Q ss_pred HHHHHhCCC-----CEEE-----EcCCC--------CCCCHHHHHHHHHHHHHhcCC-ceEEEEeCCCcCcHHHHHHHHH
Q 014369 283 AKELHDMGC-----FEIS-----LGDTI--------GVGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISL 343 (426)
Q Consensus 283 ~~~l~~~Ga-----d~I~-----l~DT~--------G~~~P~~v~~li~~l~~~~p~-~~i~~H~HNd~GlA~ANaLaAl 343 (426)
+..+.++.. ..+. -++|- ..++|.+.-++++..|=.+|. ..|..-. -..|..+ +..|+
T Consensus 217 l~~lreLq~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~~~~i~a~~-~~~g~~~--~~~~L 293 (348)
T PRK08445 217 WERIRDLQDETGGFRAFILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLFLDNFKNIQSSW-VTQGSYI--GQLAL 293 (348)
T ss_pred HHHHHHHHHHhCCeeEEeccccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCCCCCccCCC-cccCHHH--HHHHH
Confidence 555555433 2222 12332 137788888888888776775 2333333 2344444 58899
Q ss_pred HcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369 344 QMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE 385 (426)
Q Consensus 344 ~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~ 385 (426)
.+||+-+++|+..=---+.|....+ ...|+++.+.+..|..
T Consensus 294 ~~Gand~~gt~~~e~i~~~ag~~~~-~~~~~~~~~i~~~g~~ 334 (348)
T PRK08445 294 LFGANDLGSTMMEENVVKAAGASFR-MNQAEMIELIKDIGEI 334 (348)
T ss_pred hcCCccCccccccccchhccCCCCC-CCHHHHHHHHHHcCCC
Confidence 9999999999964211112222233 4678888888887764
No 62
>PRK07360 FO synthase subunit 2; Reviewed
Probab=97.85 E-value=0.0017 Score=67.07 Aligned_cols=219 Identities=13% Similarity=0.134 Sum_probs=140.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh----cCCCcEEEEeC-------------Chh
Q 014369 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD----LEGARLPVLTP-------------NLK 205 (426)
Q Consensus 143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~----~~~~~l~~l~~-------------~~~ 205 (426)
..++.++.++.++.+.+.|+..|-+.+...|. ..+.+.+.+.++. .+++.+.++++ ..+
T Consensus 89 y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~----~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e 164 (371)
T PRK07360 89 FWLTIAEILEKAAEAVKRGATEVCIQGGLHPA----ADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEE 164 (371)
T ss_pred eeCCHHHHHHHHHHHHhCCCCEEEEccCCCCC----CCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHH
Confidence 35899999999999999999999987543332 2234444444443 35666666532 134
Q ss_pred hHHHHHHcCCCEEEEeccCChHH---Hhhh--c-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHH
Q 014369 206 GFEAAIAAGAKEVAIFASASEAF---SKSN--I-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV 279 (426)
Q Consensus 206 di~~a~~~Gv~~V~i~~~~Sd~~---~~~~--~-~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l 279 (426)
.+++..++|++.++- ...+.+ .++. - .++.++- .+.++.|+++|+++...+. +|. + -++++.
T Consensus 165 ~l~~LkeAGld~~~~--t~~e~l~~~vr~~i~p~~~s~~~~----l~~i~~a~~~Gl~~~sg~i--~G~---g-Et~edr 232 (371)
T PRK07360 165 VLKALKDAGLDSMPG--TAAEILVDEVRRIICPEKIKTAEW----IEIVKTAHKLGLPTTSTMM--YGH---V-ETPEHR 232 (371)
T ss_pred HHHHHHHcCCCcCCC--cchhhccHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCCceeeEE--eeC---C-CCHHHH
Confidence 688889999998851 111111 1111 1 2344433 5888899999999987666 442 1 256778
Q ss_pred HHHHHHHHhCCCCE------EEEc----CC-----CCC---CCHHHHHHHHHHHHHhcCC--ceEEEEeCCCcCcHHHHH
Q 014369 280 AYVAKELHDMGCFE------ISLG----DT-----IGV---GTPGTVVPMLEAVMAVVPV--EKLAVHLHDTYGQSLPNI 339 (426)
Q Consensus 280 ~~~~~~l~~~Gad~------I~l~----DT-----~G~---~~P~~v~~li~~l~~~~p~--~~i~~H~HNd~GlA~ANa 339 (426)
++.+..+.+++.+. |-++ +| ... ..|.+..++|+..|=.+|. ..|..-. ..+|. .-.
T Consensus 233 v~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~~~i~a~~-~~lg~--~~~ 309 (371)
T PRK07360 233 IDHLLILREIQQETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWIKNIQASW-VKLGL--KLA 309 (371)
T ss_pred HHHHHHHHHhchhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCCCCeeccc-eeeCH--HHH
Confidence 88787888876654 3221 33 211 3678888888888887886 3444433 34443 335
Q ss_pred HHHHHcCCCEEeecccC------CCCCCCCCCCCC-cccHHHHHHHHHhCCCCC
Q 014369 340 LISLQMGISTVDCSVAG------LGGCPYAKGASG-NVATEDVVYMLSGLGVET 386 (426)
Q Consensus 340 LaAl~aGa~~VD~Sv~G------lGecP~a~graG-Na~lEevv~~L~~lG~~~ 386 (426)
..++.+||+-+.+++.+ .|. ... ...++++..+++.+|...
T Consensus 310 ~~~l~~Gan~~~~~~~~~~v~~~~G~------~~~~~~~~~~~~~~i~~~G~~~ 357 (371)
T PRK07360 310 QVALNCGANDLGGTLMEEHITKMAGA------SGGTYMSVEELQWMIKSIGRIP 357 (371)
T ss_pred HHHHhcCCccCcCcCcccceecccCC------CCCCCCCHHHHHHHHHHcCCce
Confidence 66899999999988865 221 122 258899999999888753
No 63
>PRK15108 biotin synthase; Provisional
Probab=97.84 E-value=0.013 Score=59.95 Aligned_cols=219 Identities=12% Similarity=0.070 Sum_probs=141.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecC-CCCCccccccCHHHHHHHhHhcC--CCcEEEEe--CChhhHHHHHHcCCCEE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLE--GARLPVLT--PNLKGFEAAIAAGAKEV 218 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~~~v~~~i~~~~--~~~l~~l~--~~~~di~~a~~~Gv~~V 218 (426)
.++.++.++.++.+.+.|++.|=++.. ..|. ..+.+.+.+.++.++ ++.+.+-. -..+.++...++|++.+
T Consensus 75 ~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~----~~~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~ 150 (345)
T PRK15108 75 LMEVEQVLESARKAKAAGSTRFCMGAAWKNPH----ERDMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYY 150 (345)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEecCCCCC----cchHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEE
Confidence 479999999999999999999866532 2321 123455555555433 33332111 24678899999999999
Q ss_pred EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC--CCCEEEE
Q 014369 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM--GCFEISL 296 (426)
Q Consensus 219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~--Gad~I~l 296 (426)
.+.+-+++.+-. ++.. ...++...+.++.|++.|+.+...+. +|. +. ++++..+.+..+.++ ..+.|.+
T Consensus 151 n~~leT~p~~f~-~I~~--~~~~~~rl~~i~~a~~~G~~v~sg~i--~Gl---gE-t~ed~v~~~~~l~~l~~~~~~ip~ 221 (345)
T PRK15108 151 NHNLDTSPEFYG-NIIT--TRTYQERLDTLEKVRDAGIKVCSGGI--VGL---GE-TVKDRAGLLLQLANLPTPPESVPI 221 (345)
T ss_pred eeccccChHhcC-CCCC--CCCHHHHHHHHHHHHHcCCceeeEEE--EeC---CC-CHHHHHHHHHHHHhccCCCCEEEe
Confidence 998877654332 2211 12455566788899999998875555 553 22 467888888888888 4455543
Q ss_pred ------cCC----CCCCCHHHHHHHHHHHHHhcCCceEEEEe-CCCcCcHHHHHHHHHHcCCCEEeecccC-CCCCCCCC
Q 014369 297 ------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHL-HDTYGQSLPNILISLQMGISTVDCSVAG-LGGCPYAK 364 (426)
Q Consensus 297 ------~DT----~G~~~P~~v~~li~~l~~~~p~~~i~~H~-HNd~GlA~ANaLaAl~aGa~~VD~Sv~G-lGecP~a~ 364 (426)
+.| ...+.|.+..++|...|=.+|+..+-+-. -.+.| --....|+.+||+-+ -+.+ +=.
T Consensus 222 ~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~i~i~~g~~~~~--~~~~~~~l~~Gan~~--~~g~~~lt----- 292 (345)
T PRK15108 222 NMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMN--EQTQAMCFMAGANSI--FYGCKLLT----- 292 (345)
T ss_pred CCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecccHhHhC--hhhHHHHHHcCCcEE--EECCcccc-----
Confidence 455 12367889999999998888863232211 12222 234688999999987 2222 112
Q ss_pred CCCCcccHHHHHHHHHhCCCCC
Q 014369 365 GASGNVATEDVVYMLSGLGVET 386 (426)
Q Consensus 365 graGNa~lEevv~~L~~lG~~~ 386 (426)
..| .+.++.+.+++.+|..+
T Consensus 293 -t~g-~~~~~~~~~i~~~g~~~ 312 (345)
T PRK15108 293 -TPN-PEEDKDLQLFRKLGLNP 312 (345)
T ss_pred -CCC-CCHHHHHHHHHHcCCCc
Confidence 344 68899999999998864
No 64
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=97.80 E-value=0.0029 Score=65.38 Aligned_cols=223 Identities=12% Similarity=0.095 Sum_probs=134.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc----CCCcEEEEeCChhhHHHHHHcCCCEE
Q 014369 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL----EGARLPVLTPNLKGFEAAIAAGAKEV 218 (426)
Q Consensus 143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~----~~~~l~~l~~~~~di~~a~~~Gv~~V 218 (426)
..++.++.++.++.+.+.|+..|-+...-.|. ..+.+.+.+.++.+ +.+.+.+..-+.+.++...++|++.+
T Consensus 102 ~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~----~~~~e~l~~~i~~Ik~~~p~i~i~~g~lt~e~l~~Lk~aGv~r~ 177 (371)
T PRK09240 102 KTLDEEEIEREMAAIKKLGFEHILLLTGEHEA----KVGVDYIRRALPIAREYFSSVSIEVQPLSEEEYAELVELGLDGV 177 (371)
T ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCC----CCCHHHHHHHHHHHHHhCCCceeccCCCCHHHHHHHHHcCCCEE
Confidence 46799999999999999999998775432221 13455565555543 33444333235788999999999999
Q ss_pred EEeccCC-hHHHhhhc--CCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCC---
Q 014369 219 AIFASAS-EAFSKSNI--NCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC--- 291 (426)
Q Consensus 219 ~i~~~~S-d~~~~~~~--~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Ga--- 291 (426)
.+..-+. +.+.+.-. |. ....+...+.++.|++.|++ |..-++ +|.++ +.+...+++..+.+++.
T Consensus 178 ~i~lET~~~~~~~~i~~~g~--~h~~~~rl~~i~~a~~aG~~~v~~g~i--~Glge----~~~d~~~~a~~l~~L~~~~~ 249 (371)
T PRK09240 178 TVYQETYNPATYAKHHLRGP--KRDFEYRLETPERAGRAGIRKIGLGAL--LGLSD----WRTDALMTALHLRYLQRKYW 249 (371)
T ss_pred EEEEecCCHHHHHHhCcCCC--CCCHHHHHHHHHHHHHcCCCeeceEEE--ecCCc----cHHHHHHHHHHHHHHHHhCC
Confidence 9998774 43322221 22 11234445677889999996 665455 45433 24555555554444432
Q ss_pred ---CEEE---EcCCCC------CCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHH---HHHHHHHHcCCCEEeecccC
Q 014369 292 ---FEIS---LGDTIG------VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL---PNILISLQMGISTVDCSVAG 356 (426)
Q Consensus 292 ---d~I~---l~DT~G------~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~---ANaLaAl~aGa~~VD~Sv~G 356 (426)
..|. |-...| .++|.++.++|..+|-.+|...|.+-+-....+.- ..-..++.|| --+.++|
T Consensus 250 ~~~~sv~~~~l~P~~g~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g~~~~lrd~~~~~~~~~~~ag---~~~~~G~ 326 (371)
T PRK09240 250 QAEYSISFPRLRPCTGGIEPASIVSDKQLVQLICAFRLFLPDVEISLSTRESPEFRDNLIPLGITKMSAG---SSTQPGG 326 (371)
T ss_pred CCceeeecCccccCCCCCCCCCCCCHHHHHHHHHHHHHHCcccccEEecCCCHHHHHHHHhhcceeeccC---ccCCCCC
Confidence 2343 444444 25788999999999988897666665544322211 1112233343 1234444
Q ss_pred CCCCCCCCCC-C--------CcccHHHHHHHHHhCCCCC
Q 014369 357 LGGCPYAKGA-S--------GNVATEDVVYMLSGLGVET 386 (426)
Q Consensus 357 lGecP~a~gr-a--------GNa~lEevv~~L~~lG~~~ 386 (426)
+.. . . -.-++++.+.+|+.+|+++
T Consensus 327 y~~------~~~~~~qf~~~~~r~~~~~~~~i~~~g~~~ 359 (371)
T PRK09240 327 YAD------DHKELEQFEISDDRSVEEVAAALRAKGLQP 359 (371)
T ss_pred cCC------CCCCcCCccCCCCCCHHHHHHHHHHCCCee
Confidence 443 1 1 2468899999999999875
No 65
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.73 E-value=0.0012 Score=62.01 Aligned_cols=168 Identities=18% Similarity=0.213 Sum_probs=102.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-CCCcEEE----EeCChhhHHHHHHcCCCEE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPV----LTPNLKGFEAAIAAGAKEV 218 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~----l~~~~~di~~a~~~Gv~~V 218 (426)
.++.++-+++++.| +-|++.||+|++.... ...+.++.+++. ++..+.+ +.+....++.+.++|++.|
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~------~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i 80 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVDIIEIGTPLIKN------EGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIV 80 (206)
T ss_pred CCCHHHHHHHHHHc-ccCeeEEEeCCHHHHH------hCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEE
Confidence 35788889999999 8899999998532211 112345555533 4433332 1222346899999999988
Q ss_pred EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-
Q 014369 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG- 297 (426)
Q Consensus 219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~- 297 (426)
-+..-..+ ..+.+++++++++|+++.+.+.. | .+ ..+.++.+.+.|+|.|.+.
T Consensus 81 ~vh~~~~~---------------~~~~~~i~~~~~~g~~~~~~~~~----~----~t---~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 81 TVLGVADD---------------ATIKGAVKAAKKHGKEVQVDLIN----V----KD---KVKRAKELKELGADYIGVHT 134 (206)
T ss_pred EEeccCCH---------------HHHHHHHHHHHHcCCEEEEEecC----C----CC---hHHHHHHHHHcCCCEEEEcC
Confidence 76543221 23457788899999988754321 1 11 2233445567899988774
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369 298 ----DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 352 (426)
Q Consensus 298 ----DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~ 352 (426)
++.+...+ +.++.+++.++..+|.+= =|-...|.-..+++||+.|-+
T Consensus 135 g~~~~~~~~~~~----~~i~~l~~~~~~~~i~v~----GGI~~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 135 GLDEQAKGQNPF----EDLQTILKLVKEARVAVA----GGINLDTIPDVIKLGPDIVIV 185 (206)
T ss_pred CcCcccCCCCCH----HHHHHHHHhcCCCcEEEE----CCcCHHHHHHHHHcCCCEEEE
Confidence 22222233 345555555554344432 355567888889999997743
No 66
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.71 E-value=0.0048 Score=59.12 Aligned_cols=151 Identities=23% Similarity=0.311 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hc---CCCcEEEEe-CChhhHHHHHHcCCCEEEE
Q 014369 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DL---EGARLPVLT-PNLKGFEAAIAAGAKEVAI 220 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~---~~~~l~~l~-~~~~di~~a~~~Gv~~V~i 220 (426)
+.++-+.+++.|.+.|++.||+++- +|. ..+.++.++ .. |++.+.+-+ -+.++++.|+++|.+.+.-
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~-~~~-------a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fivs 94 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYT-NPF-------ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVS 94 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECC-Ccc-------HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEEC
Confidence 7889999999999999999999974 332 345555554 33 245555543 5789999999999997652
Q ss_pred eccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--cC
Q 014369 221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL--GD 298 (426)
Q Consensus 221 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l--~D 298 (426)
. ..+ .+++++|+++|+.+. | +-.+|.++.. +.++|+|.|.+ ++
T Consensus 95 P-~~~-------------------~~v~~~~~~~~i~~i---------P--G~~T~~E~~~----A~~~Gad~vklFPa~ 139 (213)
T PRK06552 95 P-SFN-------------------RETAKICNLYQIPYL---------P--GCMTVTEIVT----ALEAGSEIVKLFPGS 139 (213)
T ss_pred C-CCC-------------------HHHHHHHHHcCCCEE---------C--CcCCHHHHHH----HHHcCCCEEEECCcc
Confidence 2 111 378889999999765 2 3345666544 34799999998 34
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 299 TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 299 T~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
..| |. +++.++..+|..+|.. +=|.-..|+-.-+.+|++.|
T Consensus 140 ~~G---~~----~ik~l~~~~p~ip~~a----tGGI~~~N~~~~l~aGa~~v 180 (213)
T PRK06552 140 TLG---PS----FIKAIKGPLPQVNVMV----TGGVNLDNVKDWFAAGADAV 180 (213)
T ss_pred cCC---HH----HHHHHhhhCCCCEEEE----ECCCCHHHHHHHHHCCCcEE
Confidence 433 33 4666777777655543 34777899999999999976
No 67
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.69 E-value=0.0037 Score=63.97 Aligned_cols=207 Identities=14% Similarity=0.137 Sum_probs=135.6
Q ss_pred cccCCCCCC--CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh----cCCCcEEEEe---CChh
Q 014369 135 RDGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD----LEGARLPVLT---PNLK 205 (426)
Q Consensus 135 RDG~Q~~~~--~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~----~~~~~l~~l~---~~~~ 205 (426)
|++.+..+. .+..++...++++-.+.+.++|=-.++..-++.+ .+.+...++. .+.+.+.... ...+
T Consensus 14 ~~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g----~~~~~~~~~~~a~~~~~VPValHLDHg~~~e 89 (347)
T PRK09196 14 AEHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGARKYAG----EPFLRHLILAAVEEYPHIPVVMHQDHGNSPA 89 (347)
T ss_pred HHcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCC----HHHHHHHHHHHHHhCCCCcEEEECCCCCCHH
Confidence 344444433 5788999999999999999986655443322221 1222223332 2224444443 3578
Q ss_pred hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC-------C--------
Q 014369 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-------V-------- 270 (426)
Q Consensus 206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p-------d-------- 270 (426)
.+..|+++|...|.+=.| ... ..+...+.+|+++..++++++|+..|+.|++-|-..-|.+ +
T Consensus 90 ~i~~ai~~GftSVMiDgS--~l~-~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~ 166 (347)
T PRK09196 90 TCQRAIQLGFTSVMMDGS--LKA-DGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKL 166 (347)
T ss_pred HHHHHHHcCCCEEEecCC--CCc-ccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCccccccc
Confidence 899999999998887443 211 1223447899999999999999999999998887653332 1
Q ss_pred ---CCCCCHHHHHHHHHHHHhCCCCEEEEc--CCCCCC----CHH---HHHHHHHHHHHhcCCceEEEEeCCCc------
Q 014369 271 ---EGAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG----TPG---TVVPMLEAVMAVVPVEKLAVHLHDTY------ 332 (426)
Q Consensus 271 ---~~r~~~~~l~~~~~~l~~~Gad~I~l~--DT~G~~----~P~---~v~~li~~l~~~~p~~~i~~H~HNd~------ 332 (426)
...++|+...++++ +.|+|.+.++ -.=|.- .|. ==.++++.+++.+|++||.+|+=...
T Consensus 167 ~~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~ 243 (347)
T PRK09196 167 SHDQLLTDPEEAADFVK---KTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLD 243 (347)
T ss_pred chhhcCCCHHHHHHHHH---HhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHH
Confidence 11467877666654 6788855443 233333 242 11346788888886678999986644
Q ss_pred -------------CcHHHHHHHHHHcCCCEEe
Q 014369 333 -------------GQSLPNILISLQMGISTVD 351 (426)
Q Consensus 333 -------------GlA~ANaLaAl~aGa~~VD 351 (426)
|........|++.|+.-|+
T Consensus 244 ~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KIN 275 (347)
T PRK09196 244 IINEYGGDMPETYGVPVEEIQEGIKHGVRKVN 275 (347)
T ss_pred HHHHhcCCccccCCCCHHHHHHHHHCCCceEE
Confidence 7788999999999998774
No 68
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=97.69 E-value=0.0047 Score=63.69 Aligned_cols=227 Identities=13% Similarity=0.099 Sum_probs=130.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc----CCCcEEEEeCChhhHHHHHHcCCCEE
Q 014369 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL----EGARLPVLTPNLKGFEAAIAAGAKEV 218 (426)
Q Consensus 143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~----~~~~l~~l~~~~~di~~a~~~Gv~~V 218 (426)
..++.++.++.++.+.+.|+..|=+...-.|. ..+.+.+.+.++.+ +.+.+.+..-+.++++...++|++.+
T Consensus 101 ~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~----~~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~~~Lk~aGv~r~ 176 (366)
T TIGR02351 101 KKLNEEEIEREIEAIKKSGFKEILLVTGESEK----AAGVEYIAEAIKLAREYFSSLAIEVQPLNEEEYKKLVEAGLDGV 176 (366)
T ss_pred CcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCC----CCCHHHHHHHHHHHHHhCCccccccccCCHHHHHHHHHcCCCEE
Confidence 35799999999999999999987765332322 23455566666543 23333322236788999999999999
Q ss_pred EEeccCChHHHhhhcC-CCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHh------CC
Q 014369 219 AIFASASEAFSKSNIN-CSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHD------MG 290 (426)
Q Consensus 219 ~i~~~~Sd~~~~~~~~-~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~------~G 290 (426)
.+..-+.+.-...++. ..+....+...+.++.|++.|++ |..-+. +|.+. .+.+.-.++..++.|.. ..
T Consensus 177 ~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i--~Gl~e-~~~d~~~~a~~l~~L~~~~~~~~~s 253 (366)
T TIGR02351 177 TVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGAL--LGLDD-WRTDAFFTAYHLRYLQKKYWKTEIS 253 (366)
T ss_pred EEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEE--EeCch-hHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 9998765322222222 01112234445678889999997 665444 55543 22222233333333433 11
Q ss_pred CCEEEEcCC------CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe----ecccCCCCC
Q 014369 291 CFEISLGDT------IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD----CSVAGLGGC 360 (426)
Q Consensus 291 ad~I~l~DT------~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD----~Sv~GlGec 360 (426)
+....|-.. ...++|.++.++|..+|-.+|...|-+-+-..--+. +. .+..|+..+. +.++|+-.
T Consensus 254 v~~~~l~P~~g~~~~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~~~lr--d~--~~~~~~~~~~a~~~~~~G~y~~- 328 (366)
T TIGR02351 254 ISVPRLRPCTNGLKPKVIVTDRELVQIICAYRLFDPFVEISLSTRESKKFR--DN--VIPLGITKMSAGSSTEPGGYSS- 328 (366)
T ss_pred ccccccccCCCCCCCCCcCCHHHHHHHHHHHHHhCcccccEEecCCCHHHH--HH--HHhhcceeeccCcccCCCCcCC-
Confidence 222223322 245678999999999999899766666554432111 11 1122322221 12334333
Q ss_pred CCCCCCCC---------cccHHHHHHHHHhCCCCC
Q 014369 361 PYAKGASG---------NVATEDVVYMLSGLGVET 386 (426)
Q Consensus 361 P~a~graG---------Na~lEevv~~L~~lG~~~ 386 (426)
..| +-++++++.+|+.+|+.+
T Consensus 329 -----~~~~~~qf~~~d~r~~~~~~~~i~~~g~~~ 358 (366)
T TIGR02351 329 -----EKKGLEQFEISDERSVAEVEEDLRSKGLQP 358 (366)
T ss_pred -----CCCCcCcccCCCCCCHHHHHHHHHHCCCee
Confidence 233 378899999999998875
No 69
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=97.67 E-value=0.03 Score=55.37 Aligned_cols=217 Identities=12% Similarity=0.041 Sum_probs=131.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEE---ecCCCCCccccccCHHHHHHHhHh-c--CCCcEEEEe--CChhhHHHHHHcCC
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEA---TSFVSPKWVPQLADARDVMEAVRD-L--EGARLPVLT--PNLKGFEAAIAAGA 215 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEv---G~~~s~~~~p~~~D~~~v~~~i~~-~--~~~~l~~l~--~~~~di~~a~~~Gv 215 (426)
..+.++.++.++.+.+.|+..+-+ |+...+ .+..++++.+.+ . .++++.+-. .+.+.++...++|+
T Consensus 61 ~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~------~~~~~~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~ 134 (296)
T TIGR00433 61 LKKVDEVLEEARKAKAAGATRFCLVASGRGPKD------REFMEYVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGL 134 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEecCCCCh------HHHHHHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCC
Confidence 356788888999999999987543 222221 121233333321 1 244432221 24677888899999
Q ss_pred CEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 014369 216 KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS 295 (426)
Q Consensus 216 ~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~ 295 (426)
+.|.+.+-.++...+ +++. ...++...++++.+++.|+.+.+.++ +|. .. +.+.+.+.++.+.+.|++.|.
T Consensus 135 ~~v~i~~E~~~~~~~-~i~~--~~s~~~~~~ai~~l~~~Gi~v~~~~i--~Gl-~e---t~~d~~~~~~~l~~l~~~~i~ 205 (296)
T TIGR00433 135 DYYNHNLDTSQEFYS-NIIS--THTYDDRVDTLENAKKAGLKVCSGGI--FGL-GE---TVEDRIGLALALANLPPESVP 205 (296)
T ss_pred CEEEEcccCCHHHHh-hccC--CCCHHHHHHHHHHHHHcCCEEEEeEE--EeC-CC---CHHHHHHHHHHHHhCCCCEEE
Confidence 999888765553322 2222 12455566788889999999887665 453 22 467888888889999988664
Q ss_pred E------cCCC----CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCC
Q 014369 296 L------GDTI----GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKG 365 (426)
Q Consensus 296 l------~DT~----G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~g 365 (426)
+ +.|. ...++++..+++...+..+|...|.+=+=--.-+.---...|+.+||+.+=+ +|+=-
T Consensus 206 l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~--g~~~~------ 277 (296)
T TIGR00433 206 INFLVKIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANSIFV--GDYLT------ 277 (296)
T ss_pred eeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCceEEE--cCccc------
Confidence 2 2441 2345578888899988888864453211111112211123479999997653 44444
Q ss_pred CCCcccHHHHHHHHHhCC
Q 014369 366 ASGNVATEDVVYMLSGLG 383 (426)
Q Consensus 366 raGNa~lEevv~~L~~lG 383 (426)
..|+..-++=+.+++++|
T Consensus 278 ~~g~~~~~~~~~~~~~~~ 295 (296)
T TIGR00433 278 TTGNPEEDKDKKLLAKLG 295 (296)
T ss_pred CCCCCCcHHHHHHHHHcC
Confidence 578888844455777665
No 70
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.63 E-value=0.0048 Score=60.80 Aligned_cols=148 Identities=20% Similarity=0.195 Sum_probs=94.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--cc--ccc---------CHHHHHHHhHhc----CCCcEEEEeC-Ch-
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKW--VP--QLA---------DARDVMEAVRDL----EGARLPVLTP-NL- 204 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--~p--~~~---------D~~~v~~~i~~~----~~~~l~~l~~-~~- 204 (426)
.-+.+.-+++++.|.+.|++.||+|+|.+.+. .| |.+ +.+.+++.++++ +++.+..|+. |.
T Consensus 22 ~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i 101 (258)
T PRK13111 22 DPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPI 101 (258)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHH
Confidence 34778889999999999999999999865321 12 111 223445555432 3456556652 42
Q ss_pred ------hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH
Q 014369 205 ------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK 278 (426)
Q Consensus 205 ------~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~ 278 (426)
+-++.+.++|++.+.+.. .. ++.+.+.++.++++|+....-+ .| .++++.
T Consensus 102 ~~~G~e~f~~~~~~aGvdGviipD------------Lp----~ee~~~~~~~~~~~gl~~I~lv-----ap---~t~~er 157 (258)
T PRK13111 102 FQYGVERFAADAAEAGVDGLIIPD------------LP----PEEAEELRAAAKKHGLDLIFLV-----AP---TTTDER 157 (258)
T ss_pred hhcCHHHHHHHHHHcCCcEEEECC------------CC----HHHHHHHHHHHHHcCCcEEEEe-----CC---CCCHHH
Confidence 236788899999998852 11 4567788999999999875211 22 234556
Q ss_pred HHHHHHHHHhCCCCEEEE---cCCCCC--CCHHHHHHHHHHHHHhc
Q 014369 279 VAYVAKELHDMGCFEISL---GDTIGV--GTPGTVVPMLEAVMAVV 319 (426)
Q Consensus 279 l~~~~~~l~~~Gad~I~l---~DT~G~--~~P~~v~~li~~l~~~~ 319 (426)
+..+++. .-.-||+ .-++|. ..|..+.++++.+++..
T Consensus 158 i~~i~~~----s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~ 199 (258)
T PRK13111 158 LKKIASH----ASGFVYYVSRAGVTGARSADAADLAELVARLKAHT 199 (258)
T ss_pred HHHHHHh----CCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC
Confidence 5555543 3334444 444555 56788999999999865
No 71
>PRK08444 hypothetical protein; Provisional
Probab=97.63 E-value=0.0059 Score=62.81 Aligned_cols=229 Identities=14% Similarity=0.166 Sum_probs=141.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeCC-------------hhhHH
Q 014369 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPN-------------LKGFE 208 (426)
Q Consensus 143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~~-------------~~di~ 208 (426)
..++.++.++.++.+.+.|+..|-+-+...|+. .+....++++.++ ..|++.+.++++. .+-++
T Consensus 78 y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~--~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~ 155 (353)
T PRK08444 78 YTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNY--GYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLE 155 (353)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCC--CHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHH
Confidence 358999999999999999999988865444432 1112234445555 3477888886542 24467
Q ss_pred HHHHcCCCEEEEeccCChHHH---hhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369 209 AAIAAGAKEVAIFASASEAFS---KSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (426)
Q Consensus 209 ~a~~~Gv~~V~i~~~~Sd~~~---~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~ 285 (426)
+..++|++.+.- ..-+++. +.++ ++....-++..++.+.|+++|+++...++ ||-. -++++.++.+..
T Consensus 156 ~LkeAGl~~~~g--~~aEi~~~~vr~~I-~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l--~G~g----Et~edrv~hl~~ 226 (353)
T PRK08444 156 DMLEYGVDSMPG--GGAEIFDEEVRKKI-CKGKVSSERWLEIHKYWHKKGKMSNATML--FGHI----ENREHRIDHMLR 226 (353)
T ss_pred HHHHhCcccCCC--CCchhcCHHHHhhh-CCCCCCHHHHHHHHHHHHHcCCCccceeE--EecC----CCHHHHHHHHHH
Confidence 888999986542 1112221 1111 11112234556778899999999987777 4433 245666666666
Q ss_pred HHhCCCC-----E-EEE----cCCC----CCCCHHHHHHHHHHHHHhcCCceEEEEeCCC-cCcHHHHHHHHHHcCCCEE
Q 014369 286 LHDMGCF-----E-ISL----GDTI----GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDT-YGQSLPNILISLQMGISTV 350 (426)
Q Consensus 286 l~~~Gad-----~-I~l----~DT~----G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd-~GlA~ANaLaAl~aGa~~V 350 (426)
+.+...+ . |-+ .+|- ...+|.+..++++..|-.+|+. -|..-. .-++...+..|+..||+-+
T Consensus 227 Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L~~i---~ni~a~w~~~g~~~~q~~L~~Ga~D~ 303 (353)
T PRK08444 227 LRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISRILLDNI---PHIKAYWATLTLNLALVAQEFGANDL 303 (353)
T ss_pred HHHhccccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhcCCC---CccccccccCcHHHHHHHHhcCCccC
Confidence 6665432 2 223 3442 2477888888888887766652 122222 2256788899999999999
Q ss_pred eecccCCCCCCCCCCCCC-cccHHHHHHHHHhCCCC
Q 014369 351 DCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVE 385 (426)
Q Consensus 351 D~Sv~GlGecP~a~graG-Na~lEevv~~L~~lG~~ 385 (426)
++|+..====|.|+...+ ..+.++++.+++..|..
T Consensus 304 ggt~~~e~i~~~ag~~~~~~~~~~~l~~~i~~~g~~ 339 (353)
T PRK08444 304 DGTIEKESIQSAAGAKSANGLSLEDFIFLIKDSGFI 339 (353)
T ss_pred ccccccccchhhccCCCCCCCCHHHHHHHHHHcCCC
Confidence 999843111112221233 46789999999888764
No 72
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=97.62 E-value=0.0097 Score=60.34 Aligned_cols=194 Identities=15% Similarity=0.180 Sum_probs=132.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cC----CCcEEEEe---CChhhHHHHHHcCC
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LE----GARLPVLT---PNLKGFEAAIAAGA 215 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~----~~~l~~l~---~~~~di~~a~~~Gv 215 (426)
....+....++++-.+.+-++|=-.++..-++.+. .-.+.+...++. .. .+.+.... ...+.+.+|+++|.
T Consensus 31 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~-~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~Gf 109 (321)
T PRK07084 31 FNNMEQLQAIIQACVETKSPVILQVSKGARKYANA-TLLRYMAQGAVEYAKELGCPIPIVLHLDHGDSFELCKDCIDSGF 109 (321)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCc-hHHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCC
Confidence 46888889999999999999876655432222211 001222322222 11 23344433 35788999999999
Q ss_pred CEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC------CCCCHHHHHHHHHHHHhC
Q 014369 216 KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------GAIPPSKVAYVAKELHDM 289 (426)
Q Consensus 216 ~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~------~r~~~~~l~~~~~~l~~~ 289 (426)
..|.+=.|. .+.+++++.-++++++|+.+|+.|++-+-.+-|.++. ..++|+...++++ +.
T Consensus 110 tSVMiD~S~----------lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~---~T 176 (321)
T PRK07084 110 SSVMIDGSH----------LPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVK---KT 176 (321)
T ss_pred CEEEeeCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHH---Hh
Confidence 988885442 3678999999999999999999999888876554443 1467888777665 47
Q ss_pred CCCEEEEc--CCCCCC-------CHHHHHHHHHHHHHhcCCceEEEEeCC-------------------CcCcHHHHHHH
Q 014369 290 GCFEISLG--DTIGVG-------TPGTVVPMLEAVMAVVPVEKLAVHLHD-------------------TYGQSLPNILI 341 (426)
Q Consensus 290 Gad~I~l~--DT~G~~-------~P~~v~~li~~l~~~~p~~~i~~H~HN-------------------d~GlA~ANaLa 341 (426)
|+|.+.++ -.=|.- .|.==-++++.+++.++++||.+|+=. ++|..-.....
T Consensus 177 gvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~k 256 (321)
T PRK07084 177 GVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLRK 256 (321)
T ss_pred CCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHHHH
Confidence 88855443 233332 233335678888888865689999877 44888999999
Q ss_pred HHHcCCCEEe
Q 014369 342 SLQMGISTVD 351 (426)
Q Consensus 342 Al~aGa~~VD 351 (426)
|+..|+.-|+
T Consensus 257 ai~~GI~KIN 266 (321)
T PRK07084 257 AAKSAVCKIN 266 (321)
T ss_pred HHHcCCceec
Confidence 9999988663
No 73
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=97.61 E-value=0.0039 Score=60.64 Aligned_cols=173 Identities=18% Similarity=0.228 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEecCCCCCc-----ccccc-----------CHHHHHHHhHhcCCCcEEEEeC-C-----
Q 014369 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKW-----VPQLA-----------DARDVMEAVRDLEGARLPVLTP-N----- 203 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~-----~p~~~-----------D~~~v~~~i~~~~~~~l~~l~~-~----- 203 (426)
+.+.-.++++.|.++|++.||+|+|.+.+. +++.. ...++++.+++..++.+..|+. |
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~ 91 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY 91 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh
Confidence 557778999999999999999998754221 12110 1222333333222445555554 4
Q ss_pred --hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369 204 --LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 281 (426)
Q Consensus 204 --~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~ 281 (426)
.+-++.+.++|++.+-+.. .+ ++...++++++|++|++....+. | .++.+.+..
T Consensus 92 G~~~fi~~~~~aG~~giiipD----l~------------~ee~~~~~~~~~~~g~~~i~~i~-----P---~T~~~~i~~ 147 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIPD----LP------------PEEAEEFREAAKEYGLDLIFLVA-----P---TTPDERIKK 147 (242)
T ss_pred CHHHHHHHHHHCCCcEEEECC----CC------------HHHHHHHHHHHHHcCCcEEEEeC-----C---CCCHHHHHH
Confidence 2346788899999887752 11 23567889999999998763232 2 234555555
Q ss_pred HHHHHHhCC-CCEEEEcCCCCCCC--HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHH-HHHHHHHcCCCEE
Q 014369 282 VAKELHDMG-CFEISLGDTIGVGT--PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP-NILISLQMGISTV 350 (426)
Q Consensus 282 ~~~~l~~~G-ad~I~l~DT~G~~~--P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~A-NaLaAl~aGa~~V 350 (426)
+++. ..| +..+.+.-+.|.-+ +..+.+.++.+++.. ..+|.+ +.|.-.. |+-..+++ ||.+
T Consensus 148 i~~~--~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~-~~pI~v----ggGI~~~e~~~~~~~~-ADgv 212 (242)
T cd04724 148 IAEL--ASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT-DLPIAV----GFGISTPEQAAEVAKY-ADGV 212 (242)
T ss_pred HHhh--CCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC-CCcEEE----EccCCCHHHHHHHHcc-CCEE
Confidence 4432 122 23344455666543 577889999999863 345655 5566645 66666666 7754
No 74
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=97.58 E-value=0.025 Score=60.28 Aligned_cols=229 Identities=15% Similarity=0.197 Sum_probs=139.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCC-------C-cEEE-Ee-CChhhHHHHHH
Q 014369 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEG-------A-RLPV-LT-PNLKGFEAAIA 212 (426)
Q Consensus 143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~-------~-~l~~-l~-~~~~di~~a~~ 212 (426)
..++.++.++-++.+.+.|++.+=+-+.-.|.. .+.+.+.+.++.+.. . ++.+ +. .+.++++...+
T Consensus 113 ~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~----~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~Lke 188 (469)
T PRK09613 113 KKLTQEEIREEVKALEDMGHKRLALVAGEDPPN----CDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKE 188 (469)
T ss_pred eECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCC----CCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHH
Confidence 367999999999999999999887754333221 245555555554322 1 2222 12 36789999999
Q ss_pred cCCCEEEEeccCCh--HHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHH--
Q 014369 213 AGAKEVAIFASASE--AFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELH-- 287 (426)
Q Consensus 213 ~Gv~~V~i~~~~Sd--~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~-- 287 (426)
+|++.+.++.-+.+ .+.+...+.+ ....+.=.+.++.|++.|++ |..-+. ||.++ .+.+.-.++..++.|.
T Consensus 189 aGv~~~~l~qETY~~ety~~~hp~g~-k~~y~~Rl~t~~rA~~aGi~~Vg~G~L--~GLge-~~~E~~~l~~hl~~L~~~ 264 (469)
T PRK09613 189 AGIGTYQLFQETYHKPTYEKMHPSGP-KSDYDWRLTAMDRAMEAGIDDVGIGVL--FGLYD-YKFEVLGLLMHAEHLEER 264 (469)
T ss_pred cCCCEEEeccccCCHHHHHhcCCCCC-CCCHHHHHHHHHHHHHcCCCeeCeEEE--EcCCC-CHHHHHHHHHHHHHHHHh
Confidence 99999999976532 2222222211 11223334677789999997 764443 66554 2222222222233332
Q ss_pred -hCCCCEEEEc------CC-C----CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc-
Q 014369 288 -DMGCFEISLG------DT-I----GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV- 354 (426)
Q Consensus 288 -~~Gad~I~l~------DT-~----G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv- 354 (426)
..|++.|.++ +| . -...+.++.++|..+|=.+|...|.+=.+..-.+ = -..+..|++.+++..
T Consensus 265 ~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lStRE~~~~--r--~~~~~~gvt~~sags~ 340 (469)
T PRK09613 265 FGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILSTRESAEL--R--REVLELGVSQISAGSR 340 (469)
T ss_pred hCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeecCCCHHH--H--HHHHhhcceeeccccc
Confidence 2366766654 44 2 2357789999999999999977777777777442 2 234566999885322
Q ss_pred cCCCCCCCCCC----------CCCcccHHHHHHHHHhCCCC
Q 014369 355 AGLGGCPYAKG----------ASGNVATEDVVYMLSGLGVE 385 (426)
Q Consensus 355 ~GlGecP~a~g----------raGNa~lEevv~~L~~lG~~ 385 (426)
.|+|+ |+.. -.=+-++++|+..|...|+.
T Consensus 341 t~~gg--y~~~~~~~~~~QF~~~d~r~~~ev~~~l~~~g~~ 379 (469)
T PRK09613 341 TGVGG--YSEEEEEEEKAQFELGDHRSLDEVIRELCEMGYI 379 (469)
T ss_pred CCCCC--cCCCCCCCCCCCccCCCCCCHHHHHHHHHHCCCe
Confidence 24444 2211 02356889999999877764
No 75
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.58 E-value=0.0065 Score=56.59 Aligned_cols=165 Identities=20% Similarity=0.169 Sum_probs=103.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEEEe----CChhhHHHHHHcCCCEE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLT----PNLKGFEAAIAAGAKEV 218 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~----~~~~di~~a~~~Gv~~V 218 (426)
..+.++-+++++.|.+. ++.||+|.+... ....+.++.+++ .++..+.+.. +....++.+.++|++.+
T Consensus 9 ~~~~~~~~~~~~~l~~~-i~~ieig~~~~~------~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i 81 (202)
T cd04726 9 LLDLEEALELAKKVPDG-VDIIEAGTPLIK------SEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIV 81 (202)
T ss_pred CCCHHHHHHHHHHhhhc-CCEEEcCCHHHH------HhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEE
Confidence 35788889999999999 999999954311 111344555554 3565554421 22345788999999988
Q ss_pred EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-c
Q 014369 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL-G 297 (426)
Q Consensus 219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l-~ 297 (426)
.+.....+ +.+.+++++++++|+++.+.+. +..+++.+.+ +...|+|.+.+ +
T Consensus 82 ~~h~~~~~---------------~~~~~~i~~~~~~g~~~~v~~~--------~~~t~~e~~~----~~~~~~d~v~~~~ 134 (202)
T cd04726 82 TVLGAAPL---------------STIKKAVKAAKKYGKEVQVDLI--------GVEDPEKRAK----LLKLGVDIVILHR 134 (202)
T ss_pred EEEeeCCH---------------HHHHHHHHHHHHcCCeEEEEEe--------CCCCHHHHHH----HHHCCCCEEEEcC
Confidence 88654321 2345778889999987764322 2234555443 55679998877 2
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 298 ----DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 298 ----DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
.+.| .....+.++.+++. +..++.+=+ |-...|.-.++++||+.|
T Consensus 135 ~~~~~~~~---~~~~~~~i~~~~~~-~~~~i~~~G----GI~~~~i~~~~~~Gad~v 183 (202)
T cd04726 135 GIDAQAAG---GWWPEDDLKKVKKL-LGVKVAVAG----GITPDTLPEFKKAGADIV 183 (202)
T ss_pred cccccccC---CCCCHHHHHHHHhh-cCCCEEEEC----CcCHHHHHHHHhcCCCEE
Confidence 2332 12233445555543 333455533 555689999999999966
No 76
>PRK08185 hypothetical protein; Provisional
Probab=97.57 E-value=0.017 Score=57.77 Aligned_cols=193 Identities=15% Similarity=0.161 Sum_probs=127.1
Q ss_pred ccCCCCCC--CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh---cCCCcEEEEe---CChhhH
Q 014369 136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LEGARLPVLT---PNLKGF 207 (426)
Q Consensus 136 DG~Q~~~~--~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~---~~~~di 207 (426)
++.+..+. .++.++...++++-.+.+.++|=-.++..-++.+ .++...++. ...+.+.... .+.+.+
T Consensus 10 ~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~-----~~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i 84 (283)
T PRK08185 10 EHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLG-----DNFFAYVRERAKRSPVPFVIHLDHGATIEDV 84 (283)
T ss_pred HcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhcc-----HHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence 34444433 5788999999999999999987766554323222 123333332 2234444433 357899
Q ss_pred HHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC---------CCCHHH
Q 014369 208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG---------AIPPSK 278 (426)
Q Consensus 208 ~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~---------r~~~~~ 278 (426)
+.|++.|++.|.+=-| + .+.++.++..++++++|+..|+.|++.+-. +|....+ .++|+.
T Consensus 85 ~~ai~~Gf~SVM~D~S--~--------l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~-vg~~e~~~~~~~~~~~~t~pee 153 (283)
T PRK08185 85 MRAIRCGFTSVMIDGS--L--------LPYEENVALTKEVVELAHKVGVSVEGELGT-IGNTGTSIEGGVSEIIYTDPEQ 153 (283)
T ss_pred HHHHHcCCCEEEEeCC--C--------CCHHHHHHHHHHHHHHHHHcCCeEEEEEee-ccCcccccccccccccCCCHHH
Confidence 9999999998777433 2 467899999999999999999999988866 4332111 346666
Q ss_pred HHHHHHHHHhCCCCEEEEc-CCCCCC-----CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 279 VAYVAKELHDMGCFEISLG-DTIGVG-----TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 279 l~~~~~~l~~~Gad~I~l~-DT~G~~-----~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
..++++ +.|+|.+.++ -|++.. .|.---++++.+++.++ +||.+|+--.. .-.....|+..|+.-|
T Consensus 154 a~~f~~---~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~-iPLVlHGgsg~--~~e~~~~ai~~GI~Ki 225 (283)
T PRK08185 154 AEDFVS---RTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVD-IPLVLHGGSAN--PDAEIAESVQLGVGKI 225 (283)
T ss_pred HHHHHH---hhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhC-CCEEEECCCCC--CHHHHHHHHHCCCeEE
Confidence 555443 4589977761 222222 23333667778877765 47888876655 4778899999998855
No 77
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.57 E-value=0.0046 Score=59.21 Aligned_cols=148 Identities=26% Similarity=0.271 Sum_probs=105.0
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEE-eCChhhHHHHHHcCCCEEEEec
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVL-TPNLKGFEAAIAAGAKEVAIFA 222 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l-~~~~~di~~a~~~Gv~~V~i~~ 222 (426)
.+.++-+++++.|.+.|++.||+++ ..+. ..+.++.++ ..|+..+.+- +-+.++++.+.++|++.+....
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl-~~~~-------~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~ 95 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTL-RTPA-------ALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG 95 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec-CCcc-------HHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC
Confidence 4788999999999999999999994 3332 334555555 4576665553 3577899999999999776542
Q ss_pred cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 014369 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV 302 (426)
Q Consensus 223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~ 302 (426)
.+ .+++++|+++++... | +-.+|.+ +..+.++|++.|.+-+
T Consensus 96 -~~-------------------~~vi~~a~~~~i~~i---------P--G~~TptE----i~~a~~~Ga~~vKlFP---- 136 (212)
T PRK05718 96 -LT-------------------PPLLKAAQEGPIPLI---------P--GVSTPSE----LMLGMELGLRTFKFFP---- 136 (212)
T ss_pred -CC-------------------HHHHHHHHHcCCCEe---------C--CCCCHHH----HHHHHHCCCCEEEEcc----
Confidence 11 267788888888764 1 2345655 3446789999999944
Q ss_pred CCHHHH---HHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC
Q 014369 303 GTPGTV---VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG 346 (426)
Q Consensus 303 ~~P~~v---~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG 346 (426)
.+. ..+++.++.-+|..+|.. +=|...-|.-.=+.+|
T Consensus 137 ---a~~~gg~~~lk~l~~p~p~~~~~p----tGGV~~~ni~~~l~ag 176 (212)
T PRK05718 137 ---AEASGGVKMLKALAGPFPDVRFCP----TGGISPANYRDYLALP 176 (212)
T ss_pred ---chhccCHHHHHHHhccCCCCeEEE----eCCCCHHHHHHHHhCC
Confidence 332 367788888788655553 4477778888888888
No 78
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.54 E-value=0.014 Score=58.66 Aligned_cols=191 Identities=17% Similarity=0.194 Sum_probs=128.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh---cC--CCcEEEEeC--ChhhHHHHHHcCCC
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LE--GARLPVLTP--NLKGFEAAIAAGAK 216 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~---~~--~~~l~~l~~--~~~di~~a~~~Gv~ 216 (426)
.++.+....++++-.+.+-++|=-.++..-++... .+.+...++. .. .+.+....- +.+.++.|++.|++
T Consensus 25 ~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~---~~~~~~~~~~~a~~~~~~vPV~lHLDH~~~~~i~~ai~~Gft 101 (293)
T PRK07315 25 TNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGG---YKVCKNLIENLVESMGITVPVAIHLDHGHYEDALECIEVGYT 101 (293)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCc---HHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCC
Confidence 46888888999999999999876655432222111 1222222321 12 234444331 45678899999999
Q ss_pred EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC----CC-CCHHHHHHHHHHHHhCCC
Q 014369 217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----GA-IPPSKVAYVAKELHDMGC 291 (426)
Q Consensus 217 ~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~----~r-~~~~~l~~~~~~l~~~Ga 291 (426)
.|.+=.+ ..+.+|.++..++++++|+..|..+++.+-...|.++. +. ++|+.+.+++ +.|+
T Consensus 102 SVm~d~S----------~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~----~tgv 167 (293)
T PRK07315 102 SIMFDGS----------HLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMV----ETGI 167 (293)
T ss_pred EEEEcCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHH----HcCC
Confidence 8888433 24678999999999999999999998777665443442 22 6787766544 5799
Q ss_pred CEEEEc--CCCCCC---CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369 292 FEISLG--DTIGVG---TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 353 (426)
Q Consensus 292 d~I~l~--DT~G~~---~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S 353 (426)
|.|.++ -.=|.. +|.-=-++++.+++.++++||.+|+-. |....|...+++.|++-|+..
T Consensus 168 D~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGS--Gi~~e~~~~~i~~Gi~KiNv~ 232 (293)
T PRK07315 168 DFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGS--GIPDDQIQEAIKLGVAKVNVN 232 (293)
T ss_pred CEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCC--CCCHHHHHHHHHcCCCEEEEc
Confidence 988776 332221 232334568888888764678888754 788899999999999977543
No 79
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.47 E-value=0.017 Score=55.10 Aligned_cols=152 Identities=26% Similarity=0.340 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEe-CChhhHHHHHHcCCCEEEEec
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLT-PNLKGFEAAIAAGAKEVAIFA 222 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~ 222 (426)
.+.++-+++++.|.+.|++.||+++-. | +..+.++.++ ..+++.+.+-+ -+.++++.++++|++.+.
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t-~-------~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv--- 85 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRT-P-------VALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV--- 85 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC-c-------cHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE---
Confidence 378888999999999999999999732 2 2345555554 45666666544 578999999999999872
Q ss_pred cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 014369 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV 302 (426)
Q Consensus 223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~ 302 (426)
|+.+ -.+++++|+++|+.+. | +-.+|.++.. +.++|++.|-+
T Consensus 86 --sP~~---------------~~~v~~~~~~~~i~~i---------P--G~~TptEi~~----A~~~Ga~~vKl------ 127 (204)
T TIGR01182 86 --SPGL---------------TPELAKHAQDHGIPII---------P--GVATPSEIML----ALELGITALKL------ 127 (204)
T ss_pred --CCCC---------------CHHHHHHHHHcCCcEE---------C--CCCCHHHHHH----HHHCCCCEEEE------
Confidence 2211 1378889999998764 2 3345666444 55799998765
Q ss_pred CCHHH-H--HHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 303 GTPGT-V--VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 303 ~~P~~-v--~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
.|.. + ..+++.|+.-+|.+++- -+=|....|.-.=+.+|+..+
T Consensus 128 -FPA~~~GG~~yikal~~plp~i~~~----ptGGV~~~N~~~~l~aGa~~v 173 (204)
T TIGR01182 128 -FPAEVSGGVKMLKALAGPFPQVRFC----PTGGINLANVRDYLAAPNVAC 173 (204)
T ss_pred -CCchhcCCHHHHHHHhccCCCCcEE----ecCCCCHHHHHHHHhCCCEEE
Confidence 3433 2 36788888888865544 355777789999999999865
No 80
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=97.46 E-value=0.02 Score=57.01 Aligned_cols=188 Identities=15% Similarity=0.170 Sum_probs=128.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc---CCCcEEEEe---CChhhHHHHHHcCCCE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLT---PNLKGFEAAIAAGAKE 217 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~---~~~~di~~a~~~Gv~~ 217 (426)
.+..+....++++-.+.+.+.|=-.++..-++. ..+.+...++.. ..+.+.... .+.+.+..|+++|...
T Consensus 20 ~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~----~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~GftS 95 (276)
T cd00947 20 INNLETLKAILEAAEETRSPVILQISEGAIKYA----GLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAGFSS 95 (276)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCE
Confidence 467788888999999999997655443322221 123333333321 234444433 3578899999999998
Q ss_pred EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC------CCCCHHHHHHHHHHHHhCCC
Q 014369 218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------GAIPPSKVAYVAKELHDMGC 291 (426)
Q Consensus 218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~------~r~~~~~l~~~~~~l~~~Ga 291 (426)
|.+=.|. .+.+++++..++++++|+..|+.|++-+-.+-|.++. ..++|+...++++ +.|+
T Consensus 96 VMiD~S~----------l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~---~Tgv 162 (276)
T cd00947 96 VMIDGSH----------LPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVE---ETGV 162 (276)
T ss_pred EEeCCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHH---HHCC
Confidence 8875432 3578999999999999999999999888876444432 2467888777665 4688
Q ss_pred CEEEEc--CCCCCC---CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369 292 FEISLG--DTIGVG---TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 292 d~I~l~--DT~G~~---~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD 351 (426)
|.+.++ -.=|.- .|.==.++++.+++.++ +||.+|+ .-|+.--....|++.|+.-|+
T Consensus 163 D~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~-vPLVlHG--gSG~~~e~~~~ai~~Gi~KiN 224 (276)
T cd00947 163 DALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVN-VPLVLHG--GSGIPDEQIRKAIKLGVCKIN 224 (276)
T ss_pred CEEEeccCccccccCCCCCccCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHHHHHcCCeEEE
Confidence 855443 232332 45444567888888775 4787776 557888889999999998664
No 81
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=97.46 E-value=0.017 Score=59.15 Aligned_cols=197 Identities=15% Similarity=0.170 Sum_probs=131.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh----cCCCcEEEEe---CChhhHHHHHHcCCC
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD----LEGARLPVLT---PNLKGFEAAIAAGAK 216 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~----~~~~~l~~l~---~~~~di~~a~~~Gv~ 216 (426)
.+..+....++++-.+.+.++|=-.++..-++.+ .+.+...++. .+.+.+.... .+.+.+.+|+++|..
T Consensus 23 ~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g----~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~~GFt 98 (347)
T TIGR01521 23 VNNMEQMRAIMEAADKTDSPVILQASRGARSYAG----APFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAIQLGFT 98 (347)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCC----HHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCC
Confidence 5788999999999999999987766554333222 1222333332 2224444433 467889999999999
Q ss_pred EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC-------CC-----------CCCCHHH
Q 014369 217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-------VE-----------GAIPPSK 278 (426)
Q Consensus 217 ~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p-------d~-----------~r~~~~~ 278 (426)
.|.+=.|.-+ ..+...+.+|+++..++++++|+..|+.|++-|-..-|.+ +. ..++|+.
T Consensus 99 SVMiDgS~l~---~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~Pee 175 (347)
T TIGR01521 99 SVMMDGSLRE---DAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEE 175 (347)
T ss_pred EEeecCcCCc---ccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhhcCCCHHH
Confidence 8887543210 1223457899999999999999999999998887754333 21 1467777
Q ss_pred HHHHHHHHHhCCCCEEEEc--CCCCCCC----H----HHHHHHHHHHHHhcCCceEEEEeCCC-----------------
Q 014369 279 VAYVAKELHDMGCFEISLG--DTIGVGT----P----GTVVPMLEAVMAVVPVEKLAVHLHDT----------------- 331 (426)
Q Consensus 279 l~~~~~~l~~~Gad~I~l~--DT~G~~~----P----~~v~~li~~l~~~~p~~~i~~H~HNd----------------- 331 (426)
..++++ +.|+|.+.++ -.=|.-. | .+ .++++.+++.++++||.+|+=..
T Consensus 176 A~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld-~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~ 251 (347)
T TIGR01521 176 AADFVK---KTKVDALAVAIGTSHGAYKFTRKPTGEVLA-IQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIK 251 (347)
T ss_pred HHHHHH---HHCcCEEehhcccccCCcCCCCCCChhhcC-HHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhccccc
Confidence 666665 5688854443 3334332 4 33 34578888888656899988654
Q ss_pred --cCcHHHHHHHHHHcCCCEEe
Q 014369 332 --YGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 332 --~GlA~ANaLaAl~aGa~~VD 351 (426)
+|.--.....|++.|+.-|+
T Consensus 252 ~~~g~p~e~i~~ai~~GI~KVN 273 (347)
T TIGR01521 252 ETYGVPVEEIVEGIKYGVRKVN 273 (347)
T ss_pred ccCCCCHHHHHHHHHCCCeeEE
Confidence 34557889999999998664
No 82
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.45 E-value=0.0038 Score=61.58 Aligned_cols=177 Identities=20% Similarity=0.223 Sum_probs=104.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--cc--cc---------cCHHHHHHHhH----hcCCCcEEEEeC-Ch-
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKW--VP--QL---------ADARDVMEAVR----DLEGARLPVLTP-NL- 204 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--~p--~~---------~D~~~v~~~i~----~~~~~~l~~l~~-~~- 204 (426)
.-+.+.-+++++.|.+.|++.||+|+|.+.+. .| |- .+.+.+++.++ ..+++.+..|+. |.
T Consensus 20 ~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i 99 (259)
T PF00290_consen 20 YPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPI 99 (259)
T ss_dssp SSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHH
Confidence 34678889999999999999999999864321 12 10 12334444443 335677777774 32
Q ss_pred --h----hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH
Q 014369 205 --K----GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK 278 (426)
Q Consensus 205 --~----di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~ 278 (426)
. -++.+.++|++.+-|..-. ++...+..+.++++|+....-++ | .++++.
T Consensus 100 ~~~G~e~F~~~~~~aGvdGlIipDLP----------------~ee~~~~~~~~~~~gl~~I~lv~-----p---~t~~~R 155 (259)
T PF00290_consen 100 FQYGIERFFKEAKEAGVDGLIIPDLP----------------PEESEELREAAKKHGLDLIPLVA-----P---TTPEER 155 (259)
T ss_dssp HHH-HHHHHHHHHHHTEEEEEETTSB----------------GGGHHHHHHHHHHTT-EEEEEEE-----T---TS-HHH
T ss_pred hccchHHHHHHHHHcCCCEEEEcCCC----------------hHHHHHHHHHHHHcCCeEEEEEC-----C---CCCHHH
Confidence 2 3567778999988886321 12234666778999997653222 2 245677
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 279 VAYVAKELHDMGCFEISLGDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 279 l~~~~~~l~~~Gad~I~l~DT~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
+.++++..... +..+...-++|.- .|.++.++++.+|+.. +.|+.+= +|....--...+..|||.|
T Consensus 156 i~~i~~~a~gF-iY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~-~~Pv~vG----FGI~~~e~~~~~~~~aDGv 223 (259)
T PF00290_consen 156 IKKIAKQASGF-IYLVSRMGVTGSRTELPDELKEFIKRIKKHT-DLPVAVG----FGISTPEQAKKLAAGADGV 223 (259)
T ss_dssp HHHHHHH-SSE-EEEESSSSSSSTTSSCHHHHHHHHHHHHHTT-SS-EEEE----SSS-SHHHHHHHHTTSSEE
T ss_pred HHHHHHhCCcE-EEeeccCCCCCCcccchHHHHHHHHHHHhhc-CcceEEe----cCCCCHHHHHHHHccCCEE
Confidence 66666533211 3334445666655 4789999999999887 3345442 3555555566666888855
No 83
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.44 E-value=0.027 Score=56.19 Aligned_cols=190 Identities=18% Similarity=0.205 Sum_probs=121.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-C--C-CcEEEEe---CChhhHHHHHHcCCC
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-E--G-ARLPVLT---PNLKGFEAAIAAGAK 216 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-~--~-~~l~~l~---~~~~di~~a~~~Gv~ 216 (426)
.++.+....++++-.+.+.+.|=..++..-++.+. .+.+...++.+ . + +.+.... ...+.++.+++.|++
T Consensus 23 ~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~ 99 (282)
T TIGR01859 23 FNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGG---YKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFS 99 (282)
T ss_pred ECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCc---HHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCC
Confidence 46888888999999999999877655433232221 12233333321 1 2 3333322 246788999999999
Q ss_pred EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCC------CCCCCHHHHHHHHHHHHhCC
Q 014369 217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV------EGAIPPSKVAYVAKELHDMG 290 (426)
Q Consensus 217 ~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd------~~r~~~~~l~~~~~~l~~~G 290 (426)
.|.+=.+ ..+.++.++..++++++|+..|+.|...+-..-|.++ .+.++|+.+.++.+ +.|
T Consensus 100 sVmid~s----------~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~---~tg 166 (282)
T TIGR01859 100 SVMIDGS----------HLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVK---ETG 166 (282)
T ss_pred EEEECCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHH---HHC
Confidence 8877433 2367899999999999999999988766654222222 22457777655553 359
Q ss_pred CCEEEEc-CC-CCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369 291 CFEISLG-DT-IGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 352 (426)
Q Consensus 291 ad~I~l~-DT-~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~ 352 (426)
+|.|.++ -| -|.. .|.-=-++++.+++.++ +||..| ..-|...-|...++++|++-|+.
T Consensus 167 vD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~-iPlv~h--GgSGi~~e~i~~~i~~Gi~kiNv 229 (282)
T TIGR01859 167 VDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTN-IPLVLH--GASGIPEEQIKKAIKLGIAKINI 229 (282)
T ss_pred cCEEeeccCccccccCCCCccCHHHHHHHHHHhC-CCEEEE--CCCCCCHHHHHHHHHcCCCEEEE
Confidence 9987743 11 1111 12222445677777765 366655 45688889999999999997643
No 84
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=97.40 E-value=0.023 Score=58.27 Aligned_cols=206 Identities=15% Similarity=0.196 Sum_probs=134.2
Q ss_pred ccCCCCCC--CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh----cCCCcEEEEe---CChhh
Q 014369 136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD----LEGARLPVLT---PNLKG 206 (426)
Q Consensus 136 DG~Q~~~~--~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~----~~~~~l~~l~---~~~~d 206 (426)
++.+..+. .+..++...++++-.+.+.++|=-.++..-++.+ .+.+...++. .+.+.+.... ...+.
T Consensus 15 ~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g----~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~ 90 (347)
T PRK13399 15 ENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGARKYAG----DAMLRHMVLAAAEMYPDIPICLHQDHGNSPAT 90 (347)
T ss_pred HCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCC----HHHHHHHHHHHHHhcCCCcEEEECCCCCCHHH
Confidence 34444433 5788999999999999999987666554333322 1223333332 2234444433 45788
Q ss_pred HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC-------C---------
Q 014369 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-------V--------- 270 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p-------d--------- 270 (426)
+.+|+++|...|.+=.|.-+ .-+...+.+++++.-++++++|+..|+.|++-|-..-|.+ +
T Consensus 91 i~~Ai~~GFtSVMiDgS~l~---~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~ 167 (347)
T PRK13399 91 CQSAIRSGFTSVMMDGSLLA---DGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLS 167 (347)
T ss_pred HHHHHhcCCCEEEEeCCCCC---CCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCcccccccc
Confidence 99999999998887543211 0012235789999999999999999999998886543222 2
Q ss_pred --CCCCCHHHHHHHHHHHHhCCCCEEEEc--CCCCCC----CHH---HHHHHHHHHHHhcCCceEEEEeCCC--------
Q 014369 271 --EGAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG----TPG---TVVPMLEAVMAVVPVEKLAVHLHDT-------- 331 (426)
Q Consensus 271 --~~r~~~~~l~~~~~~l~~~Gad~I~l~--DT~G~~----~P~---~v~~li~~l~~~~p~~~i~~H~HNd-------- 331 (426)
...++|+...++++ +.|+|.+.++ -.=|.- .|. ==.++++.+++.++++||.+|+=..
T Consensus 168 ~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~ 244 (347)
T PRK13399 168 HDQMLTDPDQAVDFVQ---RTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEI 244 (347)
T ss_pred ccccCCCHHHHHHHHH---HHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHH
Confidence 12567887777665 4688854443 233333 132 1245678888888656899998664
Q ss_pred -----------cCcHHHHHHHHHHcCCCEEe
Q 014369 332 -----------YGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 332 -----------~GlA~ANaLaAl~aGa~~VD 351 (426)
+|........|+..|+.-|+
T Consensus 245 ~~~~g~~~~~~~g~~~e~~~kai~~GI~KIN 275 (347)
T PRK13399 245 INAYGGKMKETYGVPVEEIQRGIKHGVRKVN 275 (347)
T ss_pred HHHhcCCccccCCCCHHHHHHHHHCCCeEEE
Confidence 45668889999999998763
No 85
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=97.37 E-value=0.033 Score=56.21 Aligned_cols=189 Identities=17% Similarity=0.138 Sum_probs=126.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh----cCCCcEEEEe---CChhhHHHHHHcCCC
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD----LEGARLPVLT---PNLKGFEAAIAAGAK 216 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~----~~~~~l~~l~---~~~~di~~a~~~Gv~ 216 (426)
.+..++-..++++-.+.+.++|=-.+...-++. ..+.+...++. .+.+.+.... .+.+.+.+|+++|..
T Consensus 24 ~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~----g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~Gft 99 (307)
T PRK05835 24 FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYM----GIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFT 99 (307)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhC----ChHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCC
Confidence 578899999999999999998776554332322 12223333332 1224444433 467889999999999
Q ss_pred EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--------CCCCHHHHHHHHHHHHh
Q 014369 217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--------GAIPPSKVAYVAKELHD 288 (426)
Q Consensus 217 ~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--------~r~~~~~l~~~~~~l~~ 288 (426)
.|.+=.| ..+.+|+++..++++++|+..|+.|++-+-.+-|.++. ..++|+...++++ +
T Consensus 100 SVM~DgS----------~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~---~ 166 (307)
T PRK05835 100 SVMIDAS----------HHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVK---E 166 (307)
T ss_pred EEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHH---h
Confidence 8887544 23568999999999999999999999888775444442 1467777666654 6
Q ss_pred CCCCEEEEc--CCCCCC----CHHHHHHHHHHHHHhcCCceEEEEeCCC-------------------cCcHHHHHHHHH
Q 014369 289 MGCFEISLG--DTIGVG----TPGTVVPMLEAVMAVVPVEKLAVHLHDT-------------------YGQSLPNILISL 343 (426)
Q Consensus 289 ~Gad~I~l~--DT~G~~----~P~~v~~li~~l~~~~p~~~i~~H~HNd-------------------~GlA~ANaLaAl 343 (426)
.|+|.+.++ -+=|.- .|.==-++++.+++.++ +||.+|+=.. +|-.+-....|+
T Consensus 167 TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~-iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai 245 (307)
T PRK05835 167 SQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTN-IPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESV 245 (307)
T ss_pred hCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhC-CCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHH
Confidence 799954433 333332 23333556777888775 4798887544 333445778888
Q ss_pred HcCCCEE
Q 014369 344 QMGISTV 350 (426)
Q Consensus 344 ~aGa~~V 350 (426)
..|+.-|
T Consensus 246 ~~GI~Ki 252 (307)
T PRK05835 246 KGGINKV 252 (307)
T ss_pred HcCceEE
Confidence 8888766
No 86
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.35 E-value=0.0079 Score=59.37 Aligned_cols=177 Identities=19% Similarity=0.214 Sum_probs=108.9
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--cc--cc---------cCHHHHHHHhHhc----CCCcEEEEe-CCh--
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKW--VP--QL---------ADARDVMEAVRDL----EGARLPVLT-PNL-- 204 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--~p--~~---------~D~~~v~~~i~~~----~~~~l~~l~-~~~-- 204 (426)
-+.+.-+++++.|.+.|++.||+|+|-+.+. .| |. ...++.++.++.+ .++.+..|+ .|.
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~ 107 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIF 107 (265)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHH
Confidence 3778889999999999999999999754321 12 11 1223444444422 455666666 342
Q ss_pred -hh----HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHH
Q 014369 205 -KG----FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV 279 (426)
Q Consensus 205 -~d----i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l 279 (426)
.+ ++.+.++|++.+-+..-. ++...++.+.|+++|+.... +..|. ++++.+
T Consensus 108 ~~Gie~F~~~~~~~GvdGlivpDLP----------------~ee~~~~~~~~~~~gi~~I~-----lvaPt---t~~~rl 163 (265)
T COG0159 108 NYGIEKFLRRAKEAGVDGLLVPDLP----------------PEESDELLKAAEKHGIDPIF-----LVAPT---TPDERL 163 (265)
T ss_pred HhhHHHHHHHHHHcCCCEEEeCCCC----------------hHHHHHHHHHHHHcCCcEEE-----EeCCC---CCHHHH
Confidence 23 567889999998887321 23344677788899998652 21232 345665
Q ss_pred HHHHHHHHhCC-CCEEEEcCCCCCCCH--HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 014369 280 AYVAKELHDMG-CFEISLGDTIGVGTP--GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA 355 (426)
Q Consensus 280 ~~~~~~l~~~G-ad~I~l~DT~G~~~P--~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~ 355 (426)
.++++.. -| +..+...-++|.-.| ..+.++++.+|+... .|+.+ |.|+.+.-.+-+.+.- -|+-|.
T Consensus 164 ~~i~~~a--~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~-~Pv~v------GFGIs~~e~~~~v~~~-ADGVIV 232 (265)
T COG0159 164 KKIAEAA--SGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTD-VPVLV------GFGISSPEQAAQVAEA-ADGVIV 232 (265)
T ss_pred HHHHHhC--CCcEEEEecccccCCCcccchhHHHHHHHHHHhcC-CCeEE------ecCcCCHHHHHHHHHh-CCeEEE
Confidence 5555422 13 567777788888887 348999999998763 34543 4555544444433322 444444
No 87
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.35 E-value=0.038 Score=55.24 Aligned_cols=188 Identities=14% Similarity=0.184 Sum_probs=127.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh---cCCCcEEEEe---CChhhHHHHHHcCCCE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LEGARLPVLT---PNLKGFEAAIAAGAKE 217 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~---~~~~di~~a~~~Gv~~ 217 (426)
.++.++...++++-.+.+.++|=-.++..-++. ..+.+...++. ...+.+.... .+.+.+.+|+++|...
T Consensus 25 v~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~----g~~~~~~~~~~~A~~~~VPValHLDH~~~~e~i~~ai~~GftS 100 (284)
T PRK12857 25 CNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYA----GIEYISAMVRTAAEKASVPVALHLDHGTDFEQVMKCIRNGFTS 100 (284)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEechhHhhhC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCe
Confidence 468888889999999999998766554322221 12223233332 1234444333 4578899999999998
Q ss_pred EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC----C----CCCHHHHHHHHHHHHhC
Q 014369 218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----G----AIPPSKVAYVAKELHDM 289 (426)
Q Consensus 218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~----~----r~~~~~l~~~~~~l~~~ 289 (426)
|.+=-|. .+.+|+++..++++++|+..|+.|++-|-.+-|.++. . .++|+...++++ +.
T Consensus 101 VM~DgS~----------lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~---~T 167 (284)
T PRK12857 101 VMIDGSK----------LPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVE---ET 167 (284)
T ss_pred EEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHH---HH
Confidence 8875432 3578999999999999999999999888876444432 1 467877777664 56
Q ss_pred CCCEEEEcC--CCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369 290 GCFEISLGD--TIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 290 Gad~I~l~D--T~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD 351 (426)
|+|.+.++= .=|.- .|.==.++++.+++.++ +||.+|+ .-|+.-.....|++.|+.-|+
T Consensus 168 gvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~-vPLVlHG--gSG~~~e~~~~ai~~Gi~KiN 230 (284)
T PRK12857 168 GVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVN-IPIVLHG--SSGVPDEAIRKAISLGVRKVN 230 (284)
T ss_pred CCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHHHHHcCCeEEE
Confidence 888554432 22221 34444567788887775 4787766 558888999999999988553
No 88
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=97.34 E-value=0.011 Score=57.84 Aligned_cols=206 Identities=15% Similarity=0.141 Sum_probs=112.5
Q ss_pred HHHHHHHhCCCCeEEEecCCCCCcc-ccc--cCHHHHHHHhHhcCCCcEEEEeC--------C-----------hhhHHH
Q 014369 152 ELIRRLVSSGLPVVEATSFVSPKWV-PQL--ADARDVMEAVRDLEGARLPVLTP--------N-----------LKGFEA 209 (426)
Q Consensus 152 ~I~~~L~~~Gv~~IEvG~~~s~~~~-p~~--~D~~~v~~~i~~~~~~~l~~l~~--------~-----------~~di~~ 209 (426)
+.++.+.++|++.||+.......+. +.. .+.+++.+.++...+..+.+..+ + .+-++.
T Consensus 14 ~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~ 93 (279)
T cd00019 14 NALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIER 93 (279)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHH
Confidence 3455668899999999643222111 110 12333444444333455555432 1 112456
Q ss_pred HHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369 210 AIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (426)
Q Consensus 210 a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~ 289 (426)
|.+.|++.|.++....+. .......+..++.+.+++++|++.|+.+. +....+.....-.+++.+.++++.+-.
T Consensus 94 A~~lG~~~v~~~~g~~~~---~~~~~~~~~~~~~l~~l~~~a~~~gi~l~--lEn~~~~~~~~~~t~~~~~~li~~v~~- 167 (279)
T cd00019 94 CEELGIRLLVFHPGSYLG---QSKEEGLKRVIEALNELIDKAETKGVVIA--LETMAGQGNEIGSSFEELKEIIDLIKE- 167 (279)
T ss_pred HHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHHHHHhccCCCCEEE--EeCCCCCCCCCCCCHHHHHHHHHhcCC-
Confidence 677899988876543220 00011235567778888899999998765 333221111112456666666655430
Q ss_pred CCCEE-EEcCCCC-----C--CCHHHHHHHHHHHHHhcCC-ceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCC
Q 014369 290 GCFEI-SLGDTIG-----V--GTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGC 360 (426)
Q Consensus 290 Gad~I-~l~DT~G-----~--~~P~~v~~li~~l~~~~p~-~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGec 360 (426)
-+.+ .+-|+.= . .+|++..+.++.+.+.++. -...+|+||..+... + + +..
T Consensus 168 -~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i~~~~i~~vHikD~~~~~~---------~---------~-~~~ 227 (279)
T cd00019 168 -KPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVIGLEYLKAIHLNDSKGELG---------S---------G-KDR 227 (279)
T ss_pred -CCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHhChhheeEEEEEcCCCccc---------C---------C-Ccc
Confidence 2222 2334322 2 1356677888887776642 248899999875420 0 0 011
Q ss_pred CCCCCCCCcccHHHHHHHHHhCCC
Q 014369 361 PYAKGASGNVATEDVVYMLSGLGV 384 (426)
Q Consensus 361 P~a~graGNa~lEevv~~L~~lG~ 384 (426)
...+| .|..+..+++..|+..|+
T Consensus 228 ~~~~G-~G~id~~~~l~~L~~~~y 250 (279)
T cd00019 228 HEPIG-EGDIDGEELFKELKKDPY 250 (279)
T ss_pred ccCCC-CCCcCCHHHHHHHHhCcc
Confidence 22234 688999999999999887
No 89
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=97.33 E-value=0.049 Score=54.49 Aligned_cols=188 Identities=18% Similarity=0.187 Sum_probs=127.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc---CC--CcEEEEe---CChhhHHHHHHcCC
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EG--ARLPVLT---PNLKGFEAAIAAGA 215 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~---~~--~~l~~l~---~~~~di~~a~~~Gv 215 (426)
.+..++...++++-.+.+.+.|=-.++..-++. ...+.+...++.. .. +.+.... .+.+.+.+|+++|.
T Consensus 25 ~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~Gf 101 (285)
T PRK07709 25 MNNLEWTQAILAAAEEEKSPVILGVSEGAARHM---TGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGF 101 (285)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhc---CCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCC
Confidence 478888889999999999998766554332220 1223333333321 12 3444433 35788999999999
Q ss_pred CEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC----C--CCCHHHHHHHHHHHHhC
Q 014369 216 KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----G--AIPPSKVAYVAKELHDM 289 (426)
Q Consensus 216 ~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~----~--r~~~~~l~~~~~~l~~~ 289 (426)
..|.+=.|. .+.+|+++.-++++++|+..|+.|++-|-..-|.++. . .++|+...++++ +.
T Consensus 102 tSVM~DgS~----------lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~---~T 168 (285)
T PRK07709 102 TSVMIDASH----------HPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVE---AT 168 (285)
T ss_pred CEEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHH---Hh
Confidence 988875442 4578999999999999999999999988876454442 1 478888777665 56
Q ss_pred CCCEEEEc--CCCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 290 GCFEISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 290 Gad~I~l~--DT~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
|+|.+.++ -.=|.- .|.==.++++.+++.++ +||.+|+ ..|+.-.....|+..|+.-|
T Consensus 169 gvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~-iPLVLHG--gSG~~~e~~~~ai~~Gi~Ki 230 (285)
T PRK07709 169 GIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTG-VPLVLHG--GTGIPTADIEKAISLGTSKI 230 (285)
T ss_pred CCCEEEEeecccccCcCCCCccCHHHHHHHHHHHC-CCEEEeC--CCCCCHHHHHHHHHcCCeEE
Confidence 99855542 222221 24333456777777775 4787766 57888889999999998755
No 90
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=97.33 E-value=0.04 Score=55.25 Aligned_cols=188 Identities=17% Similarity=0.145 Sum_probs=126.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh---cC--CCcEEEEe---CChhhHHHHHHcCC
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LE--GARLPVLT---PNLKGFEAAIAAGA 215 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~---~~--~~~l~~l~---~~~~di~~a~~~Gv 215 (426)
.+..+....++++-.+.+.+.|=-.++..-++. ...+.+...++. .. .+.+.... .+.+.+.+|+++|.
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~---~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~Gf 101 (288)
T TIGR00167 25 INNLETINAVLEAAAEEKSPVIIQFSNGAAKYI---AGLGAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAGF 101 (288)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEECCcchhhcc---CCHHHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcCC
Confidence 468888889999999999998766544332221 112333333332 12 33444433 46789999999999
Q ss_pred CEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--------CCCCHHHHHHHHHHHH
Q 014369 216 KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--------GAIPPSKVAYVAKELH 287 (426)
Q Consensus 216 ~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--------~r~~~~~l~~~~~~l~ 287 (426)
..|.+=.|. .+.+|+++.-++++++|+..|+.|++-|-.+-|.++. ..++|+...+++ .
T Consensus 102 tSVMiDgS~----------lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv---~ 168 (288)
T TIGR00167 102 SSVMIDGSH----------EPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFV---K 168 (288)
T ss_pred CEEEecCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHH---h
Confidence 988874432 3578999999999999999999999888876454442 146787665555 3
Q ss_pred hCCCCEEEEcC--CCCCC--CHH-HHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 288 DMGCFEISLGD--TIGVG--TPG-TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 288 ~~Gad~I~l~D--T~G~~--~P~-~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
+.|+|.+.++= .=|.- .|. ==.++++.+++.++ +||.+|+ .-|+.-.....|++.|+.-|
T Consensus 169 ~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~-vPLVlHG--gSG~~~e~~~~ai~~Gi~Ki 233 (288)
T TIGR00167 169 LTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVN-LPLVLHG--GSGIPDEEIKKAISLGVVKV 233 (288)
T ss_pred ccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHHHHHcCCeEE
Confidence 67898665542 22322 243 22356777777775 4788876 45778888999999998755
No 91
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.31 E-value=0.0061 Score=57.72 Aligned_cols=153 Identities=24% Similarity=0.268 Sum_probs=102.2
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEe-CChhhHHHHHHcCCCEEEEec
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLT-PNLKGFEAAIAAGAKEVAIFA 222 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~ 222 (426)
-+.++-++++++|.+.|++.||+++-. | +..+.++.++ +.|++.+.+-+ .+.++++.|+++|++.+.-.
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t-~-------~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP- 87 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRT-P-------NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSP- 87 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTS-T-------THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEES-
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCC-c-------cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECC-
Confidence 467888999999999999999999743 2 3445566554 56887777654 68899999999999976543
Q ss_pred cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--cCCC
Q 014369 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL--GDTI 300 (426)
Q Consensus 223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l--~DT~ 300 (426)
..+ .+++++|+++|+.+.. +-.+|.++.. +.++|++.+-+ ++..
T Consensus 88 ~~~-------------------~~v~~~~~~~~i~~iP-----------G~~TptEi~~----A~~~G~~~vK~FPA~~~ 133 (196)
T PF01081_consen 88 GFD-------------------PEVIEYAREYGIPYIP-----------GVMTPTEIMQ----ALEAGADIVKLFPAGAL 133 (196)
T ss_dssp S---------------------HHHHHHHHHHTSEEEE-----------EESSHHHHHH----HHHTT-SEEEETTTTTT
T ss_pred CCC-------------------HHHHHHHHHcCCcccC-----------CcCCHHHHHH----HHHCCCCEEEEecchhc
Confidence 111 3788899999997653 2234655444 55799998776 3443
Q ss_pred CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 301 GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 301 G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
|- ..+++.|+.-+|+.++-. +=|....|.-.=+++|+..+
T Consensus 134 GG------~~~ik~l~~p~p~~~~~p----tGGV~~~N~~~~l~ag~~~v 173 (196)
T PF01081_consen 134 GG------PSYIKALRGPFPDLPFMP----TGGVNPDNLAEYLKAGAVAV 173 (196)
T ss_dssp TH------HHHHHHHHTTTTT-EEEE----BSS--TTTHHHHHTSTTBSE
T ss_pred Cc------HHHHHHHhccCCCCeEEE----cCCCCHHHHHHHHhCCCEEE
Confidence 31 478888888888755543 34555578888888997644
No 92
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=97.31 E-value=0.044 Score=54.77 Aligned_cols=188 Identities=14% Similarity=0.129 Sum_probs=128.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-C--CCcEEEEe---CChhhHHHHHHcCCCE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-E--GARLPVLT---PNLKGFEAAIAAGAKE 217 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-~--~~~l~~l~---~~~~di~~a~~~Gv~~ 217 (426)
.++.++...++++-.+.+.++|=-.++..-++. ..+.+...++.. . .+.+.... .+.+.+.+|+++|...
T Consensus 23 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~----~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtS 98 (282)
T TIGR01858 23 IHNLETIQAVVETAAEMRSPVILAGTPGTFKHA----GTEYIVALCSAASTTYNMPLALHLDHHESLDDIRQKVHAGVRS 98 (282)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCE
Confidence 478889999999999999998766554332221 233344444422 2 33444332 4678999999999998
Q ss_pred EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--------CCCCHHHHHHHHHHHHhC
Q 014369 218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--------GAIPPSKVAYVAKELHDM 289 (426)
Q Consensus 218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--------~r~~~~~l~~~~~~l~~~ 289 (426)
|.+=.|. .+.+|+++..++++++|+..|+.|++-|-..-|.++. ..++|+...++++ +.
T Consensus 99 VM~DgS~----------lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~---~T 165 (282)
T TIGR01858 99 AMIDGSH----------FPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVE---AT 165 (282)
T ss_pred EeecCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHH---HH
Confidence 8875442 3578999999999999999999999888876444442 1467777766654 67
Q ss_pred CCCEEEEcC--CCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369 290 GCFEISLGD--TIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 290 Gad~I~l~D--T~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD 351 (426)
|+|.+.++= .=|.- .|.==.++++.+++.++ +||.+|+ .-|+.--....|+..|+.-|+
T Consensus 166 gvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~-iPLVlHG--gSG~~~e~~~~ai~~Gi~KiN 228 (282)
T TIGR01858 166 GVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVD-VPLVLHG--ASDVPDEDVRRTIELGICKVN 228 (282)
T ss_pred CcCEEecccCccccCcCCCCccCHHHHHHHHHHhC-CCeEEec--CCCCCHHHHHHHHHcCCeEEE
Confidence 998555432 22221 24333567788887775 4787776 556678889999999988663
No 93
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=97.31 E-value=0.043 Score=54.92 Aligned_cols=188 Identities=15% Similarity=0.140 Sum_probs=127.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh---cCC--CcEEEEe---CChhhHHHHHHcCC
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LEG--ARLPVLT---PNLKGFEAAIAAGA 215 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~---~~~--~~l~~l~---~~~~di~~a~~~Gv 215 (426)
.+..+....++++-.+.+.++|=-.++..-++.+ ..+.+...++. -.. +.+.... .+.+.+++|+++|.
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~---~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~Gf 101 (286)
T PRK08610 25 LNNLEFTQAILEASQEENAPVILGVSEGAARYMS---GFYTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGF 101 (286)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcC---cHHHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 4688888899999999999987665443222211 12223333332 122 3344433 46788999999999
Q ss_pred CEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC------CCCCHHHHHHHHHHHHhC
Q 014369 216 KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------GAIPPSKVAYVAKELHDM 289 (426)
Q Consensus 216 ~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~------~r~~~~~l~~~~~~l~~~ 289 (426)
..|.+=.|. .+.+|+++.-++++++|+..|+.|++-|-.+-|.++. ..++|+...++++ +.
T Consensus 102 tSVM~DgS~----------l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~---~T 168 (286)
T PRK08610 102 TSVMIDASH----------SPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVE---KT 168 (286)
T ss_pred CEEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHH---HH
Confidence 988885442 4578999999999999999999999988876444432 1478888777765 67
Q ss_pred CCCEEEEcC--CCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 290 GCFEISLGD--TIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 290 Gad~I~l~D--T~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
|+|.+.++= .=|.- .|.==.++++.+++.++ +||.+|+ ..|..-.....|+..|+.-|
T Consensus 169 gvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~-vPLVLHG--gSG~~~e~~~~ai~~GI~Ki 230 (286)
T PRK08610 169 GIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTG-LPLVLHG--GTGIPTKDIQKAIPFGTAKI 230 (286)
T ss_pred CCCEEEeeccccccccCCCCCCCHHHHHHHHHHHC-CCEEEeC--CCCCCHHHHHHHHHCCCeEE
Confidence 888554432 22221 23223456777777765 4787766 57888889999999998755
No 94
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.31 E-value=0.03 Score=56.01 Aligned_cols=197 Identities=14% Similarity=0.118 Sum_probs=131.9
Q ss_pred cccCCCCCC--CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc---CCCcEEEEe---CChhh
Q 014369 135 RDGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLT---PNLKG 206 (426)
Q Consensus 135 RDG~Q~~~~--~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~---~~~~d 206 (426)
|++.+..+. .+..+....++++-.+.+.+.|=-.++..-++.+ .+.+...++.. ..+.+.... .+.+.
T Consensus 14 ~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g----~~~~~~~~~~~a~~~~VPValHLDH~~~~e~ 89 (284)
T PRK12737 14 QAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAG----TDYIVAIAEVAARKYNIPLALHLDHHEDLDD 89 (284)
T ss_pred HHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCC----HHHHHHHHHHHHHHCCCCEEEECCCCCCHHH
Confidence 444444443 5788999999999999999987655443322221 22233333321 234444433 45788
Q ss_pred HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--------CCCCHHH
Q 014369 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--------GAIPPSK 278 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--------~r~~~~~ 278 (426)
+.+|+++|...|.+=.| . .+.+++++..++++++|+..|+.|++-+-..-|.++. ..++|+.
T Consensus 90 i~~ai~~GftSVMiDgS--~--------lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~pee 159 (284)
T PRK12737 90 IKKKVRAGIRSVMIDGS--H--------LSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDA 159 (284)
T ss_pred HHHHHHcCCCeEEecCC--C--------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHH
Confidence 99999999998877433 2 3678999999999999999999999888876555442 1468888
Q ss_pred HHHHHHHHHhCCCCEEEEcC--CCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369 279 VAYVAKELHDMGCFEISLGD--TIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 279 l~~~~~~l~~~Gad~I~l~D--T~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD 351 (426)
..++++ +.|+|.+.++= .=|.- .|.==.++++.+++.++ +||.+|+ .-|+.--....|++.|+.-|+
T Consensus 160 A~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~-iPLVlHG--gSG~~~e~~~kai~~Gi~KiN 230 (284)
T PRK12737 160 AAEFVE---RTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVS-IPLVLHG--ASGVPDEDVKKAISLGICKVN 230 (284)
T ss_pred HHHHHH---HhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHHHHHCCCeEEE
Confidence 777765 47998555542 22321 34323456778877765 4677665 567778889999999998664
No 95
>PRK05927 hypothetical protein; Provisional
Probab=97.28 E-value=0.04 Score=56.63 Aligned_cols=224 Identities=14% Similarity=0.120 Sum_probs=133.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHh---Hh-cCCCcEEEEeC-------------Chh
Q 014369 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAV---RD-LEGARLPVLTP-------------NLK 205 (426)
Q Consensus 143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i---~~-~~~~~l~~l~~-------------~~~ 205 (426)
..++.++.++.++...+.|+..|=+.....|+ .+.+.+.+.+ ++ .|++.+-++.+ ..+
T Consensus 74 y~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~-----~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e 148 (350)
T PRK05927 74 YLLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQ-----LGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQ 148 (350)
T ss_pred cccCHHHHHHHHHHHHHCCCCEEEEeCCCCCC-----CCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHH
Confidence 36899999999999999999988776554543 2344444444 42 35565434332 235
Q ss_pred hHHHHHHcCCCEEE---EeccCChHHHhhhcCCCHHH-HHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369 206 GFEAAIAAGAKEVA---IFASASEAFSKSNINCSIED-SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 281 (426)
Q Consensus 206 di~~a~~~Gv~~V~---i~~~~Sd~~~~~~~~~s~~e-~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~ 281 (426)
.+++..++|++.+. +-+..+. ....+ ++.. ..++=.++++.|+++|+++...+++ |- +. +++..++
T Consensus 149 ~l~~Lk~aGl~~l~g~~~Et~~~~--~~~~~--~p~k~~~~~rl~~i~~A~~lGi~~~sg~l~--G~---gE-t~e~ri~ 218 (350)
T PRK05927 149 ALERLWDAGQRTIPGGGAEILSER--VRKII--SPKKMGPDGWIQFHKLAHRLGFRSTATMMF--GH---VE-SPEDILL 218 (350)
T ss_pred HHHHHHHcCcccCCCCCchhCCHH--Hhhcc--CCCCCCHHHHHHHHHHHHHcCCCcCceeEE--ee---CC-CHHHHHH
Confidence 67788899997554 2222222 22221 1111 1233347888999999999887774 42 22 3455555
Q ss_pred HHHHHHhC----CCCEEEEc------CCC---C---CCCHHHHHHHHHHHHHhcCCceEEEEeC-CCcCcHHHHHHHHHH
Q 014369 282 VAKELHDM----GCFEISLG------DTI---G---VGTPGTVVPMLEAVMAVVPVEKLAVHLH-DTYGQSLPNILISLQ 344 (426)
Q Consensus 282 ~~~~l~~~----Gad~I~l~------DT~---G---~~~P~~v~~li~~l~~~~p~~~i~~H~H-Nd~GlA~ANaLaAl~ 344 (426)
.+..+.+. |--.--|+ +|- . ..+|.+..++++..|-.+|+.+ |.. .-..+|.--+..|+.
T Consensus 219 ~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~lp~~~---~i~~~w~~~G~~~~q~~L~ 295 (350)
T PRK05927 219 HLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVARIFLDNFD---HIAASWFGEGKEEGAKGLH 295 (350)
T ss_pred HHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHhCCCCC---cccCCccccCHHHHHHHHh
Confidence 44444443 31111134 453 1 4788999999988888777532 211 223456677789999
Q ss_pred cCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369 345 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE 385 (426)
Q Consensus 345 aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~ 385 (426)
+||+-+++++..====|.|+...+ ..++++...++..|..
T Consensus 296 ~GanDlggt~~~e~v~~~ag~~~~-~~~~~l~~~i~~~G~~ 335 (350)
T PRK05927 296 YGADDFGGTILDESVHKCTGWDLQ-SSEEEICAMILSEGFI 335 (350)
T ss_pred CCCccccCCCccceeeccCCCCCc-CCHHHHHHHHHHcCCC
Confidence 999999988743111122222333 3688888888877764
No 96
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.25 E-value=0.034 Score=55.53 Aligned_cols=188 Identities=18% Similarity=0.269 Sum_probs=126.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh---cCCCcEEEEe---CChhhHHHHHHcCCCE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LEGARLPVLT---PNLKGFEAAIAAGAKE 217 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~---~~~~di~~a~~~Gv~~ 217 (426)
.+..+....++++-.+.+-++|=-.++..-+. ...+.+...++. -.++.+.... .+.+.++.|+++|.+.
T Consensus 25 ~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~----~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~GftS 100 (283)
T PRK07998 25 TTNLETTISILNAIERSGLPNFIQIAPTNAQL----SGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGFTS 100 (283)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEECcHhHHhh----CCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCCCE
Confidence 46788888899999999999876655432221 122333333332 2234444433 4678999999999999
Q ss_pred EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC------CCCCHHHHHHHHHHHHhCCC
Q 014369 218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------GAIPPSKVAYVAKELHDMGC 291 (426)
Q Consensus 218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~------~r~~~~~l~~~~~~l~~~Ga 291 (426)
|.+=.| ..+.+++++..++++++|+..|+.|++-+-..-|.++. ..++|+...++++ +.|+
T Consensus 101 VM~DgS----------~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~---~Tgv 167 (283)
T PRK07998 101 VMIDGA----------ALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVE---RTGC 167 (283)
T ss_pred EEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHH---HhCc
Confidence 888433 24678999999999999999999998888775454432 1468887766554 6788
Q ss_pred CEEEEcC--CCCCCC-HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369 292 FEISLGD--TIGVGT-PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 292 d~I~l~D--T~G~~~-P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD 351 (426)
|.+.++= .=|.-. |.-=.++++.+++..+ +||.+|+= -|..--....|+..|+.-|+
T Consensus 168 D~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~-vPLVlHGg--SG~~~e~~~~ai~~Gi~KiN 227 (283)
T PRK07998 168 DMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSP-VPLVIHGG--SGIPPEILRSFVNYKVAKVN 227 (283)
T ss_pred CeeehhccccccCCCCCCcCHHHHHHHHhhCC-CCEEEeCC--CCCCHHHHHHHHHcCCcEEE
Confidence 8554432 222111 4322467888888775 47888764 57777888999999988553
No 97
>PRK08508 biotin synthase; Provisional
Probab=97.25 E-value=0.1 Score=51.84 Aligned_cols=216 Identities=13% Similarity=0.059 Sum_probs=134.3
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEe-cCCCCCccccccCHHHHHHHhHhc----CCCcEEEEe--CChhhHHHHHHcCCCE
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEAT-SFVSPKWVPQLADARDVMEAVRDL----EGARLPVLT--PNLKGFEAAIAAGAKE 217 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG-~~~s~~~~p~~~D~~~v~~~i~~~----~~~~l~~l~--~~~~di~~a~~~Gv~~ 217 (426)
++.++.++.++...+.|+..|-+. .--.. +. .+.+.+.+.++.+ +++.+.+.. .+.+.++...++|++.
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~---~~-~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~ 115 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGL---DD-KKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFS 115 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCC---Cc-ccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCE
Confidence 699999999999999999877552 11110 00 1334445444432 444433221 2567888889999999
Q ss_pred EEEeccCChHHHhhhc-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369 218 VAIFASASEAFSKSNI-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (426)
Q Consensus 218 V~i~~~~Sd~~~~~~~-~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l 296 (426)
+.+-+-+++.+..... +.+ ++...+.++.|++.|+++...+. +|. + -+++++.+.+..+.+.+.+.|-+
T Consensus 116 ~~~~lEt~~~~~~~i~~~~~----~~~~l~~i~~a~~~Gi~v~sg~I--~Gl---G-Et~ed~~~~l~~lr~L~~~svpl 185 (279)
T PRK08508 116 YNHNLETSKEFFPKICTTHT----WEERFQTCENAKEAGLGLCSGGI--FGL---G-ESWEDRISFLKSLASLSPHSTPI 185 (279)
T ss_pred EcccccchHHHhcCCCCCCC----HHHHHHHHHHHHHcCCeecceeE--Eec---C-CCHHHHHHHHHHHHcCCCCEEee
Confidence 9988777664433221 233 34445667788999998887666 442 2 24788899999999999874432
Q ss_pred ------cCCC---CCCCHHHHHHHHHHHHHhcCCceEEEEeC--CCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCC
Q 014369 297 ------GDTI---GVGTPGTVVPMLEAVMAVVPVEKLAVHLH--DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKG 365 (426)
Q Consensus 297 ------~DT~---G~~~P~~v~~li~~l~~~~p~~~i~~H~H--Nd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~g 365 (426)
++|- ...+|.+..++++..|-.+|...|-+-+= ..+| ..-..++.+||+.+ -++++=
T Consensus 186 ~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~---~~~~~~~~~g~n~~--~~g~~l------- 253 (279)
T PRK08508 186 NFFIPNPALPLKAPTLSADEALEIVRLAKEALPNARLMVAGGREVVFG---ERQYEIFEAGANAI--VIGDYL------- 253 (279)
T ss_pred CCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecCChhhhch---hhHHHHHhcCCcce--eecCcc-------
Confidence 2221 23678899999998888888755555431 1111 13456788998853 222221
Q ss_pred CCCcccHHHHHHHHHhCCCCC
Q 014369 366 ASGNVATEDVVYMLSGLGVET 386 (426)
Q Consensus 366 raGNa~lEevv~~L~~lG~~~ 386 (426)
-+.+.+.++=..+++.+|...
T Consensus 254 t~~g~~~~~d~~~~~~~~~~~ 274 (279)
T PRK08508 254 TTKGEAPKKDIEKLKSLGFEI 274 (279)
T ss_pred cCCCCChHHHHHHHHHcCCCc
Confidence 133345566666888888763
No 98
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.24 E-value=0.049 Score=51.81 Aligned_cols=150 Identities=29% Similarity=0.334 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEe-CChhhHHHHHHcCCCEEEEec
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLT-PNLKGFEAAIAAGAKEVAIFA 222 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~ 222 (426)
.+.++-+++++.|.+.|++.||+++- +|. ..+.++.++ +.+++.+.+-+ -+.++++.++++|++.+.-.
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~-tp~-------a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP- 83 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLR-TPA-------ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSP- 83 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC-Ccc-------HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECC-
Confidence 47888999999999999999999974 332 334555554 45666666544 57899999999999866433
Q ss_pred cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 014369 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV 302 (426)
Q Consensus 223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~ 302 (426)
..+ .+++++|+++|+.+. | +-.+|.++.. +.++|++.|-+
T Consensus 84 ~~~-------------------~~vi~~a~~~~i~~i---------P--G~~TptEi~~----A~~~Ga~~vK~------ 123 (201)
T PRK06015 84 GTT-------------------QELLAAANDSDVPLL---------P--GAATPSEVMA----LREEGYTVLKF------ 123 (201)
T ss_pred CCC-------------------HHHHHHHHHcCCCEe---------C--CCCCHHHHHH----HHHCCCCEEEE------
Confidence 121 378889999998765 2 3356666544 55799998876
Q ss_pred CCHHHH---HHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCC
Q 014369 303 GTPGTV---VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS 348 (426)
Q Consensus 303 ~~P~~v---~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~ 348 (426)
.|... ..+++.|+.-+|.++|- -+=|....|.-.=+.+|+.
T Consensus 124 -FPa~~~GG~~yikal~~plp~~~l~----ptGGV~~~n~~~~l~ag~~ 167 (201)
T PRK06015 124 -FPAEQAGGAAFLKALSSPLAGTFFC----PTGGISLKNARDYLSLPNV 167 (201)
T ss_pred -CCchhhCCHHHHHHHHhhCCCCcEE----ecCCCCHHHHHHHHhCCCe
Confidence 34322 37788888888875554 3557777888888888865
No 99
>PRK06801 hypothetical protein; Provisional
Probab=97.24 E-value=0.055 Score=54.15 Aligned_cols=186 Identities=16% Similarity=0.173 Sum_probs=124.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc---CCCcEEEEe---CChhhHHHHHHcCCCE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLT---PNLKGFEAAIAAGAKE 217 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~---~~~~di~~a~~~Gv~~ 217 (426)
.++.++...++++-.+.+.++|=-.++..-++ ...+.+...++.. ..+.+.... ...+.++.|++.|++.
T Consensus 25 ~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~----~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~GftS 100 (286)
T PRK06801 25 VLDSHFLRALFAAAKQERSPFIINIAEVHFKY----ISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSS 100 (286)
T ss_pred eCCHHHHHHHHHHHHHHCCCEEEEeCcchhhc----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCcE
Confidence 47889999999999999999876554432222 1233333444322 234444433 3578899999999999
Q ss_pred EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC----------CCCCHHHHHHHHHHHH
Q 014369 218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----------GAIPPSKVAYVAKELH 287 (426)
Q Consensus 218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~----------~r~~~~~l~~~~~~l~ 287 (426)
|.+=.| +.+.++.++..++++++|+.+|+.|++.+-.. |..+. ..++|+...++++
T Consensus 101 Vm~D~S----------~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~v-gg~e~~v~~~~~~~~~~T~pe~a~~f~~--- 166 (286)
T PRK06801 101 VMFDGS----------TLEYEENVRQTREVVKMCHAVGVSVEAELGAV-GGDEGGALYGEADSAKFTDPQLARDFVD--- 166 (286)
T ss_pred EEEcCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEeecCcc-cCCCCCcccCCcccccCCCHHHHHHHHH---
Confidence 888433 23568999999999999999999988767653 33221 1356666555543
Q ss_pred hCCCCEEEEcCCCCCC------CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369 288 DMGCFEISLGDTIGVG------TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 352 (426)
Q Consensus 288 ~~Gad~I~l~DT~G~~------~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~ 352 (426)
+.|+|.+.+ ++|.. .|.-=.++++.+++.++ +||.+|+ .-|....|...++.+|++-|+.
T Consensus 167 ~tgvD~LAv--aiGt~Hg~y~~~~~l~~e~l~~i~~~~~-~PLVlHG--GSgi~~e~~~~~i~~Gi~KINv 232 (286)
T PRK06801 167 RTGIDALAV--AIGNAHGKYKGEPKLDFARLAAIHQQTG-LPLVLHG--GSGISDADFRRAIELGIHKINF 232 (286)
T ss_pred HHCcCEEEe--ccCCCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEC--CCCCCHHHHHHHHHcCCcEEEe
Confidence 579998887 33321 22222345667777665 4787776 4477789999999999997754
No 100
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=97.21 E-value=0.082 Score=52.96 Aligned_cols=187 Identities=13% Similarity=0.136 Sum_probs=127.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh---cCCCcEEEEe---CChhhHHHHHHcCCCE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LEGARLPVLT---PNLKGFEAAIAAGAKE 217 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~---~~~~di~~a~~~Gv~~ 217 (426)
.+..+....++++-.+.+-+.|=-.++..-++. ..+.+...++. -..+.+.... .+.+.+..|+++|...
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~----~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtS 100 (286)
T PRK12738 25 IHNAETIQAILEVCSEMRSPVILAGTPGTFKHI----ALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRS 100 (286)
T ss_pred eCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCe
Confidence 468888899999999999998766544322211 12333333332 1234444433 4678899999999998
Q ss_pred EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC----C----CCCHHHHHHHHHHHHhC
Q 014369 218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----G----AIPPSKVAYVAKELHDM 289 (426)
Q Consensus 218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~----~----r~~~~~l~~~~~~l~~~ 289 (426)
|.+=.| ..+.+|+++..++++++|+.+|+.|++-|-.+-|.++. . .++|+...++++ +.
T Consensus 101 VM~DgS----------~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~---~T 167 (286)
T PRK12738 101 AMIDGS----------HFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVE---LT 167 (286)
T ss_pred EeecCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHH---Hh
Confidence 887433 24578999999999999999999999888876444442 1 467887777654 56
Q ss_pred CCCEEEEcC--CCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 290 GCFEISLGD--TIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 290 Gad~I~l~D--T~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
|+|.+.++= .=|.- .|.==.++++.+++.++ +||.+|+ .-|..--....|++.|+.-|
T Consensus 168 gvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~-vPLVLHG--gSG~~~e~~~kai~~GI~Ki 229 (286)
T PRK12738 168 GVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVD-VPLVLHG--ASDVPDEFVRRTIELGVTKV 229 (286)
T ss_pred CCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHHHHHcCCeEE
Confidence 898555432 22221 34444667888888875 4787776 55666788999999998855
No 101
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=97.18 E-value=0.015 Score=58.16 Aligned_cols=186 Identities=19% Similarity=0.208 Sum_probs=123.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh---cCCCcEEEEe---CChhhHHHHHHcCCCE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LEGARLPVLT---PNLKGFEAAIAAGAKE 217 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~---~~~~di~~a~~~Gv~~ 217 (426)
.++.+....++++-.+.+.++|=-.++..-++. ..+.+...++. ..++.+.... .+.+.+++|+++|.+.
T Consensus 24 ~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~----~~~~~~~~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~GftS 99 (287)
T PF01116_consen 24 VYNLETARAVIEAAEELNSPVILQISPSEVKYM----GLEYLAAMVKAAAEEASVPVALHLDHGKDFEDIKRAIDAGFTS 99 (287)
T ss_dssp -SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHH----HHHHHHHHHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHHTSSE
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhh----hHHHHHHHHHHHHHHcCCCEEeecccCCCHHHHHHHHHhCccc
Confidence 578889999999999999997655443211111 11223333332 2244444432 5688999999999999
Q ss_pred EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC---------CCCCHHHHHHHHHHHHh
Q 014369 218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---------GAIPPSKVAYVAKELHD 288 (426)
Q Consensus 218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~---------~r~~~~~l~~~~~~l~~ 288 (426)
|.+=.| ..+.+|+++.-++++++|+..|+.|++-+-..-|.++. ..++|+...++++ +
T Consensus 100 VM~DgS----------~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~---~ 166 (287)
T PF01116_consen 100 VMIDGS----------ALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVE---E 166 (287)
T ss_dssp EEEE-T----------TS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHH---H
T ss_pred ccccCC----------cCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHH---H
Confidence 877443 24578999999999999999999999988876555432 2368888777665 6
Q ss_pred CCCCEEEEcCCCC------CC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 289 MGCFEISLGDTIG------VG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 289 ~Gad~I~l~DT~G------~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
.|+|.+.++ +| .. .|.==.++++.+++.+|.+||.+|+ .-|+.--....|+..|+.-|
T Consensus 167 TgvD~LAva--iGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHG--gSG~~~e~~~~ai~~Gi~Ki 232 (287)
T PF01116_consen 167 TGVDALAVA--IGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHG--GSGLPDEQIRKAIKNGISKI 232 (287)
T ss_dssp HTTSEEEE---SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESS--CTTS-HHHHHHHHHTTEEEE
T ss_pred hCCCEEEEe--cCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEEC--CCCCCHHHHHHHHHcCceEE
Confidence 799975543 44 22 4544467788888888445777655 67788889999999998866
No 102
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.16 E-value=0.1 Score=47.67 Aligned_cols=171 Identities=21% Similarity=0.211 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHh-HhcCC--CcEEEEe--CC--------hhhHHHHHH
Q 014369 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAV-RDLEG--ARLPVLT--PN--------LKGFEAAIA 212 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i-~~~~~--~~l~~l~--~~--------~~di~~a~~ 212 (426)
+.+.-.++++.|.+.|++.|++.. ++++.+ +..++ ..+.+-+ .+ .+.++.|.+
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~ 76 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAID 76 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 677778899999999999999974 233333 23333 4433322 22 245678889
Q ss_pred cCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369 213 AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF 292 (426)
Q Consensus 213 ~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad 292 (426)
.|++.+-+..+.. .....+.++.++.++++++.+ +.++.+..+.. |... .+++.+.++++.+.+.|++
T Consensus 77 ~Gad~i~v~~~~~-----~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~-----p~~~-~~~~~~~~~~~~~~~~g~~ 144 (201)
T cd00945 77 LGADEIDVVINIG-----SLKEGDWEEVLEEIAAVVEAA-DGGLPLKVILE-----TRGL-KTADEIAKAARIAAEAGAD 144 (201)
T ss_pred cCCCEEEEeccHH-----HHhCCCHHHHHHHHHHHHHHh-cCCceEEEEEE-----CCCC-CCHHHHHHHHHHHHHhCCC
Confidence 9999988865421 111112456666677777666 56888775553 3222 4788888888888888988
Q ss_pred EEEEcCCCCCC----CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 293 EISLGDTIGVG----TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 293 ~I~l~DT~G~~----~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
.| +++.|.. ....+..+.+.+.. ..+|.+-+-.+ ...+...++.+|++.+
T Consensus 145 ~i--K~~~~~~~~~~~~~~~~~i~~~~~~---~~~v~~~gg~~---~~~~~~~~~~~Ga~g~ 198 (201)
T cd00945 145 FI--KTSTGFGGGGATVEDVKLMKEAVGG---RVGVKAAGGIK---TLEDALAAIEAGADGI 198 (201)
T ss_pred EE--EeCCCCCCCCCCHHHHHHHHHhccc---CCcEEEECCCC---CHHHHHHHHHhcccee
Confidence 65 5666632 56666655544321 22344433222 3577888888998865
No 103
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=97.15 E-value=0.13 Score=47.97 Aligned_cols=172 Identities=18% Similarity=0.150 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcE--EEEeCC-hhhHHHHHHcCCCEEEEec
Q 014369 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARL--PVLTPN-LKGFEAAIAAGAKEVAIFA 222 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l--~~l~~~-~~di~~a~~~Gv~~V~i~~ 222 (426)
..+.-.+.++.+.+.|++.||++. .....+|.+....+.++.++..++..+ -.++.+ .+-++.+.++|++.|.+..
T Consensus 9 ~~~~~~~~~~~~~~~g~d~i~~~~-~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~ 87 (210)
T TIGR01163 9 DFARLGEEVKAVEEAGADWIHVDV-MDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHP 87 (210)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcC-CCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEcc
Confidence 344567899999999999999972 111112222222345556654444443 345554 3557888899999987754
Q ss_pred cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----cC
Q 014369 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----GD 298 (426)
Q Consensus 223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----~D 298 (426)
...+ .....++.+|++|+.+...++ + .++.+.+.++ ..++|.|.+ +-
T Consensus 88 ~~~~----------------~~~~~~~~~~~~g~~~~~~~~-----~---~t~~e~~~~~-----~~~~d~i~~~~~~~g 138 (210)
T TIGR01163 88 EASE----------------HIHRLLQLIKDLGAKAGIVLN-----P---ATPLEFLEYV-----LPDVDLVLLMSVNPG 138 (210)
T ss_pred CCch----------------hHHHHHHHHHHcCCcEEEEEC-----C---CCCHHHHHHH-----HhhCCEEEEEEEcCC
Confidence 3221 224566788888987753221 1 1233443333 235677665 33
Q ss_pred CCCCCCHHHHHHHHHHHHHhcC----CceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369 299 TIGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 299 T~G~~~P~~v~~li~~l~~~~p----~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD 351 (426)
+.|...+....+.++.+++..+ ..++.+= -|.-..|.-..++.||+.|=
T Consensus 139 ~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~----GGI~~env~~l~~~gad~ii 191 (210)
T TIGR01163 139 FGGQKFIPDTLEKIREVRKMIDENGLSILIEVD----GGVNDDNARELAEAGADILV 191 (210)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcCCCceEEEE----CCcCHHHHHHHHHcCCCEEE
Confidence 4443223333345566655432 1234442 37778888888999999663
No 104
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.14 E-value=0.072 Score=53.29 Aligned_cols=188 Identities=14% Similarity=0.151 Sum_probs=127.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh---cCCCcEEEEe---CChhhHHHHHHcCCCE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LEGARLPVLT---PNLKGFEAAIAAGAKE 217 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~---~~~~di~~a~~~Gv~~ 217 (426)
.++.+....++++-.+.+.+.|=-.++..-++. ..+.+...++. ...+.+.... .+.+.++.|+++|...
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~----g~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai~~GftS 100 (284)
T PRK09195 25 IHNLETMQVVVETAAELHSPVIIAGTPGTFSYA----GTEYLLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKVRSGVRS 100 (284)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCE
Confidence 578888899999999999998765544322221 12233333332 1234444433 3578899999999998
Q ss_pred EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--------CCCCHHHHHHHHHHHHhC
Q 014369 218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--------GAIPPSKVAYVAKELHDM 289 (426)
Q Consensus 218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--------~r~~~~~l~~~~~~l~~~ 289 (426)
|.+=.| ..+.+++++.-++++++|+..|+.|++-|-..-|.++. ..++|+...++++ +.
T Consensus 101 VM~DgS----------~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~---~T 167 (284)
T PRK09195 101 VMIDGS----------HLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVE---AT 167 (284)
T ss_pred EEeCCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHH---HH
Confidence 887433 24578999999999999999999999888776444432 1478888777665 67
Q ss_pred CCCEEEEc--CCCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369 290 GCFEISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 290 Gad~I~l~--DT~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD 351 (426)
|+|.+.++ -.=|.- .|.==.++++.+++.++ +||.+|+= -|..-.....|++.|+.-|+
T Consensus 168 gvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~-vPLVLHGg--SG~~~e~~~~ai~~Gi~KiN 230 (284)
T PRK09195 168 GIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVN-IPLVLHGA--SGLPTKDIQQTIKLGICKVN 230 (284)
T ss_pred CcCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCeEEecC--CCCCHHHHHHHHHcCCeEEE
Confidence 88855443 233331 24333456777777775 47877764 57778899999999988553
No 105
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.13 E-value=0.026 Score=54.51 Aligned_cols=152 Identities=22% Similarity=0.280 Sum_probs=102.8
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-----hcCCCcEEEEe-CChhhHHHHHHcCCCEE
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-----DLEGARLPVLT-PNLKGFEAAIAAGAKEV 218 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-----~~~~~~l~~l~-~~~~di~~a~~~Gv~~V 218 (426)
-+.++-+++++.|.+.|++.||+++-. | +..+.++.++ +.|++.+.+-+ -+.++++.|+++|++.+
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~t-p-------~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~Fi 95 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNRG-D-------FAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFI 95 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC-C-------cHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEE
Confidence 478889999999999999999999732 2 1233344332 33556665544 58899999999999866
Q ss_pred EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--
Q 014369 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL-- 296 (426)
Q Consensus 219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l-- 296 (426)
.-. ..+ .+++++++++|+.+. | +-.+|.++.. +.++|++.|-|
T Consensus 96 VsP-~~~-------------------~~v~~~~~~~~i~~i---------P--G~~TpsEi~~----A~~~Ga~~vKlFP 140 (222)
T PRK07114 96 VTP-LFN-------------------PDIAKVCNRRKVPYS---------P--GCGSLSEIGY----AEELGCEIVKLFP 140 (222)
T ss_pred ECC-CCC-------------------HHHHHHHHHcCCCEe---------C--CCCCHHHHHH----HHHCCCCEEEECc
Confidence 443 121 378889999998765 2 3356666554 55799997766
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHH--HHHHHHHHcCCCEE
Q 014369 297 GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL--PNILISLQMGISTV 350 (426)
Q Consensus 297 ~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~--ANaLaAl~aGa~~V 350 (426)
+++.| ..+++.|+.-+|.+++-- +=|... .|.-.=+.+|+..|
T Consensus 141 A~~~G-------~~~ikal~~p~p~i~~~p----tGGV~~~~~n~~~yl~aGa~av 185 (222)
T PRK07114 141 GSVYG-------PGFVKAIKGPMPWTKIMP----TGGVEPTEENLKKWFGAGVTCV 185 (222)
T ss_pred ccccC-------HHHHHHHhccCCCCeEEe----CCCCCcchhcHHHHHhCCCEEE
Confidence 34433 256777887777644432 445554 57777777887765
No 106
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=97.04 E-value=0.064 Score=54.30 Aligned_cols=230 Identities=12% Similarity=0.053 Sum_probs=129.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcc--------c--ccc-CHHHHHHHhHhcC---CCcEEEEeC---Ch
Q 014369 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWV--------P--QLA-DARDVMEAVRDLE---GARLPVLTP---NL 204 (426)
Q Consensus 142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~--------p--~~~-D~~~v~~~i~~~~---~~~l~~l~~---~~ 204 (426)
...++.++.++.++.+.+.|+..|-+.+...|+.. . .+. ..+.+.+.++.+. +. +..+.+ +.
T Consensus 32 ~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e~~~-~~~~~~g~lt~ 110 (322)
T TIGR03550 32 AALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLEYLRELCELALEETGL-LPHTNPGVMSR 110 (322)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcCC-ccccCCCCCCH
Confidence 34689999999999999999999887655444310 0 000 0122222333222 22 122222 45
Q ss_pred hhHHHHHHcCCCEEEEeccCChHHHhhhcCC--CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369 205 KGFEAAIAAGAKEVAIFASASEAFSKSNINC--SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 282 (426)
Q Consensus 205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~--s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~ 282 (426)
+.++...++|++ +++..-+.........+. ++.+..+.-.+.++.|+++|+++...++ ||. .+ +++...+.
T Consensus 111 e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~Gi~~~s~~i--~G~-gE---t~ed~~~~ 183 (322)
T TIGR03550 111 DELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKIPFTTGIL--IGI-GE---TREERAES 183 (322)
T ss_pred HHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHcCCCccceee--EeC-CC---CHHHHHHH
Confidence 678888888875 344432221111010111 1111122346888999999999887776 552 22 35555555
Q ss_pred HHHHHhCC-----CCEEEE------cCCC----CCCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcC
Q 014369 283 AKELHDMG-----CFEISL------GDTI----GVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMG 346 (426)
Q Consensus 283 ~~~l~~~G-----ad~I~l------~DT~----G~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aG 346 (426)
+..+.++. ++.+.+ +.|- ...++.+..++++..|=.+| ...|..-. .+| ......|+.+|
T Consensus 184 l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~~~~I~~~~--~l~--~~~~~~~L~~G 259 (322)
T TIGR03550 184 LLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPPDISIQVPP--NLN--REDYRLLLDAG 259 (322)
T ss_pred HHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCCCCeeecCC--ccC--hHHHHHHHhcC
Confidence 55554432 543321 2442 24567888888888877775 33333332 333 21468899999
Q ss_pred CCEEeecccCCCCCCCCCCCCCc-ccHHHHHHHHHhCCCCC
Q 014369 347 ISTVDCSVAGLGGCPYAKGASGN-VATEDVVYMLSGLGVET 386 (426)
Q Consensus 347 a~~VD~Sv~GlGecP~a~graGN-a~lEevv~~L~~lG~~~ 386 (426)
|+-+++|+.=.|+ +....|. .+.++++.+++..|..+
T Consensus 260 and~~gt~~~~~~---~~~~~~~~~~~~~~~~~i~~~g~~p 297 (322)
T TIGR03550 260 IDDWGGVSPVTPD---HVNPEAPWPEIDELARATEEAGFTL 297 (322)
T ss_pred CccccCcccCchh---hcCCCCCCCCHHHHHHHHHHcCCCc
Confidence 9999999641122 0001232 47899999999888753
No 107
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.04 E-value=0.098 Score=48.82 Aligned_cols=154 Identities=23% Similarity=0.265 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEE-eCChhhHHHHHHcCCCEEEEecc
Q 014369 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVL-TPNLKGFEAAIAAGAKEVAIFAS 223 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l-~~~~~di~~a~~~Gv~~V~i~~~ 223 (426)
+.++-+++++.|.+.|++.||+.+- ++ +..+.++.++ ..++..+.+- +-+..+++.++++|.+.|+...
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~-~~-------~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~- 84 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLR-TP-------GALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG- 84 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCC-Ch-------hHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC-
Confidence 5778889999999999999999863 21 1223444444 4455655553 3568899999999999997532
Q ss_pred CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 014369 224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG 303 (426)
Q Consensus 224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~ 303 (426)
++ .+++++++++|..+. .| -.+++++. .+.++|+|.|.+ +-.
T Consensus 85 -~~------------------~~~~~~~~~~~~~~i------~g-----v~t~~e~~----~A~~~Gad~i~~-~p~--- 126 (190)
T cd00452 85 -LD------------------PEVVKAANRAGIPLL------PG-----VATPTEIM----QALELGADIVKL-FPA--- 126 (190)
T ss_pred -CC------------------HHHHHHHHHcCCcEE------CC-----cCCHHHHH----HHHHCCCCEEEE-cCC---
Confidence 11 257778888888764 12 22455533 345799999998 332
Q ss_pred CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369 304 TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 304 ~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD 351 (426)
.|. -.++++.+++.+|..++..=+ |.-..|...-+++|++.|-
T Consensus 127 ~~~-g~~~~~~l~~~~~~~p~~a~G----GI~~~n~~~~~~~G~~~v~ 169 (190)
T cd00452 127 EAV-GPAYIKALKGPFPQVRFMPTG----GVSLDNAAEWLAAGVVAVG 169 (190)
T ss_pred ccc-CHHHHHHHHhhCCCCeEEEeC----CCCHHHHHHHHHCCCEEEE
Confidence 232 455677777777654555543 4455899999999988763
No 108
>PLN02428 lipoic acid synthase
Probab=97.02 E-value=0.059 Score=55.42 Aligned_cols=142 Identities=16% Similarity=0.196 Sum_probs=99.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcccc--ccCHHHHHHHhHh-cCCCcEEEEeCC----hhhHHHHHHcCCC
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LADARDVMEAVRD-LEGARLPVLTPN----LKGFEAAIAAGAK 216 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~--~~D~~~v~~~i~~-~~~~~l~~l~~~----~~di~~a~~~Gv~ 216 (426)
....++..++++.+.+.|+++|-+.+....++ |. .....++++.++. .|.+++.++.+. .+-++...++|.+
T Consensus 129 ~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl-~D~ga~~~~elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d 207 (349)
T PLN02428 129 PPDPDEPENVAEAIASWGVDYVVLTSVDRDDL-PDGGSGHFAETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSGLD 207 (349)
T ss_pred CCChhhHHHHHHHHHHcCCCEEEEEEcCCCCC-CcccHHHHHHHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcCCC
Confidence 34567778899999999999887766532211 21 1223455666664 477888888764 4567888899999
Q ss_pred EEEEeccCChHHHhhhcC---CCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 014369 217 EVAIFASASEAFSKSNIN---CSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291 (426)
Q Consensus 217 ~V~i~~~~Sd~~~~~~~~---~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Ga 291 (426)
.+..-+-+++.+.+ +++ .+.++.+ ++++.|+++ |+.+..+++.-+| -+++++.+.++.+.+.|+
T Consensus 208 ~i~hnlETv~rL~~-~Ir~~~~sye~~L----e~L~~ak~~~pGi~tkSg~MvGLG------ET~Edv~e~l~~Lrelgv 276 (349)
T PLN02428 208 VFAHNIETVERLQR-IVRDPRAGYKQSL----DVLKHAKESKPGLLTKTSIMLGLG------ETDEEVVQTMEDLRAAGV 276 (349)
T ss_pred EEccCccCcHHHHH-HhcCCCCCHHHHH----HHHHHHHHhCCCCeEEEeEEEecC------CCHHHHHHHHHHHHHcCC
Confidence 98877666665433 333 3555554 566678888 9988888885432 257899999999999999
Q ss_pred CEEEEc
Q 014369 292 FEISLG 297 (426)
Q Consensus 292 d~I~l~ 297 (426)
|.+.|.
T Consensus 277 d~vtig 282 (349)
T PLN02428 277 DVVTFG 282 (349)
T ss_pred CEEeec
Confidence 999664
No 109
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=96.97 E-value=0.037 Score=53.93 Aligned_cols=199 Identities=15% Similarity=0.109 Sum_probs=105.1
Q ss_pred HHHHHHHHHhCCCCeEEEecCCCCCccccc--cCHHHHHHHhHhcCCCcEEEEeC-------C-----h-----------
Q 014369 150 KVELIRRLVSSGLPVVEATSFVSPKWVPQL--ADARDVMEAVRDLEGARLPVLTP-------N-----L----------- 204 (426)
Q Consensus 150 ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~--~D~~~v~~~i~~~~~~~l~~l~~-------~-----~----------- 204 (426)
-.+.++.+.++|++.||++......+.|.+ .+.+++.+.++. .++++.++.+ + .
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~-~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 93 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQT-YQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIK 93 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHH-cCCeEEEecCcccCcCccccCCCHHHHHHHHHHHH
Confidence 355677788999999999632111111222 123333333332 3455544321 1 0
Q ss_pred hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC--CCCHHHHHHH
Q 014369 205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG--AIPPSKVAYV 282 (426)
Q Consensus 205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~--r~~~~~l~~~ 282 (426)
+.++.|...|++.|.++...... . .......+...+.+.+++++|+++|+++. +... .|..+ ..+++.+.++
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~~~~-~-~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--iE~~--~~~~~~~~~t~~~~~~l 167 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAHAGY-L-TPPNVIWGRLAENLSELCEYAENIGMDLI--LEPL--TPYESNVVCNANDVLHA 167 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCC-C-CCHHHHHHHHHHHHHHHHHHHHHcCCEEE--EecC--CCCcccccCCHHHHHHH
Confidence 12456777899998886431100 0 00011235666777888999999998664 2211 11111 2245565555
Q ss_pred HHHHHhCCCC-EEEEcCCCCC-CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCC
Q 014369 283 AKELHDMGCF-EISLGDTIGV-GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGC 360 (426)
Q Consensus 283 ~~~l~~~Gad-~I~l~DT~G~-~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGec 360 (426)
++ +.+-+ .-.+.|+.=. ....++.+.++.+. +. -..+|++|..+-. .+
T Consensus 168 ~~---~~~~~~v~~~~D~~h~~~~~~~~~~~i~~~~---~r-I~~vHi~D~~~~~-----------------------~~ 217 (275)
T PRK09856 168 LA---LVPSPRLFSMVDICAPYVQAEPVMSYFDKLG---DK-LRHLHIVDSDGAS-----------------------DT 217 (275)
T ss_pred HH---HcCCCcceeEEeecchhcCCCCHHHHHHHhC---Cc-EEEEEEEcCCCCC-----------------------CC
Confidence 54 44422 2233477432 12233344444332 32 4788999987521 11
Q ss_pred CCCCCCCCcccHHHHHHHHHhCCCCC
Q 014369 361 PYAKGASGNVATEDVVYMLSGLGVET 386 (426)
Q Consensus 361 P~a~graGNa~lEevv~~L~~lG~~~ 386 (426)
...+| .|+.+..+++..|+..|++.
T Consensus 218 ~~~pG-~G~id~~~i~~~L~~~gy~g 242 (275)
T PRK09856 218 HYIPG-EGKMPLRELMRDIIDRGYEG 242 (275)
T ss_pred CcCCC-CCCCCHHHHHHHHHHcCCCc
Confidence 22334 68999999999999988763
No 110
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=96.96 E-value=0.15 Score=50.10 Aligned_cols=187 Identities=19% Similarity=0.231 Sum_probs=105.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCccccccCHHH---HHHHhHhc---CCCcEEEEeCChhhHHHHHHcC
Q 014369 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARD---VMEAVRDL---EGARLPVLTPNLKGFEAAIAAG 214 (426)
Q Consensus 142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~~~---v~~~i~~~---~~~~l~~l~~~~~di~~a~~~G 214 (426)
+..++.+..++.++.+.+.|.+.|++|...+ |. .+.....+| +...++.+ .+..++.=+.+.+-++.|++.|
T Consensus 17 ~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~-~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al~~G 95 (257)
T TIGR01496 17 GRFLSVDKAVAHAERMLEEGADIIDVGGESTRPG-ADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAALEAG 95 (257)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHcC
Confidence 3356889999999999999999999996443 32 222211222 33333322 2555655667889999999999
Q ss_pred CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCC----------CHHHHHHHHH
Q 014369 215 AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI----------PPSKVAYVAK 284 (426)
Q Consensus 215 v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~----------~~~~l~~~~~ 284 (426)
++.|.=.-.. . ..++++.+++.|..+.+ +..-|.|..... -.+++.+.++
T Consensus 96 ~~iINsis~~--------------~----~~~~~~l~~~~~~~vV~--m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~ 155 (257)
T TIGR01496 96 ADIINDVSGG--------------Q----DPAMLEVAAEYGVPLVL--MHMRGTPRTMQENPHYEDVVEEVLRFLEARAE 155 (257)
T ss_pred CCEEEECCCC--------------C----CchhHHHHHHcCCcEEE--EeCCCCCcccccCCCcccHHHHHHHHHHHHHH
Confidence 8865532111 0 12445557788887763 433333322100 1145566677
Q ss_pred HHHhCCCC--EEEEcCCCCCC-CHHHHHHHHHHHHHh----cCCceEEE------------EeCCCcCcHHHHHHHHHHc
Q 014369 285 ELHDMGCF--EISLGDTIGVG-TPGTVVPMLEAVMAV----VPVEKLAV------------HLHDTYGQSLPNILISLQM 345 (426)
Q Consensus 285 ~l~~~Gad--~I~l~DT~G~~-~P~~v~~li~~l~~~----~p~~~i~~------------H~HNd~GlA~ANaLaAl~a 345 (426)
.+.+.|++ .|.|==-+|.. ++.+-.++++.++.- +|. -+++ -..+..+..++-+..|++.
T Consensus 156 ~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~~~~p~-l~G~SrkSfig~v~~~~~~~r~~~t~~~~~~a~~~ 234 (257)
T TIGR01496 156 ELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVALGYPL-LVGASRKSFIGALLGTPPEERLEGTLAASAYAVQK 234 (257)
T ss_pred HHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHhCCCcE-EEEecccHHHHhhcCCChhhhhHHHHHHHHHHHHc
Confidence 78889984 55442233332 344445555554421 232 1332 1223334445555667888
Q ss_pred CCCEE
Q 014369 346 GISTV 350 (426)
Q Consensus 346 Ga~~V 350 (426)
||++|
T Consensus 235 Ga~ii 239 (257)
T TIGR01496 235 GADIV 239 (257)
T ss_pred CCCEE
Confidence 88877
No 111
>PRK05926 hypothetical protein; Provisional
Probab=96.91 E-value=0.16 Score=52.70 Aligned_cols=228 Identities=12% Similarity=0.093 Sum_probs=130.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeC------------C-hhhH
Q 014369 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTP------------N-LKGF 207 (426)
Q Consensus 142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~------------~-~~di 207 (426)
...++.++.++.++.. +.|+..|=+-....|.. .+....++++.++ ..|++.+.++.+ . .+.+
T Consensus 96 ~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~--~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l 172 (370)
T PRK05926 96 GWFYTPDQLVQSIKEN-PSPITETHIVAGCFPSC--NLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVL 172 (370)
T ss_pred cccCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCC--CHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHH
Confidence 3467899999999988 79998777654333321 1111234444555 347777776642 1 2347
Q ss_pred HHHHHcCCCEEEEe-c-cCChHHHh-hh-cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369 208 EAAIAAGAKEVAIF-A-SASEAFSK-SN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 283 (426)
Q Consensus 208 ~~a~~~Gv~~V~i~-~-~~Sd~~~~-~~-~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~ 283 (426)
++..++|++.+... . ..++...+ .. -.++.+ +-.++++.|+++|+++.+.+. || .. -+++..++.+
T Consensus 173 ~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~----e~l~~i~~a~~~Gi~~~sgmi--~G-~g---Et~edrv~~l 242 (370)
T PRK05926 173 QTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQ----GFLEIHKTAHSLGIPSNATML--CY-HR---ETPEDIVTHM 242 (370)
T ss_pred HHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHH----HHHHHHHHHHHcCCcccCceE--Ee-CC---CCHHHHHHHH
Confidence 88899999976642 1 12232221 11 133443 335788899999999987754 43 12 2467777777
Q ss_pred HHHHhCCCCE-----EEE-----cCCC--------CCCCHHHHHHHHHHHHHhcCC-ceEEEEeCCCcCcHHHHHHHHHH
Q 014369 284 KELHDMGCFE-----ISL-----GDTI--------GVGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQ 344 (426)
Q Consensus 284 ~~l~~~Gad~-----I~l-----~DT~--------G~~~P~~v~~li~~l~~~~p~-~~i~~H~HNd~GlA~ANaLaAl~ 344 (426)
..+.+...+. +.. .+|. +..++.+..++++..|=.+++ ..|..-. +. +|..-+..|+.
T Consensus 243 ~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~n~~~iqa~w-~~--~G~~~~q~~L~ 319 (370)
T PRK05926 243 SKLRALQDKTSGFKNFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARLFLDNFPNIKALW-NY--LGIEVALHLLS 319 (370)
T ss_pred HHHHhcCCccCCeeeeEecccCCCCCcccccccccCCCChHHHHHHHHHHHHhcCCCcccccCc-hh--cCHHHHHHHHh
Confidence 7787775443 322 2332 124455555555544433332 1233333 33 35567788999
Q ss_pred cCCCEEeecccCCCCCCCCCCCCC-cccHHHHHHHHHhCCCC
Q 014369 345 MGISTVDCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVE 385 (426)
Q Consensus 345 aGa~~VD~Sv~GlGecP~a~graG-Na~lEevv~~L~~lG~~ 385 (426)
+||+-+++|+..=--=+.|+...+ -.+.++++.+.+..|..
T Consensus 320 ~GanD~ggt~~~e~i~~~ag~~~~~~~~~~~~~~~i~~~g~~ 361 (370)
T PRK05926 320 CGANDLSSTHQGEKVFQMASSQEPIKMDIEGMAHLITQQGRI 361 (370)
T ss_pred CCCccCccccccchhhhccCCCCCCCCCHHHHHHHHHHcCCC
Confidence 999999999975221112221222 24567777777776654
No 112
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=96.91 E-value=0.18 Score=51.86 Aligned_cols=196 Identities=17% Similarity=0.157 Sum_probs=122.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcccc--ccC------------HHHHHHHhHhcCCCcEEEEe---CC--h
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LAD------------ARDVMEAVRDLEGARLPVLT---PN--L 204 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~--~~D------------~~~v~~~i~~~~~~~l~~l~---~~--~ 204 (426)
.+..++...++++-.+...++|=-.++..-++... +.+ ...++..+.+-..+.+.... .+ .
T Consensus 28 v~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg~~~~~ 107 (350)
T PRK09197 28 VVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVILHTDHCAKKLL 107 (350)
T ss_pred eCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcch
Confidence 57889999999999999999876654432221110 111 11222222221234444433 34 5
Q ss_pred hhHHHHHHcC-----------CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--
Q 014369 205 KGFEAAIAAG-----------AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-- 271 (426)
Q Consensus 205 ~di~~a~~~G-----------v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~-- 271 (426)
+.++.++++| ...|.+=.| . .+.+++++.-++++++|+..|+.|++-|-..-|.++.
T Consensus 108 ~~i~~ai~~g~~~v~~a~~~gftSVMiDgS--~--------lpfEeNI~~TkevVe~Ah~~GvsVEaELG~Igg~Ed~~~ 177 (350)
T PRK09197 108 PWIDGLLDAGEKHFAAGGKPLFSSHMIDLS--E--------EPLEENIEICSKYLERMAKAGMTLEIELGVTGGEEDGVD 177 (350)
T ss_pred HHHHHHHHhhHHHHHhcCCCCceeEEeeCC--C--------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCCcCCcc
Confidence 5677777766 777755333 2 4678999999999999999999999988876554432
Q ss_pred --------CCCCHHHHHHHHHHHH-hCCCC--EEEEcCCCCCCC---HHHHHHHHHHHHHhc--------CCceEEEEeC
Q 014369 272 --------GAIPPSKVAYVAKELH-DMGCF--EISLGDTIGVGT---PGTVVPMLEAVMAVV--------PVEKLAVHLH 329 (426)
Q Consensus 272 --------~r~~~~~l~~~~~~l~-~~Gad--~I~l~DT~G~~~---P~~v~~li~~l~~~~--------p~~~i~~H~H 329 (426)
..++|+...+++++.- ..|+| .|.+.-.=|.-. |.==.++++.+++.+ +.+||.+|+=
T Consensus 178 ~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGg 257 (350)
T PRK09197 178 NSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGG 257 (350)
T ss_pred ccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCC
Confidence 1478888888776431 12336 344444444432 333345566666665 1457887764
Q ss_pred CCcCcHHHHHHHHHHcCCCEEe
Q 014369 330 DTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 330 Nd~GlA~ANaLaAl~aGa~~VD 351 (426)
-|+.--....|++.|+.-|+
T Consensus 258 --SGipde~i~~ai~~GI~KIN 277 (350)
T PRK09197 258 --SGSTLEEIREAVSYGVVKMN 277 (350)
T ss_pred --CCCCHHHHHHHHHCCCeeEE
Confidence 58888899999999988654
No 113
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=96.88 E-value=0.17 Score=51.31 Aligned_cols=229 Identities=15% Similarity=0.117 Sum_probs=125.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcc-c----cccC--HHHHHHHhHhc----CCC-cEEEEeC---ChhhHH
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWV-P----QLAD--ARDVMEAVRDL----EGA-RLPVLTP---NLKGFE 208 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~-p----~~~D--~~~v~~~i~~~----~~~-~l~~l~~---~~~di~ 208 (426)
.++.++.++.++.+.+.|+..|-+...-.|... . .+.+ ..+..+.++.+ ... .+..+.+ +.+.++
T Consensus 40 ~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~~g~~~~~~~~~lt~e~i~ 119 (336)
T PRK06245 40 LLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYDLCELALEEGLLPHTNAGILTREEME 119 (336)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCCccccCCCCCHHHHH
Confidence 689999999999999999999888643332210 0 0000 12233333221 111 1112222 345667
Q ss_pred HHHHcCCCEEEEec-cCChHHHhhh-cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH---HH
Q 014369 209 AAIAAGAKEVAIFA-SASEAFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY---VA 283 (426)
Q Consensus 209 ~a~~~Gv~~V~i~~-~~Sd~~~~~~-~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~---~~ 283 (426)
...++|+. +.+.. +.++...+.. -.++ ....++..+.++.|++.|+.+...+++ |. +. +.+...+ .+
T Consensus 120 ~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~-~~~~~~~l~~i~~a~~~Gi~~~~~~i~--G~---gE-t~ed~~~~l~~l 191 (336)
T PRK06245 120 KLKEVNAS-MGLMLEQTSPRLLNTVHRGSP-GKDPELRLETIENAGKLKIPFTTGILI--GI---GE-TWEDRAESLEAI 191 (336)
T ss_pred HHHHhCCC-CCCCccccchhhHHhhccCCC-CCCHHHHHHHHHHHHHcCCceeeeeee--EC---CC-CHHHHHHHHHHH
Confidence 66676654 34432 2344443211 1011 112334467888999999998877764 42 22 2344444 33
Q ss_pred HHH-HhCC-CCEEEE------cCC----CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369 284 KEL-HDMG-CFEISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 284 ~~l-~~~G-ad~I~l------~DT----~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD 351 (426)
+.+ .+.| ++.|.+ +.| ....++.+..++++..|..+|. .+.+-.--.+|. .-...++.+||+-++
T Consensus 192 ~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~Rl~l~~-~i~i~~~~~~~~--~~~~~~L~~Gand~~ 268 (336)
T PRK06245 192 AELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARLILPP-DISIQVPPNLNR--DTGLLLLDAGADDLG 268 (336)
T ss_pred HHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHHHHCCC-CceEecCCccch--HHHHHHHhcCCcccc
Confidence 333 2332 444442 222 2245678889999998888864 232222124444 334566999999999
Q ss_pred ecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369 352 CSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE 385 (426)
Q Consensus 352 ~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~ 385 (426)
+|+...|+=-.+. .. ..++|+++.+++..|..
T Consensus 269 g~~~~~~~~~~~~-~~-~~~~~~~~~~i~~~g~~ 300 (336)
T PRK06245 269 GISPVTKDYVNPE-YP-WPDIEELREILEEAGWP 300 (336)
T ss_pred CCccCCCceeCCC-CC-CCCHHHHHHHHHHcCCC
Confidence 9988655511111 12 25789999999988764
No 114
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=96.84 E-value=0.35 Score=48.33 Aligned_cols=189 Identities=15% Similarity=0.183 Sum_probs=126.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH---hcCCCcEEEEe---CChhhHHHHHHcCCCE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLT---PNLKGFEAAIAAGAKE 217 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~---~~~~~~l~~l~---~~~~di~~a~~~Gv~~ 217 (426)
.+..++...++++-.+.+-++|=-.++..-++.+ .+.+...++ +...+.+.... .+.+.++.|++.|++.
T Consensus 25 ~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~----~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~ts 100 (281)
T PRK06806 25 VANMEMVMGAIKAAEELNSPIILQIAEVRLNHSP----LHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTS 100 (281)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCC----hHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCE
Confidence 5788898999999999999987655543322222 222222222 11233444433 3577889999999998
Q ss_pred EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC-------CCCCHHHHHHHHHHHHhCC
Q 014369 218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-------GAIPPSKVAYVAKELHDMG 290 (426)
Q Consensus 218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~-------~r~~~~~l~~~~~~l~~~G 290 (426)
|.+=.+ ..+.++.++..++++++|++.|..+.+.+-.. |..+. +-++|+.+.++++ +.|
T Consensus 101 Vm~d~s----------~~~~~eni~~t~~v~~~a~~~gv~veaE~ghl-G~~d~~~~~~g~s~t~~eea~~f~~---~tg 166 (281)
T PRK06806 101 VMFDGS----------HLPLEENIQKTKEIVELAKQYGATVEAEIGRV-GGSEDGSEDIEMLLTSTTEAKRFAE---ETD 166 (281)
T ss_pred EEEcCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeE-CCccCCcccccceeCCHHHHHHHHH---hhC
Confidence 888543 24678999999999999999999998777653 42221 1356666555443 579
Q ss_pred CCEEEE--cCCCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369 291 CFEISL--GDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 353 (426)
Q Consensus 291 ad~I~l--~DT~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S 353 (426)
+|.+.+ .=..|.- .|.-=.++++.+++.++ +||..|+ .-|....|...++++|++-|...
T Consensus 167 ~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~-iPlV~hG--~SGI~~e~~~~~i~~G~~kinv~ 230 (281)
T PRK06806 167 VDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVH-IPLVLHG--GSGISPEDFKKCIQHGIRKINVA 230 (281)
T ss_pred CCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcC-CCEEEEC--CCCCCHHHHHHHHHcCCcEEEEh
Confidence 998888 4444432 12223456777777765 4677766 45888899999999999987653
No 115
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=96.83 E-value=0.077 Score=50.06 Aligned_cols=181 Identities=17% Similarity=0.197 Sum_probs=115.8
Q ss_pred HHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhcCC----CcEEEEeCCh-hhHHHHHHcCCCEEEEecc
Q 014369 153 LIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEG----ARLPVLTPNL-KGFEAAIAAGAKEVAIFAS 223 (426)
Q Consensus 153 I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~~~----~~l~~l~~~~-~di~~a~~~Gv~~V~i~~~ 223 (426)
=++.|.++|.+.+-+ |.|+ |+++=-.-+.+.+|+..+ ...-+++.+. .-++..+.+|++.+.+..-
T Consensus 22 e~~~~l~~GadwlHlDVMDg~FV-----pNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~tfH~E 96 (224)
T KOG3111|consen 22 ECKKMLDAGADWLHLDVMDGHFV-----PNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFTFHYE 96 (224)
T ss_pred HHHHHHHcCCCeEEEeeeccccc-----CCcccchHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceEEEEEe
Confidence 356678899997666 4444 444333456777775322 3445677775 4678888999997766542
Q ss_pred CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE---EcCC-
Q 014369 224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS---LGDT- 299 (426)
Q Consensus 224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~---l~DT- 299 (426)
+.+...++++++|+.|+++.+.+- | .++.+.+..++. -+|.+- +.=-
T Consensus 97 ----------------~~q~~~~lv~~ir~~Gmk~G~alk-----P---gT~Ve~~~~~~~-----~~D~vLvMtVePGF 147 (224)
T KOG3111|consen 97 ----------------ATQKPAELVEKIREKGMKVGLALK-----P---GTPVEDLEPLAE-----HVDMVLVMTVEPGF 147 (224)
T ss_pred ----------------eccCHHHHHHHHHHcCCeeeEEeC-----C---CCcHHHHHHhhc-----cccEEEEEEecCCC
Confidence 233356889999999999875442 2 256677766664 222211 1111
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHH
Q 014369 300 IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYML 379 (426)
Q Consensus 300 ~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L 379 (426)
-|.-.-++.-.-++.||+++|...|++ |=|++..|+-.+.+|||+.+= .|-+- -|-.+-.+++..|
T Consensus 148 GGQkFme~mm~KV~~lR~kyp~l~iev----DGGv~~~ti~~~a~AGAN~iV---aGsav-------f~a~d~~~vi~~l 213 (224)
T KOG3111|consen 148 GGQKFMEDMMPKVEWLREKYPNLDIEV----DGGVGPSTIDKAAEAGANMIV---AGSAV-------FGAADPSDVISLL 213 (224)
T ss_pred chhhhHHHHHHHHHHHHHhCCCceEEe----cCCcCcchHHHHHHcCCCEEE---eccee-------ecCCCHHHHHHHH
Confidence 122223455556889999999766766 679999999999999999763 23221 3345667777777
Q ss_pred Hh
Q 014369 380 SG 381 (426)
Q Consensus 380 ~~ 381 (426)
+.
T Consensus 214 r~ 215 (224)
T KOG3111|consen 214 RN 215 (224)
T ss_pred HH
Confidence 64
No 116
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.83 E-value=0.12 Score=49.16 Aligned_cols=155 Identities=19% Similarity=0.210 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCC-CcEEEEe-CChhhHHHHHHcCCCEEEEe
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEG-ARLPVLT-PNLKGFEAAIAAGAKEVAIF 221 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~-~~l~~l~-~~~~di~~a~~~Gv~~V~i~ 221 (426)
.+.++-+++++.|.+.|++.||+.+- ++ +..+.++.++ ..++ +.+.+-+ -+.++++.|+++|++.++..
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~-~~-------~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp 90 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLN-SP-------DPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTP 90 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC-Cc-------cHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECC
Confidence 37889999999999999999999952 22 2334444444 4453 4555443 57889999999999988874
Q ss_pred ccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 014369 222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG 301 (426)
Q Consensus 222 ~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G 301 (426)
.. + .+++++++..|+.+. .| -.+++++ ..+.++|+|.|.+=-+ +
T Consensus 91 ~~--~------------------~~v~~~~~~~~~~~~------~G-----~~t~~E~----~~A~~~Gad~vk~Fpa-~ 134 (206)
T PRK09140 91 NT--D------------------PEVIRRAVALGMVVM------PG-----VATPTEA----FAALRAGAQALKLFPA-S 134 (206)
T ss_pred CC--C------------------HHHHHHHHHCCCcEE------cc-----cCCHHHH----HHHHHcCCCEEEECCC-C
Confidence 22 2 266677888888765 22 2345554 3455799999986222 1
Q ss_pred CCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369 302 VGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 302 ~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD 351 (426)
.+.|.. ++.+++.+| ..++..=+ |.-..|.-.-+++|++.|-
T Consensus 135 ~~G~~~----l~~l~~~~~~~ipvvaiG----GI~~~n~~~~~~aGa~~va 177 (206)
T PRK09140 135 QLGPAG----IKALRAVLPPDVPVFAVG----GVTPENLAPYLAAGAAGFG 177 (206)
T ss_pred CCCHHH----HHHHHhhcCCCCeEEEEC----CCCHHHHHHHHHCCCeEEE
Confidence 233544 444555553 34444332 7777999999999999773
No 117
>PTZ00413 lipoate synthase; Provisional
Probab=96.80 E-value=0.083 Score=54.78 Aligned_cols=144 Identities=16% Similarity=0.208 Sum_probs=101.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcccc--ccCHHHHHHHhHh-cCCCcEEEEeC----ChhhHHHHHHcCC
Q 014369 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LADARDVMEAVRD-LEGARLPVLTP----NLKGFEAAIAAGA 215 (426)
Q Consensus 143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~--~~D~~~v~~~i~~-~~~~~l~~l~~----~~~di~~a~~~Gv 215 (426)
..++.++-.++|++..+.|++++-+++...++ +|. .....+.++.++. .+++.+.++++ +.+.++...++|+
T Consensus 175 ~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDD-L~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~eAG~ 253 (398)
T PTZ00413 175 PPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDD-LPDGGASHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLANSPL 253 (398)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCC-CChhhHHHHHHHHHHHHccCCCCeEEEcCCccccCHHHHHHHHhcCC
Confidence 45799999999999999999999888754321 111 1112334445554 46788888887 4567889999999
Q ss_pred CEEEEeccCChHHHhhhc--CCCHHHHHHHHHHHHHHHHhc---CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC
Q 014369 216 KEVAIFASASEAFSKSNI--NCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG 290 (426)
Q Consensus 216 ~~V~i~~~~Sd~~~~~~~--~~s~~e~l~~~~~~v~~Ak~~---G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G 290 (426)
+.++--+-+++.+-...- +-+.++.+ ++++.||+. |+.+...++ +|. +. +.+++.++++.|.+.|
T Consensus 254 dvynHNLETv~rLyp~VRt~~atYe~sL----e~Lr~AKe~f~~gi~tcSGiI--VGL---GE-T~eEvie~m~dLrelG 323 (398)
T PTZ00413 254 SVYAHNIECVERITPYVRDRRASYRQSL----KVLEHVKEFTNGAMLTKSSIM--LGL---GE-TEEEVRQTLRDLRTAG 323 (398)
T ss_pred CEEecccccCHhHHHHHccCcCCHHHHH----HHHHHHHHHhcCCceEeeeeE--ecC---CC-CHHHHHHHHHHHHHcC
Confidence 999888777776554332 23566665 555567765 777766666 442 22 4688999999999999
Q ss_pred CCEEEEc
Q 014369 291 CFEISLG 297 (426)
Q Consensus 291 ad~I~l~ 297 (426)
+|.+.|.
T Consensus 324 VDivtIG 330 (398)
T PTZ00413 324 VSAVTLG 330 (398)
T ss_pred CcEEeec
Confidence 9999884
No 118
>PRK15452 putative protease; Provisional
Probab=96.80 E-value=0.011 Score=62.46 Aligned_cols=108 Identities=17% Similarity=0.048 Sum_probs=72.5
Q ss_pred CcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCC
Q 014369 195 ARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI 274 (426)
Q Consensus 195 ~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~ 274 (426)
.++.+.+.+.+.++.|+++|+|.|.+..+--.... ..-+.+ .+.+.+++++|+++|.++.+++-.. + ...
T Consensus 4 peLlapag~~e~l~aAi~~GADaVY~G~~~~~~R~-~~~~f~----~edl~eav~~ah~~g~kvyvt~n~i---~--~e~ 73 (443)
T PRK15452 4 PELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRV-RNNEFN----HENLALGINEAHALGKKFYVVVNIA---P--HNA 73 (443)
T ss_pred cEEEEECCCHHHHHHHHHCCCCEEEECCCccchhh-hccCCC----HHHHHHHHHHHHHcCCEEEEEecCc---C--CHH
Confidence 45667777899999999999999998643211100 011223 3457788999999998876543321 1 122
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCc
Q 014369 275 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVE 322 (426)
Q Consensus 275 ~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~ 322 (426)
+.+.+.+..+.+.++|+|.|.+.|. |. +..+++..|+.
T Consensus 74 el~~~~~~l~~l~~~gvDgvIV~d~-G~---------l~~~ke~~p~l 111 (443)
T PRK15452 74 KLKTFIRDLEPVIAMKPDALIMSDP-GL---------IMMVREHFPEM 111 (443)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCH-HH---------HHHHHHhCCCC
Confidence 4456777788889999999999983 33 56666767753
No 119
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=96.78 E-value=0.23 Score=51.13 Aligned_cols=138 Identities=15% Similarity=0.183 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc-cCHHHHHHHhHhcCCCcEEEEeC----ChhhHHHHHHcCCCEE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTP----NLKGFEAAIAAGAKEV 218 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~----~~~di~~a~~~Gv~~V 218 (426)
.++.++..++++.+.+.|+..|.++- .. |-+ .|..++++.++. .+..+.+.+- +.+-++...+.|++.|
T Consensus 45 ~~~~e~~~~ii~~~~~~g~~~v~~~G-GE----Pll~~~~~~il~~~~~-~g~~~~i~TNG~ll~~~~~~~L~~~g~~~v 118 (378)
T PRK05301 45 ELSTEEWIRVLREARALGALQLHFSG-GE----PLLRKDLEELVAHARE-LGLYTNLITSGVGLTEARLAALKDAGLDHI 118 (378)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEC-Cc----cCCchhHHHHHHHHHH-cCCcEEEECCCccCCHHHHHHHHHcCCCEE
Confidence 57889999999999999988777642 12 222 234455555543 2444443332 2456777788999999
Q ss_pred EEeccCC--hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369 219 AIFASAS--EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (426)
Q Consensus 219 ~i~~~~S--d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l 296 (426)
.|.+... +.|.+. -|. ...++++.+.++.++++|+.|.+.+. + ++...+.+.++++.+.+.|++.+.+
T Consensus 119 ~iSldg~~~e~~d~i-rg~--~g~f~~~~~~i~~l~~~g~~v~i~~v--v-----~~~N~~~i~~~~~~~~~lgv~~i~~ 188 (378)
T PRK05301 119 QLSFQDSDPELNDRL-AGT--KGAFAKKLAVARLVKAHGYPLTLNAV--I-----HRHNIDQIPRIIELAVELGADRLEL 188 (378)
T ss_pred EEEecCCCHHHHHHH-cCC--CchHHHHHHHHHHHHHCCCceEEEEE--e-----ecCCHHHHHHHHHHHHHcCCCEEEE
Confidence 9887653 333321 121 12466667788889999998875443 2 3456788999999999999998877
Q ss_pred c
Q 014369 297 G 297 (426)
Q Consensus 297 ~ 297 (426)
.
T Consensus 189 ~ 189 (378)
T PRK05301 189 A 189 (378)
T ss_pred e
Confidence 4
No 120
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=96.78 E-value=0.1 Score=52.87 Aligned_cols=138 Identities=15% Similarity=0.071 Sum_probs=90.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc-cCHHHHHHHhHhcCCCcEEEEeCC----hhhHHHHHHcCCCEE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPN----LKGFEAAIAAGAKEV 218 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~~----~~di~~a~~~Gv~~V 218 (426)
.++.++..++++.+.+.|++.|-++. - .|-+ .|..++++.+++.++.....++-| .+-++...++|++.|
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tG-G----EPllr~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~v 118 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTG-G----EPLVRRGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKRL 118 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC-c----CCCccccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCeE
Confidence 58999999999999999999998863 1 2222 245566666665554432333333 234566778999999
Q ss_pred EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 014369 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI 294 (426)
Q Consensus 219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I 294 (426)
.|.+-..+......++. ...++++.+.++.+++.|+ .+.++.... + ....+++.++++.+.+.|++..
T Consensus 119 ~ISlDs~~~e~~~~i~~--~g~~~~vl~~i~~~~~~Gi~~v~in~v~~---~---g~N~~ei~~~~~~~~~~gi~~~ 187 (329)
T PRK13361 119 NISLDTLRPELFAALTR--NGRLERVIAGIDAAKAAGFERIKLNAVIL---R---GQNDDEVLDLVEFCRERGLDIA 187 (329)
T ss_pred EEEeccCCHHHhhhhcC--CCCHHHHHHHHHHHHHcCCCceEEEEEEE---C---CCCHHHHHHHHHHHHhcCCeEE
Confidence 99875433211122222 2457778888899999998 676544321 1 2456888999999999998753
No 121
>PRK12928 lipoyl synthase; Provisional
Probab=96.75 E-value=0.049 Score=54.56 Aligned_cols=160 Identities=19% Similarity=0.254 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc--cCHHHHHHHhHhc-CCCcEEEEeCC-----hhhHHHHHHcCC
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL--ADARDVMEAVRDL-EGARLPVLTPN-----LKGFEAAIAAGA 215 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~--~D~~~v~~~i~~~-~~~~l~~l~~~-----~~di~~a~~~Gv 215 (426)
.++.++.+++++.+.+.|++.|-++.....+ .|.. ....++++.++.. +.+++-++.+. .+.++...++|.
T Consensus 86 ~~~~eei~~~a~~~~~~G~keivitg~~~dD-l~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag~ 164 (290)
T PRK12928 86 PLDPDEPERVAEAVAALGLRYVVLTSVARDD-LPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAKP 164 (290)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEeCCc-ccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcCc
Confidence 5899999999999999999998886543321 1111 1235666777654 67888888874 345778888998
Q ss_pred CEEEEeccCChHHHhh-hcCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369 216 KEVAIFASASEAFSKS-NINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF 292 (426)
Q Consensus 216 ~~V~i~~~~Sd~~~~~-~~~~s~~e~l~~~~~~v~~Ak~~G--~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad 292 (426)
+.+...+..++...+. +-+.+.+ +..++++.|++.| +.+...++..+ +. +.+++.+..+.+.+.+++
T Consensus 165 ~i~~hnlEt~~~vl~~m~r~~t~e----~~le~l~~ak~~gp~i~~~s~iIvG~-----GE-T~ed~~etl~~Lrel~~d 234 (290)
T PRK12928 165 DVFNHNLETVPRLQKAVRRGADYQ----RSLDLLARAKELAPDIPTKSGLMLGL-----GE-TEDEVIETLRDLRAVGCD 234 (290)
T ss_pred hhhcccCcCcHHHHHHhCCCCCHH----HHHHHHHHHHHhCCCceecccEEEeC-----CC-CHHHHHHHHHHHHhcCCC
Confidence 8777666666543332 2233444 4557778899999 88877777443 22 468888999999999999
Q ss_pred EEEEcC----------CCCCCCHHHHHHHHHH
Q 014369 293 EISLGD----------TIGVGTPGTVVPMLEA 314 (426)
Q Consensus 293 ~I~l~D----------T~G~~~P~~v~~li~~ 314 (426)
.+.+.= -..+.+|+++..+-+.
T Consensus 235 ~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~ 266 (290)
T PRK12928 235 RLTIGQYLRPSLAHLPVQRYWTPEEFEALGQI 266 (290)
T ss_pred EEEEEcCCCCCccCCceeeccCHHHHHHHHHH
Confidence 888721 2356677777665443
No 122
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=96.70 E-value=0.54 Score=44.40 Aligned_cols=178 Identities=21% Similarity=0.201 Sum_probs=112.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--C----C----hhhHHHHHHc
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P----N----LKGFEAAIAA 213 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~----~----~~di~~a~~~ 213 (426)
..+.++..++++...+.|++.+-+.. .++ +.+.+.++. .++++.+.+ | . ...++.|++.
T Consensus 13 ~~t~~~i~~~~~~a~~~~~~av~v~p----~~v------~~~~~~l~~-~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~ 81 (203)
T cd00959 13 DATEEDIRKLCDEAKEYGFAAVCVNP----CFV------PLAREALKG-SGVKVCTVIGFPLGATTTEVKVAEAREAIAD 81 (203)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcH----HHH------HHHHHHcCC-CCcEEEEEEecCCCCCcHHHHHHHHHHHHHc
Confidence 44788888899999998998887642 111 111222221 234444333 2 1 1358899999
Q ss_pred CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 014369 214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE 293 (426)
Q Consensus 214 Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~ 293 (426)
|++.|-+.+..+... .-..++.++.+.++++.|+ |+.+.+-+. .+..+++.+...++.+.++|+|.
T Consensus 82 GAdevdvv~~~g~~~-----~~~~~~~~~ei~~v~~~~~--g~~lkvI~e-------~~~l~~~~i~~a~ria~e~GaD~ 147 (203)
T cd00959 82 GADEIDMVINIGALK-----SGDYEAVYEEIAAVVEACG--GAPLKVILE-------TGLLTDEEIIKACEIAIEAGADF 147 (203)
T ss_pred CCCEEEEeecHHHHh-----CCCHHHHHHHHHHHHHhcC--CCeEEEEEe-------cCCCCHHHHHHHHHHHHHhCCCE
Confidence 999999987654321 1234567888888888876 776664222 13346889999999999999998
Q ss_pred EEEc--CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369 294 ISLG--DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 352 (426)
Q Consensus 294 I~l~--DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~ 352 (426)
|-.. =+.+..+|+++..+-+.++..+|. ++.==.+ | ...++.=+++|++++-+
T Consensus 148 IKTsTG~~~~~at~~~v~~~~~~~~~~v~i-k~aGGik-t----~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 148 IKTSTGFGPGGATVEDVKLMKEAVGGRVGV-KAAGGIR-T----LEDALAMIEAGATRIGT 202 (203)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHhCCCceE-EEeCCCC-C----HHHHHHHHHhChhhccC
Confidence 8876 223446788888777776633332 1221112 3 35566667779887744
No 123
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=96.68 E-value=0.057 Score=51.77 Aligned_cols=188 Identities=16% Similarity=0.161 Sum_probs=110.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHH---HhHhcC-CCcEEEEe-C---ChhhHHHHHHc
Q 014369 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVME---AVRDLE-GARLPVLT-P---NLKGFEAAIAA 213 (426)
Q Consensus 142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~---~i~~~~-~~~l~~l~-~---~~~di~~a~~~ 213 (426)
+...+.++-.++++...+.|++.+-+... +++.. +. .+.. .+.++. .+.+.... + -...++.|++.
T Consensus 15 ~p~~~~~d~~~~~~~~~~~g~~av~v~~~----~~~~~-~~-~~~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~ 88 (235)
T cd00958 15 GPNPGLEDPEETVKLAAEGGADAVALTKG----IARAY-GR-EYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRL 88 (235)
T ss_pred CCCccccCHHHHHHHHHhcCCCEEEeChH----HHHhc-cc-ccCCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHC
Confidence 34557777788999999999998887521 11110 00 0000 000000 00000000 0 12458899999
Q ss_pred CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 014369 214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE 293 (426)
Q Consensus 214 Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~ 293 (426)
|++.|.+-+...+. +.++.++.+.++++.|++.|+++.+.... .|.......+++.+...++.+.++|+|.
T Consensus 89 Ga~~v~~~~~~~~~--------~~~~~~~~i~~v~~~~~~~g~~~iie~~~-~g~~~~~~~~~~~i~~~~~~a~~~GaD~ 159 (235)
T cd00958 89 GADAVGVTVYVGSE--------EEREMLEELARVAAEAHKYGLPLIAWMYP-RGPAVKNEKDPDLIAYAARIGAELGADI 159 (235)
T ss_pred CCCEEEEEEecCCc--------hHHHHHHHHHHHHHHHHHcCCCEEEEEec-cCCcccCccCHHHHHHHHHHHHHHCCCE
Confidence 99988555433221 23577888999999999999998754321 1111111234567777788899999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeC---CCcCcHHHHHHHHHHcCCCEEee
Q 014369 294 ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH---DTYGQSLPNILISLQMGISTVDC 352 (426)
Q Consensus 294 I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~H---Nd~GlA~ANaLaAl~aGa~~VD~ 352 (426)
|.+.=|. .++. ++.+.+..|. ++-+=+. .|..-.+.|+-.++++||+.|-.
T Consensus 160 Ik~~~~~---~~~~----~~~i~~~~~~-pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~v 213 (235)
T cd00958 160 VKTKYTG---DAES----FKEVVEGCPV-PVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAV 213 (235)
T ss_pred EEecCCC---CHHH----HHHHHhcCCC-CEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 9995332 2334 4444444443 3333232 45555778999999999997743
No 124
>PRK09234 fbiC FO synthase; Reviewed
Probab=96.63 E-value=0.15 Score=58.15 Aligned_cols=227 Identities=13% Similarity=0.095 Sum_probs=138.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeC-------------ChhhH
Q 014369 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTP-------------NLKGF 207 (426)
Q Consensus 142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~-------------~~~di 207 (426)
...++.++.++.++...+.|+..|-+-....|+. + .....++++.++ ..|++.+.+++| ..+-+
T Consensus 554 ~y~Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~~-~-~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l 631 (843)
T PRK09234 554 AYTLSLDEVADRAWEAWVAGATEVCMQGGIHPEL-P-GTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWL 631 (843)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCc-C-HHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHH
Confidence 4568999999999999999999988864444431 1 111223344444 346788877754 12346
Q ss_pred HHHHHcCCCEEEEeccCChHHH---hhhc---CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369 208 EAAIAAGAKEVAIFASASEAFS---KSNI---NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 281 (426)
Q Consensus 208 ~~a~~~Gv~~V~i~~~~Sd~~~---~~~~---~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~ 281 (426)
++..++|++.+.- ..-+++. +..+ .++.+ .-.++++.|+++|+++...++ ||-. -+++..++
T Consensus 632 ~~LkeAGLds~pg--t~aeil~d~vr~~i~p~k~~~~----~wle~i~~Ah~lGi~~~stmm--~G~~----Et~edrv~ 699 (843)
T PRK09234 632 TALREAGLDTIPG--TAAEILDDEVRWVLTKGKLPTA----EWIEVVTTAHEVGLRSSSTMM--YGHV----DTPRHWVA 699 (843)
T ss_pred HHHHHhCcCccCC--CchhhCCHHHHhhcCCCCCCHH----HHHHHHHHHHHcCCCcccceE--EcCC----CCHHHHHH
Confidence 7888999997752 1111111 1111 12322 235788899999999987777 5532 35777777
Q ss_pred HHHHHHhCCCC-----EEE-----EcCC--------CCCCCHHHHHHHHHHHHHhcCC--ceEEEEeCCCcCcHHHHHHH
Q 014369 282 VAKELHDMGCF-----EIS-----LGDT--------IGVGTPGTVVPMLEAVMAVVPV--EKLAVHLHDTYGQSLPNILI 341 (426)
Q Consensus 282 ~~~~l~~~Gad-----~I~-----l~DT--------~G~~~P~~v~~li~~l~~~~p~--~~i~~H~HNd~GlA~ANaLa 341 (426)
.+..+.++..+ .+. -.+| ....++.+..++++..|=.+|+ .+|..-. .++|. .-+..
T Consensus 700 hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~Lp~~i~~Iqa~w-v~lg~--~~~q~ 776 (843)
T PRK09234 700 HLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALARIMLHGRIDNIQTSW-VKLGV--EGTRA 776 (843)
T ss_pred HHHHHHhcCcccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhCCCCcccccchh-hhcCH--HHHHH
Confidence 77777777643 111 2233 1236788888888888777763 2333332 34443 34678
Q ss_pred HHHcCCCEEeecccCCCCCCCCCCCCC-cccHHHHHHHHHhCCCC
Q 014369 342 SLQMGISTVDCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVE 385 (426)
Q Consensus 342 Al~aGa~~VD~Sv~GlGecP~a~graG-Na~lEevv~~L~~lG~~ 385 (426)
++.+||+-+.+|+..===-++|....| -.+.++++.+.+..|..
T Consensus 777 ~L~~GaNDlgGtl~ee~i~~~aG~~~~~~~~~~~l~~~i~~aG~~ 821 (843)
T PRK09234 777 MLRGGANDLGGTLMEETISRMAGSEHGSAKTVAELEAIAEGAGRP 821 (843)
T ss_pred HHhcCCcCcccccccceeeeccCCCCCCCCCHHHHHHHHHHcCCC
Confidence 999999999888743110111111233 35688888888877764
No 125
>PRK06267 hypothetical protein; Provisional
Probab=96.61 E-value=0.32 Score=49.92 Aligned_cols=214 Identities=10% Similarity=0.024 Sum_probs=119.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEec-
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFA- 222 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~- 222 (426)
..+.++.++-++.+.+.|++.+=+...... ...+.+++.+.++.+.+.. ..+.....+.+.+...+++.+....
T Consensus 62 ~~s~eeI~eea~~~~~~Gv~~~~lsgG~~~----~~~el~~i~e~I~~~~~~~-~~~s~G~~d~~~~~~~~l~Gv~g~~E 136 (350)
T PRK06267 62 RRRVESILAEAILMKRIGWKLEFISGGYGY----TTEEINDIAEMIAYIQGCK-QYLNVGIIDFLNINLNEIEGVVGAVE 136 (350)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCC----CHHHHHHHHHHHHHhhCCc-eEeecccCCHHHHhhccccCceeeee
Confidence 568999999999999999984422211111 0112344555555444432 1222222333333333333222222
Q ss_pred cCCh-HHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE------
Q 014369 223 SASE-AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS------ 295 (426)
Q Consensus 223 ~~Sd-~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~------ 295 (426)
..++ .+.+..-+.+.++ ..+.++.+++.|+++.+.++ +|. .. +.+++.+.++.+.+++++.+.
T Consensus 137 T~~~~~~~~i~~~~s~ed----~~~~l~~ak~aGi~v~~g~I--iGl-gE---t~ed~~~~l~~l~~l~~d~v~~~~L~P 206 (350)
T PRK06267 137 TVNPKLHREICPGKPLDK----IKEMLLKAKDLGLKTGITII--LGL-GE---TEDDIEKLLNLIEELDLDRITFYSLNP 206 (350)
T ss_pred cCCHHHHHhhCCCCCHHH----HHHHHHHHHHcCCeeeeeEE--EeC-CC---CHHHHHHHHHHHHHcCCCEEEEEeeeE
Confidence 2223 3333333445444 44667789999999876655 442 22 367888889999999988654
Q ss_pred EcCC----CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE--eecccCCCCCCCCCCCCCc
Q 014369 296 LGDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV--DCSVAGLGGCPYAKGASGN 369 (426)
Q Consensus 296 l~DT----~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V--D~Sv~GlGecP~a~graGN 369 (426)
.++| .-..+|.++.+++..+|-.+|...|-.=.--+.+..++ .++.+||+.| --.+++++- ..|+
T Consensus 207 ~pGTp~~~~~~~s~~e~lr~ia~~Rl~lP~~~I~~~~~~~~l~~~~---~~~~aGaN~i~~~p~~g~ylt------~~g~ 277 (350)
T PRK06267 207 QKGTIFENKPSVTTLEYMNWVSSVRLNFPKIKIITGTWVDKLTNIG---PLIMSGSNVITKFPLFSMYGT------KEGK 277 (350)
T ss_pred CCCCcCCCCCCCCHHHHHHHHHHHHHHCCCCCcchhhHhHhcchhh---HHhhcCcceeeccchhccCcc------cCCC
Confidence 3454 23467789999999999888965442111101111111 2566999987 223444555 6777
Q ss_pred ccHHHHHHHHHh
Q 014369 370 VATEDVVYMLSG 381 (426)
Q Consensus 370 a~lEevv~~L~~ 381 (426)
..-+++-..=+.
T Consensus 278 ~~~~~~~~~~~~ 289 (350)
T PRK06267 278 RVENEIRWTGRE 289 (350)
T ss_pred CHHHHHHHhhhh
Confidence 777776655343
No 126
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=96.61 E-value=0.17 Score=52.40 Aligned_cols=230 Identities=13% Similarity=0.081 Sum_probs=139.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEEEeC------------Ch-hh
Q 014369 141 EKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTP------------NL-KG 206 (426)
Q Consensus 141 ~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~------------~~-~d 206 (426)
.+..++.++..+.++.+.+.|+..|=+-+...|...+. -..+.++.+++ .|++.+-++.+ .. +.
T Consensus 86 ~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~--y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~ 163 (370)
T COG1060 86 KAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLE--YYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEV 163 (370)
T ss_pred cccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchH--HHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHH
Confidence 45679999999999999999999988876666543211 13445555553 56666666553 12 34
Q ss_pred HHHHHHcCCCEEEEeccCChHHHhh------hcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369 207 FEAAIAAGAKEVAIFASASEAFSKS------NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA 280 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~Sd~~~~~------~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~ 280 (426)
+++..++|++.+-.+- .+++.+. ..+++.++= .++.+.|.++|++..+.+++.. ..++.+.-..+
T Consensus 164 l~~Lk~aGldsmpg~~--aeil~e~vr~~~~p~K~~~~~w----le~~~~Ah~lGI~~tatml~Gh---~E~~ed~~~hl 234 (370)
T COG1060 164 LKRLKEAGLDSMPGGG--AEILSEEVRKIHCPPKKSPEEW----LEIHERAHRLGIPTTATMLLGH---VETREDRIDHL 234 (370)
T ss_pred HHHHHHcCCCcCcCcc--eeechHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCCccceeEEEe---cCCHHHHHHHH
Confidence 7888899988654432 1222211 123344433 3677899999999887666432 11222222222
Q ss_pred HHHHHHH-hCC-CCEEEEc-----CC------CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCC
Q 014369 281 YVAKELH-DMG-CFEISLG-----DT------IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGI 347 (426)
Q Consensus 281 ~~~~~l~-~~G-ad~I~l~-----DT------~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa 347 (426)
.-++.+. ++| ...|.+. .+ ..-..+.+....|+..|-.++. .|...-=-.+-+++.-+.+|+.+||
T Consensus 235 ~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~-~i~~~~a~w~~~g~~~~~~~l~~Ga 313 (370)
T COG1060 235 EHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDN-NISNIQASWLRDGVILAQAALLSGA 313 (370)
T ss_pred HHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHccC-ccccccCcccccchHHHHHHHHhCc
Confidence 2333333 344 3343331 22 1224556666666666655552 2444444566777788899999999
Q ss_pred CEEeecccCCCCCCCCCCCCC-----cccHHHHHHHHHhCCCCC
Q 014369 348 STVDCSVAGLGGCPYAKGASG-----NVATEDVVYMLSGLGVET 386 (426)
Q Consensus 348 ~~VD~Sv~GlGecP~a~graG-----Na~lEevv~~L~~lG~~~ 386 (426)
+-+.+|+.. |+- .+ .+| +...|+++.+++..|..+
T Consensus 314 nD~ggt~~~--E~v-~~-~a~~~~~~~~~~eel~~~i~~aG~~p 353 (370)
T COG1060 314 NDLGGTGYE--EKV-NP-AAGAFSGDWRSVEELAALIKEAGRIP 353 (370)
T ss_pred ccCcCCCcc--ccc-cc-ccccccCCCCCHHHHHHHHHHcCCCe
Confidence 988888776 521 11 244 789999999999988754
No 127
>PLN02858 fructose-bisphosphate aldolase
Probab=96.61 E-value=0.41 Score=57.56 Aligned_cols=252 Identities=13% Similarity=0.090 Sum_probs=162.0
Q ss_pred CCCCchhhhHHHHhhc-CCCCccEEEeC--CccccCCCCCC--CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcccccc
Q 014369 106 NCNDKDIRDITNKFLK-GIPRFVKIVEV--GPRDGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLA 180 (426)
Q Consensus 106 ~~~~~~~~~~~~~~~~-~~p~~V~I~D~--TLRDG~Q~~~~--~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~ 180 (426)
|-|+.+..++.+-+.. .-|.++...|. --+++.+..+. .++.+....++++-.+.+.+.|=-.++..-++.+
T Consensus 1078 ~G~~G~~~tL~~~~~~l~~~~~v~~~~~l~~A~~~~yav~afn~~n~e~~~avi~aAe~~~sPvIl~~~~~~~~~~~--- 1154 (1378)
T PLN02858 1078 PGNVGDSTALAEVVKSWARPARSSTKELLLNAEKGGYAVGAFNVYNLEGIEAVVAAAEAEKSPAILQVHPGALKQGG--- 1154 (1378)
T ss_pred CCcCCChHHHHHHHHHhcCcCCccHHHHHHHHHHCCcEEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcC---
Confidence 3466665555443321 33444432222 13445554443 5789999999999999999988766554322222
Q ss_pred CHHHHHHHhH---hcCCCcEEEEe---CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc
Q 014369 181 DARDVMEAVR---DLEGARLPVLT---PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL 254 (426)
Q Consensus 181 D~~~v~~~i~---~~~~~~l~~l~---~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~ 254 (426)
.+ +...++ +...+.+.... .+.+.+..|+++|.+.|.+=.| ..+.+|+++.-++++++|+..
T Consensus 1155 -~~-~~~~~~~~a~~~~vpV~lHLDHg~~~~~i~~ai~~Gf~SVM~DgS----------~l~~eeNi~~t~~vv~~Ah~~ 1222 (1378)
T PLN02858 1155 -IP-LVSCCIAAAEQASVPITVHFDHGTSKHELLEALELGFDSVMVDGS----------HLSFTENISYTKSISSLAHSK 1222 (1378)
T ss_pred -HH-HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEEeCC----------CCCHHHHHHHHHHHHHHHHHc
Confidence 12 332232 11234444433 3578999999999998888544 235789999999999999999
Q ss_pred CCcEEEEEEeeecCCCC--------CCCCHHHHHHHHHHHHhCCCCEEEEc--CCCCCC---CHHHHHHHHHHHHHhcC-
Q 014369 255 SIPVRGYVSCVVGCPVE--------GAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG---TPGTVVPMLEAVMAVVP- 320 (426)
Q Consensus 255 G~~v~~~v~~~fg~pd~--------~r~~~~~l~~~~~~l~~~Gad~I~l~--DT~G~~---~P~~v~~li~~l~~~~p- 320 (426)
|+.|++.+-.+-|.++. ..++|+...++++ +.|+|.+.++ -.=|.- .|.==.++++.+++.++
T Consensus 1223 gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~---~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~ 1299 (1378)
T PLN02858 1223 GLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFID---ETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSK 1299 (1378)
T ss_pred CCEEEEEecccCCccCCccccccccCCCCHHHHHHHHH---hcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcC
Confidence 99999888776555543 1467777666665 5788865543 333332 24344567888888873
Q ss_pred -CceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHH
Q 014369 321 -VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLML 395 (426)
Q Consensus 321 -~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~ 395 (426)
++||.+|+ .-|..-.....|++.|+.-| |..||--..+.+.+.-...+|+.++..
T Consensus 1300 ~~vpLVlHG--gSG~~~~~~~~ai~~Gi~Ki------------------Ni~T~~~~a~~~~~~~~~~~~~~~~~~ 1355 (1378)
T PLN02858 1300 KGVLLVLHG--ASGLPESLIKECIENGVRKF------------------NVNTEVRTAYMEALSSPKKTDLIDVMS 1355 (1378)
T ss_pred CCCcEEEeC--CCCCCHHHHHHHHHcCCeEE------------------EeCHHHHHHHHHHHhCcccCCHHHHHH
Confidence 45777776 45666889999999999866 667777777666543333467665554
No 128
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=96.59 E-value=0.35 Score=46.92 Aligned_cols=187 Identities=12% Similarity=0.100 Sum_probs=101.3
Q ss_pred HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe-C---------------C---------hh
Q 014369 151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-P---------------N---------LK 205 (426)
Q Consensus 151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~---------------~---------~~ 205 (426)
.+.++.+.++|++.||++.+. ..+.+++.+.++. .+++++... + . .+
T Consensus 18 ~~~l~~~a~~Gf~~VEl~~~~-------~~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (258)
T PRK09997 18 LARFEKAAQCGFRGVEFMFPY-------DYDIEELKQVLAS-NKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAA 89 (258)
T ss_pred HHHHHHHHHhCCCEEEEcCCC-------CCCHHHHHHHHHH-cCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHH
Confidence 446788899999999997532 1356677766653 344444211 1 0 11
Q ss_pred hHHHHHHcCCCEEEEeccCChHHHhhhcCCC----HHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCS----IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 281 (426)
Q Consensus 206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s----~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~ 281 (426)
-++.|.+.|++.|.++....+ -+.+ .+...+.+.++.++|++.|+.+...-...+..+...-.+++...+
T Consensus 90 ~i~~a~~lga~~i~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~ 163 (258)
T PRK09997 90 AIRYARALGNKKINCLVGKTP------AGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGFHLTGTRQALK 163 (258)
T ss_pred HHHHHHHhCCCEEEECCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCCCccCCHHHHHH
Confidence 245566789998887643210 0112 234456667888889999987653211011111111234555555
Q ss_pred HHHHHHhCCCCEE-EEcCCCCCCCH-HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369 282 VAKELHDMGCFEI-SLGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG 359 (426)
Q Consensus 282 ~~~~l~~~Gad~I-~l~DT~G~~~P-~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe 359 (426)
+++ +.+.+.| -+-|+.=.... .++.+.++.+ ++--..+|.+|..+- +
T Consensus 164 ll~---~v~~~~v~l~~D~~h~~~~g~~~~~~~~~~----~~ri~~vHikD~~~~-----------------------~- 212 (258)
T PRK09997 164 LID---DVGCCNLKIQYDIYHMQRMEGELTNTMTQW----ADKIGHLQIADNPHR-----------------------G- 212 (258)
T ss_pred HHH---HhCCCCEEEEeEHHHhhhcCCcHHHHHHHh----hCcccEEEeCCCCCC-----------------------C-
Confidence 544 4444433 34565322211 1233333333 222367888885321 0
Q ss_pred CCCCCCCCCcccHHHHHHHHHhCCCCC
Q 014369 360 CPYAKGASGNVATEDVVYMLSGLGVET 386 (426)
Q Consensus 360 cP~a~graGNa~lEevv~~L~~lG~~~ 386 (426)
.+| .|..+...++.+|+..|++.
T Consensus 213 ---~~G-~G~id~~~i~~aL~~~Gy~G 235 (258)
T PRK09997 213 ---EPG-TGEINYDYLFKVIENSDYNG 235 (258)
T ss_pred ---CCC-CCcCCHHHHHHHHHHhCCCe
Confidence 133 68999999999999988763
No 129
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.58 E-value=0.2 Score=50.18 Aligned_cols=206 Identities=16% Similarity=0.080 Sum_probs=121.5
Q ss_pred CCCeEEEecCC--CCCcccc--ccCHHHHHHHhHhcC-CCcEEEEeC-----Ch----hhHHHHHHcCCCEEEEeccCCh
Q 014369 161 GLPVVEATSFV--SPKWVPQ--LADARDVMEAVRDLE-GARLPVLTP-----NL----KGFEAAIAAGAKEVAIFASASE 226 (426)
Q Consensus 161 Gv~~IEvG~~~--s~~~~p~--~~D~~~v~~~i~~~~-~~~l~~l~~-----~~----~di~~a~~~Gv~~V~i~~~~Sd 226 (426)
|++.|=+++.. ..-++|. +-+..+++..++.+- .+.+.+++- +. +-++...++|+.-|+|-..+.+
T Consensus 38 Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~p 117 (285)
T TIGR02320 38 GFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGL 117 (285)
T ss_pred CcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCC
Confidence 99988886532 2233453 245677777777543 233333331 22 3467778899999999765433
Q ss_pred HH---Hhhh---cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 014369 227 AF---SKSN---INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI 300 (426)
Q Consensus 227 ~~---~~~~---~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~ 300 (426)
.+ ...+ .-.+.++..++++.+++....-.+.|.+.- .++ ......+...+-+++..++|||.|.+. .
T Consensus 118 k~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiART-Da~----~~~~~~~eAi~Ra~ay~eAGAD~ifv~--~ 190 (285)
T TIGR02320 118 KKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARV-ESL----ILGKGMEDALKRAEAYAEAGADGIMIH--S 190 (285)
T ss_pred ccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEec-ccc----cccCCHHHHHHHHHHHHHcCCCEEEec--C
Confidence 21 1111 124678888777655444222222222110 000 011246778888999999999999997 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 014369 301 GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS 380 (426)
Q Consensus 301 G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~ 380 (426)
+..+++++.++++.+...+|..++-+.. ..++.-. .-.--++|+++|-....-+ |+-..++++++..+.
T Consensus 191 ~~~~~~ei~~~~~~~~~~~p~~pl~~~~-~~~~~~~--~~eL~~lG~~~v~~~~~~~--------~aa~~a~~~~~~~~~ 259 (285)
T TIGR02320 191 RKKDPDEILEFARRFRNHYPRTPLVIVP-TSYYTTP--TDEFRDAGISVVIYANHLL--------RAAYAAMQQVAERIL 259 (285)
T ss_pred CCCCHHHHHHHHHHhhhhCCCCCEEEec-CCCCCCC--HHHHHHcCCCEEEEhHHHH--------HHHHHHHHHHHHHHH
Confidence 4678999999999998877766674433 2233322 3344477999885443332 455666777777666
Q ss_pred hCCC
Q 014369 381 GLGV 384 (426)
Q Consensus 381 ~lG~ 384 (426)
..|.
T Consensus 260 ~~g~ 263 (285)
T TIGR02320 260 EHGR 263 (285)
T ss_pred HcCC
Confidence 5443
No 130
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=96.58 E-value=0.21 Score=49.80 Aligned_cols=201 Identities=17% Similarity=0.211 Sum_probs=132.1
Q ss_pred cccCCCCCC--CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc---CCCcEEEEe---CChhh
Q 014369 135 RDGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLT---PNLKG 206 (426)
Q Consensus 135 RDG~Q~~~~--~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~---~~~~d 206 (426)
+++.+..+. ....+....|.++-.+.+-++|=-.+...-++. .-...+...++.+ -++.+.... ...++
T Consensus 14 ke~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~---gg~~~~~~~v~~~a~~~~vPV~lHlDHg~~~~~ 90 (286)
T COG0191 14 KENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAAKYA---GGADSLAHMVKALAEKYGVPVALHLDHGASFED 90 (286)
T ss_pred HHcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHHHHh---chHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH
Confidence 444454443 468899999999999999998877765432221 1022333333321 124444433 35789
Q ss_pred HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--CCCCHHHHH---H
Q 014369 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--GAIPPSKVA---Y 281 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--~r~~~~~l~---~ 281 (426)
+..++++|...|.+=-|. .+.+|+++..++++++|+..|+.|++.|-+.-|-+|. ...+++.+. +
T Consensus 91 ~~~ai~~GFsSvMiDgS~----------~~~eENi~~tkevv~~ah~~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~e 160 (286)
T COG0191 91 CKQAIRAGFSSVMIDGSH----------LPFEENIAITKEVVEFAHAYGVSVEAELGTLGGEEDGVVLYTDPADLTDPEE 160 (286)
T ss_pred HHHHHhcCCceEEecCCc----------CCHHHHHHHHHHHHHHHHHcCCcEEEEeccccCccCCcccccchhhhCCHHH
Confidence 999999999988874442 3478999999999999999999999988887666662 223333222 2
Q ss_pred HHHHHHhCCCCEE--EEcCCCCCCCHHHH---HHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369 282 VAKELHDMGCFEI--SLGDTIGVGTPGTV---VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 282 ~~~~l~~~Gad~I--~l~DT~G~~~P~~v---~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD 351 (426)
..+.....|+|.+ .|.-.=|.-.|... .++++.+++..+ +||.+|+=. |........|+..|+.-|+
T Consensus 161 a~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~-~PlVlHGgS--Gip~~eI~~aI~~GV~KvN 232 (286)
T COG0191 161 ALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVS-LPLVLHGGS--GIPDEEIREAIKLGVAKVN 232 (286)
T ss_pred HHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHhC-CCEEEeCCC--CCCHHHHHHHHHhCceEEe
Confidence 2333345678844 45555555443221 345667777666 468877755 9999999999999998663
No 131
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=96.57 E-value=0.48 Score=48.50 Aligned_cols=224 Identities=14% Similarity=0.095 Sum_probs=148.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcC---CCcEEE-Ee-CChhhHHHHHHcCCC
Q 014369 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE---GARLPV-LT-PNLKGFEAAIAAGAK 216 (426)
Q Consensus 142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~---~~~l~~-l~-~~~~di~~a~~~Gv~ 216 (426)
.+.++.++.++-|+...+.|.....++.-...+. .+.+++.+.++.+. ++++.+ +. -+.+.++...++|++
T Consensus 81 ~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~----~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd 156 (335)
T COG0502 81 RKLMEVEEILEAAKKAKAAGATRFCMGAAGRGPG----RDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVD 156 (335)
T ss_pred hhcCCHHHHHHHHHHHHHcCCceEEEEEeccCCC----ccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHcChh
Confidence 3467899999999999999977777764322111 35677777777554 333322 11 246778889999999
Q ss_pred EEEEeccCChHHHh-hhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC-CCEE
Q 014369 217 EVAIFASASEAFSK-SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEI 294 (426)
Q Consensus 217 ~V~i~~~~Sd~~~~-~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G-ad~I 294 (426)
.+.--+-+|+-|-. ..-..|.++=+ +.++.+|+.|++|..-.. +|-. -+.++-.+.+..|.+.. +++|
T Consensus 157 ~ynhNLeTs~~~y~~I~tt~t~edR~----~tl~~vk~~Gi~vcsGgI--~GlG----Es~eDri~~l~~L~~l~~pdsV 226 (335)
T COG0502 157 RYNHNLETSPEFYENIITTRTYEDRL----NTLENVREAGIEVCSGGI--VGLG----ETVEDRAELLLELANLPTPDSV 226 (335)
T ss_pred heecccccCHHHHcccCCCCCHHHHH----HHHHHHHHcCCccccceE--ecCC----CCHHHHHHHHHHHHhCCCCCee
Confidence 88776655654433 23355666554 667789999999875444 3332 24566667777788887 7776
Q ss_pred EE------cCC----CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCC
Q 014369 295 SL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAK 364 (426)
Q Consensus 295 ~l------~DT----~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~ 364 (426)
-| ++| .--..|.+..+.|+..|-.+|...|-+- =..-.+.-...-.++.+||+-|=++. .+.
T Consensus 227 PIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s-~gr~~~~~~~q~~~~~aGansi~~g~-~~l------ 298 (335)
T COG0502 227 PINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLS-AGRETMLPELQALAFMAGANSIFVGD-KYL------ 298 (335)
T ss_pred eeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEcc-CCcccccHHHHHHHHHhccceeeecc-eEe------
Confidence 54 222 3356788899999999988996444332 23334444556778899999876665 222
Q ss_pred CCCCcccHHHHHHHHHhCCCCCCc
Q 014369 365 GASGNVATEDVVYMLSGLGVETNV 388 (426)
Q Consensus 365 graGNa~lEevv~~L~~lG~~~~i 388 (426)
-+.|...|+-...++.+|.....
T Consensus 299 -tt~~~~~e~D~~~l~~lgl~~e~ 321 (335)
T COG0502 299 -TTPGPDEDKDLELLKDLGLEPEL 321 (335)
T ss_pred -ecCCCCchhHHHHHHHcCCCccc
Confidence 23448889999999998877543
No 132
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=96.56 E-value=0.19 Score=51.17 Aligned_cols=138 Identities=14% Similarity=0.167 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC----ChhhHHHHHHcCCCEEE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP----NLKGFEAAIAAGAKEVA 219 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----~~~di~~a~~~Gv~~V~ 219 (426)
.++.++..++++.+.+.|+..|.++- ..|-.- .|..++++.++. .+..+...+- +.+-++...+.|++.|.
T Consensus 36 ~l~~e~~~~ii~~~~~~g~~~v~~~G-GEPll~---~~~~~ii~~~~~-~g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~ 110 (358)
T TIGR02109 36 ELTTEEWTDVLTQAAELGVLQLHFSG-GEPLAR---PDLVELVAHARR-LGLYTNLITSGVGLTEARLDALADAGLDHVQ 110 (358)
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEEeC-cccccc---ccHHHHHHHHHH-cCCeEEEEeCCccCCHHHHHHHHhCCCCEEE
Confidence 57899999999999999998887753 222111 234556665553 2444443332 23557777889999999
Q ss_pred EeccCC--hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369 220 IFASAS--EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (426)
Q Consensus 220 i~~~~S--d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l 296 (426)
|.+... +.|.+ ++ .....++++.+.++++++.|+.+.+++. + ++...+++.++++.+.+.|++.+.+
T Consensus 111 iSldg~~~e~~d~--~r-g~~g~f~~v~~~i~~l~~~g~~v~v~~v--v-----~~~N~~~l~~~~~~~~~lg~~~i~~ 179 (358)
T TIGR02109 111 LSFQGVDEALADR--IA-GYKNAFEQKLAMARAVKAAGLPLTLNFV--I-----HRHNIDQIPEIIELAIELGADRVEL 179 (358)
T ss_pred EeCcCCCHHHHHH--hc-CCccHHHHHHHHHHHHHhCCCceEEEEE--e-----ccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 887543 23433 22 1234677788888999999998775443 2 3456788888999999999998876
No 133
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.53 E-value=0.38 Score=47.34 Aligned_cols=182 Identities=11% Similarity=0.003 Sum_probs=116.1
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCC---CCCccccccCHHHHHHHhH---hcCCCcEEEEeCChhhHHHHHHcCCCEE
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVR---DLEGARLPVLTPNLKGFEAAIAAGAKEV 218 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~~~v~~~i~---~~~~~~l~~l~~~~~di~~a~~~Gv~~V 218 (426)
=+.++..++|+.+.++|+..+=-|+|- +|....-+ . .+-++.++ +-.++.+..=+....+++.+.+ .+|.+
T Consensus 26 Es~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~-G-~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e-~vdil 102 (250)
T PRK13397 26 ESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGL-G-LQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYD-YLDVI 102 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCC-C-HHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh-cCCEE
Confidence 377888999999999999999999763 23221111 1 12233332 2234554444457788898888 69988
Q ss_pred EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 014369 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD 298 (426)
Q Consensus 219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~D 298 (426)
.|.... +.- .++++++-+.|..|- ++. ....+++++...++.+.+.|...|.|+-
T Consensus 103 qIgs~~----------~~n-------~~LL~~va~tgkPVi--lk~------G~~~t~~e~~~A~e~i~~~Gn~~i~L~e 157 (250)
T PRK13397 103 QVGARN----------MQN-------FEFLKTLSHIDKPIL--FKR------GLMATIEEYLGALSYLQDTGKSNIILCE 157 (250)
T ss_pred EECccc----------ccC-------HHHHHHHHccCCeEE--EeC------CCCCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 886331 111 255566667788776 332 1146789999999999999998888886
Q ss_pred --CCCCCCHHH-HH--HHHHHHHHhcCCceEEE---EeCCCcCcHHHHHHHHHHcCCC--EEeeccc
Q 014369 299 --TIGVGTPGT-VV--PMLEAVMAVVPVEKLAV---HLHDTYGQSLPNILISLQMGIS--TVDCSVA 355 (426)
Q Consensus 299 --T~G~~~P~~-v~--~li~~l~~~~p~~~i~~---H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~ 355 (426)
+.++-+|.+ +. .-+..+++.++ .+|.+ |.=...-+-.+-+++|+.+||+ .|+.-..
T Consensus 158 Rg~~~Y~~~~~n~~dl~ai~~lk~~~~-lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~ 223 (250)
T PRK13397 158 RGVRGYDVETRNMLDIMAVPIIQQKTD-LPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHPD 223 (250)
T ss_pred cccCCCCCccccccCHHHHHHHHHHhC-CCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecCC
Confidence 444444433 22 33566666553 24333 5433333445889999999999 8876554
No 134
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=96.52 E-value=0.4 Score=48.77 Aligned_cols=144 Identities=19% Similarity=0.135 Sum_probs=102.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc-cCHHHHHHHhHhcCCCcEEEEeCC----hhhHHHHHHcCCCEE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPN----LKGFEAAIAAGAKEV 218 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~~----~~di~~a~~~Gv~~V 218 (426)
.++.++..++++...+.||+-|=++-. .|-+ .|..++.+.+++. +..-.+++.| .+..+...++|+++|
T Consensus 42 ~Ls~eei~~~~~~~~~~Gv~kvRlTGG-----EPllR~dl~eIi~~l~~~-~~~~islTTNG~~L~~~a~~Lk~AGl~rV 115 (322)
T COG2896 42 LLSLEEIRRLVRAFAELGVEKVRLTGG-----EPLLRKDLDEIIARLARL-GIRDLSLTTNGVLLARRAADLKEAGLDRV 115 (322)
T ss_pred cCCHHHHHHHHHHHHHcCcceEEEeCC-----CchhhcCHHHHHHHHhhc-ccceEEEecchhhHHHHHHHHHHcCCcEE
Confidence 579999999999999999999999742 3433 4666666666654 4444566655 245667788999999
Q ss_pred EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC--EEE
Q 014369 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF--EIS 295 (426)
Q Consensus 219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad--~I~ 295 (426)
+|.+-.=|......+. ....++++.+-+++|.+.|+. |-++.-.. - ..+.+++.++++.+.+.|+. -|-
T Consensus 116 NVSLDsld~e~f~~IT--~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~-----k-gvNd~ei~~l~e~~~~~~~~lrfIE 187 (322)
T COG2896 116 NVSLDSLDPEKFRKIT--GRDRLDRVLEGIDAAVEAGLTPVKLNTVLM-----K-GVNDDEIEDLLEFAKERGAQLRFIE 187 (322)
T ss_pred EeecccCCHHHHHHHh--CCCcHHHHHHHHHHHHHcCCCceEEEEEEe-----c-CCCHHHHHHHHHHHhhcCCceEEEE
Confidence 9997554433333332 233478888999999999995 77554322 1 25678899999999999864 677
Q ss_pred EcCCCC
Q 014369 296 LGDTIG 301 (426)
Q Consensus 296 l~DT~G 301 (426)
+.|+-.
T Consensus 188 ~m~~g~ 193 (322)
T COG2896 188 LMPLGE 193 (322)
T ss_pred EeecCc
Confidence 777654
No 135
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.031 Score=57.46 Aligned_cols=105 Identities=22% Similarity=0.189 Sum_probs=75.5
Q ss_pred CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369 202 PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 281 (426)
Q Consensus 202 ~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~ 281 (426)
.+.++++.+++.|+|.|.+..+.--....+ .+.+.++ +.+.|++|+++|.++.+.+.... .....+.+.+
T Consensus 14 g~l~~l~~ai~~GADaVY~G~~~~~~R~~a-~nfs~~~----l~e~i~~ah~~gkk~~V~~N~~~-----~~~~~~~~~~ 83 (347)
T COG0826 14 GNLEDLKAAIAAGADAVYIGEKEFGLRRRA-LNFSVED----LAEAVELAHSAGKKVYVAVNTLL-----HNDELETLER 83 (347)
T ss_pred CCHHHHHHHHHcCCCEEEeCCccccccccc-ccCCHHH----HHHHHHHHHHcCCeEEEEecccc-----ccchhhHHHH
Confidence 478999999999999988875511111222 3455555 67899999999998876555421 1233456788
Q ss_pred HHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEE
Q 014369 282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV 326 (426)
Q Consensus 282 ~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~ 326 (426)
..+.+.++|+|.|.++|- -+|..+++..|+.+|.+
T Consensus 84 ~l~~l~e~GvDaviv~Dp----------g~i~l~~e~~p~l~ih~ 118 (347)
T COG0826 84 YLDRLVELGVDAVIVADP----------GLIMLARERGPDLPIHV 118 (347)
T ss_pred HHHHHHHcCCCEEEEcCH----------HHHHHHHHhCCCCcEEE
Confidence 999999999999999995 46778888888755444
No 136
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=96.51 E-value=0.36 Score=46.50 Aligned_cols=189 Identities=18% Similarity=0.131 Sum_probs=101.1
Q ss_pred HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe-C---------------C-----h----h
Q 014369 151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-P---------------N-----L----K 205 (426)
Q Consensus 151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~---------------~-----~----~ 205 (426)
.+.++.+.++|++.||+..+.. .+..++.+.++. .++++.++. + . . +
T Consensus 17 ~e~~~~~~e~G~~~vEl~~~~~-------~~~~~l~~~l~~-~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (254)
T TIGR03234 17 LERFAAAAQAGFTGVEYLFPYD-------WDAEALKARLAA-AGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVAL 88 (254)
T ss_pred HHHHHHHHHcCCCEEEecCCcc-------CCHHHHHHHHHH-cCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHH
Confidence 3456666788999999975321 234455544442 455555442 1 0 0 1
Q ss_pred hHHHHHHcCCCEEEEeccCChHHHhhhcCCC----HHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCS----IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 281 (426)
Q Consensus 206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s----~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~ 281 (426)
-++.|.+.|++.|++.....+ .+.+ .+...+.+.+++++|++.|+.+...-..-+.+|...-.+++...+
T Consensus 89 ~i~~a~~lg~~~i~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~~~~~ 162 (254)
T TIGR03234 89 AIAYARALGCPQVNCLAGKRP------AGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTEQALA 162 (254)
T ss_pred HHHHHHHhCCCEEEECcCCCC------CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHHHHHH
Confidence 345667789999887644211 0111 234556678888999999987652111001111111234555555
Q ss_pred HHHHHHhCCCCEE-EEcCCCCCCCH-HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369 282 VAKELHDMGCFEI-SLGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG 359 (426)
Q Consensus 282 ~~~~l~~~Gad~I-~l~DT~G~~~P-~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe 359 (426)
+++ +.+.+.+ ..-|+.=...- +...++++.+. + --..+|..|+.|. .
T Consensus 163 li~---~v~~~~~~i~~D~~h~~~~~e~~~~~i~~~~---~-~i~~vHi~D~~~~-----------------------~- 211 (254)
T TIGR03234 163 VID---DVGRENLKLQYDLYHMQRMGGDLARTLAAYA---A-HIGHVQIADNPGR-----------------------H- 211 (254)
T ss_pred HHH---HhCCCCEeEeeehhhhhhhCCCHHHHHHHhh---c-cEeEEEeCCCCCC-----------------------C-
Confidence 554 4443333 44565432211 12333333332 2 2367888775320 0
Q ss_pred CCCCCCCCCcccHHHHHHHHHhCCCCCCc
Q 014369 360 CPYAKGASGNVATEDVVYMLSGLGVETNV 388 (426)
Q Consensus 360 cP~a~graGNa~lEevv~~L~~lG~~~~i 388 (426)
.+| .|..+..+++..|+..|++.-+
T Consensus 212 ---~~G-~G~id~~~il~~L~~~gy~g~~ 236 (254)
T TIGR03234 212 ---EPG-TGEINYRFLFAVLDRLGYDGWV 236 (254)
T ss_pred ---CCC-CCccCHHHHHHHHHHCCCCceE
Confidence 123 6899999999999998887433
No 137
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=96.50 E-value=0.3 Score=50.58 Aligned_cols=164 Identities=16% Similarity=0.118 Sum_probs=100.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc-cCHHHHHHHhHhcCCCcEEEEeCC----hhhHHHHHHcCCCEE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPN----LKGFEAAIAAGAKEV 218 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~~----~~di~~a~~~Gv~~V 218 (426)
.++.++..++++.+.+.|+..|-++. +.|-+ .|..++++.++..++.....++-| .+.++...++|++.|
T Consensus 89 ~ls~eei~~~i~~~~~~Gv~~I~~tG-----GEPllr~dl~eli~~l~~~~gi~~i~itTNG~lL~~~~~~L~~aGld~V 163 (373)
T PLN02951 89 LLSQDEIVRLAGLFVAAGVDKIRLTG-----GEPTLRKDIEDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLTSL 163 (373)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEC-----CCCcchhhHHHHHHHHHhcCCCceEEEeeCcchHHHHHHHHHhCCCCeE
Confidence 47999999999999999999887753 12332 244566666666666643344333 245677788999999
Q ss_pred EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE--EE
Q 014369 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE--IS 295 (426)
Q Consensus 219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~--I~ 295 (426)
.|.+-..+.-....+.. ...++++.+.++.|++.|+ .|.+++... ...+.+++.++++.+.+.|+.. |.
T Consensus 164 nISLDsl~~e~~~~itr--~~~~~~vl~~I~~a~~~G~~~vkin~vv~------~g~N~~Ei~~li~~a~~~gi~vr~ie 235 (373)
T PLN02951 164 NISLDTLVPAKFEFLTR--RKGHDRVLESIDTAIELGYNPVKVNCVVM------RGFNDDEICDFVELTRDKPINVRFIE 235 (373)
T ss_pred EEeeccCCHHHHHHHhc--CCCHHHHHHHHHHHHHcCCCcEEEEEEec------CCCCHHHHHHHHHHHHhCCCeEEEEE
Confidence 99875432211112211 1124677788888999997 465444321 1245678889999888888653 44
Q ss_pred EcCCCCCCC----HHHHHHHHHHHHHhcC
Q 014369 296 LGDTIGVGT----PGTVVPMLEAVMAVVP 320 (426)
Q Consensus 296 l~DT~G~~~----P~~v~~li~~l~~~~p 320 (426)
+--..|... .....++.+.+.+.+|
T Consensus 236 ~mP~~~~~~~~~~~~~~~ei~~~l~~~~~ 264 (373)
T PLN02951 236 FMPFDGNVWNVKKLVPYAEMMDRIEQRFP 264 (373)
T ss_pred cccCCCCccccccCCCHHHHHHHHHHhcC
Confidence 444333211 1125666777766655
No 138
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=96.48 E-value=0.24 Score=47.73 Aligned_cols=162 Identities=19% Similarity=0.202 Sum_probs=102.7
Q ss_pred HHHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhc-CCCcEEE--EeCCh-hhHHHHHHcCCCEEEEec
Q 014369 151 VELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDL-EGARLPV--LTPNL-KGFEAAIAAGAKEVAIFA 222 (426)
Q Consensus 151 i~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~--l~~~~-~di~~a~~~Gv~~V~i~~ 222 (426)
.+-++.|.++|++.+=+ |.|+ |+++=..++++.+++. ++..+-+ ++.+. .-++..+++|++.|.+.+
T Consensus 15 ~~~i~~l~~~g~~~lH~DvmDG~Fv-----pn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~ 89 (220)
T PRK08883 15 GEDVEKVLAAGADVVHFDVMDNHYV-----PNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHV 89 (220)
T ss_pred HHHHHHHHHcCCCEEEEecccCccc-----CccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcc
Confidence 34567788889997655 5554 4443345667777764 4544443 45554 567888999999888754
Q ss_pred cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----cC
Q 014369 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----GD 298 (426)
Q Consensus 223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----~D 298 (426)
- +.+...++++++|++|+++...+. |. ++.+.+.++.+. +|.|-+ +.
T Consensus 90 E----------------a~~~~~~~l~~ik~~g~k~Glaln-----P~---Tp~~~i~~~l~~-----~D~vlvMtV~PG 140 (220)
T PRK08883 90 E----------------ASEHVDRTLQLIKEHGCQAGVVLN-----PA---TPLHHLEYIMDK-----VDLILLMSVNPG 140 (220)
T ss_pred c----------------CcccHHHHHHHHHHcCCcEEEEeC-----CC---CCHHHHHHHHHh-----CCeEEEEEecCC
Confidence 2 233456788899999999875443 32 466776666542 232222 33
Q ss_pred CCCCCCHHHHHHHHHHHHHhcC----CceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 299 TIGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 299 T~G~~~P~~v~~li~~l~~~~p----~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
+.|...=....+.++.+++..+ ..+|.+ |-|.-..|+-..+++||+.+
T Consensus 141 fgGq~fi~~~lekI~~l~~~~~~~~~~~~I~v----dGGI~~eni~~l~~aGAd~v 192 (220)
T PRK08883 141 FGGQSFIPHTLDKLRAVRKMIDESGRDIRLEI----DGGVKVDNIREIAEAGADMF 192 (220)
T ss_pred CCCceecHhHHHHHHHHHHHHHhcCCCeeEEE----ECCCCHHHHHHHHHcCCCEE
Confidence 4443332333345666666543 234555 88999999999999999977
No 139
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=96.46 E-value=0.74 Score=47.35 Aligned_cols=196 Identities=14% Similarity=0.084 Sum_probs=119.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc--cC---------HHHHHHHhHh---cCCCcEEEEe---CC---
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL--AD---------ARDVMEAVRD---LEGARLPVLT---PN--- 203 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~--~D---------~~~v~~~i~~---~~~~~l~~l~---~~--- 203 (426)
.+..++...++++-.+++-++|=-.++..-++++.. .+ ...+...++. -..+.+.... ..
T Consensus 23 ~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg~~~~~ 102 (345)
T cd00946 23 CTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVVLHTDHCAKKLL 102 (345)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCccc
Confidence 468888888999999999997655443211111100 00 0012222221 1234444433 24
Q ss_pred ----------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--
Q 014369 204 ----------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-- 271 (426)
Q Consensus 204 ----------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~-- 271 (426)
.+.++.+++.|...|.+=.| . .+.+|+++..++++++|+..|+.|++-|-.+-|.++.
T Consensus 103 ~~~~~~~~a~~~~~~~a~~~GftSVMiDgS--~--------lp~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~~ 172 (345)
T cd00946 103 PWFDGLLEADEEYFKQHGEPLFSSHMLDLS--E--------EPLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGVD 172 (345)
T ss_pred hhhHHHHHHHHHHHHHhccCCCceEEeeCC--C--------CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccCcc
Confidence 23344555778888866433 2 3678999999999999999999999888776444332
Q ss_pred --------CCCCHHHHHHHHHHHHh-CCCCEEEE--cCCCCCC---CHHHHHHHHHHH----HHhcC-----CceEEEEe
Q 014369 272 --------GAIPPSKVAYVAKELHD-MGCFEISL--GDTIGVG---TPGTVVPMLEAV----MAVVP-----VEKLAVHL 328 (426)
Q Consensus 272 --------~r~~~~~l~~~~~~l~~-~Gad~I~l--~DT~G~~---~P~~v~~li~~l----~~~~p-----~~~i~~H~ 328 (426)
..++|+...+++++.-. .|+|.+.+ .-.=|.- .|.==.++++.+ ++.++ .++|.+|+
T Consensus 173 ~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHG 252 (345)
T cd00946 173 NSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYVREKLGLADDKPLYFVFHG 252 (345)
T ss_pred cccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHHHHHHhhccccCCCCCEEEeC
Confidence 14799998888876533 47774443 3344443 232223344444 65552 34666665
Q ss_pred CCCcCcHHHHHHHHHHcCCCEEe
Q 014369 329 HDTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 329 HNd~GlA~ANaLaAl~aGa~~VD 351 (426)
.-|..-.....|++.|+.-|+
T Consensus 253 --gSG~~~e~i~kai~~GI~KiN 273 (345)
T cd00946 253 --GSGSTKEEIREAISYGVVKMN 273 (345)
T ss_pred --CCCCCHHHHHHHHHcCCeeEE
Confidence 558888999999999988554
No 140
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=96.40 E-value=0.57 Score=44.90 Aligned_cols=180 Identities=19% Similarity=0.182 Sum_probs=114.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--C---C-----hhhHHHHHH
Q 014369 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P---N-----LKGFEAAIA 212 (426)
Q Consensus 143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---~-----~~di~~a~~ 212 (426)
...+.++..++++...+.|+..+-+- |.|+| ...+.++ -.++++.+.+ | . ...++.|++
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv~----p~~v~------~a~~~l~-~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~ 81 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCVN----PSYVP------LAKELLK-GTEVRICTVVGFPLGASTTDVKLYETKEAIK 81 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEeC----HHHHH------HHHHHcC-CCCCeEEEEeCCCCCCCcHHHHHHHHHHHHH
Confidence 36788888899999998888776652 32222 1222222 1346666554 3 1 246788999
Q ss_pred cCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369 213 AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF 292 (426)
Q Consensus 213 ~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad 292 (426)
.|++.|-+.+..+... .-..+...+.+..+++.+. |+.+-+-+. .+..+.+.+...++.+.++|+|
T Consensus 82 ~GAdEiDvv~n~g~l~-----~g~~~~v~~ei~~i~~~~~--g~~lKvIlE-------~~~L~~~ei~~a~~ia~eaGAD 147 (211)
T TIGR00126 82 YGADEVDMVINIGALK-----DGNEEVVYDDIRAVVEACA--GVLLKVIIE-------TGLLTDEEIRKACEICIDAGAD 147 (211)
T ss_pred cCCCEEEeecchHhhh-----CCcHHHHHHHHHHHHHHcC--CCeEEEEEe-------cCCCCHHHHHHHHHHHHHhCCC
Confidence 9999999987755321 1245667777777777775 666554222 1335667888999999999999
Q ss_pred EEEEcCC--CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369 293 EISLGDT--IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 353 (426)
Q Consensus 293 ~I~l~DT--~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S 353 (426)
-|--.-- .+..+|+++..|-+.+...++. +.. =+-.|+ .-+++=+++|++++-+|
T Consensus 148 fvKTsTGf~~~gat~~dv~~m~~~v~~~v~I-Kaa-GGirt~----~~a~~~i~aGa~riGts 204 (211)
T TIGR00126 148 FVKTSTGFGAGGATVEDVRLMRNTVGDTIGV-KAS-GGVRTA----EDAIAMIEAGASRIGAS 204 (211)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHhccCCeE-EEe-CCCCCH----HHHHHHHHHhhHHhCcc
Confidence 8766522 3456888888877776654332 111 112233 55566677799887554
No 141
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.35 E-value=0.14 Score=51.05 Aligned_cols=211 Identities=15% Similarity=0.143 Sum_probs=134.3
Q ss_pred HHHHHHhCCCCeEEEecC--CCCCcccc--ccCHHHHHHHhHhcCC-CcEEEEeC---------C-hhhHHHHHHcCCCE
Q 014369 153 LIRRLVSSGLPVVEATSF--VSPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTP---------N-LKGFEAAIAAGAKE 217 (426)
Q Consensus 153 I~~~L~~~Gv~~IEvG~~--~s~~~~p~--~~D~~~v~~~i~~~~~-~~l~~l~~---------~-~~di~~a~~~Gv~~ 217 (426)
-+..+.++|++.+=++.. +..-+.|. .....+++..++++.+ +.+++++- | .+-++.+.++|+.-
T Consensus 30 sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~ag 109 (289)
T COG2513 30 SALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGAAG 109 (289)
T ss_pred HHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCcce
Confidence 366778999999988743 12333443 2456788888887643 45555552 1 24577888999999
Q ss_pred EEEeccCChH---HHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 014369 218 VAIFASASEA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI 294 (426)
Q Consensus 218 V~i~~~~Sd~---~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I 294 (426)
|+|-..+-+- |...+-=.+.+++.++++.+++.+++..+.+.+ =+.+++. + -.+...+-+++..++|+|.|
T Consensus 110 i~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~A-RTda~~~---~--~ld~AI~Ra~AY~eAGAD~i 183 (289)
T COG2513 110 IHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIA-RTDALLV---E--GLDDAIERAQAYVEAGADAI 183 (289)
T ss_pred eeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEe-ehHHHHh---c--cHHHHHHHHHHHHHcCCcEE
Confidence 9998766552 111222237889999988888777764443321 1111111 1 14555666777889999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHH
Q 014369 295 SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATED 374 (426)
Q Consensus 295 ~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEe 374 (426)
+.. |.-.++++..+.+.++ +|. ++-+=-+--..+-..--|+ ++|+++|-..+..+ |+.+.+++.
T Consensus 184 f~~---al~~~e~i~~f~~av~--~pl-~~N~t~~g~tp~~~~~~L~--~~Gv~~V~~~~~~~--------raa~~a~~~ 247 (289)
T COG2513 184 FPE---ALTDLEEIRAFAEAVP--VPL-PANITEFGKTPLLTVAELA--ELGVKRVSYGLTAF--------RAALKAAEQ 247 (289)
T ss_pred ccc---cCCCHHHHHHHHHhcC--CCe-eeEeeccCCCCCcCHHHHH--hcCceEEEECcHHH--------HHHHHHHHH
Confidence 975 5566888888887776 453 2333222222344444444 67999997666655 788999999
Q ss_pred HHHHHHhCCCC
Q 014369 375 VVYMLSGLGVE 385 (426)
Q Consensus 375 vv~~L~~lG~~ 385 (426)
++..+++-|..
T Consensus 248 ~~~~i~~~gt~ 258 (289)
T COG2513 248 AAREIRREGTQ 258 (289)
T ss_pred HHHHHHhcCch
Confidence 99988876643
No 142
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=96.34 E-value=1.1 Score=43.43 Aligned_cols=218 Identities=12% Similarity=0.040 Sum_probs=143.1
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEecCCC-CCccccccCHHHHHHHhHhcCCCcEEEEe--CChhhHHHHHHcCCCEEEEec
Q 014369 146 PTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVMEAVRDLEGARLPVLT--PNLKGFEAAIAAGAKEVAIFA 222 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~~~~di~~a~~~Gv~~V~i~~ 222 (426)
+++.-+.-+..|.+-|+..+-+.-... ...+|- -+..+.+..++...+..+.+.+ ....++++..+.++|.+-+=+
T Consensus 40 t~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl-~kf~d~lK~lke~~~l~inaHvGfvdE~~~eklk~~~vdvvsLDf 118 (275)
T COG1856 40 TTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPL-WKFKDELKALKERTGLLINAHVGFVDESDLEKLKEELVDVVSLDF 118 (275)
T ss_pred chHHHHHHHHHHHhcCceeEEEeCCcCCCCCccH-HHHHHHHHHHHHhhCeEEEEEeeeccHHHHHHHHHhcCcEEEEee
Confidence 343334555678889999877743322 223442 2334444444444456666655 246788999999999877643
Q ss_pred cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE---cCC
Q 014369 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL---GDT 299 (426)
Q Consensus 223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l---~DT 299 (426)
--.+--++..++. ....+.+.+.+++.++.|++|...|.... +.++...|+ +..+.+.++..|.+.| -=|
T Consensus 119 vgDn~vIk~vy~l--~ksv~dyl~~l~~L~e~~irvvpHitiGL---~~gki~~e~--kaIdiL~~~~~DalVl~vliPt 191 (275)
T COG1856 119 VGDNDVIKRVYKL--PKSVEDYLRSLLLLKENGIRVVPHITIGL---DFGKIHGEF--KAIDILVNYEPDALVLVVLIPT 191 (275)
T ss_pred cCChHHHHHHHcC--CccHHHHHHHHHHHHHcCceeceeEEEEe---ccCcccchH--HHHHHHhcCCCCeEEEEEEecC
Confidence 3333334444443 22344556777889999999988887432 334444443 5677888888886654 345
Q ss_pred CCCC-------CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHH-HHHHHHcCCCEEeecccCCCCCCCCCCCCCccc
Q 014369 300 IGVG-------TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPN-ILISLQMGISTVDCSVAGLGGCPYAKGASGNVA 371 (426)
Q Consensus 300 ~G~~-------~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~AN-aLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~ 371 (426)
.|.- .|+++.+.++..|+.+|. ++.+-|---+|-.--- --.|+.+|+|.|.--..|.+| -++-..
T Consensus 192 pGtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~~gVd~It~P~~~t~e------~ak~~r 264 (275)
T COG1856 192 PGTKMGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVLAGVDRITFPPRGTIE------YAKSIR 264 (275)
T ss_pred CchhccCCCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHHHHHHHHHcCCceeecCCcccee------hhhhhh
Confidence 5531 357888888888999998 7888888888876433 346899999999999999999 666666
Q ss_pred HHHHHHH
Q 014369 372 TEDVVYM 378 (426)
Q Consensus 372 lEevv~~ 378 (426)
.++++.+
T Consensus 265 ~i~~~~~ 271 (275)
T COG1856 265 DIEIIYE 271 (275)
T ss_pred hhhhhhh
Confidence 6666553
No 143
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=96.32 E-value=0.88 Score=44.24 Aligned_cols=202 Identities=16% Similarity=0.137 Sum_probs=104.1
Q ss_pred HHHHHHHhCCCCeEEEecCCCCCccc-cc--cCHHHHHHHhHhcCCCcEEEEeC---C-----h-----------hhHHH
Q 014369 152 ELIRRLVSSGLPVVEATSFVSPKWVP-QL--ADARDVMEAVRDLEGARLPVLTP---N-----L-----------KGFEA 209 (426)
Q Consensus 152 ~I~~~L~~~Gv~~IEvG~~~s~~~~p-~~--~D~~~v~~~i~~~~~~~l~~l~~---~-----~-----------~di~~ 209 (426)
+.++.+.++|++.+|+.......+.+ .+ .+.+++.+.++. .++++++..+ | . +.++.
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~-~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~ 92 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKE-NNIDVSVHAPYLINLASPDKEKVEKSIERLIDEIKR 92 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-cCCCEEEECCceecCCCCCHHHHHHHHHHHHHHHHH
Confidence 35667788999999996432212111 11 112333333332 3455555432 1 1 13456
Q ss_pred HHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHH--hcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369 210 AIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK--VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH 287 (426)
Q Consensus 210 a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak--~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~ 287 (426)
|.+.|++.|.+..... ...+.++.++++.+.++.+- +.|+.+ .+....+.+..--.+++.+.++++.+.
T Consensus 93 A~~lGa~~vv~h~g~~-------~~~~~e~~~~~~~~~l~~l~~~~~gv~l--~lEn~~~~~~~~~~~~~~~~~ll~~v~ 163 (273)
T smart00518 93 CEELGIKALVFHPGSY-------LKQSKEEALNRIIESLNEVIDETKGVVI--LLETTAGKGSQIGSTFEDLKEIIDLIK 163 (273)
T ss_pred HHHcCCCEEEEccccc-------cCCCHHHHHHHHHHHHHHHHhccCCcEE--EEeccCCCCCccCCCHHHHHHHHHhcC
Confidence 6678999887754321 12345666666655554443 344433 333221111111236677777776553
Q ss_pred hCCCCEEEEcCCC-----CC--CCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369 288 DMGCFEISLGDTI-----GV--GTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG 359 (426)
Q Consensus 288 ~~Gad~I~l~DT~-----G~--~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe 359 (426)
.. -..-.+-|+. |. ..|.++.++++.+.+.++ .--..+|+||..|. .|- -+.
T Consensus 164 ~~-~~~g~~lD~gH~~~~g~d~~~~~~~~~~i~~~~~~~g~~~I~~vHl~D~~~~----------~g~---------~~d 223 (273)
T smart00518 164 EL-DRIGVCIDTCHIFAAGYDINTVEGFEKVLEEFENVLGLEYLKAIHLNDSKIE----------LGS---------GKD 223 (273)
T ss_pred CC-CCeEEEEEccchhhccCCCCCHHHHHHHHHHHHHHhCHHhhceEEeecCCCc----------cCC---------CCc
Confidence 21 0111222332 22 247788888888776664 33478999998762 111 111
Q ss_pred CCCCCCCCCcccHHHHHHHHHhCCC
Q 014369 360 CPYAKGASGNVATEDVVYMLSGLGV 384 (426)
Q Consensus 360 cP~a~graGNa~lEevv~~L~~lG~ 384 (426)
+-.++| .|..+.+.+...|+..++
T Consensus 224 ~H~~~G-~G~id~~~~~~~l~~~~~ 247 (273)
T smart00518 224 RHENLG-EGYIGFEPFRLLMADKRF 247 (273)
T ss_pred cccCCC-CCCCChHHHHHHhhChhh
Confidence 223333 588999999888876433
No 144
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.25 E-value=0.54 Score=48.10 Aligned_cols=193 Identities=19% Similarity=0.169 Sum_probs=119.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecC-CCCCc--------cccc---cCHHHHHHHhHh-cC--CCcEEEEe---C--C
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSF-VSPKW--------VPQL---ADARDVMEAVRD-LE--GARLPVLT---P--N 203 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~-~s~~~--------~p~~---~D~~~v~~~i~~-~~--~~~l~~l~---~--~ 203 (426)
.+..++...++++-.+.+.++|=-.+. ..-++ +|+= .-.+.+...++. .+ ++.+.... . +
T Consensus 20 ~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~VPV~lHLDH~~~~~ 99 (340)
T cd00453 20 CVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKL 99 (340)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCCCEEEEcCCCCCCC
Confidence 467888889999999999998766554 11111 1110 002223333332 12 34444433 4 5
Q ss_pred hhhHHHHHHcC-----------CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC-
Q 014369 204 LKGFEAAIAAG-----------AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE- 271 (426)
Q Consensus 204 ~~di~~a~~~G-----------v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~- 271 (426)
.+.++.|+++| ...|.+=.| . .+.+|+++..++++++|+..|+.|++-|-.+-|.++.
T Consensus 100 ~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS--~--------l~~eeNi~~T~~vve~Ah~~gi~VEaElG~igG~ed~~ 169 (340)
T cd00453 100 LPWIDGLLDAGEKHFAATGKPLFSSHMIDLS--E--------ESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGV 169 (340)
T ss_pred HHHHHHHHHcCCccccccCCCCceeEEecCC--C--------CCHHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccCCc
Confidence 67899999999 666666333 2 3578999999999999999999999888876454433
Q ss_pred ---------CCCCHHHHHHHHHHHHhCC----CCEEEE--cCCCCCC---CHHHHHHHHHHHHHhc--------CCceEE
Q 014369 272 ---------GAIPPSKVAYVAKELHDMG----CFEISL--GDTIGVG---TPGTVVPMLEAVMAVV--------PVEKLA 325 (426)
Q Consensus 272 ---------~r~~~~~l~~~~~~l~~~G----ad~I~l--~DT~G~~---~P~~v~~li~~l~~~~--------p~~~i~ 325 (426)
..++|+...++++ +.| +|.+.+ .-.=|.- .|.==.++++.+++.+ ++.+|.
T Consensus 170 ~~~~~~~~~~yT~Peea~~Fv~---~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~~~~~~~~gl~~~~~pLV 246 (340)
T cd00453 170 DNSHMDASALYTQPEDVDYAYT---ELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQEYVSKKHNLPHNSLNFV 246 (340)
T ss_pred ccccccccccCCCHHHHHHHHH---HhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHHHHHHhhcccCCCCCceE
Confidence 1457888777775 455 554333 2233332 2322234455555544 245677
Q ss_pred EEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369 326 VHLHDTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 326 ~H~HNd~GlA~ANaLaAl~aGa~~VD 351 (426)
+|+ --|+.--....|+..|+.-|+
T Consensus 247 lHG--gSG~~~e~~~~ai~~Gi~KiN 270 (340)
T cd00453 247 FHG--GSGSTAQEIKDSVSYGVVKMN 270 (340)
T ss_pred EeC--CCCCCHHHHHHHHHcCCeEEE
Confidence 665 556677788889999987553
No 145
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.24 E-value=0.55 Score=44.48 Aligned_cols=166 Identities=16% Similarity=0.097 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecC-CCCCccccccCHHHHHHHhHhcCCCcEEE--EeCChhhHHHHHHcCCCEEEEe
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIF 221 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~~di~~a~~~Gv~~V~i~ 221 (426)
.+..+-.++++...+.|.+.|-+--. .... .+ .+.++.+++..++.+.+ +..+...++.+.++|++.|.+.
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~-----g~-~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~ 101 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTEPKYFQ-----GS-LEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLI 101 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCccccC-----CC-HHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEe
Confidence 35556789999999999998865311 1110 11 23445555433444443 2345668999999999999987
Q ss_pred ccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 014369 222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG 301 (426)
Q Consensus 222 ~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G 301 (426)
...-+ .+.+++++++++..|+.+.+.+. +++. ++.+.+.|++.|.+....+
T Consensus 102 ~~~~~--------------~~~~~~~~~~~~~~g~~~~v~v~-----------~~~e----~~~~~~~g~~~i~~t~~~~ 152 (217)
T cd00331 102 VAALD--------------DEQLKELYELARELGMEVLVEVH-----------DEEE----LERALALGAKIIGINNRDL 152 (217)
T ss_pred eccCC--------------HHHHHHHHHHHHHcCCeEEEEEC-----------CHHH----HHHHHHcCCCEEEEeCCCc
Confidence 54322 14567778888889988753221 2333 4556678999999887777
Q ss_pred CCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcH-HHHHHHHHHcCCCEE
Q 014369 302 VGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQS-LPNILISLQMGISTV 350 (426)
Q Consensus 302 ~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~V 350 (426)
...+..+ +++..+++.+| ..++-.= .|-. ..++...+++||+.|
T Consensus 153 ~~~~~~~-~~~~~l~~~~~~~~pvia~----gGI~s~edi~~~~~~Ga~gv 198 (217)
T cd00331 153 KTFEVDL-NTTERLAPLIPKDVILVSE----SGISTPEDVKRLAEAGADAV 198 (217)
T ss_pred cccCcCH-HHHHHHHHhCCCCCEEEEE----cCCCCHHHHHHHHHcCCCEE
Confidence 7676666 66777777763 3233221 1222 378888889999865
No 146
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=96.22 E-value=0.17 Score=52.87 Aligned_cols=166 Identities=17% Similarity=0.071 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-CCCcEEEE--eCCh-hh-HHHHHHcCCCEEE
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVL--TPNL-KG-FEAAIAAGAKEVA 219 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~l--~~~~-~d-i~~a~~~Gv~~V~ 219 (426)
.+.++.+++++.|.+.++..||+|.+.-.. .-.++++.+++. ++..+-+- +.+. .- ++.+.++|++.+.
T Consensus 182 ~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~------~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vT 255 (391)
T PRK13307 182 PDLEEVERVLSQLPKSDHIIIEAGTPLIKK------FGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVV 255 (391)
T ss_pred CCHHHHHHHHHhcccccceEEEECHHHHHH------hCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEE
Confidence 467888999999988878899999743110 112445555543 55444332 2221 22 7788899999988
Q ss_pred EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--
Q 014369 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG-- 297 (426)
Q Consensus 220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~-- 297 (426)
+...... +.+.++++.+|++|+++.+..+ + | .++.+. ++.+ ..++|.|.+.
T Consensus 256 VH~ea~~---------------~ti~~ai~~akk~GikvgVD~l---n-p---~tp~e~----i~~l-~~~vD~Vllht~ 308 (391)
T PRK13307 256 ISGLAPI---------------STIEKAIHEAQKTGIYSILDML---N-V---EDPVKL----LESL-KVKPDVVELHRG 308 (391)
T ss_pred EeccCCH---------------HHHHHHHHHHHHcCCEEEEEEc---C-C---CCHHHH----HHHh-hCCCCEEEEccc
Confidence 8765432 2356788899999988764222 1 1 122233 3333 5688888776
Q ss_pred -CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 298 -DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 298 -DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
|.-+. +. .-+.++.+++..+...|.+=+ |....|.-.++++||+++
T Consensus 309 vdp~~~--~~-~~~kI~~ikk~~~~~~I~VdG----GI~~eti~~l~~aGADiv 355 (391)
T PRK13307 309 IDEEGT--EH-AWGNIKEIKKAGGKILVAVAG----GVRVENVEEALKAGADIL 355 (391)
T ss_pred cCCCcc--cc-hHHHHHHHHHhCCCCcEEEEC----CcCHHHHHHHHHcCCCEE
Confidence 32222 22 223566777654444455543 778888889999999965
No 147
>PRK05481 lipoyl synthase; Provisional
Probab=96.22 E-value=0.21 Score=49.90 Aligned_cols=143 Identities=17% Similarity=0.224 Sum_probs=98.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcccc--ccCHHHHHHHhHh-cCCCcEEEEeCC----hhhHHHHHHcCCC
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LADARDVMEAVRD-LEGARLPVLTPN----LKGFEAAIAAGAK 216 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~--~~D~~~v~~~i~~-~~~~~l~~l~~~----~~di~~a~~~Gv~ 216 (426)
.++.++.++.++.+.+.|++.|-+......+ .|. .....++++.++. .+++++..+.+. .+.+..+.++|.+
T Consensus 79 s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d-~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~ 157 (289)
T PRK05481 79 PLDPDEPERVAEAVARMGLKYVVITSVDRDD-LPDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPD 157 (289)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEeeCCC-cccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcc
Confidence 4899999999999999999998886432211 010 1124455666664 567777777763 3678888899998
Q ss_pred EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 014369 217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI 294 (426)
Q Consensus 217 ~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I 294 (426)
.+....-.++... ..++. ....++..++++.+++. |+.+...++..| +. +.+++.+..+.+.+.+.+.+
T Consensus 158 i~~~~~ets~~vl-k~m~r--~~t~e~~le~i~~ar~~~pgi~~~t~~IvGf-----GE-T~ed~~~tl~~lrel~~d~v 228 (289)
T PRK05481 158 VFNHNLETVPRLY-KRVRP--GADYERSLELLKRAKELHPGIPTKSGLMVGL-----GE-TDEEVLEVMDDLRAAGVDIL 228 (289)
T ss_pred eeeccccChHHHH-HHhCC--CCCHHHHHHHHHHHHHhCCCCeEeeeeEEEC-----CC-CHHHHHHHHHHHHhcCCCEE
Confidence 8887765555322 23332 12344455778889999 999988887544 22 46888888889999999887
Q ss_pred EE
Q 014369 295 SL 296 (426)
Q Consensus 295 ~l 296 (426)
.+
T Consensus 229 ~i 230 (289)
T PRK05481 229 TI 230 (289)
T ss_pred EE
Confidence 77
No 148
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=96.21 E-value=0.54 Score=45.38 Aligned_cols=168 Identities=18% Similarity=0.181 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhc-CCCcEEE--EeCC-hhhHHHHHHcCCCEEE
Q 014369 148 GVKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDL-EGARLPV--LTPN-LKGFEAAIAAGAKEVA 219 (426)
Q Consensus 148 ~~ki~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~--l~~~-~~di~~a~~~Gv~~V~ 219 (426)
..-.+.++.|.+.|++.+=+ |.|+ |++.-....++.++.. ++..+-+ ++.+ ..-++.+.++|++.|.
T Consensus 19 ~~l~~~~~~l~~~~~~~~H~DimDg~fv-----pn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~it 93 (228)
T PTZ00170 19 SKLADEAQDVLSGGADWLHVDVMDGHFV-----PNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFT 93 (228)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccCccC-----CCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEE
Confidence 34456778888999987655 4444 4444444566666643 3554443 2334 3567888999999888
Q ss_pred EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE----E
Q 014369 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI----S 295 (426)
Q Consensus 220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I----~ 295 (426)
+..-..+ ..+.++++.+|++|+.+.+.+. | .++.+.+.++.+ .-.+|.| .
T Consensus 94 vH~ea~~---------------~~~~~~l~~ik~~G~~~gval~-----p---~t~~e~l~~~l~---~~~vD~Vl~m~v 147 (228)
T PTZ00170 94 FHIEATE---------------DDPKAVARKIREAGMKVGVAIK-----P---KTPVEVLFPLID---TDLVDMVLVMTV 147 (228)
T ss_pred EeccCCc---------------hHHHHHHHHHHHCCCeEEEEEC-----C---CCCHHHHHHHHc---cchhhhHHhhhc
Confidence 8654322 1145778888999988765443 2 246666665541 0011211 1
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 296 LGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 296 l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
-+...|...-.+..+.++.+++..+...|.+ |=|.-..|.-.+.++||+++
T Consensus 148 ~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~V----dGGI~~~ti~~~~~aGad~i 198 (228)
T PTZ00170 148 EPGFGGQSFMHDMMPKVRELRKRYPHLNIQV----DGGINLETIDIAADAGANVI 198 (228)
T ss_pred ccCCCCcEecHHHHHHHHHHHHhcccCeEEE----CCCCCHHHHHHHHHcCCCEE
Confidence 1223355444455556777777766434444 56777889999999999977
No 149
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.19 E-value=0.42 Score=45.45 Aligned_cols=181 Identities=13% Similarity=0.083 Sum_probs=105.4
Q ss_pred hcCCCCccEEEeCCccccCCCCCCCC-CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEE
Q 014369 120 LKGIPRFVKIVEVGPRDGLQNEKNTV-PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLP 198 (426)
Q Consensus 120 ~~~~p~~V~I~D~TLRDG~Q~~~~~f-~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~ 198 (426)
+..+|+-+.+.-.|+ -| ..+ +..+..++++++.+.|+..++++.+ +.++.++...++.+.
T Consensus 4 ~~~~~~~~~~~~~~~-~~-----~~~~~~~~i~~~a~~~~~~G~~~~~~~~~-------------~~~~~i~~~~~iPil 64 (219)
T cd04729 4 LEQLKGGLIVSCQAL-PG-----EPLHSPEIMAAMALAAVQGGAVGIRANGV-------------EDIRAIRARVDLPII 64 (219)
T ss_pred HHHhcCCeEEEccCC-CC-----CCcCcHHHHHHHHHHHHHCCCeEEEcCCH-------------HHHHHHHHhCCCCEE
Confidence 345688787776665 32 233 4556688999999999999996432 233444432333332
Q ss_pred E------------EeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEEee
Q 014369 199 V------------LTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS-IPVRGYVSCV 265 (426)
Q Consensus 199 ~------------l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G-~~v~~~v~~~ 265 (426)
+ +.+..+.++.+.++|++.|-+-.+... ..+ -+...+++++++++| +.+.+.
T Consensus 65 ~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~---------~p~--~~~~~~~i~~~~~~g~~~iiv~---- 129 (219)
T cd04729 65 GLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP---------RPD--GETLAELIKRIHEEYNCLLMAD---- 129 (219)
T ss_pred EEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC---------CCC--CcCHHHHHHHHHHHhCCeEEEE----
Confidence 1 112344789999999997666433211 000 013457777888888 544321
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--CCCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH-HHHHH
Q 014369 266 VGCPVEGAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNIL 340 (426)
Q Consensus 266 fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~--DT~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA-~ANaL 340 (426)
-.++++ ++.+.++|++.|.+. +..+.. ......++++.+++.+. .++-. .-|.. ..++.
T Consensus 130 -------v~t~~e----a~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~-ipvia----~GGI~~~~~~~ 193 (219)
T cd04729 130 -------ISTLEE----ALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALG-IPVIA----EGRINSPEQAA 193 (219)
T ss_pred -------CCCHHH----HHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcC-CCEEE----eCCCCCHHHHH
Confidence 123444 356778999988542 222211 11122367788877653 33443 45663 47888
Q ss_pred HHHHcCCCEE
Q 014369 341 ISLQMGISTV 350 (426)
Q Consensus 341 aAl~aGa~~V 350 (426)
.++++||+.|
T Consensus 194 ~~l~~GadgV 203 (219)
T cd04729 194 KALELGADAV 203 (219)
T ss_pred HHHHCCCCEE
Confidence 8899998865
No 150
>PRK01060 endonuclease IV; Provisional
Probab=96.16 E-value=0.95 Score=44.21 Aligned_cols=206 Identities=16% Similarity=0.099 Sum_probs=100.9
Q ss_pred HHHHHHHHHhCCCCeEEEecCCCCCccccccCHHH---HHHHhHhcCCCc---EEEEeC--------Ch-----------
Q 014369 150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARD---VMEAVRDLEGAR---LPVLTP--------NL----------- 204 (426)
Q Consensus 150 ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~---v~~~i~~~~~~~---l~~l~~--------~~----------- 204 (426)
-.+.++.+.++|++.||+.......+.+...+.++ +.+.++ -.+++ +.+..+ +.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~-~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~ 92 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACE-KYGISPEDILVHAPYLINLGNPNKEILEKSRDFLI 92 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHH-HcCCCCCceEEecceEecCCCCCHHHHHHHHHHHH
Confidence 34677888999999999953211111111112222 222222 12344 332221 11
Q ss_pred hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHH--HhcCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369 205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA--KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 282 (426)
Q Consensus 205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~A--k~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~ 282 (426)
+.++.|.+.|++.|.+...... .....+++++++.+.++.+ ...| |...|....+....--.+++.+.++
T Consensus 93 ~~i~~A~~lga~~vv~h~G~~~------~~~~~~~~~~~~~e~l~~l~~~~~g--v~l~iEn~~~~~~~~~~~~~~~~~l 164 (281)
T PRK01060 93 QEIERCAALGAKLLVFHPGSHL------GDIDEEDCLARIAESLNEALDKTQG--VTIVLENTAGQGSELGRRFEELARI 164 (281)
T ss_pred HHHHHHHHcCCCEEEEcCCcCC------CCCcHHHHHHHHHHHHHHHHhcCCC--CEEEEecCCCCCCcccCCHHHHHHH
Confidence 2345667789998777643210 0112334677777666654 3345 3433443211110011356666666
Q ss_pred HHHHHhCCCCEEEEcCCCCCC----CH-HHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 014369 283 AKELHDMGCFEISLGDTIGVG----TP-GTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG 356 (426)
Q Consensus 283 ~~~l~~~Gad~I~l~DT~G~~----~P-~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~G 356 (426)
.+.+.. ....=..-||.=.. .| ....++++.+.+..+ +--..+|+||..+.. ..+.+
T Consensus 165 ~~~v~~-~~~vg~~lD~gH~~~~g~d~~~~~~~~~~~~~~~~~~~~i~~vHl~D~~~~~--------~~~~d-------- 227 (281)
T PRK01060 165 IDGVED-KSRVGVCLDTCHAFAAGYDLREDFEGVLAEFDRIVGLDRLKVMHLNDSKNEF--------GSRKD-------- 227 (281)
T ss_pred HHhcCC-cccEEEEEeHHhHhhcCCChHHHHHHHHHHHHHhhChhheeEEEEecCCCcc--------cCCCC--------
Confidence 654422 11112333543211 22 344577777766554 224678999976521 00111
Q ss_pred CCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369 357 LGGCPYAKGASGNVATEDVVYMLSGLGVE 385 (426)
Q Consensus 357 lGecP~a~graGNa~lEevv~~L~~lG~~ 385 (426)
+..++| .|+.+.+.++..|+..|++
T Consensus 228 ---~H~~~G-~G~id~~~~~~~L~~~~y~ 252 (281)
T PRK01060 228 ---RHANLG-EGTIGFDALRYIVHDPRFD 252 (281)
T ss_pred ---cccCCc-CCcCCHHHHHHHHhCcccC
Confidence 112223 5889999999999986653
No 151
>PRK08005 epimerase; Validated
Probab=96.16 E-value=0.34 Score=46.39 Aligned_cols=162 Identities=14% Similarity=0.113 Sum_probs=105.7
Q ss_pred HHHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhcCCCcEE--EEeCC-hhhHHHHHHcCCCEEEEecc
Q 014369 151 VELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARLP--VLTPN-LKGFEAAIAAGAKEVAIFAS 223 (426)
Q Consensus 151 i~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~--~l~~~-~~di~~a~~~Gv~~V~i~~~ 223 (426)
.+-++.|.++|++.+=+ |.|+ |++.=...+++.+++..+..+- .++.+ ..-++..+++|++.|.+..-
T Consensus 16 ~~el~~l~~~g~d~lHiDvMDG~FV-----PN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~E 90 (210)
T PRK08005 16 AEALTALHDAPLGSLHLDIEDTSFI-----NNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAE 90 (210)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCcC-----CccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEEccc
Confidence 45677888899997555 5554 4443334566777755444443 34555 45688889999998877542
Q ss_pred CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE----EcCC
Q 014369 224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS----LGDT 299 (426)
Q Consensus 224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~----l~DT 299 (426)
+.+...++++++|++|+++...+. |. ++.+.+.++... +|.|- -+.-
T Consensus 91 ----------------a~~~~~~~l~~Ik~~G~k~GlAln-----P~---Tp~~~i~~~l~~-----vD~VlvMsV~PGf 141 (210)
T PRK08005 91 ----------------SVQNPSEILADIRAIGAKAGLALN-----PA---TPLLPYRYLALQ-----LDALMIMTSEPDG 141 (210)
T ss_pred ----------------CccCHHHHHHHHHHcCCcEEEEEC-----CC---CCHHHHHHHHHh-----cCEEEEEEecCCC
Confidence 223345788899999999875553 32 567777666542 23222 2445
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 300 IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 300 ~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
.|...=..+.+-|+.+++..+...|++ |=|....|+-...++||+.+
T Consensus 142 ~GQ~f~~~~~~KI~~l~~~~~~~~I~V----DGGI~~~~i~~l~~aGad~~ 188 (210)
T PRK08005 142 RGQQFIAAMCEKVSQSREHFPAAECWA----DGGITLRAARLLAAAGAQHL 188 (210)
T ss_pred ccceecHHHHHHHHHHHHhcccCCEEE----ECCCCHHHHHHHHHCCCCEE
Confidence 566555666667788777665423444 66888899999999999966
No 152
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=96.14 E-value=0.14 Score=51.65 Aligned_cols=141 Identities=17% Similarity=0.232 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEecCCCCCcccc--ccCHHHHHHHhHh-cCCCcEEEEeCC----hhhHHHHHHcCCCEE
Q 014369 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LADARDVMEAVRD-LEGARLPVLTPN----LKGFEAAIAAGAKEV 218 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~--~~D~~~v~~~i~~-~~~~~l~~l~~~----~~di~~a~~~Gv~~V 218 (426)
+.++.+++++.+.+.|++.|-+++-..+++ +. ..+..++++.++. .|++.+.++++. .+.++...++|.+.+
T Consensus 92 ~~eei~~~a~~~~~~GlkevvLTsv~~ddl-~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv~ 170 (302)
T TIGR00510 92 DPEEPAKLAETIKDMGLKYVVITSVDRDDL-EDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDVY 170 (302)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeecCCCc-ccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHHHcCchhh
Confidence 567789999999999999998876433221 11 1224555666664 477888888763 456777889999987
Q ss_pred EEeccCChHHHhh-hcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 014369 219 AIFASASEAFSKS-NINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS 295 (426)
Q Consensus 219 ~i~~~~Sd~~~~~-~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~ 295 (426)
...+-+++...+. .-+.+.++ ..++++.|++. |+.+...++..|| -+.+++.+..+.+.+.|++.+.
T Consensus 171 ~hnlEt~~~l~~~vrr~~t~e~----~Le~l~~ak~~~pgi~~~TgiIVGlG------ETeee~~etl~~Lrelg~d~v~ 240 (302)
T TIGR00510 171 NHNLETVERLTPFVRPGATYRW----SLKLLERAKEYLPNLPTKSGIMVGLG------ETNEEIKQTLKDLRDHGVTMVT 240 (302)
T ss_pred cccccchHHHHHHhCCCCCHHH----HHHHHHHHHHhCCCCeecceEEEECC------CCHHHHHHHHHHHHhcCCCEEE
Confidence 7765444433222 22334444 44677788887 7888877875542 2468888999999999999998
Q ss_pred Ec
Q 014369 296 LG 297 (426)
Q Consensus 296 l~ 297 (426)
|.
T Consensus 241 ig 242 (302)
T TIGR00510 241 LG 242 (302)
T ss_pred ee
Confidence 74
No 153
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=96.14 E-value=0.46 Score=48.07 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=95.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc-cCHHHHHHHhHhcCCCcEEEEeCC----hhhHHHHHHcCCCEE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPN----LKGFEAAIAAGAKEV 218 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~~----~~di~~a~~~Gv~~V 218 (426)
.++.++.+ +.+++.|+..|.+.- . .|-+ .|..++++.++.. +..+ .++-| .+.++...+.+...|
T Consensus 58 ~ls~ee~~---~~i~e~g~~~V~i~G-G----EPLL~pdl~eiv~~~~~~-g~~v-~l~TNG~ll~~~~~~l~~~~~~~i 127 (318)
T TIGR03470 58 RLSVEECL---RAVDECGAPVVSIPG-G----EPLLHPEIDEIVRGLVAR-KKFV-YLCTNALLLEKKLDKFEPSPYLTF 127 (318)
T ss_pred CCCHHHHH---HHHHHcCCCEEEEeC-c----cccccccHHHHHHHHHHc-CCeE-EEecCceehHHHHHHHHhCCCcEE
Confidence 45666544 456678998877742 1 2322 2445556555432 3333 33333 234666667787777
Q ss_pred EEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369 219 AIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG 297 (426)
Q Consensus 219 ~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~ 297 (426)
.|.+ +..+.|-+.. ..+..++++.+.++.+++.|+.|.++... + ...+++++.++++.+.+.|++.+.+.
T Consensus 128 ~VSLDG~~e~hd~~~---~~~g~f~~~l~~I~~l~~~G~~v~v~~tv-~-----~~~n~~ei~~~~~~~~~lGv~~i~i~ 198 (318)
T TIGR03470 128 SVHLDGLREHHDASV---CREGVFDRAVEAIREAKARGFRVTTNTTL-F-----NDTDPEEVAEFFDYLTDLGVDGMTIS 198 (318)
T ss_pred EEEEecCchhhchhh---cCCCcHHHHHHHHHHHHHCCCcEEEEEEE-e-----CCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 7764 3334443321 22345777888899999999987754432 1 24678999999999999999988773
Q ss_pred C---------CCCCCCHHHHHHHHHHHHHh
Q 014369 298 D---------TIGVGTPGTVVPMLEAVMAV 318 (426)
Q Consensus 298 D---------T~G~~~P~~v~~li~~l~~~ 318 (426)
- .--.+.+.+..++++.+.+.
T Consensus 199 p~~~~~~a~~~~~~l~~~e~~~~~~~~~~~ 228 (318)
T TIGR03470 199 PGYAYEKAPDQDHFLGRRQTKKLFREVLSN 228 (318)
T ss_pred cCcccccccccccccCHHHHHHHHHHHHhh
Confidence 1 12245677778887777653
No 154
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=96.12 E-value=0.49 Score=46.12 Aligned_cols=202 Identities=15% Similarity=0.101 Sum_probs=99.4
Q ss_pred HHHHHHHhCCCCeEEEecCCCCC-ccc-cc--cCHHHHHHHhHhcCCCcEEEEe-----------CC-----------hh
Q 014369 152 ELIRRLVSSGLPVVEATSFVSPK-WVP-QL--ADARDVMEAVRDLEGARLPVLT-----------PN-----------LK 205 (426)
Q Consensus 152 ~I~~~L~~~Gv~~IEvG~~~s~~-~~p-~~--~D~~~v~~~i~~~~~~~l~~l~-----------~~-----------~~ 205 (426)
+.++.+.++|++.||+...-... ..+ .+ .+..++.+.++. .++++.+++ ++ .+
T Consensus 20 e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~ 98 (284)
T PRK13210 20 ERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYE-TGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKK 98 (284)
T ss_pred HHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHH-cCCCceEEecccccCcCCCCCCHHHHHHHHHHHHH
Confidence 35566678999999997431100 000 11 112333333332 345555432 11 12
Q ss_pred hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (426)
Q Consensus 206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~ 285 (426)
-++.|.+.|++.|++... +.+.........+...+.+.+++++|+++|+.+.. ... +...-.+++.+..+++.
T Consensus 99 ~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l--E~~---~~~~~~~~~~~~~l~~~ 171 (284)
T PRK13210 99 AIRLAQDLGIRTIQLAGY--DVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV--EIM---DTPFMNSISKWKKWDKE 171 (284)
T ss_pred HHHHHHHhCCCEEEECCc--ccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE--Eec---CccccCCHHHHHHHHHH
Confidence 345667789999987421 10000000112456677788889999999987652 211 11112345555555543
Q ss_pred HHhCCCCEEEEc-CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCC
Q 014369 286 LHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAK 364 (426)
Q Consensus 286 l~~~Gad~I~l~-DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~ 364 (426)
.+-+.+.+. |+. .+.=. -......++. ...--..+|.+|..+.-.. ..|. .-. ..+
T Consensus 172 ---v~~~~~~~~~D~~-h~~~~-~~~~~~~l~~-~~~~i~~vHikD~~~~~~~------~~g~---------~~~--~p~ 228 (284)
T PRK13210 172 ---IDSPWLTVYPDVG-NLSAW-GNDVWSELKL-GIDHIAAIHLKDTYAVTET------SKGQ---------FRD--VPF 228 (284)
T ss_pred ---cCCCceeEEecCC-hhhhc-CCCHHHHHHH-hcCeEEEEEeccccccccC------CCCc---------ccc--ccC
Confidence 344444443 552 11100 0112223322 2222478899997642100 0011 001 112
Q ss_pred CCCCcccHHHHHHHHHhCCCC
Q 014369 365 GASGNVATEDVVYMLSGLGVE 385 (426)
Q Consensus 365 graGNa~lEevv~~L~~lG~~ 385 (426)
| .|+.+..+++.+|+..|++
T Consensus 229 G-~G~id~~~~~~~L~~~gy~ 248 (284)
T PRK13210 229 G-EGCVDFVGIFKTLKELNYR 248 (284)
T ss_pred C-CcccCHHHHHHHHHHcCCC
Confidence 3 6899999999999987765
No 155
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=96.12 E-value=0.16 Score=49.36 Aligned_cols=168 Identities=13% Similarity=0.120 Sum_probs=101.9
Q ss_pred HHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhcCCCcE--EEEeCC-hhhHHHHHHcCCCEEEEeccCCh
Q 014369 154 IRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARL--PVLTPN-LKGFEAAIAAGAKEVAIFASASE 226 (426)
Q Consensus 154 ~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~~~~~l--~~l~~~-~~di~~a~~~Gv~~V~i~~~~Sd 226 (426)
++.|.+ |++.+=+ |.|+ |+++=...+++.+++..+..+ -.++.+ ..-++..+++|++.|.+..-+.+
T Consensus 21 l~~l~~-g~d~lH~DiMDG~FV-----PN~tfg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~~ 94 (229)
T PRK09722 21 IEFLNS-KADYFHIDIMDGHFV-----PNLTLSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETIN 94 (229)
T ss_pred HHHHHh-CCCEEEEecccCccC-----CCcccCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCCc
Confidence 355666 8886555 5554 444333456777776544433 445655 45788999999998888643211
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHH
Q 014369 227 AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPG 306 (426)
Q Consensus 227 ~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~ 306 (426)
....++++++|++|+++...+. |. ++.+.+.++...+.-.=+=.+. +.-.|...-.
T Consensus 95 ---------------~~~~~~i~~Ik~~G~kaGlaln-----P~---T~~~~l~~~l~~vD~VLvMsV~-PGf~GQ~fi~ 150 (229)
T PRK09722 95 ---------------GQAFRLIDEIRRAGMKVGLVLN-----PE---TPVESIKYYIHLLDKITVMTVD-PGFAGQPFIP 150 (229)
T ss_pred ---------------chHHHHHHHHHHcCCCEEEEeC-----CC---CCHHHHHHHHHhcCEEEEEEEc-CCCcchhccH
Confidence 2345788899999999875543 32 5677777666532111111111 3444555555
Q ss_pred HHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369 307 TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 307 ~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD 351 (426)
.+.+-|+.+++..+...+.+..-=|=|.-..|+-...++||+.+=
T Consensus 151 ~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V 195 (229)
T PRK09722 151 EMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFI 195 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 566667777765432122333334668888999999999999773
No 156
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=96.11 E-value=1.8 Score=43.44 Aligned_cols=165 Identities=16% Similarity=0.151 Sum_probs=93.9
Q ss_pred EEEeCC---ccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHH---HHHHhHhcC---CCcEE
Q 014369 128 KIVEVG---PRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARD---VMEAVRDLE---GARLP 198 (426)
Q Consensus 128 ~I~D~T---LRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~---v~~~i~~~~---~~~l~ 198 (426)
=|+-+| +=||++ .++.+..++-+..+.+.|.+.|++|.-++.+..+.....+| +...++.+. ++.++
T Consensus 19 GIlNvTpDSFsdgg~----~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~IS 94 (282)
T PRK11613 19 GILNVTPDSFSDGGT----HNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWIS 94 (282)
T ss_pred EEEcCCCCCCCCCCC----CCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 345444 346655 36889999999999999999999996554222221211233 222333322 34444
Q ss_pred EEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC--CC-
Q 014369 199 VLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA--IP- 275 (426)
Q Consensus 199 ~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r--~~- 275 (426)
+=+.+.+-++.|+++|++.|.=..+.++ ++ +++.+++.|..+. ++..-|.|.... ..
T Consensus 95 IDT~~~~va~~AL~~GadiINDI~g~~d-----------~~-------~~~~~a~~~~~vV--lmh~~g~p~~~~~~~~y 154 (282)
T PRK11613 95 VDTSKPEVIRESAKAGAHIINDIRSLSE-----------PG-------ALEAAAETGLPVC--LMHMQGNPKTMQEAPKY 154 (282)
T ss_pred EECCCHHHHHHHHHcCCCEEEECCCCCC-----------HH-------HHHHHHHcCCCEE--EEcCCCCCCccccCCCc
Confidence 4456778889999999998754433222 12 2223456676665 454434333211 11
Q ss_pred -------HHHHHHHHHHHHhCCCC--EEEEcCCCCCC-CHHHHHHHHHHHH
Q 014369 276 -------PSKVAYVAKELHDMGCF--EISLGDTIGVG-TPGTVVPMLEAVM 316 (426)
Q Consensus 276 -------~~~l~~~~~~l~~~Gad--~I~l~DT~G~~-~P~~v~~li~~l~ 316 (426)
..++.+.++.+.++|++ .|.+==-.|.. ++++-.++++.+.
T Consensus 155 ~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~k~~~~n~~ll~~l~ 205 (282)
T PRK11613 155 DDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFGKNLSHNYQLLARLA 205 (282)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcCCCHHHHHHHHHHHH
Confidence 14666777888899985 55443334543 3455566666554
No 157
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=96.07 E-value=0.26 Score=48.54 Aligned_cols=176 Identities=19% Similarity=0.201 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEE-------EeC--C----hhhHHHHH
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV-------LTP--N----LKGFEAAI 211 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~-------l~~--~----~~di~~a~ 211 (426)
.+.++..++++...+.|++.|-+... +++. ..+.+. .++.+.+ +.+ . ...++.|+
T Consensus 36 ~~~~d~~~~~~~a~~~~~~av~v~~~----~~~~------~~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~ 103 (267)
T PRK07226 36 DGLVDIRDTVNKVAEGGADAVLMHKG----LARH------GHRGYG--RDVGLIVHLSASTSLSPDPNDKVLVGTVEEAI 103 (267)
T ss_pred cCcCCHHHHHHHHHhcCCCEEEeCHh----HHhh------hccccC--CCCcEEEEEcCCCCCCCCCCcceeeecHHHHH
Confidence 36667778899999999988877521 1110 001110 1221111 111 1 23588999
Q ss_pred HcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 014369 212 AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291 (426)
Q Consensus 212 ~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Ga 291 (426)
+.|++.|.+.+..... ..++.++.+.++++.+++.|+.+.+. .+..|....+..+++.+...++.+.++|+
T Consensus 104 ~~Gad~v~~~~~~g~~--------~~~~~~~~~~~v~~~~~~~g~pl~vi-~~~~g~~~e~~~~~~~i~~a~~~a~e~GA 174 (267)
T PRK07226 104 KLGADAVSVHVNVGSE--------TEAEMLEDLGEVAEECEEWGMPLLAM-MYPRGPGIKNEYDPEVVAHAARVAAELGA 174 (267)
T ss_pred HcCCCEEEEEEecCCh--------hHHHHHHHHHHHHHHHHHcCCcEEEE-EecCCCccCCCccHHHHHHHHHHHHHHCC
Confidence 9999987776543321 13467888889999999999987652 22222212233567888888899999999
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEeCC--CcCcHHHHHHHHHHcCCCEE
Q 014369 292 FEISLGDTIGVGTPGTVVPMLEAVMAV--VPVEKLAVHLHD--TYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 292 d~I~l~DT~G~~~P~~v~~li~~l~~~--~p~~~i~~H~HN--d~GlA~ANaLaAl~aGa~~V 350 (426)
|.|-..=+ | .+ ++++.+.+. +|. +..=+-+ |+-.++++.-.++++||+.+
T Consensus 175 D~vKt~~~-~--~~----~~l~~~~~~~~ipV--~a~GGi~~~~~~~~l~~v~~~~~aGA~Gi 228 (267)
T PRK07226 175 DIVKTNYT-G--DP----ESFREVVEGCPVPV--VIAGGPKTDTDREFLEMVRDAMEAGAAGV 228 (267)
T ss_pred CEEeeCCC-C--CH----HHHHHHHHhCCCCE--EEEeCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 99966511 1 22 334444443 453 3333344 77788999999999999955
No 158
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=96.04 E-value=0.59 Score=44.66 Aligned_cols=178 Identities=13% Similarity=0.086 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChH
Q 014369 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEA 227 (426)
Q Consensus 148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~ 227 (426)
++..++++.+.++|.+.|++|--..-. .....++++.+|+..+..+..+--+...+- -++|-+-+..=
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~gvt----~~~~~~~v~~ik~~~~lPvilfp~~~~~i~----~~aD~~~~~sl---- 78 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLGIV----ESNLDQTVKKIKKITNLPVILFPGNVNGLS----RYADAVFFMSL---- 78 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCC----HHHHHHHHHHHHhhcCCCEEEECCCccccC----cCCCEEEEEEe----
Confidence 455668999999999999998422100 011233344455422233332222443322 34665554421
Q ss_pred HHhhhcCC-CHHHHHHHHHHHHHHHHhcCCcE--EEEEEeeecCCC-----C---CCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369 228 FSKSNINC-SIEDSLVRYRAVAHAAKVLSIPV--RGYVSCVVGCPV-----E---GAIPPSKVAYVAKELHDMGCFEISL 296 (426)
Q Consensus 228 ~~~~~~~~-s~~e~l~~~~~~v~~Ak~~G~~v--~~~v~~~fg~pd-----~---~r~~~~~l~~~~~~l~~~Gad~I~l 296 (426)
+|. +.+..+..-.+.+-..|+.|.++ ++|+...-++-. + -+.+++....++..+..+|++.|+|
T Consensus 79 -----lns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~L 153 (205)
T TIGR01769 79 -----LNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYL 153 (205)
T ss_pred -----ecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 111 22333333334444457878754 455543211111 0 1247889999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHH---HHHHHHHHcCCCEE
Q 014369 297 GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL---PNILISLQMGISTV 350 (426)
Q Consensus 297 ~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~---ANaLaAl~aGa~~V 350 (426)
.|..|...|.. .++++.+++... .++.+ |-|+ ..+-.++.+|||.|
T Consensus 154 e~~sGa~~~v~-~e~i~~Vk~~~~-~Pv~v------GGGIrs~e~a~~l~~~GAD~V 202 (205)
T TIGR01769 154 EAGSGASYPVN-PETISLVKKASG-IPLIV------GGGIRSPEIAYEIVLAGADAI 202 (205)
T ss_pred EcCCCCCCCCC-HHHHHHHHHhhC-CCEEE------eCCCCCHHHHHHHHHcCCCEE
Confidence 99988864433 666777777652 23332 3333 34444557888876
No 159
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.02 E-value=0.87 Score=43.29 Aligned_cols=179 Identities=13% Similarity=0.075 Sum_probs=104.8
Q ss_pred CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEE--
Q 014369 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVL-- 200 (426)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l-- 200 (426)
+|+.+.+.-.+. .|.- .-+.++-.++++...+.|...++++. .+.++.++...+..+..+
T Consensus 3 ~~~~~~~~~~~~-~~~~----~~~~~~~~~~a~a~~~~G~~~~~~~~-------------~~~i~~i~~~~~~Pil~~~~ 64 (221)
T PRK01130 3 LKGGLIVSCQAL-PGEP----LHSPEIMAAMALAAVQGGAVGIRANG-------------VEDIKAIRAVVDVPIIGIIK 64 (221)
T ss_pred cCCCEEEEecCC-CCCC----CCCHHHHHHHHHHHHHCCCeEEEcCC-------------HHHHHHHHHhCCCCEEEEEe
Confidence 455565555544 3322 22566779999999999999999752 133445554334443222
Q ss_pred ---------e-CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-cCCcEEEEEEeeecCC
Q 014369 201 ---------T-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCP 269 (426)
Q Consensus 201 ---------~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~-~G~~v~~~v~~~fg~p 269 (426)
. +..+.++.+.++|++.|-+-.+..+. .. -+.+.++++++++ .++.+.+.
T Consensus 65 ~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~---------p~--~~~~~~~i~~~~~~~~i~vi~~-------- 125 (221)
T PRK01130 65 RDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPR---------PD--GETLAELVKRIKEYPGQLLMAD-------- 125 (221)
T ss_pred cCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCC---------CC--CCCHHHHHHHHHhCCCCeEEEe--------
Confidence 1 23457899999999966664432110 00 0224567778888 77765421
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEc--CCCCC--CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH-HHHHHHHHH
Q 014369 270 VEGAIPPSKVAYVAKELHDMGCFEISLG--DTIGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQ 344 (426)
Q Consensus 270 d~~r~~~~~l~~~~~~l~~~Gad~I~l~--DT~G~--~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA-~ANaLaAl~ 344 (426)
. .+++. ++.+.++|+|.|.+. +..+. .....-..+++.+++.+. .++.. ..|.. ..++..+++
T Consensus 126 v---~t~ee----~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~-iPvia----~GGI~t~~~~~~~l~ 193 (221)
T PRK01130 126 C---STLEE----GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG-CPVIA----EGRINTPEQAKKALE 193 (221)
T ss_pred C---CCHHH----HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC-CCEEE----ECCCCCHHHHHHHHH
Confidence 1 23444 356788999988652 11111 111122457777777653 23433 56774 578888899
Q ss_pred cCCCEE
Q 014369 345 MGISTV 350 (426)
Q Consensus 345 aGa~~V 350 (426)
+||+.|
T Consensus 194 ~GadgV 199 (221)
T PRK01130 194 LGAHAV 199 (221)
T ss_pred CCCCEE
Confidence 999876
No 160
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=96.02 E-value=0.36 Score=48.61 Aligned_cols=209 Identities=11% Similarity=0.055 Sum_probs=125.4
Q ss_pred HHHHHhCCCCeEEEe-cCC--CCCcccc--ccCHHHHHHHhHhcCC-CcEEEEeC------C----hhhHHHHHHcCCCE
Q 014369 154 IRRLVSSGLPVVEAT-SFV--SPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTP------N----LKGFEAAIAAGAKE 217 (426)
Q Consensus 154 ~~~L~~~Gv~~IEvG-~~~--s~~~~p~--~~D~~~v~~~i~~~~~-~~l~~l~~------~----~~di~~a~~~Gv~~ 217 (426)
++.+.++|++.+=++ +.. +.-++|. +.+..+++..++++.+ +.+++++- + .+-++...++|+.-
T Consensus 29 Arl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaag 108 (294)
T TIGR02319 29 AKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIVG 108 (294)
T ss_pred HHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeE
Confidence 566688899999874 322 2233443 3456777777776532 34455442 1 13467888999999
Q ss_pred EEEeccCChHHHh---hhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 014369 218 VAIFASASEAFSK---SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI 294 (426)
Q Consensus 218 V~i~~~~Sd~~~~---~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I 294 (426)
|+|-..+.+-+.- .+-=.+.++..++++.+.+..++-.+-+.+-. .++ .....+...+-+++..++|||.|
T Consensus 109 i~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ART-Da~-----~~~g~deaI~Ra~aY~eAGAD~i 182 (294)
T TIGR02319 109 YHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIART-DAR-----ESFGLDEAIRRSREYVAAGADCI 182 (294)
T ss_pred EEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEe-ccc-----ccCCHHHHHHHHHHHHHhCCCEE
Confidence 9999876542111 11113778888888766554444233222111 111 11245677777888889999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHH
Q 014369 295 SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATED 374 (426)
Q Consensus 295 ~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEe 374 (426)
.+. |.-+++++..+.+.+. .|. .+.+-......+= +.-.--++|+++|-.....+ ++-..++.+
T Consensus 183 fi~---~~~~~~ei~~~~~~~~--~P~-~~nv~~~~~~p~~--s~~eL~~lG~~~v~~~~~~~--------~aa~~a~~~ 246 (294)
T TIGR02319 183 FLE---AMLDVEEMKRVRDEID--APL-LANMVEGGKTPWL--TTKELESIGYNLAIYPLSGW--------MAAASVLRK 246 (294)
T ss_pred Eec---CCCCHHHHHHHHHhcC--CCe-eEEEEecCCCCCC--CHHHHHHcCCcEEEEcHHHH--------HHHHHHHHH
Confidence 996 6778888777776652 232 1234433333322 23344466999987766655 456677888
Q ss_pred HHHHHHhCCC
Q 014369 375 VVYMLSGLGV 384 (426)
Q Consensus 375 vv~~L~~lG~ 384 (426)
.+..|+..|.
T Consensus 247 ~~~~l~~~G~ 256 (294)
T TIGR02319 247 LFTELREAGT 256 (294)
T ss_pred HHHHHHHcCC
Confidence 8887776554
No 161
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=96.01 E-value=0.72 Score=45.43 Aligned_cols=187 Identities=18% Similarity=0.181 Sum_probs=105.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCccccccCHHHHHH----HhHhcC---CCcEEEEeCChhhHHHHHHc
Q 014369 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVME----AVRDLE---GARLPVLTPNLKGFEAAIAA 213 (426)
Q Consensus 142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~~~v~~----~i~~~~---~~~l~~l~~~~~di~~a~~~ 213 (426)
+..++.+..++.+..+.+.|.+.|++|.-++ |.. +. -+.++.++ .++.+. +..++.=+.+.+-+++|++.
T Consensus 18 ~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~-~~-i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~~v~e~al~~ 95 (257)
T cd00739 18 GRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGA-DP-VSVEEELERVIPVLEALRGELDVLISVDTFRAEVARAALEA 95 (257)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCC-CC-CCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCHHHHHHHHHh
Confidence 3357889999999999999999999996443 321 11 12222222 233322 34443334677889999999
Q ss_pred CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC-----C-----CHHHHHHHH
Q 014369 214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-----I-----PPSKVAYVA 283 (426)
Q Consensus 214 Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r-----~-----~~~~l~~~~ 283 (426)
|++.|.=.-... . + .++++.++++|..+.+ +..-|.|.... . -..++.+..
T Consensus 96 G~~iINdisg~~---------------~-~-~~~~~l~~~~~~~vV~--m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i 156 (257)
T cd00739 96 GADIINDVSGGS---------------D-D-PAMLEVAAEYGAPLVL--MHMRGTPKTMQENPYYEDVVDEVLSFLEARL 156 (257)
T ss_pred CCCEEEeCCCCC---------------C-C-hHHHHHHHHcCCCEEE--ECCCCCCcccccCCCcccHHHHHHHHHHHHH
Confidence 988665221100 0 0 2445567788877663 43222221100 0 113456667
Q ss_pred HHHHhCCCC--EEEEcCCCCCC-CHHHHHHHHHHHH---Hh-cCCceEEE------------EeCCCcCcHHHHHHHHHH
Q 014369 284 KELHDMGCF--EISLGDTIGVG-TPGTVVPMLEAVM---AV-VPVEKLAV------------HLHDTYGQSLPNILISLQ 344 (426)
Q Consensus 284 ~~l~~~Gad--~I~l~DT~G~~-~P~~v~~li~~l~---~~-~p~~~i~~------------H~HNd~GlA~ANaLaAl~ 344 (426)
+.+.++|++ .|.+==-+|.. ++++-.++++.++ +. +|. -+++ ..++..+--+|-+..|++
T Consensus 157 ~~~~~~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~~i~~l~~~~~pi-l~G~SrkSfig~~~~~~~~~r~~~t~~~~~~~~~ 235 (257)
T cd00739 157 EAAESAGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQLGLPV-LVGASRKSFIGALLGREPKDRDWGTLALSALAAA 235 (257)
T ss_pred HHHHHcCCCHHHEEEecCCCcccCHHHHHHHHHHHHHHHhCCCcE-EEEecccHHHHHhcCCCccccchhHHHHHHHHHH
Confidence 778889975 55553333432 2444455555544 21 342 1332 334555666677777888
Q ss_pred cCCCEE
Q 014369 345 MGISTV 350 (426)
Q Consensus 345 aGa~~V 350 (426)
.||++|
T Consensus 236 ~Ga~ii 241 (257)
T cd00739 236 NGADIV 241 (257)
T ss_pred cCCCEE
Confidence 999877
No 162
>PRK09989 hypothetical protein; Provisional
Probab=96.01 E-value=0.4 Score=46.45 Aligned_cols=186 Identities=10% Similarity=0.023 Sum_probs=100.5
Q ss_pred HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC----------------C-----hh----
Q 014369 151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP----------------N-----LK---- 205 (426)
Q Consensus 151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----------------~-----~~---- 205 (426)
.+.++.+.++|++.||+..+.. .+.+++.+.++. .++++++++. . .+
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~~~~-------~~~~~~~~~l~~-~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 89 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLFPYD-------YSTLQIQKQLEQ-NHLTLALFNTAPGDINAGEWGLSALPGREHEARADIDL 89 (258)
T ss_pred HHHHHHHHHcCCCEEEECCccc-------CCHHHHHHHHHH-cCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHH
Confidence 4577888999999999964321 234566655542 3344443321 0 11
Q ss_pred hHHHHHHcCCCEEEEeccCChHHHhhhcCCC----HHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCS----IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 281 (426)
Q Consensus 206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s----~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~ 281 (426)
-++.|.+.|++.|+++.+..+ -+.+ .+...+.+.++.++|++.|+.+...-......+...-.+.+.+
T Consensus 90 ~i~~A~~lg~~~v~v~~g~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~~~~~~~~~~~~~~-- 161 (258)
T PRK09989 90 ALEYALALNCEQVHVMAGVVP------AGEDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPGVKPHYLFSSQYQA-- 161 (258)
T ss_pred HHHHHHHhCcCEEEECccCCC------CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCccCCHHHH--
Confidence 234556789998887643211 0112 2345677778888999999876521110000010011123333
Q ss_pred HHHHHHhCCCCEE-EEcCCCCCCCHH-HHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369 282 VAKELHDMGCFEI-SLGDTIGVGTPG-TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG 359 (426)
Q Consensus 282 ~~~~l~~~Gad~I-~l~DT~G~~~P~-~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe 359 (426)
.+.+.+.+.+.+ ..-|+.-...++ ++..+++....+ -..+|.++..+ +
T Consensus 162 -~~ll~~v~~~~v~l~lD~~h~~~~~~~~~~~i~~~~~r----i~hvHi~D~~~-------------------------~ 211 (258)
T PRK09989 162 -LAIVEEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGK----YAHVQIAGLPD-------------------------R 211 (258)
T ss_pred -HHHHHHcCCCCeEEEeehHhHHHcCCCHHHHHHHhhhh----EEEEEECCCCC-------------------------C
Confidence 334445554434 566776554442 334444443332 35678875211 1
Q ss_pred CCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369 360 CPYAKGASGNVATEDVVYMLSGLGVE 385 (426)
Q Consensus 360 cP~a~graGNa~lEevv~~L~~lG~~ 385 (426)
+ .+| .|..+...++.+|++.|++
T Consensus 212 ~--~pG-~G~id~~~i~~al~~~Gy~ 234 (258)
T PRK09989 212 H--EPD-DGEINYPWLFRLFDEVGYQ 234 (258)
T ss_pred C--CCC-CCCcCHHHHHHHHHHcCCC
Confidence 1 123 5889999999999998876
No 163
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=95.98 E-value=0.23 Score=49.76 Aligned_cols=208 Identities=16% Similarity=0.083 Sum_probs=122.5
Q ss_pred HHHHHhCCCCeEEEecCC--CCCcccc--ccCHHHHHHHhHhcCC-CcEEEEeC------Ch----hhHHHHHHcCCCEE
Q 014369 154 IRRLVSSGLPVVEATSFV--SPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTP------NL----KGFEAAIAAGAKEV 218 (426)
Q Consensus 154 ~~~L~~~Gv~~IEvG~~~--s~~~~p~--~~D~~~v~~~i~~~~~-~~l~~l~~------~~----~di~~a~~~Gv~~V 218 (426)
++...++|++.|=+++.. ..-+.|. +-+..++++.++++.. +.+++++- +. +-++...++|+.-|
T Consensus 26 Ari~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi 105 (285)
T TIGR02317 26 ALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAGAAAV 105 (285)
T ss_pred HHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 455677899999887542 1223443 3466778887776532 34444442 22 34778889999999
Q ss_pred EEeccCChHHHhhhcC---CCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC-CCCCHHHHHHHHHHHHhCCCCEE
Q 014369 219 AIFASASEAFSKSNIN---CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-GAIPPSKVAYVAKELHDMGCFEI 294 (426)
Q Consensus 219 ~i~~~~Sd~~~~~~~~---~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~-~r~~~~~l~~~~~~l~~~Gad~I 294 (426)
+|-..+.+-..-+.-+ .+.++..++++.+.+..++-.+-+. ..+ |+ .....+...+-+++..++|||.|
T Consensus 106 ~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~Ii---ART----Da~~~~g~deAI~Ra~ay~~AGAD~v 178 (285)
T TIGR02317 106 HIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVII---ART----DARAVEGLDAAIERAKAYVEAGADMI 178 (285)
T ss_pred EEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEE---EEc----CcccccCHHHHHHHHHHHHHcCCCEE
Confidence 9998765422111111 3678888887655544432222111 111 11 12246677777888889999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHH
Q 014369 295 SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATED 374 (426)
Q Consensus 295 ~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEe 374 (426)
.+. |.-+++++.++.+.+. .|. .+.+-..+..++= +.-.--++|+++|-.....+ ++-+.++++
T Consensus 179 fi~---g~~~~e~i~~~~~~i~--~Pl-~~n~~~~~~~p~~--s~~eL~~lGv~~v~~~~~~~--------~aa~~a~~~ 242 (285)
T TIGR02317 179 FPE---ALTSLEEFRQFAKAVK--VPL-LANMTEFGKTPLF--TADELREAGYKMVIYPVTAF--------RAMNKAAEA 242 (285)
T ss_pred EeC---CCCCHHHHHHHHHhcC--CCE-EEEeccCCCCCCC--CHHHHHHcCCcEEEEchHHH--------HHHHHHHHH
Confidence 995 5667777776666542 232 1133322221211 23344577999997766655 466777888
Q ss_pred HHHHHHhCCC
Q 014369 375 VVYMLSGLGV 384 (426)
Q Consensus 375 vv~~L~~lG~ 384 (426)
.+..|+..|.
T Consensus 243 ~~~~l~~~g~ 252 (285)
T TIGR02317 243 VYNEIKEHGT 252 (285)
T ss_pred HHHHHHHcCC
Confidence 8888876554
No 164
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=95.94 E-value=0.61 Score=44.98 Aligned_cols=168 Identities=19% Similarity=0.196 Sum_probs=112.1
Q ss_pred HHHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhcCCCcEE--EEeCC-hhhHHHHHHcCCCEEEEecc
Q 014369 151 VELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARLP--VLTPN-LKGFEAAIAAGAKEVAIFAS 223 (426)
Q Consensus 151 i~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~--~l~~~-~~di~~a~~~Gv~~V~i~~~ 223 (426)
-+-++.+.++|++.|=+ |.| +|+++=...+++.+++.....+- .++.+ .+-++..+++|++.|-+..-
T Consensus 19 ~~el~~~~~agad~iH~DVMDghF-----VPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E 93 (220)
T COG0036 19 GEELKALEAAGADLIHIDVMDGHF-----VPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAE 93 (220)
T ss_pred HHHHHHHHHcCCCEEEEeccCCCc-----CCCcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEec
Confidence 45677788999997655 444 45555456778888875444443 34544 56788899999998888653
Q ss_pred CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----cCC
Q 014369 224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----GDT 299 (426)
Q Consensus 224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----~DT 299 (426)
+-..+.++++++|++|.++.+.+. | .++.+.+..+... +|.|-+ +.-
T Consensus 94 ----------------~~~~~~r~i~~Ik~~G~kaGv~ln-----P---~Tp~~~i~~~l~~-----vD~VllMsVnPGf 144 (220)
T COG0036 94 ----------------ATEHIHRTIQLIKELGVKAGLVLN-----P---ATPLEALEPVLDD-----VDLVLLMSVNPGF 144 (220)
T ss_pred ----------------cCcCHHHHHHHHHHcCCeEEEEEC-----C---CCCHHHHHHHHhh-----CCEEEEEeECCCC
Confidence 233456888999999998875442 3 2456666665543 333333 455
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE-eec
Q 014369 300 IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV-DCS 353 (426)
Q Consensus 300 ~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V-D~S 353 (426)
.|...-.++-+-++.+++..+... .+-.-=|=|.-..|+-.+.+|||+.+ -+|
T Consensus 145 gGQ~Fi~~~l~Ki~~lr~~~~~~~-~~~IeVDGGI~~~t~~~~~~AGad~~VaGS 198 (220)
T COG0036 145 GGQKFIPEVLEKIRELRAMIDERL-DILIEVDGGINLETIKQLAAAGADVFVAGS 198 (220)
T ss_pred cccccCHHHHHHHHHHHHHhcccC-CeEEEEeCCcCHHHHHHHHHcCCCEEEEEE
Confidence 666666777777888888776311 22333367899999999999999965 444
No 165
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=95.91 E-value=1 Score=48.58 Aligned_cols=174 Identities=18% Similarity=0.127 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc---CCCcEEEEeCChhhHHHHHHcCCCEEEEeccC
Q 014369 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKGFEAAIAAGAKEVAIFASA 224 (426)
Q Consensus 148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~ 224 (426)
+..++-+..+.+.|.+.|++|..+... +.+.+...++.+ .+..++.=+.+.+-+++|+++|++.|. ++
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p------~~~~v~~~V~~l~~~~~~pISIDT~~~~v~eaAL~aGAdiIN---sV 235 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDD------DPDVVKEKVKTALDALDSPVIADTPTLDELYEALKAGASGVI---MP 235 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCC------cHHHHHHHHHHHHhhCCCcEEEeCCCHHHHHHHHHcCCCEEE---EC
Confidence 667888999999999999999765421 233455555433 245555546788899999999999766 33
Q ss_pred ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 014369 225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT 304 (426)
Q Consensus 225 Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~ 304 (426)
|. ..+ .++...+++.|..+. ++. .......+++.+.++.+.++|.+.|.+==-.|. .
T Consensus 236 s~------------~~~---d~~~~l~a~~g~~vV--lm~-----~~~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~-~ 292 (499)
T TIGR00284 236 DV------------ENA---VELASEKKLPEDAFV--VVP-----GNQPTNYEELAKAVKKLRTSGYSKVAADPSLSP-P 292 (499)
T ss_pred Cc------------cch---hHHHHHHHHcCCeEE--EEc-----CCCCchHHHHHHHHHHHHHCCCCcEEEeCCCCc-c
Confidence 32 112 245556677777664 232 111223478888999999999976444323332 3
Q ss_pred HHHHHHHHHHHH---HhcCCceE--EEE-e-----CCCcCcHHHHHHHHHHcCCCEEeecc
Q 014369 305 PGTVVPMLEAVM---AVVPVEKL--AVH-L-----HDTYGQSLPNILISLQMGISTVDCSV 354 (426)
Q Consensus 305 P~~v~~li~~l~---~~~p~~~i--~~H-~-----HNd~GlA~ANaLaAl~aGa~~VD~Sv 354 (426)
+..+.+-+..++ +.++. ++ ++= . =+..|.-.+-+..|++.||++|=++=
T Consensus 293 ~~~l~~sL~~l~~~r~~~~~-Pil~GvSNvtel~daDs~g~naal~~~a~e~Ga~ilrvhd 352 (499)
T TIGR00284 293 LLGLLESIIRFRRASRLLNV-PLVFGAANVTELVDADSHGVNALLAAIALEAGASILYVVE 352 (499)
T ss_pred hHHHHHHHHHHHHHHHhcCC-cEEEeeccccCCCccchhHHHHHHHHHHHHcCCCEEEEcC
Confidence 344555455554 34542 32 320 0 13445555666778899999884443
No 166
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=95.86 E-value=0.97 Score=44.12 Aligned_cols=205 Identities=18% Similarity=0.130 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEE--EeCChhhHHHHHHcCCCEEEEeccCC
Q 014369 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIFASAS 225 (426)
Q Consensus 148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~~di~~a~~~Gv~~V~i~~~~S 225 (426)
.+-+++++.+.+.|++.+=+.-...... ......++.+.+.+..+.++.+ -+++.++++.++..|++.|.+...+
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~--~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~- 106 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSE--GRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAA- 106 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc--cChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhH-
Confidence 3568899999999999877753221110 0011233444444333444443 3478999999999999998765321
Q ss_pred hHHHhhhcCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEEeeecCCC------------CCCCCHHHHHHHHHHHHhCCCC
Q 014369 226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLS-IPVRGYVSCVVGCPV------------EGAIPPSKVAYVAKELHDMGCF 292 (426)
Q Consensus 226 d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G-~~v~~~v~~~fg~pd------------~~r~~~~~l~~~~~~l~~~Gad 292 (426)
+ +..+.+.++ ++..| -++.+.+-. ...+. ........+.++++.+.++|++
T Consensus 107 --~----------~~p~~~~~~---~~~~~~~~iv~slD~-~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~ 170 (254)
T TIGR00735 107 --V----------KNPELIYEL---ADRFGSQCIVVAIDA-KRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAG 170 (254)
T ss_pred --h----------hChHHHHHH---HHHcCCCCEEEEEEe-ccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCC
Confidence 0 112222232 23334 334433321 10000 0011234567788899999999
Q ss_pred EEEE--cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CCEE-eecccCCCCCCCCCCCCC
Q 014369 293 EISL--GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTV-DCSVAGLGGCPYAKGASG 368 (426)
Q Consensus 293 ~I~l--~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~~V-D~Sv~GlGecP~a~graG 368 (426)
.|.+ -|..|.+...+ .++++.+++..+. ++-..+=-. ...-+..++..| |+.| -++.. -.|
T Consensus 171 ~iivt~i~~~g~~~g~~-~~~~~~i~~~~~i-pvia~GGi~---s~~di~~~~~~g~~dgv~~g~a~----------~~~ 235 (254)
T TIGR00735 171 EILLTSMDKDGTKSGYD-LELTKAVSEAVKI-PVIASGGAG---KPEHFYEAFTKGKADAALAASVF----------HYR 235 (254)
T ss_pred EEEEeCcCcccCCCCCC-HHHHHHHHHhCCC-CEEEeCCCC---CHHHHHHHHHcCCcceeeEhHHH----------hCC
Confidence 9999 55555543333 4567788777653 455543111 122334555656 7764 22222 235
Q ss_pred cccHHHHHHHHHhCCCCC
Q 014369 369 NVATEDVVYMLSGLGVET 386 (426)
Q Consensus 369 Na~lEevv~~L~~lG~~~ 386 (426)
..+++++...|+..|+..
T Consensus 236 ~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 236 EITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCCHHHHHHHHHHCCCcc
Confidence 678999998998887753
No 167
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=95.86 E-value=0.36 Score=48.81 Aligned_cols=126 Identities=17% Similarity=0.210 Sum_probs=75.8
Q ss_pred ecCCCCCccccccCHHHHHHHhHhcCCC-cEEEEeC----ChhhHHHHHHcCCC-EEEEec-cCChHHHhhhcCCCHHHH
Q 014369 168 TSFVSPKWVPQLADARDVMEAVRDLEGA-RLPVLTP----NLKGFEAAIAAGAK-EVAIFA-SASEAFSKSNINCSIEDS 240 (426)
Q Consensus 168 G~~~s~~~~p~~~D~~~v~~~i~~~~~~-~l~~l~~----~~~di~~a~~~Gv~-~V~i~~-~~Sd~~~~~~~~~s~~e~ 240 (426)
|+|..+..+|. ....++++.++..+.. ++.+-++ +.+.++.+.++|+. .|.+.+ +.++.-++..+|+.. .
T Consensus 77 gsf~D~~~~~~-~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~--t 153 (313)
T TIGR01210 77 GSFLDDREVPK-ETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGS--T 153 (313)
T ss_pred CCcCCcCcCCH-HHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCC--C
Confidence 34555443431 1123444445443322 3444343 24567778889998 688876 556655543455432 2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC-CCHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369 241 LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAKELHDMGCFEISLGDT 299 (426)
Q Consensus 241 l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r-~~~~~l~~~~~~l~~~Gad~I~l~DT 299 (426)
.+.+.++++.++++|+.+.++++ +|.|..+. -+.+.+.+.++.+.+++ +.|.+--+
T Consensus 154 ~~~~~~ai~~~~~~Gi~v~~~~i--~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l 210 (313)
T TIGR01210 154 FEDFIRAAELARKYGAGVKAYLL--FKPPFLSEKEAIADMISSIRKCIPVT-DTVSINPT 210 (313)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEE--ecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEECC
Confidence 44566888899999999988887 67775432 24566667788888888 77775433
No 168
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=95.76 E-value=0.5 Score=47.51 Aligned_cols=208 Identities=17% Similarity=0.124 Sum_probs=122.8
Q ss_pred HHHHHhCCCCeEEEecC--C-CCCcccc--ccCHHHHHHHhHhcCC-CcEEEEeC------Ch----hhHHHHHHcCCCE
Q 014369 154 IRRLVSSGLPVVEATSF--V-SPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTP------NL----KGFEAAIAAGAKE 217 (426)
Q Consensus 154 ~~~L~~~Gv~~IEvG~~--~-s~~~~p~--~~D~~~v~~~i~~~~~-~~l~~l~~------~~----~di~~a~~~Gv~~ 217 (426)
++...++|++.|=++++ + +.-+.|. +-+..++++.++++.+ +.+++++- +. +-++...++|+.-
T Consensus 30 Ari~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaag 109 (292)
T PRK11320 30 ALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAA 109 (292)
T ss_pred HHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 45667889999988653 2 2234454 3466778888876543 34455442 22 3477888999999
Q ss_pred EEEeccCChHHHhhhcC---CCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC-CCCCHHHHHHHHHHHHhCCCCE
Q 014369 218 VAIFASASEAFSKSNIN---CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-GAIPPSKVAYVAKELHDMGCFE 293 (426)
Q Consensus 218 V~i~~~~Sd~~~~~~~~---~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~-~r~~~~~l~~~~~~l~~~Gad~ 293 (426)
|+|-..+.+-+.-+.-+ .+.++..++++.+++..+.-.+-+. ..+ |+ .....++..+-+++..++|||.
T Consensus 110 i~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~Ii---ART----Da~~~~g~deAI~Ra~aY~eAGAD~ 182 (292)
T PRK11320 110 VHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIM---ART----DALAVEGLDAAIERAQAYVEAGADM 182 (292)
T ss_pred EEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEE---Eec----CcccccCHHHHHHHHHHHHHcCCCE
Confidence 99988765422211112 3778888888766554442222221 111 11 1224667777788889999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHH
Q 014369 294 ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATE 373 (426)
Q Consensus 294 I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lE 373 (426)
|.+. |.-++++++++.+.+. .|. .+.+-.....++= +.-.--++|+++|-.....+ ++-..+++
T Consensus 183 ifi~---~~~~~~~i~~~~~~~~--~Pl-~~n~~~~~~~p~~--s~~~L~~lGv~~v~~~~~~~--------~aa~~a~~ 246 (292)
T PRK11320 183 IFPE---AMTELEMYRRFADAVK--VPI-LANITEFGATPLF--TTEELASAGVAMVLYPLSAF--------RAMNKAAE 246 (292)
T ss_pred EEec---CCCCHHHHHHHHHhcC--CCE-EEEeccCCCCCCC--CHHHHHHcCCcEEEEChHHH--------HHHHHHHH
Confidence 9996 5667888888777652 342 1122221211111 12233467999986665544 45566777
Q ss_pred HHHHHHHhCCC
Q 014369 374 DVVYMLSGLGV 384 (426)
Q Consensus 374 evv~~L~~lG~ 384 (426)
+++..++..|.
T Consensus 247 ~~~~~l~~~g~ 257 (292)
T PRK11320 247 NVYEAIRRDGT 257 (292)
T ss_pred HHHHHHHHcCC
Confidence 77777776554
No 169
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=95.76 E-value=0.87 Score=45.90 Aligned_cols=137 Identities=21% Similarity=0.212 Sum_probs=87.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc-cCHHHHHHHhHhcCC-CcEEEEeCC---hhhHHHHHHcCCCE
Q 014369 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEG-ARLPVLTPN---LKGFEAAIAAGAKE 217 (426)
Q Consensus 143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~~~-~~l~~l~~~---~~di~~a~~~Gv~~ 217 (426)
..++.++..++++.+.+.|+..|.++. .. |-+ .|..++++.++..++ ..+.+.+.. .+.++...++|++.
T Consensus 47 ~~ls~eei~~~i~~~~~~gi~~I~~tG-GE----Pll~~~l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~~ 121 (331)
T PRK00164 47 ELLSLEEIERLVRAFVALGVRKVRLTG-GE----PLLRKDLEDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLDR 121 (331)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEC-CC----CcCccCHHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCCE
Confidence 358999999999999999999988853 22 322 345566666665433 333333332 24466677899999
Q ss_pred EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369 218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF 292 (426)
Q Consensus 218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad 292 (426)
|.|.+..-+.-....++ ....++++.+.++.+++.|+ .+.++.... + ..+.+.+.++++.+.+.|++
T Consensus 122 i~ISlds~~~e~~~~i~--~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~---~---g~n~~ei~~l~~~~~~~gv~ 189 (331)
T PRK00164 122 VNVSLDSLDPERFKAIT--GRDRLDQVLAGIDAALAAGLTPVKVNAVLM---K---GVNDDEIPDLLEWAKDRGIQ 189 (331)
T ss_pred EEEEeccCCHHHhccCC--CCCCHHHHHHHHHHHHHCCCCcEEEEEEEE---C---CCCHHHHHHHHHHHHhCCCe
Confidence 98887442221112222 22457778888889999998 666543221 1 12447888888888899986
No 170
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=95.75 E-value=0.42 Score=46.05 Aligned_cols=180 Identities=19% Similarity=0.259 Sum_probs=115.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEecc
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFAS 223 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~ 223 (426)
.|..+....++++-...|.++|++- +|+ ++.+.++...+..+++=.-..+.+-.+.++|++.|.|.-.
T Consensus 23 NFd~~~V~~i~~AA~~ggAt~vDIA-----------adp-~LV~~~~~~s~lPICVSaVep~~f~~aV~AGAdliEIGNf 90 (242)
T PF04481_consen 23 NFDAESVAAIVKAAEIGGATFVDIA-----------ADP-ELVKLAKSLSNLPICVSAVEPELFVAAVKAGADLIEIGNF 90 (242)
T ss_pred ccCHHHHHHHHHHHHccCCceEEec-----------CCH-HHHHHHHHhCCCCeEeecCCHHHHHHHHHhCCCEEEecch
Confidence 4899999999999999999999996 354 5667778777777766666677888899999998888633
Q ss_pred CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 014369 224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG 303 (426)
Q Consensus 224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~ 303 (426)
|.|-......+.+|.|+ +.+..|++=-.+...++ + |. -.+.+.=.+++..|.++|+|.|.= -|..
T Consensus 91 --DsFY~qGr~f~a~eVL~----Lt~~tR~LLP~~~LsVT--V--PH--iL~ld~Qv~LA~~L~~~GaDiIQT---EGgt 155 (242)
T PF04481_consen 91 --DSFYAQGRRFSAEEVLA----LTRETRSLLPDITLSVT--V--PH--ILPLDQQVQLAEDLVKAGADIIQT---EGGT 155 (242)
T ss_pred --HHHHhcCCeecHHHHHH----HHHHHHHhCCCCceEEe--c--Cc--cccHHHHHHHHHHHHHhCCcEEEc---CCCC
Confidence 44544444456666664 45556665433332222 1 32 356778888999999999999863 3322
Q ss_pred C--H--HHHHHHHHH----HHHhcCC-ceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 304 T--P--GTVVPMLEA----VMAVVPV-EKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 304 ~--P--~~v~~li~~----l~~~~p~-~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
+ | ..+-.+|+. |...+-. ..+.+-.-.--|+.--.+=.|+.+||..|
T Consensus 156 ss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT~PmAiaaGAsGV 211 (242)
T PF04481_consen 156 SSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVTAPMAIAAGASGV 211 (242)
T ss_pred CCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhhHHHHHHcCCccc
Confidence 2 2 112222221 1111100 00111122456888888889999999865
No 171
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.71 E-value=2.5 Score=41.97 Aligned_cols=180 Identities=11% Similarity=0.094 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEecCC---CCCccccccCHHHHHHHhHh---cCCCcEEEEeCChhhHHHHHHcCCCEEE
Q 014369 146 PTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRD---LEGARLPVLTPNLKGFEAAIAAGAKEVA 219 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~~~~~di~~a~~~Gv~~V~ 219 (426)
+.++.+++|+.|.++|+..+=.+++- +|.....+ .++-++.+++ -.++.+..=..+...++.+.+. ++.+.
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~--g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~k 115 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGL--GEEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY-ADMLQ 115 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCc--HHHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh-CCEEE
Confidence 78889999999999999999888652 22111111 1222333332 2334433333466778888777 88888
Q ss_pred EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299 (426)
Q Consensus 220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT 299 (426)
|...... - .++++++-..|.+|. ++. ....+++++...++.+...|-..+.|+..
T Consensus 116 Iga~~~~----------n-------~~LL~~~a~~gkPV~--lk~------G~~~s~~e~~~A~e~i~~~Gn~~i~L~~r 170 (266)
T PRK13398 116 IGSRNMQ----------N-------FELLKEVGKTKKPIL--LKR------GMSATLEEWLYAAEYIMSEGNENVVLCER 170 (266)
T ss_pred ECccccc----------C-------HHHHHHHhcCCCcEE--EeC------CCCCCHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 8643211 0 144555667788876 331 11237888999999999999887777774
Q ss_pred CC---CCCHHHHHH--HHHHHHHhcCCceEEE-EeCCC--cCcHHHHHHHHHHcCCC--EEeecc
Q 014369 300 IG---VGTPGTVVP--MLEAVMAVVPVEKLAV-HLHDT--YGQSLPNILISLQMGIS--TVDCSV 354 (426)
Q Consensus 300 ~G---~~~P~~v~~--li~~l~~~~p~~~i~~-H~HNd--~GlA~ANaLaAl~aGa~--~VD~Sv 354 (426)
-+ ...|....+ .+..+++.++ .+|.+ =.|-. .-+..+-+++|+.+||+ .|+.-+
T Consensus 171 G~~t~~~Y~~~~vdl~~i~~lk~~~~-~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 171 GIRTFETYTRNTLDLAAVAVIKELSH-LPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccC-CCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccC
Confidence 11 123333322 3555555554 46777 44543 23457889999999999 665443
No 172
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=95.70 E-value=0.39 Score=46.44 Aligned_cols=166 Identities=17% Similarity=0.125 Sum_probs=104.1
Q ss_pred HHHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhc-CCCcEEE--EeCC-hhhHHHHHHcCCCEEEEec
Q 014369 151 VELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDL-EGARLPV--LTPN-LKGFEAAIAAGAKEVAIFA 222 (426)
Q Consensus 151 i~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~--l~~~-~~di~~a~~~Gv~~V~i~~ 222 (426)
.+-++.|.+.|++.+=+ |.|+ |+++=..++++.+++. ++..+-+ ++.+ ..-++..+++|++.|.+..
T Consensus 19 ~~~i~~l~~~g~d~lHiDimDG~FV-----PN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~ 93 (223)
T PRK08745 19 GEEVDNVLKAGADWVHFDVMDNHYV-----PNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHP 93 (223)
T ss_pred HHHHHHHHHcCCCEEEEecccCccC-----CCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcc
Confidence 34567788899997655 5554 4443334567777765 4555444 4545 4568888999999888764
Q ss_pred cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----cC
Q 014369 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----GD 298 (426)
Q Consensus 223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----~D 298 (426)
-. .....++++++|++|+++...+. |. ++.+.+.++... +|.|-+ +.
T Consensus 94 Ea----------------~~~~~~~l~~Ir~~g~k~Glaln-----P~---T~~~~i~~~l~~-----vD~VlvMtV~PG 144 (223)
T PRK08745 94 EA----------------SRHVHRTIQLIKSHGCQAGLVLN-----PA---TPVDILDWVLPE-----LDLVLVMSVNPG 144 (223)
T ss_pred cC----------------cccHHHHHHHHHHCCCceeEEeC-----CC---CCHHHHHHHHhh-----cCEEEEEEECCC
Confidence 32 22355778899999998875443 32 466777666542 232222 34
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 299 TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 299 T~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
-.|.-.-..+.+-|+.+++..+...+.+..==|=|....|+-...++||+.+
T Consensus 145 f~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~ 196 (223)
T PRK08745 145 FGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTF 196 (223)
T ss_pred CCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEE
Confidence 4455554555566666666543211223333466888899999999999866
No 173
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=95.70 E-value=2.2 Score=41.22 Aligned_cols=179 Identities=18% Similarity=0.167 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--C---C-----hhhHHHHHHc
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P---N-----LKGFEAAIAA 213 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---~-----~~di~~a~~~ 213 (426)
..+.++..++++...+.|+..+-+- |.|+| ...+.++. .++++.+.+ | + ....+.|++.
T Consensus 18 ~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~------~a~~~l~~-~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~ 86 (221)
T PRK00507 18 EATEEDIDKLCDEAKEYGFASVCVN----PSYVK------LAAELLKG-SDVKVCTVIGFPLGANTTAVKAFEAKDAIAN 86 (221)
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEEC----HHHHH------HHHHHhCC-CCCeEEEEecccCCCChHHHHHHHHHHHHHc
Confidence 5688888889999888888776653 22221 22222221 346666554 3 2 2367888999
Q ss_pred CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 014369 214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE 293 (426)
Q Consensus 214 Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~ 293 (426)
|+++|.+.+..+-... -..++..+.+..+.+.+ .+..+-+-+. ....+.+.+..+++.+.++|+|.
T Consensus 87 GA~EiD~Vin~~~~~~-----g~~~~v~~ei~~v~~~~--~~~~lKvIlE-------t~~L~~e~i~~a~~~~~~agadf 152 (221)
T PRK00507 87 GADEIDMVINIGALKS-----GDWDAVEADIRAVVEAA--GGAVLKVIIE-------TCLLTDEEKVKACEIAKEAGADF 152 (221)
T ss_pred CCceEeeeccHHHhcC-----CCHHHHHHHHHHHHHhc--CCceEEEEee-------cCcCCHHHHHHHHHHHHHhCCCE
Confidence 9999999877654311 13455566565555544 3444442222 23456788899999999999995
Q ss_pred EEEcCCC--CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369 294 ISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 353 (426)
Q Consensus 294 I~l~DT~--G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S 353 (426)
|--.-+. |..+|+.++.+.+.+...++ +..=--- .-...++.=+++||++|-+|
T Consensus 153 IKTsTG~~~~gat~~~v~~m~~~~~~~~~-----IKasGGI-rt~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 153 VKTSTGFSTGGATVEDVKLMRETVGPRVG-----VKASGGI-RTLEDALAMIEAGATRLGTS 208 (221)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHhCCCce-----EEeeCCc-CCHHHHHHHHHcCcceEccC
Confidence 5555543 34677777776666543333 2221111 11466777789999988554
No 174
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=95.70 E-value=0.17 Score=48.81 Aligned_cols=185 Identities=21% Similarity=0.240 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--C--------C-----hhhHHHHHHc
Q 014369 149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P--------N-----LKGFEAAIAA 213 (426)
Q Consensus 149 ~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~--------~-----~~di~~a~~~ 213 (426)
+..++++...+.|++.|-+... + .....+.+.. .+.++.+++ | . ...++.|++.
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~----~------~~~~~~~~~~-~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~ 88 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPG----Y------VKPAAELLAG-SGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRL 88 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGG----G------HHHHHHHSTT-STSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHT
T ss_pred hHHHHHHHHHHhCCCEEEECHH----H------HHHHHHHhhc-cccccceEEEeCCCCCccccccccchHHHHHHHHHc
Confidence 6677888888889998887531 1 1112222221 123555544 2 1 2457889999
Q ss_pred CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 014369 214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE 293 (426)
Q Consensus 214 Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~ 293 (426)
|++.|.+.+........ ..++.++.+.++++.|++.|+++.+- ...-+.+.....+++.+...++.+.++|+|.
T Consensus 89 GAd~vd~vi~~~~~~~~-----~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~ 162 (236)
T PF01791_consen 89 GADEVDVVINYGALGSG-----NEDEVIEEIAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLIARAARIAAELGADF 162 (236)
T ss_dssp T-SEEEEEEEHHHHHTT-----HHHHHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHHHHHHHHHHHTT-SE
T ss_pred CCceeeeeccccccccc-----cHHHHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHHHHHHHHHHHhCCCE
Confidence 99999988765332111 24678899999999999999988644 3222222122335678999999999999998
Q ss_pred EEEcCC-CCCCCHHHHHHHHHHHHHh-cCCceEEEEe-----CCCcCcHHHHHHHHHHcCCCEEe
Q 014369 294 ISLGDT-IGVGTPGTVVPMLEAVMAV-VPVEKLAVHL-----HDTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 294 I~l~DT-~G~~~P~~v~~li~~l~~~-~p~~~i~~H~-----HNd~GlA~ANaLaAl~aGa~~VD 351 (426)
|-..=+ ....++.++..+-+.+... .|. ++++.. +.++=-.+.-++..+++||+++=
T Consensus 163 vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~-~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G 226 (236)
T PF01791_consen 163 VKTSTGKPVGATPEDVELMRKAVEAAPVPG-KVGVKASGGIDAEDFLRTLEDALEFIEAGADRIG 226 (236)
T ss_dssp EEEE-SSSSCSHHHHHHHHHHHHHTHSSTT-TSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEE
T ss_pred EEecCCccccccHHHHHHHHHHHHhcCCCc-ceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHH
Confidence 776555 2445556666655555432 231 122221 22222345667778899998653
No 175
>TIGR03586 PseI pseudaminic acid synthase.
Probab=95.67 E-value=1.1 Score=45.88 Aligned_cols=176 Identities=10% Similarity=0.115 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEecCCC-----CCccc-------cc--cCHHHHHHHh-----------H--hcCCCcEE
Q 014369 146 PTGVKVELIRRLVSSGLPVVEATSFVS-----PKWVP-------QL--ADARDVMEAV-----------R--DLEGARLP 198 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s-----~~~~p-------~~--~D~~~v~~~i-----------~--~~~~~~l~ 198 (426)
+.+..+++++...++|.+.|=+..+.. +..-+ .. ....++++.+ . +-.++.+.
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~ 94 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIF 94 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEE
Confidence 677888899999999999877754321 10000 00 0111111111 1 11233333
Q ss_pred EEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH
Q 014369 199 VLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK 278 (426)
Q Consensus 199 ~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~ 278 (426)
+-.-..+.++.+.+.|++.+-|.-. +. .+ ..+++++-+.|.+|. ++ .+..+.++
T Consensus 95 stpfd~~svd~l~~~~v~~~KI~S~--~~--------------~n-~~LL~~va~~gkPvi--ls-------tG~~t~~E 148 (327)
T TIGR03586 95 SSPFDETAVDFLESLDVPAYKIASF--EI--------------TD-LPLIRYVAKTGKPII--MS-------TGIATLEE 148 (327)
T ss_pred EccCCHHHHHHHHHcCCCEEEECCc--cc--------------cC-HHHHHHHHhcCCcEE--EE-------CCCCCHHH
Confidence 3334677888888888888777522 11 11 144555566788876 33 23468899
Q ss_pred HHHHHHHHHhCCCCEEEE--cCCCCCCCHHHHHHH--HHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369 279 VAYVAKELHDMGCFEISL--GDTIGVGTPGTVVPM--LEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 352 (426)
Q Consensus 279 l~~~~~~l~~~Gad~I~l--~DT~G~~~P~~v~~l--i~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~ 352 (426)
+...++.+.+.|...|.| | +.++-+|....+| |..+++.++ .+|++=-|- .|...+++|+.+||++|+.
T Consensus 149 i~~Av~~i~~~g~~~i~LlhC-~s~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt---~G~~~~~aAva~GA~iIEk 221 (327)
T TIGR03586 149 IQEAVEACREAGCKDLVLLKC-TSSYPAPLEDANLRTIPDLAERFN-VPVGLSDHT---LGILAPVAAVALGACVIEK 221 (327)
T ss_pred HHHHHHHHHHCCCCcEEEEec-CCCCCCCcccCCHHHHHHHHHHhC-CCEEeeCCC---CchHHHHHHHHcCCCEEEe
Confidence 999999999999876666 6 6666666655443 778888885 478884443 4468889999999998854
No 176
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=95.63 E-value=0.6 Score=45.31 Aligned_cols=166 Identities=14% Similarity=0.043 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCC-hhhHHHHHHcCCCEEEEecc
Q 014369 149 VKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPN-LKGFEAAIAAGAKEVAIFAS 223 (426)
Q Consensus 149 ~ki~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~-~~di~~a~~~Gv~~V~i~~~ 223 (426)
.-.+-++.|.++|++.+=+ |.|+ |+++=...+++.++......+-.++.+ .+-++..+++|++.|-+.+-
T Consensus 26 ~l~~el~~l~~~g~d~lHiDVMDG~FV-----PNitfGp~~i~~i~~~~~~DvHLMv~~P~~~i~~~~~aGad~It~H~E 100 (228)
T PRK08091 26 KFNETLTTLSENQLRLLHFDIADGQFS-----PFFTVGAIAIKQFPTHCFKDVHLMVRDQFEVAKACVAAGADIVTLQVE 100 (228)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCCcC-----CccccCHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEccc
Confidence 3345678888999997655 5554 444333445555653111233445555 45788999999998877542
Q ss_pred CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----cCC
Q 014369 224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----GDT 299 (426)
Q Consensus 224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----~DT 299 (426)
. .....+++++.|++|+.+.+-+.. .|. ++.+.+.++... +|.|-+ +.-
T Consensus 101 a----------------~~~~~~~l~~Ik~~g~~~kaGlal---nP~---Tp~~~i~~~l~~-----vD~VLiMtV~PGf 153 (228)
T PRK08091 101 Q----------------THDLALTIEWLAKQKTTVLIGLCL---CPE---TPISLLEPYLDQ-----IDLIQILTLDPRT 153 (228)
T ss_pred C----------------cccHHHHHHHHHHCCCCceEEEEE---CCC---CCHHHHHHHHhh-----cCEEEEEEECCCC
Confidence 1 233557788899999944433432 232 567777766643 343322 344
Q ss_pred CCCCCHHHHHHHHHHHHHhcC----CceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 300 IGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 300 ~G~~~P~~v~~li~~l~~~~p----~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
.|...-..+.+-|+.+++..+ ...|++ |=|.-..|+-...++|||.+
T Consensus 154 gGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeV----DGGI~~~ti~~l~~aGaD~~ 204 (228)
T PRK08091 154 GTKAPSDLILDRVIQVENRLGNRRVEKLISI----DGSMTLELASYLKQHQIDWV 204 (228)
T ss_pred CCccccHHHHHHHHHHHHHHHhcCCCceEEE----ECCCCHHHHHHHHHCCCCEE
Confidence 455544556666776666543 223444 55777889999999999966
No 177
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=95.58 E-value=0.54 Score=46.01 Aligned_cols=192 Identities=15% Similarity=0.104 Sum_probs=114.4
Q ss_pred cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe----C
Q 014369 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT----P 202 (426)
Q Consensus 127 V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~----~ 202 (426)
+-=+|-|+=.|- ..+.++..++++...+.|++.+-+-. .+++.. .+. ...++.+.+-. +
T Consensus 20 ~~aiDh~~l~gp-----~~~~~~~~~~~~~a~~~~~~~v~~~p----~~~~~~------~~~--~~~~~~~~~~~~~~~~ 82 (258)
T TIGR01949 20 IVPMDHGVSNGP-----IKGLVDIRKTVNEVAEGGADAVLLHK----GIVRRG------HRG--YGKDVGLIIHLSASTS 82 (258)
T ss_pred EEECCCccccCC-----CCCcCCHHHHHHHHHhcCCCEEEeCc----chhhhc------ccc--cCCCCcEEEEEcCCCC
Confidence 344677765552 33666777899999999999887752 111110 000 01223322211 1
Q ss_pred ------C---hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC
Q 014369 203 ------N---LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA 273 (426)
Q Consensus 203 ------~---~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r 273 (426)
. ...++.+++.|++.|.+-....+ .+..+.++.+..+.+.+++.|+.+.+.+. ..|.- .+.
T Consensus 83 ~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~--------~~~~~~~~~~~~i~~~~~~~g~~liv~~~-~~Gvh-~~~ 152 (258)
T TIGR01949 83 LSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGS--------DTEWEQIRDLGMIAEICDDWGVPLLAMMY-PRGPH-IDD 152 (258)
T ss_pred CCCCCCcceeeeeHHHHHHCCCCEEEEEEecCC--------chHHHHHHHHHHHHHHHHHcCCCEEEEEe-ccCcc-ccc
Confidence 1 13478999999998887654221 12346678888999999999988765222 22211 122
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCC--CcCcHHHHHHHHHHcCCCEEe
Q 014369 274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD--TYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HN--d~GlA~ANaLaAl~aGa~~VD 351 (426)
.+++.+.+.++.+.++|+|.|... . ...++. ++.+.+..+..-+..=+-+ |+..++.|+-.++++||+.+-
T Consensus 153 ~~~~~~~~~~~~a~~~GADyikt~-~--~~~~~~----l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia 225 (258)
T TIGR01949 153 RDPELVAHAARLGAELGADIVKTP-Y--TGDIDS----FRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVA 225 (258)
T ss_pred ccHHHHHHHHHHHHHHCCCEEecc-C--CCCHHH----HHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEe
Confidence 456677777788889999999975 2 123333 4444443332112233333 678889999999999999664
Q ss_pred e
Q 014369 352 C 352 (426)
Q Consensus 352 ~ 352 (426)
.
T Consensus 226 ~ 226 (258)
T TIGR01949 226 V 226 (258)
T ss_pred h
Confidence 3
No 178
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=95.58 E-value=0.95 Score=44.70 Aligned_cols=182 Identities=13% Similarity=0.177 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc---CCCcEEEEeCChhhHHHHHHc--CCCEEEE
Q 014369 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKGFEAAIAA--GAKEVAI 220 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~~~~di~~a~~~--Gv~~V~i 220 (426)
+.+..++.+..+.+.|.+.|++|.-+.+. .+.+.+...++.+ .++.++.=+++.+-+++|++. |.+.|.=
T Consensus 23 d~~~i~~~A~~~~~~GAdiIDVg~~~~~~-----eE~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~G~~iINs 97 (261)
T PRK07535 23 DAAFIQKLALKQAEAGADYLDVNAGTAVE-----EEPETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAKGPPLINS 97 (261)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCch-----hHHHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCCCCCEEEe
Confidence 56677888999999999999999754331 1123344444432 355555556777888899988 8775443
Q ss_pred eccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC--EEEEcC
Q 014369 221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF--EISLGD 298 (426)
Q Consensus 221 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad--~I~l~D 298 (426)
+|-. + ++..+++..++++|..+.+-.+..-|-|.......+++.+.++.+.++|++ .|.+==
T Consensus 98 ---Is~~-----------~--~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDP 161 (261)
T PRK07535 98 ---VSAE-----------G--EKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDP 161 (261)
T ss_pred ---CCCC-----------C--ccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeC
Confidence 2210 0 112355667788888776322211122211001135666777888899984 665544
Q ss_pred CCCC--CCHH---HHHHHHHHHHHhcCCceEEEEeCCC-cCcHH------HHHHHHHHcCCC
Q 014369 299 TIGV--GTPG---TVVPMLEAVMAVVPVEKLAVHLHDT-YGQSL------PNILISLQMGIS 348 (426)
Q Consensus 299 T~G~--~~P~---~v~~li~~l~~~~p~~~i~~H~HNd-~GlA~------ANaLaAl~aGa~ 348 (426)
-+|. ..+. ++-+.++.+++.+|+.++.+=.+|- +|++- +-...|+++|.+
T Consensus 162 gi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sfglp~r~~in~~fl~~a~~~Gl~ 223 (261)
T PRK07535 162 LVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNISFGLPNRKLINRAFLVMAMGAGMD 223 (261)
T ss_pred CCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCccCCcchHHHHHHHHHHHHHcCCC
Confidence 4442 1233 3455566777777765666655553 66632 222345666655
No 179
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.57 E-value=1.3 Score=42.39 Aligned_cols=154 Identities=19% Similarity=0.203 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--cccc-----------cCHHHHHHHhHhc-C-CCcEE--EEe-CC---
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKW--VPQL-----------ADARDVMEAVRDL-E-GARLP--VLT-PN--- 203 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--~p~~-----------~D~~~v~~~i~~~-~-~~~l~--~l~-~~--- 203 (426)
-+.++.+.|.+.|++-|.+.||+|.|.+... .|.. ...+.+++.++.. + ++.+. .+. .|
T Consensus 29 P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl 108 (268)
T KOG4175|consen 29 PDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPIILMGYYNPIL 108 (268)
T ss_pred CcHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCcccceeeeecccHHH
Confidence 3567789999999999999999998754211 1211 1234455555532 2 23332 233 23
Q ss_pred ----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHH
Q 014369 204 ----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV 279 (426)
Q Consensus 204 ----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l 279 (426)
.+-++.|..+|+..+.|..- ..| ....+-.+||++|+.... ...+++++.=
T Consensus 109 ~yG~e~~iq~ak~aGanGfiivDl------------PpE----Ea~~~Rne~~k~gislvp---------LvaPsTtdeR 163 (268)
T KOG4175|consen 109 RYGVENYIQVAKNAGANGFIIVDL------------PPE----EAETLRNEARKHGISLVP---------LVAPSTTDER 163 (268)
T ss_pred hhhHHHHHHHHHhcCCCceEeccC------------ChH----HHHHHHHHHHhcCceEEE---------eeCCCChHHH
Confidence 23467788899987666521 123 334566789999987653 1223344443
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCCC-----HHHHHHHHHHHHHhcCCceEEE
Q 014369 280 AYVAKELHDMGCFEISLGDTIGVGT-----PGTVVPMLEAVMAVVPVEKLAV 326 (426)
Q Consensus 280 ~~~~~~l~~~Gad~I~l~DT~G~~~-----P~~v~~li~~l~~~~p~~~i~~ 326 (426)
.++.-.+.+ .-||+.-.+|..- -+.+..|+..+|+...+.|+.+
T Consensus 164 mell~~~ad---sFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAV 212 (268)
T KOG4175|consen 164 MELLVEAAD---SFIYVVSRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAV 212 (268)
T ss_pred HHHHHHhhc---ceEEEEEeccccccHHHHHHHHHHHHHHHHHhcCCCceeE
Confidence 333322222 3556666555532 2556788888888776666665
No 180
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=95.55 E-value=0.83 Score=44.03 Aligned_cols=203 Identities=21% Similarity=0.181 Sum_probs=111.9
Q ss_pred HHHHHHhCCCCeEEEecCCCCCcccc-ccCHHHHHHHhHhcCCCcEEEEeC--------Ch-----------hhHHHHHH
Q 014369 153 LIRRLVSSGLPVVEATSFVSPKWVPQ-LADARDVMEAVRDLEGARLPVLTP--------NL-----------KGFEAAIA 212 (426)
Q Consensus 153 I~~~L~~~Gv~~IEvG~~~s~~~~p~-~~D~~~v~~~i~~~~~~~l~~l~~--------~~-----------~di~~a~~ 212 (426)
+++...++|++.||+.... ..++ ..+.+++.+.++. -++++..+.+ .. +-++.|.+
T Consensus 20 ~l~~~~~~G~~gvEi~~~~---~~~~~~~~~~~l~~~l~~-~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 95 (274)
T COG1082 20 ILRKAAELGFDGVELSPGD---LFPADYKELAELKELLAD-YGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKE 95 (274)
T ss_pred HHHHHHHhCCCeEecCCcc---cCCchhhhHHHHHHHHHH-cCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHH
Confidence 4555677889999997511 1111 1124455554442 3444444321 11 13456777
Q ss_pred cCCCEEEEeccCChHHHhh-hcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 014369 213 AGAKEVAIFASASEAFSKS-NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291 (426)
Q Consensus 213 ~Gv~~V~i~~~~Sd~~~~~-~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Ga 291 (426)
.|++.|.++.+........ ......+...+.+.++.+.|++.|+.+....... +.....++ ....+.+.+.+-
T Consensus 96 lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~l~~e~~~~---~~~~~~~~---~~~~~~~~~~~~ 169 (274)
T COG1082 96 LGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEELGIGLALENHHH---PGNVVETG---ADALDLLREVDS 169 (274)
T ss_pred cCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCceEEeecCC---ccceeecC---HHHHHHHHhcCC
Confidence 8999888776543322110 0112235678888899999999987766321000 11111111 223444445543
Q ss_pred C-EEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcc
Q 014369 292 F-EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNV 370 (426)
Q Consensus 292 d-~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa 370 (426)
+ .-.+-|+.=...-.. +.+..+++..+. -..+|+||..+-... .+..+ +. ...+| -|..
T Consensus 170 ~~v~~~lD~~H~~~~~~--d~~~~~~~~~~r-I~hvH~kD~~~~~~~----~~~~~-----------~~-~~~pG-~G~i 229 (274)
T COG1082 170 PNVGLLLDTGHAFFAGE--DPLEAIRKLGDR-IGHVHLKDADGPTLD----IVNFL-----------GQ-HLPPG-DGDI 229 (274)
T ss_pred CceEEEEecCchhhccC--CHHHHHHHhhcc-eeEEEEeecCcchhc----ccCCC-----------cc-eeCCC-CCCc
Confidence 3 445667654433323 556666666664 488999999987655 11111 22 33455 6899
Q ss_pred cHHHHHHHHHhCCCC
Q 014369 371 ATEDVVYMLSGLGVE 385 (426)
Q Consensus 371 ~lEevv~~L~~lG~~ 385 (426)
+..++...|+..|++
T Consensus 230 d~~~i~~~L~~~gy~ 244 (274)
T COG1082 230 DFKAIFSALREAGYD 244 (274)
T ss_pred CHHHHHHHHHHcCCC
Confidence 999999999988776
No 181
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=95.54 E-value=0.28 Score=47.00 Aligned_cols=153 Identities=27% Similarity=0.365 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEe-CChhhHHHHHHcCCCEEEEec
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLT-PNLKGFEAAIAAGAKEVAIFA 222 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~ 222 (426)
-+.++.+.++++|.+.|++.||+++-+ | ++.+..+.++ ..+++-+.+-+ -+.++++.+.++|.+.+.-.
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl~s-p-------~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP- 92 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITLRT-P-------AALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSP- 92 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCC-C-------CHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECC-
Confidence 478899999999999999999999733 2 3445555554 56655555433 47889999999998865322
Q ss_pred cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--cCCC
Q 014369 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL--GDTI 300 (426)
Q Consensus 223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l--~DT~ 300 (426)
..+ .+++++|+++|+.+. | +-.+|.++. .+.++|++.+-+ +.++
T Consensus 93 ~~~-------------------~ev~~~a~~~~ip~~---------P--G~~TptEi~----~Ale~G~~~lK~FPa~~~ 138 (211)
T COG0800 93 GLN-------------------PEVAKAANRYGIPYI---------P--GVATPTEIM----AALELGASALKFFPAEVV 138 (211)
T ss_pred CCC-------------------HHHHHHHHhCCCccc---------C--CCCCHHHHH----HHHHcChhheeecCcccc
Confidence 111 378889999999765 2 233455543 355799987765 3333
Q ss_pred CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 301 GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 301 G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
|- ..+++.+.-=+|. +-+=-+=|-...|.-.=+.+|+..|
T Consensus 139 Gg------~~~~ka~~gP~~~----v~~~pTGGVs~~N~~~yla~gv~av 178 (211)
T COG0800 139 GG------PAMLKALAGPFPQ----VRFCPTGGVSLDNAADYLAAGVVAV 178 (211)
T ss_pred Cc------HHHHHHHcCCCCC----CeEeecCCCCHHHHHHHHhCCceEE
Confidence 22 2345554443444 3344567788889998888985544
No 182
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=95.52 E-value=0.44 Score=50.65 Aligned_cols=155 Identities=13% Similarity=0.163 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHHHhC--CCCeEEEec--C-CCCCccccccCHHHHHHHhHhcCCCcEEEEeC---ChhhHHHHHHcCCC
Q 014369 145 VPTGVKVELIRRLVSS--GLPVVEATS--F-VSPKWVPQLADARDVMEAVRDLEGARLPVLTP---NLKGFEAAIAAGAK 216 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~--Gv~~IEvG~--~-~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~---~~~di~~a~~~Gv~ 216 (426)
.+.+..++=++.+.+. |++.|-++= | ..++ ...++++.++.. +..+.+.++ +.+-++...++|..
T Consensus 227 rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~------~~~~l~~~l~~~-~i~~~~~~~~~~~~e~l~~l~~aG~~ 299 (472)
T TIGR03471 227 RSAESVIEEVKYALENFPEVREFFFDDDTFTDDKP------RAEEIARKLGPL-GVTWSCNARANVDYETLKVMKENGLR 299 (472)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHH------HHHHHHHHHhhc-CceEEEEecCCCCHHHHHHHHHcCCC
Confidence 4666666655555553 788776641 1 1111 123344444332 344443333 34567888899999
Q ss_pred EEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 014369 217 EVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS 295 (426)
Q Consensus 217 ~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~ 295 (426)
.|.+.+ +.|+..++ .+++.. ..+++.++++.++++|+.+.++++ +|.|.. +++.+.+..+.+.+.+.+.+.
T Consensus 300 ~v~iGiES~s~~~L~-~~~K~~--~~~~~~~~i~~~~~~Gi~v~~~~I--iGlPge---t~e~~~~ti~~~~~l~~~~~~ 371 (472)
T TIGR03471 300 LLLVGYESGDQQILK-NIKKGL--TVEIARRFTRDCHKLGIKVHGTFI--LGLPGE---TRETIRKTIDFAKELNPHTIQ 371 (472)
T ss_pred EEEEcCCCCCHHHHH-HhcCCC--CHHHHHHHHHHHHHCCCeEEEEEE--EeCCCC---CHHHHHHHHHHHHhcCCCcee
Confidence 988887 44454333 455432 345667888999999998887666 677765 467788888888888887765
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHh
Q 014369 296 LGDTIGVGTPGTVVPMLEAVMAV 318 (426)
Q Consensus 296 l~DT~G~~~P~~v~~li~~l~~~ 318 (426)
+ ..++|.---.+.+.+++.
T Consensus 372 ~----~~l~P~PGT~l~~~~~~~ 390 (472)
T TIGR03471 372 V----SLAAPYPGTELYDQAKQN 390 (472)
T ss_pred e----eecccCCCcHHHHHHHHC
Confidence 3 456666555666665543
No 183
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=95.52 E-value=3 Score=43.11 Aligned_cols=197 Identities=17% Similarity=0.121 Sum_probs=122.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc---------ccccc---CHHHHHHHhHhc---CCCcEEEEe---CCh-
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKW---------VPQLA---DARDVMEAVRDL---EGARLPVLT---PNL- 204 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~---------~p~~~---D~~~v~~~i~~~---~~~~l~~l~---~~~- 204 (426)
.+..++...++++-.+.+-+.|=-.++..-++ +|+.+ ....+...++.. ..+.+.... .+.
T Consensus 34 v~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPValHLDHg~~~~ 113 (357)
T TIGR01520 34 CTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVPVVLHTDHCAKKL 113 (357)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcc
Confidence 57888889999999999999876654422111 12110 111123333321 234444333 344
Q ss_pred -hhHHHHHHcC-----------CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC-
Q 014369 205 -KGFEAAIAAG-----------AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE- 271 (426)
Q Consensus 205 -~di~~a~~~G-----------v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~- 271 (426)
+.++.++++| ...|.+=.| . .+.+++++..++++++|+..|+.|++-|-.+-|.++.
T Consensus 114 ~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS--~--------lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~ 183 (357)
T TIGR01520 114 LPWVDGLLEAGEKYFSAHGKPLFSSHMIDLS--E--------EPIEENIEICVKYLKRMAKIKMWLEIEIGITGGEEDGV 183 (357)
T ss_pred hHHHHHHHHhhhhhhhhcCCCCCceEEeeCC--C--------CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCc
Confidence 4578888886 666655333 2 4678999999999999999999999888776455542
Q ss_pred ---------CCCCHHHHHHHHHHHH-hCCCCEE--EEcCCCCCCC---HHHHHHHHHHH----HHhcCC-----ceEEEE
Q 014369 272 ---------GAIPPSKVAYVAKELH-DMGCFEI--SLGDTIGVGT---PGTVVPMLEAV----MAVVPV-----EKLAVH 327 (426)
Q Consensus 272 ---------~r~~~~~l~~~~~~l~-~~Gad~I--~l~DT~G~~~---P~~v~~li~~l----~~~~p~-----~~i~~H 327 (426)
..++|+...+++++.. ..|+|.+ .+.-.=|.-. |.=-.++++.+ ++..+. .+|.+|
T Consensus 184 ~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLH 263 (357)
T TIGR01520 184 DNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPAAKPLFFVFH 263 (357)
T ss_pred ccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEe
Confidence 1478998888887653 3478854 4444444432 32233445555 344332 126665
Q ss_pred eCCCcCcHHHHHHHHHHcCCCEEee
Q 014369 328 LHDTYGQSLPNILISLQMGISTVDC 352 (426)
Q Consensus 328 ~HNd~GlA~ANaLaAl~aGa~~VD~ 352 (426)
+ --|+.--....|+..|+.-|+.
T Consensus 264 G--gSGi~~e~i~kai~~GI~KINi 286 (357)
T TIGR01520 264 G--GSGSTKQEIKEALSYGVVKMNI 286 (357)
T ss_pred C--CCCCCHHHHHHHHHCCCeEEEe
Confidence 5 5677788999999999987743
No 184
>PLN02334 ribulose-phosphate 3-epimerase
Probab=95.51 E-value=1.9 Score=41.39 Aligned_cols=170 Identities=16% Similarity=0.158 Sum_probs=100.6
Q ss_pred HHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEE--EEeCC-hhhHHHHHHcCCCEEEEeccC-C
Q 014369 150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLP--VLTPN-LKGFEAAIAAGAKEVAIFASA-S 225 (426)
Q Consensus 150 ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~--~l~~~-~~di~~a~~~Gv~~V~i~~~~-S 225 (426)
-.+.++.+.+.|++.|.+-..- ..++|+..-..+..+.++..++..+. .++.+ ...++.+.++|++.|.+...- .
T Consensus 22 l~~~l~~~~~~g~~~ihld~~d-~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~~q~~ 100 (229)
T PLN02334 22 LAEEAKRVLDAGADWLHVDVMD-GHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIEQAS 100 (229)
T ss_pred HHHHHHHHHHcCCCEEEEeccc-CCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEeecccc
Confidence 3567788889999999884211 11234332122455666665554433 33444 345788899999999554331 1
Q ss_pred hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC-CCEEE----EcCCC
Q 014369 226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEIS----LGDTI 300 (426)
Q Consensus 226 d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G-ad~I~----l~DT~ 300 (426)
-+...+.++.+++.|+.+...+. |. ++.+ .++.+.+.| +|.|. .+.+.
T Consensus 101 ---------------~d~~~~~~~~i~~~g~~iGls~~-----~~---t~~~----~~~~~~~~~~~Dyi~~~~v~pg~~ 153 (229)
T PLN02334 101 ---------------TIHLHRLIQQIKSAGMKAGVVLN-----PG---TPVE----AVEPVVEKGLVDMVLVMSVEPGFG 153 (229)
T ss_pred ---------------chhHHHHHHHHHHCCCeEEEEEC-----CC---CCHH----HHHHHHhccCCCEEEEEEEecCCC
Confidence 12245677788888987653221 11 2223 233444553 88773 23344
Q ss_pred CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369 301 GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 301 G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD 351 (426)
|...+....+.++.+++..+..+|.+ +=|.-..|+-..+++||+.|=
T Consensus 154 ~~~~~~~~~~~i~~~~~~~~~~~I~a----~GGI~~e~i~~l~~aGad~vv 200 (229)
T PLN02334 154 GQSFIPSMMDKVRALRKKYPELDIEV----DGGVGPSTIDKAAEAGANVIV 200 (229)
T ss_pred ccccCHHHHHHHHHHHHhCCCCcEEE----eCCCCHHHHHHHHHcCCCEEE
Confidence 54455666667788887755444544 336677899999999999873
No 185
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=95.48 E-value=0.74 Score=47.31 Aligned_cols=84 Identities=14% Similarity=0.031 Sum_probs=61.5
Q ss_pred hHHHHHHcCCCEEEEeccC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC----CCCHHHHH
Q 014369 206 GFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG----AIPPSKVA 280 (426)
Q Consensus 206 di~~a~~~Gv~~V~i~~~~-Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~----r~~~~~l~ 280 (426)
+++.|++.|++-|.+.+.. |+. ..+.++.+.++++.|++.|+.+.+ .++.-|..... .++++.++
T Consensus 151 sVedAlrLGAdAV~~tvy~Gs~~---------E~~ml~~l~~i~~ea~~~GlPlv~-~~YpRG~~i~~~~d~~~~~d~Ia 220 (348)
T PRK09250 151 SVEDALRLGAVAVGATIYFGSEE---------SRRQIEEISEAFEEAHELGLATVL-WSYLRNSAFKKDGDYHTAADLTG 220 (348)
T ss_pred cHHHHHHCCCCEEEEEEecCCHH---------HHHHHHHHHHHHHHHHHhCCCEEE-EecccCcccCCcccccccHHHHH
Confidence 5899999999966554432 331 236789999999999999999764 44444433222 23488999
Q ss_pred HHHHHHHhCCCCEEEEcCC
Q 014369 281 YVAKELHDMGCFEISLGDT 299 (426)
Q Consensus 281 ~~~~~l~~~Gad~I~l~DT 299 (426)
..++.+.++|||.|-..=|
T Consensus 221 ~AaRiaaELGADIVKv~yp 239 (348)
T PRK09250 221 QANHLAATIGADIIKQKLP 239 (348)
T ss_pred HHHHHHHHHcCCEEEecCC
Confidence 9999999999998877655
No 186
>PRK13753 dihydropteroate synthase; Provisional
Probab=95.47 E-value=2.9 Score=41.81 Aligned_cols=192 Identities=16% Similarity=0.124 Sum_probs=108.9
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCccccccCHHHHH---HHhHhcC--CCcEEEEeCChhhH
Q 014369 134 PRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVM---EAVRDLE--GARLPVLTPNLKGF 207 (426)
Q Consensus 134 LRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~~~v~---~~i~~~~--~~~l~~l~~~~~di 207 (426)
+=||++ .++.+..++-+..+.+.|.+.|++|.-++ |..-| ....+|+. ..++.+. +..+++=+...+-+
T Consensus 15 FsDGg~----~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~-vs~eeE~~Rv~pvI~~l~~~~~~ISIDT~~~~va 89 (279)
T PRK13753 15 FFDESR----RLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARP-VSPADEIRRIAPLLDALSDQMHRVSIDSFQPETQ 89 (279)
T ss_pred CCCCCC----CCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCc-CCHHHHHHHHHHHHHHHHhCCCcEEEECCCHHHH
Confidence 345544 46888989999999999999999997654 32111 11122333 3334332 34444444567778
Q ss_pred HHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC----CCCC--C-CH----
Q 014369 208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP----VEGA--I-PP---- 276 (426)
Q Consensus 208 ~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p----d~~r--~-~~---- 276 (426)
+.|+++|++.|.=.-..++ .++.+.+.+.+..+. +|+.-+.+ .... + +.
T Consensus 90 ~~al~aGadiINDVsg~~d------------------~~~~~vva~~~~~vV--lmH~~~~~~~~~~~~~~~~~dv~~ev 149 (279)
T PRK13753 90 RYALKRGVGYLNDIQGFPD------------------PALYPDIAEADCRLV--VMHSAQRDGIATRTGHLRPEDALDEI 149 (279)
T ss_pred HHHHHcCCCEEEeCCCCCc------------------hHHHHHHHHcCCCEE--EEecCCCCCCCCcccCCCcchHHHHH
Confidence 9999999997654322211 123333445676655 55543211 1111 1 11
Q ss_pred -HHHHHHHHHHHhCCC--CEEEEcCCCCCC---CHHHHHHHHHHHHHh-----cCCc-----------eEEEEeCCCcCc
Q 014369 277 -SKVAYVAKELHDMGC--FEISLGDTIGVG---TPGTVVPMLEAVMAV-----VPVE-----------KLAVHLHDTYGQ 334 (426)
Q Consensus 277 -~~l~~~~~~l~~~Ga--d~I~l~DT~G~~---~P~~v~~li~~l~~~-----~p~~-----------~i~~H~HNd~Gl 334 (426)
+++.+-++.+.++|+ +.|.|==-+|.+ ++++-.++++.+.+- +|.. -++...++...-
T Consensus 150 ~~~l~~~i~~~~~~Gi~~~~IilDPGiGF~k~k~~~~n~~ll~~l~~l~~~~g~PvLvg~SRKsfig~~~~~~~~~R~~~ 229 (279)
T PRK13753 150 VRFFEARVSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLKSALGLPLLVSVSRKSFLGATVGLPVKDLGPA 229 (279)
T ss_pred HHHHHHHHHHHHHcCCChhhEEEeCCCCCCCCCChHHHHHHHHhHHHHHHhCCCceEEEccHhHHHHHHcCCChhhhhHh
Confidence 344555667888998 478887778863 677777777765432 3431 011123333333
Q ss_pred HHHHHHHHHHcCCCEE
Q 014369 335 SLPNILISLQMGISTV 350 (426)
Q Consensus 335 A~ANaLaAl~aGa~~V 350 (426)
.+|.+..|+..||++|
T Consensus 230 T~a~~~~a~~~Ga~iv 245 (279)
T PRK13753 230 SLAAELHAIGNGADYV 245 (279)
T ss_pred HHHHHHHHHHcCCCEE
Confidence 4455566777888877
No 187
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.45 E-value=1.7 Score=44.78 Aligned_cols=220 Identities=13% Similarity=0.126 Sum_probs=130.4
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEecCC---CCCccccccCHHHHHHHhHh---cCCCcEEEEeCChhhHHHHHHcCCCEEE
Q 014369 146 PTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRD---LEGARLPVLTPNLKGFEAAIAAGAKEVA 219 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~~~~~di~~a~~~Gv~~V~ 219 (426)
+.++.+++|+.|.++|+..+--|+|- +|.....+. ++-++.+++ -.++.+..=.....+++.+.+. +|.+.
T Consensus 113 s~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g--~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~-~d~lq 189 (352)
T PRK13396 113 NEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHG--ESALELLAAAREATGLGIITEVMDAADLEKIAEV-ADVIQ 189 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCch--HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh-CCeEE
Confidence 67888999999999999999888763 232221121 333344432 2345544444577888888887 88888
Q ss_pred EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC-CCHHHHHHHHHHHHhCCCCEEEEcC
Q 014369 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAKELHDMGCFEISLGD 298 (426)
Q Consensus 220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r-~~~~~l~~~~~~l~~~Gad~I~l~D 298 (426)
|.... + .+ .++++++-+.|.+|- +.. +. .+++++...++.+.+.|...|.|+.
T Consensus 190 Iga~~----------~------~n-~~LL~~va~t~kPVl--lk~-------G~~~t~ee~~~A~e~i~~~Gn~~viL~e 243 (352)
T PRK13396 190 VGARN----------M------QN-FSLLKKVGAQDKPVL--LKR-------GMAATIDEWLMAAEYILAAGNPNVILCE 243 (352)
T ss_pred ECccc----------c------cC-HHHHHHHHccCCeEE--EeC-------CCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 86321 1 11 245666667788775 332 23 3789999999999999998888887
Q ss_pred C-----CCCCCHHHH--HHHHHHHHHhcCCceEEE---EeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCC
Q 014369 299 T-----IGVGTPGTV--VPMLEAVMAVVPVEKLAV---HLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGA 366 (426)
Q Consensus 299 T-----~G~~~P~~v--~~li~~l~~~~p~~~i~~---H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~gr 366 (426)
. . ...|... -..+..+++.+. .++-+ |.=-...+-.+-+++|+.+||+ .|+.=.. |.+
T Consensus 244 rG~rtf~-s~y~~~~~dl~ai~~lk~~~~-lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~--------pd~ 313 (352)
T PRK13396 244 RGIRTFD-RQYTRNTLDLSVIPVLRSLTH-LPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPN--------PAK 313 (352)
T ss_pred cCCccCc-CCCCCCCcCHHHHHHHHHhhC-CCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCC--------ccc
Confidence 6 3 1223222 122555666543 34533 4334444456899999999999 7765443 112
Q ss_pred CCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcc
Q 014369 367 SGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAI 414 (426)
Q Consensus 367 aGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pi 414 (426)
+. + +=. ..+ +.-++.+|++-.+.+.+.+|...++..+.
T Consensus 314 Al--s--D~~---qsl---~p~~~~~l~~~i~~i~~~~g~~~~~~~~~ 351 (352)
T PRK13396 314 AL--S--DGP---QSL---TPDRFDRLMQELAVIGKTVGRWPQPAAAL 351 (352)
T ss_pred CC--C--hhh---hcC---CHHHHHHHHHHHHHHHHHhCCCCCccccc
Confidence 21 0 100 001 12244555555566666777766655443
No 188
>PRK08227 autoinducer 2 aldolase; Validated
Probab=95.44 E-value=0.75 Score=45.63 Aligned_cols=124 Identities=20% Similarity=0.152 Sum_probs=82.4
Q ss_pred hHHHHHHcCCCEEEEeccC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369 206 GFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (426)
Q Consensus 206 di~~a~~~Gv~~V~i~~~~-Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~ 284 (426)
+++.|++.|++-|.+.+.. |+. -.+.|+++.++++.|.+.|+++-+ + +.-|... ..+++.++..++
T Consensus 99 sVeeAvrlGAdAV~~~v~~Gs~~---------E~~~l~~l~~v~~ea~~~G~Plla-~-~prG~~~--~~~~~~ia~aaR 165 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIGSEY---------EHQSIKNIIQLVDAGLRYGMPVMA-V-TAVGKDM--VRDARYFSLATR 165 (264)
T ss_pred cHHHHHHCCCCEEEEEEecCCHH---------HHHHHHHHHHHHHHHHHhCCcEEE-E-ecCCCCc--CchHHHHHHHHH
Confidence 6899999999966554432 331 247899999999999999999875 2 2233221 235678888999
Q ss_pred HHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEe-CC-CcCcHHHHHHHHHHcCCCEEee
Q 014369 285 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHL-HD-TYGQSLPNILISLQMGISTVDC 352 (426)
Q Consensus 285 ~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~-HN-d~GlA~ANaLaAl~aGa~~VD~ 352 (426)
...++|||.|-..=| .+.+.+.+ +.-|. |+-+=+ .- +.--.+.-+-.|+++||..|..
T Consensus 166 iaaELGADiVK~~y~-----~~~f~~vv----~a~~v-PVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~ 225 (264)
T PRK08227 166 IAAEMGAQIIKTYYV-----EEGFERIT----AGCPV-PIVIAGGKKLPERDALEMCYQAIDEGASGVDM 225 (264)
T ss_pred HHHHHcCCEEecCCC-----HHHHHHHH----HcCCC-cEEEeCCCCCCHHHHHHHHHHHHHcCCceeee
Confidence 999999999886654 13444444 34443 344422 11 2222678888899999998753
No 189
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=95.44 E-value=2 Score=44.51 Aligned_cols=178 Identities=19% Similarity=0.196 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEecCC---CCCccccccCHHHHHHHhH---hcCCCcEEEEeCChhhHHHHHHcCCCEEE
Q 014369 146 PTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVR---DLEGARLPVLTPNLKGFEAAIAAGAKEVA 219 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~~~v~~~i~---~~~~~~l~~l~~~~~di~~a~~~Gv~~V~ 219 (426)
+.++-+++|+.|.+.|+..+=-|+|- +|.....+. .+-++.++ .-.++.+.+=.....+++.+.+. ++.+.
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~--~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~-vd~lk 206 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLG--VEGLKILKQVADEYGLAVISEIVNPADVEVALDY-VDVIQ 206 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCC--HHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh-CCeEE
Confidence 67888999999999999988888663 222111111 12222222 22344444444577889999888 89888
Q ss_pred EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC-CCHHHHHHHHHHHHhCCCCEEEEcC
Q 014369 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAKELHDMGCFEISLGD 298 (426)
Q Consensus 220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r-~~~~~l~~~~~~l~~~Gad~I~l~D 298 (426)
|.-. + + .+ .++++++-+.|.+|. ++ .+. .+++++...++.+.+.|...|.|+.
T Consensus 207 I~s~--~--------~------~n-~~LL~~~a~~gkPVi--lk-------~G~~~t~~e~~~Ave~i~~~Gn~~i~L~e 260 (360)
T PRK12595 207 IGAR--N--------M------QN-FELLKAAGRVNKPVL--LK-------RGLSATIEEFIYAAEYIMSQGNGQIILCE 260 (360)
T ss_pred ECcc--c--------c------cC-HHHHHHHHccCCcEE--Ee-------CCCCCCHHHHHHHHHHHHHCCCCCEEEEC
Confidence 8632 1 1 11 256667777898876 33 133 5789999999999999998899987
Q ss_pred -CC-CC--CCHHHH-HHHHHHHHHhcCCceEEE-EeCCCcC---cHHHHHHHHHHcCCC--EEeecc
Q 014369 299 -TI-GV--GTPGTV-VPMLEAVMAVVPVEKLAV-HLHDTYG---QSLPNILISLQMGIS--TVDCSV 354 (426)
Q Consensus 299 -T~-G~--~~P~~v-~~li~~l~~~~p~~~i~~-H~HNd~G---lA~ANaLaAl~aGa~--~VD~Sv 354 (426)
.+ .+ ..++.+ -..|..+++.++ .|+++ =.|- .| +..+-+++|+.+||+ .|+.=.
T Consensus 261 rg~s~yp~~~~~~ldl~~i~~lk~~~~-~PV~~d~~Hs-~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 261 RGIRTYEKATRNTLDISAVPILKQETH-LPVMVDVTHS-TGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred CccCCCCCCCCCCcCHHHHHHHHHHhC-CCEEEeCCCC-CcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 22 11 112211 223556676665 35777 3443 45 667799999999996 665444
No 190
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=95.37 E-value=1.1 Score=45.19 Aligned_cols=165 Identities=17% Similarity=0.119 Sum_probs=101.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc-cCHHHHHHHhHhcCCC-cEEEEeCC---hhhHHHHHHcCCCEE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGA-RLPVLTPN---LKGFEAAIAAGAKEV 218 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~~~~-~l~~l~~~---~~di~~a~~~Gv~~V 218 (426)
.++.++..++++.+.+.|+..|-++. -. |-+ .|..++++.++..++. .+...+.. .+.++...++|++.|
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~ltG-GE----Pll~~~l~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~v 116 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRLTG-GE----PLLRKDLVELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKRV 116 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC-cc----ccccCCHHHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCeE
Confidence 57999999999999999999888753 12 222 2456666666665666 44443422 245677778999999
Q ss_pred EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC--EEE
Q 014369 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF--EIS 295 (426)
Q Consensus 219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad--~I~ 295 (426)
.|.+...+......+.. ....++++.+.++.+++.|+. +.+++... + ..+.+.+.++++.+.+.|++ -|.
T Consensus 117 ~ISld~~~~~~~~~i~~-~~~~~~~vl~~i~~l~~~G~~~v~in~vv~---~---g~n~~ei~~l~~~~~~~gv~~~~ie 189 (334)
T TIGR02666 117 NVSLDSLDPERFAKITR-RGGRLEQVLAGIDAALAAGLEPVKLNTVVM---R---GVNDDEIVDLAEFAKERGVTLRFIE 189 (334)
T ss_pred EEecccCCHHHhheeCC-CCCCHHHHHHHHHHHHHcCCCcEEEEEEEe---C---CCCHHHHHHHHHHHHhcCCeEEEEe
Confidence 98875432211112221 112466667788889999997 76544321 1 13557888899989999976 333
Q ss_pred EcCCCCCCC--H---HHHHHHHHHHHHhcC
Q 014369 296 LGDTIGVGT--P---GTVVPMLEAVMAVVP 320 (426)
Q Consensus 296 l~DT~G~~~--P---~~v~~li~~l~~~~p 320 (426)
+....+... . ....++++.+.+.++
T Consensus 190 ~mp~~~~~~~~~~~~~~~~ei~~~l~~~~~ 219 (334)
T TIGR02666 190 LMPLGEGNGWREKKFVSADEILERLEQAFG 219 (334)
T ss_pred ccCCCCCccchhhcccCHHHHHHHHHhhcc
Confidence 444433211 1 124566677766654
No 191
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=95.37 E-value=1.2 Score=43.58 Aligned_cols=200 Identities=15% Similarity=0.035 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCCcc-c-cc--cCHHHHHHHhHhcCCCcEEEEeC-----------C------
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWV-P-QL--ADARDVMEAVRDLEGARLPVLTP-----------N------ 203 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~-p-~~--~D~~~v~~~i~~~~~~~l~~l~~-----------~------ 203 (426)
++.++ .++.+.++|++.||+.......+. + .. .+.+++.+.++. .++++.+++. +
T Consensus 21 ~~~~e---~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gl~i~~~~~~~~~~~~~~~~~~~~r~~ 96 (283)
T PRK13209 21 ECWLE---KLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVE-TGFRVNSMCLSAHRRFPLGSEDDAVRAQ 96 (283)
T ss_pred CCHHH---HHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHH-cCCceeEEecccccccCCCCCCHHHHHH
Confidence 45554 455567999999999753211100 0 00 122333333332 3555544321 1
Q ss_pred -----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH
Q 014369 204 -----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK 278 (426)
Q Consensus 204 -----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~ 278 (426)
.+.++.|.+.|++.|.+.-.... .........+...+.+.+++++|+++|+.+. +... +...-.+++.
T Consensus 97 ~~~~~~~~i~~a~~lG~~~i~~~~~~~~--~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~--iE~~---~~~~~~~~~~ 169 (283)
T PRK13209 97 ALEIMRKAIQLAQDLGIRVIQLAGYDVY--YEQANNETRRRFIDGLKESVELASRASVTLA--FEIM---DTPFMNSISK 169 (283)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccc--ccccHHHHHHHHHHHHHHHHHHHHHhCCEEE--Eeec---CCcccCCHHH
Confidence 02346677789998876421100 0000001123446667788899999997665 2221 1122235555
Q ss_pred HHHHHHHHHhCCCCEEEE-cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 014369 279 VAYVAKELHDMGCFEISL-GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL 357 (426)
Q Consensus 279 l~~~~~~l~~~Gad~I~l-~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~Gl 357 (426)
+.++++ +.+-+.+.+ -|+.=...-. ......++. ...--..+|.+|..+- +-+. ..+
T Consensus 170 ~~~ll~---~v~~~~lgl~~D~~h~~~~~--~~~~~~i~~-~~~~i~~vHikD~~~~-----------~~~~-----~~~ 227 (283)
T PRK13209 170 ALGYAH---YLNSPWFQLYPDIGNLSAWD--NDVQMELQA-GIGHIVAFHVKDTKPG-----------VFKN-----VPF 227 (283)
T ss_pred HHHHHH---HhCCCccceEeccchHHHhc--CCHHHHHHh-CcCcEEEEEeccCCCC-----------CCce-----eCC
Confidence 555554 444444433 3653221110 012223332 3222478899987531 1111 123
Q ss_pred CCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369 358 GGCPYAKGASGNVATEDVVYMLSGLGVE 385 (426)
Q Consensus 358 GecP~a~graGNa~lEevv~~L~~lG~~ 385 (426)
| .|..+.+.++.+|+..|++
T Consensus 228 G--------~G~id~~~i~~~L~~~gy~ 247 (283)
T PRK13209 228 G--------EGVVDFERCFKTLKQSGYC 247 (283)
T ss_pred C--------CCccCHHHHHHHHHHcCCC
Confidence 3 5889999999999987765
No 192
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=95.32 E-value=0.88 Score=44.91 Aligned_cols=179 Identities=14% Similarity=0.125 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEecCC---CCCccccccCHHHHHHHhHh---cCCCcEEEEeCChhhHHHHHHcCCCEEE
Q 014369 146 PTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRD---LEGARLPVLTPNLKGFEAAIAAGAKEVA 219 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~~~~~di~~a~~~Gv~~V~ 219 (426)
+.++-+++|+.|.+.|+...-.+.+- +|.....+ .++-++.+++ -.++.+.+=..+...++.+.+. ++.+.
T Consensus 37 ~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~--g~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~-~d~lk 113 (260)
T TIGR01361 37 SEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGL--GEEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY-ADILQ 113 (260)
T ss_pred CHHHHHHHHHHHHHHHHHhccCceecCCCCCcccccc--HHHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh-CCEEE
Confidence 67788999999999998855444331 22111111 1233333332 2344444444567888888887 88887
Q ss_pred EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCC-CHHHHHHHHHHHHhCCCCEEEEcC
Q 014369 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI-PPSKVAYVAKELHDMGCFEISLGD 298 (426)
Q Consensus 220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~-~~~~l~~~~~~l~~~Gad~I~l~D 298 (426)
|... +. .+ .++++++.+.|.+|. ++. +.. +++++...++.+.+.|.+.|.|+.
T Consensus 114 I~s~--~~--------------~n-~~LL~~~a~~gkPVi--lk~-------G~~~t~~e~~~Ave~i~~~Gn~~i~l~~ 167 (260)
T TIGR01361 114 IGAR--NM--------------QN-FELLKEVGKQGKPVL--LKR-------GMGNTIEEWLYAAEYILSSGNGNVILCE 167 (260)
T ss_pred ECcc--cc--------------cC-HHHHHHHhcCCCcEE--EeC-------CCCCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 7632 11 00 246667777898876 331 223 789999999999999998888887
Q ss_pred C-C-CC-CCHHHHH--HHHHHHHHhcCCceEEE-EeCC--CcCcHHHHHHHHHHcCCC--EEeecc
Q 014369 299 T-I-GV-GTPGTVV--PMLEAVMAVVPVEKLAV-HLHD--TYGQSLPNILISLQMGIS--TVDCSV 354 (426)
Q Consensus 299 T-~-G~-~~P~~v~--~li~~l~~~~p~~~i~~-H~HN--d~GlA~ANaLaAl~aGa~--~VD~Sv 354 (426)
. + .+ -.|.... ..+..+++.++ .+|++ =.|- +.-+..+-+++|+.+||+ .|+.-+
T Consensus 168 rG~s~y~~~~~~~~dl~~i~~lk~~~~-~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 168 RGIRTFEKATRNTLDLSAVPVLKKETH-LPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred CCCCCCCCCCcCCcCHHHHHHHHHhhC-CCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence 4 2 33 2333322 33666676654 46787 4443 223446778899999999 565443
No 193
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=95.30 E-value=1.1 Score=40.55 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHHHHHhCCCC-----eEEEecCCCCCccccccCHHHHHHHhHhcC----CCcEEEEeC----ChhhHHHH
Q 014369 144 TVPTGVKVELIRRLVSSGLP-----VVEATSFVSPKWVPQLADARDVMEAVRDLE----GARLPVLTP----NLKGFEAA 210 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~-----~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~----~~~l~~l~~----~~~di~~a 210 (426)
..+.++..+.++.+.+.|.. .+-++.. .|...|. ....++++.++... ...+...+. +.+.++..
T Consensus 29 ~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~~~~~l 106 (216)
T smart00729 29 SRYLEALVREIELLAEKGEKEILVGTVFIGGG-TPTLLSP-EQLEELLEAIREILGLADDVEITIETRPGTLTEELLEAL 106 (216)
T ss_pred HHHHHHHHHHHHHHHhcccCCcceeEEEECCC-CCCCCCH-HHHHHHHHHHHHhCCCCCCeEEEEEeCcccCCHHHHHHH
Confidence 45667777777777665543 3333221 1110010 01345666666433 233333332 35678888
Q ss_pred HHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369 211 IAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS-IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (426)
Q Consensus 211 ~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G-~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~ 289 (426)
.+.|.+.+.+.+-..+......++.. ..++++.+.++.++++| +.+...++ .|.+ ..+.+.+.++++.+.+.
T Consensus 107 ~~~~~~~i~isl~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~g~~~v~~~~~--~g~~---~~~~~~~~~~~~~~~~~ 179 (216)
T smart00729 107 KEAGVNRVSLGVQSGSDEVLKAINRG--HTVEDVLEAVEKLREAGPIKVSTDLI--VGLP---GETEEDFEETLKLLKEL 179 (216)
T ss_pred HHcCCCeEEEecccCCHHHHHHhcCC--CCHHHHHHHHHHHHHhCCcceEEeEE--ecCC---CCCHHHHHHHHHHHHHc
Confidence 89999988887654332222223222 23477778888999999 77776555 3333 24678999999999999
Q ss_pred CCCEEEEcCC
Q 014369 290 GCFEISLGDT 299 (426)
Q Consensus 290 Gad~I~l~DT 299 (426)
|++.|.+..-
T Consensus 180 ~~~~i~~~~~ 189 (216)
T smart00729 180 GPDRVSIFPL 189 (216)
T ss_pred CCCeEEeeee
Confidence 9997776443
No 194
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=95.27 E-value=0.4 Score=46.02 Aligned_cols=168 Identities=17% Similarity=0.152 Sum_probs=108.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeC----ChhhHHHHHHcCCCEE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTP----NLKGFEAAIAAGAKEV 218 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~----~~~di~~a~~~Gv~~V 218 (426)
..+.+..+++++.+.+. ++.||+|.|.-.. .--...+.+| ..|+..+.+=.- ..-.++.|.++|+|.+
T Consensus 12 ~~~l~~Ai~~a~~v~~~-~diiEvGTpLik~------eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~ 84 (217)
T COG0269 12 LLDLEEAIEIAEEVADY-VDIIEVGTPLIKA------EGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWV 84 (217)
T ss_pred ccCHHHHHHHHHHhhhc-ceEEEeCcHHHHH------hhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEE
Confidence 56888999999999999 9999999864211 1123344555 346655544221 2345788999999999
Q ss_pred EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-
Q 014369 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG- 297 (426)
Q Consensus 219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~- 297 (426)
.+...+. .+.+..+++.|++.|..+.+.++.+ .+|+.. .+.+.++|++.+.+=
T Consensus 85 tV~g~A~---------------~~TI~~~i~~A~~~~~~v~iDl~~~--------~~~~~~---~~~l~~~gvd~~~~H~ 138 (217)
T COG0269 85 TVLGAAD---------------DATIKKAIKVAKEYGKEVQIDLIGV--------WDPEQR---AKWLKELGVDQVILHR 138 (217)
T ss_pred EEEecCC---------------HHHHHHHHHHHHHcCCeEEEEeecC--------CCHHHH---HHHHHHhCCCEEEEEe
Confidence 8875443 3556788899999999988766532 345543 445556999887762
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 298 ----DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 298 ----DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
-+.|.--+.+.-+-++.+... ...+.+- =|.-.-+.-.....|++.|
T Consensus 139 g~D~q~~G~~~~~~~l~~ik~~~~~--g~~vAVa----GGI~~~~i~~~~~~~~~iv 189 (217)
T COG0269 139 GRDAQAAGKSWGEDDLEKIKKLSDL--GAKVAVA----GGITPEDIPLFKGIGADIV 189 (217)
T ss_pred cccHhhcCCCccHHHHHHHHHhhcc--CceEEEe----cCCCHHHHHHHhcCCCCEE
Confidence 233554434444444444331 2345553 4778888888888887765
No 195
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=95.26 E-value=0.94 Score=46.44 Aligned_cols=143 Identities=10% Similarity=0.069 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHhCC---CCeEEEecCCCCCccccccCHHHHHHHhHh-c---CCCcEEEEe-C---ChhhHHHHHHc
Q 014369 145 VPTGVKVELIRRLVSSG---LPVVEATSFVSPKWVPQLADARDVMEAVRD-L---EGARLPVLT-P---NLKGFEAAIAA 213 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~G---v~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~---~~~~l~~l~-~---~~~di~~a~~~ 213 (426)
+......+|...+...| ++.|=+|-. .|-.++. .+..++++.+++ . ++..+.+-+ | +.+.++...++
T Consensus 32 y~~~l~~Ei~~~~~~~~~~~v~~i~~GGG-tPs~l~~-~~l~~ll~~i~~~~~~~~~~eitie~np~~lt~e~l~~l~~~ 109 (360)
T TIGR00539 32 YTQALCQDLKHALSQTDQEPLESIFIGGG-TPNTLSV-EAFERLFESIYQHASLSDDCEITTEANPELITAEWCKGLKGA 109 (360)
T ss_pred HHHHHHHHHHHHHHhcCCCcccEEEeCCC-chhcCCH-HHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHc
Confidence 34555556665555556 556655421 1111110 223445555542 1 345566544 3 34667888899
Q ss_pred CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369 214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF 292 (426)
Q Consensus 214 Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad 292 (426)
|+.+|.+.+..-+...-..+|+. ...+++.++++.+++.|+. +.+.++ +|.|.. +.+.+.+.++.+.++|++
T Consensus 110 Gv~risiGvqS~~~~~l~~lgR~--~~~~~~~~ai~~l~~~G~~~v~~dli--~GlPgq---t~~~~~~~l~~~~~l~~~ 182 (360)
T TIGR00539 110 GINRLSLGVQSFRDDKLLFLGRQ--HSAKNIAPAIETALKSGIENISLDLM--YGLPLQ---TLNSLKEELKLAKELPIN 182 (360)
T ss_pred CCCEEEEecccCChHHHHHhCCC--CCHHHHHHHHHHHHHcCCCeEEEecc--CCCCCC---CHHHHHHHHHHHHccCCC
Confidence 99999998753332222334542 2245566788899999996 665555 666654 567888888889999998
Q ss_pred EEEE
Q 014369 293 EISL 296 (426)
Q Consensus 293 ~I~l 296 (426)
.|.+
T Consensus 183 ~is~ 186 (360)
T TIGR00539 183 HLSA 186 (360)
T ss_pred EEEe
Confidence 8865
No 196
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.17 E-value=2.8 Score=39.22 Aligned_cols=154 Identities=19% Similarity=0.228 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-CCCcEEE-EeCChhhHHHHHHcCCCEEEEecc
Q 014369 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPV-LTPNLKGFEAAIAAGAKEVAIFAS 223 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~ 223 (426)
+.++-+++++.+.+.|++.||+..-.. +..++++.++.. +.+...+ ..-..++++.|+++|++.|++..-
T Consensus 22 ~~~~~~~~~~~~~~~Gv~~vqlr~k~~--------~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~~ 93 (187)
T PRK07455 22 DLELGLQMAEAVAAGGMRLIEITWNSD--------QPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPHV 93 (187)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCC--------CHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCCC
Confidence 788889999999999999999986321 345666666643 4343332 223448999999999999977532
Q ss_pred CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 014369 224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG 303 (426)
Q Consensus 224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~ 303 (426)
. .+.++.++.+++... .| -.+++.+.+ +.++|+|.|.+==|.-..
T Consensus 94 ~--------------------~~~~~~~~~~~~~~i------~G-----~~t~~e~~~----A~~~Gadyv~~Fpt~~~~ 138 (187)
T PRK07455 94 D--------------------PELIEAAVAQDIPII------PG-----ALTPTEIVT----AWQAGASCVKVFPVQAVG 138 (187)
T ss_pred C--------------------HHHHHHHHHcCCCEE------cC-----cCCHHHHHH----HHHCCCCEEEECcCCccc
Confidence 1 144456667776532 33 234555433 446999998873331111
Q ss_pred CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 304 TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 304 ~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
=.++++.++..+|.+++-.= =|....|+-.-+++|++.|
T Consensus 139 ----G~~~l~~~~~~~~~ipvvai----GGI~~~n~~~~l~aGa~~v 177 (187)
T PRK07455 139 ----GADYIKSLQGPLGHIPLIPT----GGVTLENAQAFIQAGAIAV 177 (187)
T ss_pred ----CHHHHHHHHhhCCCCcEEEe----CCCCHHHHHHHHHCCCeEE
Confidence 14557777776654444332 2666799999999999976
No 197
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=95.16 E-value=0.87 Score=45.33 Aligned_cols=160 Identities=21% Similarity=0.253 Sum_probs=102.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCC---ccccccCHHHHHHHhHh-cCCCcEEEEeCChh----hHHHHHHc
Q 014369 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPK---WVPQLADARDVMEAVRD-LEGARLPVLTPNLK----GFEAAIAA 213 (426)
Q Consensus 142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~---~~p~~~D~~~v~~~i~~-~~~~~l~~l~~~~~----di~~a~~~ 213 (426)
...++.++-..+|+...++|++++-+++-...+ +..+ .+.++++.+++ .|++++-+|+|... .++..+++
T Consensus 94 P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~--hfa~~i~~Ire~~P~t~iEvL~PDF~G~~~al~~v~~~ 171 (306)
T COG0320 94 PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQ--HFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVADA 171 (306)
T ss_pred CCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchH--HHHHHHHHHHhhCCCceEEEeCccccCCHHHHHHHHhc
Confidence 346788899999999999999999999865422 1111 24567777774 57899999998643 45566667
Q ss_pred CCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC
Q 014369 214 GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG 290 (426)
Q Consensus 214 Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G--~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G 290 (426)
+.+.+.=-+ .+--++.+...+-+.+.+| ++.+++|+.+ +..-..||...| -+.+++.+..+.|.+.|
T Consensus 172 ~pdV~nHNvETVprL~~~VRp~A~Y~~SL----~~L~~~k~~~P~i~TKSgiMlGLG------Et~~Ev~e~m~DLr~~g 241 (306)
T COG0320 172 GPDVFNHNVETVPRLYPRVRPGATYERSL----SLLERAKELGPDIPTKSGLMVGLG------ETDEEVIEVMDDLRSAG 241 (306)
T ss_pred CcchhhcccccchhcccccCCCCcHHHHH----HHHHHHHHhCCCcccccceeeecC------CcHHHHHHHHHHHHHcC
Confidence 765332111 0001111122345566666 5666888888 444445664332 24688999999999999
Q ss_pred CCEEEEcC----------CCCCCCHHHHHHHHH
Q 014369 291 CFEISLGD----------TIGVGTPGTVVPMLE 313 (426)
Q Consensus 291 ad~I~l~D----------T~G~~~P~~v~~li~ 313 (426)
+|.+.|.- -.-+-+|+++..+=+
T Consensus 242 vdilTiGQYlqPS~~HlpV~ryv~PeeF~~~~~ 274 (306)
T COG0320 242 VDILTIGQYLQPSRKHLPVQRYVTPEEFDELEE 274 (306)
T ss_pred CCEEEeccccCCccccCCceeccCHHHHHHHHH
Confidence 99998753 223456666665433
No 198
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=95.15 E-value=0.49 Score=45.78 Aligned_cols=111 Identities=25% Similarity=0.253 Sum_probs=80.5
Q ss_pred EEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC---HHHHHHHHHHHHHhcCCc-----eEEEEeCCCcC
Q 014369 262 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT---PGTVVPMLEAVMAVVPVE-----KLAVHLHDTYG 333 (426)
Q Consensus 262 v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~---P~~v~~li~~l~~~~p~~-----~i~~H~HNd~G 333 (426)
++.+.|+|.+.-+..-.+.+ ++.+.+.|||+|-+.=..|.+. .+.|.+-|+.+++..++. .|+.-.=+|--
T Consensus 63 v~tVigFP~G~~~t~~K~~E-a~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee 141 (228)
T COG0274 63 VCTVIGFPLGANTTAVKAAE-AREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEE 141 (228)
T ss_pred EEEecCCCCCCChHHHHHHH-HHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHH
Confidence 56667889765443334444 6788899999999888887654 567788888888877641 25555555555
Q ss_pred cHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCC
Q 014369 334 QSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG 383 (426)
Q Consensus 334 lA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG 383 (426)
. ...+..++++||+.|=+|-+. .+|++.+|++..+.+..|
T Consensus 142 ~-~~A~~i~~~aGAdFVKTSTGf---------~~~gAT~edv~lM~~~vg 181 (228)
T COG0274 142 K-RKACEIAIEAGADFVKTSTGF---------SAGGATVEDVKLMKETVG 181 (228)
T ss_pred H-HHHHHHHHHhCCCEEEcCCCC---------CCCCCCHHHHHHHHHHhc
Confidence 5 667778899999999988753 357899999988887533
No 199
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=95.11 E-value=0.6 Score=50.15 Aligned_cols=156 Identities=12% Similarity=0.040 Sum_probs=96.5
Q ss_pred CCHHHHHHHHHHH-HhCCCCeEEEec--C-CCCCccccccCHHHHHHHhHhc--CCCcEEEEeC------ChhhHHHHHH
Q 014369 145 VPTGVKVELIRRL-VSSGLPVVEATS--F-VSPKWVPQLADARDVMEAVRDL--EGARLPVLTP------NLKGFEAAIA 212 (426)
Q Consensus 145 f~~~~ki~I~~~L-~~~Gv~~IEvG~--~-~s~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~~------~~~di~~a~~ 212 (426)
-+.+..++=++.| .+.|+..|.+.- | .+++ ...++++.+.+. .+..+.+-++ +.+-++...+
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~------~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~ 295 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFFILADEEPTINRK------KFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRR 295 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecccccCHH------HHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHH
Confidence 3555555544544 568998876531 1 1211 123444444322 1333333333 2234677788
Q ss_pred cCCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 014369 213 AGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291 (426)
Q Consensus 213 ~Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Ga 291 (426)
+|+..|.+.+ +.|+..+ ..+++.. ..+++.++++.++++|+.+.++++ +|.|.. +.+.+.+.++.+.+++.
T Consensus 296 aG~~~v~iGiES~~~~~L-~~~~K~~--t~~~~~~ai~~l~~~Gi~~~~~~I--~G~P~e---t~e~~~~t~~~~~~l~~ 367 (497)
T TIGR02026 296 AGLVHISLGTEAAAQATL-DHFRKGT--TTSTNKEAIRLLRQHNILSEAQFI--TGFENE---TDETFEETYRQLLDWDP 367 (497)
T ss_pred hCCcEEEEccccCCHHHH-HHhcCCC--CHHHHHHHHHHHHHCCCcEEEEEE--EECCCC---CHHHHHHHHHHHHHcCC
Confidence 9999888876 4454333 3355432 245567888999999999876665 677765 46888888888999999
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHh
Q 014369 292 FEISLGDTIGVGTPGTVVPMLEAVMAV 318 (426)
Q Consensus 292 d~I~l~DT~G~~~P~~v~~li~~l~~~ 318 (426)
+.+.+ ..++|.---.+.+.+++.
T Consensus 368 ~~~~~----~~~tP~PGT~l~~~~~~~ 390 (497)
T TIGR02026 368 DQANW----LMYTPWPFTSLFGELSDR 390 (497)
T ss_pred CceEE----EEecCCCCcHHHHHHHhh
Confidence 88776 367776666677666654
No 200
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.11 E-value=0.75 Score=46.00 Aligned_cols=137 Identities=15% Similarity=0.217 Sum_probs=93.4
Q ss_pred hhhHHHHHHcCCCEEEEec-cCChHHHhhhcCC-CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369 204 LKGFEAAIAAGAKEVAIFA-SASEAFSKSNINC-SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 281 (426)
Q Consensus 204 ~~di~~a~~~Gv~~V~i~~-~~Sd~~~~~~~~~-s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~ 281 (426)
.-....+.+.|.+-+.+.- +++...-.--++. |.++.++.++++++. -.++|.+.+-..| -++..++.
T Consensus 28 ~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a---~~lPv~vD~dtGf-------G~~~nvar 97 (289)
T COG2513 28 AGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDA---VDLPVLVDIDTGF-------GEALNVAR 97 (289)
T ss_pred HHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhh---cCCceEEeccCCC-------CcHHHHHH
Confidence 3445566778887766641 1111111111222 578888888776654 4777776665433 24788999
Q ss_pred HHHHHHhCCCCEEEEcCCCCC-----------CCHHHHHHHHHHHHHhcCCceEEE------EeCCCcCcHHHHHHHHHH
Q 014369 282 VAKELHDMGCFEISLGDTIGV-----------GTPGTVVPMLEAVMAVVPVEKLAV------HLHDTYGQSLPNILISLQ 344 (426)
Q Consensus 282 ~~~~l~~~Gad~I~l~DT~G~-----------~~P~~v~~li~~l~~~~p~~~i~~------H~HNd~GlA~ANaLaAl~ 344 (426)
.++.+.++|+.-|.|-|.++- ..+.++.+.|++.++..++..+.+ ..+.-+.-++.-+.+=++
T Consensus 98 tV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~e 177 (289)
T COG2513 98 TVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVE 177 (289)
T ss_pred HHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999984 566778888888888765333332 444447778888999999
Q ss_pred cCCCEE
Q 014369 345 MGISTV 350 (426)
Q Consensus 345 aGa~~V 350 (426)
||||.|
T Consensus 178 AGAD~i 183 (289)
T COG2513 178 AGADAI 183 (289)
T ss_pred cCCcEE
Confidence 999977
No 201
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=94.98 E-value=2.4 Score=41.79 Aligned_cols=163 Identities=15% Similarity=0.199 Sum_probs=96.2
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC----ChhhHHHHHHcCCCEEEE
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP----NLKGFEAAIAAGAKEVAI 220 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----~~~di~~a~~~Gv~~V~i 220 (426)
.+..+-.++++...+.|.+-|-+= ..+++.. .+. +.+..+++.. .++++.. ....++.+.++|+|.|.+
T Consensus 67 ~~~~~~~~~A~~~~~~GA~aisvl--te~~~f~--g~~-~~l~~v~~~v--~iPvl~kdfi~~~~qi~~a~~~GAD~VlL 139 (260)
T PRK00278 67 REDFDPVEIAKAYEAGGAACLSVL--TDERFFQ--GSL-EYLRAARAAV--SLPVLRKDFIIDPYQIYEARAAGADAILL 139 (260)
T ss_pred CCCCCHHHHHHHHHhCCCeEEEEe--cccccCC--CCH-HHHHHHHHhc--CCCEEeeeecCCHHHHHHHHHcCCCEEEE
Confidence 344456789999999999988551 1222211 122 3344455332 2344433 334789999999999999
Q ss_pred eccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcC-C
Q 014369 221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD-T 299 (426)
Q Consensus 221 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~D-T 299 (426)
....=+ .+.+.+++++++++|+.+.+.+. +.+.+ +++.++|++.|.+.. .
T Consensus 140 i~~~l~--------------~~~l~~li~~a~~lGl~~lvevh-----------~~~E~----~~A~~~gadiIgin~rd 190 (260)
T PRK00278 140 IVAALD--------------DEQLKELLDYAHSLGLDVLVEVH-----------DEEEL----ERALKLGAPLIGINNRN 190 (260)
T ss_pred EeccCC--------------HHHHHHHHHHHHHcCCeEEEEeC-----------CHHHH----HHHHHcCCCEEEECCCC
Confidence 865411 14677899999999998764321 23333 446688999999864 1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCc-e-EEE-EeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 300 IGVGTPGTVVPMLEAVMAVVPVE-K-LAV-HLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 300 ~G~~~P~~v~~li~~l~~~~p~~-~-i~~-H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
.....|. .+.+..+.+.+|.. + |.. ..+ ...++-.+.++|++.|
T Consensus 191 l~~~~~d--~~~~~~l~~~~p~~~~vIaegGI~-----t~ed~~~~~~~Gad~v 237 (260)
T PRK00278 191 LKTFEVD--LETTERLAPLIPSDRLVVSESGIF-----TPEDLKRLAKAGADAV 237 (260)
T ss_pred cccccCC--HHHHHHHHHhCCCCCEEEEEeCCC-----CHHHHHHHHHcCCCEE
Confidence 1122222 22344444555531 2 222 222 2567778889999876
No 202
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=94.87 E-value=0.26 Score=52.71 Aligned_cols=78 Identities=22% Similarity=0.183 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 014369 277 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG 356 (426)
Q Consensus 277 ~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~G 356 (426)
+...+.++.|.+.|++.|.| |+.= ..|..+.++|+.+++.+|+.++-+ +.+.-...+..++++||+.|++.+.|
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~-D~a~-g~~~~~~~~i~~i~~~~~~~~vi~----g~~~t~~~~~~l~~~G~d~i~vg~g~ 297 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVI-DTAH-GHQVKMISAIKAVRALDLGVPIVA----GNVVSAEGVRDLLEAGANIIKVGVGP 297 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEE-eCCC-CCcHHHHHHHHHHHHHCCCCeEEE----eccCCHHHHHHHHHhCCCEEEECCcC
Confidence 34557788899999999887 7776 788999999999999998766666 66777788899999999999976665
Q ss_pred CCCC
Q 014369 357 LGGC 360 (426)
Q Consensus 357 lGec 360 (426)
=.-|
T Consensus 298 Gs~~ 301 (475)
T TIGR01303 298 GAMC 301 (475)
T ss_pred Cccc
Confidence 3333
No 203
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=94.87 E-value=1.2 Score=45.87 Aligned_cols=137 Identities=12% Similarity=0.062 Sum_probs=87.4
Q ss_pred hHHHHHHcCCCEEEEec--cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEE-EeeecCCCCCC-----CCHH
Q 014369 206 GFEAAIAAGAKEVAIFA--SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV-SCVVGCPVEGA-----IPPS 277 (426)
Q Consensus 206 di~~a~~~Gv~~V~i~~--~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v-~~~fg~pd~~r-----~~~~ 277 (426)
.++.+++.|+|-|-+.+ ...+.. + -.++.++.+.++.+.|++.|+++.+-+ ++..+..+... .+|+
T Consensus 111 sve~a~~~GAdAVk~lv~~~~d~~~-~-----~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~ 184 (340)
T PRK12858 111 SVRRIKEAGADAVKLLLYYRPDEDD-A-----INDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPE 184 (340)
T ss_pred cHHHHHHcCCCEEEEEEEeCCCcch-H-----HHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHH
Confidence 36889999999665544 322110 0 023667889999999999999987542 33322222211 5789
Q ss_pred HHHHHHHHHHh--CCCCEEEEcCCC------C------CCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHH
Q 014369 278 KVAYVAKELHD--MGCFEISLGDTI------G------VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL 343 (426)
Q Consensus 278 ~l~~~~~~l~~--~Gad~I~l~DT~------G------~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl 343 (426)
.+...++.+.+ +|+|.+-+.=+. | +.+-.+..+.++.+.+..|...|-+=.--+...-+...-.|+
T Consensus 185 ~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~~~~~f~~~l~~A~ 264 (340)
T PRK12858 185 KVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGVSPELFRRTLEFAC 264 (340)
T ss_pred HHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHHH
Confidence 99999999995 999988885442 1 114455556666666665542233333335555677777899
Q ss_pred HcCCC
Q 014369 344 QMGIS 348 (426)
Q Consensus 344 ~aGa~ 348 (426)
++|++
T Consensus 265 ~aGa~ 269 (340)
T PRK12858 265 EAGAD 269 (340)
T ss_pred HcCCC
Confidence 99993
No 204
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=94.78 E-value=0.91 Score=44.31 Aligned_cols=180 Identities=17% Similarity=0.174 Sum_probs=106.6
Q ss_pred HHHHHhCCCCeEEEecCC--CCCcccc--ccCHHHHHHHhHhcC-CCcEEEEeC------C-h----hhHHHHHHcCCCE
Q 014369 154 IRRLVSSGLPVVEATSFV--SPKWVPQ--LADARDVMEAVRDLE-GARLPVLTP------N-L----KGFEAAIAAGAKE 217 (426)
Q Consensus 154 ~~~L~~~Gv~~IEvG~~~--s~~~~p~--~~D~~~v~~~i~~~~-~~~l~~l~~------~-~----~di~~a~~~Gv~~ 217 (426)
++.+.++|++.|=.+++. ...+.|. +-+..++++.++++. .+.+++++- + . +.++...++|+.-
T Consensus 22 Ar~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~ag 101 (238)
T PF13714_consen 22 ARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELERAGAAG 101 (238)
T ss_dssp HHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SE
T ss_pred HHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHHcCCcE
Confidence 566778899998886541 1123443 346678888877653 245555542 2 2 3567778899999
Q ss_pred EEEecc-CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369 218 VAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (426)
Q Consensus 218 V~i~~~-~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l 296 (426)
|+|-.. .+ | ..+-=.+.+++.++++.+.+..++.++-+.+-- .++.. .....++..+-+++..++|||.|.+
T Consensus 102 i~IEDq~~~--~-~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ART-Da~~~---~~~~~deaI~R~~aY~eAGAD~ifi 174 (238)
T PF13714_consen 102 INIEDQRCG--H-GGKQLVSPEEMVAKIRAAVDARRDPDFVIIART-DAFLR---AEEGLDEAIERAKAYAEAGADMIFI 174 (238)
T ss_dssp EEEESBSTT--T-STT-B--HHHHHHHHHHHHHHHSSTTSEEEEEE-CHHCH---HHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred EEeeccccC--C-CCCceeCHHHHHHHHHHHHHhccCCeEEEEEec-ccccc---CCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 999977 22 2 222223899999999988888888885443211 11100 0123355666677778899999987
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369 297 GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 352 (426)
Q Consensus 297 ~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~ 352 (426)
. |..+.+++.++.+.+ + .|+-+..+ .+. -+.-.--++|+++|-.
T Consensus 175 ~---~~~~~~~i~~~~~~~----~-~Pl~v~~~--~~~--~~~~eL~~lGv~~v~~ 218 (238)
T PF13714_consen 175 P---GLQSEEEIERIVKAV----D-GPLNVNPG--PGT--LSAEELAELGVKRVSY 218 (238)
T ss_dssp T---TSSSHHHHHHHHHHH----S-SEEEEETT--SSS--S-HHHHHHTTESEEEE
T ss_pred C---CCCCHHHHHHHHHhc----C-CCEEEEcC--CCC--CCHHHHHHCCCcEEEE
Confidence 5 446777777666666 2 35666664 333 4444555789988843
No 205
>PRK09234 fbiC FO synthase; Reviewed
Probab=94.78 E-value=4.3 Score=46.60 Aligned_cols=226 Identities=12% Similarity=0.045 Sum_probs=131.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--------cccc---cCHHHHHHHhHhcC---CCc--EEEEeCChh
Q 014369 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKW--------VPQL---ADARDVMEAVRDLE---GAR--LPVLTPNLK 205 (426)
Q Consensus 142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--------~p~~---~D~~~v~~~i~~~~---~~~--l~~l~~~~~ 205 (426)
...++.++.+++++...+.|+..+=+.+...|+. +..+ .+.+.+.+.++.++ +.. +..-.-+.+
T Consensus 99 ~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~gl~p~i~~G~ls~~ 178 (843)
T PRK09234 99 AAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETGLLPHLNPGVMSWS 178 (843)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhcCCCceeeeCCCCHH
Confidence 4578999999999999999999977766544431 1110 12344455554332 111 111123566
Q ss_pred hHHHHHHcCCCEEEEeccC-ChHH-Hhh---h---cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHH
Q 014369 206 GFEAAIAAGAKEVAIFASA-SEAF-SKS---N---INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS 277 (426)
Q Consensus 206 di~~a~~~Gv~~V~i~~~~-Sd~~-~~~---~---~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~ 277 (426)
.++...++|++ ..+..-. ++.+ .+. . .+++.+ ++ .++++.|+++|+++...+++ |- +. +++
T Consensus 179 E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~---~R-L~ti~~A~~lGi~~tsG~L~--Gi---GE-t~e 247 (843)
T PRK09234 179 ELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPA---VR-LRVLEDAGRLSVPFTTGILI--GI---GE-TLA 247 (843)
T ss_pred HHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHH---HH-HHHHHHHHHcCCCccceEEE--EC---CC-CHH
Confidence 78888888876 3333322 2322 111 1 122333 24 48899999999998877774 42 22 345
Q ss_pred HHHHHHHHHHhC-----CCCEEEE------cCCC----CCCCHHHHHHHHHHHHHhcCCceEEEEeC-CCcCcHHHHHHH
Q 014369 278 KVAYVAKELHDM-----GCFEISL------GDTI----GVGTPGTVVPMLEAVMAVVPVEKLAVHLH-DTYGQSLPNILI 341 (426)
Q Consensus 278 ~l~~~~~~l~~~-----Gad~I~l------~DT~----G~~~P~~v~~li~~l~~~~p~~~i~~H~H-Nd~GlA~ANaLa 341 (426)
+.++.+..+.++ |+..|.+ ++|- ...+|.+..++|+..|-.+|.. +.+-.- |..|. .-+..
T Consensus 248 dRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iAvaRliL~~~-~~Iqa~~~l~g~--~~~~~ 324 (843)
T PRK09234 248 ERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIAVARLVLGPK-MRIQAPPNLVSG--DECAA 324 (843)
T ss_pred HHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCC-ceeeCccccCCH--HHHHH
Confidence 555544455444 5655543 2452 2478899999998888877532 222222 44454 34567
Q ss_pred HHHcCCCEEeecc--cCCCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369 342 SLQMGISTVDCSV--AGLGGCPYAKGASGNVATEDVVYMLSGLGVE 385 (426)
Q Consensus 342 Al~aGa~~VD~Sv--~GlGecP~a~graGNa~lEevv~~L~~lG~~ 385 (426)
++.+||+=+.+++ .+--. +|.+. .+.++++....+..|+.
T Consensus 325 ~L~~GanD~GG~~~~~~d~~---~p~~~-~~~~~~l~~~~~~aG~~ 366 (843)
T PRK09234 325 LLGAGIDDWGGVSPLTPDHV---NPERP-WPQLDELAAVTAEAGFT 366 (843)
T ss_pred HHhcCCCcccchhhhHhhcc---CccCC-CCCHHHHHHHHHHcCCC
Confidence 8999999998883 33100 01112 25789999999876654
No 206
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=94.77 E-value=2.6 Score=42.19 Aligned_cols=132 Identities=14% Similarity=0.050 Sum_probs=80.2
Q ss_pred hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHH-HhcCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369 205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA-KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 283 (426)
Q Consensus 205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~A-k~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~ 283 (426)
..++.+++.|+..+.+.+.... ....+.+.++.++.+.+.++.+ ++.|+++...++.. ...+++.+.+..
T Consensus 77 ~~~~e~~~~Gvt~~E~~~~p~~---~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~------~~~~~~~~~~~~ 147 (325)
T cd01320 77 EYLEDAAADGVVYAEIRFSPQL---HTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGL------RHLSPESAQETL 147 (325)
T ss_pred HHHHHHHHcCCEEEEEEeCchh---hccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEec------CCCCHHHHHHHH
Confidence 3456677889977666543211 1245778899998887777766 55688776544321 113456677777
Q ss_pred HHHHhCCCCEEEEcCCC---CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHH-cCCCE
Q 014369 284 KELHDMGCFEISLGDTI---GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-MGIST 349 (426)
Q Consensus 284 ~~l~~~Gad~I~l~DT~---G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~-aGa~~ 349 (426)
+.+.+.+.+.+.=.|.. ....++.+..+++..++. +.++.+|+..+.+ ..+...|++ +|+++
T Consensus 148 ~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~--g~~v~~H~~E~~~--~~~~~~a~~~~g~~~ 213 (325)
T cd01320 148 ELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREA--GLRLTAHAGEAGG--PESVRDALDLLGAER 213 (325)
T ss_pred HHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHC--CCceEEeCCCCCC--HHHHHHHHHHcCCcc
Confidence 66666554433222322 234677888888777664 3468888876643 334556776 78764
No 207
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=94.74 E-value=2.1 Score=40.63 Aligned_cols=180 Identities=14% Similarity=0.117 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEE--EeCChhhHHHHHHcCCCEEEEeccC
Q 014369 147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIFASA 224 (426)
Q Consensus 147 ~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~~di~~a~~~Gv~~V~i~~~~ 224 (426)
..+-+++++.+.+.|++.+-+--...- ........++.+.+++.-+.++.+ -++..++++.+++.|++.|.+-...
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~--~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~ 105 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGA--KGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAA 105 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCcc--ccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchH
Confidence 346689999999999998888521110 000011234444444322344444 2367889999999999988654221
Q ss_pred ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecCC--CCC-CCCHHHHHHHHHHHHhCCCCEEEEcCC-
Q 014369 225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCP--VEG-AIPPSKVAYVAKELHDMGCFEISLGDT- 299 (426)
Q Consensus 225 Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~p--d~~-r~~~~~l~~~~~~l~~~Gad~I~l~DT- 299 (426)
. +..+.+.++ +++.|. .+.+.+-.-.+.. ... ..+...+.++++.+.+.|++.|.+-|.
T Consensus 106 ---l----------~dp~~~~~i---~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~ 169 (234)
T cd04732 106 ---V----------KNPELVKEL---LKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDIS 169 (234)
T ss_pred ---H----------hChHHHHHH---HHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeec
Confidence 0 112222333 334443 3333322100000 000 012234557788889999999988775
Q ss_pred -CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHH-HHHHHHHcCCCEE
Q 014369 300 -IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP-NILISLQMGISTV 350 (426)
Q Consensus 300 -~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~A-NaLaAl~aGa~~V 350 (426)
.|.... .-.++++.+++..+. |+..-+ |.... -...++..||+.|
T Consensus 170 ~~g~~~g-~~~~~i~~i~~~~~i-pvi~~G----Gi~~~~di~~~~~~Ga~gv 216 (234)
T cd04732 170 RDGTLSG-PNFELYKELAAATGI-PVIASG----GVSSLDDIKALKELGVAGV 216 (234)
T ss_pred CCCccCC-CCHHHHHHHHHhcCC-CEEEec----CCCCHHHHHHHHHCCCCEE
Confidence 455444 225677888776653 455433 22222 2455566788865
No 208
>PRK06852 aldolase; Validated
Probab=94.73 E-value=0.54 Score=47.53 Aligned_cols=131 Identities=15% Similarity=0.039 Sum_probs=88.2
Q ss_pred hHHHHHHcC------CCEE--EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHH
Q 014369 206 GFEAAIAAG------AKEV--AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS 277 (426)
Q Consensus 206 di~~a~~~G------v~~V--~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~ 277 (426)
.++.|++.| ++-| ++++. |+. -.+.|+++.++++.|+++|+.+.+ .++..|.......+|+
T Consensus 120 sVeeAvrlG~~~~~~AdAV~v~v~~G-s~~---------E~~ml~~l~~v~~ea~~~GlPll~-~~yprG~~i~~~~~~~ 188 (304)
T PRK06852 120 DVEQVVEFKENSGLNILGVGYTIYLG-SEY---------ESEMLSEAAQIIYEAHKHGLIAVL-WIYPRGKAVKDEKDPH 188 (304)
T ss_pred cHHHHHhcCCccCCCceEEEEEEecC-CHH---------HHHHHHHHHHHHHHHHHhCCcEEE-EeeccCcccCCCccHH
Confidence 478899988 6544 44443 331 247899999999999999999764 4555554434446889
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCC--CCCCHHHHHHHHHHHHHhcCCceEEEEeC-C-CcCcHHHHHHHHHH-cCCCEEe
Q 014369 278 KVAYVAKELHDMGCFEISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLH-D-TYGQSLPNILISLQ-MGISTVD 351 (426)
Q Consensus 278 ~l~~~~~~l~~~Gad~I~l~DT~--G~~~P~~v~~li~~l~~~~p~~~i~~H~H-N-d~GlA~ANaLaAl~-aGa~~VD 351 (426)
.++..++...++|||.|-..=|. |-..|+.+.+.++.. -|. ++-+=+= - +.--.+..+-.|++ +|+..|.
T Consensus 189 ~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~---g~v-pVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~ 263 (304)
T PRK06852 189 LIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAA---GRT-KVVCAGGSSTDPEEFLKQLYEQIHISGASGNA 263 (304)
T ss_pred HHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhC---CCC-cEEEeCCCCCCHHHHHHHHHHHHHHcCCceee
Confidence 99999999999999998877652 224678888766542 132 3333221 1 11225777778888 9998764
No 209
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.73 E-value=3.9 Score=40.28 Aligned_cols=82 Identities=18% Similarity=0.117 Sum_probs=49.2
Q ss_pred HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~ 285 (426)
++.+.+.|++.|.+-++.-.. +.+.+..+..+.+.++++.+|+. ++.+.+-+.. -.+++++.++++.
T Consensus 117 a~~~~~~G~d~ielN~~cP~~----~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~--------~~~~~~~~~~a~~ 184 (289)
T cd02810 117 ARKIERAGAKALELNLSCPNV----GGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP--------YFDLEDIVELAKA 184 (289)
T ss_pred HHHHHHhCCCEEEEEcCCCCC----CCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC--------CCCHHHHHHHHHH
Confidence 455667799988876543221 11111111223444555555554 5555543331 2456788999999
Q ss_pred HHhCCCCEEEEcCCC
Q 014369 286 LHDMGCFEISLGDTI 300 (426)
Q Consensus 286 l~~~Gad~I~l~DT~ 300 (426)
+.++|+|.|.+..|.
T Consensus 185 l~~~Gad~i~~~~~~ 199 (289)
T cd02810 185 AERAGADGLTAINTI 199 (289)
T ss_pred HHHcCCCEEEEEccc
Confidence 999999999987664
No 210
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.73 E-value=0.69 Score=47.10 Aligned_cols=135 Identities=16% Similarity=0.140 Sum_probs=86.4
Q ss_pred HHHHHcCCCEEEEecc--------CChHH--HhhhcCCCHHHHHHHHHHHHHHHHhc-C--CcEEEEEEeeecCCCCCCC
Q 014369 208 EAAIAAGAKEVAIFAS--------ASEAF--SKSNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVGCPVEGAI 274 (426)
Q Consensus 208 ~~a~~~Gv~~V~i~~~--------~Sd~~--~~~~~~~s~~e~l~~~~~~v~~Ak~~-G--~~v~~~v~~~fg~pd~~r~ 274 (426)
++|.++|.|.|.|... +|+.. +...+|-|.++=.....++++.+|+. | +.|.+-++..-..+ .-.
T Consensus 156 ~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~--~g~ 233 (338)
T cd04733 156 RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQR--GGF 233 (338)
T ss_pred HHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCC--CCC
Confidence 4667899999988654 35553 33457888888888888888888875 4 45555444211111 225
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCC---------------HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHH
Q 014369 275 PPSKVAYVAKELHDMGCFEISLGDTIGVGT---------------PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNI 339 (426)
Q Consensus 275 ~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~---------------P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANa 339 (426)
+++...++++.+.++|+|.|.+.. |... +....++.+.++++++..-+..-..+ ....+
T Consensus 234 ~~eea~~ia~~Le~~Gvd~iev~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~----t~~~a 307 (338)
T cd04733 234 TEEDALEVVEALEEAGVDLVELSG--GTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFR----TRAAM 307 (338)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecC--CCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCC----CHHHH
Confidence 788899999999999999998643 2110 11124667788887753223333222 34677
Q ss_pred HHHHHcC-CCEE
Q 014369 340 LISLQMG-ISTV 350 (426)
Q Consensus 340 LaAl~aG-a~~V 350 (426)
..+++.| ||.|
T Consensus 308 ~~~l~~g~aD~V 319 (338)
T cd04733 308 EQALASGAVDGI 319 (338)
T ss_pred HHHHHcCCCCee
Confidence 8888887 6765
No 211
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=94.73 E-value=0.62 Score=46.68 Aligned_cols=107 Identities=9% Similarity=0.021 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCC--------------
Q 014369 235 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI-------------- 300 (426)
Q Consensus 235 ~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~-------------- 300 (426)
.+.++.++.++.++... .++|.+. .+.+ -++..+.+.++.+.++|+..|.|-|.+
T Consensus 61 ~~~~e~~~~~~~I~~a~---~~Pv~~D-------~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~ 129 (285)
T TIGR02320 61 ASWTQRLDVVEFMFDVT---TKPIILD-------GDTG-GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQ 129 (285)
T ss_pred CCHHHHHHHHHHHHhhc---CCCEEEe-------cCCC-CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcc
Confidence 36778888776665443 5666532 2455 689999999999999999999999975
Q ss_pred CCCCHHHHHHHHHHHHHh-c-CCceEEEE----e-CCCcCcHHHHHHHHHHcCCCEEee
Q 014369 301 GVGTPGTVVPMLEAVMAV-V-PVEKLAVH----L-HDTYGQSLPNILISLQMGISTVDC 352 (426)
Q Consensus 301 G~~~P~~v~~li~~l~~~-~-p~~~i~~H----~-HNd~GlA~ANaLaAl~aGa~~VD~ 352 (426)
.+..+++..+.|++.++. . ++..|-.. . ...+--++.-+.++.++|||.|=.
T Consensus 130 ~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv 188 (285)
T TIGR02320 130 PQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMI 188 (285)
T ss_pred cccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEe
Confidence 356778888888888775 2 33334344 1 123446788888999999997754
No 212
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=94.72 E-value=3.4 Score=40.45 Aligned_cols=134 Identities=22% Similarity=0.190 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCccccc--cCHHHHHHHhHhcC---CCcEEEEeCChhhHHHHHHcCCCE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQL--ADARDVMEAVRDLE---GARLPVLTPNLKGFEAAIAAGAKE 217 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~~--~D~~~v~~~i~~~~---~~~l~~l~~~~~di~~a~~~Gv~~ 217 (426)
..+.+..++.++.+.+.|.+.|++|.-++ |..-|.- ...+.+...++.+. +..++.=+.+.+-+++|++.|++.
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~g~~i 99 (258)
T cd00423 20 FLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAALKAGADI 99 (258)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHHHhCCCE
Confidence 46889999999999999999999996543 3221111 11122334444332 444544457788899999999765
Q ss_pred EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC------CCCC----HHHHHHHHHHHH
Q 014369 218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------GAIP----PSKVAYVAKELH 287 (426)
Q Consensus 218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~------~r~~----~~~l~~~~~~l~ 287 (426)
|.=.-... .+ .++++.++++|..+. ++..-+.|.. .... .+++.+.++.+.
T Consensus 100 INdis~~~---------------~~--~~~~~l~~~~~~~vV--~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 160 (258)
T cd00423 100 INDVSGGR---------------GD--PEMAPLAAEYGAPVV--LMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAAT 160 (258)
T ss_pred EEeCCCCC---------------CC--hHHHHHHHHcCCCEE--EECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHH
Confidence 44321110 00 345567778887765 3332111110 0001 367777788888
Q ss_pred hCCC--CEEEE
Q 014369 288 DMGC--FEISL 296 (426)
Q Consensus 288 ~~Ga--d~I~l 296 (426)
++|+ +.|.+
T Consensus 161 ~~Gi~~~~Iil 171 (258)
T cd00423 161 EAGIPPEDIIL 171 (258)
T ss_pred HcCCCHHHEEE
Confidence 9995 35544
No 213
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=94.69 E-value=1.7 Score=38.55 Aligned_cols=133 Identities=12% Similarity=0.117 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-CCCcEEEEeC----ChhhHHHHHHcCCCEEEEec
Q 014369 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTP----NLKGFEAAIAAGAKEVAIFA 222 (426)
Q Consensus 148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~l~~----~~~di~~a~~~Gv~~V~i~~ 222 (426)
++..+++......|+..+-++.. .|-..| ...++++.++.. ++..+...+. +.+.++...++|+..|.+.+
T Consensus 31 ~~~~~~~~~~~~~~~~~i~~~gg-ep~~~~---~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~l 106 (204)
T cd01335 31 EEILDIVLEAKERGVEVVILTGG-EPLLYP---ELAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGLDGVGVSL 106 (204)
T ss_pred HHHHHHHHHHHhcCceEEEEeCC-cCCccH---hHHHHHHHHHhhCCCceEEEEcCcccCCHHHHHHHHhCCCceEEEEc
Confidence 56677777778888888777532 111011 234445555433 4666666552 35788888999999999998
Q ss_pred cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC
Q 014369 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG 290 (426)
Q Consensus 223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G 290 (426)
...+......++ .....+++..+.++.+++.|+.+.+.+. .|.+.. +.+.+.+..+.+.+.+
T Consensus 107 e~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~i--~g~~~~---~~~~~~~~~~~l~~~~ 168 (204)
T cd01335 107 DSGDEEVADKIR-GSGESFKERLEALKELREAGLGLSTTLL--VGLGDE---DEEDDLEELELLAEFR 168 (204)
T ss_pred ccCCHHHHHHHh-cCCcCHHHHHHHHHHHHHcCCCceEEEE--EecCCC---hhHHHHHHHHHHHhhc
Confidence 655544444332 1122345566777788888998886666 444433 2466667777777665
No 214
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=94.67 E-value=1.4 Score=46.75 Aligned_cols=110 Identities=14% Similarity=0.087 Sum_probs=74.5
Q ss_pred HHHHHHHhHhc----CCCcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 014369 182 ARDVMEAVRDL----EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV 253 (426)
Q Consensus 182 ~~~v~~~i~~~----~~~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~ 253 (426)
..++++.+++. ++..+.+-+ | +.+.++...++|+.+|.|.+..-+......+|+. ...+.+.++++.+++
T Consensus 122 l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~--~~~~~~~~ai~~lr~ 199 (453)
T PRK13347 122 FERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRI--QPEEMVARAVELLRA 199 (453)
T ss_pred HHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCC--CCHHHHHHHHHHHHh
Confidence 34555555432 345555544 3 3467888889999999998754443344445553 234556678889999
Q ss_pred cCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 014369 254 LSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD 298 (426)
Q Consensus 254 ~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~D 298 (426)
.|+. |.+.++ +|.|.. +.+.+.+.++.+.++|++.|.+-.
T Consensus 200 ~G~~~v~~dli--~GlPgq---t~e~~~~tl~~~~~l~p~~i~~y~ 240 (453)
T PRK13347 200 AGFESINFDLI--YGLPHQ---TVESFRETLDKVIALSPDRIAVFG 240 (453)
T ss_pred cCCCcEEEeEE--EeCCCC---CHHHHHHHHHHHHhcCCCEEEEec
Confidence 9986 666666 666754 578888889999999999887754
No 215
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.67 E-value=0.69 Score=45.94 Aligned_cols=102 Identities=20% Similarity=0.219 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----------cCCCCCCCHH
Q 014369 237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----------GDTIGVGTPG 306 (426)
Q Consensus 237 ~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----------~DT~G~~~P~ 306 (426)
.++.++++.+. .++.+.++.++|.. .+++.+.+.++.+.++|+|.|.| .+..| ..|.
T Consensus 74 ~~~~~~~~~~~---~~~~~~p~ivsi~g---------~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~-~~~~ 140 (296)
T cd04740 74 VEAFLEELLPW---LREFGTPVIASIAG---------STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG-TDPE 140 (296)
T ss_pred HHHHHHHHHHH---hhcCCCcEEEEEec---------CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc-CCHH
Confidence 34555554442 23346666665542 35788999999999999998877 23333 4789
Q ss_pred HHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369 307 TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 352 (426)
Q Consensus 307 ~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~ 352 (426)
.+.++++++++.+. .+|.+-.--+..-...-+..+.++|++.|+.
T Consensus 141 ~~~eiv~~vr~~~~-~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 141 AVAEIVKAVKKATD-VPVIVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred HHHHHHHHHHhccC-CCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 99999999999863 4677766544433444556678899998754
No 216
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=94.65 E-value=1.2 Score=41.49 Aligned_cols=154 Identities=19% Similarity=0.159 Sum_probs=83.8
Q ss_pred HHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcC----CCcEEEEeCChhhHHHHHHcCCCEEEEeccCC
Q 014369 150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE----GARLPVLTPNLKGFEAAIAAGAKEVAIFASAS 225 (426)
Q Consensus 150 ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~----~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~S 225 (426)
-.+.++.+.+.|++.|++-.... +..+..+.++.+. +..+..++. ..++.+.+.|++.|++.....
T Consensus 23 ~~~~~~~~~~~gv~~v~lr~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~a~~~gad~vh~~~~~~ 92 (212)
T PRK00043 23 LLEVVEAALEGGVTLVQLREKGL--------DTRERLELARALKELCRRYGVPLIVN--DRVDLALAVGADGVHLGQDDL 92 (212)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCC--------CHHHHHHHHHHHHHHHHHhCCeEEEe--ChHHHHHHcCCCEEecCcccC
Confidence 35677888889999999975421 1223333333221 112222332 568899999999988843210
Q ss_pred hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc---CCC-C
Q 014369 226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG---DTI-G 301 (426)
Q Consensus 226 d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~---DT~-G 301 (426)
+ ...++..+..+..+. ++ + .+++. +..+.+.|+|.|.+. +|. .
T Consensus 93 ~------------------~~~~~~~~~~~~~~g--~~----~-----~t~~e----~~~a~~~gaD~v~~~~~~~~~~~ 139 (212)
T PRK00043 93 P------------------VADARALLGPDAIIG--LS----T-----HTLEE----AAAALAAGADYVGVGPIFPTPTK 139 (212)
T ss_pred C------------------HHHHHHHcCCCCEEE--Ee----C-----CCHHH----HHHHhHcCCCEEEECCccCCCCC
Confidence 0 122233445555444 22 1 13333 334457899999763 221 1
Q ss_pred CCC-HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 302 VGT-PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 302 ~~~-P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
... |..-.+.++.+++.++..+|.+-+ |....|+-.++.+||+.|
T Consensus 140 ~~~~~~~g~~~~~~~~~~~~~~~v~a~G----GI~~~~i~~~~~~Ga~gv 185 (212)
T PRK00043 140 KDAKAPQGLEGLREIRAAVGDIPIVAIG----GITPENAPEVLEAGADGV 185 (212)
T ss_pred CCCCCCCCHHHHHHHHHhcCCCCEEEEC----CcCHHHHHHHHHcCCCEE
Confidence 111 111134455555555433455543 666689999999999987
No 217
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=94.60 E-value=3 Score=41.37 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc-cCHHHHHHHhHhcCCC-cEEEEeCC---hhhHHHHHHcCCCEE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGA-RLPVLTPN---LKGFEAAIAAGAKEV 218 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~~~~-~l~~l~~~---~~di~~a~~~Gv~~V 218 (426)
.++.++..++++.+.+.|++.|-++. .. |-+ .+..++++.++.. +. .+...+.. .+.++...++|++.|
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~tG-GE----Pll~~~l~~iv~~l~~~-g~~~v~i~TNG~ll~~~~~~l~~~g~~~v 112 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKITG-GE----PLLRKDLIEIIRRIKDY-GIKDVSMTTNGILLEKLAKKLKEAGLDRV 112 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEC-cc----cccccCHHHHHHHHHhC-CCceEEEEcCchHHHHHHHHHHHCCCCEE
Confidence 57889988999999999999887743 12 211 2344555555543 33 34333322 234566678899999
Q ss_pred EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF 292 (426)
Q Consensus 219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad 292 (426)
.|.+...+......++. ...++++.+.++.+++.|+. +.+++... + + .+.+.+.++++.+.+.|++
T Consensus 113 ~iSld~~~~~~~~~i~~--~~~~~~vl~~i~~~~~~G~~~v~i~~v~~---~--g-~n~~ei~~~~~~~~~~g~~ 179 (302)
T TIGR02668 113 NVSLDTLDPEKYKKITG--RGALDRVIEGIESAVDAGLTPVKLNMVVL---K--G-INDNEIPDMVEFAAEGGAI 179 (302)
T ss_pred EEEecCCCHHHhhhccC--CCcHHHHHHHHHHHHHcCCCcEEEEEEEe---C--C-CCHHHHHHHHHHHHhcCCE
Confidence 98765432211112222 34577777888889999986 66544321 2 1 3567788889888899986
No 218
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.58 E-value=1.5 Score=43.94 Aligned_cols=138 Identities=17% Similarity=0.081 Sum_probs=85.8
Q ss_pred HHHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc---CCcEEEEEEeeecCCCCCC
Q 014369 207 FEAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGA 273 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~---G~~v~~~v~~~fg~pd~~r 273 (426)
.++|.++|.|.|.|...- |+. ++...+|-+.++-.+.+.++++.+|+. ++.+.+-++.... ..+.
T Consensus 147 A~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~--~~~g 224 (327)
T cd02803 147 ARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDF--VPGG 224 (327)
T ss_pred HHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhcc--CCCC
Confidence 456778999988886542 221 333446777777777777888888774 3445544442211 1123
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC----------HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHH
Q 014369 274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGT----------PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL 343 (426)
Q Consensus 274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~----------P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl 343 (426)
.+++...++++.+.++|+|.|.+......-. +....++++.+++.++. +|..-.--+ ....+..++
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~i-PVi~~Ggi~---t~~~a~~~l 300 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKI-PVIAVGGIR---DPEVAEEIL 300 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCC-CEEEeCCCC---CHHHHHHHH
Confidence 5788999999999999999998765432211 13334677788887753 444432211 246677778
Q ss_pred Hc-CCCEE
Q 014369 344 QM-GISTV 350 (426)
Q Consensus 344 ~a-Ga~~V 350 (426)
+. |||.|
T Consensus 301 ~~g~aD~V 308 (327)
T cd02803 301 AEGKADLV 308 (327)
T ss_pred HCCCCCee
Confidence 87 67766
No 219
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=94.56 E-value=3 Score=39.29 Aligned_cols=141 Identities=23% Similarity=0.209 Sum_probs=82.3
Q ss_pred HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l 286 (426)
++.+.+.+++-|-+. + ..++.+. +..+..++.+.+. .+.|... .+.+....-++.+
T Consensus 23 ~~~a~~~~~~av~v~----p------------~~v~~~~---~~l~~~~~~v~~~----~~fp~g~-~~~~~k~~eve~A 78 (203)
T cd00959 23 CDEAKEYGFAAVCVN----P------------CFVPLAR---EALKGSGVKVCTV----IGFPLGA-TTTEVKVAEAREA 78 (203)
T ss_pred HHHHHHcCCCEEEEc----H------------HHHHHHH---HHcCCCCcEEEEE----EecCCCC-CcHHHHHHHHHHH
Confidence 346666788877764 2 1233222 2333344444433 3446554 4455555557888
Q ss_pred HhCCCCEEEEcCCCCCCC---HHHHHHHHHHHHHhcCCceEEEEeCCCcCcH----HHHHHHHHHcCCCEEeecccCCCC
Q 014369 287 HDMGCFEISLGDTIGVGT---PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS----LPNILISLQMGISTVDCSVAGLGG 359 (426)
Q Consensus 287 ~~~Gad~I~l~DT~G~~~---P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA----~ANaLaAl~aGa~~VD~Sv~GlGe 359 (426)
.++|||.|.+.=-.|... -..+.+-+..+++...+.++-+ ...+-.+- .--+..|+++|||+|=++ .|.+
T Consensus 79 ~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkv-I~e~~~l~~~~i~~a~ria~e~GaD~IKTs-TG~~- 155 (203)
T cd00959 79 IADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKV-ILETGLLTDEEIIKACEIAIEAGADFIKTS-TGFG- 155 (203)
T ss_pred HHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEE-EEecCCCCHHHHHHHHHHHHHhCCCEEEcC-CCCC-
Confidence 889999998877777543 3557777777777654333322 22222221 233567899999999998 5543
Q ss_pred CCCCCCCCCcccHHHHHHHHHh
Q 014369 360 CPYAKGASGNVATEDVVYMLSG 381 (426)
Q Consensus 360 cP~a~graGNa~lEevv~~L~~ 381 (426)
++++.+|++-.+.+.
T Consensus 156 -------~~~at~~~v~~~~~~ 170 (203)
T cd00959 156 -------PGGATVEDVKLMKEA 170 (203)
T ss_pred -------CCCCCHHHHHHHHHH
Confidence 345777776655543
No 220
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=94.53 E-value=6.5 Score=41.80 Aligned_cols=169 Identities=17% Similarity=0.200 Sum_probs=99.9
Q ss_pred CCCHHHHHHHHHHHHhC--CCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeCC---hhhHHHHHHcCCCE
Q 014369 144 TVPTGVKVELIRRLVSS--GLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPN---LKGFEAAIAAGAKE 217 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~--Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~~---~~di~~a~~~Gv~~ 217 (426)
.++.++.++.+..+.+. ++..|=+..+..|-. +.....+.++.++ ..++..+..-+-. .+.++..++.|++.
T Consensus 59 ~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl--~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~ 136 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLA--NIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGH 136 (442)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEEecCCCccc--CccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCe
Confidence 57899999988887654 455544433222211 1111123444444 3467766544432 46688888999999
Q ss_pred EEEeccCCh--HHHhh---------hc-CCCHHH-HHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369 218 VAIFASASE--AFSKS---------NI-NCSIED-SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (426)
Q Consensus 218 V~i~~~~Sd--~~~~~---------~~-~~s~~e-~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~ 284 (426)
|.+.+...+ .|.+. .+ |.+... .+++..+.++++++.|+.+.++.... | + ...+.+.++++
T Consensus 137 V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlI---p--G-iND~~i~~l~~ 210 (442)
T TIGR01290 137 VTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLI---P--G-INDEHLVEVSK 210 (442)
T ss_pred EEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEee---C--C-cCHHHHHHHHH
Confidence 988876543 44321 11 222233 25667778888889999877654432 2 2 23478999999
Q ss_pred HHHhCCCCEEEE------c--CCC------CCCCHHHHHHHHHHHHHhcC
Q 014369 285 ELHDMGCFEISL------G--DTI------GVGTPGTVVPMLEAVMAVVP 320 (426)
Q Consensus 285 ~l~~~Gad~I~l------~--DT~------G~~~P~~v~~li~~l~~~~p 320 (426)
.+.+.|++.+.| + ++. -..+++++.++-+.+...+|
T Consensus 211 ~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~~~~~~~ 260 (442)
T TIGR01290 211 QVKELGAFLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDRLEMGTP 260 (442)
T ss_pred HHHhCCCcEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHHHHhhhh
Confidence 999999887766 2 221 12355666666665555444
No 221
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=94.48 E-value=1.2 Score=45.65 Aligned_cols=136 Identities=21% Similarity=0.153 Sum_probs=86.1
Q ss_pred HHHHHHcCCCEEEEecc--------CChHH--HhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCC
Q 014369 207 FEAAIAAGAKEVAIFAS--------ASEAF--SKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIP 275 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~--------~Sd~~--~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~ 275 (426)
.++|.++|.|.|.|... +|+.. +...+|-|.++=...+.++++.+|+. ++.|.+-++..-..+ +-.+
T Consensus 148 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~--~G~~ 225 (337)
T PRK13523 148 AVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHP--GGLT 225 (337)
T ss_pred HHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC--CCCC
Confidence 35667899999888754 24433 34456777877777777777777765 455554454321111 1246
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCC-------CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-C
Q 014369 276 PSKVAYVAKELHDMGCFEISLGDTIGVG-------TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-I 347 (426)
Q Consensus 276 ~~~l~~~~~~l~~~Gad~I~l~DT~G~~-------~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a 347 (426)
+++..++++.+.+.|+|.|.+. .|.. .|.....+.+.+++.+...-+.+..-++ ...+..+++.| +
T Consensus 226 ~~e~~~i~~~l~~~gvD~i~vs--~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~----~~~a~~~l~~g~~ 299 (337)
T PRK13523 226 VQDYVQYAKWMKEQGVDLIDVS--SGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITS----GAQAEEILQNNRA 299 (337)
T ss_pred HHHHHHHHHHHHHcCCCEEEeC--CCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCC----HHHHHHHHHcCCC
Confidence 8999999999999999999883 3331 1222346677788876542244444344 35677788887 7
Q ss_pred CEE
Q 014369 348 STV 350 (426)
Q Consensus 348 ~~V 350 (426)
|.|
T Consensus 300 D~V 302 (337)
T PRK13523 300 DLI 302 (337)
T ss_pred ChH
Confidence 765
No 222
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=94.45 E-value=1.9 Score=41.98 Aligned_cols=188 Identities=19% Similarity=0.226 Sum_probs=109.8
Q ss_pred HHHHHHhCCCCeEEEecCC--CCCcccc--ccCHHHHHHHhHhcC-CCcEEEEe--C----C----hhhHHHHHHcCCCE
Q 014369 153 LIRRLVSSGLPVVEATSFV--SPKWVPQ--LADARDVMEAVRDLE-GARLPVLT--P----N----LKGFEAAIAAGAKE 217 (426)
Q Consensus 153 I~~~L~~~Gv~~IEvG~~~--s~~~~p~--~~D~~~v~~~i~~~~-~~~l~~l~--~----~----~~di~~a~~~Gv~~ 217 (426)
-++.+.++|++.|=+|... ...+.|. +.+.+++...++.+- .+.+.+.+ + + .+.+++..+.|+.-
T Consensus 21 sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~g 100 (243)
T cd00377 21 SARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAG 100 (243)
T ss_pred HHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 4667788899999998542 1123443 245677777777542 23333333 2 2 23466777899999
Q ss_pred EEEeccCChHHH---hhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 014369 218 VAIFASASEAFS---KSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE 293 (426)
Q Consensus 218 V~i~~~~Sd~~~---~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~ 293 (426)
|.|-....+... ..+.-.+.++..++++.+++.+++. .+.|.+.. .++ ..+....++..+-+++..++|||.
T Consensus 101 v~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiART-Da~---~~~~~~~~eai~Ra~ay~~AGAD~ 176 (243)
T cd00377 101 IHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIART-DAL---LAGEEGLDEAIERAKAYAEAGADG 176 (243)
T ss_pred EEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEc-Cch---hccCCCHHHHHHHHHHHHHcCCCE
Confidence 999665443211 1112348899999988777777664 22222110 001 011145788888999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 014369 294 ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV 354 (426)
Q Consensus 294 I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv 354 (426)
|.+. |..+++++..+.+. .+ .|+-+....... .-+.-.--+.|+++|-...
T Consensus 177 v~v~---~~~~~~~~~~~~~~----~~-~Pl~~~~~~~~~--~~~~~~l~~lG~~~v~~~~ 227 (243)
T cd00377 177 IFVE---GLKDPEEIRAFAEA----PD-VPLNVNMTPGGN--LLTVAELAELGVRRVSYGL 227 (243)
T ss_pred EEeC---CCCCHHHHHHHHhc----CC-CCEEEEecCCCC--CCCHHHHHHCCCeEEEECh
Confidence 9985 33366666555444 44 366666544432 1123333466888875443
No 223
>PRK14057 epimerase; Provisional
Probab=94.45 E-value=1.2 Score=43.97 Aligned_cols=172 Identities=12% Similarity=0.133 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCC-hhhHHHHHHcCCCEEEEecc
Q 014369 149 VKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPN-LKGFEAAIAAGAKEVAIFAS 223 (426)
Q Consensus 149 ~ki~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~-~~di~~a~~~Gv~~V~i~~~ 223 (426)
.-.+-++.|.+.|++.+=+ |.|+ |++.=..++++.++......+-.++.+ ..-++..+++|++.|-+..-
T Consensus 33 ~L~~el~~l~~~g~d~lHiDVMDG~FV-----PNitfGp~~i~~i~~~~p~DvHLMV~~P~~~i~~~~~aGad~It~H~E 107 (254)
T PRK14057 33 ALHRYLQQLEALNQPLLHLDLMDGQFC-----PQFTVGPWAVGQLPQTFIKDVHLMVADQWTAAQACVKAGAHCITLQAE 107 (254)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCccC-----CccccCHHHHHHhccCCCeeEEeeeCCHHHHHHHHHHhCCCEEEEeec
Confidence 3345677888899997655 5554 444333455556654111233445555 45678889999998887643
Q ss_pred CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-------EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369 224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-------VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (426)
Q Consensus 224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-------v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l 296 (426)
+ .....++++++|++|++ +.+-|. + +|. ++++.+.++... +|.|-+
T Consensus 108 a----------------~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlA--l-nP~---Tp~e~i~~~l~~-----vD~VLv 160 (254)
T PRK14057 108 G----------------DIHLHHTLSWLGQQTVPVIGGEMPVIRGIS--L-CPA---TPLDVIIPILSD-----VEVIQL 160 (254)
T ss_pred c----------------ccCHHHHHHHHHHcCCCcccccccceeEEE--E-CCC---CCHHHHHHHHHh-----CCEEEE
Confidence 2 22345677888888874 222233 2 232 567777766642 343332
Q ss_pred ----cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369 297 ----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 352 (426)
Q Consensus 297 ----~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~ 352 (426)
+.-.|...-..+.+-|+.+++..+...+.+-.-=|=|....|+-...++||+++=+
T Consensus 161 MtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~ 220 (254)
T PRK14057 161 LAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVS 220 (254)
T ss_pred EEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEE
Confidence 34445555555666666666654321122223336688888999999999997633
No 224
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=94.43 E-value=4.1 Score=37.70 Aligned_cols=172 Identities=19% Similarity=0.183 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcE--EEEeCC-hhhHHHHHHcCCCEEEEe
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARL--PVLTPN-LKGFEAAIAAGAKEVAIF 221 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l--~~l~~~-~~di~~a~~~Gv~~V~i~ 221 (426)
++...-.+.++.+.++|++.|+++.--.+ ..|...-..+..+.++...+..+ ..++.+ .+.++.+.++|++.|.+.
T Consensus 9 ~d~~~~~~~~~~~~~~G~~~i~l~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh 87 (211)
T cd00429 9 ADFANLGEELKRLEEAGADWIHIDVMDGH-FVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFH 87 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCC-CCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEC
Confidence 44555567889999999999999632110 11211111233444543222333 233444 345888899999998776
Q ss_pred ccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc----
Q 014369 222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG---- 297 (426)
Q Consensus 222 ~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~---- 297 (426)
...++ ...+.++.+++.|+.+...+. +. ++.+.+.++. + ++|.|.+.
T Consensus 88 ~~~~~----------------~~~~~~~~~~~~~~~~g~~~~-----~~---~~~~~~~~~~----~-~~d~i~~~~~~~ 138 (211)
T cd00429 88 AEATD----------------HLHRTIQLIKELGMKAGVALN-----PG---TPVEVLEPYL----D-EVDLVLVMSVNP 138 (211)
T ss_pred ccchh----------------hHHHHHHHHHHCCCeEEEEec-----CC---CCHHHHHHHH----h-hCCEEEEEEECC
Confidence 43322 223557778888887763221 11 2233333332 2 25666442
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcC----CceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 298 DTIGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 298 DT~G~~~P~~v~~li~~l~~~~p----~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
-+.|...+....+.++.+++..+ ..++.+= -|....|+-.++++|++.|
T Consensus 139 g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~----GGI~~env~~~~~~gad~i 191 (211)
T cd00429 139 GFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVD----GGINLETIPLLAEAGADVL 191 (211)
T ss_pred CCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEE----CCCCHHHHHHHHHcCCCEE
Confidence 22343445566667777776653 2345443 3788899999999999976
No 225
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.40 E-value=4 Score=40.51 Aligned_cols=126 Identities=20% Similarity=0.215 Sum_probs=71.1
Q ss_pred HHHHHcCCCEEEEeccCChHHHh--hhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369 208 EAAIAAGAKEVAIFASASEAFSK--SNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (426)
Q Consensus 208 ~~a~~~Gv~~V~i~~~~Sd~~~~--~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~ 284 (426)
+++.++|+|.|-+-++.-. ... ..++.+ .+.+.++++.+|+. ++.|.+-+. | +.+.+.++++
T Consensus 109 ~~~~~~G~d~iElN~~cP~-~~~~g~~~~~~----~~~~~eiv~~vr~~~~~Pv~vKl~-----~-----~~~~~~~~a~ 173 (296)
T cd04740 109 EKLADAGADAIELNISCPN-VKGGGMAFGTD----PEAVAEIVKAVKKATDVPVIVKLT-----P-----NVTDIVEIAR 173 (296)
T ss_pred HHHHHcCCCEEEEECCCCC-CCCCcccccCC----HHHHHHHHHHHHhccCCCEEEEeC-----C-----CchhHHHHHH
Confidence 4455679998777654211 110 112223 34555666677766 677664432 2 2246778899
Q ss_pred HHHhCCCCEEEEcCCCCCCC-------------------H---HHHHHHHHHHHHhcCCceEEEEeCCCcCc-HHHHHHH
Q 014369 285 ELHDMGCFEISLGDTIGVGT-------------------P---GTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILI 341 (426)
Q Consensus 285 ~l~~~Gad~I~l~DT~G~~~-------------------P---~~v~~li~~l~~~~p~~~i~~H~HNd~Gl-A~ANaLa 341 (426)
.+.++|+|.|.+-+|.+... | ....++++.+++.++. +|.. .=|. -...+..
T Consensus 174 ~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~i-pii~----~GGI~~~~da~~ 248 (296)
T cd04740 174 AAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEI-PIIG----VGGIASGEDALE 248 (296)
T ss_pred HHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCC-CEEE----ECCCCCHHHHHH
Confidence 99999999998876643211 0 1123566777765532 2222 1122 2367777
Q ss_pred HHHcCCCEEeec
Q 014369 342 SLQMGISTVDCS 353 (426)
Q Consensus 342 Al~aGa~~VD~S 353 (426)
++++||+.|..+
T Consensus 249 ~l~~GAd~V~ig 260 (296)
T cd04740 249 FLMAGASAVQVG 260 (296)
T ss_pred HHHcCCCEEEEc
Confidence 778888876543
No 226
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=94.40 E-value=2.3 Score=44.38 Aligned_cols=143 Identities=14% Similarity=0.191 Sum_probs=89.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEec---CC-CCCccccccCHHHHHHHhHhcCCC---cEEEEeCC---hhhHHHHHHc
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATS---FV-SPKWVPQLADARDVMEAVRDLEGA---RLPVLTPN---LKGFEAAIAA 213 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~---~~-s~~~~p~~~D~~~v~~~i~~~~~~---~l~~l~~~---~~di~~a~~~ 213 (426)
..+.+..++-++.|.+.|++.|-+.. .. ..++ +......++++.+...++. ++..+-|. .+-++...++
T Consensus 166 ~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~-~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~ 244 (414)
T TIGR01579 166 SVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDL-KNGTSLAKLLEQILQIPGIKRIRLSSIDPEDIDEELLEAIASE 244 (414)
T ss_pred cCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCC-CCCCcHHHHHHHHhcCCCCcEEEEeCCChhhCCHHHHHHHHhc
Confidence 56889989988999999999887642 11 1110 0012345666666655543 22222232 2345666666
Q ss_pred C--CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHh--cCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh
Q 014369 214 G--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKV--LSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD 288 (426)
Q Consensus 214 G--v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~--~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~ 288 (426)
| ...+++.+ +.|+.-++ .+|+.. ..+.+.++++.+++ .|+.+.++++ +|.|.. +++.+.+.++.+.+
T Consensus 245 ~~~~~~l~lglESgs~~vLk-~m~R~~--~~~~~~~~v~~l~~~~~gi~i~~~~I--vG~PgE---T~ed~~~tl~~i~~ 316 (414)
T TIGR01579 245 KRLCPHLHLSLQSGSDRVLK-RMRRKY--TRDDFLKLVNKLRSVRPDYAFGTDII--VGFPGE---SEEDFQETLRMVKE 316 (414)
T ss_pred CccCCCeEECCCcCChHHHH-hcCCCC--CHHHHHHHHHHHHHhCCCCeeeeeEE--EECCCC---CHHHHHHHHHHHHh
Confidence 6 57788876 45554443 355432 34567788888888 8888887776 677865 46777778888888
Q ss_pred CCCCEEE
Q 014369 289 MGCFEIS 295 (426)
Q Consensus 289 ~Gad~I~ 295 (426)
.+.+.+.
T Consensus 317 ~~~~~~~ 323 (414)
T TIGR01579 317 IEFSHLH 323 (414)
T ss_pred CCCCEEE
Confidence 8887665
No 227
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=94.37 E-value=0.36 Score=47.13 Aligned_cols=149 Identities=16% Similarity=0.083 Sum_probs=94.1
Q ss_pred HcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC-CCCCCCCHHHHHHHHHHHHhCC
Q 014369 212 AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC-PVEGAIPPSKVAYVAKELHDMG 290 (426)
Q Consensus 212 ~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~-pd~~r~~~~~l~~~~~~l~~~G 290 (426)
..-+|.+-+...++-.+ .++ .+++.++.|+++|+.|. +|. ..+.......+.++.+.+.++|
T Consensus 22 g~yID~lKfg~Gt~~l~--------~~~---~l~eki~la~~~~V~v~------~GGtl~E~~~~q~~~~~Yl~~~k~lG 84 (237)
T TIGR03849 22 GDYITFVKFGWGTSALI--------DRD---IVKEKIEMYKDYGIKVY------PGGTLFEIAHSKGKFDEYLNECDELG 84 (237)
T ss_pred hhheeeEEecCceEeec--------cHH---HHHHHHHHHHHcCCeEe------CCccHHHHHHHhhhHHHHHHHHHHcC
Confidence 34566666655444322 122 25688899999999876 221 1111122356667778899999
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEeCC-----CcCcHHHHHHHHHHcCCCEE--eecc----cCC
Q 014369 291 CFEISLGDTIGVGTPGTVVPMLEAVMAV-V-PVEKLAVHLHD-----TYGQSLPNILISLQMGISTV--DCSV----AGL 357 (426)
Q Consensus 291 ad~I~l~DT~G~~~P~~v~~li~~l~~~-~-p~~~i~~H~HN-----d~GlA~ANaLaAl~aGa~~V--D~Sv----~Gl 357 (426)
.+.|-|.|..--+..++-.++|+.+++. + .-..++..... +...-+-.+-..++|||+.| ++-= -|+
T Consensus 85 f~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi 164 (237)
T TIGR03849 85 FEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEGRESGKNIGL 164 (237)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEeehhcCCCcce
Confidence 9999999999999999999999999965 2 11124444331 22233445556799999954 6522 255
Q ss_pred CCCCCCCCCCCcccHHHHHHHHHhCC
Q 014369 358 GGCPYAKGASGNVATEDVVYMLSGLG 383 (426)
Q Consensus 358 GecP~a~graGNa~lEevv~~L~~lG 383 (426)
=+ ..|+.-...+...+++++
T Consensus 165 ~~------~~g~~r~d~v~~i~~~l~ 184 (237)
T TIGR03849 165 FD------EKGNVKEDELDVLAENVD 184 (237)
T ss_pred eC------CCCCCchHHHHHHHhhCC
Confidence 55 577777776655555433
No 228
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=94.34 E-value=2.2 Score=41.69 Aligned_cols=124 Identities=12% Similarity=0.150 Sum_probs=73.9
Q ss_pred ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369 203 NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 282 (426)
Q Consensus 203 ~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~ 282 (426)
..++++.+.+.|++.+-|.-. |+ .. ..+++++.+.|.+|. ++ .|..+.+++.+.
T Consensus 78 d~~s~d~l~~~~~~~~KIaS~--dl--------------~n-~~lL~~~A~tgkPvI--lS-------TG~stl~EI~~A 131 (241)
T PF03102_consen 78 DEESVDFLEELGVPAYKIASG--DL--------------TN-LPLLEYIAKTGKPVI--LS-------TGMSTLEEIERA 131 (241)
T ss_dssp SHHHHHHHHHHT-SEEEE-GG--GT--------------T--HHHHHHHHTT-S-EE--EE--------TT--HHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEeccc--cc--------------cC-HHHHHHHHHhCCcEE--EE-------CCCCCHHHHHHH
Confidence 456666777778888888622 11 11 255667777888876 33 356778888888
Q ss_pred HHHHHhCCCCEEEEcC-CCCCCCHHHHH--HHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE--eecccC
Q 014369 283 AKELHDMGCFEISLGD-TIGVGTPGTVV--PMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV--DCSVAG 356 (426)
Q Consensus 283 ~~~l~~~Gad~I~l~D-T~G~~~P~~v~--~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V--D~Sv~G 356 (426)
++.+.+.|...|.|-= +.++=+|.+=. ..|..|++.+| .++|+=-|.. | +.-.++|+..||..| |.|+.-
T Consensus 132 v~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~-g--~~~~~~AvalGA~vIEKHfTldr 206 (241)
T PF03102_consen 132 VEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTD-G--IEAPIAAVALGARVIEKHFTLDR 206 (241)
T ss_dssp HHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SS-S--SHHHHHHHHTT-SEEEEEB-S-T
T ss_pred HHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCC-C--cHHHHHHHHcCCeEEEEEEECCC
Confidence 8888677765444443 44554554433 34899999999 5899999987 4 556789999999998 667653
No 229
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=94.33 E-value=1.3 Score=45.37 Aligned_cols=138 Identities=20% Similarity=0.123 Sum_probs=86.0
Q ss_pred HHHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc-CC-cEEEEEEeeecCCCC-CC
Q 014369 207 FEAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-SI-PVRGYVSCVVGCPVE-GA 273 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~-~v~~~v~~~fg~pd~-~r 273 (426)
.++|.++|.|.|.|...- |+. ++...+|-+.++=...+.++++.+|+. |. .|.+-++..-..+.. .-
T Consensus 158 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~ 237 (338)
T cd02933 158 ARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDS 237 (338)
T ss_pred HHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCC
Confidence 356678999988886432 222 233346667777677777888777764 44 344333321000000 12
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcC--CCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CCEE
Q 014369 274 IPPSKVAYVAKELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTV 350 (426)
Q Consensus 274 ~~~~~l~~~~~~l~~~Gad~I~l~D--T~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~~V 350 (426)
.++++..++++.+.+.|+|.|.+.. +... .+....++++.+++.++..-+.....+ ...+..+++.| ||.|
T Consensus 238 ~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~-~~~~~~~~~~~ik~~~~ipvi~~G~i~-----~~~a~~~l~~g~~D~V 311 (338)
T cd02933 238 DPEATFSYLAKELNKRGLAYLHLVEPRVAGN-PEDQPPDFLDFLRKAFKGPLIAAGGYD-----AESAEAALADGKADLV 311 (338)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCc-ccccchHHHHHHHHHcCCCEEEECCCC-----HHHHHHHHHcCCCCEE
Confidence 4678899999999999999998832 2221 134456778888888754335555543 67788999887 8876
No 230
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=94.32 E-value=0.094 Score=47.93 Aligned_cols=169 Identities=16% Similarity=0.162 Sum_probs=84.4
Q ss_pred HHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC-----C---------------h----hhHHHH
Q 014369 155 RRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP-----N---------------L----KGFEAA 210 (426)
Q Consensus 155 ~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-----~---------------~----~di~~a 210 (426)
+.+.++|++.||+.......+.+...+.+++.+.+++ .++++.++.. . . +.++.|
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~-~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a 80 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLED-YGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLA 80 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHH-TTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHH-cCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHH
Confidence 5678899999999864321110000123333333332 3566554431 1 1 235667
Q ss_pred HHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC
Q 014369 211 IAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG 290 (426)
Q Consensus 211 ~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G 290 (426)
...|++.+.+....-+...........+...+.+..++++|++.|+.+. +....+.......+.+.+.+++ .+.+
T Consensus 81 ~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~--lE~~~~~~~~~~~~~~~~~~~l---~~~~ 155 (213)
T PF01261_consen 81 KRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIA--LENHPGPFSETPFSVEEIYRLL---EEVD 155 (213)
T ss_dssp HHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEE--EE-SSSSSSSEESSHHHHHHHH---HHHT
T ss_pred HHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEE--EecccCccccchhhHHHHHHHH---hhcC
Confidence 7789999998855100000000011245566677788899999997765 3221111111112224544444 4455
Q ss_pred CCEE-EEcCCCCCCC-HHHHHHHHHHHHHhcCCceEEEEeCCCcC
Q 014369 291 CFEI-SLGDTIGVGT-PGTVVPMLEAVMAVVPVEKLAVHLHDTYG 333 (426)
Q Consensus 291 ad~I-~l~DT~G~~~-P~~v~~li~~l~~~~p~~~i~~H~HNd~G 333 (426)
-+.+ ..-||.=... .....+.++.+... -..+|++|..+
T Consensus 156 ~~~~~i~~D~~h~~~~~~~~~~~i~~~~~~----i~~vHi~D~~~ 196 (213)
T PF01261_consen 156 SPNVGICFDTGHLIMAGEDPDEAIKRLAPR----IKHVHIKDANG 196 (213)
T ss_dssp TTTEEEEEEHHHHHHTTHHHHHHHHHHHHG----EEEEEE-EESS
T ss_pred CCcceEEEehHHHHHcCCCHHHHHHHhhcc----eeEEEEeCCCC
Confidence 3323 3345532221 24555666666554 37899999888
No 231
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=94.27 E-value=1.9 Score=44.19 Aligned_cols=106 Identities=10% Similarity=0.075 Sum_probs=70.9
Q ss_pred HHHHHHhHhc--CCCcEEEEe-CC---hhhHHHHHHcCCCEEEEecc-CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 014369 183 RDVMEAVRDL--EGARLPVLT-PN---LKGFEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS 255 (426)
Q Consensus 183 ~~v~~~i~~~--~~~~l~~l~-~~---~~di~~a~~~Gv~~V~i~~~-~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G 255 (426)
+++++.++.. .+..+++-+ |. .+.++...++|+.+|.|.+. .++. .-..+|+. ...+++.++++.+++.|
T Consensus 71 ~~ll~~i~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~-~L~~lgR~--~~~~~~~~ai~~lr~~g 147 (350)
T PRK08446 71 EPIFEIISPYLSKDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNED-KLKFLGRI--HSQKQIIKAIENAKKAG 147 (350)
T ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHH-HHHHcCCC--CCHHHHHHHHHHHHHcC
Confidence 4555555532 345565544 42 46678888999999999874 4443 33344552 22455667888999999
Q ss_pred Cc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369 256 IP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (426)
Q Consensus 256 ~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l 296 (426)
+. |.+.++ +|.|.. +.+.+.+.++.+.+.|++.|.+
T Consensus 148 ~~~v~iDli--~GlPgq---t~~~~~~~l~~~~~l~~~~is~ 184 (350)
T PRK08446 148 FENISIDLI--YDTPLD---NKKLLKEELKLAKELPINHLSA 184 (350)
T ss_pred CCEEEEEee--cCCCCC---CHHHHHHHHHHHHhcCCCEEEe
Confidence 86 555665 666753 5778888889999999998765
No 232
>PRK12677 xylose isomerase; Provisional
Probab=94.27 E-value=2.9 Score=43.57 Aligned_cols=113 Identities=21% Similarity=0.208 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhCCCCeEEEecCC-CCCcccccc---CHHHHHHHhHhcCCCcEEEEeCC---------------------
Q 014369 149 VKVELIRRLVSSGLPVVEATSFV-SPKWVPQLA---DARDVMEAVRDLEGARLPVLTPN--------------------- 203 (426)
Q Consensus 149 ~ki~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~~---D~~~v~~~i~~~~~~~l~~l~~~--------------------- 203 (426)
.-.++++.+.++|++.||+...- .|-..+... ..+++.+.++ -.++++.++++|
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~-~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~ 110 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALD-ETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRR 110 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHH-HcCCeeEEEecCCCCCccccCCcCCCCCHHHHH
Confidence 34677888999999999996321 110011100 0223333332 135565554321
Q ss_pred ------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHH----HHHHHHHhcCCcEEEEEEe
Q 014369 204 ------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYR----AVAHAAKVLSIPVRGYVSC 264 (426)
Q Consensus 204 ------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~----~~v~~Ak~~G~~v~~~v~~ 264 (426)
++.|+.|.+.|++.|.++...... ......+.+++++++. .+.++|+++|..|+..|..
T Consensus 111 ~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~--~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEp 179 (384)
T PRK12677 111 YALRKVLRNIDLAAELGAKTYVMWGGREGA--EYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEP 179 (384)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeCCCCc--cCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEcc
Confidence 123567778899999998542100 0112234455555444 6778888877656544553
No 233
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=94.25 E-value=3.9 Score=43.36 Aligned_cols=149 Identities=9% Similarity=0.114 Sum_probs=90.2
Q ss_pred CCCeEEEecCCCCCccccccCHHHHHHHhHhc----CCCcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhh
Q 014369 161 GLPVVEATSFVSPKWVPQLADARDVMEAVRDL----EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSN 232 (426)
Q Consensus 161 Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~----~~~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~ 232 (426)
+++.|-+|-. .|..++ ..+..++++.++.. .+..+.+-+ | +.+.++...++|+.+|.|.+..-+......
T Consensus 102 ~v~~I~fgGG-tP~~l~-~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~ 179 (455)
T TIGR00538 102 HVSQLHWGGG-TPTYLS-PEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQA 179 (455)
T ss_pred ceEEEEECCC-CcCCCC-HHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHH
Confidence 6666766532 111110 02234555555532 234555444 3 346788888999999999874433223334
Q ss_pred cCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC------------
Q 014369 233 INCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT------------ 299 (426)
Q Consensus 233 ~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT------------ 299 (426)
+|+. ...+++.++++.+++.|++ +.+.++ +|.|.. +.+.+.+.++.+.++|++.|.+-.-
T Consensus 180 l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli--~GlPgq---t~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~ 252 (455)
T TIGR00538 180 VNRI--QPEEMIFELMNHAREAGFTSINIDLI--YGLPKQ---TKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQRK 252 (455)
T ss_pred hCCC--CCHHHHHHHHHHHHhcCCCcEEEeEE--eeCCCC---CHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHhc
Confidence 4542 2245667888999999986 555555 666654 6788888899999999998766432
Q ss_pred ---CCCCCHHHHHHHHHHHHHh
Q 014369 300 ---IGVGTPGTVVPMLEAVMAV 318 (426)
Q Consensus 300 ---~G~~~P~~v~~li~~l~~~ 318 (426)
.....+++..+++..+.+.
T Consensus 253 ~~~~~~~~~e~~~~~~~~~~~~ 274 (455)
T TIGR00538 253 IPEAALPSAEEKLDILQETIAF 274 (455)
T ss_pred ccccCCCCHHHHHHHHHHHHHH
Confidence 1123466666666666554
No 234
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=94.25 E-value=2.7 Score=41.17 Aligned_cols=142 Identities=14% Similarity=0.078 Sum_probs=73.9
Q ss_pred HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l 286 (426)
++.|.+.|++.|.++-. +...........+...+.+++++++|+++|+.+.. ... ..+ ...+++.+.+++
T Consensus 100 i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~l--E~~-~~~--~~~t~~~~~~li--- 169 (279)
T TIGR00542 100 IQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAV--EIM-DTP--FMSSISKWLKWD--- 169 (279)
T ss_pred HHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEE--eeC-CCc--hhcCHHHHHHHH---
Confidence 45666789998876521 10000000011345677778889999999987653 221 111 123344444443
Q ss_pred HhCCCCEEE-EcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCC
Q 014369 287 HDMGCFEIS-LGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKG 365 (426)
Q Consensus 287 ~~~Gad~I~-l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~g 365 (426)
.+.+-+.+. +-|+.-...-. ....+.++...+- -..+|++|..+ |. .+. ..+|
T Consensus 170 ~~v~~~~v~~~~D~~h~~~~~--~~~~~~i~~~~~~-i~~vHikD~~~------------~~--~~~--~p~G------- 223 (279)
T TIGR00542 170 HYLNSPWFTLYPDIGNLSAWD--NDVQMELQLGIDK-IVAIHLKDTKP------------GQ--FKD--VPFG------- 223 (279)
T ss_pred HHcCCCceEEEeCcChhhhcc--CCHHHHHHHhhhh-EEEEEeCCCCC------------Cc--cCC--cCCC-------
Confidence 344544333 35664221100 1122233322232 47889999754 11 011 1222
Q ss_pred CCCcccHHHHHHHHHhCCCC
Q 014369 366 ASGNVATEDVVYMLSGLGVE 385 (426)
Q Consensus 366 raGNa~lEevv~~L~~lG~~ 385 (426)
.|..+...++.+|+..|++
T Consensus 224 -~G~id~~~~~~aL~~~gy~ 242 (279)
T TIGR00542 224 -EGCVDFERCFKTLKQLNYR 242 (279)
T ss_pred -CCccCHHHHHHHHHHhCCc
Confidence 5889999999999998775
No 235
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=94.16 E-value=1.1 Score=44.64 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC-CCEEEE-----cCCC-CC---CCHH
Q 014369 237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEISL-----GDTI-GV---GTPG 306 (426)
Q Consensus 237 ~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G-ad~I~l-----~DT~-G~---~~P~ 306 (426)
.+..++++.+. .++.+..+.++|.. .+++.+.+.++.+.++| +|.|.| .-.. |. ..|+
T Consensus 76 ~~~~~~~~~~~---~~~~~~p~i~si~g---------~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~ 143 (301)
T PRK07259 76 VDAFIEEELPW---LEEFDTPIIANVAG---------STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPE 143 (301)
T ss_pred HHHHHHHHHHH---HhccCCcEEEEecc---------CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHH
Confidence 44555554442 23446666655531 35789999999999999 998877 1111 22 3589
Q ss_pred HHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369 307 TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 352 (426)
Q Consensus 307 ~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~ 352 (426)
.+.++++++++.+. .+|.+..=-+.--...-+..+.++|++.|+.
T Consensus 144 ~~~eiv~~vr~~~~-~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 144 LAYEVVKAVKEVVK-VPVIVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred HHHHHHHHHHHhcC-CCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 99999999999873 4677776544433344455677899998864
No 236
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=94.14 E-value=5.4 Score=38.37 Aligned_cols=203 Identities=19% Similarity=0.098 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEE--eCChhhHHHHHHcCCCEEEEeccC
Q 014369 147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVL--TPNLKGFEAAIAAGAKEVAIFASA 224 (426)
Q Consensus 147 ~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~~~~di~~a~~~Gv~~V~i~~~~ 224 (426)
..+-+++++.|.+.|++.|=+--.......+ -.+ .++.+.+++..+.++.+- +++.++++..++.|++.|.+...
T Consensus 26 ~~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~-~~~-~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~- 102 (243)
T cd04731 26 AGDPVELAKRYNEQGADELVFLDITASSEGR-ETM-LDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSA- 102 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEcCCcccccC-ccc-HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECch-
Confidence 3366889999999999955553221110000 012 234444543333444432 36788999999999998766422
Q ss_pred ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEee--------ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369 225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV--------VGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (426)
Q Consensus 225 Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~--------fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l 296 (426)
.+ +..+.+.++++...+.. +.+.+-.- +-.......+.....++++.+.+.|++.|.+
T Consensus 103 --~~----------~~p~~~~~i~~~~~~~~--i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v 168 (243)
T cd04731 103 --AV----------ENPELIREIAKRFGSQC--VVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILL 168 (243)
T ss_pred --hh----------hChHHHHHHHHHcCCCC--EEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEE
Confidence 11 11222333333322111 22222110 0000000112345567788899999999988
Q ss_pred --cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHc-CCCEEeecccCCCCCCCCCCCCCcccHH
Q 014369 297 --GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM-GISTVDCSVAGLGGCPYAKGASGNVATE 373 (426)
Q Consensus 297 --~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~a-Ga~~VD~Sv~GlGecP~a~graGNa~lE 373 (426)
-+..|..... -.++++.+++..+. ++..-+--. ....+..+++. ||+.|=+ |-.= -.|..+++
T Consensus 169 ~~i~~~g~~~g~-~~~~i~~i~~~~~~-pvia~GGi~---~~~di~~~l~~~g~dgv~v---g~al------~~~~~~~~ 234 (243)
T cd04731 169 TSMDRDGTKKGY-DLELIRAVSSAVNI-PVIASGGAG---KPEHFVEAFEEGGADAALA---ASIF------HFGEYTIA 234 (243)
T ss_pred eccCCCCCCCCC-CHHHHHHHHhhCCC-CEEEeCCCC---CHHHHHHHHHhCCCCEEEE---eHHH------HcCCCCHH
Confidence 4444443322 34567777766543 455443221 12344455555 7764422 2111 24556777
Q ss_pred HHHHHHH
Q 014369 374 DVVYMLS 380 (426)
Q Consensus 374 evv~~L~ 380 (426)
++...|+
T Consensus 235 ~~~~~~~ 241 (243)
T cd04731 235 ELKEYLA 241 (243)
T ss_pred HHHHHHh
Confidence 7766665
No 237
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=94.09 E-value=3.1 Score=44.10 Aligned_cols=98 Identities=14% Similarity=0.178 Sum_probs=66.6
Q ss_pred CCcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecC
Q 014369 194 GARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGC 268 (426)
Q Consensus 194 ~~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~ 268 (426)
+..+.+-+ | +.+-++...++|+.+|.|.+..-+......+|+. ...+.+.++++.+++.|+ .+.+.++ +|.
T Consensus 137 ~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli--~Gl 212 (453)
T PRK09249 137 DAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRI--QPFEFTFALVEAARELGFTSINIDLI--YGL 212 (453)
T ss_pred CCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCCcEEEEEE--ccC
Confidence 34555544 3 2467888889999999998743332233344442 234556678888999998 5766666 566
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 014369 269 PVEGAIPPSKVAYVAKELHDMGCFEISLGD 298 (426)
Q Consensus 269 pd~~r~~~~~l~~~~~~l~~~Gad~I~l~D 298 (426)
|.. +.+.+.+.++.+.+.|++.|.+-.
T Consensus 213 Pgq---t~e~~~~~l~~~~~l~~~~i~~y~ 239 (453)
T PRK09249 213 PKQ---TPESFARTLEKVLELRPDRLAVFN 239 (453)
T ss_pred CCC---CHHHHHHHHHHHHhcCCCEEEEcc
Confidence 654 578888888899999999887764
No 238
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=94.02 E-value=4.2 Score=36.24 Aligned_cols=133 Identities=16% Similarity=0.158 Sum_probs=78.9
Q ss_pred hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369 204 LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 283 (426)
Q Consensus 204 ~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~ 283 (426)
.+.++.+.+.|++.|.+-.............. ..+....+..+..+.+.+... ...+.+...+
T Consensus 15 ~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~a 77 (200)
T cd04722 15 VELAKAAAEAGADAIIVGTRSSDPEEAETDDK---------EVLKEVAAETDLPLGVQLAIN--------DAAAAVDIAA 77 (200)
T ss_pred HHHHHHHHcCCCCEEEEeeEEECcccCCCccc---------cHHHHHHhhcCCcEEEEEccC--------CchhhhhHHH
Confidence 35667777788888777654322111000000 112223334566666545321 1122333346
Q ss_pred HHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 014369 284 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL 357 (426)
Q Consensus 284 ~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~Gl 357 (426)
+.+.++|+|.|.+....+.. |....++++.+++.+|+.++.+=+|.......+. ..+.|++.|...-...
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~-~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~---~~~~g~d~i~~~~~~~ 147 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYL-AREDLELIRELREAVPDVKVVVKLSPTGELAAAA---AEEAGVDEVGLGNGGG 147 (200)
T ss_pred HHHHHcCCCEEEEeccCCcH-HHHHHHHHHHHHHhcCCceEEEEECCCCccchhh---HHHcCCCEEEEcCCcC
Confidence 78889999999999998875 8889999999999876555655555444332221 5688999887654433
No 239
>PRK09358 adenosine deaminase; Provisional
Probab=93.97 E-value=5.4 Score=40.34 Aligned_cols=133 Identities=16% Similarity=0.100 Sum_probs=77.6
Q ss_pred hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHH-HhcCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369 205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA-KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 283 (426)
Q Consensus 205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~A-k~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~ 283 (426)
..++.+++.|+..+.+++.. .+ ....|.+.++.++.+.+.++.| ++.|+++...++.. . ..+++...+.+
T Consensus 85 ~~~~e~~~~Gvty~E~~~~p--~~-~~~~gl~~~~~~~a~~~~~~~a~~~~gi~~~li~~~~----r--~~~~~~~~~~~ 155 (340)
T PRK09358 85 EYLEDAAADGVVYAEIRFDP--QL-HTERGLPLEEVVEAVLDGLRAAEAEFGISVRLILCFM----R--HFGEEAAAREL 155 (340)
T ss_pred HHHHHHHHcCCEEEEEEeCh--hh-hhhcCCCHHHHHHHHHHHHHHHHHhcCceEEEEEEec----C--CCCHHHHHHHH
Confidence 44567778899877776542 21 1234788999998888776665 55687766443321 1 12344444444
Q ss_pred HHHHh--CCCCEE--EEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHH-cCCCEE
Q 014369 284 KELHD--MGCFEI--SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-MGISTV 350 (426)
Q Consensus 284 ~~l~~--~Gad~I--~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~-aGa~~V 350 (426)
+.+.+ .+-..+ .++-.-....|+.+.+.++..++. +.++.+|+....+ ..+...|++ .|+++|
T Consensus 156 ~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~--g~~~~~H~~E~~~--~~~~~~al~~lg~~ri 223 (340)
T PRK09358 156 EALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDA--GLRLTAHAGEAGG--PESIWEALDELGAERI 223 (340)
T ss_pred HHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHC--CCCeEEcCCCCCc--hhHHHHHHHHcCCccc
Confidence 44443 332233 333221224677777777776653 3468888876544 345666777 788764
No 240
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=93.94 E-value=1.4 Score=45.28 Aligned_cols=86 Identities=10% Similarity=0.052 Sum_probs=60.3
Q ss_pred hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHH
Q 014369 204 LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYV 282 (426)
Q Consensus 204 ~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~ 282 (426)
.+-++...++|+.+|.|.+..-+-.....+|+. ...+++.++++.+++.|+. +.+.++ +|.|.. +.+.+.+.
T Consensus 99 ~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~--~~~~~~~~ai~~l~~~g~~~v~~dli--~GlPgq---t~e~~~~~ 171 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRI--HTFEEFLENYKLARKLGFNNINVDLM--FGLPNQ---TLEDWKET 171 (374)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEee--cCCCCC---CHHHHHHH
Confidence 456788888999998888743332333345552 1244566778889999986 666665 666754 57888888
Q ss_pred HHHHHhCCCCEEEE
Q 014369 283 AKELHDMGCFEISL 296 (426)
Q Consensus 283 ~~~l~~~Gad~I~l 296 (426)
++.+.++|++.|.+
T Consensus 172 l~~~~~l~~~~is~ 185 (374)
T PRK05799 172 LEKVVELNPEHISC 185 (374)
T ss_pred HHHHHhcCCCEEEE
Confidence 99999999987765
No 241
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=93.91 E-value=7.9 Score=42.12 Aligned_cols=116 Identities=10% Similarity=0.089 Sum_probs=77.1
Q ss_pred hhhHHHHHHcCCCEEEEecc-CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369 204 LKGFEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 282 (426)
Q Consensus 204 ~~di~~a~~~Gv~~V~i~~~-~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~ 282 (426)
.+.++...+.|+.+|.+.+. .++--+ ..+|+. ...+.+.++++.+|+.|+.+.+.++ +|.|.. +++...+-
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL-~~inRg--ht~~~v~~Ai~~lr~~G~~v~~~LM--~GLPgq---t~e~~~~t 277 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDIL-ERTKRG--HTVRDVVEATRLLRDAGLKVVYHIM--PGLPGS---SFERDLEM 277 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHH-HHhCCC--CCHHHHHHHHHHHHHcCCeEEEEee--cCCCCC---CHHHHHHH
Confidence 46788899999999998874 344333 334432 2244556778889999998887776 677754 35666666
Q ss_pred HHHHHh---CCCCEEEEcCCC-------------C---CCCHHHHHHHHHHHHHhcCCceEEEEe
Q 014369 283 AKELHD---MGCFEISLGDTI-------------G---VGTPGTVVPMLEAVMAVVPVEKLAVHL 328 (426)
Q Consensus 283 ~~~l~~---~Gad~I~l~DT~-------------G---~~~P~~v~~li~~l~~~~p~~~i~~H~ 328 (426)
++.+.+ +++|.|.|=-+. | ..++++..+++..+.+.+|. .+-+|-
T Consensus 278 ~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~~~lp~-~i~v~R 341 (522)
T TIGR01211 278 FREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEIKRMMPK-WVRIQR 341 (522)
T ss_pred HHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCc-ceEEEe
Confidence 666664 889988776532 2 23457777778888888873 344443
No 242
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=93.91 E-value=6.3 Score=37.81 Aligned_cols=134 Identities=22% Similarity=0.240 Sum_probs=79.1
Q ss_pred EEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCH---HHHHHHHHHHHHhcCCce----EEEEeCCCcCc
Q 014369 262 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTP---GTVVPMLEAVMAVVPVEK----LAVHLHDTYGQ 334 (426)
Q Consensus 262 v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P---~~v~~li~~l~~~~p~~~----i~~H~HNd~Gl 334 (426)
++.+.|+|.+..+...++.+ ++.+.+.|||.|-+.=-.|.+.. ..+.+-++.+++...+.+ ++...=++.-.
T Consensus 56 v~tVigFP~G~~~~~~K~~E-~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei 134 (211)
T TIGR00126 56 ICTVVGFPLGASTTDVKLYE-TKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEI 134 (211)
T ss_pred EEEEeCCCCCCCcHHHHHHH-HHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHH
Confidence 45567889866544455555 56788899999988888885544 666666777776543222 22222222222
Q ss_pred HHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhC----CCC--CCc-ChhhHHHHHHHHHHHhCC
Q 014369 335 SLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL----GVE--TNV-DLRKLMLAGDFINKHLGR 406 (426)
Q Consensus 335 A~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~l----G~~--~~i-Dl~~L~~la~~v~~~~g~ 406 (426)
. -.+..|+++|||+|=+|-+ .+ .+.+..|++..+.+.. +++ -|| +++...+.-+.-...+|.
T Consensus 135 ~-~a~~ia~eaGADfvKTsTG-f~--------~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~riGt 203 (211)
T TIGR00126 135 R-KACEICIDAGADFVKTSTG-FG--------AGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRIGA 203 (211)
T ss_pred H-HHHHHHHHhCCCEEEeCCC-CC--------CCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHhCc
Confidence 3 4455688999999988833 22 2447777766665532 222 233 345555544444455554
No 243
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=93.87 E-value=5.4 Score=39.49 Aligned_cols=135 Identities=13% Similarity=0.039 Sum_probs=85.9
Q ss_pred EEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCH---HHHHHHHHHHHHhcC-C--c--eEEEEeCCCcC
Q 014369 262 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTP---GTVVPMLEAVMAVVP-V--E--KLAVHLHDTYG 333 (426)
Q Consensus 262 v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P---~~v~~li~~l~~~~p-~--~--~i~~H~HNd~G 333 (426)
++.+.|+|.+..+....+.+ ++.+.+.||++|-+.=-+|.+.- +.+.+-|+.+++..+ . + .|+...=++.-
T Consensus 69 v~tVigFP~G~~~t~~K~~E-a~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee 147 (257)
T PRK05283 69 IATVTNFPHGNDDIDIALAE-TRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEA 147 (257)
T ss_pred EEEEecCCCCCCcHHHHHHH-HHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHH
Confidence 55667889865555555555 55677789999988877777665 445556666665433 1 1 35556566664
Q ss_pred cHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhC---------CCC--CCc-ChhhHHHHHHHHH
Q 014369 334 QSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL---------GVE--TNV-DLRKLMLAGDFIN 401 (426)
Q Consensus 334 lA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~l---------G~~--~~i-Dl~~L~~la~~v~ 401 (426)
.=.--+..|+++|||+|=+|-+ .+ .+.+..|++..+.+.. |++ -|| +++...++-+..+
T Consensus 148 ~i~~a~~~a~~aGADFVKTSTG-f~--------~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~ 218 (257)
T PRK05283 148 LIRKASEIAIKAGADFIKTSTG-KV--------PVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALAD 218 (257)
T ss_pred HHHHHHHHHHHhCCCEEEcCCC-CC--------CCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHH
Confidence 3234556799999999988854 33 2447788777765542 222 233 4556666666667
Q ss_pred HHhCC
Q 014369 402 KHLGR 406 (426)
Q Consensus 402 ~~~g~ 406 (426)
+.+|-
T Consensus 219 ~~lg~ 223 (257)
T PRK05283 219 EILGA 223 (257)
T ss_pred HHhCh
Confidence 77764
No 244
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=93.70 E-value=0.043 Score=52.16 Aligned_cols=162 Identities=19% Similarity=0.201 Sum_probs=96.4
Q ss_pred HHHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhcCCCcEE--EEeCC-hhhHHHHHHcCCCEEEEecc
Q 014369 151 VELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARLP--VLTPN-LKGFEAAIAAGAKEVAIFAS 223 (426)
Q Consensus 151 i~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~--~l~~~-~~di~~a~~~Gv~~V~i~~~ 223 (426)
.+-++.|.++|++.+=+ |.|+ |++.-..+.++.+++..+..+- .++.+ .+-++...++|++.|.+..-
T Consensus 15 ~~~i~~l~~~g~d~lHiDiMDg~fv-----pn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E 89 (201)
T PF00834_consen 15 EEEIKRLEEAGADWLHIDIMDGHFV-----PNLTFGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITFHAE 89 (201)
T ss_dssp HHHHHHHHHTT-SEEEEEEEBSSSS-----SSB-B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGG
T ss_pred HHHHHHHHHcCCCEEEEeecccccC-----CcccCCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEccc
Confidence 45678889999996544 4444 4554456777788876655544 45555 45688899999998877542
Q ss_pred CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----cCC
Q 014369 224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----GDT 299 (426)
Q Consensus 224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----~DT 299 (426)
+.+...++++++|++|+++...+. |. ++.+.+.++.. -+|.|-+ +..
T Consensus 90 ----------------~~~~~~~~i~~ik~~g~k~Gialn-----P~---T~~~~~~~~l~-----~vD~VlvMsV~PG~ 140 (201)
T PF00834_consen 90 ----------------ATEDPKETIKYIKEAGIKAGIALN-----PE---TPVEELEPYLD-----QVDMVLVMSVEPGF 140 (201)
T ss_dssp ----------------GTTTHHHHHHHHHHTTSEEEEEE------TT---S-GGGGTTTGC-----CSSEEEEESS-TTT
T ss_pred ----------------chhCHHHHHHHHHHhCCCEEEEEE-----CC---CCchHHHHHhh-----hcCEEEEEEecCCC
Confidence 234456788899999999875553 32 34444444332 2555444 344
Q ss_pred CCCCCHHHHHHHHHHHHHhcC----CceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 300 IGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 300 ~G~~~P~~v~~li~~l~~~~p----~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
.|...=..+.+-|+.+++..+ ...|++ |=|.-..|+-...++||+.+
T Consensus 141 ~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~v----DGGI~~~~~~~~~~aGad~~ 191 (201)
T PF00834_consen 141 GGQKFIPEVLEKIRELRKLIPENGLDFEIEV----DGGINEENIKQLVEAGADIF 191 (201)
T ss_dssp SSB--HGGHHHHHHHHHHHHHHHTCGSEEEE----ESSESTTTHHHHHHHT--EE
T ss_pred CcccccHHHHHHHHHHHHHHHhcCCceEEEE----ECCCCHHHHHHHHHcCCCEE
Confidence 554444445555666665443 234555 55777778888899999966
No 245
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=93.69 E-value=3.2 Score=42.75 Aligned_cols=108 Identities=22% Similarity=0.208 Sum_probs=71.8
Q ss_pred HHHHHHHhHhc----CCCcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 014369 182 ARDVMEAVRDL----EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV 253 (426)
Q Consensus 182 ~~~v~~~i~~~----~~~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~ 253 (426)
..++++.++.. ++.++++-+ | +.+.++...++|+.+|.+.+..-+......+|+. ...+++.++++.+++
T Consensus 78 l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~--~s~~~~~~a~~~l~~ 155 (375)
T PRK05628 78 LARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRT--HTPGRAVAAAREARA 155 (375)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHH
Confidence 34555555532 345555544 3 2456788888999999999744333334445543 234455677888999
Q ss_pred cCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369 254 LSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (426)
Q Consensus 254 ~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l 296 (426)
.|+. +.+.++ +|.|.. +.+.+.+-++.+.++|++.|.+
T Consensus 156 ~g~~~v~~dli--~GlPgq---t~~~~~~tl~~~~~l~~~~i~~ 194 (375)
T PRK05628 156 AGFEHVNLDLI--YGTPGE---SDDDWRASLDAALEAGVDHVSA 194 (375)
T ss_pred cCCCcEEEEEe--ccCCCC---CHHHHHHHHHHHHhcCCCEEEe
Confidence 9998 776666 666754 4678888888999999987764
No 246
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=93.68 E-value=2.8 Score=43.19 Aligned_cols=95 Identities=7% Similarity=-0.010 Sum_probs=65.1
Q ss_pred CcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCC
Q 014369 195 ARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCP 269 (426)
Q Consensus 195 ~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~p 269 (426)
+++.+-+ | +.+.++...++|+.+|.+.+..-+......+|+. ...+++.++++.+++.|+. +.+.++ +|.|
T Consensus 87 ~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~--~~~~~~~~~i~~l~~~g~~~v~~dli--~GlP 162 (377)
T PRK08599 87 EEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRT--HNEEDVYEAIANAKKAGFDNISIDLI--YALP 162 (377)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEeee--cCCC
Confidence 3555444 3 3466788888999999998754433333345553 2355667888899999987 555555 6777
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369 270 VEGAIPPSKVAYVAKELHDMGCFEISL 296 (426)
Q Consensus 270 d~~r~~~~~l~~~~~~l~~~Gad~I~l 296 (426)
.. +.+.+.+.++.+.+++++.|.+
T Consensus 163 gq---t~~~~~~~l~~~~~l~~~~i~~ 186 (377)
T PRK08599 163 GQ---TIEDFKESLAKALALDIPHYSA 186 (377)
T ss_pred CC---CHHHHHHHHHHHHccCCCEEee
Confidence 54 4678888888889999987754
No 247
>PRK05660 HemN family oxidoreductase; Provisional
Probab=93.68 E-value=3.9 Score=42.31 Aligned_cols=108 Identities=14% Similarity=0.120 Sum_probs=71.8
Q ss_pred HHHHHHHhHh-c---CCCcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 014369 182 ARDVMEAVRD-L---EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV 253 (426)
Q Consensus 182 ~~~v~~~i~~-~---~~~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~ 253 (426)
..++++.+++ . +++.+++-+ | +.+.++...++|+.+|.+.+..-+...-..+|+. ...+++.++++.+++
T Consensus 77 l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~--~~~~~~~~ai~~~~~ 154 (378)
T PRK05660 77 IQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRI--HGPDEAKRAAKLAQG 154 (378)
T ss_pred HHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCC--CCHHHHHHHHHHHHH
Confidence 3455555553 2 345666555 3 2467888889999999998754443333345543 234556677888999
Q ss_pred cCCcE-EEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369 254 LSIPV-RGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (426)
Q Consensus 254 ~G~~v-~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l 296 (426)
.|+.. .+.++ +|.|.. +.+.+.+.++.+.++|++.|.+
T Consensus 155 ~G~~~v~~dli--~Glpgq---t~~~~~~~l~~~~~l~p~~is~ 193 (378)
T PRK05660 155 LGLRSFNLDLM--HGLPDQ---SLEEALDDLRQAIALNPPHLSW 193 (378)
T ss_pred cCCCeEEEEee--cCCCCC---CHHHHHHHHHHHHhcCCCeEEe
Confidence 99963 55555 666754 5788888899999999998863
No 248
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=93.62 E-value=2.4 Score=43.04 Aligned_cols=135 Identities=22% Similarity=0.220 Sum_probs=84.2
Q ss_pred HHHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc---CCcEEEEEEeeecCCCCCC
Q 014369 207 FEAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGA 273 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~---G~~v~~~v~~~fg~pd~~r 273 (426)
.+++.++|.|.|.|-..- |+. .+...+|-+.++-.+.+.++++.+|+. ++.|.+-+...-. ....
T Consensus 160 A~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~--~~~g 237 (336)
T cd02932 160 ARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDW--VEGG 237 (336)
T ss_pred HHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEccccc--CCCC
Confidence 356677999988876421 221 334456778888888888888888875 3445544442110 1234
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCC--------CCHHHHHHHHHHHHHhcCCceEEE-EeCCCcCcHHHHHHHHHH
Q 014369 274 IPPSKVAYVAKELHDMGCFEISLGDTIGV--------GTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQ 344 (426)
Q Consensus 274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~--------~~P~~v~~li~~l~~~~p~~~i~~-H~HNd~GlA~ANaLaAl~ 344 (426)
.+++...++++.+.++|+|.|.+. .|. ..|....++.+.+++.++. +|.. -.-. ....+..+++
T Consensus 238 ~~~~e~~~ia~~Le~~gvd~iev~--~g~~~~~~~~~~~~~~~~~~~~~ir~~~~i-PVi~~G~i~----t~~~a~~~l~ 310 (336)
T cd02932 238 WDLEDSVELAKALKELGVDLIDVS--SGGNSPAQKIPVGPGYQVPFAERIRQEAGI-PVIAVGLIT----DPEQAEAILE 310 (336)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEC--CCCCCcccccCCCccccHHHHHHHHhhCCC-CEEEeCCCC----CHHHHHHHHH
Confidence 578899999999999999999873 121 1122334667778887753 3332 2222 2456677788
Q ss_pred cC-CCEE
Q 014369 345 MG-ISTV 350 (426)
Q Consensus 345 aG-a~~V 350 (426)
.| +|.|
T Consensus 311 ~g~aD~V 317 (336)
T cd02932 311 SGRADLV 317 (336)
T ss_pred cCCCCee
Confidence 88 6665
No 249
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.62 E-value=7.4 Score=38.28 Aligned_cols=201 Identities=16% Similarity=0.150 Sum_probs=102.2
Q ss_pred HHHHHHHHhCCCCeEEEecCCCCC-ccccccC---HHHHHHHhHh--cCCCcEEEEe--------CCh-----------h
Q 014369 151 VELIRRLVSSGLPVVEATSFVSPK-WVPQLAD---ARDVMEAVRD--LEGARLPVLT--------PNL-----------K 205 (426)
Q Consensus 151 i~I~~~L~~~Gv~~IEvG~~~s~~-~~p~~~D---~~~v~~~i~~--~~~~~l~~l~--------~~~-----------~ 205 (426)
...++.+.+.|++.+|+- ..+|. |....-+ .+++.+.+.. +....+.+.+ ++. +
T Consensus 14 ~~a~~~~~~~G~~~~qif-~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~~ 92 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFF-LKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYLINLASPDEEKEEKSLDVLDE 92 (274)
T ss_pred HHHHHHHHHhCCCEEEEE-ecCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCeeeecCCCCHHHHHHHHHHHHH
Confidence 457788899999999993 33443 3222212 2222222221 1111122221 221 2
Q ss_pred hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (426)
Q Consensus 206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~ 285 (426)
.++.|...|++.|.+..+.- ...+.+++++++.+.++.+-+....|...+...-+.+..--.+++.+.++.+.
T Consensus 93 ~i~~A~~lga~~vv~H~G~~-------~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~el~~ll~~ 165 (274)
T TIGR00587 93 ELKRCELLGIMLYNFHPGSA-------LKCSEEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFEELAYIIKV 165 (274)
T ss_pred HHHHHHHcCCCEEEECCCCC-------CCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHHHHHHHHHh
Confidence 35667778888666653211 12245677777777765554322224444443222211122477777777665
Q ss_pred HHhCCCCEEEEc-CC-----CCCC--CHHHHHHHHHHHHHhcC-CceEEEEeCCCcC-cHHHHHHHHHHcCCCEEeeccc
Q 014369 286 LHDMGCFEISLG-DT-----IGVG--TPGTVVPMLEAVMAVVP-VEKLAVHLHDTYG-QSLPNILISLQMGISTVDCSVA 355 (426)
Q Consensus 286 l~~~Gad~I~l~-DT-----~G~~--~P~~v~~li~~l~~~~p-~~~i~~H~HNd~G-lA~ANaLaAl~aGa~~VD~Sv~ 355 (426)
+.. .+.+.++ || .|.- ++..+.++++.+.+.++ ..-..+|+||+.. .+ .|.+ -+ .
T Consensus 166 ~~~--~~~lg~~lDt~H~~~~g~~~~~~~~~~~~~~~~~~~~g~~~i~~vHl~Ds~~~~g---------~~~d-~H---~ 230 (274)
T TIGR00587 166 IVD--KRRIGVCLDTCHFFAAGYDITTKAYFEVVKNEFDVVVGFKYLKAIHLNDSKNVLG---------SRKD-RH---E 230 (274)
T ss_pred cCC--CCceEEEEEhhhHHhcCCCcCCHHHHHHHHHHHHHhcCHhheeEEEEEcCccccc---------cCcC-CC---C
Confidence 432 1233333 22 2321 26667777777776654 2236689998742 11 0111 11 2
Q ss_pred CCCCCCCCCCCCCcccHHHHHHHHHhC
Q 014369 356 GLGGCPYAKGASGNVATEDVVYMLSGL 382 (426)
Q Consensus 356 GlGecP~a~graGNa~lEevv~~L~~l 382 (426)
.+| .|+.+.+.++..|+..
T Consensus 231 ~iG--------~G~i~~~~~~~~L~~~ 249 (274)
T TIGR00587 231 NIG--------EGIIGFDAFRLIMDDE 249 (274)
T ss_pred CcC--------CccCCHHHHHHHHcCc
Confidence 233 4889999999999763
No 250
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=93.62 E-value=0.39 Score=46.33 Aligned_cols=99 Identities=16% Similarity=0.096 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHH--HHHHHHHHHhcCCceEEEEeC-CCcCcHHHHHHHHHHcCCCEE
Q 014369 274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTV--VPMLEAVMAVVPVEKLAVHLH-DTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v--~~li~~l~~~~p~~~i~~H~H-Nd~GlA~ANaLaAl~aGa~~V 350 (426)
.|+..+.+.++++.+.|++.+=+==+-|...|+-. .+.++.+++..|..++.+|.| +|....+ -...++||++|
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i---~~~~~~Gad~i 92 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWV---DDFAKAGASQF 92 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHH---HHHHHcCCCEE
Confidence 46788999999999999986544333388888632 467889988877778999999 4433322 45668899988
Q ss_pred eecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCC
Q 014369 351 DCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVET 386 (426)
Q Consensus 351 D~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~ 386 (426)
|+.+ | ++...++..+..++.+|...
T Consensus 93 --tvH~--e-------a~~~~~~~~l~~ik~~G~~~ 117 (228)
T PTZ00170 93 --TFHI--E-------ATEDDPKAVARKIREAGMKV 117 (228)
T ss_pred --EEec--c-------CCchHHHHHHHHHHHCCCeE
Confidence 4443 2 22222667777777666543
No 251
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.59 E-value=0.85 Score=47.91 Aligned_cols=72 Identities=14% Similarity=0.174 Sum_probs=54.8
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 014369 279 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG 358 (426)
Q Consensus 279 l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlG 358 (426)
..+.++.+.++|+|.|.| |+.. ..+..+.++++.+++.+|+..|-+..=- -...++.++++|||.|-+ |+|
T Consensus 154 ~~~~v~~lv~aGvDvI~i-D~a~-g~~~~~~~~v~~ik~~~p~~~vi~g~V~----T~e~a~~l~~aGaD~I~v---G~g 224 (404)
T PRK06843 154 TIERVEELVKAHVDILVI-DSAH-GHSTRIIELVKKIKTKYPNLDLIAGNIV----TKEAALDLISVGADCLKV---GIG 224 (404)
T ss_pred HHHHHHHHHhcCCCEEEE-ECCC-CCChhHHHHHHHHHhhCCCCcEEEEecC----CHHHHHHHHHcCCCEEEE---CCC
Confidence 456688899999999998 6665 4578999999999999997555444322 246778889999999984 555
Q ss_pred C
Q 014369 359 G 359 (426)
Q Consensus 359 e 359 (426)
.
T Consensus 225 ~ 225 (404)
T PRK06843 225 P 225 (404)
T ss_pred C
Confidence 3
No 252
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=93.58 E-value=1.3 Score=43.14 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=89.4
Q ss_pred hhHHHHHHcCCCEEEEeccCChHHHhhhc------CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH
Q 014369 205 KGFEAAIAAGAKEVAIFASASEAFSKSNI------NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK 278 (426)
Q Consensus 205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~------~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~ 278 (426)
-..+.+.++|++.+.+.-+. ....+ ..+.++.++.++.+++.+ .+++.+.+- . +-.+++.
T Consensus 20 ~sA~~~e~~G~~ai~~s~~~----~~~s~G~pD~~~~~~~e~~~~~~~I~~~~---~~Pv~~D~~------~-G~g~~~~ 85 (243)
T cd00377 20 LSARLAERAGFKAIYTSGAG----VAASLGLPDGGLLTLDEVLAAVRRIARAV---DLPVIADAD------T-GYGNALN 85 (243)
T ss_pred HHHHHHHHcCCCEEEeccHH----HHHhcCCCCCCcCCHHHHHHHHHHHHhhc---cCCEEEEcC------C-CCCCHHH
Confidence 34456667798887775221 11111 236788888777766554 445543332 2 2236788
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCC-----------CCCHHHHHHHHHHHHHhcCC---ceEEEE-----e-CCCcCcHHHH
Q 014369 279 VAYVAKELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVVPV---EKLAVH-----L-HDTYGQSLPN 338 (426)
Q Consensus 279 l~~~~~~l~~~Gad~I~l~DT~G-----------~~~P~~v~~li~~l~~~~p~---~~i~~H-----~-HNd~GlA~AN 338 (426)
+.+.++.+.+.|++.|.|-|..+ +..+++..+.|++.++...+ ..|-.- . .+.+--++.-
T Consensus 86 ~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~R 165 (243)
T cd00377 86 VARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIER 165 (243)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHH
Confidence 88999999999999999988763 56788888889988887543 222222 1 1456668899
Q ss_pred HHHHHHcCCCEEe
Q 014369 339 ILISLQMGISTVD 351 (426)
Q Consensus 339 aLaAl~aGa~~VD 351 (426)
+.++.++|||.|=
T Consensus 166 a~ay~~AGAD~v~ 178 (243)
T cd00377 166 AKAYAEAGADGIF 178 (243)
T ss_pred HHHHHHcCCCEEE
Confidence 9999999999763
No 253
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=93.58 E-value=1.9 Score=46.51 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=92.1
Q ss_pred HHHHHHHHHhCCCCeEEEecCC-CCCccccccCHHHHHHHhHh-cCCCcEEE-EeCChhhHHHHHHcCCCEEEEeccCC-
Q 014369 150 KVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRD-LEGARLPV-LTPNLKGFEAAIAAGAKEVAIFASAS- 225 (426)
Q Consensus 150 ki~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~~~v~~~i~~-~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~~S- 225 (426)
-++.++.|.++|++.|++-... .. ....+.++.++. .|++.+.+ -+-+.++.+.++++|+|.|.+.+...
T Consensus 242 ~~~~~~~l~~ag~d~i~id~a~G~s------~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs 315 (495)
T PTZ00314 242 DIERAAALIEAGVDVLVVDSSQGNS------IYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGS 315 (495)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCc------hHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCc
Confidence 3899999999999999997521 11 112344555553 35555444 23467899999999999998754211
Q ss_pred --hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 014369 226 --EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG 303 (426)
Q Consensus 226 --d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~ 303 (426)
-.......+.. .+..+.++.+.+++.|+++. ++.+-.++.++++ +.++||+.+.+.--. +
T Consensus 316 ~~~t~~~~~~g~p---~~~ai~~~~~~~~~~~v~vI---------adGGi~~~~di~k----Ala~GA~~Vm~G~~~--a 377 (495)
T PTZ00314 316 ICITQEVCAVGRP---QASAVYHVARYARERGVPCI---------ADGGIKNSGDICK----ALALGADCVMLGSLL--A 377 (495)
T ss_pred ccccchhccCCCC---hHHHHHHHHHHHhhcCCeEE---------ecCCCCCHHHHHH----HHHcCCCEEEECchh--c
Confidence 11111122222 24455677778888887654 2455455555443 335999999876542 1
Q ss_pred CHHHHHHHHHHHHHhcCCceE---EEEeCCCcCcHHHHHHH
Q 014369 304 TPGTVVPMLEAVMAVVPVEKL---AVHLHDTYGQSLPNILI 341 (426)
Q Consensus 304 ~P~~v~~li~~l~~~~p~~~i---~~H~HNd~GlA~ANaLa 341 (426)
.+. +.|...+ +-....-+|||...++.
T Consensus 378 ~~~-----------e~~~~~~~~~g~~~k~yrGm~s~~a~~ 407 (495)
T PTZ00314 378 GTE-----------EAPGEYFFKDGVRLKVYRGMGSLEAML 407 (495)
T ss_pred ccc-----------ccCCceeeeCCeEEEEEeccchHHHhh
Confidence 111 2333111 23455678999766554
No 254
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=93.52 E-value=2 Score=42.32 Aligned_cols=78 Identities=19% Similarity=0.234 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEc----CCCC----CCCHHHHHHHHHHHHHhcCCceEEEEeCCCcC--cHHHHHHHHHH
Q 014369 275 PPSKVAYVAKELHDMGCFEISLG----DTIG----VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG--QSLPNILISLQ 344 (426)
Q Consensus 275 ~~~~l~~~~~~l~~~Gad~I~l~----DT~G----~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~G--lA~ANaLaAl~ 344 (426)
+++.+.+.++.+.++|+|.|.|- .+.+ .-.|..+.++++.+++.+. .+|.+-.=-... -...-+-++.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~-~pv~vKl~~~~~~~~~~~~a~~l~~ 187 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVD-IPLLVKLSPYFDLEDIVELAKAAER 187 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccC-CCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 67889999999999999977762 2221 2368899999999998863 356655443333 23445556678
Q ss_pred cCCCEEeec
Q 014369 345 MGISTVDCS 353 (426)
Q Consensus 345 aGa~~VD~S 353 (426)
+||+.|.++
T Consensus 188 ~Gad~i~~~ 196 (289)
T cd02810 188 AGADGLTAI 196 (289)
T ss_pred cCCCEEEEE
Confidence 999988764
No 255
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=93.51 E-value=0.66 Score=43.84 Aligned_cols=171 Identities=16% Similarity=0.110 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCc--EEEE-eCC-h-hhHHHHHHcCCCEEE
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGAR--LPVL-TPN-L-KGFEAAIAAGAKEVA 219 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~--l~~l-~~~-~-~di~~a~~~Gv~~V~ 219 (426)
.+.++.+++++.+... +..||+|.+--.. ...++++.+++..... +-.+ ..+ . .-++.+.++|+|.|.
T Consensus 13 ~~~~~~~~~~~~~~~~-~~~vk~g~~l~~~------~G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vt 85 (215)
T PRK13813 13 TDRERALKIAEELDDY-VDAIKVGWPLVLA------SGLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGII 85 (215)
T ss_pred CCHHHHHHHHHhcccc-CCEEEEcHHHHHh------hCHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEE
Confidence 3566667777666443 5789999642110 1124555565432211 1111 222 2 234788899999888
Q ss_pred EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299 (426)
Q Consensus 220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT 299 (426)
+..-... +.+..+++++++.|+++.+.+... .+.....-.+++..+++...+.|.+...+.-
T Consensus 86 vh~e~g~---------------~~l~~~i~~~~~~g~~~~v~~~~~--~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~- 147 (215)
T PRK13813 86 VHGFTGR---------------DSLKAVVEAAAESGGKVFVVVEMS--HPGALEFIQPHADKLAKLAQEAGAFGVVAPA- 147 (215)
T ss_pred EcCcCCH---------------HHHHHHHHHHHhcCCeEEEEEeCC--CCCCCCCHHHHHHHHHHHHHHhCCCeEEECC-
Confidence 7654321 234567888899999876544321 1211111134566677777888987654221
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHH--HHHHHHHcCCCEEe
Q 014369 300 IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP--NILISLQMGISTVD 351 (426)
Q Consensus 300 ~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~A--NaLaAl~aGa~~VD 351 (426)
..+ +.++.+++..+. .+.+ =|-|.... |.-.++++|++++-
T Consensus 148 ---~~~----~~i~~l~~~~~~-~~~i---vdgGI~~~g~~~~~~~~aGad~iV 190 (215)
T PRK13813 148 ---TRP----ERVRYIRSRLGD-ELKI---ISPGIGAQGGKAADAIKAGADYVI 190 (215)
T ss_pred ---Ccc----hhHHHHHHhcCC-CcEE---EeCCcCCCCCCHHHHHHcCCCEEE
Confidence 112 334556555542 1111 22344433 48889999999773
No 256
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=93.49 E-value=2.3 Score=45.32 Aligned_cols=144 Identities=18% Similarity=0.266 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCC-CCCc--cccccCHHHHHHHhHhcCCC-cEE--EEeCC---hhhHHHHHHc-
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFV-SPKW--VPQLADARDVMEAVRDLEGA-RLP--VLTPN---LKGFEAAIAA- 213 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~-s~~~--~p~~~D~~~v~~~i~~~~~~-~l~--~l~~~---~~di~~a~~~- 213 (426)
..+.++.++.++.|.+.|++.|.+.-.. +..+ .|.-.+..++++.+...++. ++. ...|. .+-++...+.
T Consensus 183 sr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~ 262 (459)
T PRK14338 183 SRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPAWMTDRLIHAVARLP 262 (459)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChhhcCHHHHHHHhccc
Confidence 5689999999999999999988775311 1111 11112345566666554443 333 22232 2334555453
Q ss_pred -CCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369 214 -GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (426)
Q Consensus 214 -Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~ 289 (426)
|...+++.+ +.|+--++. +++. ...+.+.++++.+++. |+.+.++++ +|.|.. +.+.+.+.++.+.+.
T Consensus 263 ~~~~~v~lglQSgsd~vLk~-m~R~--~t~e~~~~~i~~lr~~~pgi~i~~d~I--vG~PgE---T~ed~~~ti~~l~~l 334 (459)
T PRK14338 263 KCCPHINLPVQAGDDEVLKR-MRRG--YTVARYRELIARIREAIPDVSLTTDII--VGHPGE---TEEQFQRTYDLLEEI 334 (459)
T ss_pred ccccceecCcccCCHHHHHh-ccCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EECCCC---CHHHHHHHHHHHHHc
Confidence 467787776 445543332 4432 1345556777777777 666666666 677765 467777888888888
Q ss_pred CCCEEE
Q 014369 290 GCFEIS 295 (426)
Q Consensus 290 Gad~I~ 295 (426)
+.+.+.
T Consensus 335 ~~~~v~ 340 (459)
T PRK14338 335 RFDKVH 340 (459)
T ss_pred CCCEeE
Confidence 887554
No 257
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=93.42 E-value=6.9 Score=36.71 Aligned_cols=172 Identities=17% Similarity=0.134 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCc--EEEEeCC-hhhHHHHHHcCCCEEEEe
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGAR--LPVLTPN-LKGFEAAIAAGAKEVAIF 221 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~--l~~l~~~-~~di~~a~~~Gv~~V~i~ 221 (426)
++...-.+.++.+.+.|++.|+++.-- ....|...-..+..+.++...+.. +..++.. .+.++.+.++|++.|.+.
T Consensus 13 ~~~~~~~~~~~~~~~~G~~~i~l~~~d-~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~vh 91 (220)
T PRK05581 13 ADFARLGEEVKAVEAAGADWIHVDVMD-GHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITFH 91 (220)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCcc-CCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEe
Confidence 344555778999999999999996311 111222211123344444322222 2234443 456788889999997776
Q ss_pred ccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----c
Q 014369 222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----G 297 (426)
Q Consensus 222 ~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----~ 297 (426)
...++ ...+.++.+++.|+.+...+. | .++.+.+.++. .++|.|.+ +
T Consensus 92 ~~~~~----------------~~~~~~~~~~~~~~~~g~~~~-----~---~t~~e~~~~~~-----~~~d~i~~~~~~~ 142 (220)
T PRK05581 92 VEASE----------------HIHRLLQLIKSAGIKAGLVLN-----P---ATPLEPLEDVL-----DLLDLVLLMSVNP 142 (220)
T ss_pred eccch----------------hHHHHHHHHHHcCCEEEEEEC-----C---CCCHHHHHHHH-----hhCCEEEEEEECC
Confidence 44222 223557788889987663221 1 12333333322 23554433 2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCC----ceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 298 DTIGVGTPGTVVPMLEAVMAVVPV----EKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 298 DT~G~~~P~~v~~li~~l~~~~p~----~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
-+.|...+....+.++.+++..+. ..+.+ +-|.-..|+-..+++|++.|
T Consensus 143 g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v----~GGI~~~nv~~l~~~GaD~v 195 (220)
T PRK05581 143 GFGGQKFIPEVLEKIRELRKLIDERGLDILIEV----DGGINADNIKECAEAGADVF 195 (220)
T ss_pred CCCcccccHHHHHHHHHHHHHHHhcCCCceEEE----ECCCCHHHHHHHHHcCCCEE
Confidence 334433344556666666655431 12222 34888888888888999865
No 258
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=93.40 E-value=0.81 Score=46.68 Aligned_cols=77 Identities=21% Similarity=0.240 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCC-CCCCCHHHHHHHHHHHHHhcCCceEEEEe---------CCCcCcHHHHHHHH
Q 014369 273 AIPPSKVAYVAKELHDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVVPVEKLAVHL---------HDTYGQSLPNILIS 342 (426)
Q Consensus 273 r~~~~~l~~~~~~l~~~Gad~I~l~DT-~G~~~P~~v~~li~~l~~~~p~~~i~~H~---------HNd~GlA~ANaLaA 342 (426)
+.+++.+.+.++.+.+.|+..|.|.+- .-....+.+.++++.+++..|. +.+|+ |.+.|+-..-.+..
T Consensus 69 ~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~--i~~~~~t~~ei~~~~~~~g~~~~e~l~~ 146 (343)
T TIGR03551 69 LLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPG--MHIHAFSPMEVYYGARNSGLSVEEALKR 146 (343)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCC--ceEEecCHHHHHHHHHHcCCCHHHHHHH
Confidence 468999999999999999999999932 2234677889999999998875 44554 66888877777776
Q ss_pred H-HcCCCEEe
Q 014369 343 L-QMGISTVD 351 (426)
Q Consensus 343 l-~aGa~~VD 351 (426)
+ +||++.+.
T Consensus 147 LkeAGl~~i~ 156 (343)
T TIGR03551 147 LKEAGLDSMP 156 (343)
T ss_pred HHHhCccccc
Confidence 6 78999886
No 259
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=93.39 E-value=7.6 Score=39.78 Aligned_cols=176 Identities=15% Similarity=0.186 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEecC-----CCC---C--c-ccc-c--cCHHHHHHHh----------H-h--cCCCcEE
Q 014369 146 PTGVKVELIRRLVSSGLPVVEATSF-----VSP---K--W-VPQ-L--ADARDVMEAV----------R-D--LEGARLP 198 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~Gv~~IEvG~~-----~s~---~--~-~p~-~--~D~~~v~~~i----------~-~--~~~~~l~ 198 (426)
+.+..+++++.-.++|.+.|=+=.+ ..+ + + .+. . ....++++.+ . . -.++.+.
T Consensus 14 dl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~ 93 (329)
T TIGR03569 14 SLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEFL 93 (329)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcEE
Confidence 6677788888889999998776432 111 1 0 000 0 0111111111 1 1 1233333
Q ss_pred EEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH
Q 014369 199 VLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK 278 (426)
Q Consensus 199 ~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~ 278 (426)
.-.-....++...+.|++.+.|.-. +. .+ ..+++++.+.|.+|. ++ .+..+.++
T Consensus 94 stpfd~~svd~l~~~~v~~~KIaS~--~~--------------~n-~pLL~~~A~~gkPvi--lS-------tGmatl~E 147 (329)
T TIGR03569 94 STPFDLESADFLEDLGVPRFKIPSG--EI--------------TN-APLLKKIARFGKPVI--LS-------TGMATLEE 147 (329)
T ss_pred EEeCCHHHHHHHHhcCCCEEEECcc--cc--------------cC-HHHHHHHHhcCCcEE--EE-------CCCCCHHH
Confidence 3334678888888889998888622 11 11 255666777798876 33 24468899
Q ss_pred HHHHHHHHHhCCCC--EEEE--cCCCCCCCHHHHHH--HHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369 279 VAYVAKELHDMGCF--EISL--GDTIGVGTPGTVVP--MLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 352 (426)
Q Consensus 279 l~~~~~~l~~~Gad--~I~l--~DT~G~~~P~~v~~--li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~ 352 (426)
+...++.+.+.|.. .|.| | +.++-+|..-.+ .|..+++.++ .+|++=-|- ++...+++|+..||++|+-
T Consensus 148 i~~Av~~i~~~G~~~~~i~llhC-~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt---~G~~~~~aAvalGA~iIEk 222 (329)
T TIGR03569 148 IEAAVGVLRDAGTPDSNITLLHC-TTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHT---LGIEAPIAAVALGATVIEK 222 (329)
T ss_pred HHHHHHHHHHcCCCcCcEEEEEE-CCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCC---ccHHHHHHHHHcCCCEEEe
Confidence 99999999999975 2444 5 345556655433 3788888886 479985443 3467789999999998854
No 260
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=93.38 E-value=3.1 Score=41.83 Aligned_cols=51 Identities=22% Similarity=0.194 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369 241 LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (426)
Q Consensus 241 l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l 296 (426)
.+.+.++++.+++.|+.+.++++ +|.|.. +.+.+.+.++.+.+++++.|.+
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI--~GlPge---t~e~~~~t~~~l~~l~~d~i~i 212 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI--LGLPGE---DREEMMETAKIVSLLDVDGIKI 212 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE--ECCCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence 45567888899999999887776 677754 4688888899999999987774
No 261
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=93.37 E-value=1.5 Score=44.07 Aligned_cols=135 Identities=12% Similarity=0.179 Sum_probs=85.4
Q ss_pred hHHHHHHcCCCEEEEec-cCChHHHhhhc-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369 206 GFEAAIAAGAKEVAIFA-SASEAFSKSNI-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 283 (426)
Q Consensus 206 di~~a~~~Gv~~V~i~~-~~Sd~~~~~~~-~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~ 283 (426)
..+.+.++|.+-+.+.= .++-.+-.--. -.+.++.++.+.++++. -.++|.+.+- .+--++..+.+.+
T Consensus 25 SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~---~~iPviaD~d-------~GyG~~~~v~~tv 94 (285)
T TIGR02317 25 AALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRV---TDLPLLVDAD-------TGFGEAFNVARTV 94 (285)
T ss_pred HHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc---cCCCEEEECC-------CCCCCHHHHHHHH
Confidence 34556667888776641 11110000001 13677888877766544 3677775443 3333588999999
Q ss_pred HHHHhCCCCEEEEcCCCC-----------CCCHHHHHHHHHHHHHhcCCceEEEEeC------CCcCcHHHHHHHHHHcC
Q 014369 284 KELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVVPVEKLAVHLH------DTYGQSLPNILISLQMG 346 (426)
Q Consensus 284 ~~l~~~Gad~I~l~DT~G-----------~~~P~~v~~li~~l~~~~p~~~i~~H~H------Nd~GlA~ANaLaAl~aG 346 (426)
+.+.++|+..|.|-|.++ +..++++...|++.++...+..+-+=.- ..+--|+.-+.+..++|
T Consensus 95 ~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AG 174 (285)
T TIGR02317 95 REMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAG 174 (285)
T ss_pred HHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcC
Confidence 999999999999999873 3456677777777776543222333222 23446778888889999
Q ss_pred CCEE
Q 014369 347 ISTV 350 (426)
Q Consensus 347 a~~V 350 (426)
||.|
T Consensus 175 AD~v 178 (285)
T TIGR02317 175 ADMI 178 (285)
T ss_pred CCEE
Confidence 9966
No 262
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=93.36 E-value=2.6 Score=42.22 Aligned_cols=68 Identities=18% Similarity=0.100 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 014369 277 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG 356 (426)
Q Consensus 277 ~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~G 356 (426)
.++.+ ++.|.++|+|.| |-.-..+| ..+++..+|..+ ..+|-.-+-| +..++.+++.||+.|-+|..|
T Consensus 77 gh~~E-a~~L~~~GvDiI---DeTe~lrP--ade~~~~~K~~f-~vpfmad~~~-----l~EAlrai~~GadmI~Tt~e~ 144 (287)
T TIGR00343 77 GHFVE-AQILEALGVDYI---DESEVLTP--ADWTFHIDKKKF-KVPFVCGARD-----LGEALRRINEGAAMIRTKGEA 144 (287)
T ss_pred cHHHH-HHHHHHcCCCEE---EccCCCCc--HHHHHHHHHHHc-CCCEEccCCC-----HHHHHHHHHCCCCEEeccccC
Confidence 34444 788999999999 88889999 688899999888 3344444333 567889999999999999875
No 263
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=93.30 E-value=0.45 Score=44.88 Aligned_cols=90 Identities=18% Similarity=0.290 Sum_probs=59.1
Q ss_pred HHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCC
Q 014369 282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCP 361 (426)
Q Consensus 282 ~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP 361 (426)
-++.+.++|++.|.| |......|..+.++++.+++++ . .+-.-+- -+..++.|.++|+|.|-+|+.|+=+
T Consensus 56 ev~~l~~aGadIIAl-DaT~R~Rp~~l~~li~~i~~~~-~-l~MADis-----t~ee~~~A~~~G~D~I~TTLsGYT~-- 125 (192)
T PF04131_consen 56 EVDALAEAGADIIAL-DATDRPRPETLEELIREIKEKY-Q-LVMADIS-----TLEEAINAAELGFDIIGTTLSGYTP-- 125 (192)
T ss_dssp HHHHHHHCT-SEEEE-E-SSSS-SS-HHHHHHHHHHCT-S-EEEEE-S-----SHHHHHHHHHTT-SEEE-TTTTSST--
T ss_pred HHHHHHHcCCCEEEE-ecCCCCCCcCHHHHHHHHHHhC-c-EEeeecC-----CHHHHHHHHHcCCCEEEcccccCCC--
Confidence 356677899999988 6667778899999999999987 2 2333332 2688999999999999999999864
Q ss_pred CCCCCCCcccHHHHHHHHHhCCC
Q 014369 362 YAKGASGNVATEDVVYMLSGLGV 384 (426)
Q Consensus 362 ~a~graGNa~lEevv~~L~~lG~ 384 (426)
+.++ ..|=-+++..|...++
T Consensus 126 ~t~~---~~pD~~lv~~l~~~~~ 145 (192)
T PF04131_consen 126 YTKG---DGPDFELVRELVQADV 145 (192)
T ss_dssp TSTT---SSHHHHHHHHHHHTTS
T ss_pred CCCC---CCCCHHHHHHHHhCCC
Confidence 3333 3333344445554443
No 264
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=93.29 E-value=1.5 Score=43.52 Aligned_cols=128 Identities=20% Similarity=0.220 Sum_probs=83.3
Q ss_pred hHHHHHHcCCCEEEEeccC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC--CCCHHHHHHH
Q 014369 206 GFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG--AIPPSKVAYV 282 (426)
Q Consensus 206 di~~a~~~Gv~~V~i~~~~-Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~--r~~~~~l~~~ 282 (426)
.+|.|+..|++-|.+.+.+ |+ +-.+.++.+.++++.|.++|+.+.. .++--|.-+.. -.+++.+...
T Consensus 102 ~ve~ai~lgadAV~~~Vy~Gse---------~e~~~i~~~~~v~~~a~~~Gmp~v~-~~YpRg~~~~~~~~~d~~~v~~a 171 (265)
T COG1830 102 TVEDAIRLGADAVGATVYVGSE---------TEREMIENISQVVEDAHELGMPLVA-WAYPRGPAIKDEYHRDADLVGYA 171 (265)
T ss_pred eHHHHHhCCCcEEEEEEecCCc---------chHHHHHHHHHHHHHHHHcCCceEE-EEeccCCcccccccccHHHHHHH
Confidence 5788999999865544321 11 1247899999999999999998763 23323322212 3678899999
Q ss_pred HHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeC---CCcCcHHHHHHHHHHcCCCEEe
Q 014369 283 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH---DTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 283 ~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~H---Nd~GlA~ANaLaAl~aGa~~VD 351 (426)
++...++|+|.|-..=| ..|+.+++.++.- | .++-+-+= ++.--.+.-.-.|+++|+..+.
T Consensus 172 aRlaaelGADIiK~~yt---g~~e~F~~vv~~~----~-vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~ 235 (265)
T COG1830 172 ARLAAELGADIIKTKYT---GDPESFRRVVAAC----G-VPVVIAGGPKTETEREFLEMVTAAIEAGAMGVA 235 (265)
T ss_pred HHHHHHhcCCeEeecCC---CChHHHHHHHHhC----C-CCEEEeCCCCCCChHHHHHHHHHHHHccCcchh
Confidence 99999999998875433 2345555555543 3 23333221 2445567777888888887654
No 265
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.28 E-value=2.7 Score=43.15 Aligned_cols=139 Identities=19% Similarity=0.084 Sum_probs=80.7
Q ss_pred HHHHHHcCCCEEEEecc--------CChHH--HhhhcCCCHHHHHHHHHHHHHHHHhc-C------CcEEEEEEeeecCC
Q 014369 207 FEAAIAAGAKEVAIFAS--------ASEAF--SKSNINCSIEDSLVRYRAVAHAAKVL-S------IPVRGYVSCVVGCP 269 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~--------~Sd~~--~~~~~~~s~~e~l~~~~~~v~~Ak~~-G------~~v~~~v~~~fg~p 269 (426)
.++|.++|.|.|.|... +|+.. +...+|-+.++=...+.++++.+|+. | +.|.+-++..- .
T Consensus 150 A~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~--~ 227 (353)
T cd04735 150 TRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEE--P 227 (353)
T ss_pred HHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECccc--c
Confidence 35667899999888642 34433 23447778887777777888777764 4 33433343210 0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCC----CCCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHH
Q 014369 270 VEGAIPPSKVAYVAKELHDMGCFEISLGDTI----GVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQ 344 (426)
Q Consensus 270 d~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~----G~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~ 344 (426)
..+-.++++..++++.+.++|+|.|.+.-.. ....|..-..+++.+++.+. .++|...+- .- -...+..+++
T Consensus 228 ~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Gg--i~-t~e~ae~~l~ 304 (353)
T cd04735 228 EEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGS--IN-TPDDALEALE 304 (353)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECC--CC-CHHHHHHHHH
Confidence 1223567888999999999999999885311 01111112345566666552 334444332 11 2355666777
Q ss_pred cCCCEE
Q 014369 345 MGISTV 350 (426)
Q Consensus 345 aGa~~V 350 (426)
.|||.|
T Consensus 305 ~gaD~V 310 (353)
T cd04735 305 TGADLV 310 (353)
T ss_pred cCCChH
Confidence 787654
No 266
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=93.26 E-value=6.6 Score=41.10 Aligned_cols=142 Identities=13% Similarity=0.052 Sum_probs=83.0
Q ss_pred CCCHHHHHHHHHHHHhC-CCCeEEEecCCCCCccccccC---HHHHHHHhHh-cC--CCcEEEEeC----ChhhHHHHHH
Q 014369 144 TVPTGVKVELIRRLVSS-GLPVVEATSFVSPKWVPQLAD---ARDVMEAVRD-LE--GARLPVLTP----NLKGFEAAIA 212 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~-Gv~~IEvG~~~s~~~~p~~~D---~~~v~~~i~~-~~--~~~l~~l~~----~~~di~~a~~ 212 (426)
.++.++-.++++.+.+. |++.+.+.+... .|-+.. ..++++.+++ .. ++.+...+- +.+-++...+
T Consensus 47 ~ms~e~~~~~i~~~~~~~~~~~v~i~f~GG---EPlL~~~~~~~~~~~~~~~~~~~~~i~~~i~TNG~ll~~e~~~~l~~ 123 (412)
T PRK13745 47 VMSDELLEKFIKEYINSQTMPQVLFTWHGG---ETLMRPLSFYKKALELQKKYARGRQIDNCIQTNGTLLTDEWCEFFRE 123 (412)
T ss_pred CCCHHHHHHHHHHHHHcCCCCeEEEEEEcc---ccCCCcHHHHHHHHHHHHHHcCCCceEEEEeecCEeCCHHHHHHHHH
Confidence 47888888888887764 778888876432 233322 2223344332 22 233333332 3445666677
Q ss_pred cCCCEEEEeccCC-hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 014369 213 AGAKEVAIFASAS-EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291 (426)
Q Consensus 213 ~Gv~~V~i~~~~S-d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Ga 291 (426)
.++ .|.|.+-.. +.|........-...++++.+.++.++++|+.+. +.+++ ++...+.+.++++.+.+.|+
T Consensus 124 ~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~--i~~vv-----~~~n~~~~~e~~~~~~~lg~ 195 (412)
T PRK13745 124 NNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWN--AMAVV-----NDFNADYPLDFYHFFKELDC 195 (412)
T ss_pred cCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEE--EEEEE-----cCCccccHHHHHHHHHHcCC
Confidence 785 677765332 3343322111112467777788888899998765 33334 23445667778888889999
Q ss_pred CEEEE
Q 014369 292 FEISL 296 (426)
Q Consensus 292 d~I~l 296 (426)
+.+.+
T Consensus 196 ~~~~~ 200 (412)
T PRK13745 196 HYIQF 200 (412)
T ss_pred CeEEE
Confidence 87765
No 267
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=93.19 E-value=11 Score=38.60 Aligned_cols=181 Identities=12% Similarity=0.095 Sum_probs=108.4
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEecCC---CCCccccccCHHHHHHHhHh---cCCCcEEEEeCChhhHHHHHHcCCCEEE
Q 014369 146 PTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRD---LEGARLPVLTPNLKGFEAAIAAGAKEVA 219 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~~~~~di~~a~~~Gv~~V~ 219 (426)
+.++.+++|+.|.++|...+-.|.|- +|.....+ .++-++.++. -.++.+..=..+..+++.+.+. ++.+.
T Consensus 105 s~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~--g~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~-vd~lq 181 (335)
T PRK08673 105 SEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGL--GEEGLKLLAEAREETGLPIVTEVMDPRDVELVAEY-VDILQ 181 (335)
T ss_pred CHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccc--cHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh-CCeEE
Confidence 78888999999999999977766542 22111111 1223333332 2344444333567888888777 88888
Q ss_pred EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299 (426)
Q Consensus 220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT 299 (426)
|.... +.- .++++++-+.|.+|- ++. ....+++++...++.+...|-..|.|+.-
T Consensus 182 IgAr~----------~~N-------~~LL~~va~~~kPVi--Lk~------G~~~ti~E~l~A~e~i~~~GN~~viL~er 236 (335)
T PRK08673 182 IGARN----------MQN-------FDLLKEVGKTNKPVL--LKR------GMSATIEEWLMAAEYILAEGNPNVILCER 236 (335)
T ss_pred ECccc----------ccC-------HHHHHHHHcCCCcEE--EeC------CCCCCHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 86331 111 145556667788876 331 11236888989999999999988888873
Q ss_pred -C-CC-CCHHHHHH--HHHHHHHhcCCceE-EEEeCC--CcCcHHHHHHHHHHcCCC--EEeeccc
Q 014369 300 -I-GV-GTPGTVVP--MLEAVMAVVPVEKL-AVHLHD--TYGQSLPNILISLQMGIS--TVDCSVA 355 (426)
Q Consensus 300 -~-G~-~~P~~v~~--li~~l~~~~p~~~i-~~H~HN--d~GlA~ANaLaAl~aGa~--~VD~Sv~ 355 (426)
+ .+ -.|....+ .+..+++.++ .++ ..=.|- ..-+-..-+++|+.+||+ .|+.-..
T Consensus 237 G~~tf~~~~~~~ldl~ai~~lk~~~~-lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~ 301 (335)
T PRK08673 237 GIRTFETATRNTLDLSAVPVIKKLTH-LPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPD 301 (335)
T ss_pred CCCCCCCcChhhhhHHHHHHHHHhcC-CCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCC
Confidence 1 22 12233322 3556666554 244 443333 233445779999999999 7765443
No 268
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=93.18 E-value=3.9 Score=43.51 Aligned_cols=140 Identities=12% Similarity=0.098 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEec---CCCCCccccccCHHHHHHHhHhcCC---CcEEEEeCC---hhhHHHHHHcC
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATS---FVSPKWVPQLADARDVMEAVRDLEG---ARLPVLTPN---LKGFEAAIAAG 214 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~---~~s~~~~p~~~D~~~v~~~i~~~~~---~~l~~l~~~---~~di~~a~~~G 214 (426)
..+.+..++-++.|.+.|++.|-+.. ..... ...+..++++.+...++ +++....|. .+-++...++|
T Consensus 182 sr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~---~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~ 258 (449)
T PRK14332 182 SRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKE---QSTDFAGLIQMLLDETTIERIRFTSPHPKDFPDHLLSLMAKNP 258 (449)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEecccCCcccC---CcccHHHHHHHHhcCCCcceEEEECCCcccCCHHHHHHHHhCC
Confidence 56889999999999999998887642 11111 11234444444433332 233322232 23356666777
Q ss_pred --CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369 215 --AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (426)
Q Consensus 215 --v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~ 289 (426)
...+++.+ +.|+.-++ .+|+.. ..+.+.++++.+++. ++.+..+++ +|.|..+ .+.+.+..+.+.+.
T Consensus 259 ~~~~~l~lgvQSgsd~vLk-~m~R~~--t~~~~~~~i~~lr~~~p~i~i~td~I--vGfPgET---~edf~~tl~~v~~l 330 (449)
T PRK14332 259 RFCPNIHLPLQAGNTRVLE-EMKRSY--SKEEFLDVVKEIRNIVPDVGITTDII--VGFPNET---EEEFEDTLAVVREV 330 (449)
T ss_pred CccceEEECCCcCCHHHHH-hhCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEE--eeCCCCC---HHHHHHHHHHHHhC
Confidence 67888886 45554443 344431 244556777777776 555665555 6778764 56777777777888
Q ss_pred CCCEE
Q 014369 290 GCFEI 294 (426)
Q Consensus 290 Gad~I 294 (426)
+.+.+
T Consensus 331 ~~~~~ 335 (449)
T PRK14332 331 QFDMA 335 (449)
T ss_pred CCCEE
Confidence 87755
No 269
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=93.16 E-value=7.1 Score=38.16 Aligned_cols=137 Identities=18% Similarity=0.142 Sum_probs=82.9
Q ss_pred CcEEEEe-CChhhHHHHHHcCCCEEEEeccCChHHHhhhc------CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeec
Q 014369 195 ARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNI------NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG 267 (426)
Q Consensus 195 ~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~------~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg 267 (426)
-.+.+++ .+.-..+.+.++|++.|.+.-+.. ...+ ..+.++.+..++.+.+.++. ..|.+.
T Consensus 12 ~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~----a~~~G~pD~~~vtl~em~~~~~~I~r~~~~--~pviaD------ 79 (240)
T cd06556 12 ERFATLTAYDYSMAKQFADAGLNVMLVGDSQG----MTVAGYDDTLPYPVNDVPYHVRAVRRGAPL--ALIVAD------ 79 (240)
T ss_pred CeEEEecCCCHHHHHHHHHcCCCEEEEChHHH----HHhcCCCCCCCcCHHHHHHHHHHHHhhCCC--CCEEEe------
Confidence 4444443 244455667778999888763321 2222 24677777777666554431 344432
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCC------CcC--------
Q 014369 268 CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD------TYG-------- 333 (426)
Q Consensus 268 ~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HN------d~G-------- 333 (426)
.|..+-.+++.+.+.++++.++|++.|.|-|.. ++.+.++++++.- ..|-.|+=- +.|
T Consensus 80 ~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~------~~~~~i~ai~~a~--i~ViaRtd~~pq~~~~~gg~~~~~~~ 151 (240)
T cd06556 80 LPFGAYGAPTAAFELAKTFMRAGAAGVKIEGGE------WHIETLQMLTAAA--VPVIAHTGLTPQSVNTSGGDEGQYRG 151 (240)
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH------HHHHHHHHHHHcC--CeEEEEeCCchhhhhccCCceeeccC
Confidence 344433467899999999999999999999973 4555677776642 234444322 111
Q ss_pred -----cHHHHHHHHHHcCCCEEe
Q 014369 334 -----QSLPNILISLQMGISTVD 351 (426)
Q Consensus 334 -----lA~ANaLaAl~aGa~~VD 351 (426)
-++.-+.+-.++||+.|=
T Consensus 152 ~~~~~~ai~Ra~ay~~AGAd~i~ 174 (240)
T cd06556 152 DEAGEQLIADALAYAPAGADLIV 174 (240)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEE
Confidence 335556666788888663
No 270
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=93.15 E-value=11 Score=38.25 Aligned_cols=158 Identities=13% Similarity=0.082 Sum_probs=98.0
Q ss_pred CCCHHHHHHHHHHHHhC-CCCeEEEecCCCCCccccc---cCHHHHHHHhHhcCCCc---EEE----EeC---ChhhHHH
Q 014369 144 TVPTGVKVELIRRLVSS-GLPVVEATSFVSPKWVPQL---ADARDVMEAVRDLEGAR---LPV----LTP---NLKGFEA 209 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~-Gv~~IEvG~~~s~~~~p~~---~D~~~v~~~i~~~~~~~---l~~----l~~---~~~di~~ 209 (426)
.++.++..++++.|.+. ||..|-++-. . |-+ .+..++++.++.++..+ +.. ..+ +.+-++.
T Consensus 118 ~l~~~e~~~~i~~i~~~~~I~~VilSGG-D----Pl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~ 192 (321)
T TIGR03822 118 VLSPAELDAAFAYIADHPEIWEVILTGG-D----PLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAA 192 (321)
T ss_pred cCCHHHHHHHHHHHHhCCCccEEEEeCC-C----cccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHH
Confidence 46778878888888754 8887776431 1 212 13345566666555442 221 112 1234566
Q ss_pred HHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369 210 AIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (426)
Q Consensus 210 a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~ 289 (426)
..++|.. +.|.+..+. ..+..+.+.++++.+++.|+.+.......=| --.+.+.+.++.+.+.++
T Consensus 193 L~~~g~~-v~i~l~~~h----------~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~g----vNd~~~~l~~l~~~l~~~ 257 (321)
T TIGR03822 193 LKTSGKT-VYVALHANH----------ARELTAEARAACARLIDAGIPMVSQSVLLRG----VNDDPETLAALMRAFVEC 257 (321)
T ss_pred HHHcCCc-EEEEecCCC----------hhhcCHHHHHHHHHHHHcCCEEEEEeeEeCC----CCCCHHHHHHHHHHHHhc
Confidence 6678843 555544322 1233567788999999999987643322111 124678899999999999
Q ss_pred CCC--EEEEcCCC-CC----CCHHHHHHHHHHHHHhcCC
Q 014369 290 GCF--EISLGDTI-GV----GTPGTVVPMLEAVMAVVPV 321 (426)
Q Consensus 290 Gad--~I~l~DT~-G~----~~P~~v~~li~~l~~~~p~ 321 (426)
|+. .+...|-+ |. ..+++..++++.+++.+++
T Consensus 258 gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~g 296 (321)
T TIGR03822 258 RIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGRISG 296 (321)
T ss_pred CCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHhCCC
Confidence 986 55666766 32 4567889999999998875
No 271
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=93.12 E-value=2 Score=43.72 Aligned_cols=105 Identities=18% Similarity=0.151 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--------cCCCCCCCHHH
Q 014369 236 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL--------GDTIGVGTPGT 307 (426)
Q Consensus 236 s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l--------~DT~G~~~P~~ 307 (426)
..++.++.+.++. ++.+..+.++|.. .+++.+.++++.+.++|+|.|.| .+..|...+..
T Consensus 85 g~d~~~~~i~~~~---~~~~~pvi~sI~g---------~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~ 152 (334)
T PRK07565 85 GPEEYLELIRRAK---EAVDIPVIASLNG---------SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQR 152 (334)
T ss_pred CHHHHHHHHHHHH---HhcCCcEEEEecc---------CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHH
Confidence 3455555444322 2235666655531 34678889999999999998887 23345555566
Q ss_pred HHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369 308 VVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 353 (426)
Q Consensus 308 v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S 353 (426)
+.++++.+++... .||.+-.=-+...-..-+.++.++|++.|..+
T Consensus 153 ~~eil~~v~~~~~-iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 153 YLDILRAVKSAVS-IPVAVKLSPYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred HHHHHHHHHhccC-CcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 8899999998764 35666654343322344445568999988653
No 272
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=93.06 E-value=6.7 Score=40.25 Aligned_cols=160 Identities=12% Similarity=0.057 Sum_probs=97.3
Q ss_pred HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-c--CCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-L--SIPVRGYVSCVVGCPVEGAIPPSKVAYVA 283 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~-~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~ 283 (426)
++.+.+-|+..+-+.++....+...+-+.+.++.++.+.+.++.+++ . |+.++.-++. + ...+++...+.+
T Consensus 76 ~~d~~~dgV~Y~Eir~~P~~~~~~~~~g~~~~~v~~av~~~~~~~~~~~~~~i~v~lI~~~-----~-R~~~~e~~~e~~ 149 (345)
T cd01321 76 LEELYEDNVQYVELRSSFSPLYDLDGREYDYEETVQLLEEVVEKFKKTHPDFIGLKIIYAT-----L-RNFNDSEIKESM 149 (345)
T ss_pred HHHHHHcCCEEEEEeecchHHHHccCCCCCHHHHHHHHHHHHHHHHHhCCCCceEEEEEEe-----c-CCCCHHHHHHHH
Confidence 45667779887777765443343334578999999998877777643 3 4555533332 1 123566655655
Q ss_pred HHHHhC---C---CCEEEEcCCCCCC-CHHHHHHHHHHHHHhcCCceEEEEeCCCcC--cH-HHHHHHHHHcCCCEEeec
Q 014369 284 KELHDM---G---CFEISLGDTIGVG-TPGTVVPMLEAVMAVVPVEKLAVHLHDTYG--QS-LPNILISLQMGISTVDCS 353 (426)
Q Consensus 284 ~~l~~~---G---ad~I~l~DT~G~~-~P~~v~~li~~l~~~~p~~~i~~H~HNd~G--lA-~ANaLaAl~aGa~~VD~S 353 (426)
+.+.++ . +-.|-|+-.-... .|..+...++..++.-++.++.+|+=..-+ .. ..|...|+..|+++|.=.
T Consensus 150 ~~a~~~~~~~~~~VvGidL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al~lg~~RIGHG 229 (345)
T cd01321 150 EQCLNLKKKFPDFIAGFDLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDALLLNTKRIGHG 229 (345)
T ss_pred HHHHHHHHhCCCeEEEEecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHHHhCCCcCccc
Confidence 555443 1 2233333222122 467888888888876444679999976653 32 358888889999998544
Q ss_pred ccCCCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369 354 VAGLGGCPYAKGASGNVATEDVVYMLSGLGVE 385 (426)
Q Consensus 354 v~GlGecP~a~graGNa~lEevv~~L~~lG~~ 385 (426)
+.-+- -++++..|+..++.
T Consensus 230 ~~~~~-------------dp~ll~~l~~~~I~ 248 (345)
T cd01321 230 FALPK-------------HPLLMDLVKKKNIA 248 (345)
T ss_pred cccCc-------------CHHHHHHHHHcCCe
Confidence 43221 16777788765553
No 273
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=93.05 E-value=2 Score=44.35 Aligned_cols=107 Identities=11% Similarity=0.088 Sum_probs=70.9
Q ss_pred HHHHHHhHhcCCCcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-
Q 014369 183 RDVMEAVRDLEGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP- 257 (426)
Q Consensus 183 ~~v~~~i~~~~~~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~- 257 (426)
.++++.++..+...+++-+ | +.+.++...++|+.+|.+.+..-+-.....+|+.. ..+.+.++++.+++.|+.
T Consensus 78 ~~ll~~i~~~~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~ 155 (370)
T PRK06294 78 QDILKTLEAPHATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSN 155 (370)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCe
Confidence 3444444433455555544 3 24567888899999999987443333344455422 244456778889999996
Q ss_pred EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369 258 VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (426)
Q Consensus 258 v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l 296 (426)
|.+.++ +|.|.. +.+.+.+-++.+.+++++.|.+
T Consensus 156 v~~Dli--~GlPgq---t~~~~~~~l~~~~~l~~~~is~ 189 (370)
T PRK06294 156 LSIDLI--YGLPTQ---SLSDFIVDLHQAITLPITHISL 189 (370)
T ss_pred EEEEee--cCCCCC---CHHHHHHHHHHHHccCCCeEEE
Confidence 776665 677754 5778888888999999987765
No 274
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=93.03 E-value=1.4 Score=44.15 Aligned_cols=101 Identities=14% Similarity=0.072 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE-EcCC-CCCCCHHHHHHHHHHHHHhcCC
Q 014369 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS-LGDT-IGVGTPGTVVPMLEAVMAVVPV 321 (426)
Q Consensus 244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~-l~DT-~G~~~P~~v~~li~~l~~~~p~ 321 (426)
++++++.|++.|+-|-+ |.+ .+.+.+..+++++.+.+...|- +... .-.+....+..++..+.+....
T Consensus 6 ~k~iL~~A~~~~yAV~A-----fN~-----~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~V 75 (286)
T PRK12738 6 TKYLLQDAQANGYAVPA-----FNI-----HNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNM 75 (286)
T ss_pred HHHHHHHHHHCCceEEE-----EEe-----CCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCC
Confidence 56788899999987742 322 3578899999999999987444 3322 2234456678888888887753
Q ss_pred ceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCC
Q 014369 322 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGL 357 (426)
Q Consensus 322 ~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~Gl 357 (426)
|+.+| =|.|.....+..|+++|.+ .+|+|-..+
T Consensus 76 -PValH--LDHg~~~e~i~~ai~~GFtSVM~DgS~lp~ 110 (286)
T PRK12738 76 -PLALH--LDHHESLDDIRRKVHAGVRSAMIDGSHFPF 110 (286)
T ss_pred -CEEEE--CCCCCCHHHHHHHHHcCCCeEeecCCCCCH
Confidence 56655 5788889999999999998 668886644
No 275
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=92.98 E-value=9.4 Score=37.05 Aligned_cols=204 Identities=19% Similarity=0.144 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHhCCCCeEEEecCC-CCCccccccCHHHHHHHhHhcCCCcEEEE--eCChhhHHHHHHcCCCEEEEecc
Q 014369 147 TGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDLEGARLPVL--TPNLKGFEAAIAAGAKEVAIFAS 223 (426)
Q Consensus 147 ~~~ki~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~~~~di~~a~~~Gv~~V~i~~~ 223 (426)
..+-.++++.+.+.|++.|=+--.. ....-+ . ..++.+.+++..++++.+- +++.++++.+++.|++.|.+...
T Consensus 29 ~~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~--~-~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~ 105 (253)
T PRK02083 29 AGDPVELAKRYNEEGADELVFLDITASSEGRD--T-MLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSA 105 (253)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCcccccCc--c-hHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChh
Confidence 3456789999999999877765322 111111 1 2334444443334444432 36889999999999999866522
Q ss_pred CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEEe-----------eecCCCCCCCCHHHHHHHHHHHHhCCC
Q 014369 224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS-IPVRGYVSC-----------VVGCPVEGAIPPSKVAYVAKELHDMGC 291 (426)
Q Consensus 224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G-~~v~~~v~~-----------~fg~pd~~r~~~~~l~~~~~~l~~~Ga 291 (426)
. + +..+.+.++. +..| -.+.+.+-+ ....+. ..+...+.++++.+.+.|+
T Consensus 106 ~---l----------~~p~~~~ei~---~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~g~ 167 (253)
T PRK02083 106 A---V----------ANPELISEAA---DRFGSQCIVVAIDAKRDPEPGRWEVYTHGGR--KPTGLDAVEWAKEVEELGA 167 (253)
T ss_pred H---h----------hCcHHHHHHH---HHcCCCCEEEEEEeccCCCCCCEEEEEcCCc--eecCCCHHHHHHHHHHcCC
Confidence 1 0 0112222222 2233 122222210 000000 0111244567788889999
Q ss_pred CEEEEcC--CCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHH-cCCCEE-eecccCCCCCCCCCCCC
Q 014369 292 FEISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-MGISTV-DCSVAGLGGCPYAKGAS 367 (426)
Q Consensus 292 d~I~l~D--T~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~-aGa~~V-D~Sv~GlGecP~a~gra 367 (426)
+.|.+-| ..|...=.. .++++.+++..+. |+-.-+.-. ...-...+++ .||+.| -++.. -.
T Consensus 168 ~~ii~~~i~~~g~~~g~d-~~~i~~~~~~~~i-pvia~GGv~---s~~d~~~~~~~~G~~gvivg~al----------~~ 232 (253)
T PRK02083 168 GEILLTSMDRDGTKNGYD-LELTRAVSDAVNV-PVIASGGAG---NLEHFVEAFTEGGADAALAASIF----------HF 232 (253)
T ss_pred CEEEEcCCcCCCCCCCcC-HHHHHHHHhhCCC-CEEEECCCC---CHHHHHHHHHhCCccEEeEhHHH----------Hc
Confidence 9998833 444332222 4667777776653 455443211 1123334554 477633 33332 25
Q ss_pred CcccHHHHHHHHHhCCCCC
Q 014369 368 GNVATEDVVYMLSGLGVET 386 (426)
Q Consensus 368 GNa~lEevv~~L~~lG~~~ 386 (426)
|..+++++...|++.|+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 233 GEITIGELKAYLAEQGIPV 251 (253)
T ss_pred CCCCHHHHHHHHHHCCCcc
Confidence 6789999999998888764
No 276
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=92.97 E-value=5.7 Score=41.68 Aligned_cols=144 Identities=14% Similarity=0.164 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecC---CC-CCccccccCHHHHHHHhHhcCCCc---EEEEeCC---hhhHHHHHHc
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSF---VS-PKWVPQLADARDVMEAVRDLEGAR---LPVLTPN---LKGFEAAIAA 213 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~---~s-~~~~p~~~D~~~v~~~i~~~~~~~---l~~l~~~---~~di~~a~~~ 213 (426)
..+.+..++-++.|.+.|++.|-+... .- .++. ......++++.+...++.. +..+.+. .+-++...++
T Consensus 167 ~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~-~~~~l~~Ll~~l~~~~g~~~i~~~~~~p~~i~~ell~~m~~~ 245 (429)
T TIGR00089 167 SRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLK-GETNLADLLRELSKIDGIERIRFGSSHPDDVTDDLIELIAEN 245 (429)
T ss_pred CCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCC-CCcCHHHHHHHHhcCCCCCEEEECCCChhhcCHHHHHHHHhC
Confidence 578888888889999999998877521 11 1110 0123456666666554432 2222232 3345666666
Q ss_pred C--CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh
Q 014369 214 G--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD 288 (426)
Q Consensus 214 G--v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G--~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~ 288 (426)
| ...+++.+ +.|+--++ .+|+. ...+.+.++++.+++.| +.+.++++ +|.|.. +++.+.+.++.+.+
T Consensus 246 ~~~~~~l~igiES~s~~vLk-~m~R~--~~~~~~~~~i~~lr~~~~~i~i~~~~I--vG~PgE---T~ed~~~tl~~i~~ 317 (429)
T TIGR00089 246 PKVCKHLHLPVQSGSDRILK-RMNRK--YTREEYLDIVEKIRAKIPDAAITTDII--VGFPGE---TEEDFEETLDLVEE 317 (429)
T ss_pred CCccCceeeccccCChHHHH-hCCCC--CCHHHHHHHHHHHHHHCCCCEEEeeEE--EECCCC---CHHHHHHHHHHHHh
Confidence 4 77788865 55664444 35553 23456678888888888 66665555 677876 46777777888888
Q ss_pred CCCCEEEE
Q 014369 289 MGCFEISL 296 (426)
Q Consensus 289 ~Gad~I~l 296 (426)
.+.+.+.+
T Consensus 318 ~~~~~~~~ 325 (429)
T TIGR00089 318 VKFDKLHS 325 (429)
T ss_pred cCCCEeec
Confidence 88876663
No 277
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=92.94 E-value=5.4 Score=42.12 Aligned_cols=144 Identities=17% Similarity=0.203 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecC---CC-CCc-cccccCHHHHHHHhHhcCCC---cEEEEeCC---hhhHHHHHH
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSF---VS-PKW-VPQLADARDVMEAVRDLEGA---RLPVLTPN---LKGFEAAIA 212 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~---~s-~~~-~p~~~D~~~v~~~i~~~~~~---~l~~l~~~---~~di~~a~~ 212 (426)
..+.+..++=++.|.+.|++.|.+.-. .. .+. -+......++++.+..+++. ++....|. .+-++...+
T Consensus 175 sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~l~~ 254 (444)
T PRK14325 175 SRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVAAIDGIERIRYTTSHPRDFTDDLIEAYAD 254 (444)
T ss_pred cCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHHc
Confidence 468888888888898999998876421 11 000 01112345666666554443 33322232 233555556
Q ss_pred cC--CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369 213 AG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH 287 (426)
Q Consensus 213 ~G--v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~ 287 (426)
.| ...+++.+ +.|+.-++ .+++. ...+.+.++++.++++ |+.+.++++ +|.|..+ .+.+.+..+.+.
T Consensus 255 ~~~~~~~l~igiqSgs~~vLk-~m~R~--~~~~~~~~~i~~lr~~~~gi~v~~~~I--vG~PgET---~ed~~~tl~~i~ 326 (444)
T PRK14325 255 LPKLVPFLHLPVQSGSDRILK-AMNRG--HTALEYKSIIRKLRAARPDIAISSDFI--VGFPGET---DEDFEATMKLIE 326 (444)
T ss_pred CCcccCceeccCCcCCHHHHH-hCCCC--CCHHHHHHHHHHHHHHCCCCEEEeeEE--EECCCCC---HHHHHHHHHHHH
Confidence 64 67888876 45554433 34443 2345667888888887 667776666 6778664 577777777777
Q ss_pred hCCCCEEE
Q 014369 288 DMGCFEIS 295 (426)
Q Consensus 288 ~~Gad~I~ 295 (426)
+.+.+.+.
T Consensus 327 ~~~~~~~~ 334 (444)
T PRK14325 327 DVGFDQSF 334 (444)
T ss_pred hcCCCeee
Confidence 88877654
No 278
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=92.91 E-value=2.3 Score=43.20 Aligned_cols=104 Identities=19% Similarity=0.197 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--------cCCCCCCCHHH
Q 014369 236 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL--------GDTIGVGTPGT 307 (426)
Q Consensus 236 s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l--------~DT~G~~~P~~ 307 (426)
..+..++++.+.. ++.+..+.++|. ..+++.+.++++.+.++|+|.|.| ++-.|...++.
T Consensus 83 g~~~~~~~i~~~~---~~~~~pvi~si~---------g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~ 150 (325)
T cd04739 83 GPEEYLELIRRAK---RAVSIPVIASLN---------GVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQR 150 (325)
T ss_pred CHHHHHHHHHHHH---hccCCeEEEEeC---------CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHH
Confidence 3445555444321 233566665552 135688889999999999986654 13334444577
Q ss_pred HHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369 308 VVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 352 (426)
Q Consensus 308 v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~ 352 (426)
+.++++.+++... .||.+-.=-++..-..-+.++.++||+.|..
T Consensus 151 ~~eiv~~v~~~~~-iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~ 194 (325)
T cd04739 151 YLDILRAVKSAVT-IPVAVKLSPFFSALAHMAKQLDAAGADGLVL 194 (325)
T ss_pred HHHHHHHHHhccC-CCEEEEcCCCccCHHHHHHHHHHcCCCeEEE
Confidence 8899999998764 3566655444454555566678899997754
No 279
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=92.90 E-value=7.4 Score=40.01 Aligned_cols=107 Identities=7% Similarity=0.044 Sum_probs=70.3
Q ss_pred HHHHHHhHh-c-CCCcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC
Q 014369 183 RDVMEAVRD-L-EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI 256 (426)
Q Consensus 183 ~~v~~~i~~-~-~~~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~ 256 (426)
+++++.+++ . ++..+++-+ | +.+.++...++|+.+|.+.+..-+-..-..+|+. ...+++.++++.+++.|+
T Consensus 76 ~~ll~~i~~~~~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~--~~~~~~~~ai~~lr~~G~ 153 (353)
T PRK05904 76 DILLSTIKPYVDNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRT--HTIQDSKEAINLLHKNGI 153 (353)
T ss_pred HHHHHHHHHhcCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCC
Confidence 344444443 2 334555544 3 2466788889999999998744433334445553 234556688889999998
Q ss_pred c-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369 257 P-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (426)
Q Consensus 257 ~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l 296 (426)
. +.+.++ +|.|.. +.+.+.+.++.+.+++++.|.+
T Consensus 154 ~~v~~dlI--~GlPgq---t~e~~~~tl~~~~~l~p~~is~ 189 (353)
T PRK05904 154 YNISCDFL--YCLPIL---KLKDLDEVFNFILKHKINHISF 189 (353)
T ss_pred CcEEEEEe--ecCCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence 6 776666 666753 5678888888888999876643
No 280
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=92.82 E-value=5.4 Score=39.56 Aligned_cols=141 Identities=21% Similarity=0.204 Sum_probs=90.8
Q ss_pred CCCCHHHHHHHHHHHHhCC-CCeEEEecCCCCCccccc-cCHHHHHHHhHhcCCCcEEEEeC----ChhhHHHHHHcCCC
Q 014369 143 NTVPTGVKVELIRRLVSSG-LPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTP----NLKGFEAAIAAGAK 216 (426)
Q Consensus 143 ~~f~~~~ki~I~~~L~~~G-v~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~----~~~di~~a~~~Gv~ 216 (426)
..+++++..++...+.+.| +..+-++.. .|-+ .|..++++.++...+..+...+. ..+-++...++|++
T Consensus 46 ~el~~~~~~~~~~~~~~~g~~~~v~~~gG-----EPll~~d~~ei~~~~~~~~~~~~~~~TnG~~~~~~~~~~l~~~g~~ 120 (347)
T COG0535 46 GELSTEEDLRVIDELAELGEIPVVIFTGG-----EPLLRPDLLEIVEYARKKGGIRVSLSTNGTLLTEEVLEKLKEAGLD 120 (347)
T ss_pred cccCHHHHHHHHHHHHHcCCeeEEEEeCC-----CccccccHHHHHHHHhhcCCeEEEEeCCCccCCHHHHHHHHhcCCc
Confidence 4567777778999999999 666555431 1222 35566666666444444443332 13567777889999
Q ss_pred EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369 217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (426)
Q Consensus 217 ~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l 296 (426)
.|.|.+-..+.-. +..-...+.+++++.+.++.+++.|+.+..++.. .+...+.+.++++.+.+.|++.+.+
T Consensus 121 ~v~iSid~~~~e~-hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~v-------~~~n~~~l~~~~~~~~~~g~~~~~~ 192 (347)
T COG0535 121 YVSISLDGLDPET-HDPIRGVKGVFKRAVEAIKNLKEAGILVVINTTV-------TKINYDELPEIADLAAELGVDELNV 192 (347)
T ss_pred EEEEEecCCChhh-hhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEEEE-------ecCcHHHHHHHHHHHHHcCCCEEEE
Confidence 9999875433211 0111122456788889999999999875543332 3456788889999999999875555
No 281
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=92.81 E-value=1.4 Score=46.75 Aligned_cols=162 Identities=15% Similarity=0.122 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEE-EeCChhhHHHHHHcCCCEEEEeccCC
Q 014369 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPV-LTPNLKGFEAAIAAGAKEVAIFASAS 225 (426)
Q Consensus 148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~~S 225 (426)
+.-.+-+..|.++|++.|++-.--.. .....+.++.+++ .|++.+.+ -+-+.++.+.++++|+|.|.+.+...
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~g~-----~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G 297 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSHGH-----SIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPG 297 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCCCc-----HhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCC
Confidence 34567778999999999999652110 0112344444443 35655444 34578899999999999998865211
Q ss_pred hH-HHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 014369 226 EA-FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT 304 (426)
Q Consensus 226 d~-~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~ 304 (426)
-+ .-+...++... .+..+.++.+++++.+++|. ++.+-.++.++.+ +.++||+.+-+.-..
T Consensus 298 ~~~~t~~~~~~g~p-~~~~i~~~~~~~~~~~vpvi---------adGGi~~~~di~k----Ala~GA~~V~~G~~~---- 359 (450)
T TIGR01302 298 SICTTRIVAGVGVP-QITAVYDVAEYAAQSGIPVI---------ADGGIRYSGDIVK----ALAAGADAVMLGSLL---- 359 (450)
T ss_pred cCCccceecCCCcc-HHHHHHHHHHHHhhcCCeEE---------EeCCCCCHHHHHH----HHHcCCCEEEECchh----
Confidence 00 00111122222 24556677788888887764 2445445555443 335899999876432
Q ss_pred HHHHHHHHHHHHHhcCCceE---EEEeCCCcCcHHHHHHH
Q 014369 305 PGTVVPMLEAVMAVVPVEKL---AVHLHDTYGQSLPNILI 341 (426)
Q Consensus 305 P~~v~~li~~l~~~~p~~~i---~~H~HNd~GlA~ANaLa 341 (426)
.. -.+.|...+ +-+.-.-+|||...++.
T Consensus 360 --------a~-~~e~pg~~~~~~g~~~k~yrgm~s~~a~~ 390 (450)
T TIGR01302 360 --------AG-TTESPGEYEIINGRRYKQYRGMGSLGAMT 390 (450)
T ss_pred --------hc-CCcCCCceEEECCEEEEEEeccchHHHHh
Confidence 11 123454322 23445568999766554
No 282
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=92.79 E-value=9.4 Score=36.54 Aligned_cols=198 Identities=14% Similarity=0.141 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhCCCCeEEEecCC-CCCccccccCHHHHHHHhHhcCCCcEEE--EeCChhhHHHHHHcCCCEEEEeccC
Q 014369 148 GVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIFASA 224 (426)
Q Consensus 148 ~~ki~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~~di~~a~~~Gv~~V~i~~~~ 224 (426)
..-+++++.+.+.|++.+.+=-.. +... ...+...+.+..+. .+..+.+ -.+..++++.++++|++.|++....
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~~--~~~~~~~i~~i~~~-~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~ 108 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGAFEG--ERKNAEAIEKIIEA-VGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAA 108 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhhhcC--CcccHHHHHHHHHH-cCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 356789999999999987653221 1100 01223333333333 2344443 2367899999999999999885321
Q ss_pred ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecCCCC--C-CC-CHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369 225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVE--G-AI-PPSKVAYVAKELHDMGCFEISLGDT 299 (426)
Q Consensus 225 Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~pd~--~-r~-~~~~l~~~~~~l~~~Gad~I~l~DT 299 (426)
- +..+.+.++++. .|. .+.+.+..- +.+.. + .. ....+.++++.+.++|++.|.+-|+
T Consensus 109 ~-------------~~~~~~~~i~~~---~g~~~i~~sid~~-~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~ 171 (241)
T PRK13585 109 V-------------ENPEIVRELSEE---FGSERVMVSLDAK-DGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNV 171 (241)
T ss_pred h-------------hChHHHHHHHHH---hCCCcEEEEEEee-CCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEee
Confidence 1 011223333333 332 222222210 00000 0 00 1124566778888999999999776
Q ss_pred --CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHH
Q 014369 300 --IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVY 377 (426)
Q Consensus 300 --~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~ 377 (426)
.|...+.. .++++.+++.++. |+.+-+.=. ...++....++||+.|-+.-.-+ .+.-.+++++.
T Consensus 172 ~~~g~~~g~~-~~~i~~i~~~~~i-Pvia~GGI~---~~~di~~~~~~Ga~gv~vgsa~~---------~~~~~~~~~~~ 237 (241)
T PRK13585 172 DVEGLLEGVN-TEPVKELVDSVDI-PVIASGGVT---TLDDLRALKEAGAAGVVVGSALY---------KGKFTLEEAIE 237 (241)
T ss_pred cCCCCcCCCC-HHHHHHHHHhCCC-CEEEeCCCC---CHHHHHHHHHcCCCEEEEEHHHh---------cCCcCHHHHHH
Confidence 55555432 3457777777653 555554322 13455566788999764432222 23345666655
Q ss_pred HH
Q 014369 378 ML 379 (426)
Q Consensus 378 ~L 379 (426)
.+
T Consensus 238 ~~ 239 (241)
T PRK13585 238 AV 239 (241)
T ss_pred Hh
Confidence 54
No 283
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=92.72 E-value=0.45 Score=46.63 Aligned_cols=155 Identities=15% Similarity=0.121 Sum_probs=94.9
Q ss_pred hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC-CCCCCCHHHHHHHH
Q 014369 205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-VEGAIPPSKVAYVA 283 (426)
Q Consensus 205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p-d~~r~~~~~l~~~~ 283 (426)
+|+=.....-+|.+-+...++-.+-+ + .+++.++.++++|+.+. +|.. .+-......+.++.
T Consensus 28 ~dlLe~ag~yID~~K~g~Gt~~l~~~--------~---~l~eki~l~~~~gV~v~------~GGtl~E~a~~q~~~~~yl 90 (244)
T PF02679_consen 28 EDLLESAGDYIDFLKFGWGTSALYPE--------E---ILKEKIDLAHSHGVYVY------PGGTLFEVAYQQGKFDEYL 90 (244)
T ss_dssp HHHHHHHGGG-SEEEE-TTGGGGSTC--------H---HHHHHHHHHHCTT-EEE------E-HHHHHHHHHTT-HHHHH
T ss_pred HHHHHHhhhhccEEEecCceeeecCH--------H---HHHHHHHHHHHcCCeEe------CCcHHHHHHHhcChHHHHH
Confidence 44444555678999998877665332 2 35688889999998876 2210 01011234566788
Q ss_pred HHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEeCC-------CcCcHHHHHHHHHHcCCCEE--eec
Q 014369 284 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV-VPVEKLAVHLHD-------TYGQSLPNILISLQMGISTV--DCS 353 (426)
Q Consensus 284 ~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~-~p~~~i~~H~HN-------d~GlA~ANaLaAl~aGa~~V--D~S 353 (426)
+.+.++|.+.|-|.|..--+.+.+-.++|+.+++. +-. .-++.-.+ |...-+-.+...++|||+.| ++-
T Consensus 91 ~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v-~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 169 (244)
T PF02679_consen 91 EECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKV-LSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEAR 169 (244)
T ss_dssp HHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEE-EEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--T
T ss_pred HHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEE-eecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence 88889999999999999999999999999999876 321 23333322 36677888999999999965 433
Q ss_pred ---ccCCCCCCCCCCCCCcccHHHHHHHHHhCC
Q 014369 354 ---VAGLGGCPYAKGASGNVATEDVVYMLSGLG 383 (426)
Q Consensus 354 ---v~GlGecP~a~graGNa~lEevv~~L~~lG 383 (426)
-.|+=+ ..|+...+.+...++.++
T Consensus 170 EsG~~Gi~~------~~g~~r~d~v~~i~~~~~ 196 (244)
T PF02679_consen 170 ESGKGGIYD------NDGEVRTDLVEKIIERLG 196 (244)
T ss_dssp TT--STTB-------TTS-B-HHHHHHHHTTS-
T ss_pred ccCCCCccC------CCCCccHHHHHHHHHhCC
Confidence 226666 689999998888887654
No 284
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=92.71 E-value=2.8 Score=44.37 Aligned_cols=146 Identities=12% Similarity=0.070 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecC-CCC--CccccccCHHHHHHHhHhcC--CCcEEEEeCC---hhhHHHHHHc--
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSF-VSP--KWVPQLADARDVMEAVRDLE--GARLPVLTPN---LKGFEAAIAA-- 213 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~-~s~--~~~p~~~D~~~v~~~i~~~~--~~~l~~l~~~---~~di~~a~~~-- 213 (426)
..+.+..++-++.|.+.|++.|-+.-. ... ...|...+..++++.+.... .+++....|. .+-++...+.
T Consensus 166 sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~~i~~ir~~~~~p~~i~~ell~~l~~~~~ 245 (440)
T PRK14334 166 SRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGASGIPRVKFTTSHPMNFTDDVIAAMAETPA 245 (440)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhcCCcEEEEccCCcccCCHHHHHHHHhcCc
Confidence 457888888888899999988876421 000 00011224566777665432 2333333232 3445666664
Q ss_pred CCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369 214 GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF 292 (426)
Q Consensus 214 Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad 292 (426)
|...+++.+ +.|+.-++ .+++.. ..+.+.++++.+++.|..+.+.....+|.|.. +.+.+.+.++.+.+++.+
T Consensus 246 g~~~l~igvQSgs~~vLk-~m~R~~--~~~~~~~~v~~lr~~~~~i~i~~d~IvG~PgE---t~ed~~~tl~~i~~l~~~ 319 (440)
T PRK14334 246 VCEYIHLPVQSGSDRVLR-RMAREY--RREKYLERIAEIREALPDVVLSTDIIVGFPGE---TEEDFQETLSLYDEVGYD 319 (440)
T ss_pred CCCeEEeccccCCHHHHH-HhCCCC--CHHHHHHHHHHHHHhCCCcEEEEeEEEECCCC---CHHHHHHHHHHHHhcCCC
Confidence 478888886 44454333 334321 23455677788888887654444445787865 467777778788888877
Q ss_pred EEE
Q 014369 293 EIS 295 (426)
Q Consensus 293 ~I~ 295 (426)
.+.
T Consensus 320 ~i~ 322 (440)
T PRK14334 320 SAY 322 (440)
T ss_pred Eee
Confidence 554
No 285
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=92.69 E-value=1.5 Score=43.77 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=71.9
Q ss_pred HHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcC-CCCCCCHHHHHHHHHHHHHhcCCc
Q 014369 245 RAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGD-TIGVGTPGTVVPMLEAVMAVVPVE 322 (426)
Q Consensus 245 ~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~D-T~G~~~P~~v~~li~~l~~~~p~~ 322 (426)
+++++.|++.++-|-+ |.+ .+.+.+..+++++.+.+.. +|.+.. +........+..++..+.+....
T Consensus 2 k~lL~~A~~~~yaV~A-----fN~-----~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~V- 70 (276)
T cd00947 2 KELLKKAREGGYAVGA-----FNI-----NNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASV- 70 (276)
T ss_pred HHHHHHHHHCCceEEE-----Eee-----CCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCC-
Confidence 4677889999987653 321 3568889999999999877 444443 33334456788888888777653
Q ss_pred eEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCC
Q 014369 323 KLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLG 358 (426)
Q Consensus 323 ~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlG 358 (426)
|+.+|. |.|.-......|+++|.+ .+|+|-..+-
T Consensus 71 PV~lHL--DH~~~~~~i~~ai~~GftSVMiD~S~l~~e 106 (276)
T cd00947 71 PVALHL--DHGSSFELIKRAIRAGFSSVMIDGSHLPFE 106 (276)
T ss_pred CEEEEC--CCCCCHHHHHHHHHhCCCEEEeCCCCCCHH
Confidence 566654 677778999999999998 6688876443
No 286
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=92.63 E-value=0.39 Score=46.74 Aligned_cols=116 Identities=18% Similarity=0.308 Sum_probs=74.6
Q ss_pred HHHHHhHhc--CCCcEEEEe-CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCC-CHHHHHHHHHHHHHHHHhcCCcEE
Q 014369 184 DVMEAVRDL--EGARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINC-SIEDSLVRYRAVAHAAKVLSIPVR 259 (426)
Q Consensus 184 ~v~~~i~~~--~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~-s~~e~l~~~~~~v~~Ak~~G~~v~ 259 (426)
.+...++.+ .+++++.+. |+.+.++.|.+.|++.|-++... +..+ ++. ..++.++++..++++|+++|+.|.
T Consensus 111 ~l~~~i~~l~~~gI~VSLFiDP~~~qi~~A~~~GAd~VELhTG~---YA~a-~~~~~~~~el~~i~~aa~~A~~lGL~Vn 186 (237)
T TIGR00559 111 KLCELVKRFHAAGIEVSLFIDADKDQISAAAEVGADRIEIHTGP---YANA-YNKKEMAEELQRIVKASVHAHSLGLKVN 186 (237)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechh---hhcC-CCchhHHHHHHHHHHHHHHHHHcCCEEe
Confidence 344444433 467777776 78899999999999999998642 1111 122 224459999999999999999886
Q ss_pred EEEEeeecCCCCCCCCHHHHHHHHHHHHhCC-CCEEEE-----cCCCCCCCHHHHHHHHHHHH
Q 014369 260 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEISL-----GDTIGVGTPGTVVPMLEAVM 316 (426)
Q Consensus 260 ~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G-ad~I~l-----~DT~G~~~P~~v~~li~~l~ 316 (426)
+ +.-.+.+.+..+++ .-+ ..+++| ++.+=++.+..|++|.+.++
T Consensus 187 A----------GHgLny~Nv~~i~~---~~~~i~EvnIGHsiia~Al~~Gl~~AV~~m~~~~~ 236 (237)
T TIGR00559 187 A----------GHGLNYHNVKYFAE---ILPYLDELNIGHAIIADAVYLGLEEAIREMRDLIK 236 (237)
T ss_pred c----------CCCCCHHhHHHHHh---CCCCceEEecCHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 2 12345566555543 223 566665 44555556666666665543
No 287
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=92.59 E-value=2.1 Score=42.86 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEcC-CCCCCCHHHHHHHHHHHHHhcCC
Q 014369 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE-ISLGD-TIGVGTPGTVVPMLEAVMAVVPV 321 (426)
Q Consensus 244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~-I~l~D-T~G~~~P~~v~~li~~l~~~~p~ 321 (426)
+.++.+.|++.++-|-+ |.+ .+.+.+..+++++.+.+... |.+.- +..++....+..++..+.+..+.
T Consensus 6 ~~~~l~~A~~~~yaV~A-----fN~-----~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~V 75 (284)
T PRK12737 6 TKNMLKKAQAEGYAVPA-----FNI-----HNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNI 75 (284)
T ss_pred HHHHHHHHHHcCceEEE-----EEe-----CCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCC
Confidence 56788899999987653 322 35789999999999999774 44433 22233445677778888777754
Q ss_pred ceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCC
Q 014369 322 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGG 359 (426)
Q Consensus 322 ~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGe 359 (426)
|+.+| =|.|.-......|+++|.+ .+|+|-..+-+
T Consensus 76 -PValH--LDH~~~~e~i~~ai~~GftSVMiDgS~lp~ee 112 (284)
T PRK12737 76 -PLALH--LDHHEDLDDIKKKVRAGIRSVMIDGSHLSFEE 112 (284)
T ss_pred -CEEEE--CCCCCCHHHHHHHHHcCCCeEEecCCCCCHHH
Confidence 56654 5777788999999999998 66988765443
No 288
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=92.57 E-value=4.1 Score=36.36 Aligned_cols=113 Identities=16% Similarity=0.188 Sum_probs=69.4
Q ss_pred HHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHH
Q 014369 150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFS 229 (426)
Q Consensus 150 ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~ 229 (426)
|.-++..|.+.|+++|..|..+++ +++. ++|.+.+++.|.+..-..
T Consensus 18 k~iv~~~l~~~GfeVi~LG~~v~~---------e~~v---------------------~aa~~~~adiVglS~l~~---- 63 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNLGVLSPQ---------EEFI---------------------KAAIETKADAILVSSLYG---- 63 (134)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCH---------HHHH---------------------HHHHHcCCCEEEEecccc----
Confidence 345677889999999999976543 3333 466667778777753211
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHH
Q 014369 230 KSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVV 309 (426)
Q Consensus 230 ~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~ 309 (426)
..+..+.+++++.++.|+.-.. +. +|.- --.+++...+..+++.++|++.+.=+.| .|+++.
T Consensus 64 ---------~~~~~~~~~~~~l~~~gl~~~~-vi--vGG~--~vi~~~d~~~~~~~l~~~Gv~~vF~pgt----~~~~iv 125 (134)
T TIGR01501 64 ---------HGEIDCKGLRQKCDEAGLEGIL-LY--VGGN--LVVGKQDFPDVEKRFKEMGFDRVFAPGT----PPEVVI 125 (134)
T ss_pred ---------cCHHHHHHHHHHHHHCCCCCCE-EE--ecCC--cCcChhhhHHHHHHHHHcCCCEEECcCC----CHHHHH
Confidence 1134456677777888774221 21 2211 0134455555566778889888887777 566666
Q ss_pred HHHHH
Q 014369 310 PMLEA 314 (426)
Q Consensus 310 ~li~~ 314 (426)
..++.
T Consensus 126 ~~l~~ 130 (134)
T TIGR01501 126 ADLKK 130 (134)
T ss_pred HHHHH
Confidence 65554
No 289
>PLN02623 pyruvate kinase
Probab=92.55 E-value=13 Score=40.99 Aligned_cols=248 Identities=11% Similarity=0.083 Sum_probs=140.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-CCCcEEEEeCChh---hHHHHHHcCCCEEE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLK---GFEAAIAAGAKEVA 219 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~l~~~~~---di~~a~~~Gv~~V~ 219 (426)
.++..++..| +...+.|+|.|=+.|--+. .|-.++.+.++.. ..+.+.+.+-+.+ .++..++ |+|.|.
T Consensus 275 ~lTekD~~di-~f~~~~~vD~ialSFVr~a------~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~-g~DgIm 346 (581)
T PLN02623 275 SITEKDWEDI-KFGVENKVDFYAVSFVKDA------QVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIT-ASDGAM 346 (581)
T ss_pred CCCHHHHHHH-HHHHHcCCCEEEECCCCCH------HHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHH-hCCEEE
Confidence 3666676664 6677899999888763222 2334444444432 2344455554544 4555555 899776
Q ss_pred EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEE----EeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 014369 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV----SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS 295 (426)
Q Consensus 220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v----~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~ 295 (426)
|. -.|+-.+. + .++.....+++++.|+++|..+.+.- ++.+ .|..+|+ ++.+++ .+...|+|.|.
T Consensus 347 Ig--rgDLgvel--g--~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~-~~~PTRA---Ev~Dva-~av~dG~d~vm 415 (581)
T PLN02623 347 VA--RGDLGAEL--P--IEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIV-HPTPTRA---EVSDIA-IAVREGADAVM 415 (581)
T ss_pred EC--cchhhhhc--C--cHHHHHHHHHHHHHHHHhCCCEEEECchhhhccc-CCCCCch---hHHHHH-HHHHcCCCEEE
Confidence 64 34543332 2 36777778899999999999886321 1111 2333444 444433 34568999888
Q ss_pred Ec-CCCCCCCHHHHHHHHHHHHHhcCC-ce-------EEEEeCCC--cCcHHHHHHHHHHcCCCEEeecccCCCC-----
Q 014369 296 LG-DTIGVGTPGTVVPMLEAVMAVVPV-EK-------LAVHLHDT--YGQSLPNILISLQMGISTVDCSVAGLGG----- 359 (426)
Q Consensus 296 l~-DT~G~~~P~~v~~li~~l~~~~p~-~~-------i~~H~HNd--~GlA~ANaLaAl~aGa~~VD~Sv~GlGe----- 359 (426)
|. ||.=--.|.+..+++..+..+.-. .. +.-+..++ --.|.+...+|-..++.+|--|-.|--.
T Consensus 416 Ls~Eta~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~sA~~~A~~l~a~Ivv~T~sG~tA~~lSr 495 (581)
T PLN02623 416 LSGETAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQAFKNHMSEMFAFHATMMANTLGTSIIVFTRTGFMAILLSH 495 (581)
T ss_pred ecchhhcCcCHHHHHHHHHHHHHHHHhhcccchhhhhhccccCCChHHHHHHHHHHHHHhcCCcEEEECCCcHHHHHHHh
Confidence 87 666667899888888887754321 00 00111111 2355556667778888888888777532
Q ss_pred C-CCCCCCCCcccHHHHHHHHHhC-CCCC-----CcChhhHHHHHHHHHHHhCCCCCCC
Q 014369 360 C-PYAKGASGNVATEDVVYMLSGL-GVET-----NVDLRKLMLAGDFINKHLGRPSGSK 411 (426)
Q Consensus 360 c-P~a~graGNa~lEevv~~L~~l-G~~~-----~iDl~~L~~la~~v~~~~g~~~~~~ 411 (426)
+ |-.|- -+-++-+.++..|.-+ |+.+ .-|.+.+...+....+..|.--+..
T Consensus 496 ~RP~~pI-~avT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~~a~~~~~~~g~v~~GD 553 (581)
T PLN02623 496 YRPSGTI-FAFTNEKRIQQRLALYQGVCPIYMQFSDDAEETFARALSLLLNKGMVKEGE 553 (581)
T ss_pred hCCCCCE-EEECCCHHHHHHhhcccccEEEecCCCCCHHHHHHHHHHHHHHcCCCCCCC
Confidence 0 11111 2234446666666653 6532 2255666666655555566543333
No 290
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=92.53 E-value=2.8 Score=45.12 Aligned_cols=108 Identities=13% Similarity=0.122 Sum_probs=72.8
Q ss_pred hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369 204 LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYV 282 (426)
Q Consensus 204 ~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~pd~~r~~~~~l~~~ 282 (426)
.+-++...++|+.+|.|.+...+......+|+. ...+++.++++.++++|+ .+.+.++ +|.|.. +.+.+.+.
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~--ht~e~v~~ai~~ar~~Gf~~In~DLI--~GLPgE---t~ed~~~t 341 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQTMNDETLKAIGRH--HTVEDIIEKFHLAREMGFDNINMDLI--IGLPGE---GLEEVKHT 341 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCeEEEEEE--eCCCCC---CHHHHHHH
Confidence 456788889999999988754443333345553 234556688889999999 5666666 677765 47888888
Q ss_pred HHHHHhCCCCEEEEcCC--------------CCCCCHHHHHHHHHHHHHh
Q 014369 283 AKELHDMGCFEISLGDT--------------IGVGTPGTVVPMLEAVMAV 318 (426)
Q Consensus 283 ~~~l~~~Gad~I~l~DT--------------~G~~~P~~v~~li~~l~~~ 318 (426)
++.+.+++++.|.+--. .....+++..+++....+.
T Consensus 342 l~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~ 391 (488)
T PRK08207 342 LEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEW 391 (488)
T ss_pred HHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHH
Confidence 88999999987775422 2334455555665555544
No 291
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=92.50 E-value=2.1 Score=43.03 Aligned_cols=136 Identities=13% Similarity=0.218 Sum_probs=86.5
Q ss_pred hhHHHHHHcCCCEEEEec-cCC-hHHHhhhc-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369 205 KGFEAAIAAGAKEVAIFA-SAS-EAFSKSNI-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 281 (426)
Q Consensus 205 ~di~~a~~~Gv~~V~i~~-~~S-d~~~~~~~-~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~ 281 (426)
-..+.+.++|.+-+.+.= +++ -.+-.--. -.+.++.++.++++++. -.++|.+.+- .+--++..+.+
T Consensus 28 ~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~---~~iPviaD~d-------~GyG~~~~v~r 97 (292)
T PRK11320 28 YHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDA---CDLPLLVDID-------TGFGGAFNIAR 97 (292)
T ss_pred HHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhc---cCCCEEEECC-------CCCCCHHHHHH
Confidence 344566678888766641 111 00000011 23677888877776554 3577765443 33337899999
Q ss_pred HHHHHHhCCCCEEEEcCCC-----C------CCCHHHHHHHHHHHHHhcCCceEEEEeC------CCcCcHHHHHHHHHH
Q 014369 282 VAKELHDMGCFEISLGDTI-----G------VGTPGTVVPMLEAVMAVVPVEKLAVHLH------DTYGQSLPNILISLQ 344 (426)
Q Consensus 282 ~~~~l~~~Gad~I~l~DT~-----G------~~~P~~v~~li~~l~~~~p~~~i~~H~H------Nd~GlA~ANaLaAl~ 344 (426)
.++.+.++|+..|.|-|.+ | +..++++..-|++.++.-.+..+-+=.- +.+--|+.-+.+-.+
T Consensus 98 ~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~e 177 (292)
T PRK11320 98 TVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVE 177 (292)
T ss_pred HHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHH
Confidence 9999999999999999987 3 3456777777777776542222333222 234567888888999
Q ss_pred cCCCEE
Q 014369 345 MGISTV 350 (426)
Q Consensus 345 aGa~~V 350 (426)
||||.|
T Consensus 178 AGAD~i 183 (292)
T PRK11320 178 AGADMI 183 (292)
T ss_pred cCCCEE
Confidence 999966
No 292
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=92.45 E-value=1.9 Score=43.04 Aligned_cols=69 Identities=16% Similarity=0.059 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 014369 276 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA 355 (426)
Q Consensus 276 ~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~ 355 (426)
..++ .-++.+.++|+|.| |-.....| ..+++..+|..+ +.+|-.-+- | +..++.|+++|+++|-+|+.
T Consensus 74 ~~~~-~Ea~~L~eaGvDiI---DaT~r~rP--~~~~~~~iK~~~-~~l~MAD~s-t----leEal~a~~~Gad~I~TTl~ 141 (283)
T cd04727 74 IGHF-VEAQILEALGVDMI---DESEVLTP--ADEEHHIDKHKF-KVPFVCGAR-N----LGEALRRISEGAAMIRTKGE 141 (283)
T ss_pred hhHH-HHHHHHHHcCCCEE---eccCCCCc--HHHHHHHHHHHc-CCcEEccCC-C----HHHHHHHHHCCCCEEEecCC
Confidence 3444 44788999999999 87777888 688999999987 333333322 2 57889999999999999998
Q ss_pred C
Q 014369 356 G 356 (426)
Q Consensus 356 G 356 (426)
|
T Consensus 142 g 142 (283)
T cd04727 142 A 142 (283)
T ss_pred C
Confidence 5
No 293
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=92.41 E-value=1.6 Score=43.76 Aligned_cols=102 Identities=12% Similarity=0.084 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcCC-CCCCCHHHHHHHHHHHHHhcCC
Q 014369 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVPV 321 (426)
Q Consensus 244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~DT-~G~~~P~~v~~li~~l~~~~p~ 321 (426)
+.++.+.|++.++-|-+ |.+ .+.+.+..+++++.+.+.. +|.+... ..++-...+..++..+.+....
T Consensus 6 ~k~il~~A~~~~yaV~A-----fN~-----~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~V 75 (284)
T PRK09195 6 TKQMLNNAQRGGYAVPA-----FNI-----HNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHH 75 (284)
T ss_pred HHHHHHHHHHcCceEEE-----EEe-----CCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCC
Confidence 56788899999987642 321 3678999999999999876 4444432 2334445678888888877753
Q ss_pred ceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCC
Q 014369 322 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLG 358 (426)
Q Consensus 322 ~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlG 358 (426)
|+.+| =|.|.-......|+++|.+ .+|+|-..+-
T Consensus 76 -PV~lH--LDHg~~~e~i~~Ai~~GftSVM~DgS~l~~e 111 (284)
T PRK09195 76 -PLALH--LDHHEKFDDIAQKVRSGVRSVMIDGSHLPFA 111 (284)
T ss_pred -CEEEE--CCCCCCHHHHHHHHHcCCCEEEeCCCCCCHH
Confidence 56655 5777789999999999998 6688876543
No 294
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=92.41 E-value=1.8 Score=44.59 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcCCC-CCCCHHHHHHHHHHHHHhcC
Q 014369 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTI-GVGTPGTVVPMLEAVMAVVP 320 (426)
Q Consensus 243 ~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~DT~-G~~~P~~v~~li~~l~~~~p 320 (426)
.+.++++.|++.++-|-+ |.+ .+.+.+..+++++.+.+.. +|.+.... .++-...+..++..+.+..+
T Consensus 5 ~~k~lL~~A~~~~yAVgA-----fN~-----~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~ 74 (347)
T PRK09196 5 SLRQLLDHAAEHGYGVPA-----FNV-----NNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYP 74 (347)
T ss_pred cHHHHHHHHHHcCceEEE-----eee-----CCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCC
Confidence 356788899999987753 322 4678999999999999976 55554443 33334567888888877776
Q ss_pred CceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeeccc
Q 014369 321 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVA 355 (426)
Q Consensus 321 ~~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~ 355 (426)
.+|+.+| =|.|........|+++|.+ .+|+|-.
T Consensus 75 ~VPValH--LDHg~~~e~i~~ai~~GftSVMiDgS~l 109 (347)
T PRK09196 75 HIPVVMH--QDHGNSPATCQRAIQLGFTSVMMDGSLK 109 (347)
T ss_pred CCcEEEE--CCCCCCHHHHHHHHHcCCCEEEecCCCC
Confidence 4466665 4777788889999999998 6798876
No 295
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=92.38 E-value=5.6 Score=40.78 Aligned_cols=136 Identities=20% Similarity=0.123 Sum_probs=83.0
Q ss_pred HHHHHHcCCCEEEEecc--------CChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc-CCc--EEEEEEeeecCCCCCC
Q 014369 207 FEAAIAAGAKEVAIFAS--------ASEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-SIP--VRGYVSCVVGCPVEGA 273 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~--------~Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~--v~~~v~~~fg~pd~~r 273 (426)
.++|.++|.|.|.|... +|+. ++...+|-+.++=.+.+.++++.+|+. |.. |.+-++..-. ..+.
T Consensus 143 A~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~--~~~g 220 (353)
T cd02930 143 AALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDL--VEGG 220 (353)
T ss_pred HHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEeccccc--CCCC
Confidence 35667899999988542 1332 334456778887777788888888874 543 3333332100 1123
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCC---C-------H-HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHH
Q 014369 274 IPPSKVAYVAKELHDMGCFEISLGDTIGVG---T-------P-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 342 (426)
Q Consensus 274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~---~-------P-~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaA 342 (426)
.+++...++++.+.++|+|.|.+. .|.. + | .....+.+.+++.++. +|..-.--+ ....+..+
T Consensus 221 ~~~~e~~~i~~~Le~~G~d~i~vs--~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~i-PVi~~G~i~---~~~~a~~~ 294 (353)
T cd02930 221 STWEEVVALAKALEAAGADILNTG--IGWHEARVPTIATSVPRGAFAWATAKLKRAVDI-PVIASNRIN---TPEVAERL 294 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeC--CCcCCCCCccccccCCchhhHHHHHHHHHhCCC-CEEEcCCCC---CHHHHHHH
Confidence 678899999999999999999882 2321 1 1 1234456777777653 444432211 24666777
Q ss_pred HHcC-CCEE
Q 014369 343 LQMG-ISTV 350 (426)
Q Consensus 343 l~aG-a~~V 350 (426)
++.| +|.|
T Consensus 295 i~~g~~D~V 303 (353)
T cd02930 295 LADGDADMV 303 (353)
T ss_pred HHCCCCChh
Confidence 7776 6654
No 296
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=92.32 E-value=10 Score=37.35 Aligned_cols=151 Identities=15% Similarity=0.141 Sum_probs=91.2
Q ss_pred HHHHHHcCCCEEEEeccCChHHH----------hh-hcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCC
Q 014369 207 FEAAIAAGAKEVAIFASASEAFS----------KS-NINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGA 273 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~Sd~~~----------~~-~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r 273 (426)
++...+.|+|.|-+-+|.||... ++ .-|.+.++.+ +.++..|+. .+++. +++.+ .|.- .
T Consensus 30 ~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~----~~v~~ir~~~~~~plv--~m~Y~-Npi~-~ 101 (256)
T TIGR00262 30 IKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCF----ELLKKVRQKHPNIPIG--LLTYY-NLIF-R 101 (256)
T ss_pred HHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHH----HHHHHHHhcCCCCCEE--EEEec-cHHh-h
Confidence 45667789999999999988321 11 2244444444 444555543 55543 33322 1210 1
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369 274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 353 (426)
Q Consensus 274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S 353 (426)
-=+.++++.+.++|++.|.++|- .+++..++++.+++.-- .+.+=+-.+.-......+++...|.-++=+
T Consensus 102 ---~G~e~f~~~~~~aGvdgviipDl----p~ee~~~~~~~~~~~gl--~~i~lv~P~T~~eri~~i~~~~~gfiy~vs- 171 (256)
T TIGR00262 102 ---KGVEEFYAKCKEVGVDGVLVADL----PLEESGDLVEAAKKHGV--KPIFLVAPNADDERLKQIAEKSQGFVYLVS- 171 (256)
T ss_pred ---hhHHHHHHHHHHcCCCEEEECCC----ChHHHHHHHHHHHHCCC--cEEEEECCCCCHHHHHHHHHhCCCCEEEEE-
Confidence 12245677888999999999996 56788888888877532 244444444444555566666666666544
Q ss_pred ccCCCCCCCCCCCC--CcccHHHHHHHHHh
Q 014369 354 VAGLGGCPYAKGAS--GNVATEDVVYMLSG 381 (426)
Q Consensus 354 v~GlGecP~a~gra--GNa~lEevv~~L~~ 381 (426)
+.|..+ .. =+..+.+.+..+++
T Consensus 172 ~~G~TG------~~~~~~~~~~~~i~~lr~ 195 (256)
T TIGR00262 172 RAGVTG------ARNRAASALNELVKRLKA 195 (256)
T ss_pred CCCCCC------CcccCChhHHHHHHHHHh
Confidence 457665 22 23567777777775
No 297
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=92.23 E-value=1.6 Score=43.67 Aligned_cols=120 Identities=16% Similarity=0.159 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcCC-CCCCCHHHHHHHHHHHHHhcC
Q 014369 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVP 320 (426)
Q Consensus 243 ~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~DT-~G~~~P~~v~~li~~l~~~~p 320 (426)
.++++.+.|++.++-|-+ |.+ .+.+.+..+++++.+.+.. +|.+... ..+.--..+..++..+.+..+
T Consensus 5 ~~k~iL~~A~~~~yaV~A-----fNv-----~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~ 74 (284)
T PRK12857 5 TVAELLKKAEKGGYAVGA-----FNC-----NNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKAS 74 (284)
T ss_pred cHHHHHHHHHHcCCeEEE-----EEe-----CCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCC
Confidence 356788889999987653 321 3568899999999999876 4555443 223333556777777777765
Q ss_pred CceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCC
Q 014369 321 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG 383 (426)
Q Consensus 321 ~~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG 383 (426)
. |+.+| =|.|.-......|+++|.+ .+|+|-..+-+ -..-|-+++.+.+..|
T Consensus 75 V-PValH--LDH~~~~e~i~~ai~~GftSVM~DgS~lp~ee--------Ni~~T~~vv~~Ah~~g 128 (284)
T PRK12857 75 V-PVALH--LDHGTDFEQVMKCIRNGFTSVMIDGSKLPLEE--------NIALTKKVVEIAHAVG 128 (284)
T ss_pred C-CEEEE--CCCCCCHHHHHHHHHcCCCeEEEeCCCCCHHH--------HHHHHHHHHHHHHHcC
Confidence 4 56655 5777788899999999998 67999886655 2355667777776444
No 298
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=92.22 E-value=2.1 Score=45.42 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEec-----CCCCCccccccCHHHHHHHhHhc-CCCcE--EEEeCC---hhhHHHHHH
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATS-----FVSPKWVPQLADARDVMEAVRDL-EGARL--PVLTPN---LKGFEAAIA 212 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~-----~~s~~~~p~~~D~~~v~~~i~~~-~~~~l--~~l~~~---~~di~~a~~ 212 (426)
..+.++.++=++.|.+.|++.|.+.. +..... ..+..++++.+... ++.++ .+..|. .+-++...+
T Consensus 177 sr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~---~~~l~~Ll~~l~~~~~~~rir~~~~~p~~l~~ell~~~~~ 253 (445)
T PRK14340 177 SHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEA---GADFAGLLDAVSRAAPEMRIRFTTSHPKDISESLVRTIAA 253 (445)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCC---CchHHHHHHHHhhcCCCcEEEEccCChhhcCHHHHHHHHh
Confidence 56888888888999999999887741 111111 12345666665432 33443 333342 334555555
Q ss_pred c--CCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369 213 A--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH 287 (426)
Q Consensus 213 ~--Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~ 287 (426)
. |...+++.+ +.|+.-++. +|+.. ..+++.++++.+|+. |+.+..++. +|.|..+ .+.+.+.++.+.
T Consensus 254 ~~~g~~~l~iglQSgsd~vLk~-m~R~~--t~~~~~~~v~~lr~~~pgi~i~td~I--vGfPgET---~edf~~tl~~~~ 325 (445)
T PRK14340 254 RPNICNHIHLPVQSGSSRMLRR-MNRGH--TIEEYLEKIALIRSAIPGVTLSTDLI--AGFCGET---EEDHRATLSLME 325 (445)
T ss_pred CCCCCCeEEECCCcCCHHHHHh-cCCCC--CHHHHHHHHHHHHHhCCCCEEeccEE--EECCCCC---HHHHHHHHHHHH
Confidence 4 688999987 556654443 44432 345667888889988 998887776 6778764 566677777777
Q ss_pred hCCCCEEE
Q 014369 288 DMGCFEIS 295 (426)
Q Consensus 288 ~~Gad~I~ 295 (426)
+.+.+.+.
T Consensus 326 ~~~~~~~~ 333 (445)
T PRK14340 326 EVRFDSAF 333 (445)
T ss_pred hcCCCEEe
Confidence 77776554
No 299
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=92.13 E-value=3.4 Score=42.70 Aligned_cols=141 Identities=16% Similarity=0.081 Sum_probs=84.1
Q ss_pred HHHHHcCCCEEEEecc--------CChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc-CCc-EEEEEEee--ecCCCCCC
Q 014369 208 EAAIAAGAKEVAIFAS--------ASEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-SIP-VRGYVSCV--VGCPVEGA 273 (426)
Q Consensus 208 ~~a~~~Gv~~V~i~~~--------~Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~-v~~~v~~~--fg~pd~~r 273 (426)
++|.++|.|.|.|... +|+. ++.-.+|-|.|+=..-+.++++.+|+. |-. |.+-++.. +.. ..+-
T Consensus 166 ~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~-~~~G 244 (362)
T PRK10605 166 ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNN-VDNG 244 (362)
T ss_pred HHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCcccccc-CCCC
Confidence 5667899999888532 2332 223336778887777777777777664 322 33333321 000 1122
Q ss_pred CCHHH-HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CCEEe
Q 014369 274 IPPSK-VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTVD 351 (426)
Q Consensus 274 ~~~~~-l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~~VD 351 (426)
.++++ ..++++.+.+.|+|.|.+..-.-...+.-...+.+.+++.++. +|.+-.-.| ...+..+++.| ||.|
T Consensus 245 ~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~-pv~~~G~~~----~~~ae~~i~~G~~D~V- 318 (362)
T PRK10605 245 PNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHG-VIIGAGAYT----AEKAETLIGKGLIDAV- 318 (362)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCC-CEEEeCCCC----HHHHHHHHHcCCCCEE-
Confidence 46666 7999999999999999887421000111123456778888775 454444333 57788899988 6665
Q ss_pred ecccCCCC
Q 014369 352 CSVAGLGG 359 (426)
Q Consensus 352 ~Sv~GlGe 359 (426)
|||+
T Consensus 319 ----~~gR 322 (362)
T PRK10605 319 ----AFGR 322 (362)
T ss_pred ----EECH
Confidence 6664
No 300
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=92.12 E-value=4.2 Score=42.87 Aligned_cols=88 Identities=9% Similarity=-0.017 Sum_probs=63.0
Q ss_pred hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcE-EEEEEeeecCCCCCCCCHHHHHHH
Q 014369 204 LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV-RGYVSCVVGCPVEGAIPPSKVAYV 282 (426)
Q Consensus 204 ~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v-~~~v~~~fg~pd~~r~~~~~l~~~ 282 (426)
.+-++...++|+.+|.|.+..-+-.....+|+.. ..+++.++++.+++.|+.+ .+.++ +|.|.. +++.+.+.
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~i~~dlI--~GlP~q---t~e~~~~~ 213 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQSFHDSELHALHRPQ--KRADVHQALEWIRAAGFPILNIDLI--YGIPGQ---THASWMES 213 (430)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCC--CHHHHHHHHHHHHHcCCCeEEEEee--cCCCCC---CHHHHHHH
Confidence 4567888889999999987544333334455532 4556778889999999974 45555 677754 57888888
Q ss_pred HHHHHhCCCCEEEEcC
Q 014369 283 AKELHDMGCFEISLGD 298 (426)
Q Consensus 283 ~~~l~~~Gad~I~l~D 298 (426)
++.+.+.|++.|.+-.
T Consensus 214 l~~~~~l~~~~is~y~ 229 (430)
T PRK08208 214 LDQALVYRPEELFLYP 229 (430)
T ss_pred HHHHHhCCCCEEEEcc
Confidence 8899999998777654
No 301
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=92.11 E-value=1.6 Score=44.26 Aligned_cols=120 Identities=13% Similarity=0.072 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEcCCC-CCCCHHHHHHHHHHHHHhcCC
Q 014369 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI-SLGDTI-GVGTPGTVVPMLEAVMAVVPV 321 (426)
Q Consensus 244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I-~l~DT~-G~~~P~~v~~li~~l~~~~p~ 321 (426)
++++.+.|++.++-|-+ |. -.+.+.+..+++++.+.+...| .+.... .++-...+..+++.+.+..+.
T Consensus 5 ~k~lL~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~ 74 (307)
T PRK05835 5 GNEILLKAHKEGYGVGA-----FN-----FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPH 74 (307)
T ss_pred HHHHHHHHHHCCceEEE-----EE-----ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCC
Confidence 56788899999987652 32 1467899999999999987744 443322 234456677788877777763
Q ss_pred ceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCC
Q 014369 322 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG 383 (426)
Q Consensus 322 ~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG 383 (426)
+|+.+| =|.|.-......|+++|.+ .+|+|-..+-+ -..-|-+++.+.+..|
T Consensus 75 VPValH--LDHg~~~e~i~~ai~~GftSVM~DgS~l~~ee--------Ni~~T~~vve~Ah~~g 128 (307)
T PRK05835 75 IPVALH--LDHGTTFESCEKAVKAGFTSVMIDASHHAFEE--------NLELTSKVVKMAHNAG 128 (307)
T ss_pred CeEEEE--CCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHH--------HHHHHHHHHHHHHHcC
Confidence 466655 5778889999999999998 67999876654 2245666776666433
No 302
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=92.08 E-value=3.3 Score=43.26 Aligned_cols=107 Identities=11% Similarity=0.052 Sum_probs=71.3
Q ss_pred HHHHHHhHhc----CCCcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc
Q 014369 183 RDVMEAVRDL----EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL 254 (426)
Q Consensus 183 ~~v~~~i~~~----~~~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~ 254 (426)
.++++.+++. ++..+++-+ | +.+.++...++|+.+|.+.+..-+-.....+|+.. ..+++.++++.+++.
T Consensus 86 ~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~ 163 (400)
T PRK07379 86 ERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSH--RVKDIFAAVDLIHQA 163 (400)
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCC--CHHHHHHHHHHHHHc
Confidence 4444444421 234555543 3 24567888889999999998544444444555532 244556778889999
Q ss_pred CCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369 255 SIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (426)
Q Consensus 255 G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l 296 (426)
|+. +.+.++ +|.|.. +.+.+.+-++.+.+++++.|.+
T Consensus 164 G~~~v~~dlI--~GlPgq---t~e~~~~tl~~~~~l~p~~is~ 201 (400)
T PRK07379 164 GIENFSLDLI--SGLPHQ---TLEDWQASLEAAIALNPTHLSC 201 (400)
T ss_pred CCCeEEEEee--cCCCCC---CHHHHHHHHHHHHcCCCCEEEE
Confidence 998 666666 677754 5678888888899999988765
No 303
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=92.07 E-value=1.8 Score=46.70 Aligned_cols=70 Identities=11% Similarity=0.089 Sum_probs=52.3
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 014369 280 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA 355 (426)
Q Consensus 280 ~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~ 355 (426)
.+.++.+.++|++.|.| |+.- .....+.++|+.+++.+|+.+|.+ -...-...+..++++||+.|.+++.
T Consensus 243 ~~~~~~l~~ag~d~i~i-d~a~-G~s~~~~~~i~~ik~~~~~~~v~a----G~V~t~~~a~~~~~aGad~I~vg~g 312 (495)
T PTZ00314 243 IERAAALIEAGVDVLVV-DSSQ-GNSIYQIDMIKKLKSNYPHVDIIA----GNVVTADQAKNLIDAGADGLRIGMG 312 (495)
T ss_pred HHHHHHHHHCCCCEEEE-ecCC-CCchHHHHHHHHHHhhCCCceEEE----CCcCCHHHHHHHHHcCCCEEEECCc
Confidence 67788999999999988 4432 333445788999999998767766 1233346888999999999988654
No 304
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=92.06 E-value=6.7 Score=40.13 Aligned_cols=137 Identities=18% Similarity=0.173 Sum_probs=81.7
Q ss_pred HHHHHcCCCEEEEecc--------CChHHHh--hhcCCCHHHHHHHHHHHHHHHHhc-CCc--EEEEEEeeecCCCCCCC
Q 014369 208 EAAIAAGAKEVAIFAS--------ASEAFSK--SNINCSIEDSLVRYRAVAHAAKVL-SIP--VRGYVSCVVGCPVEGAI 274 (426)
Q Consensus 208 ~~a~~~Gv~~V~i~~~--------~Sd~~~~--~~~~~s~~e~l~~~~~~v~~Ak~~-G~~--v~~~v~~~fg~pd~~r~ 274 (426)
++|.++|.|.|.|... +|+..++ ..+|-+.++=.+.+.++++.+|+. |.. |.+-++..-. ..+-.
T Consensus 148 ~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~--~~~G~ 225 (343)
T cd04734 148 RRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDED--TEGGL 225 (343)
T ss_pred HHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhc--cCCCC
Confidence 4667799998887752 2554433 457888888778888888888875 533 3333432100 01224
Q ss_pred CHHHHHHHHHHHHhCC-CCEEEEcCC-----------CCC--CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHH
Q 014369 275 PPSKVAYVAKELHDMG-CFEISLGDT-----------IGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNIL 340 (426)
Q Consensus 275 ~~~~l~~~~~~l~~~G-ad~I~l~DT-----------~G~--~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaL 340 (426)
++++..++++.+.++| +|.|.+.-- ... ..+....++++.+++.+.. +|..-+ ++- ...-+.
T Consensus 226 ~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~i-pvi~~G--~i~-~~~~~~ 301 (343)
T cd04734 226 SPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDL-PVFHAG--RIR-DPAEAE 301 (343)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCC-CEEeeC--CCC-CHHHHH
Confidence 6788899999999998 899988311 000 0112234667777777653 343332 111 135566
Q ss_pred HHHHcC-CCEE
Q 014369 341 ISLQMG-ISTV 350 (426)
Q Consensus 341 aAl~aG-a~~V 350 (426)
.+++.| +|.|
T Consensus 302 ~~l~~~~~D~V 312 (343)
T cd04734 302 QALAAGHADMV 312 (343)
T ss_pred HHHHcCCCCee
Confidence 667765 6655
No 305
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=92.04 E-value=5 Score=35.57 Aligned_cols=109 Identities=15% Similarity=0.225 Sum_probs=67.0
Q ss_pred HHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHH
Q 014369 150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFS 229 (426)
Q Consensus 150 ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~ 229 (426)
|.-++..|.+.|+++|..|..+++ +++. ++|.+.+++.|.+..-...
T Consensus 16 kniv~~~L~~~GfeVidLG~~v~~---------e~~v---------------------~aa~~~~adiVglS~L~t~--- 62 (128)
T cd02072 16 NKILDHAFTEAGFNVVNLGVLSPQ---------EEFI---------------------DAAIETDADAILVSSLYGH--- 62 (128)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCH---------HHHH---------------------HHHHHcCCCEEEEeccccC---
Confidence 345677888999999999976543 2333 4667777888877632211
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHH
Q 014369 230 KSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTV 308 (426)
Q Consensus 230 ~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v 308 (426)
.+..++++++..++.|+ .+- +. .|..- ..+++...+..++|.++|++.++=++| .|.++
T Consensus 63 ----------~~~~~~~~~~~l~~~gl~~v~--vi--vGG~~--~i~~~d~~~~~~~L~~~Gv~~vf~pgt----~~~~i 122 (128)
T cd02072 63 ----------GEIDCKGLREKCDEAGLKDIL--LY--VGGNL--VVGKQDFEDVEKRFKEMGFDRVFAPGT----PPEEA 122 (128)
T ss_pred ----------CHHHHHHHHHHHHHCCCCCCe--EE--EECCC--CCChhhhHHHHHHHHHcCCCEEECcCC----CHHHH
Confidence 13445677777777776 322 21 22210 124455556667788899998887777 55555
Q ss_pred HHH
Q 014369 309 VPM 311 (426)
Q Consensus 309 ~~l 311 (426)
..-
T Consensus 123 ~~~ 125 (128)
T cd02072 123 IAD 125 (128)
T ss_pred HHH
Confidence 443
No 306
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=92.04 E-value=3.3 Score=42.10 Aligned_cols=130 Identities=17% Similarity=0.170 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhCCCCeEEEecCC-CCCccccccCHHHHHHHhHh-cCCCcEEE-EeCChhhHHHHHHcCCCEEEEeccC
Q 014369 148 GVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRD-LEGARLPV-LTPNLKGFEAAIAAGAKEVAIFASA 224 (426)
Q Consensus 148 ~~ki~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~~~v~~~i~~-~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~~ 224 (426)
++..+.++.|.++|++.|++-+.. .++ ...+.++.+++ .|++.+.+ -+.+.++.+.+.++|+|.|.+....
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~~~------~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~ 166 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGHSV------YVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGP 166 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCCcH------HHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCC
Confidence 445778889999999999986421 211 12344455553 34333332 2345788899999999999874321
Q ss_pred ChHHHhh-hcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369 225 SEAFSKS-NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG 297 (426)
Q Consensus 225 Sd~~~~~-~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~ 297 (426)
...+... ..+... -.+..+.++.+.+++.+++|. .+.+-.++..+.+ .+ ++||+.+.+.
T Consensus 167 G~~~~t~~~~g~g~-p~~~~i~~v~~~~~~~~vpVI---------A~GGI~~~~di~k---Al-a~GA~~VmiG 226 (325)
T cd00381 167 GSICTTRIVTGVGV-PQATAVADVAAAARDYGVPVI---------ADGGIRTSGDIVK---AL-AAGADAVMLG 226 (325)
T ss_pred CcCcccceeCCCCC-CHHHHHHHHHHHHhhcCCcEE---------ecCCCCCHHHHHH---HH-HcCCCEEEec
Confidence 1111010 011111 123445566667777777764 1345455555444 33 4999888663
No 307
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=92.01 E-value=2 Score=43.89 Aligned_cols=127 Identities=19% Similarity=0.259 Sum_probs=73.7
Q ss_pred EEEEeeecCCCCCC----------CCHHHHHHHHHHHHhCCCC-EEEEcCCCCCCCHH---HHHHHHHHHHHhcCCceEE
Q 014369 260 GYVSCVVGCPVEGA----------IPPSKVAYVAKELHDMGCF-EISLGDTIGVGTPG---TVVPMLEAVMAVVPVEKLA 325 (426)
Q Consensus 260 ~~v~~~fg~pd~~r----------~~~~~l~~~~~~l~~~Gad-~I~l~DT~G~~~P~---~v~~li~~l~~~~p~~~i~ 325 (426)
+++.|.|.+-|++. .|+|++.+..+...+..-+ .=..=| |.+.|. .+.++++++++.=....++
T Consensus 117 CnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlD--GqGEP~lYP~l~~lVqalk~~~~v~vVS 194 (414)
T COG2100 117 CNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLD--GQGEPLLYPHLVDLVQALKEHKGVEVVS 194 (414)
T ss_pred ccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEec--CCCCCccchhHHHHHHHHhcCCCceEEE
Confidence 45555565545543 4889999999888776432 222334 455563 4566777776652233355
Q ss_pred EEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhC
Q 014369 326 VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLG 405 (426)
Q Consensus 326 ~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g 405 (426)
+..|-.. |.---+-+-.+||.++|+.||..+-. .++-+| .|.+ .+|++++.++++++.+ +|
T Consensus 195 mQTng~~-L~~~lv~eLeeAGLdRiNlSv~aLDp--------------k~Ak~L--~G~~-dYdv~kvle~aE~i~~-a~ 255 (414)
T COG2100 195 MQTNGVL-LSKKLVDELEEAGLDRINLSVDALDP--------------KLAKML--AGRK-DYDVKKVLEVAEYIAN-AG 255 (414)
T ss_pred EeeCcee-ccHHHHHHHHHhCCceEEeecccCCH--------------HHHHHh--cCcc-ccCHHHHHHHHHHHHh-CC
Confidence 5554331 22222333348999999999998865 122222 2443 5777777777777766 44
Q ss_pred CC
Q 014369 406 RP 407 (426)
Q Consensus 406 ~~ 407 (426)
+.
T Consensus 256 id 257 (414)
T COG2100 256 ID 257 (414)
T ss_pred CC
Confidence 43
No 308
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=91.96 E-value=12 Score=35.75 Aligned_cols=180 Identities=17% Similarity=0.104 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEE--EeCChhhHHHHHHcCCCEEEEeccCC
Q 014369 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIFASAS 225 (426)
Q Consensus 148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~~di~~a~~~Gv~~V~i~~~~S 225 (426)
.+-+++++.+.+.|++.|=+.-...-... .-.+. ++++.+.+..+.++.+ -.+..++++.+.+.|++.|.+-..
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~-~~~n~-~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~-- 105 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRG-REPLF-ELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTA-- 105 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccC-CCCCH-HHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChh--
Confidence 36788999999999996666432211000 00122 3444444323344333 336788999999999998866421
Q ss_pred hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCC--------CC-CCCCHHHHHHHHHHHHhCCCCEEE
Q 014369 226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCP--------VE-GAIPPSKVAYVAKELHDMGCFEIS 295 (426)
Q Consensus 226 d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~p--------d~-~r~~~~~l~~~~~~l~~~Gad~I~ 295 (426)
.+ +..+.+.++++.. |-+ +.+.+-.--+.. +. .........++++.+.++|++.|.
T Consensus 106 -~l----------~~~~~~~~~~~~~---~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~ 171 (232)
T TIGR03572 106 -AL----------ENPDLIEEAARRF---GSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEIL 171 (232)
T ss_pred -Hh----------cCHHHHHHHHHHc---CCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEE
Confidence 11 1122333333332 322 222222100000 00 011123356788899999999999
Q ss_pred EcCC--CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHH-HHHcCCCEE
Q 014369 296 LGDT--IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI-SLQMGISTV 350 (426)
Q Consensus 296 l~DT--~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLa-Al~aGa~~V 350 (426)
+-|- .|.... --.++++.+++..+. ||-.=+.-. ...-+.. ..+.||+.|
T Consensus 172 i~~i~~~g~~~g-~~~~~~~~i~~~~~i-pvia~GGi~---s~~di~~~l~~~gadgV 224 (232)
T TIGR03572 172 LNSIDRDGTMKG-YDLELIKTVSDAVSI-PVIALGGAG---SLDDLVEVALEAGASAV 224 (232)
T ss_pred EeCCCccCCcCC-CCHHHHHHHHhhCCC-CEEEECCCC---CHHHHHHHHHHcCCCEE
Confidence 9983 333222 236677777776643 343332221 1222233 234677755
No 309
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=91.94 E-value=9.5 Score=40.73 Aligned_cols=123 Identities=16% Similarity=0.222 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHH-----HhCC----CCeEEEecCCCCCccccccCHHHHHHHhHhc---CCCcEEEEeCChhhHHHHHH
Q 014369 145 VPTGVKVELIRRL-----VSSG----LPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKGFEAAIA 212 (426)
Q Consensus 145 f~~~~ki~I~~~L-----~~~G----v~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~~~~di~~a~~ 212 (426)
++.+.-.+.++.+ .+.| .|.|-+++... |++.+...++.+ .+..++.-+.+.+-++++++
T Consensus 102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~--------dp~~v~~~Vk~V~~~~dvPLSIDT~dpevleaAle 173 (450)
T PRK04165 102 MDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG--------DPEKFAKAVKKVAETTDLPLILCSEDPAVLKAALE 173 (450)
T ss_pred CChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC--------CHHHHHHHHHHHHHhcCCCEEEeCCCHHHHHHHHH
Confidence 4555555555555 4556 99999997542 334444444433 35667767788899999999
Q ss_pred cCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369 213 AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF 292 (426)
Q Consensus 213 ~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad 292 (426)
+|.+..-+..+++. +++..+++.|+++|..+.+ + .+ +.+.+.++.+.+.++|..
T Consensus 174 agad~~plI~Sat~---------------dN~~~m~~la~~yg~pvVv--~----~~-----dl~~L~~lv~~~~~~GI~ 227 (450)
T PRK04165 174 VVADRKPLLYAATK---------------ENYEEMAELAKEYNCPLVV--K----AP-----NLEELKELVEKLQAAGIK 227 (450)
T ss_pred hcCCCCceEEecCc---------------chHHHHHHHHHHcCCcEEE--E----ch-----hHHHHHHHHHHHHHcCCC
Confidence 99987777766543 3445667778888887753 1 11 268888999999999997
Q ss_pred EEEEcCCCC
Q 014369 293 EISLGDTIG 301 (426)
Q Consensus 293 ~I~l~DT~G 301 (426)
.|.|==..|
T Consensus 228 dIILDPg~g 236 (450)
T PRK04165 228 DLVLDPGTE 236 (450)
T ss_pred cEEECCCCc
Confidence 776644443
No 310
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=91.93 E-value=2.2 Score=41.59 Aligned_cols=139 Identities=19% Similarity=0.217 Sum_probs=83.0
Q ss_pred ChhhHHHHHHcCCCEEEEe-ccCChHHHhhhc-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369 203 NLKGFEAAIAAGAKEVAIF-ASASEAFSKSNI-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA 280 (426)
Q Consensus 203 ~~~di~~a~~~Gv~~V~i~-~~~Sd~~~~~~~-~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~ 280 (426)
+--..+.+.++|.+-+.+. ..++-.+-.--. -.|.+|.++.++++++.+ .++|.+.+- ..+-.++..+.
T Consensus 18 D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~---~iPv~vD~d------~GyG~~~~~v~ 88 (238)
T PF13714_consen 18 DALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV---SIPVIVDAD------TGYGNDPENVA 88 (238)
T ss_dssp SHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS---SSEEEEE-T------TTSSSSHHHHH
T ss_pred CHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh---cCcEEEEcc------cccCchhHHHH
Confidence 3344556667788876654 111111100001 237788888887777665 577775442 22223489999
Q ss_pred HHHHHHHhCCCCEEEEcCC-CC-----CCCHHHHHHHHHHHHHhcCCceEEEEeCCCc--------CcHHHHHHHHHHcC
Q 014369 281 YVAKELHDMGCFEISLGDT-IG-----VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY--------GQSLPNILISLQMG 346 (426)
Q Consensus 281 ~~~~~l~~~Gad~I~l~DT-~G-----~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~--------GlA~ANaLaAl~aG 346 (426)
+.++.+.++|+..|.|-|. .| +..++++..-|++.++...+..+-+=.--|- --++.-+.+-.++|
T Consensus 89 ~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAG 168 (238)
T PF13714_consen 89 RTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAG 168 (238)
T ss_dssp HHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999 34 4467888888888887653322333333332 34566677778999
Q ss_pred CCEE
Q 014369 347 ISTV 350 (426)
Q Consensus 347 a~~V 350 (426)
||.|
T Consensus 169 AD~i 172 (238)
T PF13714_consen 169 ADMI 172 (238)
T ss_dssp -SEE
T ss_pred CCEE
Confidence 9976
No 311
>PRK07094 biotin synthase; Provisional
Probab=91.92 E-value=14 Score=37.02 Aligned_cols=141 Identities=16% Similarity=0.082 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCC-CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHH-HHHHcCCCEEe
Q 014369 274 IPPSKVAYVAKELHDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNIL-ISLQMGISTVD 351 (426)
Q Consensus 274 ~~~~~l~~~~~~l~~~Gad~I~l~DT-~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaL-aAl~aGa~~VD 351 (426)
.+++.+.+.++.+.+.|+..|.|.+. ........+.++++.+++. ++ +.+|++. |.-....+ .-.++|++.|.
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~-~~--l~i~~~~--g~~~~e~l~~Lk~aG~~~v~ 144 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKE-LD--VAITLSL--GERSYEEYKAWKEAGADRYL 144 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHcc-CC--ceEEEec--CCCCHHHHHHHHHcCCCEEE
Confidence 47899999999999999999999733 2345678899999999886 43 3444432 33223333 33478999988
Q ss_pred ecccCCCCCCCCCCCCCcccHHHHHHHH---HhCCCCC---------CcChhhHHHHHHHHHHHh--CCCCCCCCcccch
Q 014369 352 CSVAGLGGCPYAKGASGNVATEDVVYML---SGLGVET---------NVDLRKLMLAGDFINKHL--GRPSGSKTAIALN 417 (426)
Q Consensus 352 ~Sv~GlGecP~a~graGNa~lEevv~~L---~~lG~~~---------~iDl~~L~~la~~v~~~~--g~~~~~~~pivG~ 417 (426)
.++-+.-.==+..-+. ..+.++.+..+ ++.|+.+ +-+.+.+.+..+++.+.- .+.+.+-.|+-|.
T Consensus 145 ~glEs~~~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgT 223 (323)
T PRK07094 145 LRHETADKELYAKLHP-GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDT 223 (323)
T ss_pred eccccCCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCC
Confidence 7665542100000011 23455555544 4456542 335566666666666532 1234444454454
Q ss_pred hhh
Q 014369 418 RIA 420 (426)
Q Consensus 418 ~vf 420 (426)
-.+
T Consensus 224 pl~ 226 (323)
T PRK07094 224 PLK 226 (323)
T ss_pred Ccc
Confidence 433
No 312
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.90 E-value=7.5 Score=37.46 Aligned_cols=144 Identities=15% Similarity=0.167 Sum_probs=96.0
Q ss_pred HHHHHHHHhCCCCeEEEecCCCC-CccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHH
Q 014369 151 VELIRRLVSSGLPVVEATSFVSP-KWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFS 229 (426)
Q Consensus 151 i~I~~~L~~~Gv~~IEvG~~~s~-~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~ 229 (426)
.+-|..|.++|+++|-.|--+.+ -..|.. .+++...+.... .+.+.++.-..++.....|+.+|.+..|-.+-
T Consensus 57 ~~aAl~Lada~vdvI~Y~CtsgS~i~G~~~--d~ei~~~ie~~~--~v~vvTts~Avv~aL~al~a~ri~vlTPY~~e-- 130 (238)
T COG3473 57 ERAALELADAGVDVIVYGCTSGSLIGGPGY--DKEIAQRIEEAK--GVPVVTTSTAVVEALNALGAQRISVLTPYIDE-- 130 (238)
T ss_pred HHHHHhcCccccCEEEEeccceeeecCCch--hHHHHHHHHhcc--CCceeechHHHHHHHHhhCcceEEEeccchhh--
Confidence 44677789999999988732211 001111 245555555433 55666776667777778899999998774432
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC---CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHH
Q 014369 230 KSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPG 306 (426)
Q Consensus 230 ~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~---~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~ 306 (426)
--...+++..+.|++|.-..+ .|.+|. +|.+|..+.++++.+..-++|.|.+. .+-.
T Consensus 131 -------------vn~~e~ef~~~~Gfeiv~~~~--Lgi~dn~eigr~~P~~~y~lAk~~~~~~~DaiFiS-----CTnl 190 (238)
T COG3473 131 -------------VNQREIEFLEANGFEIVDFKG--LGITDNLEIGRQEPWAVYRLAKEVFTPDADAIFIS-----CTNL 190 (238)
T ss_pred -------------hhhHHHHHHHhCCeEEEEeec--cCCcccchhcccChHHHHHHHHHhcCCCCCeEEEE-----eecc
Confidence 113556777889998764333 344443 68999999999999998899999887 3444
Q ss_pred HHHHHHHHHHHhcC
Q 014369 307 TVVPMLEAVMAVVP 320 (426)
Q Consensus 307 ~v~~li~~l~~~~p 320 (426)
+..+.|..+-+..+
T Consensus 191 Rt~eii~~lE~~~G 204 (238)
T COG3473 191 RTFEIIEKLERDTG 204 (238)
T ss_pred ccHHHHHHHHHHhC
Confidence 55666777766653
No 313
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=91.90 E-value=1.6 Score=44.66 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCCCC-CCHHHHHHHHHHHHHhcCCceEEEEeC---------CCcCcHHHHHHHH
Q 014369 273 AIPPSKVAYVAKELHDMGCFEISLGDTIGV-GTPGTVVPMLEAVMAVVPVEKLAVHLH---------DTYGQSLPNILIS 342 (426)
Q Consensus 273 r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~-~~P~~v~~li~~l~~~~p~~~i~~H~H---------Nd~GlA~ANaLaA 342 (426)
+.+++++.+.++.+.+.|+.+|.|.+.... ...+.+.++++.+++.+|. +.+|+- +-.|+-....+..
T Consensus 78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~--i~i~~~~~~ei~~~~~~~g~~~~e~l~~ 155 (351)
T TIGR03700 78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPD--LHVKAFTAVEIHHFSKISGLPTEEVLDE 155 (351)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC--ceEEeCCHHHHHHHHHHcCCCHHHHHHH
Confidence 468999999999999999999999843332 2236889999999999985 445442 3467777776776
Q ss_pred H-HcCCCEEe
Q 014369 343 L-QMGISTVD 351 (426)
Q Consensus 343 l-~aGa~~VD 351 (426)
+ ++|++.+.
T Consensus 156 LkeAGld~~~ 165 (351)
T TIGR03700 156 LKEAGLDSMP 165 (351)
T ss_pred HHHcCCCcCC
Confidence 6 68999776
No 314
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=91.87 E-value=1.5 Score=45.16 Aligned_cols=100 Identities=13% Similarity=0.126 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEcCC-CCCCCHHHHHHHHHHHHHhcCC
Q 014369 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI-SLGDT-IGVGTPGTVVPMLEAVMAVVPV 321 (426)
Q Consensus 244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I-~l~DT-~G~~~P~~v~~li~~l~~~~p~ 321 (426)
+.++++.|++.++-|-+ |.+ .+.+.+..+++++.+.+...| .+.-. ..++-...+..+++.+.+..+.
T Consensus 4 ~k~iL~~A~~~~yAV~A-----fN~-----~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~ 73 (347)
T TIGR01521 4 MRQLLDHAAEFGYGVPA-----FNV-----NNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPH 73 (347)
T ss_pred HHHHHHHHHHcCceEEE-----Eee-----CCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCC
Confidence 45778899999987653 322 467899999999999997744 33332 2333346678888888877763
Q ss_pred ceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeeccc
Q 014369 322 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVA 355 (426)
Q Consensus 322 ~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~ 355 (426)
+|+.+| =|.|.-......|+++|.+ ++|+|-.
T Consensus 74 VPValH--LDHg~~~e~i~~Ai~~GFtSVMiDgS~l 107 (347)
T TIGR01521 74 IPVVMH--QDHGNSPATCQRAIQLGFTSVMMDGSLR 107 (347)
T ss_pred CcEEEE--CCCCCCHHHHHHHHHcCCCEEeecCcCC
Confidence 467765 5778888999999999998 6798875
No 315
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=91.85 E-value=6.9 Score=38.36 Aligned_cols=208 Identities=13% Similarity=0.091 Sum_probs=112.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhH-HHHHHcCCCEEEE
Q 014369 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGF-EAAIAAGAKEVAI 220 (426)
Q Consensus 142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di-~~a~~~Gv~~V~i 220 (426)
...|+=.+|+.+++ ++|+|.||+..-- .++.+..+..... ..-.+ .+..+.|+..=-+
T Consensus 15 p~~~sW~erl~~AK---~~GFDFvEmSvDE----------sDeRLaRLDWs~~--------er~~l~~ai~etgv~ipSm 73 (287)
T COG3623 15 PNGFSWLERLALAK---ELGFDFVEMSVDE----------SDERLARLDWSKE--------ERLALVNAIQETGVRIPSM 73 (287)
T ss_pred cCCCCHHHHHHHHH---HcCCCeEEEeccc----------hHHHHHhcCCCHH--------HHHHHHHHHHHhCCCccch
Confidence 34578888998885 5799999997532 2222322221000 01112 2344667765555
Q ss_pred eccCChHHHhhhcCC----CHHHHHHHHHHHHHHHHhcCCcEEEEEE--eeecCCCCCCCCHH-------HHHHHHHHHH
Q 014369 221 FASASEAFSKSNINC----SIEDSLVRYRAVAHAAKVLSIPVRGYVS--CVVGCPVEGAIPPS-------KVAYVAKELH 287 (426)
Q Consensus 221 ~~~~Sd~~~~~~~~~----s~~e~l~~~~~~v~~Ak~~G~~v~~~v~--~~fg~pd~~r~~~~-------~l~~~~~~l~ 287 (426)
.+| .|++..+|. +++++++-+..+++.|+++|+++. .+. .++- + ..|++ -+...++.+.
T Consensus 74 ClS---aHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtI-QLAGYDVYY-E---~~d~eT~~rFi~g~~~a~~lA~ 145 (287)
T COG3623 74 CLS---AHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTI-QLAGYDVYY-E---EADEETRQRFIEGLKWAVELAA 145 (287)
T ss_pred hhh---hhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeE-eeccceeee-c---cCCHHHHHHHHHHHHHHHHHHH
Confidence 555 366777766 478899999999999999999753 111 0110 1 12222 2334455556
Q ss_pred hCCCC-EEEEcCCCCCCCHHHHHHHHHHHHHh----cCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe------e----
Q 014369 288 DMGCF-EISLGDTIGVGTPGTVVPMLEAVMAV----VPVEKLAVHLHDTYGQSLPNILISLQMGISTVD------C---- 352 (426)
Q Consensus 288 ~~Gad-~I~l~DT~G~~~P~~v~~li~~l~~~----~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD------~---- 352 (426)
++.+- .+-+.||-=..+-.....+.+.+..- +|++-=-.-.|| +...=+..|.+.|- +
T Consensus 146 ~aqV~lAvEiMDtpfm~sIsk~~~~~~~I~sP~f~vYPDiGNlsaw~n-------dv~~El~lG~~~I~aiHlKDTy~vt 218 (287)
T COG3623 146 RAQVMLAVEIMDTPFMNSISKWLKYDKYINSPWFTVYPDIGNLSAWNN-------DVQSELQLGIDKIVAIHLKDTYAVT 218 (287)
T ss_pred hhccEEEeeecccHHHHHHHHHHHHHHHhCCCcEEecCCcccHhhhhh-------hHHHHHHcCcCceEEEEeccccccc
Confidence 66654 77888885444444444444444331 243200011122 23344556665432 1
Q ss_pred -cccC-CCCCCCCCCCCCcccHHHHHHHHHhCCCCCCc
Q 014369 353 -SVAG-LGGCPYAKGASGNVATEDVVYMLSGLGVETNV 388 (426)
Q Consensus 353 -Sv~G-lGecP~a~graGNa~lEevv~~L~~lG~~~~i 388 (426)
+.-| .=.- |-+.|++.-+++...|+++++...+
T Consensus 219 e~~~GqFrdv---pfGeG~Vdf~~~f~~lk~~ny~gpf 253 (287)
T COG3623 219 ETSPGQFRDV---PFGEGCVDFEECFKTLKQLNYRGPF 253 (287)
T ss_pred ccCCCccccC---CcCCcchhHHHHHHHHHHhCCCCce
Confidence 1111 0010 1136899999999999988776443
No 316
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=91.81 E-value=1.1 Score=44.77 Aligned_cols=119 Identities=15% Similarity=0.149 Sum_probs=87.7
Q ss_pred HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEcCC-CCCCC-HHHHHHHHHHHHHhcC
Q 014369 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI-SLGDT-IGVGT-PGTVVPMLEAVMAVVP 320 (426)
Q Consensus 244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I-~l~DT-~G~~~-P~~v~~li~~l~~~~p 320 (426)
.+++.+.||+.|+-|-+ |.+ .+.+++..+.+++.+.+...| .+... ..++. -..+..++..+.+.++
T Consensus 6 ~~~ll~~Ake~~yAvpA-----fN~-----~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~ 75 (286)
T COG0191 6 MKELLDKAKENGYAVPA-----FNI-----NNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYG 75 (286)
T ss_pred HHHHHHHHHHcCCceee-----eee-----cCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCC
Confidence 36788899999987752 322 356899999999999987744 33322 22333 4678888888888888
Q ss_pred CceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCC
Q 014369 321 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG 383 (426)
Q Consensus 321 ~~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG 383 (426)
+|+.+ |-|.|....-...|+++|.+ ++|+|...+=| -..-+.++|.+.+.+|
T Consensus 76 -vPV~l--HlDHg~~~~~~~~ai~~GFsSvMiDgS~~~~eE--------Ni~~tkevv~~ah~~g 129 (286)
T COG0191 76 -VPVAL--HLDHGASFEDCKQAIRAGFSSVMIDGSHLPFEE--------NIAITKEVVEFAHAYG 129 (286)
T ss_pred -CCEEE--ECCCCCCHHHHHHHHhcCCceEEecCCcCCHHH--------HHHHHHHHHHHHHHcC
Confidence 45665 56889899999999999988 77999998876 2355677887777544
No 317
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=91.74 E-value=7.6 Score=38.37 Aligned_cols=43 Identities=9% Similarity=0.109 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhCCCCEEE-EcCCCCCCCHHHHHHHHHHHHHh
Q 014369 276 PSKVAYVAKELHDMGCFEIS-LGDTIGVGTPGTVVPMLEAVMAV 318 (426)
Q Consensus 276 ~~~l~~~~~~l~~~Gad~I~-l~DT~G~~~P~~v~~li~~l~~~ 318 (426)
.+...++++.+.++|+|.+. ++=.....+++++.+.++.+.+.
T Consensus 82 t~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~ 125 (289)
T PF00701_consen 82 TEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADA 125 (289)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhh
Confidence 44555555555555555332 22333344555555555555533
No 318
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=91.67 E-value=14 Score=36.12 Aligned_cols=203 Identities=15% Similarity=0.142 Sum_probs=120.3
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHH---HhHh-cCCCcEEEEeCCh--------------hhH
Q 014369 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVME---AVRD-LEGARLPVLTPNL--------------KGF 207 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~---~i~~-~~~~~l~~l~~~~--------------~di 207 (426)
+.++.++-++.+.+.|+|.||+=.-.- ..+.+.+.+.. .++. .++..+..-+|.. +=+
T Consensus 26 ~~~e~~~~~~~~~~~~aD~vElRlD~l----~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 101 (253)
T PRK02412 26 TLEEVLAEALAISKYDADIIEWRADFL----EKISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEIALSDEEYLALI 101 (253)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEechh----hccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHHHHHH
Confidence 345555666777788999999953211 01112233333 3332 3345555444421 114
Q ss_pred HHHHHcC-CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369 208 EAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (426)
Q Consensus 208 ~~a~~~G-v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l 286 (426)
+.+++.| ++.|-|-....+ +.+.++++.+++.|.++.+ ++.. .....+.+.+.++.+.+
T Consensus 102 ~~~~~~~~~d~vDiEl~~~~---------------~~~~~l~~~~~~~~~kvI~--S~H~---f~~tP~~~~l~~~~~~~ 161 (253)
T PRK02412 102 KAVIKSGLPDYIDVELFSGK---------------DVVKEMVAFAHEHGVKVVL--SYHD---FEKTPPKEEIVERLRKM 161 (253)
T ss_pred HHHHhcCCCCEEEEeccCCh---------------HHHHHHHHHHHHcCCEEEE--eeCC---CCCCcCHHHHHHHHHHH
Confidence 5677788 898888754322 2345777788888887763 3320 01112336788899999
Q ss_pred HhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHh---cCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCC
Q 014369 287 HDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV---VPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYA 363 (426)
Q Consensus 287 ~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~---~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a 363 (426)
.++|+|.+-|+=+ .-++.++.+++....+. .+..++-.=+=-.+|. ..=+.+-..|....-+++.. ..
T Consensus 162 ~~~gaDivKia~~--a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~G~--~SRil~~~~GS~~ty~~~~~-~s---- 232 (253)
T PRK02412 162 ESLGADIVKIAVM--PQSEQDVLTLLNATREMKELYADQPLITMSMGKLGR--ISRLAGEVFGSSWTFASLDK-AS---- 232 (253)
T ss_pred HHhCCCEEEEEec--CCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCch--HHHcchhhhCCcceecCCCC-CC----
Confidence 9999999999866 34577888887766432 2223333222222222 33455566677776666553 22
Q ss_pred CCCCCcccHHHHHHHHHhCC
Q 014369 364 KGASGNVATEDVVYMLSGLG 383 (426)
Q Consensus 364 ~graGNa~lEevv~~L~~lG 383 (426)
+.|+.+++++...++.++
T Consensus 233 --APGQ~~~~el~~i~~~l~ 250 (253)
T PRK02412 233 --APGQISVEDLRRILEILH 250 (253)
T ss_pred --CCCCCCHHHHHHHHHHhc
Confidence 578999999999888765
No 319
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=91.63 E-value=5 Score=42.38 Aligned_cols=144 Identities=15% Similarity=0.153 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEec--C-CCCCccccccCHHHHHHHhHhcCC---CcEEEEeCC---hhhHHHHHHc-
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATS--F-VSPKWVPQLADARDVMEAVRDLEG---ARLPVLTPN---LKGFEAAIAA- 213 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~--~-~s~~~~p~~~D~~~v~~~i~~~~~---~~l~~l~~~---~~di~~a~~~- 213 (426)
..+.+..++-++.|.+.|++.|.+.- + ..++.... ....++++.+...++ +++....|. .+-++...++
T Consensus 174 sr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~-~~~~~Ll~~l~~~~g~~~i~~~~~~p~~l~~ell~~~~~~~ 252 (437)
T PRK14331 174 SRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGD-VPFSELLYAVAEIDGVERIRFTTGHPRDLDEDIIKAMADIP 252 (437)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCC-CCHHHHHHHHhcCCCccEEEEeccCcccCCHHHHHHHHcCC
Confidence 46888888888888889999887742 1 11111100 134556666554443 333333332 3345666666
Q ss_pred -CCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369 214 -GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (426)
Q Consensus 214 -Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~ 289 (426)
|...+++.+ +.|+.-++ .+++. ...+.+.++++.+++. |+.+.++++ +|.|.. +.+.+.+..+.+.++
T Consensus 253 ~~~~~l~igiqSgsd~vLk-~m~R~--~t~~~~~~~v~~lr~~~~gi~i~~d~I--vG~PgE---T~ed~~~tl~~l~~l 324 (437)
T PRK14331 253 QVCEHLHLPFQAGSDRILK-LMDRG--YTKEEYLEKIELLKEYIPDITFSTDII--VGFPTE---TEEDFEETLDVLKKV 324 (437)
T ss_pred ccCCceecccccCChHHHH-HcCCC--CCHHHHHHHHHHHHHhCCCCEEecCEE--EECCCC---CHHHHHHHHHHHHhc
Confidence 478888876 45554443 34443 1244556777788887 888877776 677765 467777777777888
Q ss_pred CCCEEEE
Q 014369 290 GCFEISL 296 (426)
Q Consensus 290 Gad~I~l 296 (426)
+.+.+.+
T Consensus 325 ~~~~i~~ 331 (437)
T PRK14331 325 EFEQVFS 331 (437)
T ss_pred Ccceeee
Confidence 8765443
No 320
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=91.54 E-value=4.1 Score=40.96 Aligned_cols=207 Identities=13% Similarity=0.105 Sum_probs=116.3
Q ss_pred HHHHHhCCCCeEEEecCC--CCCcccc--ccCHHHHHHHhHhcCC-CcEEEEeC---------C-hhhHHHHHHcCCCEE
Q 014369 154 IRRLVSSGLPVVEATSFV--SPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTP---------N-LKGFEAAIAAGAKEV 218 (426)
Q Consensus 154 ~~~L~~~Gv~~IEvG~~~--s~~~~p~--~~D~~~v~~~i~~~~~-~~l~~l~~---------~-~~di~~a~~~Gv~~V 218 (426)
++.+.++|++.|=.++.. ..-++|. +-+..++++.++++.+ +.+++++- + .+-++...++|+.-|
T Consensus 28 Ari~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi 107 (290)
T TIGR02321 28 AKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAI 107 (290)
T ss_pred HHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEE
Confidence 456678899999887641 1234553 3567788888876543 34444441 1 134677888999999
Q ss_pred EEeccCChHHHhhh----c-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--CCCCHHHHHHHHHHHHhCCC
Q 014369 219 AIFASASEAFSKSN----I-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--GAIPPSKVAYVAKELHDMGC 291 (426)
Q Consensus 219 ~i~~~~Sd~~~~~~----~-~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--~r~~~~~l~~~~~~l~~~Ga 291 (426)
+|-..+.+.+.-+. . =.+.++..++++.+.+. + .+..... +..+ |+ .....+...+-+++..++||
T Consensus 108 ~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a-~-~~~d~~I-~ART----Da~~~~~g~deAI~Ra~aY~eAGA 180 (290)
T TIGR02321 108 VMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAA-R-ADRDFVV-IARV----EALIAGLGQQEAVRRGQAYEEAGA 180 (290)
T ss_pred EEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHh-C-CCCCEEE-EEEe----ccccccCCHHHHHHHHHHHHHcCC
Confidence 99987655321111 1 13678888877655544 2 3332221 0110 11 11235677777888999999
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CCEEeecccCCCCCCCCCCCCCcc
Q 014369 292 FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTVDCSVAGLGGCPYAKGASGNV 370 (426)
Q Consensus 292 d~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~~VD~Sv~GlGecP~a~graGNa 370 (426)
|.|.+.= +.-+|+++..+++.+.... ++-+..=.+..+. +..+ -++| +..|-..... - ++-..
T Consensus 181 D~ifv~~--~~~~~~ei~~~~~~~~~p~---pv~~~~~~~p~~~-~~~l--~~lg~~~~v~~g~~~--~------~aa~~ 244 (290)
T TIGR02321 181 DAILIHS--RQKTPDEILAFVKSWPGKV---PLVLVPTAYPQLT-EADI--AALSKVGIVIYGNHA--I------RAAVG 244 (290)
T ss_pred CEEEecC--CCCCHHHHHHHHHhcCCCC---CeEEecCCCCCCC-HHHH--HHhcCCcEEEEChHH--H------HHHHH
Confidence 9999842 3467888888877763222 3433220111111 2233 3455 5654222221 2 45566
Q ss_pred cHHHHHHHHHhCC
Q 014369 371 ATEDVVYMLSGLG 383 (426)
Q Consensus 371 ~lEevv~~L~~lG 383 (426)
++++.+..++..|
T Consensus 245 a~~~~~~~i~~~g 257 (290)
T TIGR02321 245 AVREVFARIRRDG 257 (290)
T ss_pred HHHHHHHHHHHcC
Confidence 7777777776544
No 321
>PLN02591 tryptophan synthase
Probab=91.53 E-value=9.4 Score=37.56 Aligned_cols=152 Identities=12% Similarity=0.149 Sum_probs=87.8
Q ss_pred HHHHHHcCCCEEEEeccCChHHHhh-----------hcCCCHHHHHHHHHHHHHHHHh-cCCcEEEEEEeeecCCCCCCC
Q 014369 207 FEAAIAAGAKEVAIFASASEAFSKS-----------NINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEGAI 274 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~Sd~~~~~-----------~~~~s~~e~l~~~~~~v~~Ak~-~G~~v~~~v~~~fg~pd~~r~ 274 (426)
++...+.|+|.+-+-+|.||...-- +-|.+.++.++. ++..|+ ...++. +|.-+ .+.- .
T Consensus 22 ~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~----~~~~r~~~~~p~i--lm~Y~-N~i~-~- 92 (250)
T PLN02591 22 LRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISM----LKEVAPQLSCPIV--LFTYY-NPIL-K- 92 (250)
T ss_pred HHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHH----HHHHhcCCCCCEE--EEecc-cHHH-H-
Confidence 4556678999999999999842211 124444444443 444443 233332 33211 1110 1
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 014369 275 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV 354 (426)
Q Consensus 275 ~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv 354 (426)
--+.++++.+.++|++-+.++|- .+++..++.+..+++ .. .+-+-.--+.-..-...+++...|.=+. .|.
T Consensus 93 --~G~~~F~~~~~~aGv~GviipDL----P~ee~~~~~~~~~~~-gl-~~I~lv~Ptt~~~ri~~ia~~~~gFIY~-Vs~ 163 (250)
T PLN02591 93 --RGIDKFMATIKEAGVHGLVVPDL----PLEETEALRAEAAKN-GI-ELVLLTTPTTPTERMKAIAEASEGFVYL-VSS 163 (250)
T ss_pred --hHHHHHHHHHHHcCCCEEEeCCC----CHHHHHHHHHHHHHc-CC-eEEEEeCCCCCHHHHHHHHHhCCCcEEE-eeC
Confidence 12355788889999999999994 578888888887664 32 2333333333344556666666665553 244
Q ss_pred cCCCCCCCCCCCCC-cccHHHHHHHHHh
Q 014369 355 AGLGGCPYAKGASG-NVATEDVVYMLSG 381 (426)
Q Consensus 355 ~GlGecP~a~graG-Na~lEevv~~L~~ 381 (426)
.|.-+ .+++ ...+++.+..+++
T Consensus 164 ~GvTG-----~~~~~~~~~~~~i~~vk~ 186 (250)
T PLN02591 164 TGVTG-----ARASVSGRVESLLQELKE 186 (250)
T ss_pred CCCcC-----CCcCCchhHHHHHHHHHh
Confidence 55443 1334 4667888888885
No 322
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=91.52 E-value=20 Score=37.65 Aligned_cols=144 Identities=16% Similarity=0.184 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCC---CC-Ccc--ccccCHHHHHHHhHhcCCC---cEEEEeCC---hhhHHHHH
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFV---SP-KWV--PQLADARDVMEAVRDLEGA---RLPVLTPN---LKGFEAAI 211 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~---s~-~~~--p~~~D~~~v~~~i~~~~~~---~l~~l~~~---~~di~~a~ 211 (426)
..+.+..++-++.|.+.|++.|-+.... -. +.. +...+..++++.+..+++. ++..+-|. .+-++...
T Consensus 155 sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~~~g~~~ir~~s~~p~~~~~ell~~~~ 234 (420)
T PRK14339 155 SIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKLSEIEGLERIRFTSPHPLHMDDKFLEEFA 234 (420)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHHhcCCCccEEEECCCChhhcCHHHHHHHH
Confidence 4588998988999999999988774211 01 100 0112356666666554543 33222232 23456666
Q ss_pred Hc--CCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369 212 AA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (426)
Q Consensus 212 ~~--Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l 286 (426)
++ |...+++.+ +.|+.-++ .+|+.. ..+.+.++++.+++. |+.+..+++ +|.|..+ .+.+.+.++.+
T Consensus 235 ~~~~~~~~l~iglQSgsd~vLk-~M~R~~--t~~~~~~~v~~lr~~~p~i~i~~d~I--vGfPgET---eedf~~Tl~fl 306 (420)
T PRK14339 235 KNPKICKSIHMPLQSGSSEILK-AMKRGY--TKEWFLNRAEKLRALVPEVSISTDII--VGFPGES---DKDFEDTMDVL 306 (420)
T ss_pred cCCCccCceEeCCccCCHHHHH-hccCCC--CHHHHHHHHHHHHHHCCCCEEEEEEE--EECCCCC---HHHHHHHHHHH
Confidence 66 467888887 44554333 344422 244555667777776 666666665 6778764 56666666666
Q ss_pred HhCCCCEEE
Q 014369 287 HDMGCFEIS 295 (426)
Q Consensus 287 ~~~Gad~I~ 295 (426)
.+.+.+.+.
T Consensus 307 ~~l~~~~~~ 315 (420)
T PRK14339 307 EKVRFEQIF 315 (420)
T ss_pred HhcCCCEEe
Confidence 777766443
No 323
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=91.52 E-value=16 Score=38.58 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=85.8
Q ss_pred hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (426)
Q Consensus 206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~ 285 (426)
++++|.+.|++.|.+... +. ......+++++++.+.+..+.+....|...|...-|....=-.+++.+.++.+.
T Consensus 223 eL~rA~~LGa~~VV~HPG-s~-----~~~~~~ee~i~~i~e~L~~~la~~~gV~IlLENmag~g~~lG~~~eeL~~Iid~ 296 (413)
T PTZ00372 223 DLQRCEQLGIKLYNFHPG-ST-----VGQCSKEEGIKNIADCINKAHEETKSVIIVLENTAGQKNSVGSKFEDLRDIIAL 296 (413)
T ss_pred HHHHHHHcCCCEEEECCC-cC-----CCCCCHHHHHHHHHHHHHHHHhCcCCCEEEEecCCCCCCcccCCHHHHHHHHHh
Confidence 567888899998777533 21 112345778888888887776654445544553322111112467888888776
Q ss_pred HHhCCCCEEE-EcCCC-----CC--CCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCc-HHHHHHHHHHcCCCEEeeccc
Q 014369 286 LHDMGCFEIS-LGDTI-----GV--GTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQ-SLPNILISLQMGISTVDCSVA 355 (426)
Q Consensus 286 l~~~Gad~I~-l~DT~-----G~--~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~Gl-A~ANaLaAl~aGa~~VD~Sv~ 355 (426)
+.+. +++. .-||. |+ -+|+.+.++++.+.+.++ +---.+|+||..|- + +|.| -=.
T Consensus 297 v~~~--~rlGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk~~~G---------S~~D----RH~ 361 (413)
T PTZ00372 297 VEDK--SRVGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSKSDLG---------SGLD----RHE 361 (413)
T ss_pred cCCc--CCeEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCCCccC---------CCcc----ccc
Confidence 5321 2222 22553 32 367788888888877765 22367899998653 2 1223 122
Q ss_pred CCCCCCCCCCCCCcccHHHHHHHHH
Q 014369 356 GLGGCPYAKGASGNVATEDVVYMLS 380 (426)
Q Consensus 356 GlGecP~a~graGNa~lEevv~~L~ 380 (426)
.+|+ |+...+.+...++
T Consensus 362 ~IG~--------G~Ig~~~f~~l~~ 378 (413)
T PTZ00372 362 NIGK--------GKLGMETFKFIMN 378 (413)
T ss_pred CcCC--------CCcChHHHHHHHh
Confidence 3443 6777777777776
No 324
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=91.51 E-value=9.5 Score=40.57 Aligned_cols=144 Identities=11% Similarity=0.063 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEec--CCCC---CccccccCHHHHHHHhH-h---cCCCcEEE---EeCC---hhhHH
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATS--FVSP---KWVPQLADARDVMEAVR-D---LEGARLPV---LTPN---LKGFE 208 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~--~~s~---~~~p~~~D~~~v~~~i~-~---~~~~~l~~---l~~~---~~di~ 208 (426)
..+.+..++-++.|.+.|++.|-+.- +... ..........++++.+. . ..+..... +-|. .+-++
T Consensus 180 sr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ir~~s~~p~~i~~ell~ 259 (455)
T PRK14335 180 SRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEVTDQIRWIRFMSSHPKDLSDDLIA 259 (455)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHHHhhcccCCceEEEEeecCcccCCHHHHH
Confidence 46888888888999999998886632 1110 00001113455555552 1 12332222 2232 23455
Q ss_pred HHHH--cCCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369 209 AAIA--AGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVA 283 (426)
Q Consensus 209 ~a~~--~Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~ 283 (426)
...+ .|...+++.+ +.|+.-++ .+|+. ...+.+.++++.+++. |+.+.++++ +|.|..+ .+.+.+.+
T Consensus 260 ~m~~~~~gc~~l~iglQSgsd~vLk-~m~R~--~t~e~~~~~v~~ir~~~pgi~i~~d~I--vGfPgET---~edf~~Tl 331 (455)
T PRK14335 260 TIAQESRLCRLVHLPVQHGSNGVLK-RMNRS--YTREHYLSLVGKLKASIPNVALSTDIL--IGFPGET---EEDFEQTL 331 (455)
T ss_pred HHHhCCCCCCeEEEccCcCCHHHHH-HcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EeCCCCC---HHHHHHHH
Confidence 5555 4789999988 55665554 35553 2355667888888888 888777776 6778653 56677777
Q ss_pred HHHHhCCCCEEE
Q 014369 284 KELHDMGCFEIS 295 (426)
Q Consensus 284 ~~l~~~Gad~I~ 295 (426)
+.+.+.+.+.+.
T Consensus 332 ~~i~~l~~~~~~ 343 (455)
T PRK14335 332 DLMREVEFDSAF 343 (455)
T ss_pred HHHHhcCCCeEE
Confidence 777778776554
No 325
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=91.50 E-value=7.5 Score=41.21 Aligned_cols=155 Identities=16% Similarity=0.153 Sum_probs=90.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCC----CCCccccccCHHHHHHHhHhcCCC---cEEEEeCC---hhhHHHHHH-
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFV----SPKWVPQLADARDVMEAVRDLEGA---RLPVLTPN---LKGFEAAIA- 212 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~----s~~~~p~~~D~~~v~~~i~~~~~~---~l~~l~~~---~~di~~a~~- 212 (426)
..+.+..++=++.|.+.|++.|.+.-.. ..+.-+.-....++++.+..+++. ++..+.|. .+-++...+
T Consensus 176 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~~~g~~~ir~~~~~p~~i~~ell~~l~~~ 255 (446)
T PRK14337 176 SRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAALPGLERLRFTTPHPKDIAPEVIEAFGEL 255 (446)
T ss_pred eCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHhcCCCcEEEEccCCcccCCHHHHHHHHhC
Confidence 5688888888889999999988874211 000000001344555555544443 33333342 334555555
Q ss_pred -cCCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh
Q 014369 213 -AGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD 288 (426)
Q Consensus 213 -~Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~ 288 (426)
.+...+++.+ +.|+.-++ .+|+.. ..+.+.++++.+++. |+.+.++++ +|.|..+ .+.+.+..+.+.+
T Consensus 256 ~~~~~~l~iglQSgsd~vLk-~M~R~~--t~e~~~~~v~~lr~~~~~i~i~~d~I--vG~PgET---~ed~~~tl~~l~~ 327 (446)
T PRK14337 256 PNLCPRLHLPLQSGSDRILK-AMGRKY--DMARYLDIVTDLRAARPDIALTTDLI--VGFPGET---EEDFEQTLEAMRT 327 (446)
T ss_pred CcccCeEEECCCCCCHHHHH-hCCCCC--CHHHHHHHHHHHHHhCCCCeEEEeEE--EECCCCC---HHHHHHHHHHHHh
Confidence 3577888887 45554444 355531 234555677777776 566666666 6778664 6777777888888
Q ss_pred CCCCEEEE------cCCCCCCCHH
Q 014369 289 MGCFEISL------GDTIGVGTPG 306 (426)
Q Consensus 289 ~Gad~I~l------~DT~G~~~P~ 306 (426)
.+.+.+.+ +.|.....|.
T Consensus 328 ~~~~~~~~f~ysp~pgT~a~~~~~ 351 (446)
T PRK14337 328 VGFASSFSFCYSDRPGTRAEMLPG 351 (446)
T ss_pred cCCCeeEEEecCCCCCCccccCCC
Confidence 88775554 4555555443
No 326
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=91.44 E-value=14 Score=37.04 Aligned_cols=132 Identities=16% Similarity=0.109 Sum_probs=77.4
Q ss_pred hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHH-HhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA-KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (426)
Q Consensus 206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~A-k~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~ 284 (426)
.++.+++.|+..+.+.+.. . ...+.|.+.++.++.+.+.++.+ ++.|+.+..-++. + ...+++.+.+.++
T Consensus 77 ~~~e~~~~Gv~y~E~r~~p-~--~~~~~g~~~~~~~~~~~~~i~~a~~~~gi~~~li~~~-~-----r~~~~~~~~~~~~ 147 (324)
T TIGR01430 77 YVEKAAKDGVVYAEVFFDP-Q--LHTNRGISPDTVVEAVLDGLDEAERDFGIKSRLILCG-M-----RHKQPEAAEETLE 147 (324)
T ss_pred HHHHHHHcCCEEEEEEeCc-c--ccccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEE-e-----CCCCHHHHHHHHH
Confidence 4556677899777766442 1 12345778999999877777665 4568777644442 1 1135677777777
Q ss_pred HHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHH-HcCCCEE
Q 014369 285 ELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL-QMGISTV 350 (426)
Q Consensus 285 ~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl-~aGa~~V 350 (426)
.+.+.+.+.+.=.|..| ...|+.+..+++..++ . +.++.+|++.+.+. .+...++ +.|++++
T Consensus 148 ~~~~~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~-~-g~~i~~Ha~E~~~~--~~~~~~~~~~g~~ri 213 (324)
T TIGR01430 148 LAKPYKEQTIVGFGLAGDERGGPPPDFVRAFAIARE-L-GLHLTVHAGELGGP--ESVREALDDLGATRI 213 (324)
T ss_pred HHHhhccCcEEEecCCCCCCCCCHHHHHHHHHHHHH-C-CCCeEEecCCCCCh--HHHHHHHHHcCchhc
Confidence 76666654232223322 2235666666655554 2 35688898876332 2344455 5787643
No 327
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=91.42 E-value=7.2 Score=41.01 Aligned_cols=144 Identities=18% Similarity=0.196 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCC--C-CCccccccCHHHHHHHhHhcCC---CcEEEEeCC---hhhHHHHHHc-
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFV--S-PKWVPQLADARDVMEAVRDLEG---ARLPVLTPN---LKGFEAAIAA- 213 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~--s-~~~~p~~~D~~~v~~~i~~~~~---~~l~~l~~~---~~di~~a~~~- 213 (426)
..+.++.++=++.|.+.|++.|-+.-.. . ....+......++++.+...++ +++....|. .+-++...+.
T Consensus 152 srs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~i~~ell~~l~~~~ 231 (418)
T PRK14336 152 SRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHPKDISQKLIDAMAHLP 231 (418)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccChhhcCHHHHHHHHhcC
Confidence 5788888888899999999988775211 1 0001111234556666655544 233333342 2334544453
Q ss_pred -CCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369 214 -GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (426)
Q Consensus 214 -Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~ 289 (426)
+...+++.+ +.|+.-++ .+++.. ..+.+.++++.+++. |+.+.++++ +|.|..+ .+.+.+.++.+.+.
T Consensus 232 ~~~~~l~lglQSgsd~vLk-~M~R~~--~~~~~~~~i~~lr~~~pgi~i~~d~I--vGfPGET---~edf~~tl~fi~~~ 303 (418)
T PRK14336 232 KVCRSLSLPVQAGDDTILA-AMRRGY--TNQQYRELVERLKTAMPDISLQTDLI--VGFPSET---EEQFNQSYKLMADI 303 (418)
T ss_pred ccCCceecCCCcCCHHHHH-HhCCCC--CHHHHHHHHHHHHhhCCCCEEEEEEE--EECCCCC---HHHHHHHHHHHHhc
Confidence 477777776 44554443 333321 245566778888887 888887777 5667654 56677777777777
Q ss_pred CCCEEE
Q 014369 290 GCFEIS 295 (426)
Q Consensus 290 Gad~I~ 295 (426)
+.+.+.
T Consensus 304 ~~~~~~ 309 (418)
T PRK14336 304 GYDAIH 309 (418)
T ss_pred CCCEEE
Confidence 776654
No 328
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=91.40 E-value=2.7 Score=42.14 Aligned_cols=101 Identities=15% Similarity=0.105 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcCC-CCCCCHHHHHHHHHHHHHhcCC
Q 014369 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVPV 321 (426)
Q Consensus 244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~DT-~G~~~P~~v~~li~~l~~~~p~ 321 (426)
+.++.+.|++.|+-|-+ |.+ .+.+.+..+++++.+.++. +|.+... ..++....+..++..+.+....
T Consensus 4 ~k~ll~~A~~~~yAV~A-----fN~-----~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~V 73 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVPA-----FNI-----HNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNM 73 (282)
T ss_pred HHHHHHHHHHcCCeEEE-----EEe-----CCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCC
Confidence 46788899999987653 321 3578999999999999877 4444332 2334456677888888777753
Q ss_pred ceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCC
Q 014369 322 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGL 357 (426)
Q Consensus 322 ~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~Gl 357 (426)
|+.+| =|.|.-......|+++|.+ .+|+|-..+
T Consensus 74 -PValH--LDHg~~~e~i~~ai~~GFtSVM~DgS~lp~ 108 (282)
T TIGR01858 74 -PLALH--LDHHESLDDIRQKVHAGVRSAMIDGSHFPF 108 (282)
T ss_pred -CEEEE--CCCCCCHHHHHHHHHcCCCEEeecCCCCCH
Confidence 56655 5777788999999999998 568886644
No 329
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=91.31 E-value=9.4 Score=37.70 Aligned_cols=152 Identities=16% Similarity=0.203 Sum_probs=88.9
Q ss_pred HHHHHHcCCCEEEEeccCChHHHh----------h-hcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCC
Q 014369 207 FEAAIAAGAKEVAIFASASEAFSK----------S-NINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGA 273 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~Sd~~~~----------~-~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r 273 (426)
++...+.|+|.|-+-+|.||...- + +-|.+.++.+ +.++..|+. ..++. +|.-+ .|.- .
T Consensus 32 ~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~----~~~~~~r~~~~~~p~v--lm~Y~-N~i~-~ 103 (258)
T PRK13111 32 IKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVF----ELVREIREKDPTIPIV--LMTYY-NPIF-Q 103 (258)
T ss_pred HHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHH----HHHHHHHhcCCCCCEE--EEecc-cHHh-h
Confidence 455667899999999999884211 1 1133444444 444445533 33432 33211 1211 1
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369 274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 353 (426)
Q Consensus 274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S 353 (426)
. -+.++++.+.++|++.+.++|- .+++..++++.+++. +...|-+ +=.+.--.....+++...|.=++ .+
T Consensus 104 ~---G~e~f~~~~~~aGvdGviipDL----p~ee~~~~~~~~~~~-gl~~I~l-vap~t~~eri~~i~~~s~gfIY~-vs 173 (258)
T PRK13111 104 Y---GVERFAADAAEAGVDGLIIPDL----PPEEAEELRAAAKKH-GLDLIFL-VAPTTTDERLKKIASHASGFVYY-VS 173 (258)
T ss_pred c---CHHHHHHHHHHcCCcEEEECCC----CHHHHHHHHHHHHHc-CCcEEEE-eCCCCCHHHHHHHHHhCCCcEEE-Ee
Confidence 1 2345678888999999999994 678888988888764 4323433 33333345566677776665444 46
Q ss_pred ccCCCCCCCCCCCCC-cccHHHHHHHHHh
Q 014369 354 VAGLGGCPYAKGASG-NVATEDVVYMLSG 381 (426)
Q Consensus 354 v~GlGecP~a~graG-Na~lEevv~~L~~ 381 (426)
+.|..+ .+++ ...+++.+..+++
T Consensus 174 ~~GvTG-----~~~~~~~~~~~~i~~vk~ 197 (258)
T PRK13111 174 RAGVTG-----ARSADAADLAELVARLKA 197 (258)
T ss_pred CCCCCC-----cccCCCccHHHHHHHHHh
Confidence 666544 0222 2567888888886
No 330
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=91.22 E-value=9.4 Score=41.38 Aligned_cols=145 Identities=14% Similarity=0.158 Sum_probs=85.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecC---CCCCccccc-cCHHHHHHHhHhc--CCCcEEEEeCC---hhhHHHHHHcC
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQL-ADARDVMEAVRDL--EGARLPVLTPN---LKGFEAAIAAG 214 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~---~s~~~~p~~-~D~~~v~~~i~~~--~~~~l~~l~~~---~~di~~a~~~G 214 (426)
..+.++.++-++.|.+.|+..|.+..- ...+..... ....++++.+..+ +.+++....|. .+-++...+.|
T Consensus 240 sr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~P~~i~deli~~m~~~g 319 (509)
T PRK14327 240 SRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSHPRDFDDHLIEVLAKGG 319 (509)
T ss_pred eCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhCCCceEEEeecCcccCCHHHHHHHHhcC
Confidence 568888898889999999987776321 111100000 1234566665543 23344443342 23466666777
Q ss_pred --CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369 215 --AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (426)
Q Consensus 215 --v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~ 289 (426)
+..+++.+ +.|+.-++ .+|+.. ..+.+.++++.++++ ++.+..+++ +|.|..+ .+.+.+.++.+.+.
T Consensus 320 ~~~~~l~lgvQSgsd~vLk-~M~R~~--t~e~~~~~v~~lr~~~p~i~i~tdiI--vGfPgET---~edf~~Tl~~v~~l 391 (509)
T PRK14327 320 NLVEHIHLPVQSGSTEVLK-IMARKY--TRESYLELVRKIKEAIPNVALTTDII--VGFPNET---DEQFEETLSLYREV 391 (509)
T ss_pred CccceEEeccCCCCHHHHH-hcCCCC--CHHHHHHHHHHHHHhCCCcEEeeeEE--EeCCCCC---HHHHHHHHHHHHHc
Confidence 56888887 44554443 344421 234566778888887 455555555 6778764 56677777777788
Q ss_pred CCCEEEE
Q 014369 290 GCFEISL 296 (426)
Q Consensus 290 Gad~I~l 296 (426)
+.+.+.+
T Consensus 392 ~~d~~~~ 398 (509)
T PRK14327 392 GFDHAYT 398 (509)
T ss_pred CCCeEEE
Confidence 8765554
No 331
>PRK07360 FO synthase subunit 2; Reviewed
Probab=91.21 E-value=1.7 Score=44.93 Aligned_cols=78 Identities=18% Similarity=0.226 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC--HHHHHHHHHHHHHhcCCceEEEEe---------CCCcCcHHHHHH
Q 014369 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT--PGTVVPMLEAVMAVVPVEKLAVHL---------HDTYGQSLPNIL 340 (426)
Q Consensus 272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~--P~~v~~li~~l~~~~p~~~i~~H~---------HNd~GlA~ANaL 340 (426)
...+++.+.+.++.+.+.|+.+|.|..-.+... ++.+.++++.+++.+|. +.+|+ -.+.|+..-..+
T Consensus 89 y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~--i~i~a~s~~ei~~~~~~~G~~~~e~l 166 (371)
T PRK07360 89 FWLTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPD--IHLHAFSPMEVYFAAREDGLSYEEVL 166 (371)
T ss_pred eeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCC--cceeeCCHHHHHHHHhhcCCCHHHHH
Confidence 346899999999999999999999993222222 45688999999988875 44443 336788877766
Q ss_pred HHH-HcCCCEEe
Q 014369 341 ISL-QMGISTVD 351 (426)
Q Consensus 341 aAl-~aGa~~VD 351 (426)
..+ +||++.+.
T Consensus 167 ~~LkeAGld~~~ 178 (371)
T PRK07360 167 KALKDAGLDSMP 178 (371)
T ss_pred HHHHHcCCCcCC
Confidence 665 79999886
No 332
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=91.19 E-value=1.8 Score=43.39 Aligned_cols=124 Identities=18% Similarity=0.088 Sum_probs=76.1
Q ss_pred eCChhhHHHHHHcCCCEEEEeccC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHH
Q 014369 201 TPNLKGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV 279 (426)
Q Consensus 201 ~~~~~di~~a~~~Gv~~V~i~~~~-Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l 279 (426)
+-|.+..+.|-++|.+.|.+...+ ||.-.. . |.-+-...+.+. .++.+ -.++|.+ ..-..++
T Consensus 24 v~~~~~a~iae~~g~~~v~~~~~~psd~~~~-g-g~~Rm~~p~~I~-aIk~~--V~iPVig------------k~Righ~ 86 (293)
T PRK04180 24 VVNAEQAKIAEEAGAVAVMALERVPADIRAA-G-GVARMADPKMIE-EIMDA--VSIPVMA------------KARIGHF 86 (293)
T ss_pred eCCHHHHHHHHHhChHHHHHccCCCchHhhc-C-CeeecCCHHHHH-HHHHh--CCCCeEE------------eehhhHH
Confidence 346666777778888776665322 343211 1 222222222222 22222 2455542 2233444
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369 280 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 353 (426)
Q Consensus 280 ~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S 353 (426)
.+ ++.|.++|+|.| |-....+| ..+++..++..+. .+|-.-+- | +..++.++..||+.|-+|
T Consensus 87 ~E-a~~L~~~GvDiI---D~Te~lrp--ad~~~~~~K~~f~-~~fmad~~-~----l~EAlrai~~GadmI~Tt 148 (293)
T PRK04180 87 VE-AQILEALGVDYI---DESEVLTP--ADEEYHIDKWDFT-VPFVCGAR-N----LGEALRRIAEGAAMIRTK 148 (293)
T ss_pred HH-HHHHHHcCCCEE---eccCCCCc--hHHHHHHHHHHcC-CCEEccCC-C----HHHHHHHHHCCCCeeecc
Confidence 44 788999999999 88889999 5588999999883 33443333 2 567889999999999888
No 333
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=91.16 E-value=4.4 Score=36.63 Aligned_cols=95 Identities=25% Similarity=0.341 Sum_probs=65.1
Q ss_pred HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHh
Q 014369 151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSK 230 (426)
Q Consensus 151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~ 230 (426)
.-++++|.++|+++|-.|.+.+| +++ ++.|++..++.|.+. +.+..
T Consensus 30 kvia~~l~d~GfeVi~~g~~~tp---------~e~---------------------v~aA~~~dv~vIgvS-sl~g~--- 75 (143)
T COG2185 30 KVIARALADAGFEVINLGLFQTP---------EEA---------------------VRAAVEEDVDVIGVS-SLDGG--- 75 (143)
T ss_pred HHHHHHHHhCCceEEecCCcCCH---------HHH---------------------HHHHHhcCCCEEEEE-eccch---
Confidence 34889999999999999876653 222 246777888888886 33332
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369 231 SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299 (426)
Q Consensus 231 ~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT 299 (426)
..+.+..+++.+|+.|..-.. + .. .+-.+++. .+.+.++|+++|+-+.|
T Consensus 76 ---------h~~l~~~lve~lre~G~~~i~-v--~~----GGvip~~d----~~~l~~~G~~~if~pgt 124 (143)
T COG2185 76 ---------HLTLVPGLVEALREAGVEDIL-V--VV----GGVIPPGD----YQELKEMGVDRIFGPGT 124 (143)
T ss_pred ---------HHHHHHHHHHHHHHhCCcceE-E--ee----cCccCchh----HHHHHHhCcceeeCCCC
Confidence 355677889999999986331 1 12 23345555 45677899999998866
No 334
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=91.13 E-value=18 Score=36.19 Aligned_cols=173 Identities=15% Similarity=0.092 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH----hcCC-CcEEEEe--CCh----hhHHHHHH
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR----DLEG-ARLPVLT--PNL----KGFEAAIA 212 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~----~~~~-~~l~~l~--~~~----~di~~a~~ 212 (426)
.++.+.-.++++.+.+.|++-|=++-.... .+.| +.+|.++.++ ...+ +.+.+-+ .+. +-.+.|.+
T Consensus 17 ~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE--~~~L-s~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~ 93 (294)
T TIGR02313 17 DIDEEALRELIEFQIEGGSHAISVGGTSGE--PGSL-TLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEE 93 (294)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccCcc--cccC-CHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHH
Confidence 467888889999999999998776422211 1122 2233333333 2222 3333322 232 33466778
Q ss_pred cCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--CCCCHHHHHHHHHHHHhCC
Q 014369 213 AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--GAIPPSKVAYVAKELHDMG 290 (426)
Q Consensus 213 ~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--~r~~~~~l~~~~~~l~~~G 290 (426)
.|+|.+.+..|.. +.-+.++.++-+..+++.+. ++++.. +..|.. ...+++.+.++++. .
T Consensus 94 ~Gad~v~v~pP~y-------~~~~~~~l~~~f~~ia~a~~--~lpv~i-----Yn~P~~tg~~l~~~~l~~L~~~---~- 155 (294)
T TIGR02313 94 AGADAAMVIVPYY-------NKPNQEALYDHFAEVADAVP--DFPIII-----YNIPGRAAQEIAPKTMARLRKD---C- 155 (294)
T ss_pred cCCCEEEEcCccC-------CCCCHHHHHHHHHHHHHhcc--CCCEEE-----EeCchhcCcCCCHHHHHHHHhh---C-
Confidence 8999998876531 22355666666666665432 455543 223432 34567776665542 2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEE-EeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 291 CFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 291 ad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~-H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
...+.++||.|- ...+.++ .+..+. .+.+ .+++ ...+.++.+|++..
T Consensus 156 pnv~giK~ss~d--~~~~~~~----~~~~~~-~~~v~~G~d------~~~~~~l~~Ga~G~ 203 (294)
T TIGR02313 156 PNIVGAKESNKD--FEHLNHL----FLEAGR-DFLLFCGIE------LLCLPMLAIGAAGS 203 (294)
T ss_pred CCEEEEEeCCCC--HHHHHHH----HHhcCC-CeEEEEcch------HHHHHHHHCCCCEE
Confidence 468999999874 3444443 333443 2443 4333 55667888998644
No 335
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=91.12 E-value=12 Score=36.43 Aligned_cols=155 Identities=13% Similarity=0.122 Sum_probs=83.6
Q ss_pred hHHHHHHcCCCEEEEeccCChHHHhhhc-CCCHHHHH------HHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCH-
Q 014369 206 GFEAAIAAGAKEVAIFASASEAFSKSNI-NCSIEDSL------VRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPP- 276 (426)
Q Consensus 206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~-~~s~~e~l------~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~- 276 (426)
.++...++|+|.+++-+|.||...--.+ ....+.+| +...+.++..|+. .+++ .+|.-+ +|
T Consensus 19 ~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv--~lm~y~--------n~~ 88 (242)
T cd04724 19 ILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPI--VLMGYY--------NPI 88 (242)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCE--EEEEec--------CHH
Confidence 4566777899999999887774322111 00011222 2455667777754 4443 244211 22
Q ss_pred -HH-HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 014369 277 -SK-VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV 354 (426)
Q Consensus 277 -~~-l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv 354 (426)
.+ +.++++.+.++|++.|.++|- .+++..++++.+++.--. ..+=+=.+.-......+.....|.-++=+.-
T Consensus 89 ~~~G~~~fi~~~~~aG~~giiipDl----~~ee~~~~~~~~~~~g~~--~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~ 162 (242)
T cd04724 89 LQYGLERFLRDAKEAGVDGLIIPDL----PPEEAEEFREAAKEYGLD--LIFLVAPTTPDERIKKIAELASGFIYYVSRT 162 (242)
T ss_pred HHhCHHHHHHHHHHCCCcEEEECCC----CHHHHHHHHHHHHHcCCc--EEEEeCCCCCHHHHHHHHhhCCCCEEEEeCC
Confidence 11 345777888999999999996 578888899988875322 2222222222222222222223333332233
Q ss_pred cCCCCCCCCCCCCC-cccHHHHHHHHHhC
Q 014369 355 AGLGGCPYAKGASG-NVATEDVVYMLSGL 382 (426)
Q Consensus 355 ~GlGecP~a~graG-Na~lEevv~~L~~l 382 (426)
.|-|. ..+ ...+.+.+..++++
T Consensus 163 g~tG~------~~~~~~~~~~~i~~lr~~ 185 (242)
T cd04724 163 GVTGA------RTELPDDLKELIKRIRKY 185 (242)
T ss_pred CCCCC------ccCCChhHHHHHHHHHhc
Confidence 33343 443 35567777777763
No 336
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=91.02 E-value=4.6 Score=39.01 Aligned_cols=81 Identities=21% Similarity=0.236 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCc-HHHHHHHHHHcCCCEE
Q 014369 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQMGISTV 350 (426)
Q Consensus 272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~Gl-A~ANaLaAl~aGa~~V 350 (426)
+-.+.+.-.+.++.+.+.+.+.+.|.-........++.++++.+.+.+|.. .-.|. +|. ...+.+.++..|+|.+
T Consensus 63 Gg~~~~lR~~s~~~l~~~~~~g~~igGl~~~~~~~~~~~~l~~i~~~lp~~-~pr~l---~G~~~P~~i~~~v~~GvD~f 138 (238)
T PF01702_consen 63 GGDDKDLRRRSAEELSEDGFDGYAIGGLSPGEEKEERLEILEAIINNLPPD-KPRYL---LGVGTPEEILEAVYLGVDLF 138 (238)
T ss_dssp -TT-HHHHHHHHHHHHHSS-SEEEE-SSSSSSHHHHHHHHHHHHHHCS-TT-S-EEE---TTB-SHHHHHHHHHTT--EE
T ss_pred CCCCHHHHHHHHHHHHhcccccccccCCcCCCCHHHHHHHHHHHHhhCCcc-cceec---cCCCCHHHHHHHHHcCCcEE
Confidence 445566667778888887799999988776667899999999999988732 34455 333 5689999999999999
Q ss_pred eecccC
Q 014369 351 DCSVAG 356 (426)
Q Consensus 351 D~Sv~G 356 (426)
|++..-
T Consensus 139 Ds~~p~ 144 (238)
T PF01702_consen 139 DSSYPT 144 (238)
T ss_dssp EESHHH
T ss_pred cchHHH
Confidence 998753
No 337
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=90.97 E-value=8.7 Score=36.49 Aligned_cols=154 Identities=19% Similarity=0.222 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCccc--cccCHHHHHHHhHhc----CCCcEEEEeCChhhHHHHHHcCCC
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVP--QLADARDVMEAVRDL----EGARLPVLTPNLKGFEAAIAAGAK 216 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p--~~~D~~~v~~~i~~~----~~~~l~~l~~~~~di~~a~~~Gv~ 216 (426)
.++.+..++=+..+.+.|.++|++|.-++ |..-+ .-.+.+.+...++.+ .++.++.=+++.+-+++|++.|++
T Consensus 15 ~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~g~~ 94 (210)
T PF00809_consen 15 KFSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKAGAD 94 (210)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHTSS
T ss_pred ccCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHcCcc
Confidence 34556566678899999999999996542 32111 101122233333333 356666667888889999999999
Q ss_pred EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCH----HHHHHHHH-------H
Q 014369 217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP----SKVAYVAK-------E 285 (426)
Q Consensus 217 ~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~----~~l~~~~~-------~ 285 (426)
.|.-..+..+ ..++++.++++|..+. +++.-+.|..-..++ +.+.++.+ .
T Consensus 95 ~ind~~~~~~-----------------~~~~~~l~a~~~~~vV--~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~ 155 (210)
T PF00809_consen 95 IINDISGFED-----------------DPEMLPLAAEYGAPVV--LMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEA 155 (210)
T ss_dssp EEEETTTTSS-----------------STTHHHHHHHHTSEEE--EESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHH
T ss_pred eEEecccccc-----------------cchhhhhhhcCCCEEE--EEecccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 7766544321 2366677888888665 444332232222222 22333333 3
Q ss_pred HHhCCC--CEEEEcCCCCCC-CHHHHHHHHHHHH
Q 014369 286 LHDMGC--FEISLGDTIGVG-TPGTVVPMLEAVM 316 (426)
Q Consensus 286 l~~~Ga--d~I~l~DT~G~~-~P~~v~~li~~l~ 316 (426)
+.++|+ +.|.+==-+|.. ++.+-.++++.++
T Consensus 156 l~~~Gi~~~~Ii~DPgigf~~~~~~~~~~l~~i~ 189 (210)
T PF00809_consen 156 LEKAGIPRERIILDPGIGFGKDPEQNLELLRNIE 189 (210)
T ss_dssp HHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHH
T ss_pred HHHcCCCHHHEeeccccCcCCCHHHHHHHHHHHH
Confidence 445898 677775555553 2445555555444
No 338
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=90.96 E-value=3.2 Score=41.18 Aligned_cols=106 Identities=15% Similarity=0.214 Sum_probs=73.5
Q ss_pred CCCCHHHHHHHHHHHHhCC-C--CEEEEcCCCCCCCHHH------HHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHH
Q 014369 272 GAIPPSKVAYVAKELHDMG-C--FEISLGDTIGVGTPGT------VVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILI 341 (426)
Q Consensus 272 ~r~~~~~l~~~~~~l~~~G-a--d~I~l~DT~G~~~P~~------v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLa 341 (426)
+|-+...+..+.+.+...| + +++.|.|++-. ..+. +..-++.+|+.+| ..+|++=+|| +.-+..
T Consensus 124 TRKt~Pg~r~~~k~Av~~GGg~~HR~~L~d~vli-kdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s-----~eea~~ 197 (268)
T cd01572 124 TRKTTPGLRLLEKYAVRCGGGDNHRFGLSDAVLI-KDNHIAAAGSITEAVRRARAAAPFTLKIEVEVET-----LEQLKE 197 (268)
T ss_pred CCCCChhhHHHHHHHHHhCCCccccCCCcceeee-ehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECC-----HHHHHH
Confidence 4544455777777766654 3 58888887733 3333 3445788888887 5579999997 577888
Q ss_pred HHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCC--CC----CCcChhhHHHHHH
Q 014369 342 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG--VE----TNVDLRKLMLAGD 398 (426)
Q Consensus 342 Al~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG--~~----~~iDl~~L~~la~ 398 (426)
|+++|||+| .-||...|++-...+... +. -||+++.+.++++
T Consensus 198 A~~~gaDyI---------------~ld~~~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~ 245 (268)
T cd01572 198 ALEAGADII---------------MLDNMSPEELREAVALLKGRVLLEASGGITLENIRAYAE 245 (268)
T ss_pred HHHcCCCEE---------------EECCcCHHHHHHHHHHcCCCCcEEEECCCCHHHHHHHHH
Confidence 999999998 345667788777776542 32 3788888887665
No 339
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=90.96 E-value=2 Score=44.30 Aligned_cols=102 Identities=12% Similarity=0.094 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcCC-CCCCCHHHHHHHHHHHHHhcC
Q 014369 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVP 320 (426)
Q Consensus 243 ~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~DT-~G~~~P~~v~~li~~l~~~~p 320 (426)
.++++.+.|++.|+-|-+ |.+ .+.+.+..+++++.+.+.. +|.+... ..++-...+..++..+.+..+
T Consensus 5 ~~k~lL~~A~~~~yaV~A-----fN~-----~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~ 74 (347)
T PRK13399 5 TLRQLLDHAAENGYGVPA-----FNV-----NNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYP 74 (347)
T ss_pred cHHHHHHHHHHCCceEEE-----EEe-----CCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcC
Confidence 356788899999987653 321 4678999999999999977 4444332 333445668888888887775
Q ss_pred CceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccC
Q 014369 321 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAG 356 (426)
Q Consensus 321 ~~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~G 356 (426)
.+|+.+| =|.|.-......|+++|.+ .||+|-..
T Consensus 75 ~VPVaLH--LDHg~~~e~i~~Ai~~GFtSVMiDgS~l~ 110 (347)
T PRK13399 75 DIPICLH--QDHGNSPATCQSAIRSGFTSVMMDGSLLA 110 (347)
T ss_pred CCcEEEE--CCCCCCHHHHHHHHhcCCCEEEEeCCCCC
Confidence 3466655 5778788899999999998 67999874
No 340
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=90.95 E-value=11 Score=33.51 Aligned_cols=172 Identities=20% Similarity=0.143 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhCCCCeEEEecCCC-CCccccccCHHHHHHHhHhcCCCcEEEE--eCC-hhhH----HHHHHcCCCEEE
Q 014369 148 GVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVMEAVRDLEGARLPVL--TPN-LKGF----EAAIAAGAKEVA 219 (426)
Q Consensus 148 ~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~~-~~di----~~a~~~Gv~~V~ 219 (426)
+.-.++++.+.+.|++.|+++.... +.... ....+.++.+....+..+.+- ..+ ...+ +.+.++|++.|.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~ 89 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAE--TDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVE 89 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCC--CccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEE
Confidence 4668899999999999999997532 21111 111122333333234443332 222 2223 477889999998
Q ss_pred EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG 297 (426)
Q Consensus 220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~ 297 (426)
+....... .+...+.++.+++. ++.+...+.. .. +.+. . .+.++|++.|.+.
T Consensus 90 l~~~~~~~-------------~~~~~~~~~~i~~~~~~~~v~~~~~~-----~~---~~~~----~-~~~~~g~d~i~~~ 143 (200)
T cd04722 90 IHGAVGYL-------------AREDLELIRELREAVPDVKVVVKLSP-----TG---ELAA----A-AAEEAGVDEVGLG 143 (200)
T ss_pred EeccCCcH-------------HHHHHHHHHHHHHhcCCceEEEEECC-----CC---ccch----h-hHHHcCCCEEEEc
Confidence 87553211 12233455555554 6666543321 11 1111 0 1678899999987
Q ss_pred CCCCCCC----HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHH-HHHHHHHHcCCCEEee
Q 014369 298 DTIGVGT----PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGISTVDC 352 (426)
Q Consensus 298 DT~G~~~----P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~-ANaLaAl~aGa~~VD~ 352 (426)
...+... +......+..+++.. ..+|.. +-|... .|+..++++||+.|.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pi~~----~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 144 NGGGGGGGRDAVPIADLLLILAKRGS-KVPVIA----GGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCcCCCCCccCchhHHHHHHHHHhcC-CCCEEE----ECCCCCHHHHHHHHHhCCCEEEe
Confidence 6544322 111123344444433 234444 346666 7888888899998865
No 341
>PRK15108 biotin synthase; Provisional
Probab=90.92 E-value=1.9 Score=44.18 Aligned_cols=115 Identities=17% Similarity=0.113 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHH
Q 014369 235 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEA 314 (426)
Q Consensus 235 ~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~ 314 (426)
.+.+++++ .++.+++.|+.- |+.+.+.......+.+++.++++.+.+.|+. ++-|.|.++++...+|.++
T Consensus 76 ls~eEI~~----~a~~~~~~G~~~---i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~---v~~s~G~ls~e~l~~LkeA 145 (345)
T PRK15108 76 MEVEQVLE----SARKAKAAGSTR---FCMGAAWKNPHERDMPYLEQMVQGVKAMGLE---TCMTLGTLSESQAQRLANA 145 (345)
T ss_pred CCHHHHHH----HHHHHHHcCCCE---EEEEecCCCCCcchHHHHHHHHHHHHhCCCE---EEEeCCcCCHHHHHHHHHc
Confidence 34455554 445667788753 2222221222234568999999988887753 3468999998777776554
Q ss_pred -HHH------hcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369 315 -VMA------VVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG 359 (426)
Q Consensus 315 -l~~------~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe 359 (426)
+.. ..|..-=.+|.+.++.--+.....|.++|...-.+-+.|+||
T Consensus 146 Gld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgE 197 (345)
T PRK15108 146 GLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGE 197 (345)
T ss_pred CCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCC
Confidence 220 012111124666788888899999999999766677999998
No 342
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=90.89 E-value=8.4 Score=38.50 Aligned_cols=90 Identities=14% Similarity=0.177 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCC-----------CCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHH
Q 014369 274 IPPSKVAYVAKELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 342 (426)
Q Consensus 274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G-----------~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaA 342 (426)
.+++.+.+.++.+.+.|++.|-+--+-+ .++++.+..+++..++. . .++.+|++.+ .....+
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~-g-~~v~~H~~~~-----~~i~~~ 189 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKA-G-LYVAAHAYGA-----EAIRRA 189 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHc-C-CEEEEEeCCH-----HHHHHH
Confidence 4578888899999999999887664432 46788888888887764 3 4688888754 456678
Q ss_pred HHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369 343 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE 385 (426)
Q Consensus 343 l~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~ 385 (426)
+++|++.|+= +..-.++.+..|++.|+.
T Consensus 190 l~~G~~~i~H---------------~~~~~~~~~~~l~~~g~~ 217 (342)
T cd01299 190 IRAGVDTIEH---------------GFLIDDETIELMKEKGIF 217 (342)
T ss_pred HHcCCCEEee---------------cCCCCHHHHHHHHHCCcE
Confidence 8899886521 111235666677766653
No 343
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=90.88 E-value=11 Score=38.09 Aligned_cols=122 Identities=15% Similarity=0.119 Sum_probs=72.3
Q ss_pred CCh-hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369 202 PNL-KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA 280 (426)
Q Consensus 202 ~~~-~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~ 280 (426)
+.. +-++.+++.+++.|.+.... + .+.++..|+.|+.|.+.+. +.
T Consensus 74 ~~~~~~~~~~~~~~v~~v~~~~g~-p------------------~~~i~~lk~~g~~v~~~v~-----------s~---- 119 (307)
T TIGR03151 74 PFVDELVDLVIEEKVPVVTTGAGN-P------------------GKYIPRLKENGVKVIPVVA-----------SV---- 119 (307)
T ss_pred CCHHHHHHHHHhCCCCEEEEcCCC-c------------------HHHHHHHHHcCCEEEEEcC-----------CH----
Confidence 443 34677889999988764321 1 1467778888987653221 22
Q ss_pred HHHHHHHhCCCCEEEEc--CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE--eecccC
Q 014369 281 YVAKELHDMGCFEISLG--DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV--DCSVAG 356 (426)
Q Consensus 281 ~~~~~l~~~Gad~I~l~--DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V--D~Sv~G 356 (426)
+.++.+.++|+|.|.+- +.-|...+.....++..+++.++. +|-.-+.=..+-. +.+|+..||+.| -+.+..
T Consensus 120 ~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~i-PviaaGGI~~~~~---~~~al~~GA~gV~iGt~f~~ 195 (307)
T TIGR03151 120 ALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSI-PVIAAGGIADGRG---MAAAFALGAEAVQMGTRFLC 195 (307)
T ss_pred HHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCC-CEEEECCCCCHHH---HHHHHHcCCCEeecchHHhc
Confidence 34677888999999872 223332222346778888877653 5555543333333 455666899855 444555
Q ss_pred CCCCC
Q 014369 357 LGGCP 361 (426)
Q Consensus 357 lGecP 361 (426)
--||+
T Consensus 196 t~Es~ 200 (307)
T TIGR03151 196 AKECN 200 (307)
T ss_pred ccccC
Confidence 55543
No 344
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=90.88 E-value=6.3 Score=39.12 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=57.4
Q ss_pred HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l 286 (426)
++.+.+.-...+-+++.++.. .++.+.+.++.|++.|..... ...|.-.+.+.+.+.+..+.+
T Consensus 60 ~~~~~~~~~~~~~viagv~~~------------~~~~ai~~a~~a~~~Gad~v~-----~~~P~y~~~~~~~i~~~~~~v 122 (288)
T cd00954 60 AEIVAEAAKGKVTLIAHVGSL------------NLKESQELAKHAEELGYDAIS-----AITPFYYKFSFEEIKDYYREI 122 (288)
T ss_pred HHHHHHHhCCCCeEEeccCCC------------CHHHHHHHHHHHHHcCCCEEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 455555433456666655441 234455677788999987542 124555556677777777766
Q ss_pred HhC--CCC--EEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEE-eCCC
Q 014369 287 HDM--GCF--EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVH-LHDT 331 (426)
Q Consensus 287 ~~~--Gad--~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H-~HNd 331 (426)
.++ +.. .-+++...|.-.+.+ ++..|.+ .|.+ +++. ...|
T Consensus 123 ~~a~~~lpi~iYn~P~~tg~~l~~~---~~~~L~~-~pni-vgiK~s~~d 167 (288)
T cd00954 123 IAAAASLPMIIYHIPALTGVNLTLE---QFLELFE-IPNV-IGVKFTATD 167 (288)
T ss_pred HHhcCCCCEEEEeCccccCCCCCHH---HHHHHhc-CCCE-EEEEeCCCC
Confidence 553 333 334667777655543 3444443 5653 5653 3444
No 345
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=90.83 E-value=1.8 Score=43.60 Aligned_cols=83 Identities=14% Similarity=0.059 Sum_probs=71.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEEeC-CCcCcHHHHHHHHHHcC
Q 014369 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHLH-DTYGQSLPNILISLQMG 346 (426)
Q Consensus 272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H~H-Nd~GlA~ANaLaAl~aG 346 (426)
+..|.+.+.++++.+.+.|++-|.+.-|+| .++.++-.++++.+++... .++|-+|.- ++.--++..+..|-++|
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~G 103 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLG 103 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhC
Confidence 578999999999999999999999999999 5678888889988888765 456777774 78889999999999999
Q ss_pred CCEEeecc
Q 014369 347 ISTVDCSV 354 (426)
Q Consensus 347 a~~VD~Sv 354 (426)
|+.|=..-
T Consensus 104 ad~vlv~~ 111 (309)
T cd00952 104 ADGTMLGR 111 (309)
T ss_pred CCEEEECC
Confidence 99876553
No 346
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=90.79 E-value=1.4 Score=41.20 Aligned_cols=99 Identities=13% Similarity=0.088 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEE--EeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 273 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV--HLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 273 r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~--H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
..+++...++++.+ +-|++.|-+ +.-..+|.. .+.++.+++.+|+..+.+ |.+ |-| .-.+-.+.++||+.|
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~~iev--~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~-d~~--~~~~~~~~~~Gad~i 80 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVDIIEI--GTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTM-DAG--EYEAEQAFAAGADIV 80 (206)
T ss_pred CCCHHHHHHHHHHc-ccCeeEEEe--CCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeec-cch--HHHHHHHHHcCCCEE
Confidence 35788999999988 788887776 212333333 577888988887444554 455 333 225677899999988
Q ss_pred eecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcC
Q 014369 351 DCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVD 389 (426)
Q Consensus 351 D~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iD 389 (426)
-.- + + +++..+++++...+++|....++
T Consensus 81 ~vh--~--~-------~~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 81 TVL--G--V-------ADDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EEe--c--c-------CCHHHHHHHHHHHHHcCCEEEEE
Confidence 532 1 2 23344577777777777766543
No 347
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=90.79 E-value=13 Score=39.29 Aligned_cols=144 Identities=15% Similarity=0.151 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc---cccccCHHHHHHHhHhcCCCcE---EEEeCC---hhhHHHHHHcC
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKW---VPQLADARDVMEAVRDLEGARL---PVLTPN---LKGFEAAIAAG 214 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~---~p~~~D~~~v~~~i~~~~~~~l---~~l~~~---~~di~~a~~~G 214 (426)
..+.++.++=++.|.+.|++.|-+.-.....+ .....+..++++.+..+++... ....|. .+-++.+.++|
T Consensus 168 sr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~p~~~~~ell~~l~~~~ 247 (434)
T PRK14330 168 SRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKIEGIERIWFLTSYPTDFSDELIEVIANSP 247 (434)
T ss_pred cCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHhcCCceEEEEecCChhhcCHHHHHHHhcCC
Confidence 56788888888888889999876642100000 0011234455555544454422 111122 23455556666
Q ss_pred --CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369 215 --AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (426)
Q Consensus 215 --v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~ 289 (426)
...+++.+ +.|+--++ .+|+.. ..+.+.++++.+++. |+.+.++++ +|.|.. +.+.+.+.++.+.+.
T Consensus 248 ~~~~~l~iglQSgsd~vLk-~M~R~~--~~~~~~~~i~~lr~~~~~i~i~~d~I--vGfPgE---T~edf~~tl~fi~~~ 319 (434)
T PRK14330 248 KVAKSIHLPVQSGSNRILK-LMNRRY--TREEYLELIEKIRSKVPDASISSDII--VGFPTE---TEEDFMETVDLVEKA 319 (434)
T ss_pred cccCceecCcCCCCHHHHH-hcCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEE--EECCCC---CHHHHHHHHHHHHhc
Confidence 56788876 44554333 445532 345666788888886 666776665 677865 456777777778888
Q ss_pred CCCEEE
Q 014369 290 GCFEIS 295 (426)
Q Consensus 290 Gad~I~ 295 (426)
+.+.+.
T Consensus 320 ~~~~~~ 325 (434)
T PRK14330 320 QFERLN 325 (434)
T ss_pred CCCEEe
Confidence 877665
No 348
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=90.77 E-value=19 Score=36.02 Aligned_cols=183 Identities=14% Similarity=0.116 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHH----hCCCCeEEEecCC-----CCCcc--ccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcC
Q 014369 146 PTGVKVELIRRLV----SSGLPVVEATSFV-----SPKWV--PQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAG 214 (426)
Q Consensus 146 ~~~~ki~I~~~L~----~~Gv~~IEvG~~~-----s~~~~--p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~G 214 (426)
+.++.+++++.|. ++|++.+==|+|- +|... |.+...-.+++.++.--++.+..=+-...+++.+.+.
T Consensus 28 s~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~~GlpvvTeV~~~~~~~~~ae~- 106 (281)
T PRK12457 28 SLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKARFGVPVITDVHEVEQAAPVAEV- 106 (281)
T ss_pred CHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHhhh-
Confidence 6678888999886 5999886555542 22222 2221222334444433455544444567888888888
Q ss_pred CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 014369 215 AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI 294 (426)
Q Consensus 215 v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I 294 (426)
+|.+.|... +..+ .++++.+.+.|..|- |-. .--.+|++....++.+...|...|
T Consensus 107 vDilQIgAr-----~~rn------------tdLL~a~~~t~kpV~--lKr------Gqf~s~~e~~~aae~i~~~Gn~~v 161 (281)
T PRK12457 107 ADVLQVPAF-----LARQ------------TDLVVAIAKTGKPVN--IKK------PQFMSPTQMKHVVSKCREAGNDRV 161 (281)
T ss_pred CeEEeeCch-----hhch------------HHHHHHHhccCCeEE--ecC------CCcCCHHHHHHHHHHHHHcCCCeE
Confidence 899998642 1111 256666777777664 221 112467888899999999999988
Q ss_pred EEcCCC---CCCC-HHHHHHHHHHHHHhcCCceEEE---Ee-----------CCCcCcHHHHHHHHHHcCCCEEeeccc
Q 014369 295 SLGDTI---GVGT-PGTVVPMLEAVMAVVPVEKLAV---HL-----------HDTYGQSLPNILISLQMGISTVDCSVA 355 (426)
Q Consensus 295 ~l~DT~---G~~~-P~~v~~li~~l~~~~p~~~i~~---H~-----------HNd~GlA~ANaLaAl~aGa~~VD~Sv~ 355 (426)
.|+.=- |+-. +.++.. |..+++..+..|+-+ |. =-+.-+-..-+.+|+.+|||.+=.=+.
T Consensus 162 ilcERG~~fgy~~~~~D~~~-ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEvH 239 (281)
T PRK12457 162 ILCERGSSFGYDNLVVDMLG-FRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEAH 239 (281)
T ss_pred EEEeCCCCCCCCCcccchHH-HHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEec
Confidence 888631 2221 122222 334555433334444 54 334455678899999999996644443
No 349
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=90.77 E-value=2.7 Score=41.63 Aligned_cols=107 Identities=15% Similarity=0.210 Sum_probs=70.4
Q ss_pred CCCCHHHHHHHHHHHHhCC-C--CEEEEcCCCCCCCHH-----HHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHH
Q 014369 272 GAIPPSKVAYVAKELHDMG-C--FEISLGDTIGVGTPG-----TVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILIS 342 (426)
Q Consensus 272 ~r~~~~~l~~~~~~l~~~G-a--d~I~l~DT~G~~~P~-----~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaA 342 (426)
+|-+...+..+.+.+...| + +++.|.|++-+-.=. .+..-++.+|+..| ..+|++-+|+ ..-++.|
T Consensus 123 TRKt~Pg~r~~~k~Av~~GGg~~hR~~L~d~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t-----~eea~~A 197 (269)
T cd01568 123 TRKTTPGLRLLEKYAVRAGGGDNHRLGLSDAVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVET-----LEEAEEA 197 (269)
T ss_pred cCCCChhhHHHHHHHHHhCCCccccCCCcceeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCC-----HHHHHHH
Confidence 4544455777777666654 3 478888876542211 23456788888887 6679999987 6788899
Q ss_pred HHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhC----CC----CCCcChhhHHHHHH
Q 014369 343 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL----GV----ETNVDLRKLMLAGD 398 (426)
Q Consensus 343 l~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~l----G~----~~~iDl~~L~~la~ 398 (426)
+++|+|+| .-||...|++-...+.. .+ .-||+++.+.++++
T Consensus 198 ~~~gaD~I---------------~ld~~~~e~l~~~v~~i~~~~~i~i~asGGIt~~ni~~~a~ 246 (269)
T cd01568 198 LEAGADII---------------MLDNMSPEELKEAVKLLKGLPRVLLEASGGITLENIRAYAE 246 (269)
T ss_pred HHcCCCEE---------------EECCCCHHHHHHHHHHhccCCCeEEEEECCCCHHHHHHHHH
Confidence 99999998 34555556665544432 12 13688888877654
No 350
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=90.76 E-value=2.4 Score=40.85 Aligned_cols=89 Identities=20% Similarity=0.240 Sum_probs=67.4
Q ss_pred HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l 286 (426)
+....+.|.+.|.+|- ..- ...++.++.+++.|-++|+.++ | .+-.|.+.+.++.+.+
T Consensus 141 iaml~dmG~~SiKffP-M~G-----------l~~leE~~avA~aca~~g~~lE---------P-TGGIdl~Nf~~I~~i~ 198 (236)
T TIGR03581 141 IAMLKDMGGSSVKFFP-MGG-----------LKHLEEYAAVAKACAKHGFYLE---------P-TGGIDLDNFEEIVQIA 198 (236)
T ss_pred HHHHHHcCCCeeeEee-cCC-----------cccHHHHHHHHHHHHHcCCccC---------C-CCCccHHhHHHHHHHH
Confidence 4455678999999882 111 1346777888999999998654 3 4567999999999999
Q ss_pred HhCCCCEE-------EEcCCCCCCCHHHHHHHHHHHHH
Q 014369 287 HDMGCFEI-------SLGDTIGVGTPGTVVPMLEAVMA 317 (426)
Q Consensus 287 ~~~Gad~I-------~l~DT~G~~~P~~v~~li~~l~~ 317 (426)
.++|+..| .|--..|...|++|++|+..+++
T Consensus 199 ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k~ 236 (236)
T TIGR03581 199 LDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVKK 236 (236)
T ss_pred HHcCCCeeccccceeccccccCCCCHHHHHHHHHHhhC
Confidence 99998654 24456799999999999998763
No 351
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=90.74 E-value=14 Score=37.00 Aligned_cols=77 Identities=16% Similarity=0.088 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEE----cCC---CCC-----CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHH
Q 014369 274 IPPSKVAYVAKELHDMGCFEISL----GDT---IGV-----GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 341 (426)
Q Consensus 274 ~~~~~l~~~~~~l~~~Gad~I~l----~DT---~G~-----~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLa 341 (426)
.+++.+.++++.+.+.|+|.|.| +.+ -|. -.|+.+.++++.+++... .||.+-..-+.---..-+-+
T Consensus 110 ~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~Pv~vKl~~~~~~~~~~a~~ 188 (299)
T cd02940 110 YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVK-IPVIAKLTPNITDIREIARA 188 (299)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcC-CCeEEECCCCchhHHHHHHH
Confidence 46789999999999899987776 233 121 469999999999998764 35667655444333344455
Q ss_pred HHHcCCCEEe
Q 014369 342 SLQMGISTVD 351 (426)
Q Consensus 342 Al~aGa~~VD 351 (426)
+.++||+.|-
T Consensus 189 ~~~~Gadgi~ 198 (299)
T cd02940 189 AKEGGADGVS 198 (299)
T ss_pred HHHcCCCEEE
Confidence 7789999764
No 352
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=90.73 E-value=5.5 Score=40.04 Aligned_cols=138 Identities=17% Similarity=0.114 Sum_probs=84.1
Q ss_pred ChhhHHHHHHcCCCEEEEec-cCChHHHhhhc-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369 203 NLKGFEAAIAAGAKEVAIFA-SASEAFSKSNI-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA 280 (426)
Q Consensus 203 ~~~di~~a~~~Gv~~V~i~~-~~Sd~~~~~~~-~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~ 280 (426)
+--..+.+.++|.+-|.+.= .++-.+-.--. ..+.++.++.+.++++.. .++|.+.+-.-| -++..+.
T Consensus 24 D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~---~lPv~aD~d~Gy-------G~~~~v~ 93 (290)
T TIGR02321 24 NPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTV---SIPLIADIDTGF-------GNAVNVH 93 (290)
T ss_pred CHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhcc---CCCEEEECCCCC-------CCcHHHH
Confidence 33345566677888666541 11110000001 247788888887766554 577775553322 2333688
Q ss_pred HHHHHHHhCCCCEEEEcCCC----------C---CCCHHHHHHHHHHHHHhcCCceEEEEeCC-------CcCcHHHHHH
Q 014369 281 YVAKELHDMGCFEISLGDTI----------G---VGTPGTVVPMLEAVMAVVPVEKLAVHLHD-------TYGQSLPNIL 340 (426)
Q Consensus 281 ~~~~~l~~~Gad~I~l~DT~----------G---~~~P~~v~~li~~l~~~~p~~~i~~H~HN-------d~GlA~ANaL 340 (426)
+.++.+.++|+.-|.|-|.+ | +..++++.+-|++.++.-.+..+-+=.-- .+--++.-+.
T Consensus 94 ~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~ 173 (290)
T TIGR02321 94 YVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQ 173 (290)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHH
Confidence 99999999999999999975 1 34667777777777765322223332221 2245777778
Q ss_pred HHHHcCCCEE
Q 014369 341 ISLQMGISTV 350 (426)
Q Consensus 341 aAl~aGa~~V 350 (426)
+-.+||||.|
T Consensus 174 aY~eAGAD~i 183 (290)
T TIGR02321 174 AYEEAGADAI 183 (290)
T ss_pred HHHHcCCCEE
Confidence 8889999966
No 353
>PRK10481 hypothetical protein; Provisional
Probab=90.73 E-value=8.6 Score=37.28 Aligned_cols=130 Identities=25% Similarity=0.265 Sum_probs=78.5
Q ss_pred CCccccCCCCCCCCCHHHHHH----HHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCC--hh
Q 014369 132 VGPRDGLQNEKNTVPTGVKVE----LIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPN--LK 205 (426)
Q Consensus 132 ~TLRDG~Q~~~~~f~~~~ki~----I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~--~~ 205 (426)
+=||||.|. .++.+...+ .+..|++.|++.|=+.-+..- |.+.. .+...+.|. ..
T Consensus 60 trL~dG~~v---~~s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdf---p~l~a-------------~r~~l~~P~~~i~ 120 (224)
T PRK10481 60 TRLNDGQQV---HVSKQKVERDLQSVIEVLDNQGYDVILLLCTGEF---PSLTA-------------RNAILLEPSRILP 120 (224)
T ss_pred EEecCCCEE---EEEHHHHHHHHHHHHHHHHhCCCCEEEEEecCCC---CCccc-------------cCccccCchhhHH
Confidence 569999998 566655443 566788899999888654431 11100 011111121 12
Q ss_pred hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (426)
Q Consensus 206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~ 285 (426)
.+-.|+..| +.|.+..+.-+ .+.+..++-++.|+++.... ..|+. .+++.+.+.++.
T Consensus 121 ~lv~Al~~g-~riGVitP~~~----------------qi~~~~~kw~~~G~~v~~~~----aspy~--~~~~~l~~aa~~ 177 (224)
T PRK10481 121 PLVAAIVGG-HQVGVIVPVEE----------------QLAQQAQKWQVLQKPPVFAL----ASPYH--GSEEELIDAGKE 177 (224)
T ss_pred HHHHHhcCC-CeEEEEEeCHH----------------HHHHHHHHHHhcCCceeEee----cCCCC--CCHHHHHHHHHH
Confidence 333343334 78888877432 22344455566699887322 23542 567889999999
Q ss_pred HHhCCCCEEEEcCCCCCCC
Q 014369 286 LHDMGCFEISLGDTIGVGT 304 (426)
Q Consensus 286 l~~~Gad~I~l~DT~G~~~ 304 (426)
+.+.|+|.|.+ |-.|+.+
T Consensus 178 L~~~gaD~Ivl-~C~G~~~ 195 (224)
T PRK10481 178 LLDQGADVIVL-DCLGYHQ 195 (224)
T ss_pred hhcCCCCEEEE-eCCCcCH
Confidence 99999998866 5667766
No 354
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=90.66 E-value=4.2 Score=41.01 Aligned_cols=136 Identities=13% Similarity=0.136 Sum_probs=84.1
Q ss_pred hhHHHHHHcCCCEEEEe-ccCChH-HHhhhc-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369 205 KGFEAAIAAGAKEVAIF-ASASEA-FSKSNI-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 281 (426)
Q Consensus 205 ~di~~a~~~Gv~~V~i~-~~~Sd~-~~~~~~-~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~ 281 (426)
-..+.+.++|.+-+.+. ..++-. +-.--. ..+.++.++.+.++++. ..++|.+.+-.-| -++..+.+
T Consensus 27 ~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~---~~lPv~aD~dtGy-------G~~~~v~r 96 (294)
T TIGR02319 27 LSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLA---VDVPVIMDADAGY-------GNAMSVWR 96 (294)
T ss_pred HHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhc---cCCCEEEECCCCC-------CCcHHHHH
Confidence 34566677898877663 111111 000011 24677888877766654 3677775554322 23344788
Q ss_pred HHHHHHhCCCCEEEEcCCCC-----------CCCHHHHHHHHHHHHHhcCCceEEEE------eCCCcCcHHHHHHHHHH
Q 014369 282 VAKELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVVPVEKLAVH------LHDTYGQSLPNILISLQ 344 (426)
Q Consensus 282 ~~~~l~~~Gad~I~l~DT~G-----------~~~P~~v~~li~~l~~~~p~~~i~~H------~HNd~GlA~ANaLaAl~ 344 (426)
.++.+.++|+..|.|-|.++ +..+++....|++.++.-.+..+-+= ....+--++.-+.+-.+
T Consensus 97 ~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~e 176 (294)
T TIGR02319 97 ATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVA 176 (294)
T ss_pred HHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHH
Confidence 99999999999999999874 34566677777777764322112221 12234567788888889
Q ss_pred cCCCEE
Q 014369 345 MGISTV 350 (426)
Q Consensus 345 aGa~~V 350 (426)
+|||.|
T Consensus 177 AGAD~i 182 (294)
T TIGR02319 177 AGADCI 182 (294)
T ss_pred hCCCEE
Confidence 999966
No 355
>PRK15063 isocitrate lyase; Provisional
Probab=90.54 E-value=10 Score=40.08 Aligned_cols=200 Identities=15% Similarity=0.079 Sum_probs=119.6
Q ss_pred hhHHHHHHcCCCEEEEeccCCh----HHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC-----------
Q 014369 205 KGFEAAIAAGAKEVAIFASASE----AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP----------- 269 (426)
Q Consensus 205 ~di~~a~~~Gv~~V~i~~~~Sd----~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p----------- 269 (426)
+-++..+++|+.-|+|-..+.. -|...+-=.+.++.++++..+...+..+|.+.. -+..+-...
T Consensus 165 ~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~v-IiARTDA~aa~li~s~~d~r 243 (428)
T PRK15063 165 ELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTL-VIARTDAEAADLLTSDVDER 243 (428)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeE-EEEECCcccccccccccccc
Confidence 3467778999999999987642 122222124789999998776666666776632 122211000
Q ss_pred -----CCCC---------CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcC--
Q 014369 270 -----VEGA---------IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG-- 333 (426)
Q Consensus 270 -----d~~r---------~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~G-- 333 (426)
...| ...+...+-+++..+ |||.|.+. .|.-.+++++++.+.++..+|+..+..=+--.+-
T Consensus 244 D~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~E--t~~~d~ee~~~fa~~v~~~~P~~~layn~sPsfnW~ 320 (428)
T PRK15063 244 DRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCE--TSTPDLEEARRFAEAIHAKFPGKLLAYNCSPSFNWK 320 (428)
T ss_pred ccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeC--CCCCCHHHHHHHHHhhcccCccceeecCCCCCcccc
Confidence 0000 123344444555556 99999775 2346889999999999887885333331000110
Q ss_pred --cH---HHH-HHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCC
Q 014369 334 --QS---LPN-ILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRP 407 (426)
Q Consensus 334 --lA---~AN-aLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~ 407 (426)
|. +++ .-..-++|..++=-++.|+ ++-|.++++++..++.-|...-+++. =.++-.+.-|..
T Consensus 321 ~~~~~~~~~~f~~eL~~~Gy~~~~~~la~~--------ha~~~a~~~~a~~~~~~Gm~ay~~~Q----~~e~~~~~~g~~ 388 (428)
T PRK15063 321 KNLDDATIAKFQRELGAMGYKFQFITLAGF--------HSLNYSMFDLAHGYAREGMAAYVELQ----EAEFAAEERGYT 388 (428)
T ss_pred cccCHHHHHHHHHHHHHcCceEEEechHHH--------HHHHHHHHHHHHHHHHhccHHHHHHH----HHHHHHHhcCcc
Confidence 11 111 2333469999999999988 56889999999999876554222221 122334556777
Q ss_pred CCCCCcccchhhh
Q 014369 408 SGSKTAIALNRIA 420 (426)
Q Consensus 408 ~~~~~pivG~~vf 420 (426)
.-.++--+|.+-|
T Consensus 389 ~~~hq~~~G~~y~ 401 (428)
T PRK15063 389 AVKHQREVGTGYF 401 (428)
T ss_pred eeechhhccccHH
Confidence 7777777777655
No 356
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=90.51 E-value=11 Score=38.59 Aligned_cols=163 Identities=13% Similarity=0.096 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccC---HHHHHHHhHhcC--CCcEE-EEeCC-----hhhHHHHHH
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD---ARDVMEAVRDLE--GARLP-VLTPN-----LKGFEAAIA 212 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D---~~~v~~~i~~~~--~~~l~-~l~~~-----~~di~~a~~ 212 (426)
.++.+.-..+++.+.+.+.....+.+... .|-+.. ..++++.+++.. +..+. .+.-| .+-++...+
T Consensus 38 ~m~~~~~~~~i~~~~~~~~~~~~i~~~GG---EPll~~~~~~~~~~~~~~~~~~~~~~~~~~i~TNG~ll~~~~~~~l~~ 114 (370)
T PRK13758 38 IMRDEVLESMVKRVLNEAEGHCSFAFQGG---EPTLAGLEFFEELMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSE 114 (370)
T ss_pred CCCHHHHHHHHHHHHhccCCceEEEEECC---ccccCChHHHHHHHHHHHHhccCCCeEEEEEEecCEecCHHHHHHHHH
Confidence 46777777777766555444455555422 233321 235555555432 33331 23322 344566667
Q ss_pred cCCCEEEEeccCC-hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 014369 213 AGAKEVAIFASAS-EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291 (426)
Q Consensus 213 ~Gv~~V~i~~~~S-d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Ga 291 (426)
.++ .|.|.+-.. +.|........-...++++.+.++.+++.|+++.+.+. + ++...+.+.++++.+.+.|+
T Consensus 115 ~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~~~i~~~--v-----~~~n~~~l~~i~~~~~~~g~ 186 (370)
T PRK13758 115 NKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCV--V-----TSNTARHVNKIYKYFKEKDF 186 (370)
T ss_pred cCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHhCCCceEEEE--e-----ccccccCHHHHHHHHHHcCC
Confidence 775 677775443 33322211111245677788888888888887664333 2 23345567777778888999
Q ss_pred CEEEEc---CCCC--------CCCHHHHHHHHHHHHH
Q 014369 292 FEISLG---DTIG--------VGTPGTVVPMLEAVMA 317 (426)
Q Consensus 292 d~I~l~---DT~G--------~~~P~~v~~li~~l~~ 317 (426)
+.+.+. +..| .+.|.+..+++..+.+
T Consensus 187 ~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~l~~ 223 (370)
T PRK13758 187 KFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNLFD 223 (370)
T ss_pred CeEeeeeccCccccccCCCcCccCHHHHHHHHHHHHH
Confidence 877542 2222 3577777776666554
No 357
>PRK08508 biotin synthase; Provisional
Probab=90.49 E-value=1.2 Score=44.23 Aligned_cols=135 Identities=16% Similarity=0.051 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHH
Q 014369 235 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEA 314 (426)
Q Consensus 235 ~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~ 314 (426)
.+.++.++. ++++++.|..-.+-+...++ ....+.+++.++++.+.+.+.+ +.+.-+.|..+++.+.+|-++
T Consensus 40 ~s~eeI~~~----a~~a~~~g~~~~~lv~sg~~---~~~~~~e~~~ei~~~ik~~~p~-l~i~~s~G~~~~e~l~~Lk~a 111 (279)
T PRK08508 40 KDIEQIVQE----AKMAKANGALGFCLVTSGRG---LDDKKLEYVAEAAKAVKKEVPG-LHLIACNGTASVEQLKELKKA 111 (279)
T ss_pred CCHHHHHHH----HHHHHHCCCCEEEEEeccCC---CCcccHHHHHHHHHHHHhhCCC-cEEEecCCCCCHHHHHHHHHc
Confidence 466666654 44566667642211111111 1123568888888888776533 234446788887777666544
Q ss_pred HHHhcCC-c----eEE--EEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369 315 VMAVVPV-E----KLA--VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE 385 (426)
Q Consensus 315 l~~~~p~-~----~i~--~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~ 385 (426)
=...++. . .+- ++.-.++.--+.....|-++|...-.+-+.|+|| . .-...+.+..|+.++.+
T Consensus 112 Gld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGE------t--~ed~~~~l~~lr~L~~~ 181 (279)
T PRK08508 112 GIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGE------S--WEDRISFLKSLASLSPH 181 (279)
T ss_pred CCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCC------C--HHHHHHHHHHHHcCCCC
Confidence 1222221 0 010 0111223334445556788998877888899988 2 34455555556555543
No 358
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=90.43 E-value=20 Score=35.67 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC--CCEEEEc----CCCC-----CCC
Q 014369 236 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG--CFEISLG----DTIG-----VGT 304 (426)
Q Consensus 236 s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G--ad~I~l~----DT~G-----~~~ 304 (426)
..+..++++.. ..++.+.++.++|.. .+++.+.++++.+.+++ +|.|.|. -+.| ...
T Consensus 74 g~~~~~~~~~~---~~~~~~~pl~~qi~g---------~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~ 141 (300)
T TIGR01037 74 GVEAFLEELKP---VREEFPTPLIASVYG---------SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQD 141 (300)
T ss_pred CHHHHHHHHHH---HhccCCCcEEEEeec---------CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccC
Confidence 44555554443 334556666655531 35889999999998764 7876663 1111 247
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369 305 PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 352 (426)
Q Consensus 305 P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~ 352 (426)
|+.+.++++++++.++ .+|.+-.-.+.--...-+-.+.++|++.|.+
T Consensus 142 ~~~~~eiv~~vr~~~~-~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v 188 (300)
T TIGR01037 142 PELSADVVKAVKDKTD-VPVFAKLSPNVTDITEIAKAAEEAGADGLTL 188 (300)
T ss_pred HHHHHHHHHHHHHhcC-CCEEEECCCChhhHHHHHHHHHHcCCCEEEE
Confidence 8999999999998864 3566655433333445555677899998854
No 359
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=90.31 E-value=18 Score=34.97 Aligned_cols=196 Identities=16% Similarity=0.135 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhCCCCeEEEecC-CCCCccccccCHHHHHHHhHhcCCCcEEE--EeCChhhHHHHHHcCCCEEEEeccCC
Q 014369 149 VKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIFASAS 225 (426)
Q Consensus 149 ~ki~I~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~~di~~a~~~Gv~~V~i~~~~S 225 (426)
+-+++++.+.+.|++.|=+-=. ..... .+..++++.+.+..++++++ -.++.++++.++.+|++.+.+-..+
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~----~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~- 107 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAFGR----GSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAA- 107 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccCCC----CccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchH-
Confidence 5678999999999886554211 11111 11224444444323444443 4588999999999999988664321
Q ss_pred hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEe-eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCC--CC
Q 014369 226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC-VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI--GV 302 (426)
Q Consensus 226 d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~-~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~--G~ 302 (426)
-+..+.+.++++...+. +.+...+-. .+-. .....+...+.++++.+.++|++.|.+-|-. |.
T Consensus 108 ------------l~~p~l~~~i~~~~~~~-i~vsld~~~~~v~~-~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~ 173 (241)
T PRK14024 108 ------------LENPEWCARVIAEHGDR-VAVGLDVRGHTLAA-RGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGT 173 (241)
T ss_pred ------------hCCHHHHHHHHHHhhhh-EEEEEEEeccEecc-CCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCC
Confidence 01123344444443322 111111100 0000 0001123456778889999999988887663 44
Q ss_pred CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHH----HcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHH
Q 014369 303 GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL----QMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYM 378 (426)
Q Consensus 303 ~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl----~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~ 378 (426)
.... -.++++.+++..+. |+-.-+ |.....-+..+ ..||+ +.+.|-+- -.|..+++++...
T Consensus 174 ~~G~-d~~~i~~i~~~~~i-pviasG----Gi~s~~D~~~l~~~~~~Gvd---gV~igra~------~~g~~~~~~~~~~ 238 (241)
T PRK14024 174 LTGP-NLELLREVCARTDA-PVVASG----GVSSLDDLRALAELVPLGVE---GAIVGKAL------YAGAFTLPEALAV 238 (241)
T ss_pred ccCC-CHHHHHHHHhhCCC-CEEEeC----CCCCHHHHHHHhhhccCCcc---EEEEeHHH------HcCCCCHHHHHHH
Confidence 4443 35667777776543 455533 22223333332 23544 44555444 4567777776544
No 360
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=90.30 E-value=22 Score=35.80 Aligned_cols=204 Identities=17% Similarity=0.109 Sum_probs=118.0
Q ss_pred CHHHHHHHHHHHHhC----CCCeEEEecCC-----CCCcc--ccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcC
Q 014369 146 PTGVKVELIRRLVSS----GLPVVEATSFV-----SPKWV--PQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAG 214 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~----Gv~~IEvG~~~-----s~~~~--p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~G 214 (426)
+.++.+++|+.|.++ |+..|==|+|- +|... |.+.+.=++++.++.--++.+..=+-...+++.+.+.
T Consensus 28 s~e~~~~~A~~lk~~~~~~g~~~i~kgsfkKApRTSp~sFrG~G~eeGL~iL~~vk~~~glpvvTeV~~~~q~~~vae~- 106 (290)
T PLN03033 28 SEEHILRMAKHIKDISTKLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDLPIVTDVHESSQCEAVGKV- 106 (290)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEeeCCHHHHHHHHhh-
Confidence 678889999999885 99988887663 23222 2222222334444433344444334567888888887
Q ss_pred CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 014369 215 AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI 294 (426)
Q Consensus 215 v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I 294 (426)
+|.+.|... +. +-.++++.+-+.|..|- |-. .--.+|++....++.+...|-+.|
T Consensus 107 ~DilQIgAr-----~~------------rqtdLL~a~~~tgkpV~--lKk------Gq~~t~~e~~~aaeki~~~GN~~v 161 (290)
T PLN03033 107 ADIIQIPAF-----LC------------RQTDLLVAAAKTGKIIN--IKK------GQFCAPSVMRNSAEKVRLAGNPNV 161 (290)
T ss_pred CcEEeeCcH-----HH------------HHHHHHHHHHccCCeEE--eCC------CCCCCHHHHHHHHHHHHHcCCCcE
Confidence 699988642 11 22356666666777664 221 123578999999999999999988
Q ss_pred EEcC---CCCCCCH-HHHHHHHHHHHH-hcCCceEEE-Ee----------------CCCcCcHHHHHHHHHHcCCCEEee
Q 014369 295 SLGD---TIGVGTP-GTVVPMLEAVMA-VVPVEKLAV-HL----------------HDTYGQSLPNILISLQMGISTVDC 352 (426)
Q Consensus 295 ~l~D---T~G~~~P-~~v~~li~~l~~-~~p~~~i~~-H~----------------HNd~GlA~ANaLaAl~aGa~~VD~ 352 (426)
.|+. |.|+-.- .+++. +..+++ .+|.+ +.. |. =-+.-+-..-+.+|+.+|||.+=.
T Consensus 162 iLcERG~tFgy~~lv~D~r~-ip~mk~~~lPVI-~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfi 239 (290)
T PLN03033 162 MVCERGTMFGYNDLIVDPRN-LEWMREANCPVV-ADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFM 239 (290)
T ss_pred EEEeCCCCcCCCCcccchhh-hHHHHhcCCCEE-EeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 8886 3333211 12222 222332 23431 222 54 133445678899999999996644
Q ss_pred cccCCCCCC-CCCC-CCCcccHHHHHHHHH
Q 014369 353 SVAGLGGCP-YAKG-ASGNVATEDVVYMLS 380 (426)
Q Consensus 353 Sv~GlGecP-~a~g-raGNa~lEevv~~L~ 380 (426)
=+. -|| =|+- ++=..+++++-..|+
T Consensus 240 EvH---pdP~~AlsDg~q~l~~~~l~~ll~ 266 (290)
T PLN03033 240 EVH---DDPLSAPVDGPTQWPLRHLEELLE 266 (290)
T ss_pred Eec---CCccccCCCcccCcCHHHHHHHHH
Confidence 444 234 2221 233455555544443
No 361
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=90.30 E-value=2.4 Score=41.76 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=55.4
Q ss_pred CCCC-CCHHHHHHHHHHHHhCCCCEEEEcC-CC--C--CCCHH-H---HHHHHHHHHHhcCCceEEEEeCCCcCcHHHHH
Q 014369 270 VEGA-IPPSKVAYVAKELHDMGCFEISLGD-TI--G--VGTPG-T---VVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNI 339 (426)
Q Consensus 270 d~~r-~~~~~l~~~~~~l~~~Gad~I~l~D-T~--G--~~~P~-~---v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANa 339 (426)
|.++ .+++.+.+.++...+.||+.|-+.- +. | ...|+ + +..+++.+++.+. .+|.+|.++. .-+
T Consensus 15 dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~-~plsiDT~~~-----~vi 88 (257)
T TIGR01496 15 DGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPD-VPISVDTYRA-----EVA 88 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCC-CeEEEeCCCH-----HHH
Confidence 3444 5789999999999999999999941 11 1 11232 3 6677777776554 5799999985 455
Q ss_pred HHHHHcCCCEEeec
Q 014369 340 LISLQMGISTVDCS 353 (426)
Q Consensus 340 LaAl~aGa~~VD~S 353 (426)
.+|+++|+++|+..
T Consensus 89 ~~al~~G~~iINsi 102 (257)
T TIGR01496 89 RAALEAGADIINDV 102 (257)
T ss_pred HHHHHcCCCEEEEC
Confidence 67888899998654
No 362
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=90.29 E-value=4.8 Score=38.18 Aligned_cols=110 Identities=17% Similarity=0.105 Sum_probs=69.0
Q ss_pred hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369 205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (426)
Q Consensus 205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~ 284 (426)
+.++.+.++|++.|.+....+ .+.++.+++.++.+...+ .+. +.++
T Consensus 71 ~~~~~~~~~g~d~v~l~~~~~-------------------~~~~~~~~~~~i~~i~~v-----------~~~----~~~~ 116 (236)
T cd04730 71 ALLEVALEEGVPVVSFSFGPP-------------------AEVVERLKAAGIKVIPTV-----------TSV----EEAR 116 (236)
T ss_pred HHHHHHHhCCCCEEEEcCCCC-------------------HHHHHHHHHcCCEEEEeC-----------CCH----HHHH
Confidence 467888899999998854311 234555666677654211 122 3345
Q ss_pred HHHhCCCCEEEEcC--CCCCCCHH--HHHHHHHHHHHhcCCceEEEEeCCCcCcHH-HHHHHHHHcCCCEEeec
Q 014369 285 ELHDMGCFEISLGD--TIGVGTPG--TVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGISTVDCS 353 (426)
Q Consensus 285 ~l~~~Gad~I~l~D--T~G~~~P~--~v~~li~~l~~~~p~~~i~~H~HNd~GlA~-ANaLaAl~aGa~~VD~S 353 (426)
.+.+.|+|.|.+-. +.|...+. ...++++.+++.++ .++-+.+ |... .|+..++.+|++.|...
T Consensus 117 ~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~-~Pvi~~G----GI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 117 KAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVD-IPVIAAG----GIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred HHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhC-CCEEEEC----CCCCHHHHHHHHHcCCcEEEEc
Confidence 56678999887633 23443332 34567788877654 2455543 6655 78889999999988764
No 363
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=90.28 E-value=2.2 Score=42.50 Aligned_cols=81 Identities=10% Similarity=0.033 Sum_probs=65.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCC
Q 014369 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGI 347 (426)
Q Consensus 272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa 347 (426)
++.|.+.+.++++.+.+.|++.|.+.-|.|= ++.++-.++++.+.+... ..+|-+|.-.+..-++..+..|-++||
T Consensus 16 g~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Ga 95 (289)
T cd00951 16 GSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGA 95 (289)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCC
Confidence 6789999999999999999999999999884 566777788887777663 455666665566777888888999999
Q ss_pred CEEee
Q 014369 348 STVDC 352 (426)
Q Consensus 348 ~~VD~ 352 (426)
+.+=.
T Consensus 96 d~v~~ 100 (289)
T cd00951 96 DGILL 100 (289)
T ss_pred CEEEE
Confidence 98844
No 364
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=90.28 E-value=1.2 Score=44.79 Aligned_cols=122 Identities=16% Similarity=0.199 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEc-CCCCCCCHHHHHHHHHHHHHh
Q 014369 241 LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE-ISLG-DTIGVGTPGTVVPMLEAVMAV 318 (426)
Q Consensus 241 l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~-I~l~-DT~G~~~P~~v~~li~~l~~~ 318 (426)
|.+++++.+.|++.|+-|-+ |.+ .+.+.+..+++++.+.+... |.+. .+...+....+..+++.+.+.
T Consensus 2 lv~~~~ll~~A~~~~yAV~A-----fN~-----~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~ 71 (287)
T PF01116_consen 2 LVNMKELLKKAKEGGYAVPA-----FNV-----YNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEE 71 (287)
T ss_dssp BHHHHHHHHHHHHHT-BEEE-----EE------SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHCCCeEEE-----Eee-----CCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHH
Confidence 45678899999999988753 322 35688999999999998774 3333 344555456778888888888
Q ss_pred cCCceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCC
Q 014369 319 VPVEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG 383 (426)
Q Consensus 319 ~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG 383 (426)
.. +|+.+|. |.|........|+++|.+ .+|+|-..+-| -..-|-+++.+.+.+|
T Consensus 72 ~~-vPValHL--DH~~~~e~i~~ai~~GftSVM~DgS~l~~ee--------Ni~~T~~vv~~ah~~g 127 (287)
T PF01116_consen 72 AS-VPVALHL--DHGKDFEDIKRAIDAGFTSVMIDGSALPFEE--------NIAITREVVEYAHAYG 127 (287)
T ss_dssp ST-SEEEEEE--EEE-SHHHHHHHHHHTSSEEEEE-TTS-HHH--------HHHHHHHHHHHHHHTT
T ss_pred cC-CCEEeec--ccCCCHHHHHHHHHhCcccccccCCcCCHHH--------HHHHHHHHHHhhhhhC
Confidence 76 3676654 556669999999999999 67999777665 2245666777776543
No 365
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=90.26 E-value=3.2 Score=35.76 Aligned_cols=131 Identities=19% Similarity=0.192 Sum_probs=79.9
Q ss_pred CCCCHHHHHHHHHHH-HhCCCCeEEEecCCCCCccccc-cCHHHHHHHhHhc--CCCcEEEEeC----ChhhHHHHHHcC
Q 014369 143 NTVPTGVKVELIRRL-VSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDL--EGARLPVLTP----NLKGFEAAIAAG 214 (426)
Q Consensus 143 ~~f~~~~ki~I~~~L-~~~Gv~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~--~~~~l~~l~~----~~~di~~a~~~G 214 (426)
..++.++.++.++.+ .+.|+..|-++.. . |.+ .+.......+... .+.++...+. ..+.++...+.|
T Consensus 26 ~~~~~e~i~~~~~~~~~~~~~~~i~~~~g-e----p~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~ 100 (166)
T PF04055_consen 26 REMSPEEILEEIKELKQDKGVKEIFFGGG-E----PTLHPDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKLG 100 (166)
T ss_dssp EECHHHHHHHHHHHHHHHTTHEEEEEESS-T----GGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHhHhcCCcEEEEeec-C----CCcchhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhcC
Confidence 367899999999999 6999888888742 1 111 1233344444433 3455555542 256788889999
Q ss_pred CCEEEEeccCChHH-HhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369 215 AKEVAIFASASEAF-SKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (426)
Q Consensus 215 v~~V~i~~~~Sd~~-~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~ 285 (426)
.+.|.+.+...+.. ....++ .....+++.+.++.+++.|+.....++ ++.|.. +.+++.++++.
T Consensus 101 ~~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~~~~~i--~~~~~~---~~~e~~~~~~~ 165 (166)
T PF04055_consen 101 VDRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIPRVIIFI--VGLPGE---NDEEIEETIRF 165 (166)
T ss_dssp CSEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSETEEEEE--EEBTTT---SHHHHHHHHHH
T ss_pred ccEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCcEEEEE--EEeCCC---CHHHHHHHhCc
Confidence 99999987554443 333443 223456667888889999987322233 334533 35666666553
No 366
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=90.26 E-value=26 Score=37.80 Aligned_cols=159 Identities=14% Similarity=0.037 Sum_probs=95.6
Q ss_pred HHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369 208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (426)
Q Consensus 208 ~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l 286 (426)
+.+.+-|+..+-+.......+.....+.+.++.++.+.+.++.+++..- .+.+.+... .. -..+++.+.+.++.+
T Consensus 204 ~d~~~DgV~Y~ElR~~p~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~fi~~rlI~~---~~-R~~~~~~~~~~~~~a 279 (479)
T TIGR01431 204 EEFYADNVQYLELRSTLFILYELEGTSHDEEDSVRIYKEVTEKFMAEHPDFIGSKLIYS---PL-RNKDKEELDNYIKVA 279 (479)
T ss_pred HHHHHcCCEEEEEEecCchHhhcCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEE---cc-CCCCHHHHHHHHHHH
Confidence 4455678887777766545555555556888999999999888876542 133334322 12 224677777766666
Q ss_pred HhC---CCCEEEEcCCCCCC----CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH---HHHHHHHHHcCCCEEeecccC
Q 014369 287 HDM---GCFEISLGDTIGVG----TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS---LPNILISLQMGISTVDCSVAG 356 (426)
Q Consensus 287 ~~~---Gad~I~l~DT~G~~----~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA---~ANaLaAl~aGa~~VD~Sv~G 356 (426)
.++ -.+.|.=-|-+|.= .|..+.+.+..+++.. ++++.+|+=.+.+.+ -.|...|+..|+++|.=.+.
T Consensus 280 ~~~k~~~p~~vvGfDL~G~E~~g~pl~~f~~~~~~~~~~~-gl~~t~HAGE~~~~g~~~d~nl~dAIlLg~~RIGHG~~- 357 (479)
T TIGR01431 280 MELKEKYPDFVAGFDLVGQEDKGRSLLDFIDALLGPSDKE-KLPYFFHAGETNWQGTTVDENLIDALLLNTTRIGHGFA- 357 (479)
T ss_pred HHHHhhCCCeEEEEeccCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEecCCcCCCCCCchhHHHHHHHcCCccccCccc-
Confidence 554 13334434666632 2445555444444323 457999998776433 48999999999999832222
Q ss_pred CCCCCCCCCCCCcccHHHHHHHHHhCCC
Q 014369 357 LGGCPYAKGASGNVATEDVVYMLSGLGV 384 (426)
Q Consensus 357 lGecP~a~graGNa~lEevv~~L~~lG~ 384 (426)
.+--.+++..++..+|
T Consensus 358 ------------l~~~P~l~~~vke~~I 373 (479)
T TIGR01431 358 ------------LVKHPLVLQMLKERNI 373 (479)
T ss_pred ------------ccCCHHHHHHHHHhCC
Confidence 1222567777776554
No 367
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=90.20 E-value=2.1 Score=42.48 Aligned_cols=83 Identities=12% Similarity=0.076 Sum_probs=70.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG 346 (426)
Q Consensus 272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~aG 346 (426)
+..|.+-+.++++.+.+.|++.|.+.-|+| .+++++=.++++.+++..+ ..+|-+|. +++.--++.-+..|-++|
T Consensus 17 g~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G 96 (292)
T PRK03170 17 GSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAG 96 (292)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999998 6778888888888888765 34566655 678889999999999999
Q ss_pred CCEEeecc
Q 014369 347 ISTVDCSV 354 (426)
Q Consensus 347 a~~VD~Sv 354 (426)
++.|=..-
T Consensus 97 ~d~v~~~p 104 (292)
T PRK03170 97 ADGALVVT 104 (292)
T ss_pred CCEEEECC
Confidence 99886654
No 368
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=90.17 E-value=17 Score=38.20 Aligned_cols=144 Identities=14% Similarity=0.071 Sum_probs=84.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecC-CCCCccc--cccCHHHHHHHhHhcCCCcE---EEEeC---ChhhHHHHHHcC
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVP--QLADARDVMEAVRDLEGARL---PVLTP---NLKGFEAAIAAG 214 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~-~s~~~~p--~~~D~~~v~~~i~~~~~~~l---~~l~~---~~~di~~a~~~G 214 (426)
..+.+..++=++.|.+.|++.|.+... ......+ ......++++.+...++... ..+-| +.+-++...++|
T Consensus 163 ~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~~~i~~~r~~~~~p~~~~~ell~~~~~~~ 242 (430)
T TIGR01125 163 SRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKVGGIYWIRMHYLYPDELTDDVIDLMAEGP 242 (430)
T ss_pred ecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHhhCC
Confidence 457788888888888899988875421 1000000 01235667776665443322 22223 234566666764
Q ss_pred --CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369 215 --AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (426)
Q Consensus 215 --v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G--~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~ 289 (426)
...+++.+ +.|+.-++ .+|+. ...+++.++++.+++++ +.+.++++ +|.|.. +.+.+.+.++.+.+.
T Consensus 243 ~~~~~l~iglES~s~~vLk-~m~k~--~~~~~~~~~i~~l~~~~~~i~i~~~~I--~G~PgE---T~e~~~~t~~fl~~~ 314 (430)
T TIGR01125 243 KVLPYLDIPLQHASDRILK-LMRRP--GSGEQQLDFIERLREKCPDAVLRTTFI--VGFPGE---TEEDFQELLDFVEEG 314 (430)
T ss_pred cccCceEeCCCCCCHHHHh-hCCCC--CCHHHHHHHHHHHHHhCCCCeEeEEEE--EECCCC---CHHHHHHHHHHHHhc
Confidence 67787765 45554333 34442 12456677788888874 55555554 677765 467777777777888
Q ss_pred CCCEEE
Q 014369 290 GCFEIS 295 (426)
Q Consensus 290 Gad~I~ 295 (426)
+.+.+.
T Consensus 315 ~~~~~~ 320 (430)
T TIGR01125 315 QFDRLG 320 (430)
T ss_pred CCCEEe
Confidence 876554
No 369
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.15 E-value=9.9 Score=39.39 Aligned_cols=140 Identities=14% Similarity=0.050 Sum_probs=85.0
Q ss_pred HHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc-C--CcEEEEEEeeecCCC--CC
Q 014369 208 EAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVGCPV--EG 272 (426)
Q Consensus 208 ~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G--~~v~~~v~~~fg~pd--~~ 272 (426)
+.|.++|.|.|.|...- |+. ++...+|-+.++=...+.++++.+|+. | +.|.+-++..-+.+. .+
T Consensus 151 ~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~ 230 (361)
T cd04747 151 ADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARL 230 (361)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCC
Confidence 46677899988776432 222 234456778888888888888888885 4 455555552100111 11
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCCCC-CCH---HHHHHHHHHHHHhcCCceEEEEeCCCcC---------------
Q 014369 273 AIPPSKVAYVAKELHDMGCFEISLGDTIGV-GTP---GTVVPMLEAVMAVVPVEKLAVHLHDTYG--------------- 333 (426)
Q Consensus 273 r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~-~~P---~~v~~li~~l~~~~p~~~i~~H~HNd~G--------------- 333 (426)
-.+++...++++.+.++|+|.|.+.- |. ..| ..-..+.+.+++.++. ++.+.+--++.
T Consensus 231 g~~~~e~~~~~~~l~~~gvd~i~vs~--g~~~~~~~~~~~~~~~~~~k~~~~~-pv~~~G~i~~~~~~~~~~~~~~~~~~ 307 (361)
T cd04747 231 ADTPDELEALLAPLVDAGVDIFHCST--RRFWEPEFEGSELNLAGWTKKLTGL-PTITVGSVGLDGDFIGAFAGDEGASP 307 (361)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecC--CCccCCCcCccchhHHHHHHHHcCC-CEEEECCccccccccccccccccccc
Confidence 25788889999999999999887732 21 122 1123456667777654 45554432111
Q ss_pred cHHHHHHHHHHcC-CCEE
Q 014369 334 QSLPNILISLQMG-ISTV 350 (426)
Q Consensus 334 lA~ANaLaAl~aG-a~~V 350 (426)
.....+..+++.| ||.|
T Consensus 308 ~~~~~a~~~l~~g~~D~V 325 (361)
T cd04747 308 ASLDRLLERLERGEFDLV 325 (361)
T ss_pred CCHHHHHHHHHCCCCCee
Confidence 2446677888876 7765
No 370
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=90.14 E-value=13 Score=38.71 Aligned_cols=137 Identities=20% Similarity=0.138 Sum_probs=82.6
Q ss_pred HHHHHcCCCEEEEeccC---------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc---CCcEEEEEEeee---cC--
Q 014369 208 EAAIAAGAKEVAIFASA---------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVV---GC-- 268 (426)
Q Consensus 208 ~~a~~~Gv~~V~i~~~~---------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~---G~~v~~~v~~~f---g~-- 268 (426)
++|.++|.|.|.|...- |+. ++...+|-+.++=+..+.++++.+|+. ++.|.+-++..- +.
T Consensus 157 ~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~ 236 (382)
T cd02931 157 VIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQ 236 (382)
T ss_pred HHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccc
Confidence 56678999988876421 111 223345778887777788888888774 344554444210 00
Q ss_pred ---C----CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC-----------C-CHHHHHHHHHHHHHhcCCceEEEEeC
Q 014369 269 ---P----VEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV-----------G-TPGTVVPMLEAVMAVVPVEKLAVHLH 329 (426)
Q Consensus 269 ---p----d~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~-----------~-~P~~v~~li~~l~~~~p~~~i~~H~H 329 (426)
| ..+-.++++..++++.+.++|+|.|.+.- |. . .+.....+++.+++.+...-+.....
T Consensus 237 ~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~--g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i 314 (382)
T cd02931 237 GALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDA--GSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRM 314 (382)
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCC--CCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCC
Confidence 0 01124678999999999999999998841 21 1 11222456777888775422443333
Q ss_pred CCcCcHHHHHHHHHHcC-CCEE
Q 014369 330 DTYGQSLPNILISLQMG-ISTV 350 (426)
Q Consensus 330 Nd~GlA~ANaLaAl~aG-a~~V 350 (426)
++ ...+..+++.| +|.|
T Consensus 315 ~~----~~~~~~~l~~g~~D~V 332 (382)
T cd02931 315 ED----PELASEAINEGIADMI 332 (382)
T ss_pred CC----HHHHHHHHHcCCCCee
Confidence 33 45677788877 6655
No 371
>PRK06801 hypothetical protein; Provisional
Probab=90.14 E-value=2.8 Score=42.02 Aligned_cols=100 Identities=12% Similarity=0.107 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcCCC-CCCCHHHHHHHHHHHHHhcC
Q 014369 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTI-GVGTPGTVVPMLEAVMAVVP 320 (426)
Q Consensus 243 ~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~DT~-G~~~P~~v~~li~~l~~~~p 320 (426)
.++++.+.|++.++-|-+ |. -.+.+.+..+++++.+.+.. +|.+.... .+..+..+..++..+.++.+
T Consensus 5 ~~~~~l~~A~~~~yaV~A-----fn-----~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~ 74 (286)
T PRK06801 5 SLANGLAHARKHGYALGA-----FN-----VLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHD 74 (286)
T ss_pred cHHHHHHHHHHCCceEEE-----Ee-----eCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCC
Confidence 356888899999987753 32 14678999999999999877 44554433 23455778888888888776
Q ss_pred CceEEEEeCCCcCcHHHHHHHHHHcCCCEE--eeccc
Q 014369 321 VEKLAVHLHDTYGQSLPNILISLQMGISTV--DCSVA 355 (426)
Q Consensus 321 ~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V--D~Sv~ 355 (426)
. |+.+|. |.|.-+.....|+++|++.| |+|-.
T Consensus 75 v-pV~lHl--DH~~~~e~i~~Ai~~GftSVm~D~S~l 108 (286)
T PRK06801 75 I-PVVLNL--DHGLHFEAVVRALRLGFSSVMFDGSTL 108 (286)
T ss_pred C-CEEEEC--CCCCCHHHHHHHHHhCCcEEEEcCCCC
Confidence 4 566665 56777899999999999954 55544
No 372
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=90.01 E-value=18 Score=34.48 Aligned_cols=169 Identities=13% Similarity=0.090 Sum_probs=85.9
Q ss_pred HHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCC---------------hhhHHHHHHcCCCEE
Q 014369 154 IRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPN---------------LKGFEAAIAAGAKEV 218 (426)
Q Consensus 154 ~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~---------------~~di~~a~~~Gv~~V 218 (426)
+..-.+.|.++||+=.-...... +-...+++.+++..++.+.+|.|. .+|++.+.+.|++.|
T Consensus 13 a~~A~~~GAdRiELc~~l~~GGl---TPS~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~ 89 (201)
T PF03932_consen 13 ALAAEAGGADRIELCSNLEVGGL---TPSLGLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGF 89 (201)
T ss_dssp HHHHHHTT-SEEEEEBTGGGT-B------HHHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEE
T ss_pred HHHHHHcCCCEEEECCCccCCCc---CcCHHHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCee
Confidence 34447899999999532111111 112345555655567778888752 146788889999988
Q ss_pred EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 014369 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD 298 (426)
Q Consensus 219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~D 298 (426)
.+-+-..+- +.+ .+.++++++.|+ |+++. +=.+| |.. .+ ..+..+.+.++|+++|-=.
T Consensus 90 VfG~L~~dg--------~iD--~~~~~~Li~~a~--~~~~t--FHRAf---D~~-~d---~~~al~~L~~lG~~rVLTS- 147 (201)
T PF03932_consen 90 VFGALTEDG--------EID--EEALEELIEAAG--GMPVT--FHRAF---DEV-PD---PEEALEQLIELGFDRVLTS- 147 (201)
T ss_dssp EE--BETTS--------SB---HHHHHHHHHHHT--TSEEE--E-GGG---GGS-ST---HHHHHHHHHHHT-SEEEES-
T ss_pred EEEeECCCC--------CcC--HHHHHHHHHhcC--CCeEE--EeCcH---HHh-CC---HHHHHHHHHhcCCCEEECC-
Confidence 877533331 111 345667777765 66665 33444 332 23 3345677888899988633
Q ss_pred CCCCCCH-HHHHHHHHHHHHhc-CCceEEEEeCCCcCcHHHHHHHHHH-cCCCEEeec
Q 014369 299 TIGVGTP-GTVVPMLEAVMAVV-PVEKLAVHLHDTYGQSLPNILISLQ-MGISTVDCS 353 (426)
Q Consensus 299 T~G~~~P-~~v~~li~~l~~~~-p~~~i~~H~HNd~GlA~ANaLaAl~-aGa~~VD~S 353 (426)
|...+ .+-.+.++.+.+.. +.+.|-.=+ |.-..|.-.-++ .|++.||+|
T Consensus 148 --Gg~~~a~~g~~~L~~lv~~a~~~i~Im~Gg----Gv~~~nv~~l~~~tg~~~~H~s 199 (201)
T PF03932_consen 148 --GGAPTALEGIENLKELVEQAKGRIEIMPGG----GVRAENVPELVEETGVREIHGS 199 (201)
T ss_dssp --TTSSSTTTCHHHHHHHHHHHTTSSEEEEES----S--TTTHHHHHHHHT-SEEEET
T ss_pred --CCCCCHHHHHHHHHHHHHHcCCCcEEEecC----CCCHHHHHHHHHhhCCeEEeec
Confidence 33322 12223333343333 222233322 444556555555 899999986
No 373
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=89.95 E-value=17 Score=38.42 Aligned_cols=145 Identities=12% Similarity=0.143 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecC--CC---CCccccccCHHHHHHHhHhcCCCc---EEEEeCC---hhhHHHHHH
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSF--VS---PKWVPQLADARDVMEAVRDLEGAR---LPVLTPN---LKGFEAAIA 212 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~--~s---~~~~p~~~D~~~v~~~i~~~~~~~---l~~l~~~---~~di~~a~~ 212 (426)
..+.+..++-++.|.+.|++.|-+... .. .+..+...+..++++.+...++.. +..+-|. .+-++...+
T Consensus 173 sr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~l~~ 252 (438)
T TIGR01574 173 SRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELSTIDGIERIRFTSSHPLDFDDDLIEVFAN 252 (438)
T ss_pred ccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHHhcCCceEEEEecCCcccCCHHHHHHHHh
Confidence 578898898899999999987766421 11 000001113455666665444432 2222232 345666667
Q ss_pred cC--CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369 213 AG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH 287 (426)
Q Consensus 213 ~G--v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~ 287 (426)
+| ...+++.+ +.|+.-++. +|+.. ..+.+.++++.+++. |+.+.++++ +|.|.. +++.+.+.++.+.
T Consensus 253 ~g~~~~~l~iglQSgsd~vLk~-m~R~~--t~~~~~~~v~~ir~~~~~i~i~~d~I--vG~PgE---t~ed~~~tl~~i~ 324 (438)
T TIGR01574 253 NPKLCKSMHLPVQSGSSEILKL-MKRGY--TREWYLNLVRKLRAACPNVSISTDII--VGFPGE---TEEDFEETLDLLR 324 (438)
T ss_pred CCCccCceeeCCCcCCHHHHHh-cCCCC--CHHHHHHHHHHHHHhCCCCeEeeCEE--EeCCCC---CHHHHHHHHHHHH
Confidence 77 78888886 456655543 54421 223445666667766 666666666 566765 4677777788888
Q ss_pred hCCCCEEEE
Q 014369 288 DMGCFEISL 296 (426)
Q Consensus 288 ~~Gad~I~l 296 (426)
+.+.+.+.+
T Consensus 325 ~~~~~~~~~ 333 (438)
T TIGR01574 325 EVEFDSAFS 333 (438)
T ss_pred hcCCCeeee
Confidence 888775553
No 374
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=89.91 E-value=27 Score=36.40 Aligned_cols=219 Identities=17% Similarity=0.167 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCH---HHHHHHhHh-c--CCCcEEEEeCChhhHHHHHHcCCCEEE
Q 014369 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA---RDVMEAVRD-L--EGARLPVLTPNLKGFEAAIAAGAKEVA 219 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~---~~v~~~i~~-~--~~~~l~~l~~~~~di~~a~~~Gv~~V~ 219 (426)
+...-.+.++.|.++|++.||+...- ..|--.+. +...+.+++ + .++++.+++.|...-.. ...| .
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~d---l~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~-~~~g----~ 101 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDD---LIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPV-FKDG----G 101 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccc---cCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCcc-ccCC----C
Confidence 44456788999999999999986210 11110111 111222321 1 35555555554210000 0001 1
Q ss_pred EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCH--------HHHHHHHHHHHhCCC
Q 014369 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP--------SKVAYVAKELHDMGC 291 (426)
Q Consensus 220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~--------~~l~~~~~~l~~~Ga 291 (426)
+ .+.++. -++.+++.+++.+++|+++|.+..+......+.+.....+. +.+.++++.+.+.|.
T Consensus 102 l-as~d~~--------vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~ 172 (382)
T TIGR02631 102 F-TSNDRS--------VRRYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGY 172 (382)
T ss_pred C-CCCCHH--------HHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 1 111111 13578899999999999999985422211111111111111 233334444455542
Q ss_pred C-EEEEcCCC-----C--CCCHHHHHHHHHHHHHhcCC---ceEEE-EeCCCcCcHHHHHHHHHHcCCCEEeecccCC-C
Q 014369 292 F-EISLGDTI-----G--VGTPGTVVPMLEAVMAVVPV---EKLAV-HLHDTYGQSLPNILISLQMGISTVDCSVAGL-G 358 (426)
Q Consensus 292 d-~I~l~DT~-----G--~~~P~~v~~li~~l~~~~p~---~~i~~-H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~Gl-G 358 (426)
. .|.|-=.- + +-++.++..+++.+-. |. +.+.+ |. +--|.-++-++.-...+-+.++.=++.. |
T Consensus 173 GV~laLEp~p~~~~~~~ll~T~~~al~li~~v~~--pn~vgl~lDvgH~-~~~g~n~~~~i~~~l~~~kl~HvhlnD~~g 249 (382)
T TIGR02631 173 GLRFALEPKPNEPRGDILLPTVGHALAFIETLER--PELFGLNPETGHE-QMAGLNFTHGIAQALWAGKLFHIDLNGQRG 249 (382)
T ss_pred CcEEEEccCCCCCCcceecCCHHHHHHHHHHcCC--ccceeEEEechhH-hhcCCCHHHHHHHHHhCCCEEEEecCCCCC
Confidence 2 35552221 1 3456677777766532 32 12333 33 3345555555552222445555555542 2
Q ss_pred ---CCCCCCCCCCcccHH-HHHHHHHhCCCC
Q 014369 359 ---GCPYAKGASGNVATE-DVVYMLSGLGVE 385 (426)
Q Consensus 359 ---ecP~a~graGNa~lE-evv~~L~~lG~~ 385 (426)
+.-+.+| .|+.... +++..|+..|++
T Consensus 250 ~~~D~hL~~G-~G~l~~~~~~l~~L~~~GY~ 279 (382)
T TIGR02631 250 IKFDQDLRFG-HGDLKAAFFLVDLLESGGYQ 279 (382)
T ss_pred CCccCCcCCC-CCCHHHHHHHHHHHHHCCCC
Confidence 1223345 8999988 599999987765
No 375
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=89.90 E-value=12 Score=39.28 Aligned_cols=108 Identities=8% Similarity=0.072 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHH-hc-CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc----CC-----CC---C
Q 014369 237 IEDSLVRYRAVAHAAK-VL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG----DT-----IG---V 302 (426)
Q Consensus 237 ~~e~l~~~~~~v~~Ak-~~-G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~----DT-----~G---~ 302 (426)
.+..++.+ +.+| +. ...+.+.|+ +..+++.+.++++.+.++|+|.|.|- .+ .| .
T Consensus 97 ~~~~l~~i----~~~k~~~~~~pvIaSi~--------~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~g 164 (385)
T PLN02495 97 FETMLAEF----KQLKEEYPDRILIASIM--------EEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVG 164 (385)
T ss_pred HHHHHHHH----HHHHhhCCCCcEEEEcc--------CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhc
Confidence 44455443 3343 33 346665553 22467999999999999999966552 22 11 1
Q ss_pred CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE---eecccCC
Q 014369 303 GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV---DCSVAGL 357 (426)
Q Consensus 303 ~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V---D~Sv~Gl 357 (426)
-.|+.+.++++.+++... +||.+-.=-+..-=..-+.+|.++||+.| ++...++
T Consensus 165 q~~e~~~~i~~~Vk~~~~-iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~ 221 (385)
T PLN02495 165 QDCDLLEEVCGWINAKAT-VPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVM 221 (385)
T ss_pred cCHHHHHHHHHHHHHhhc-CceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCccc
Confidence 479999999999988653 34555544444332344455788999965 4444344
No 376
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=89.90 E-value=8.4 Score=38.81 Aligned_cols=75 Identities=12% Similarity=0.042 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC--CCCE-EE-EcCCCCCCCHHHHHHHHHHHHH
Q 014369 242 VRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM--GCFE-IS-LGDTIGVGTPGTVVPMLEAVMA 317 (426)
Q Consensus 242 ~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~--Gad~-I~-l~DT~G~~~P~~v~~li~~l~~ 317 (426)
+...+.++.|++.|..... +-.|.-.+.+.+.+.+..+.+.++ +... || ++...|.-.|.+ +++.|.
T Consensus 90 ~~ai~~a~~A~~~Gad~vl-----v~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~---~l~~L~- 160 (309)
T cd00952 90 RDTIARTRALLDLGADGTM-----LGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRA---AWAELA- 160 (309)
T ss_pred HHHHHHHHHHHHhCCCEEE-----ECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHH---HHHHHh-
Confidence 4455677788888987431 224544455678888888777664 2443 33 677777655533 334443
Q ss_pred hcCCceEEE
Q 014369 318 VVPVEKLAV 326 (426)
Q Consensus 318 ~~p~~~i~~ 326 (426)
..|.+ +++
T Consensus 161 ~~pni-vgi 168 (309)
T cd00952 161 QIPQV-VAA 168 (309)
T ss_pred cCCCE-EEE
Confidence 35653 444
No 377
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=89.86 E-value=2.4 Score=44.10 Aligned_cols=89 Identities=12% Similarity=0.124 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCC-------CCCCHHHHHHHHHH
Q 014369 242 VRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI-------GVGTPGTVVPMLEA 314 (426)
Q Consensus 242 ~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~-------G~~~P~~v~~li~~ 314 (426)
+.+.++++.+|+.+..+- + |.++....++++.+.++|++.|.+-.|+ |...|..+.++++.
T Consensus 119 ~l~~~ii~~vr~a~Vtvk--i----------Rl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~ 186 (369)
T TIGR01304 119 ELLGERIAEVRDSGVITA--V----------RVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE 186 (369)
T ss_pred HHHHHHHHHHHhcceEEE--E----------ecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH
Confidence 445667777777763222 1 2345677889999999999999987653 55678876666654
Q ss_pred HHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369 315 VMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 315 l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD 351 (426)
+ +. ++- + .+ -.....++.++++||+.|.
T Consensus 187 ~----~I-PVI-~--G~-V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 187 L----DV-PVI-A--GG-VNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred C----CC-CEE-E--eC-CCCHHHHHHHHHcCCCEEE
Confidence 3 32 343 2 22 3445667888999999988
No 378
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=89.82 E-value=26 Score=36.03 Aligned_cols=231 Identities=21% Similarity=0.250 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEE-EeCChhhHHHHHHcCCCEEEEeccC
Q 014369 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV-LTPNLKGFEAAIAAGAKEVAIFASA 224 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~~ 224 (426)
+.+..++-+..|.++|.+.+-+..+ .+.+++++ ..+++..++.+.+ +-.+.+-.-.+.++|++.+||--.
T Consensus 34 Dv~aTv~QI~~L~~aG~dIVRvtv~-------~~e~A~A~-~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~~k~RINPG- 104 (361)
T COG0821 34 DVEATVAQIKALERAGCDIVRVTVP-------DMEAAEAL-KEIKQRLNVPLVADIHFDYRLALEAAECGVDKVRINPG- 104 (361)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEecC-------CHHHHHHH-HHHHHhCCCCEEEEeeccHHHHHHhhhcCcceEEECCc-
Confidence 3455577788999999999999853 34444443 3444323444443 223433334456789999999522
Q ss_pred ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC------CCCCHHHHH----HHHHHHHhCCCCEE
Q 014369 225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------GAIPPSKVA----YVAKELHDMGCFEI 294 (426)
Q Consensus 225 Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~------~r~~~~~l~----~~~~~l~~~Gad~I 294 (426)
|++. -+++.++|+.||++|+.++.-+- +|+-+. +...+|-+. +-++.+.+.|-+.|
T Consensus 105 -------Nig~-----~~~v~~vVe~Ak~~g~piRIGVN--~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i 170 (361)
T COG0821 105 -------NIGF-----KDRVREVVEAAKDKGIPIRIGVN--AGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDI 170 (361)
T ss_pred -------ccCc-----HHHHHHHHHHHHHcCCCEEEecc--cCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcE
Confidence 3332 23788999999999999994332 333221 011333332 24566777887754
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEeCCCcCcHHHH------HHHH-HHcCC-CEEeecccCCCCCCCCC
Q 014369 295 SLGDTIGVGTPGTVVPMLEAVMAVV--PVEKLAVHLHDTYGQSLPN------ILIS-LQMGI-STVDCSVAGLGGCPYAK 364 (426)
Q Consensus 295 ~l~DT~G~~~P~~v~~li~~l~~~~--p~~~i~~H~HNd~GlA~AN------aLaA-l~aGa-~~VD~Sv~GlGecP~a~ 364 (426)
.+. +-...|..+-+-.+.|.+.. |- +|++- --|++..- ++.+ +..|+ |.|-+|+.+
T Consensus 171 ~iS--~K~Sdv~~~v~aYr~lA~~~dyPL-HLGvT---EAG~~~~G~VkSa~alg~LL~eGIGDTIRVSLt~-------- 236 (361)
T COG0821 171 KVS--VKASDVQLMVAAYRLLAKRCDYPL-HLGVT---EAGMGFKGIVKSAAALGALLSEGIGDTIRVSLTA-------- 236 (361)
T ss_pred EEE--EEcCCHHHHHHHHHHHHHhcCCCc-cccee---cccCcccceehHHHHHHHHHHhcCCceEEEecCC--------
Confidence 442 22334444444444444433 31 23331 13444322 2222 35564 467777763
Q ss_pred CCCCcccHHHHHHH---HHhCCCCC-C-----------cChhhHHHHHHHHHHHhCCCCCCCCcccchh
Q 014369 365 GASGNVATEDVVYM---LSGLGVET-N-----------VDLRKLMLAGDFINKHLGRPSGSKTAIALNR 418 (426)
Q Consensus 365 graGNa~lEevv~~---L~~lG~~~-~-----------iDl~~L~~la~~v~~~~g~~~~~~~pivG~~ 418 (426)
-|+||+... |+.+|+.. + ...+-+..+.+..++..+.+.|=+.++.|.-
T Consensus 237 -----~P~~EV~V~~eILqslglR~~~v~~iaCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCV 300 (361)
T COG0821 237 -----DPVEEVKVAQEILQSLGLRSRGVEVIACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCV 300 (361)
T ss_pred -----CchhhhHHHHHHHHHhCccccCceEEECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeE
Confidence 236776654 44566541 2 2334444455555666788888888877753
No 379
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=89.76 E-value=3.3 Score=43.98 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 014369 278 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA 355 (426)
Q Consensus 278 ~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~ 355 (426)
+..+-++.+.++|++.|.+--+-| .-..+.+.|+.+++.+|+.+|.+ -..+-...+..++++||+.|.++++
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g--~~~~~~~~i~~i~~~~~~~~vi~----G~v~t~~~a~~l~~aGad~i~vg~g 295 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHG--HSIYVIDSIKEIKKTYPDLDIIA----GNVATAEQAKALIDAGADGLRVGIG 295 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCC--cHhHHHHHHHHHHHhCCCCCEEE----EeCCCHHHHHHHHHhCCCEEEECCC
Confidence 344556688899999988844444 33578899999999998767666 3345557788899999999999764
No 380
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.75 E-value=7.6 Score=41.77 Aligned_cols=218 Identities=17% Similarity=0.173 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEE-EeCChhhHHHHHHcCCCEEEEeccCC
Q 014369 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPV-LTPNLKGFEAAIAAGAKEVAIFASAS 225 (426)
Q Consensus 148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~~S 225 (426)
++..+.++.|.+.|++.|-+-.-... .....+.++.++ ..|++.+.+ =+-+.++.+.++++|+|.|.+.+..-
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~-----~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~g 300 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHGH-----QEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPG 300 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCCc-----cHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCC
Confidence 44568999999999998766321100 011234444454 345554444 23567888999999999999776541
Q ss_pred hHHH-hhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 014369 226 EAFS-KSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT 304 (426)
Q Consensus 226 d~~~-~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~ 304 (426)
-+-- +...+.+. ..+..+.++.+.|++.|.+|.+ +.+-..+..+ ++.+ .+||+.+.+.-..-
T Consensus 301 sictt~~~~~~~~-p~~~av~~~~~~~~~~~~~via---------~ggi~~~~~~---~~al-~~ga~~v~~g~~~a--- 363 (479)
T PRK07807 301 AMCTTRMMTGVGR-PQFSAVLECAAAARELGAHVWA---------DGGVRHPRDV---ALAL-AAGASNVMIGSWFA--- 363 (479)
T ss_pred cccccccccCCch-hHHHHHHHHHHHHHhcCCcEEe---------cCCCCCHHHH---HHHH-HcCCCeeeccHhhc---
Confidence 1100 11122233 3567778888889998987752 4454555553 3333 48999887653321
Q ss_pred HHHHHHHHHHHHHhcCCceE----EEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC--------cccH
Q 014369 305 PGTVVPMLEAVMAVVPVEKL----AVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASG--------NVAT 372 (426)
Q Consensus 305 P~~v~~li~~l~~~~p~~~i----~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG--------Na~l 372 (426)
. ..+.|...+ +-..-.-+|||..-++..-..+-+++.....+. +|-|-.| -.++
T Consensus 364 ---------g-~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~~~~~~~~----~~eGv~~~~~~~~~~~g~~ 429 (479)
T PRK07807 364 ---------G-TYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAFDRARKAL----FEEGISTSRMYLDPGRPGV 429 (479)
T ss_pred ---------c-CccCCCceEeccCCeEEEEeeccccHHHHhcccCccchhhhcccCC----CCCCccceeeeccCCCCCH
Confidence 1 233454222 223334689997665542111222332211110 1111111 2345
Q ss_pred HHHHHHHH----h-CCCCCCcChhhHHHHHHHHH
Q 014369 373 EDVVYMLS----G-LGVETNVDLRKLMLAGDFIN 401 (426)
Q Consensus 373 Eevv~~L~----~-lG~~~~iDl~~L~~la~~v~ 401 (426)
.+++..|. . +++--.-+++.|.+-++++.
T Consensus 430 ~~~~~~l~~glr~~~~y~g~~~i~~~~~~~~~~~ 463 (479)
T PRK07807 430 EDLLDHITSGVRSSCTYAGARTLAEFHERAVVGV 463 (479)
T ss_pred HHHHHHHHHHHHHHHhhcCcCcHHHHHhCCEEEE
Confidence 55555554 2 45544567777776665543
No 381
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.67 E-value=7 Score=41.14 Aligned_cols=213 Identities=13% Similarity=0.133 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHhCCCCeEEE--ecCCCCCccccccCHHHHHHHhH-hcCCCcEEE-EeCChhhHHHHHHcCCCEEEEecc
Q 014369 148 GVKVELIRRLVSSGLPVVEA--TSFVSPKWVPQLADARDVMEAVR-DLEGARLPV-LTPNLKGFEAAIAAGAKEVAIFAS 223 (426)
Q Consensus 148 ~~ki~I~~~L~~~Gv~~IEv--G~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~ 223 (426)
.+-.+.++.|.++|++.|=+ +...+ ....+.++.++ ..|+..+.+ -+.+.++.+.+.++|+|.|.+.+.
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g~~-------~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g 224 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHGHS-------TRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIG 224 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCC-------hhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCC
Confidence 44678999999999998875 33221 12334455555 356666533 457889999999999999987542
Q ss_pred CChHHH-hhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 014369 224 ASEAFS-KSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV 302 (426)
Q Consensus 224 ~Sd~~~-~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~ 302 (426)
.--++. +...+... ..+..+..+.+.+++.+++|.+ +.+-.++.++.+ +..+||+.+-+.--.-
T Consensus 225 ~Gs~c~tr~~~g~g~-p~ltai~~v~~~~~~~~vpVIA---------dGGI~~~~Di~K----ALalGA~aVmvGs~~a- 289 (404)
T PRK06843 225 PGSICTTRIVAGVGV-PQITAICDVYEVCKNTNICIIA---------DGGIRFSGDVVK----AIAAGADSVMIGNLFA- 289 (404)
T ss_pred CCcCCcceeecCCCC-ChHHHHHHHHHHHhhcCCeEEE---------eCCCCCHHHHHH----HHHcCCCEEEEcceee-
Confidence 211110 11112111 1233444555566666766541 344455665443 3359999887653321
Q ss_pred CCHHHHHHHHHHHHHhcCCceE---EEEeCCCcCcHHHHHHHHHHcC--CCEEeecccCCCCCCCCCCCCCcc----cHH
Q 014369 303 GTPGTVVPMLEAVMAVVPVEKL---AVHLHDTYGQSLPNILISLQMG--ISTVDCSVAGLGGCPYAKGASGNV----ATE 373 (426)
Q Consensus 303 ~~P~~v~~li~~l~~~~p~~~i---~~H~HNd~GlA~ANaLaAl~aG--a~~VD~Sv~GlGecP~a~graGNa----~lE 373 (426)
. -++.|...+ +-+.-.-+|||..- |++.| -+++......- .=-.+-|-.|.+ ++.
T Consensus 290 -----------g-t~Espg~~~~~~g~~~K~yrGmgS~~---Am~~~~~~ry~~~~~~~~-~~~v~eGveg~v~~~G~v~ 353 (404)
T PRK06843 290 -----------G-TKESPSEEIIYNGKKFKSYVGMGSIS---AMKRGSKSRYFQLENNEP-KKLVPEGIEGMVPYSGKLK 353 (404)
T ss_pred -----------e-eecCCCcEEEECCEEEEEEeccchHH---HHhccccccccccccccc-cccCCCccEEEecCCCCHH
Confidence 1 123454222 12334457998654 44333 33443211000 000001112222 466
Q ss_pred HHHHHHHh-----CCCCCCcChhhHHHHHH
Q 014369 374 DVVYMLSG-----LGVETNVDLRKLMLAGD 398 (426)
Q Consensus 374 evv~~L~~-----lG~~~~iDl~~L~~la~ 398 (426)
+++..|.. +++--.-++..|.+=++
T Consensus 354 ~~~~~l~gglrs~m~y~Ga~~i~el~~~a~ 383 (404)
T PRK06843 354 DILTQLKGGLMSGMGYLGAATISDLKINSK 383 (404)
T ss_pred HHHHHHHHHHHHHhhccCCCcHHHHHhcCe
Confidence 76666642 56655567777776443
No 382
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=89.63 E-value=1.3 Score=43.22 Aligned_cols=117 Identities=21% Similarity=0.266 Sum_probs=75.3
Q ss_pred HHHHHHhHhc--CCCcEEEEe-CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEE
Q 014369 183 RDVMEAVRDL--EGARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR 259 (426)
Q Consensus 183 ~~v~~~i~~~--~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~ 259 (426)
+.+...++.+ .+++++.+. |+.+.++.|.+.|++.|-++... +... ++...++.++++..++++|+++|+.|.
T Consensus 113 ~~l~~~i~~L~~~gIrVSLFidP~~~qi~~A~~~GAd~VELhTG~---yA~a-~~~~~~~el~~~~~aa~~a~~lGL~Vn 188 (239)
T PRK05265 113 DKLKPAIARLKDAGIRVSLFIDPDPEQIEAAAEVGADRIELHTGP---YADA-KTEAEAAELERIAKAAKLAASLGLGVN 188 (239)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechh---hhcC-CCcchHHHHHHHHHHHHHHHHcCCEEe
Confidence 3444444433 467777777 78899999999999999998642 2221 122335569999999999999999886
Q ss_pred EEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-----cCCCCCCCHHHHHHHHHHHH
Q 014369 260 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL-----GDTIGVGTPGTVVPMLEAVM 316 (426)
Q Consensus 260 ~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l-----~DT~G~~~P~~v~~li~~l~ 316 (426)
+ +.-.+.+.+..+++ --+..+++| ++.+=++.+..|+++.+.+.
T Consensus 189 A----------GHgLny~Nv~~i~~---ip~i~EvnIGHsiia~Al~~Gl~~aV~~m~~~i~ 237 (239)
T PRK05265 189 A----------GHGLNYHNVKPIAA---IPGIEELNIGHAIIARALFVGLEEAVREMKRLMD 237 (239)
T ss_pred c----------CCCCCHHhHHHHhh---CCCCeEEccCHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 2 12345566555421 124566665 45555556666666665554
No 383
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=89.50 E-value=2.7 Score=42.21 Aligned_cols=82 Identities=11% Similarity=0.067 Sum_probs=66.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcC
Q 014369 271 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMG 346 (426)
Q Consensus 271 ~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aG 346 (426)
.++.|.+.+.++++.+.+.|++.|.+.-|.| .+++++-.++++.+.+... ..++-+|.-.+..-++..+..|-++|
T Consensus 22 dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~G 101 (303)
T PRK03620 22 DGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAG 101 (303)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhC
Confidence 3678999999999999999999999999988 5678888888888887764 34566666445666777788888999
Q ss_pred CCEEee
Q 014369 347 ISTVDC 352 (426)
Q Consensus 347 a~~VD~ 352 (426)
|+.|=.
T Consensus 102 adav~~ 107 (303)
T PRK03620 102 ADGILL 107 (303)
T ss_pred CCEEEE
Confidence 998844
No 384
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=89.45 E-value=6.5 Score=39.31 Aligned_cols=100 Identities=15% Similarity=0.105 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCC--CCCC-HHHHHHHHHHHHHhcC
Q 014369 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI--GVGT-PGTVVPMLEAVMAVVP 320 (426)
Q Consensus 244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~--G~~~-P~~v~~li~~l~~~~p 320 (426)
++++.+.|++.++-|-+ |.+ .+.+.+..+++++.+.+...|--.--. .+.. ...+..++..+.+.++
T Consensus 4 ~~~~l~~A~~~~yav~A-----fn~-----~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 73 (282)
T TIGR01859 4 GKEILQKAKKEGYAVGA-----FNF-----NNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMS 73 (282)
T ss_pred HHHHHHHHHHCCceEEE-----EEE-----CCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCC
Confidence 46778889999987652 322 367889999999999998755543222 2222 4567788888888776
Q ss_pred CceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeeccc
Q 014369 321 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVA 355 (426)
Q Consensus 321 ~~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~ 355 (426)
.+|+.+|. |.|.-+.....|+++|++ ++|.+-.
T Consensus 74 ~vpv~lhl--DH~~~~e~i~~ai~~Gf~sVmid~s~l 108 (282)
T TIGR01859 74 IVPVALHL--DHGSSYESCIKAIKAGFSSVMIDGSHL 108 (282)
T ss_pred CCeEEEEC--CCCCCHHHHHHHHHcCCCEEEECCCCC
Confidence 24788884 545567888999999987 4465544
No 385
>PRK05985 cytosine deaminase; Provisional
Probab=89.41 E-value=28 Score=35.79 Aligned_cols=199 Identities=16% Similarity=0.148 Sum_probs=111.3
Q ss_pred HHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcC---CCcEEEEeC-----C---hhhHHHHHHcCCCEEEE
Q 014369 152 ELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE---GARLPVLTP-----N---LKGFEAAIAAGAKEVAI 220 (426)
Q Consensus 152 ~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~---~~~l~~l~~-----~---~~di~~a~~~Gv~~V~i 220 (426)
.-++.+.+.|+..+--=+.+.|. +.+...+++++..+... ...+..+.+ . .+.++.+++.|.+.+..
T Consensus 102 ~~~~~~l~~G~t~vr~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~ll~~~l~~g~~~~gg 179 (391)
T PRK05985 102 ALARAAAAAGTTAMRSHVDVDPD--AGLRHLEAVLAARETLRGLIDIQIVAFPQSGVLSRPGTAELLDAALRAGADVVGG 179 (391)
T ss_pred HHHHHHHhcCcceEEeeEccCCC--cccchHHHHHHHHHHhhCcccEEEEeccCccccCCcCHHHHHHHHHHcCCCEEeC
Confidence 34666677899876221111111 11223445555544332 233333432 1 34577788888764433
Q ss_pred eccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC---EEEEc
Q 014369 221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF---EISLG 297 (426)
Q Consensus 221 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad---~I~l~ 297 (426)
+.+.+ .....+ +.+.++++.|+++|+.+.+.+-.. .......+.++++.+.+.|.. .+.-+
T Consensus 180 ~~p~~-------~~~~~~---~~l~~~~~~A~~~g~~i~~Hv~e~------~d~~~~~~~~~~e~~~~~g~~~~~~i~H~ 243 (391)
T PRK05985 180 LDPAG-------IDGDPE---GQLDIVFGLAERHGVGIDIHLHEP------GELGAFQLERIAARTRALGMQGRVAVSHA 243 (391)
T ss_pred CCCCC-------cCCCHH---HHHHHHHHHHHHhCCCcEEeeCCC------CCccHHHHHHHHHHHHHhCCCCCEehhhh
Confidence 31111 111122 445678889999999887665321 111234555666666677753 66666
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHH
Q 014369 298 DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDV 375 (426)
Q Consensus 298 DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEev 375 (426)
...+.+.+.++.++++.+++. +. .+ +|+. ..+.++...-..+++|++..=+|=+.. .||.|...++ .++.+
T Consensus 244 ~~l~~~~~~~~~~~i~~lae~-g~-~v-~~~~-~~~~~~~~~~~l~~~Gv~v~lGtD~~~--~~~~p~~~~~-~~~~~ 314 (391)
T PRK05985 244 FCLGDLPEREVDRLAERLAEA-GV-AI-MTNA-PGSVPVPPVAALRAAGVTVFGGNDGIR--DTWWPYGNGD-MLERA 314 (391)
T ss_pred hhhhcCCHHHHHHHHHHHHHc-CC-eE-EEeC-CCCCCCCCHHHHHHCCCeEEEecCCCC--CCCcCCCCCc-HHHHH
Confidence 677788898888888888774 32 22 3543 347788899999999998665554332 2555543444 34443
No 386
>PRK08185 hypothetical protein; Provisional
Probab=89.35 E-value=4.7 Score=40.46 Aligned_cols=99 Identities=13% Similarity=0.150 Sum_probs=69.9
Q ss_pred HHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEcCCCCCCCHHHHHHHHHHHHHhcCCce
Q 014369 245 RAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE-ISLGDTIGVGTPGTVVPMLEAVMAVVPVEK 323 (426)
Q Consensus 245 ~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~-I~l~DT~G~~~P~~v~~li~~l~~~~p~~~ 323 (426)
+++++.|++.++-|-+ |.+ .+.+.+..+++++.+.+... |.+.-..--..|..+..++..+.+.... |
T Consensus 2 ~~~L~~A~~~~yaV~A-----fN~-----~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~v-P 70 (283)
T PRK08185 2 KELLKVAKEHQFAVGA-----FNV-----ADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPV-P 70 (283)
T ss_pred HHHHHHHHHcCceEEE-----EEe-----CCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCC-C
Confidence 4677889999987753 321 46789999999999999774 4444333222445578888877777653 5
Q ss_pred EEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccC
Q 014369 324 LAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAG 356 (426)
Q Consensus 324 i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~G 356 (426)
+.+ |=|.|.-......|+++|.+ ++|+|-..
T Consensus 71 V~l--HLDHg~~~e~i~~ai~~Gf~SVM~D~S~l~ 103 (283)
T PRK08185 71 FVI--HLDHGATIEDVMRAIRCGFTSVMIDGSLLP 103 (283)
T ss_pred EEE--ECCCCCCHHHHHHHHHcCCCEEEEeCCCCC
Confidence 665 45778888999999999977 66877543
No 387
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=89.26 E-value=2.2 Score=41.48 Aligned_cols=99 Identities=23% Similarity=0.343 Sum_probs=65.3
Q ss_pred HHHHHHhHhc--CCCcEEEEe-CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEE
Q 014369 183 RDVMEAVRDL--EGARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR 259 (426)
Q Consensus 183 ~~v~~~i~~~--~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~ 259 (426)
+.+...++++ .+++++.+. |+.+.++.|.+.|++.|-++... +..+.-....++.++++.+++++|+++|+.|.
T Consensus 110 ~~l~~~i~~l~~~gI~VSLFiDPd~~qi~~A~~~GAd~VELhTG~---Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~Vn 186 (234)
T cd00003 110 EKLKPIIERLKDAGIRVSLFIDPDPEQIEAAKEVGADRVELHTGP---YANAYDKAEREAELERIAKAAKLARELGLGVN 186 (234)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechh---hhcCCCchhHHHHHHHHHHHHHHHHHcCCEEe
Confidence 3444445433 467777776 78899999999999999998642 11211112335569999999999999999886
Q ss_pred EEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369 260 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG 297 (426)
Q Consensus 260 ~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~ 297 (426)
+ +.-.+.+.+..+++ --+..+++|.
T Consensus 187 A----------GHgLny~Nv~~i~~---ip~i~ElnIG 211 (234)
T cd00003 187 A----------GHGLNYENVKPIAK---IPGIAELNIG 211 (234)
T ss_pred c----------CCCCCHHHHHHHHh---CCCCeEEccC
Confidence 2 12355666666554 2345666653
No 388
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.16 E-value=8.8 Score=41.55 Aligned_cols=221 Identities=14% Similarity=0.113 Sum_probs=111.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEEEe---CChhhHHHHHHcCCCEE
Q 014369 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLT---PNLKGFEAAIAAGAKEV 218 (426)
Q Consensus 143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~---~~~~di~~a~~~Gv~~V 218 (426)
.....++-.+.++.|.++|++.||+. .++..- ...-+.++.++. .++ .+.+.+ -+.++.+.++++|+|.|
T Consensus 236 ~av~~~~~~~ra~~Lv~aGvd~i~vd--~a~g~~---~~~~~~i~~ir~~~~~-~~~V~aGnV~t~e~a~~li~aGAd~I 309 (502)
T PRK07107 236 AGINTRDYAERVPALVEAGADVLCID--SSEGYS---EWQKRTLDWIREKYGD-SVKVGAGNVVDREGFRYLAEAGADFV 309 (502)
T ss_pred eccChhhHHHHHHHHHHhCCCeEeec--Cccccc---HHHHHHHHHHHHhCCC-CceEEeccccCHHHHHHHHHcCCCEE
Confidence 34555566889999999999999997 222110 001223334442 232 233333 45788999999999999
Q ss_pred EEeccCChHHHhh-h--cCCCHHHHHHHHHHHH-HHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 014369 219 AIFASASEAFSKS-N--INCSIEDSLVRYRAVA-HAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI 294 (426)
Q Consensus 219 ~i~~~~Sd~~~~~-~--~~~s~~e~l~~~~~~v-~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I 294 (426)
.+.+...-+-... + .+...-.++..+.+++ +++++.|..+. |.. |.+-- +--+++|++. +|||.+
T Consensus 310 ~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~--via-----dgGir---~~gdi~KAla-~GA~~v 378 (502)
T PRK07107 310 KVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIP--ICS-----DGGIV---YDYHMTLALA-MGADFI 378 (502)
T ss_pred EECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcce--EEE-----cCCCC---chhHHHHHHH-cCCCee
Confidence 8865443111111 2 2333334555444444 35566684432 221 34421 2234565554 999988
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHhcCCceE---EEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCc--
Q 014369 295 SLGDTIGVGTPGTVVPMLEAVMAVVPVEKL---AVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGN-- 369 (426)
Q Consensus 295 ~l~DT~G~~~P~~v~~li~~l~~~~p~~~i---~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGN-- 369 (426)
-+.-..- . ..+.|...+ +-+.-.-+|||...++. .-++....-. .=-.+-|-.|.
T Consensus 379 m~G~~~a------------g-~~espg~~~~~~g~~~k~yrgm~s~~a~~----~~ry~~~~~~---~~~~~egv~~~v~ 438 (502)
T PRK07107 379 MLGRYFA------------R-FDESPTNKVNINGNYMKEYWGEGSNRARN----WQRYDLGGDK---KLSFEEGVDSYVP 438 (502)
T ss_pred eeChhhh------------c-cccCCCcEEEECCEEEEEeecccCHhhhh----cccccccccc---ccccCCccEEEec
Confidence 7654321 1 134454322 22444568998766553 1223210000 00000011111
Q ss_pred --ccHHHHHHHHHh-----CCCCCCcChhhHHHHHHHH
Q 014369 370 --VATEDVVYMLSG-----LGVETNVDLRKLMLAGDFI 400 (426)
Q Consensus 370 --a~lEevv~~L~~-----lG~~~~iDl~~L~~la~~v 400 (426)
=++++++..|.. +++--.-++..|.+-++++
T Consensus 439 ~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~~~f~ 476 (502)
T PRK07107 439 YAGSLKDNVAITLSKVRSTMCNCGALSIPELQQKAKIT 476 (502)
T ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhCCeEE
Confidence 146666666542 5665556778777655544
No 389
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=89.16 E-value=3.3 Score=40.35 Aligned_cols=144 Identities=19% Similarity=0.222 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHH----HhHhc-CCCcEEEEeC-C--------hhh-HHHHH
Q 014369 147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVME----AVRDL-EGARLPVLTP-N--------LKG-FEAAI 211 (426)
Q Consensus 147 ~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~----~i~~~-~~~~l~~l~~-~--------~~d-i~~a~ 211 (426)
.+....-+.....+|+++|-+|++....+ ...-+.++ .++.. ++.++.+... . ..+ .+.+.
T Consensus 66 p~~~~~aa~~~a~~GvdyvKvGl~g~~~~----~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~ 141 (235)
T PF04476_consen 66 PGTASLAALGAAATGVDYVKVGLFGCKDY----DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAA 141 (235)
T ss_pred chHHHHHHHHHHhcCCCEEEEecCCCCCH----HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHH
Confidence 34444445556678999999998754321 11222222 22222 2344433321 1 112 35678
Q ss_pred HcCCCEEEEeccCChHHHhhhcCCCHHH--HHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369 212 AAGAKEVAIFASASEAFSKSNINCSIED--SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (426)
Q Consensus 212 ~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e--~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~ 289 (426)
++|.+.+.+=. ..|. |.+.-+ ..+.+.+.++.||++|+.+- .++....+++. .|...
T Consensus 142 ~aG~~gvMlDT-----a~Kd--g~~L~d~~~~~~L~~Fv~~ar~~gL~~a----------LAGSL~~~di~----~L~~l 200 (235)
T PF04476_consen 142 EAGFDGVMLDT-----ADKD--GGSLFDHLSEEELAEFVAQARAHGLMCA----------LAGSLRFEDIP----RLKRL 200 (235)
T ss_pred HcCCCEEEEec-----ccCC--CCchhhcCCHHHHHHHHHHHHHccchhh----------ccccCChhHHH----HHHhc
Confidence 89998777632 2222 222222 35567789999999998764 23444455544 34467
Q ss_pred CCCEEEE------c-C-CCCCCCHHHHHHHHHHH
Q 014369 290 GCFEISL------G-D-TIGVGTPGTVVPMLEAV 315 (426)
Q Consensus 290 Gad~I~l------~-D-T~G~~~P~~v~~li~~l 315 (426)
++|.+.+ . | +.|...|+.|.++-+.+
T Consensus 201 ~pD~lGfRGAvC~ggdR~~G~id~~~V~~lr~~~ 234 (235)
T PF04476_consen 201 GPDILGFRGAVCGGGDRRAGRIDPELVAALRALM 234 (235)
T ss_pred CCCEEEechhhCCCCCcCccccCHHHHHHHHHhc
Confidence 8776654 2 4 35899999988876543
No 390
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=89.13 E-value=2.8 Score=41.32 Aligned_cols=83 Identities=11% Similarity=0.059 Sum_probs=69.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEEeC-CCcCcHHHHHHHHHHcC
Q 014369 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHLH-DTYGQSLPNILISLQMG 346 (426)
Q Consensus 272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H~H-Nd~GlA~ANaLaAl~aG 346 (426)
+..|.+-+.+.++.+.+.|++.|.+.-|+| .++.++-.++++.+.+... ..+|-+|.- ++..-++.-+..|.++|
T Consensus 16 g~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G 95 (284)
T cd00950 16 GSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAG 95 (284)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999998 5677888888888888775 456777775 57788899999999999
Q ss_pred CCEEeecc
Q 014369 347 ISTVDCSV 354 (426)
Q Consensus 347 a~~VD~Sv 354 (426)
++.|=..-
T Consensus 96 ~d~v~~~~ 103 (284)
T cd00950 96 ADAALVVT 103 (284)
T ss_pred CCEEEEcc
Confidence 99886653
No 391
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=89.13 E-value=20 Score=38.81 Aligned_cols=144 Identities=14% Similarity=0.139 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecC-CCCCc--cccccCHHHHHHHhHhcCCC---cEEEEeCC---hhhHHHHHHcC
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSF-VSPKW--VPQLADARDVMEAVRDLEGA---RLPVLTPN---LKGFEAAIAAG 214 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~-~s~~~--~p~~~D~~~v~~~i~~~~~~---~l~~l~~~---~~di~~a~~~G 214 (426)
..+.+..++=++.|.+.|+..|.+.-- .+..+ ........++++.+..+++. ++....|. .+-++...++|
T Consensus 185 sr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i~~l~~ir~~~~~p~~~~~ell~~m~~~g 264 (502)
T PRK14326 185 DRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEIDGLERVRFTSPHPAEFTDDVIEAMAETP 264 (502)
T ss_pred cCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHhcCCccEEEEeccChhhCCHHHHHHHHhcC
Confidence 567888888888898889998876321 00000 00001233455555544443 33332232 33456666776
Q ss_pred --CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369 215 --AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (426)
Q Consensus 215 --v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~ 289 (426)
...+++.+ +.|+.-++. +|+. ...+.+.++++.+++. |+.+.++++ +|.|..+ .+.+.+.++.+.+.
T Consensus 265 ~~~~~l~lglQSgsd~iLk~-m~R~--~t~~~~~~~v~~lr~~~~~i~i~~~~I--vGfPgET---~edf~~Tl~~i~~~ 336 (502)
T PRK14326 265 NVCPQLHMPLQSGSDRVLRA-MRRS--YRSERFLGILEKVRAAMPDAAITTDII--VGFPGET---EEDFQATLDVVREA 336 (502)
T ss_pred CcCCcEEeccCCCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCCeEEEEEE--EECCCCC---HHHHHHHHHHHHHc
Confidence 67888876 556654443 5553 2345566777788885 667777666 6778764 56667777777777
Q ss_pred CCCEEE
Q 014369 290 GCFEIS 295 (426)
Q Consensus 290 Gad~I~ 295 (426)
+.+.+.
T Consensus 337 ~~~~~~ 342 (502)
T PRK14326 337 RFSSAF 342 (502)
T ss_pred CCCEEE
Confidence 776443
No 392
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=89.11 E-value=24 Score=34.74 Aligned_cols=172 Identities=16% Similarity=0.149 Sum_probs=101.5
Q ss_pred HHHHHhCCCCeEEEecCCCCCcc-ccccCHHHHHHHhHhcCCCcEEEEeCC---------------hhhHHHHHHcCCCE
Q 014369 154 IRRLVSSGLPVVEATSFVSPKWV-PQLADARDVMEAVRDLEGARLPVLTPN---------------LKGFEAAIAAGAKE 217 (426)
Q Consensus 154 ~~~L~~~Gv~~IEvG~~~s~~~~-p~~~D~~~v~~~i~~~~~~~l~~l~~~---------------~~di~~a~~~Gv~~ 217 (426)
+..-.+.|.++||+=.-....+. |. ..+++.+++..++.+.+|.|. .+|++.+.+.|++.
T Consensus 14 a~~A~~~GAdRiELc~~L~~GGlTPS----~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadG 89 (248)
T PRK11572 14 ALTAQQAGADRIELCAAPKEGGLTPS----LGVLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPG 89 (248)
T ss_pred HHHHHHcCCCEEEEccCcCCCCcCCC----HHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCE
Confidence 34457889999999532221111 21 244455554446777777742 24678888999998
Q ss_pred EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369 218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG 297 (426)
Q Consensus 218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~ 297 (426)
|.+-+-..+.. .+ .++++++++.|+ ++++. +=.+| |..+ ++. +..+.+.++|+++|-=.
T Consensus 90 vV~G~L~~dg~------vD----~~~~~~Li~~a~--~~~vT--FHRAf---D~~~-d~~---~al~~l~~lG~~rILTS 148 (248)
T PRK11572 90 LVTGVLDVDGH------VD----MPRMRKIMAAAG--PLAVT--FHRAF---DMCA-NPL---NALKQLADLGVARILTS 148 (248)
T ss_pred EEEeeECCCCC------cC----HHHHHHHHHHhc--CCceE--Eechh---hccC-CHH---HHHHHHHHcCCCEEECC
Confidence 88875443321 11 345667777774 55554 33445 3322 333 46778889999887532
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 014369 298 DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG 356 (426)
Q Consensus 298 DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~G 356 (426)
-|..+..+-.+.++.+.+......|-. -=|.-..|+-.=++.|++.||.|-..
T Consensus 149 --Gg~~~a~~g~~~L~~lv~~a~~~~Im~----GgGV~~~Nv~~l~~tG~~~~H~s~~~ 201 (248)
T PRK11572 149 --GQQQDAEQGLSLIMELIAASDGPIIMA----GAGVRLSNLHKFLDAGVREVHSSAGQ 201 (248)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEe----CCCCCHHHHHHHHHcCCCEEeeCCCc
Confidence 333445666677777766554321211 23555567655568999999988653
No 393
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=89.10 E-value=12 Score=35.71 Aligned_cols=150 Identities=15% Similarity=0.187 Sum_probs=90.6
Q ss_pred ChhhHHHHHHcCC-CEEEEeccCChHHHhhhcCC-CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369 203 NLKGFEAAIAAGA-KEVAIFASASEAFSKSNINC-SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA 280 (426)
Q Consensus 203 ~~~di~~a~~~Gv-~~V~i~~~~Sd~~~~~~~~~-s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~ 280 (426)
+.+.++.+.+.|. + .+.++|...+.. |. +.++.+.++.+.+ + .+|.+.+ + ..+.+.+.
T Consensus 8 ~~~ei~~~~~~~~i~----GvTTNPsll~k~-~~~~~~~~~~~i~~~~----~--~~v~~qv---~------~~~~e~~i 67 (211)
T cd00956 8 DLEEIKKASETGLLD----GVTTNPSLIAKS-GRIDFEAVLKEICEII----D--GPVSAQV---V------STDAEGMV 67 (211)
T ss_pred CHHHHHHHHhcCCcC----ccccCHHHHHhc-CCcCHHHHHHHHHHhc----C--CCEEEEE---E------eCCHHHHH
Confidence 4566666666653 2 345566665543 44 5555555444443 2 2233222 1 14678888
Q ss_pred HHHHHHHhC-CCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369 281 YVAKELHDM-GCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG 359 (426)
Q Consensus 281 ~~~~~l~~~-Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe 359 (426)
+.++.+.+. |--.|-|+=|. +-.+.++.|++. +++++-+.=+...-+++|.++||++|.--++-+-.
T Consensus 68 ~~a~~l~~~~~~~~iKIP~T~------~gl~ai~~L~~~------gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~~~ 135 (211)
T cd00956 68 AEARKLASLGGNVVVKIPVTE------DGLKAIKKLSEE------GIKTNVTAIFSAAQALLAAKAGATYVSPFVGRIDD 135 (211)
T ss_pred HHHHHHHHhCCCEEEEEcCcH------hHHHHHHHHHHc------CCceeeEEecCHHHHHHHHHcCCCEEEEecChHhh
Confidence 889998887 54456666554 334456666554 23344444567788999999999998777776543
Q ss_pred CCCCCCCCCcccHHHHHHHHHhCCCCCCc
Q 014369 360 CPYAKGASGNVATEDVVYMLSGLGVETNV 388 (426)
Q Consensus 360 cP~a~graGNa~lEevv~~L~~lG~~~~i 388 (426)
.|..|..-++++..+++.+|+++.+
T Consensus 136 ----~g~dg~~~i~~i~~~~~~~~~~tki 160 (211)
T cd00956 136 ----LGGDGMELIREIRTIFDNYGFDTKI 160 (211)
T ss_pred ----cCCCHHHHHHHHHHHHHHcCCCceE
Confidence 2345666666777777777777554
No 394
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=89.06 E-value=3.1 Score=41.52 Aligned_cols=83 Identities=8% Similarity=0.071 Sum_probs=71.1
Q ss_pred CCCCCHHHHHHHHHHHHhCC-CCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHH
Q 014369 271 EGAIPPSKVAYVAKELHDMG-CFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQ 344 (426)
Q Consensus 271 ~~r~~~~~l~~~~~~l~~~G-ad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~ 344 (426)
.+..|.+.+.+.++.+.+.| ++.|.+.-|+|= +++++-.++++.+.+... ..+|-+|. |++.--++..+..|.+
T Consensus 15 dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~ 94 (290)
T TIGR00683 15 DGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATE 94 (290)
T ss_pred CCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999 999999999874 778888889988888764 45788885 7888889999999999
Q ss_pred cCCCEEeec
Q 014369 345 MGISTVDCS 353 (426)
Q Consensus 345 aGa~~VD~S 353 (426)
+||+.|=..
T Consensus 95 ~Gad~v~v~ 103 (290)
T TIGR00683 95 LGYDCLSAV 103 (290)
T ss_pred hCCCEEEEe
Confidence 999988663
No 395
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=88.95 E-value=3 Score=44.73 Aligned_cols=69 Identities=13% Similarity=0.131 Sum_probs=54.3
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 014369 280 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV 354 (426)
Q Consensus 280 ~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv 354 (426)
.+.++.+.++|++.|.+-++-|. +..+.+.++.+++.+|+.+|.+ -.++-...+..++++||+.|++.+
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~--~~~vl~~i~~i~~~~p~~~vi~----g~v~t~e~a~~l~~aGad~i~vg~ 298 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGH--SEGVLDRVREIKAKYPDVQIIA----GNVATAEAARALIEAGADAVKVGI 298 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCc--chhHHHHHHHHHhhCCCCCEEE----eccCCHHHHHHHHHcCCCEEEECC
Confidence 67788899999998765444344 5789999999999998767666 345566788999999999999654
No 396
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=88.94 E-value=32 Score=36.99 Aligned_cols=250 Identities=17% Similarity=0.128 Sum_probs=139.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc--CCCcEEEEeCChhhHH---HHHHcCCCEE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL--EGARLPVLTPNLKGFE---AAIAAGAKEV 218 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~~~~~di~---~a~~~Gv~~V 218 (426)
.++..++.+| +.+.+.|++.|-+.+--++ .|-..+.+.+... .++.+.+..-+.++++ ..++. .+
T Consensus 168 ~ltekD~~Dl-~~~~~~~~d~I~lskV~sa------~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~-~d-- 237 (473)
T TIGR01064 168 ALSEKDKKDL-KFGVEQGVDMVAASFVRTA------EDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEA-SD-- 237 (473)
T ss_pred CCCHHHHHHH-HHHHHCCCCEEEECCCCCH------HHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhh-CC--
Confidence 3666676665 5667899999877653332 2333334444432 2455666665554443 33333 45
Q ss_pred EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEE---EeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 014369 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV---SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS 295 (426)
Q Consensus 219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v---~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~ 295 (426)
.+++...|+-..- + .++......+++..|+.+|+.+.+.- .-+...|.-+|++..++..+ ...|+|.|.
T Consensus 238 gi~iG~gDL~~~l--g--~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~----v~~G~d~v~ 309 (473)
T TIGR01064 238 GIMVARGDLGVEI--P--AEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANA----ILDGTDAVM 309 (473)
T ss_pred cEEEchHHHHhhc--C--cHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHH----HHcCCCEEE
Confidence 5666666754443 3 25666677788999999999876311 00123555677777665554 468999888
Q ss_pred E-cCCCCCCCHHHHHHHHHHHHHhcCCc-e-EE-E-EeC------CC--cCcHHHHHHHHHHcCCC-EEeecccCCCC--
Q 014369 296 L-GDTIGVGTPGTVVPMLEAVMAVVPVE-K-LA-V-HLH------DT--YGQSLPNILISLQMGIS-TVDCSVAGLGG-- 359 (426)
Q Consensus 296 l-~DT~G~~~P~~v~~li~~l~~~~p~~-~-i~-~-H~H------Nd--~GlA~ANaLaAl~aGa~-~VD~Sv~GlGe-- 359 (426)
| .||.=.-.|.+..+.+..+....-.. . .. + |.. ++ -.++.+...+|-..+++ +|--|-.|---
T Consensus 310 ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~akaIVv~T~SG~TA~~ 389 (473)
T TIGR01064 310 LSGETAKGKYPVEAVKMMAKIAKEAEKALAYLTNFNDRKNSDPKPSTITEAIALSAVEAAEKLDAKAIVVLTESGRTARL 389 (473)
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCEEEEEcCChHHHHH
Confidence 7 56666678988888888887654210 0 00 0 100 11 23455555667778887 66666665321
Q ss_pred ---C-CCCCCCCCcccHHHHHHHHHh-CCCCC------CcChhhHHHHHHHHHHHhCCCCCCCC
Q 014369 360 ---C-PYAKGASGNVATEDVVYMLSG-LGVET------NVDLRKLMLAGDFINKHLGRPSGSKT 412 (426)
Q Consensus 360 ---c-P~a~graGNa~lEevv~~L~~-lG~~~------~iDl~~L~~la~~v~~~~g~~~~~~~ 412 (426)
+ |-.|- -+-++-+.+...|.- .|+.+ .-|.+.+...+.......|.--+..+
T Consensus 390 vSr~rp~~PI-iAvT~~~~v~R~L~L~wGV~Pil~~~~~~~~~~~i~~a~~~l~~~gl~~~GD~ 452 (473)
T TIGR01064 390 LSKYRPNAPI-IAVTPNERVARQLALYWGVFPFLVDEEPSDTEARVNKALELLKEKGILKKGDL 452 (473)
T ss_pred HHhhCCCCCE-EEEcCCHHHHHHhhccCCcEEEEeCCCCCCHHHHHHHHHHHHHHcCCCCCCCE
Confidence 0 11111 233445677777765 36643 22555555544444444565444443
No 397
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=88.90 E-value=27 Score=34.89 Aligned_cols=206 Identities=16% Similarity=0.136 Sum_probs=126.0
Q ss_pred CCCccEEEeCC---ccccCCC---CCC-CC-CHHHHHHHHHHHHhCCCCeEEEecC---CCCCccccccCHHHHHHHhHh
Q 014369 123 IPRFVKIVEVG---PRDGLQN---EKN-TV-PTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVRD 191 (426)
Q Consensus 123 ~p~~V~I~D~T---LRDG~Q~---~~~-~f-~~~~ki~I~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~~~v~~~i~~ 191 (426)
..+.++++|+. .+.|... .|- .+ +.++...+|+.+.++|.+.+--|-| .||...-.+ . ++-+..+++
T Consensus 26 ~~~~~tivd~~~~~~g~~~~~~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGl-g-e~gL~~l~~ 103 (286)
T COG2876 26 VKKEDTIVDVGDVVIGEGRALRVIAGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGL-G-EEGLKLLKR 103 (286)
T ss_pred ccccceeeccccceecCCcceEEEecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCccccccc-C-HHHHHHHHH
Confidence 45556777765 5555321 121 23 6788889999999999999988844 233222112 2 223333332
Q ss_pred ---cCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC
Q 014369 192 ---LEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC 268 (426)
Q Consensus 192 ---~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~ 268 (426)
..+..+..=+.+.++++.+.+. +|.+.|... +++| + .+.+.+-+.+.+|- +..-
T Consensus 104 a~~~~Gl~vvtEvm~~~~~e~~~~y-~DilqvGAR-----NMQN--------F----~LLke~G~~~kPvL--LKRg--- 160 (286)
T COG2876 104 AADETGLPVVTEVMDVRDVEAAAEY-ADILQVGAR-----NMQN--------F----ALLKEVGRQNKPVL--LKRG--- 160 (286)
T ss_pred HHHHcCCeeEEEecCHHHHHHHHhh-hhHHHhccc-----chhh--------h----HHHHHhcccCCCeE--EecC---
Confidence 2233333334588899988887 787777532 1111 2 33444555566664 2221
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC----CCCCCHHHH-HHHHHHHHHh--cCCceEEE-EeCCCcCcHHHHHH
Q 014369 269 PVEGAIPPSKVAYVAKELHDMGCFEISLGDT----IGVGTPGTV-VPMLEAVMAV--VPVEKLAV-HLHDTYGQSLPNIL 340 (426)
Q Consensus 269 pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT----~G~~~P~~v-~~li~~l~~~--~p~~~i~~-H~HNd~GlA~ANaL 340 (426)
--.+.++.+..++-+...|...|.||.- .-..++... -.-|..+|+. +|.+ +.. |.-+..-+=..-+.
T Consensus 161 ---~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~THLPVi-vDpSH~~Grr~lv~pla~ 236 (286)
T COG2876 161 ---LSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQETHLPVI-VDPSHATGRRDLVEPLAK 236 (286)
T ss_pred ---ccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhcCCCEE-ECCCCcccchhhHHHHHH
Confidence 1246788888899999999988888863 223333221 1124455553 4642 333 88888999999999
Q ss_pred HHHHcCCCEEeecccCC
Q 014369 341 ISLQMGISTVDCSVAGL 357 (426)
Q Consensus 341 aAl~aGa~~VD~Sv~Gl 357 (426)
+|+.+|||.+-..+..=
T Consensus 237 AA~AaGAdglmiEVHp~ 253 (286)
T COG2876 237 AAIAAGADGLMIEVHPD 253 (286)
T ss_pred HHHhccCCeeEEEecCC
Confidence 99999999998887753
No 398
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=88.90 E-value=15 Score=38.24 Aligned_cols=93 Identities=17% Similarity=0.245 Sum_probs=68.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHH-HHHHHHHHcCCC
Q 014369 270 VEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGIS 348 (426)
Q Consensus 270 d~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~-ANaLaAl~aGa~ 348 (426)
..+-.+++.-.+-++.+.+.+.+.+.|.--...-...++.++++.++..+|.. --.|. +|.|. .+.+.++..|+|
T Consensus 188 VQGg~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge~~~~~~~~v~~~~~~lp~~-kPryl---~Gvg~P~~i~~~v~~GvD 263 (366)
T PRK00112 188 VQGGVYEDLRRESAKGLVEIDFDGYAIGGLSVGEPKEEMYRILEHTAPLLPED-KPRYL---MGVGTPEDLVEGVARGVD 263 (366)
T ss_pred eeCCccHHHHHHHHHHHHhCCCceeEeccccCCCCHHHHHHHHHHHHhhCCCc-CCeEe---cCCCCHHHHHHHHHcCCC
Confidence 34556667667788889999999999998544457888999999999999742 22343 45555 789999999999
Q ss_pred EEeecccCCCCCCCCCCCCCcccH
Q 014369 349 TVDCSVAGLGGCPYAKGASGNVAT 372 (426)
Q Consensus 349 ~VD~Sv~GlGecP~a~graGNa~l 372 (426)
.+|++.-=.=. |.|.+=+
T Consensus 264 ~FD~~~p~r~A------r~G~alt 281 (366)
T PRK00112 264 MFDCVMPTRNA------RNGTLFT 281 (366)
T ss_pred EEeeCCccccc------cCCceeC
Confidence 99988754333 6665444
No 399
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=88.80 E-value=22 Score=33.73 Aligned_cols=178 Identities=18% Similarity=0.120 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhCCCCeEEEecCCC-CCccccccCHHHHHHHhHhcCCCcEEE--EeCChhhHHHHHHcCCCEEEEeccC
Q 014369 148 GVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIFASA 224 (426)
Q Consensus 148 ~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~~di~~a~~~Gv~~V~i~~~~ 224 (426)
..-+++++.+.+.|++.+-+.-... ... .-.+. ++.+.+.+..+.++.+ -+++.++++.+.+.|++.|.+-...
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~g--~~~~~-~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~ 106 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKAG--KPVNL-ELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAA 106 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccC--CcccH-HHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchH
Confidence 4668899999999999988864211 000 01123 3333333333444433 4578899999999999987654221
Q ss_pred ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEE----EeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 014369 225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV----SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI 300 (426)
Q Consensus 225 Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v----~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~ 300 (426)
- +..+.+.++++...+. +.+...+ ....+-. ..+...+.++++.+.++|++.|.+-|..
T Consensus 107 l-------------~~~~~l~ei~~~~~~~-i~vsid~k~~~v~~~g~~---~~~~~~~~e~~~~~~~~g~~~ii~~~~~ 169 (233)
T PRK00748 107 V-------------KNPELVKEACKKFPGK-IVVGLDARDGKVATDGWL---ETSGVTAEDLAKRFEDAGVKAIIYTDIS 169 (233)
T ss_pred H-------------hCHHHHHHHHHHhCCC-ceeeeeccCCEEEEccCe---ecCCCCHHHHHHHHHhcCCCEEEEeeec
Confidence 0 1112233444333221 2221111 0000100 0112344567888889999977776543
Q ss_pred --CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CCEE
Q 014369 301 --GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTV 350 (426)
Q Consensus 301 --G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~~V 350 (426)
|...-. -.++++.+++..+. ++-..+.-. ...-....++.| |+.|
T Consensus 170 ~~g~~~G~-d~~~i~~l~~~~~i-pvia~GGi~---~~~di~~~~~~g~~~gv 217 (233)
T PRK00748 170 RDGTLSGP-NVEATRELAAAVPI-PVIASGGVS---SLDDIKALKGLGAVEGV 217 (233)
T ss_pred CcCCcCCC-CHHHHHHHHHhCCC-CEEEeCCCC---CHHHHHHHHHcCCccEE
Confidence 332221 14667777776653 455533211 123344455555 5543
No 400
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=88.80 E-value=11 Score=37.24 Aligned_cols=81 Identities=9% Similarity=-0.043 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC-CCC--EEEEcCCCCCCCHHHHHHHHHHHHH
Q 014369 241 LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM-GCF--EISLGDTIGVGTPGTVVPMLEAVMA 317 (426)
Q Consensus 241 l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~-Gad--~I~l~DT~G~~~P~~v~~li~~l~~ 317 (426)
++.+.+.++.|++.|..... ...|.-...+.+.+.+..+.+.+. +.. .-.++...|...+. ++++.|.
T Consensus 82 ~~~~i~~a~~a~~~G~d~v~-----~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~---~~~~~L~- 152 (292)
T PRK03170 82 TAEAIELTKFAEKAGADGAL-----VVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILP---ETVARLA- 152 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEE-----ECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCH---HHHHHHH-
Confidence 34455666778888886431 224544455667777777776653 333 22345566765553 3444553
Q ss_pred hcCCceEEE-EeCCC
Q 014369 318 VVPVEKLAV-HLHDT 331 (426)
Q Consensus 318 ~~p~~~i~~-H~HNd 331 (426)
..|.+ +++ ..+.|
T Consensus 153 ~~p~v-~giK~s~~d 166 (292)
T PRK03170 153 EHPNI-VGIKEATGD 166 (292)
T ss_pred cCCCE-EEEEECCCC
Confidence 45753 555 34444
No 401
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=88.78 E-value=8.6 Score=34.84 Aligned_cols=118 Identities=12% Similarity=0.026 Sum_probs=64.5
Q ss_pred HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCC-C--CCCC------HH
Q 014369 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-E--GAIP------PS 277 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd-~--~r~~------~~ 277 (426)
++.+.++|++.|.+......... +....+.++.+.++++|+.+...-........ . .... .+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~---------~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 71 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWD---------EKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALE 71 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHT---------HHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccc---------cchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHH
Confidence 46788899998888754221110 00345667778888999986532222221111 0 1122 56
Q ss_pred HHHHHHHHHHhCCCCEEEEc-----CCCCCCCHHHHHHHHHHHHHhcC-----CceEEEEeCCCcC
Q 014369 278 KVAYVAKELHDMGCFEISLG-----DTIGVGTPGTVVPMLEAVMAVVP-----VEKLAVHLHDTYG 333 (426)
Q Consensus 278 ~l~~~~~~l~~~Gad~I~l~-----DT~G~~~P~~v~~li~~l~~~~p-----~~~i~~H~HNd~G 333 (426)
.+.+.++.+..+|++.+.+. .............+++.+++..+ ++.|.++.|....
T Consensus 72 ~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~ 137 (213)
T PF01261_consen 72 YLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPF 137 (213)
T ss_dssp HHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSS
T ss_pred HHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCcc
Confidence 77888888888899988777 22233333444444444433221 2356666665544
No 402
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=88.77 E-value=9.2 Score=36.09 Aligned_cols=134 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred hhHHHHHHcCCCEEEE-eccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369 205 KGFEAAIAAGAKEVAI-FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYV 282 (426)
Q Consensus 205 ~di~~a~~~Gv~~V~i-~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~~l~~~ 282 (426)
+..+.+.++|++.|.| .-..+....+..+|.+.++-.+.+.++++..++. ++.+.+-+...+..+ +...++
T Consensus 71 ~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~-------~~~~~~ 143 (231)
T cd02801 71 EAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE-------EETLEL 143 (231)
T ss_pred HHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc-------hHHHHH
Q ss_pred HHHHHhCCCCEEEEcCCCC--CCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCc-HHHHHHHHHHc-CCCEE
Q 014369 283 AKELHDMGCFEISLGDTIG--VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQM-GISTV 350 (426)
Q Consensus 283 ~~~l~~~Gad~I~l~DT~G--~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~Gl-A~ANaLaAl~a-Ga~~V 350 (426)
++.+.++|++.|.+-+-.. ...+..-.+.++.+++.... +|.. +=|. ....+..+++. ||+.|
T Consensus 144 ~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~i-pvi~----~Ggi~~~~d~~~~l~~~gad~V 210 (231)
T cd02801 144 AKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSI-PVIA----NGDIFSLEDALRCLEQTGVDGV 210 (231)
T ss_pred HHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCC-eEEE----eCCCCCHHHHHHHHHhcCCCEE
No 403
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=88.77 E-value=3.3 Score=41.37 Aligned_cols=81 Identities=10% Similarity=0.036 Sum_probs=64.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCC
Q 014369 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGI 347 (426)
Q Consensus 272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa 347 (426)
+..|.+-+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+++... ..+|-+|.=.+..-++..+..|.++||
T Consensus 21 g~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~Ga 100 (296)
T TIGR03249 21 GSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAGA 100 (296)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhCC
Confidence 678999999999999999999999999998 4567888888888877764 345666653346677778888889999
Q ss_pred CEEee
Q 014369 348 STVDC 352 (426)
Q Consensus 348 ~~VD~ 352 (426)
+.+=.
T Consensus 101 dav~~ 105 (296)
T TIGR03249 101 DGYLL 105 (296)
T ss_pred CEEEE
Confidence 98733
No 404
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=88.77 E-value=19 Score=37.02 Aligned_cols=139 Identities=14% Similarity=0.130 Sum_probs=88.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCC--CCCccccccCHHHHHHHhHhcCCCcEEEEeC-----ChhhHHHHHHcCCC
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFV--SPKWVPQLADARDVMEAVRDLEGARLPVLTP-----NLKGFEAAIAAGAK 216 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~--s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-----~~~di~~a~~~Gv~ 216 (426)
.+..+.-++-.+...+.-=+-+|+=... .|-..|-+ .++.+.++..++..+..+-. +.+-++...++|+|
T Consensus 140 ~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~l---~~lVqalk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLd 216 (414)
T COG2100 140 VVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPHL---VDLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLD 216 (414)
T ss_pred EecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccchhH---HHHHHHHhcCCCceEEEEeeCceeccHHHHHHHHHhCCc
Confidence 4567777777777777766777874321 22223333 56777788888877666532 35668888899999
Q ss_pred EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 014369 217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291 (426)
Q Consensus 217 ~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Ga 291 (426)
+|.+.+..=|.-.-..+---....++++.++++++.+.|+.|-.+=-..+| ...++..++++.+.+.|+
T Consensus 217 RiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv~lPG------~ND~E~~~iIe~A~~iGa 285 (414)
T COG2100 217 RINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPVWLPG------VNDDEMPKIIEWAREIGA 285 (414)
T ss_pred eEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEeeeecCC------cChHHHHHHHHHHHHhCC
Confidence 999997554443333332222345777888899999999987632221121 345667777777777665
No 405
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=88.76 E-value=5.1 Score=39.38 Aligned_cols=164 Identities=18% Similarity=0.226 Sum_probs=89.8
Q ss_pred HHHHHHHhCCCCeEEEecC-CCCCccccccCHHHHHHHhHhcCCCcE---EEEeCCh-hhH---HHHHHc-CCCEEEEec
Q 014369 152 ELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARL---PVLTPNL-KGF---EAAIAA-GAKEVAIFA 222 (426)
Q Consensus 152 ~I~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~~~v~~~i~~~~~~~l---~~l~~~~-~di---~~a~~~-Gv~~V~i~~ 222 (426)
.+.+.|..+|.+.+-+..- .+.. + ...+.+++.++. .+.++ .+-+++- +.+ +.|.+. |.++|-+-+
T Consensus 24 ~~~~ai~aSg~~ivTva~rR~~~~---~-~~~~~~~~~i~~-~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEV 98 (248)
T cd04728 24 IMKEAIEASGAEIVTVALRRVNIG---D-PGGESFLDLLDK-SGYTLLPNTAGCRTAEEAVRTARLAREALGTDWIKLEV 98 (248)
T ss_pred HHHHHHHHhCCCEEEEEEEecccC---C-CCcchHHhhccc-cCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3567788999998888642 1110 0 112233444432 11111 1222332 233 333443 778998886
Q ss_pred cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc---CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--
Q 014369 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG-- 297 (426)
Q Consensus 223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~---G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~-- 297 (426)
-..+- --+.+..+.+++|+++ |+.|..|.. .|+ ..++++.++|++.| -+
T Consensus 99 i~d~~-----------~Llpd~~~tv~aa~~L~~~Gf~vlpyc~----------dd~----~~ar~l~~~G~~~v-mPlg 152 (248)
T cd04728 99 IGDDK-----------TLLPDPIETLKAAEILVKEGFTVLPYCT----------DDP----VLAKRLEDAGCAAV-MPLG 152 (248)
T ss_pred ecCcc-----------ccccCHHHHHHHHHHHHHCCCEEEEEeC----------CCH----HHHHHHHHcCCCEe-CCCC
Confidence 54442 1244556677777777 998764332 123 35788889999988 33
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 298 DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 298 DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
..+|....-.-.++|+.+++..+ +++-+-++= +. -.-+..|++.||+.|
T Consensus 153 ~pIGsg~Gi~~~~~I~~I~e~~~-vpVI~egGI--~t-peda~~AmelGAdgV 201 (248)
T cd04728 153 SPIGSGQGLLNPYNLRIIIERAD-VPVIVDAGI--GT-PSDAAQAMELGADAV 201 (248)
T ss_pred cCCCCCCCCCCHHHHHHHHHhCC-CcEEEeCCC--CC-HHHHHHHHHcCCCEE
Confidence 55555554444666777777632 233332211 11 256778899999955
No 406
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=88.63 E-value=12 Score=37.40 Aligned_cols=82 Identities=13% Similarity=0.037 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh-C-CCC--EEEEcCCCCCCCHHHHHHHHHHHH
Q 014369 241 LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD-M-GCF--EISLGDTIGVGTPGTVVPMLEAVM 316 (426)
Q Consensus 241 l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~-~-Gad--~I~l~DT~G~~~P~~v~~li~~l~ 316 (426)
.+...+.+++|++.|..... ...|.-.+.+.+.+....+.+.+ . +.. .-.++...|.-.|.+ ++..|.
T Consensus 82 t~~~i~la~~a~~~Gad~v~-----v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~---~i~~L~ 153 (290)
T TIGR00683 82 LKEAVELGKYATELGYDCLS-----AVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIE---QFGELY 153 (290)
T ss_pred HHHHHHHHHHHHHhCCCEEE-----EeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHH---HHHHHh
Confidence 34445677788888986431 12455555667778777777654 3 333 345566677655533 233343
Q ss_pred HhcCCceEEE-EeCCCc
Q 014369 317 AVVPVEKLAV-HLHDTY 332 (426)
Q Consensus 317 ~~~p~~~i~~-H~HNd~ 332 (426)
+ .|.+ +++ +.+.|.
T Consensus 154 ~-~pnv-~giK~s~~d~ 168 (290)
T TIGR00683 154 K-NPKV-LGVKFTAGDF 168 (290)
T ss_pred c-CCCE-EEEEeCCCCH
Confidence 3 4653 555 345554
No 407
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=88.61 E-value=11 Score=42.73 Aligned_cols=158 Identities=16% Similarity=0.140 Sum_probs=93.8
Q ss_pred HHHHHcCCCEEEEecc--------CChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc---CCcEEEEEEeeecCCCCCCC
Q 014369 208 EAAIAAGAKEVAIFAS--------ASEA--FSKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGAI 274 (426)
Q Consensus 208 ~~a~~~Gv~~V~i~~~--------~Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~---G~~v~~~v~~~fg~pd~~r~ 274 (426)
++|.++|.|.|.|... +|+. ++...+|-+.++=+..+.++++.+|+. ++.|.+-|+..-. ..+-.
T Consensus 558 ~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~--~~~g~ 635 (765)
T PRK08255 558 RRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDW--VEGGN 635 (765)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccc--cCCCC
Confidence 3556789999888654 2443 234456778887777778888888774 3556555553210 12235
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCH--------HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC
Q 014369 275 PPSKVAYVAKELHDMGCFEISLGDTIGVGTP--------GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG 346 (426)
Q Consensus 275 ~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P--------~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG 346 (426)
+++...++++.+.++|+|.|.+. .|...+ .....+.+.+|+.+...-+.+-..++ ...+..+++.|
T Consensus 636 ~~~~~~~~~~~l~~~g~d~i~vs--~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~----~~~a~~~l~~g 709 (765)
T PRK08255 636 TPDDAVEIARAFKAAGADLIDVS--SGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISE----ADHVNSIIAAG 709 (765)
T ss_pred CHHHHHHHHHHHHhcCCcEEEeC--CCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCC----HHHHHHHHHcC
Confidence 78888999999999999999884 121111 11234567777776542233333333 34456677766
Q ss_pred -CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369 347 -ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE 385 (426)
Q Consensus 347 -a~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~ 385 (426)
+|.| ++|+ .=.+.-+-+...++++|++
T Consensus 710 ~~D~v-----~~gR-------~~l~dP~~~~~~~~~~~~~ 737 (765)
T PRK08255 710 RADLC-----ALAR-------PHLADPAWTLHEAAEIGYR 737 (765)
T ss_pred Cccee-----eEcH-------HHHhCccHHHHHHHHcCCC
Confidence 6655 4443 3333334455556666654
No 408
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=88.53 E-value=19 Score=35.77 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=68.0
Q ss_pred CCCcEEEEeC-ChhhHHHHHHcCCCEEEEeccCChHHHhh--hcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC
Q 014369 193 EGARLPVLTP-NLKGFEAAIAAGAKEVAIFASASEAFSKS--NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP 269 (426)
Q Consensus 193 ~~~~l~~l~~-~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~--~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p 269 (426)
.+-++.+++. +--..+.+.++|+|.|-+-.+..-...-+ ....|.++++...+.+.+-++. -+ +. ...|
T Consensus 13 ~g~~i~m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~-~~-vv------~DmP 84 (263)
T TIGR00222 13 QEEKIVAITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPN-CL-IV------TDLP 84 (263)
T ss_pred CCCcEEEEeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCC-ce-EE------eCCC
Confidence 3456666653 44555666789999888654332211111 1245788888777666555432 11 11 1245
Q ss_pred CCCCCCHHHHHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHHHHHHh
Q 014369 270 VEGAIPPSKVAYVAKELHD-MGCFEISLGDTIGVGTPGTVVPMLEAVMAV 318 (426)
Q Consensus 270 d~~r~~~~~l~~~~~~l~~-~Gad~I~l~DT~G~~~P~~v~~li~~l~~~ 318 (426)
..+..+++.....+.++.+ +|++.|.|-|. .++.++|+.+.+.
T Consensus 85 f~sy~~~e~a~~na~rl~~eaGa~aVkiEgg------~~~~~~i~~l~~~ 128 (263)
T TIGR00222 85 FMSYATPEQALKNAARVMQETGANAVKLEGG------EWLVETVQMLTER 128 (263)
T ss_pred cCCCCCHHHHHHHHHHHHHHhCCeEEEEcCc------HhHHHHHHHHHHC
Confidence 5554468777776766655 99999999996 4456667776653
No 409
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=88.51 E-value=9.6 Score=41.13 Aligned_cols=135 Identities=13% Similarity=0.121 Sum_probs=85.5
Q ss_pred HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHH---HhcCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA---KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 283 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~A---k~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~ 283 (426)
++.-...|.|.+..+.-..+ +..+.+++-+.+.+..+.+ ++.--.-. ...|| +..|-..++.-.+-+
T Consensus 108 i~~Q~~iGsDI~~~LD~~t~------~~~~~~~~~~sv~rT~rwa~~~~~~~~~~~---~~l~g-iVQGg~~~dLR~~sa 177 (487)
T PRK13533 108 LEFQRKIGSDIGVPLDIPTP------PDVDYEEAEEELEETLERLEEAAELIQDGD---MLWVA-PVQGGTYPDLREESA 177 (487)
T ss_pred HHHHHHhCCCEEeECCccCC------CCCCHHHHHHHHHHHHHHHHHHHHhhhccC---ccEEE-EecCCCCHHHHHHHH
Confidence 44444578887776643222 2233444444444443333 32110000 01122 345667788888899
Q ss_pred HHHHhCCCCEEEEcCCCCCC---CHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcH-HHHHHHHHHcCCCEEeecccC
Q 014369 284 KELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQS-LPNILISLQMGISTVDCSVAG 356 (426)
Q Consensus 284 ~~l~~~Gad~I~l~DT~G~~---~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~VD~Sv~G 356 (426)
+.+.++|.+.+.|.-.+..+ ...++.+++..++..+| +.++.+ +|.| ..+...++..|+|.+|++..-
T Consensus 178 ~~l~~~~f~gyaIGgl~~~~e~y~~~~~~~ii~~~~~~Lp~dkPryL-----~GvG~P~~i~~~V~lGvDlFD~v~pt 250 (487)
T PRK13533 178 REASKLGFDVYPIGAVVPLMERYRYDDLVDVVLAAKRGLGPGAPVHL-----FGAGHPMMFALAVALGCDLFDSAAYA 250 (487)
T ss_pred HHHHhCCCCEEEEcCcccccccCCHHHHHHHHHHHHhhCCCCCceEE-----eCCCCHHHHHHHHHhCCCceeccHHH
Confidence 99999999999988765555 56889999999999986 444433 3555 368999999999999987643
No 410
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=88.50 E-value=4.3 Score=43.55 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=13.3
Q ss_pred cChhhHHHHHHHHHHHhCCCCC
Q 014369 388 VDLRKLMLAGDFINKHLGRPSG 409 (426)
Q Consensus 388 iDl~~L~~la~~v~~~~g~~~~ 409 (426)
.....+.++.+.+.+..++|+.
T Consensus 179 l~P~~v~~Lv~~lk~~~~vpI~ 200 (467)
T PRK14041 179 LTPKRAYELVKALKKKFGVPVE 200 (467)
T ss_pred cCHHHHHHHHHHHHHhcCCceE
Confidence 3556666666666666655443
No 411
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=88.43 E-value=23 Score=34.17 Aligned_cols=111 Identities=25% Similarity=0.284 Sum_probs=67.2
Q ss_pred EEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC---HHHHHHHHHHHHHhc-CC-ceE--EEEeCCCcCc
Q 014369 262 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT---PGTVVPMLEAVMAVV-PV-EKL--AVHLHDTYGQ 334 (426)
Q Consensus 262 v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~---P~~v~~li~~l~~~~-p~-~~i--~~H~HNd~Gl 334 (426)
++.+.|.|.+. ...+.-..-++.+.+.|++.|-+.=-+|... ...+.+-++.+++.. |. +++ +.--=++..+
T Consensus 60 v~tVigFP~G~-~~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i 138 (221)
T PRK00507 60 VCTVIGFPLGA-NTTAVKAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEK 138 (221)
T ss_pred EEEEecccCCC-ChHHHHHHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHH
Confidence 45556778754 3344434446678889999888765555432 355666666666643 31 233 2222233333
Q ss_pred HHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCC
Q 014369 335 SLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG 383 (426)
Q Consensus 335 A~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG 383 (426)
..-+..++++|+++|-++- |++ +|.+.+|++-.+.+..+
T Consensus 139 -~~a~~~~~~agadfIKTsT-G~~--------~~gat~~~v~~m~~~~~ 177 (221)
T PRK00507 139 -VKACEIAKEAGADFVKTST-GFS--------TGGATVEDVKLMRETVG 177 (221)
T ss_pred -HHHHHHHHHhCCCEEEcCC-CCC--------CCCCCHHHHHHHHHHhC
Confidence 4556678999999887664 343 35588888887776544
No 412
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.42 E-value=2.8 Score=40.20 Aligned_cols=70 Identities=13% Similarity=0.112 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369 274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 352 (426)
Q Consensus 274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~ 352 (426)
.+++...++++.+.+.|++.|-+. .-+| ...+.|+.+++.+|+..|+...=-|. .-+-.|+++||+++=+
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEit----l~~~-~~~~~I~~l~~~~p~~~IGAGTVl~~----~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVT----LRTP-AALEAIRLIAKEVPEALIGAGTVLNP----EQLAQAIEAGAQFIVS 93 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe----cCCc-cHHHHHHHHHHHCCCCEEEEeeccCH----HHHHHHHHcCCCEEEC
Confidence 478999999999999999999987 4556 56677899999999877888666555 6678899999997743
No 413
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=88.41 E-value=27 Score=36.94 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=82.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc---cccccCHHHHHHHhHhcCCC-cEE--EEeCC---hhhHHHHHHcC
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKW---VPQLADARDVMEAVRDLEGA-RLP--VLTPN---LKGFEAAIAAG 214 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~---~p~~~D~~~v~~~i~~~~~~-~l~--~l~~~---~~di~~a~~~G 214 (426)
..+.+..++-++.|.+.|++.|-+....-..+ ++...+..++++.+..+++. ++. ..-|. .+-++...+++
T Consensus 175 sr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~P~~i~~ell~~l~~~~ 254 (439)
T PRK14328 175 SRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEIDGLERIRFMTSHPKDLSDDLIEAIADCD 254 (439)
T ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhcCCCcEEEEecCChhhcCHHHHHHHHhCC
Confidence 46788888888889889999887753211001 11112345566666554443 232 22232 34456555665
Q ss_pred --CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369 215 --AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (426)
Q Consensus 215 --v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~ 289 (426)
...+++.+ +.|+.-++. +|+.. ..+.+.++++.+++. ++.+.++++ +|.|..+ .+.+.+.++.+.++
T Consensus 255 ~~~~~l~iglQSgsd~vLk~-M~R~~--~~~~~~~~i~~lr~~~~~i~i~~d~I--vG~PgET---~ed~~~tl~~i~~l 326 (439)
T PRK14328 255 KVCEHIHLPVQSGSNRILKK-MNRHY--TREYYLELVEKIKSNIPDVAITTDII--VGFPGET---EEDFEETLDLVKEV 326 (439)
T ss_pred CcCceeeeCCCcCCHHHHHh-CCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEE--EECCCCC---HHHHHHHHHHHHhc
Confidence 67788875 556655443 55421 133445666677776 555655555 6778764 56666667667777
Q ss_pred CCCEE
Q 014369 290 GCFEI 294 (426)
Q Consensus 290 Gad~I 294 (426)
+.+.+
T Consensus 327 ~~~~~ 331 (439)
T PRK14328 327 RYDSA 331 (439)
T ss_pred CCCcc
Confidence 65533
No 414
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=88.39 E-value=26 Score=34.12 Aligned_cols=139 Identities=16% Similarity=0.105 Sum_probs=78.1
Q ss_pred ChhhHHHH---HHcCCCEEEEeccCChHH-HhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH
Q 014369 203 NLKGFEAA---IAAGAKEVAIFASASEAF-SKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK 278 (426)
Q Consensus 203 ~~~di~~a---~~~Gv~~V~i~~~~Sd~~-~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~ 278 (426)
+.+++..+ ++.+++.|-|-++..... .+...|...=+-.+.+.++++.+++.+.+|.+-+-.- .+...
T Consensus 78 ~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~--------~~~~~ 149 (231)
T TIGR00736 78 DLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGN--------CIPLD 149 (231)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCC--------CCcch
Confidence 45554333 334778777755433221 1112222222234566777888887787776544311 13346
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369 279 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 353 (426)
Q Consensus 279 l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S 353 (426)
..++++.+.++|++.|.+-... ...|.--.+.|+.+++.++.++|-- -++- ....-++..+++||+.|-.+
T Consensus 150 ~~~~a~~l~~aGad~i~Vd~~~-~g~~~a~~~~I~~i~~~~~~ipIIg--NGgI-~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 150 ELIDALNLVDDGFDGIHVDAMY-PGKPYADMDLLKILSEEFNDKIIIG--NNSI-DDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred HHHHHHHHHHcCCCEEEEeeCC-CCCchhhHHHHHHHHHhcCCCcEEE--ECCc-CCHHHHHHHHHhCCCeEEEc
Confidence 7789999999999999883211 1123235677888888774223222 1111 22356677777899987554
No 415
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=88.36 E-value=27 Score=34.23 Aligned_cols=191 Identities=21% Similarity=0.266 Sum_probs=109.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcccccc--CHHHHHHHhHh-cC-CCcEEEEe--CCh----hhHHHHHHc
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLA--DARDVMEAVRD-LE-GARLPVLT--PNL----KGFEAAIAA 213 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~--D~~~v~~~i~~-~~-~~~l~~l~--~~~----~di~~a~~~ 213 (426)
.++.+.-.++++.|.+.|++.|=+.-.... .+.+. +..++++.+.+ .. ++.+.+-+ .+. +-.+.|.+.
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE--~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~ 91 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGE--APTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEA 91 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcc--cccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHc
Confidence 578888899999999999999876432211 11222 22333333332 22 34443333 232 234566788
Q ss_pred CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--CCCCHHHHHHHHHHHHhCCC
Q 014369 214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--GAIPPSKVAYVAKELHDMGC 291 (426)
Q Consensus 214 Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--~r~~~~~l~~~~~~l~~~Ga 291 (426)
|++.|.+..+.- +..+.++.++.+.++++. -++++..|- .|.. ...+++.+.+++ + ..
T Consensus 92 Gad~v~v~pP~y-------~~~~~~~~~~~~~~ia~~---~~~pi~iYn-----~P~~tg~~l~~~~~~~L~----~-~~ 151 (281)
T cd00408 92 GADGVLVVPPYY-------NKPSQEGIVAHFKAVADA---SDLPVILYN-----IPGRTGVDLSPETIARLA----E-HP 151 (281)
T ss_pred CCCEEEECCCcC-------CCCCHHHHHHHHHHHHhc---CCCCEEEEE-----CccccCCCCCHHHHHHHh----c-CC
Confidence 999998875521 224566777766666654 466665432 3442 345677666655 3 45
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCccc
Q 014369 292 FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVA 371 (426)
Q Consensus 292 d~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~ 371 (426)
..+.++||. ....++.++++.+ +. .+.+-.=+| ...+.++..|++ +++.| .+|.-
T Consensus 152 ~v~giK~s~--~d~~~~~~~~~~~----~~-~~~v~~G~d-----~~~~~~l~~G~~---G~i~~----------~~n~~ 206 (281)
T cd00408 152 NIVGIKDSS--GDLDRLTRLIALL----GP-DFAVLSGDD-----DLLLPALALGAD---GAISG----------AANVA 206 (281)
T ss_pred CEEEEEeCC--CCHHHHHHHHHhc----CC-CeEEEEcch-----HHHHHHHHcCCC---EEEeh----------HHhhC
Confidence 799999997 3566666665443 32 244432222 566778889985 34443 34566
Q ss_pred HHHHHHHHHh
Q 014369 372 TEDVVYMLSG 381 (426)
Q Consensus 372 lEevv~~L~~ 381 (426)
-|.++...+.
T Consensus 207 p~~~~~~~~~ 216 (281)
T cd00408 207 PKLAVALYEA 216 (281)
T ss_pred HHHHHHHHHH
Confidence 6666665553
No 416
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=88.18 E-value=11 Score=39.17 Aligned_cols=105 Identities=15% Similarity=0.091 Sum_probs=66.3
Q ss_pred HHHHHHhHh-c---CCCcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCC--CHHHHHHHHHHHHHHHH
Q 014369 183 RDVMEAVRD-L---EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINC--SIEDSLVRYRAVAHAAK 252 (426)
Q Consensus 183 ~~v~~~i~~-~---~~~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~--s~~e~l~~~~~~v~~Ak 252 (426)
.++++.++. . ++..+++-+ | +.+.++...++|+++|.+.+..-+-..-..+|+ +.+ .+.++++.++
T Consensus 93 ~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~~~~----~~~~~i~~~~ 168 (394)
T PRK08898 93 DRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGA----EARAAIEIAA 168 (394)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCCCHH----HHHHHHHHHH
Confidence 444445542 2 335666655 3 246788889999999999984433333334444 333 4455666677
Q ss_pred hcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369 253 VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (426)
Q Consensus 253 ~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l 296 (426)
+.+..|.+.++ +|.|.. +.+.+.+-++.+.+++++.|++
T Consensus 169 ~~~~~v~~dlI--~GlPgq---t~~~~~~~l~~~~~l~p~~is~ 207 (394)
T PRK08898 169 KHFDNFNLDLM--YALPGQ---TLDEALADVETALAFGPPHLSL 207 (394)
T ss_pred HhCCceEEEEE--cCCCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence 76766766665 677754 4667777788889999987764
No 417
>PRK08444 hypothetical protein; Provisional
Probab=88.09 E-value=2 Score=44.28 Aligned_cols=75 Identities=12% Similarity=0.246 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC---CHHHHHHHHHHHHHhcCCceEEEEeCC-----------CcCcHHH
Q 014369 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVEKLAVHLHD-----------TYGQSLP 337 (426)
Q Consensus 272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~---~P~~v~~li~~l~~~~p~~~i~~H~HN-----------d~GlA~A 337 (426)
...+++.+.+.++.+.+.|+.+|.|. .|.- ..+.+.++++.+++.+|. +|.|- ..|+.+-
T Consensus 78 y~ls~eeI~~~a~~a~~~G~~ei~iv--~G~~p~~~~e~y~e~ir~Ik~~~p~----i~i~a~s~~Ei~~~a~~~g~~~~ 151 (353)
T PRK08444 78 YTMSHEEILEIVKNSVKRGIKEVHIV--SAHNPNYGYEWYLEIFKKIKEAYPN----LHVKAMTAAEVDFLSRKFGKSYE 151 (353)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEe--ccCCCCCCHHHHHHHHHHHHHHCCC----ceEeeCCHHHHHHHHHHcCCCHH
Confidence 45788999999999999999999998 2321 236788999999998885 34444 7888887
Q ss_pred HHHHHH-HcCCCEEee
Q 014369 338 NILISL-QMGISTVDC 352 (426)
Q Consensus 338 NaLaAl-~aGa~~VD~ 352 (426)
-.+..+ +||++.+..
T Consensus 152 e~l~~LkeAGl~~~~g 167 (353)
T PRK08444 152 EVLEDMLEYGVDSMPG 167 (353)
T ss_pred HHHHHHHHhCcccCCC
Confidence 777665 789886654
No 418
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=88.05 E-value=11 Score=40.16 Aligned_cols=107 Identities=15% Similarity=0.103 Sum_probs=68.6
Q ss_pred HHHHHHhHhc----CCCcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc
Q 014369 183 RDVMEAVRDL----EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL 254 (426)
Q Consensus 183 ~~v~~~i~~~----~~~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~ 254 (426)
..+++.+++. ++..+++=+ | +.+-++...++|+.+|.+.+..-+-.....+|+.. ..+.+.+.++.+++.
T Consensus 134 ~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~--~~~~~~~~i~~l~~~ 211 (449)
T PRK09058 134 ARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKD--DREEVLARLEELVAR 211 (449)
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCC--CHHHHHHHHHHHHhC
Confidence 4455555532 234555544 3 24567888899999999987443333333455421 234455677788888
Q ss_pred C-CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369 255 S-IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (426)
Q Consensus 255 G-~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l 296 (426)
| ..|.+.++ +|.|.. +.+.+.+-++.+.+++++.|.+
T Consensus 212 g~~~v~~DlI--~GlPgq---T~e~~~~~l~~~~~l~~~~is~ 249 (449)
T PRK09058 212 DRAAVVCDLI--FGLPGQ---TPEIWQQDLAIVRDLGLDGVDL 249 (449)
T ss_pred CCCcEEEEEE--eeCCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence 8 56776666 677754 4677777788888999887764
No 419
>PLN02417 dihydrodipicolinate synthase
Probab=88.03 E-value=3.9 Score=40.57 Aligned_cols=101 Identities=11% Similarity=0.155 Sum_probs=77.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHc
Q 014369 271 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQM 345 (426)
Q Consensus 271 ~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~a 345 (426)
.+..|.+-+.++++.+.+.|++.|.+.-|.| .++.++-.++++.+.+..+ ..+|-+|. +++.--++..+..|-++
T Consensus 16 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~ 95 (280)
T PLN02417 16 DGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAV 95 (280)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHc
Confidence 3678999999999999999999999999999 4567777888887777664 34566655 77888899999999999
Q ss_pred CCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh
Q 014369 346 GISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG 381 (426)
Q Consensus 346 Ga~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~ 381 (426)
||+.|=..- ||- ..++-|+++.+++.
T Consensus 96 Gadav~~~~------P~y----~~~~~~~i~~~f~~ 121 (280)
T PLN02417 96 GMHAALHIN------PYY----GKTSQEGLIKHFET 121 (280)
T ss_pred CCCEEEEcC------Ccc----CCCCHHHHHHHHHH
Confidence 999876543 221 12345777766653
No 420
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=88.03 E-value=3.7 Score=40.89 Aligned_cols=82 Identities=13% Similarity=0.132 Sum_probs=70.4
Q ss_pred CCCCHHHHHHHHHHHHh-CCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHc
Q 014369 272 GAIPPSKVAYVAKELHD-MGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQM 345 (426)
Q Consensus 272 ~r~~~~~l~~~~~~l~~-~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~a 345 (426)
+..|.+-+.++++.+.+ .|++.|.+.-|.|= ++.++-.++++.+.+..+ ..+|-+|. +++.--++..+..|.++
T Consensus 19 g~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~ 98 (293)
T PRK04147 19 GQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATEL 98 (293)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHc
Confidence 57899999999999999 99999999999885 677888888888888765 35677777 78888899999999999
Q ss_pred CCCEEeec
Q 014369 346 GISTVDCS 353 (426)
Q Consensus 346 Ga~~VD~S 353 (426)
||+.|=..
T Consensus 99 Gad~v~v~ 106 (293)
T PRK04147 99 GYDAISAV 106 (293)
T ss_pred CCCEEEEe
Confidence 99988655
No 421
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=88.02 E-value=3.7 Score=41.03 Aligned_cols=82 Identities=16% Similarity=0.084 Sum_probs=66.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG 346 (426)
Q Consensus 272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~aG 346 (426)
++.|.+.+.++++.+.+.|++.|.+.-|.|= ++-++-.++++.+.+... ..+|-+|. +++.--++..+..|.++|
T Consensus 16 g~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~G 95 (294)
T TIGR02313 16 GDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAG 95 (294)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcC
Confidence 6789999999999999999999999999995 455666777777776654 34666665 678888899999999999
Q ss_pred CCEEeec
Q 014369 347 ISTVDCS 353 (426)
Q Consensus 347 a~~VD~S 353 (426)
|+.|=..
T Consensus 96 ad~v~v~ 102 (294)
T TIGR02313 96 ADAAMVI 102 (294)
T ss_pred CCEEEEc
Confidence 9977544
No 422
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=88.02 E-value=22 Score=36.56 Aligned_cols=157 Identities=20% Similarity=0.143 Sum_probs=83.8
Q ss_pred HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEee--ecCCCCC-------CCCHH
Q 014369 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV--VGCPVEG-------AIPPS 277 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~--fg~pd~~-------r~~~~ 277 (426)
++...++|+..||+=+-+++.. .=.++ ++.+.+++++||++|++|-..+-+. +..|-.- ..+.+
T Consensus 30 ~~ilk~~G~N~vRlRvwv~P~~---~g~~~----~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~ 102 (332)
T PF07745_consen 30 FQILKDHGVNAVRLRVWVNPYD---GGYND----LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFD 102 (332)
T ss_dssp HHHHHHTT--EEEEEE-SS-TT---TTTTS----HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHH
T ss_pred HHHHHhcCCCeEEEEeccCCcc---cccCC----HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHH
Confidence 4566778998766665555432 11223 5566678889999999988655532 1111110 01233
Q ss_pred --------HHHHHHHHHHhCCC--CEEEEcCC--CCCCCH-------HHHHHHH----HHHHHhcCCceEEEEeCCCcCc
Q 014369 278 --------KVAYVAKELHDMGC--FEISLGDT--IGVGTP-------GTVVPML----EAVMAVVPVEKLAVHLHDTYGQ 334 (426)
Q Consensus 278 --------~l~~~~~~l~~~Ga--d~I~l~DT--~G~~~P-------~~v~~li----~~l~~~~p~~~i~~H~HNd~Gl 334 (426)
+..++.++|.++|+ +.|.|..= .|.+-| ..+..|+ +++|+..|.++|.+|.-+-...
T Consensus 103 ~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~ 182 (332)
T PF07745_consen 103 QLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDN 182 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCch
Confidence 44456778888895 68888753 355553 4556664 6777777888999999876655
Q ss_pred HHHHH-H-HHHHcC--CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 014369 335 SLPNI-L-ISLQMG--ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS 380 (426)
Q Consensus 335 A~ANa-L-aAl~aG--a~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~ 380 (426)
+.... . ....+| .|+|=.|.... - .| +++.+...|+
T Consensus 183 ~~~~~~f~~l~~~g~d~DviGlSyYP~-----w---~~--~l~~l~~~l~ 222 (332)
T PF07745_consen 183 DLYRWFFDNLKAAGVDFDVIGLSYYPF-----W---HG--TLEDLKNNLN 222 (332)
T ss_dssp HHHHHHHHHHHHTTGG-SEEEEEE-ST-----T---ST---HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceEEEecCCC-----C---cc--hHHHHHHHHH
Confidence 22221 1 122345 34555555542 1 23 5666666554
No 423
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=87.99 E-value=8.7 Score=38.42 Aligned_cols=90 Identities=14% Similarity=0.218 Sum_probs=50.8
Q ss_pred ChhhHH----HHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHH
Q 014369 203 NLKGFE----AAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPS 277 (426)
Q Consensus 203 ~~~di~----~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~ 277 (426)
+.+++. .+.+.|++.|.+=++.-....+...|....+..+.+.++++.+|+. .++|.+-+. | +.+
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~-----~-----~~~ 180 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLT-----P-----NIT 180 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECC-----C-----Cch
Confidence 555543 3344688877765443222122222222222234455666666553 466654332 2 234
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCC
Q 014369 278 KVAYVAKELHDMGCFEISLGDTIGV 302 (426)
Q Consensus 278 ~l~~~~~~l~~~Gad~I~l~DT~G~ 302 (426)
.+.++++.+.++|++.|.+.+|...
T Consensus 181 ~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 181 DIREIARAAKEGGADGVSAINTVNS 205 (299)
T ss_pred hHHHHHHHHHHcCCCEEEEeccccc
Confidence 6788999999999999998877643
No 424
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=87.97 E-value=19 Score=37.39 Aligned_cols=142 Identities=21% Similarity=0.124 Sum_probs=85.7
Q ss_pred HHHHHcCCCEEEEecc--------CChHH--HhhhcCCCHHHHHHHHHHHHHHHHhc-C--CcEEEEEEeeecCCCCCCC
Q 014369 208 EAAIAAGAKEVAIFAS--------ASEAF--SKSNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVGCPVEGAI 274 (426)
Q Consensus 208 ~~a~~~Gv~~V~i~~~--------~Sd~~--~~~~~~~s~~e~l~~~~~~v~~Ak~~-G--~~v~~~v~~~fg~pd~~r~ 274 (426)
++|.++|.|.|-|... .|+.. +...+|-|.|+=+....++++.+|+. | ..|.+-++..-. .+..-.
T Consensus 156 ~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~-~~~~g~ 234 (363)
T COG1902 156 RRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDF-FDGGGL 234 (363)
T ss_pred HHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECcccc-CCCCCC
Confidence 5677899998887632 22222 23346778887777777777777764 3 335555654311 122246
Q ss_pred CHHHHHHHHHHHHhCC-CCEEEEcCCCC----CCC---HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC
Q 014369 275 PPSKVAYVAKELHDMG-CFEISLGDTIG----VGT---PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG 346 (426)
Q Consensus 275 ~~~~l~~~~~~l~~~G-ad~I~l~DT~G----~~~---P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG 346 (426)
+++...++++.+.+.| +|.|.+.--.- ... |.-...+.+.++......-+.+-. ......+..+++.|
T Consensus 235 ~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~----i~~~~~Ae~~l~~g 310 (363)
T COG1902 235 TIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGG----INDPEQAEEILASG 310 (363)
T ss_pred CHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCC----CCCHHHHHHHHHcC
Confidence 7899999999999999 68776643221 111 333445566666654321133222 44566778889998
Q ss_pred -CCEEeecccCCCC
Q 014369 347 -ISTVDCSVAGLGG 359 (426)
Q Consensus 347 -a~~VD~Sv~GlGe 359 (426)
||.| |+|.
T Consensus 311 ~aDlV-----a~gR 319 (363)
T COG1902 311 RADLV-----AMGR 319 (363)
T ss_pred CCCEE-----Eech
Confidence 6655 6665
No 425
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=87.95 E-value=15 Score=35.69 Aligned_cols=75 Identities=23% Similarity=0.257 Sum_probs=50.9
Q ss_pred CEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 014369 216 KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS 295 (426)
Q Consensus 216 ~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~ 295 (426)
..+.+++|..+. +....++-+..+..+.+. ..+|+. .+.+.+.+.++.+.+.|+|.|.
T Consensus 126 ~~vGVivP~~eQ----------------~~~~~~kW~~l~~~~~~a----~asPy~--~~~~~l~~Aa~~L~~~gadlIv 183 (221)
T PF07302_consen 126 HQVGVIVPLPEQ----------------IAQQAEKWQPLGNPVVVA----AASPYE--GDEEELAAAARELAEQGADLIV 183 (221)
T ss_pred CeEEEEecCHHH----------------HHHHHHHHHhcCCCeEEE----EeCCCC--CCHHHHHHHHHHHHhcCCCEEE
Confidence 789999886542 223444556667666632 235664 3688999999999999999876
Q ss_pred EcCCCCCCCHHHHHHHHHHH
Q 014369 296 LGDTIGVGTPGTVVPMLEAV 315 (426)
Q Consensus 296 l~DT~G~~~P~~v~~li~~l 315 (426)
+ |-.|+. .+.+++++..
T Consensus 184 L-DCmGYt--~~~r~~~~~~ 200 (221)
T PF07302_consen 184 L-DCMGYT--QEMRDIVQRA 200 (221)
T ss_pred E-ECCCCC--HHHHHHHHHH
Confidence 6 888875 3455555543
No 426
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=87.95 E-value=30 Score=34.37 Aligned_cols=189 Identities=13% Similarity=0.092 Sum_probs=108.0
Q ss_pred CCCHHHHHHHHHHHHh-CCCCeEEEecCCCCCccccccCHHHHHHHhH----hcCC-CcEEEEe--CCh----hhHHHHH
Q 014369 144 TVPTGVKVELIRRLVS-SGLPVVEATSFVSPKWVPQLADARDVMEAVR----DLEG-ARLPVLT--PNL----KGFEAAI 211 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~-~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~----~~~~-~~l~~l~--~~~----~di~~a~ 211 (426)
.++.+.-.++++.|.+ .|++-|=+.-.... .+.|. .+|..+.++ ...+ +.+.+-+ .+. +-.+.|.
T Consensus 20 ~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE--~~~Ls-~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~ 96 (293)
T PRK04147 20 QIDEQGLRRLVRFNIEKQGIDGLYVGGSTGE--AFLLS-TEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYAT 96 (293)
T ss_pred CcCHHHHHHHHHHHHhcCCCCEEEECCCccc--cccCC-HHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHH
Confidence 4688888999999999 99998877432211 01222 233333333 2222 3333322 232 3346677
Q ss_pred HcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--CCCCHHHHHHHHHHHHhC
Q 014369 212 AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--GAIPPSKVAYVAKELHDM 289 (426)
Q Consensus 212 ~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--~r~~~~~l~~~~~~l~~~ 289 (426)
++|++.+-+..|.- +..+.++.++.+.++++. .++++.. +..|.. ...+++.+.+++ +.
T Consensus 97 ~~Gad~v~v~~P~y-------~~~~~~~l~~~f~~va~a---~~lPv~i-----Yn~P~~tg~~l~~~~l~~L~----~~ 157 (293)
T PRK04147 97 ELGYDAISAVTPFY-------YPFSFEEICDYYREIIDS---ADNPMIV-----YNIPALTGVNLSLDQFNELF----TL 157 (293)
T ss_pred HcCCCEEEEeCCcC-------CCCCHHHHHHHHHHHHHh---CCCCEEE-----EeCchhhccCCCHHHHHHHh----cC
Confidence 89999998876531 233556666666666554 3566653 223532 245677666655 32
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCc
Q 014369 290 GCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGN 369 (426)
Q Consensus 290 Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGN 369 (426)
...+.++|+.|- ..++.+++ +..++. ..+-+++ ...+.++.+|++.+ +. ..+|
T Consensus 158 -pnvvgiK~s~~d--~~~~~~~~----~~~~~~-~v~~G~d------~~~~~~l~~G~~G~---is----------~~~n 210 (293)
T PRK04147 158 -PKVIGVKQTAGD--LYQLERIR----KAFPDK-LIYNGFD------EMFASGLLAGADGA---IG----------STYN 210 (293)
T ss_pred -CCEEEEEeCCCC--HHHHHHHH----HhCCCC-EEEEeeh------HHHHHHHHcCCCEE---Ee----------chhh
Confidence 478999999773 45554443 344542 3455554 33556778898644 33 2456
Q ss_pred ccHHHHHHHHHh
Q 014369 370 VATEDVVYMLSG 381 (426)
Q Consensus 370 a~lEevv~~L~~ 381 (426)
.-.|.++.+.+.
T Consensus 211 ~~p~~~~~l~~~ 222 (293)
T PRK04147 211 VNGWRARQIFEA 222 (293)
T ss_pred hCHHHHHHHHHH
Confidence 666776666653
No 427
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=87.94 E-value=11 Score=36.82 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=56.4
Q ss_pred hHHHHH-HcCCCEEEEeccCChHHHhhhcCC----CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC-CCCC----
Q 014369 206 GFEAAI-AAGAKEVAIFASASEAFSKSNINC----SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-GAIP---- 275 (426)
Q Consensus 206 di~~a~-~~Gv~~V~i~~~~Sd~~~~~~~~~----s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~-~r~~---- 275 (426)
.++.++ +.|+....+..+... ..+++. .+++.++.+++.++.|+++|.+... +. +.+.. ...+
T Consensus 61 ~l~~~l~~~gl~i~~~~~~~~~---~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~-~~---~~~~~~~~~~~~~~ 133 (283)
T PRK13209 61 ALVNALVETGFRVNSMCLSAHR---RFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQ-LA---GYDVYYEQANNETR 133 (283)
T ss_pred HHHHHHHHcCCceeEEeccccc---ccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE-EC---CccccccccHHHHH
Confidence 344444 678887665432211 011111 2567889999999999999998542 21 11110 1111
Q ss_pred ---HHHHHHHHHHHHhCCCCEEEEc--CCCCCCCHHHHHHHHHHH
Q 014369 276 ---PSKVAYVAKELHDMGCFEISLG--DTIGVGTPGTVVPMLEAV 315 (426)
Q Consensus 276 ---~~~l~~~~~~l~~~Gad~I~l~--DT~G~~~P~~v~~li~~l 315 (426)
.+.+.++++.+.+.|+. |.+- +..-..++.++.++++.+
T Consensus 134 ~~~~~~l~~l~~~A~~~GV~-i~iE~~~~~~~~~~~~~~~ll~~v 177 (283)
T PRK13209 134 RRFIDGLKESVELASRASVT-LAFEIMDTPFMNSISKALGYAHYL 177 (283)
T ss_pred HHHHHHHHHHHHHHHHhCCE-EEEeecCCcccCCHHHHHHHHHHh
Confidence 23456667777778873 4442 233344677777776665
No 428
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=87.94 E-value=12 Score=36.79 Aligned_cols=99 Identities=12% Similarity=0.062 Sum_probs=52.3
Q ss_pred HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l 286 (426)
++.+.+.-.+.+-+++.++.. ..+...+.++.|++.|..... +..|.-...+.+.+.++.+.+
T Consensus 59 ~~~~~~~~~~~~~vi~gv~~~------------~~~~~~~~a~~a~~~G~d~v~-----~~~P~~~~~~~~~l~~~~~~i 121 (284)
T cd00950 59 IEAVVEAVNGRVPVIAGTGSN------------NTAEAIELTKRAEKAGADAAL-----VVTPYYNKPSQEGLYAHFKAI 121 (284)
T ss_pred HHHHHHHhCCCCcEEeccCCc------------cHHHHHHHHHHHHHcCCCEEE-----EcccccCCCCHHHHHHHHHHH
Confidence 444555433455566555441 234445667788888887432 224544455677777777776
Q ss_pred HhC-CCC--EEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEE
Q 014369 287 HDM-GCF--EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVH 327 (426)
Q Consensus 287 ~~~-Gad--~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H 327 (426)
.+. +.. .-.++...|...+.+ +++.|.+ .|.+ +++.
T Consensus 122 a~~~~~pi~lYn~P~~~g~~ls~~---~~~~L~~-~p~v-~giK 160 (284)
T cd00950 122 AEATDLPVILYNVPGRTGVNIEPE---TVLRLAE-HPNI-VGIK 160 (284)
T ss_pred HhcCCCCEEEEEChhHhCCCCCHH---HHHHHhc-CCCE-EEEE
Confidence 664 433 223455566544422 3333333 3653 5554
No 429
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=87.89 E-value=35 Score=35.45 Aligned_cols=178 Identities=17% Similarity=0.178 Sum_probs=94.7
Q ss_pred HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEEEe-CChhhHHHHHHcCCCEEEEeccCChHH
Q 014369 151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAF 228 (426)
Q Consensus 151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~ 228 (426)
.++++.|.+.|++.+.+-. ..|.....+. ++...+..+. .....++.+++.++..+.+.
T Consensus 67 ~~ia~~l~~~G~~g~~vas------------~~Ea~~lr~aGi~~~~I~~l~~~~~~el~~~v~~~~~~i~V~------- 127 (382)
T cd06811 67 PFLARALLEAGIPGAVAVD------------FKEARALHEAGLPLGHVGHLVQIPRHQVPAVLAMRPEVITVY------- 127 (382)
T ss_pred HHHHHHHHHcCCCeEeEec------------HHHHHHHHHcCCCHHhEEEccCCCHHHHHHHHHcCCCEEEEC-------
Confidence 5799999999998777753 2344333332 2222333222 24678888888875544443
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCC-----CCCCCHHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 014369 229 SKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-----EGAIPPSKVAYVAKELHDM-GCFEISLGDTIGV 302 (426)
Q Consensus 229 ~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd-----~~r~~~~~l~~~~~~l~~~-Gad~I~l~DT~G~ 302 (426)
.++.+..+.+.|+++|..+.+.|..--|... .+-.+++.+.++++.+.++ +.....| =+.+.
T Consensus 128 -----------s~~~l~~L~~~A~~~g~~~~V~LrVdtg~~ri~~g~~~G~~~~e~~~~~~~i~~l~~l~l~Gi-thf~~ 195 (382)
T cd06811 128 -----------SLEKAREISDAAVELGRVQDVLLRVYGDEDTLYPGQEGGFPLEELPAVLAAIKALPGIRIAGL-TSFPC 195 (382)
T ss_pred -----------CHHHHHHHHHHHHHcCCceEEEEEEECCCCccccCccceecHHHHHHHHHHHHcCCCcEEEeE-cccch
Confidence 1445556666777788776655553211110 0024677788888777664 4444444 22222
Q ss_pred C---------CHHHHHHHHHHHHHhcC---CceEEEEeCCCcCcHHHHHH-HHHHcCCCEEeecccCCCCCCC
Q 014369 303 G---------TPGTVVPMLEAVMAVVP---VEKLAVHLHDTYGQSLPNIL-ISLQMGISTVDCSVAGLGGCPY 362 (426)
Q Consensus 303 ~---------~P~~v~~li~~l~~~~p---~~~i~~H~HNd~GlA~ANaL-aAl~aGa~~VD~Sv~GlGecP~ 362 (426)
. .|.+..+.+..+++.+. .....+|+. |...+.++ ...+.|.+.+...+.=+|--|+
T Consensus 196 ~~~d~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~is~G---ga~ss~~l~~~~~~~~t~vRpG~~LyG~~p~ 265 (382)
T cd06811 196 FLYDEEQGDIAPTPNLFTLLKAKELLEKRGIEILQLNAP---SATSCATLPLLAEYGVTHGEPGHALTGTTPL 265 (382)
T ss_pred hhcccCcccccHHHHHHHHHHHHHHHHHCCCCCeEEccC---CCcchhhHHHHHhCCCcEEeccEEEecCcch
Confidence 1 13322222233333332 111223433 33334444 5567899998877777776454
No 430
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=87.88 E-value=24 Score=36.56 Aligned_cols=96 Identities=17% Similarity=0.060 Sum_probs=61.7
Q ss_pred CcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCC
Q 014369 195 ARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV 270 (426)
Q Consensus 195 ~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd 270 (426)
+.+++=+ | +.+.++...++|+.+|.+.+..-+-..-..+|+. ...+.+.++++.+++.+..|.+.++ +|.|.
T Consensus 91 ~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~--~~~~~~~~ai~~~~~~~~~v~~dli--~GlPg 166 (380)
T PRK09057 91 IEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRL--HSVAEALAAIDLAREIFPRVSFDLI--YARPG 166 (380)
T ss_pred ccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHhCccEEEEee--cCCCC
Confidence 4555544 3 2467888889999999998743333333344442 1233444666777888877877776 67775
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369 271 EGAIPPSKVAYVAKELHDMGCFEISLG 297 (426)
Q Consensus 271 ~~r~~~~~l~~~~~~l~~~Gad~I~l~ 297 (426)
. +.+.+.+-++.+.+.+++.|.+-
T Consensus 167 q---t~~~~~~~l~~~~~l~p~~is~y 190 (380)
T PRK09057 167 Q---TLAAWRAELKEALSLAADHLSLY 190 (380)
T ss_pred C---CHHHHHHHHHHHHhcCCCeEEee
Confidence 4 45566666777778899877765
No 431
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=87.83 E-value=17 Score=36.18 Aligned_cols=138 Identities=17% Similarity=0.237 Sum_probs=79.6
Q ss_pred CCcEEEEe-CChhhHHHHHHcCCCEEEEeccCChHHHhhhc------CCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEee
Q 014369 194 GARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNI------NCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCV 265 (426)
Q Consensus 194 ~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~------~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~ 265 (426)
+-++.+++ .+.-..+.+.++|++.|.+..+ .....+ ..|.++.+..++.+.+.+ ... |.+.
T Consensus 14 g~~i~~~tayD~~sArl~e~aG~d~i~vGds----~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~---~~p~vvaD---- 82 (264)
T PRK00311 14 GEKIVMLTAYDYPFAKLFDEAGVDVILVGDS----LGMVVLGYDSTLPVTLDDMIYHTKAVARGA---PRALVVAD---- 82 (264)
T ss_pred CCCEEEEeCCCHHHHHHHHHcCCCEEEECHH----HHHHHcCCCCCCCcCHHHHHHHHHHHHhcC---CCCcEEEe----
Confidence 34555554 3455556777899999865323 222223 347788887776655443 222 3222
Q ss_pred ecCCCCC-CCCHHHHHHH-HHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-cCCc-eEEE--EeCCCcC------
Q 014369 266 VGCPVEG-AIPPSKVAYV-AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV-VPVE-KLAV--HLHDTYG------ 333 (426)
Q Consensus 266 fg~pd~~-r~~~~~l~~~-~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~-~p~~-~i~~--H~HNd~G------ 333 (426)
.|+.+ ..+++...+. .+.+.++|++.|.|-|. .++.+.|+++.+. +|.. +|++ ..++.+|
T Consensus 83 --~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~g 154 (264)
T PRK00311 83 --MPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGG------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQG 154 (264)
T ss_pred --CCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCc------HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeec
Confidence 23333 3577775554 44455599999999996 3666777777754 3421 2222 3333333
Q ss_pred -------cHHHHHHHHHHcCCCEE
Q 014369 334 -------QSLPNILISLQMGISTV 350 (426)
Q Consensus 334 -------lA~ANaLaAl~aGa~~V 350 (426)
-++.-+.+-.+|||+.|
T Consensus 155 rt~~~a~~~i~ra~a~~eAGA~~i 178 (264)
T PRK00311 155 RDEEAAEKLLEDAKALEEAGAFAL 178 (264)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEE
Confidence 23555666679999865
No 432
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=87.80 E-value=20 Score=35.71 Aligned_cols=72 Identities=11% Similarity=-0.093 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEEEEcCCCCCC-CHHHHHHHHHHHHHhcCC
Q 014369 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM-GCFEISLGDTIGVG-TPGTVVPMLEAVMAVVPV 321 (426)
Q Consensus 244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~-Gad~I~l~DT~G~~-~P~~v~~li~~l~~~~p~ 321 (426)
..+.++.|++.|.... + +-.|.-.+.+.+.+.+..+.+.++ +...+.+- ..|.- .|+. +..|.+++|.
T Consensus 88 ai~~a~~a~~~Gadav---~--~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn-~~g~~l~~~~----~~~La~~~~n 157 (296)
T TIGR03249 88 AIEIARLAEKAGADGY---L--LLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ-RDNAVLNADT----LERLADRCPN 157 (296)
T ss_pred HHHHHHHHHHhCCCEE---E--ECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe-CCCCCCCHHH----HHHHHhhCCC
Confidence 3455667777777643 1 123444445566666666665553 34444343 44543 3333 3344444554
Q ss_pred ceEEE
Q 014369 322 EKLAV 326 (426)
Q Consensus 322 ~~i~~ 326 (426)
+ +++
T Consensus 158 v-vgi 161 (296)
T TIGR03249 158 L-VGF 161 (296)
T ss_pred E-EEE
Confidence 3 444
No 433
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=87.77 E-value=31 Score=35.06 Aligned_cols=158 Identities=12% Similarity=0.117 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHHh-CCCCeEEEecCCCCCccccc-cC--HHHHHHHhHhcCC---CcE----EEEeCCh---hhHHH
Q 014369 144 TVPTGVKVELIRRLVS-SGLPVVEATSFVSPKWVPQL-AD--ARDVMEAVRDLEG---ARL----PVLTPNL---KGFEA 209 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~-~Gv~~IEvG~~~s~~~~p~~-~D--~~~v~~~i~~~~~---~~l----~~l~~~~---~di~~ 209 (426)
.++.++-.+++..+.+ .||..|=++- .. |-+ .| .+++++.++.++. .++ .++.|++ +-++.
T Consensus 124 ~~~~~~~~~~i~~i~~~~~i~~VvltG-GE----PL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~ 198 (321)
T TIGR03821 124 QPNKAQWKEALEYIAQHPEINEVILSG-GD----PLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDL 198 (321)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEEeC-cc----cccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHH
Confidence 3566676777777764 4887766643 12 211 23 3455555554443 222 2344442 33455
Q ss_pred HHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369 210 AIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (426)
Q Consensus 210 a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~ 289 (426)
..+.|...+.+ ++.+-. .|.-+.+.++++.+++.|+.+.......- .-..+++.+.++++.+.++
T Consensus 199 L~~~~~~~~~~-~h~dh~----------~Ei~d~~~~ai~~L~~~Gi~v~~qtvllk----giNDn~~~l~~L~~~l~~~ 263 (321)
T TIGR03821 199 LANSRLQTVLV-VHINHA----------NEIDAEVADALAKLRNAGITLLNQSVLLR----GVNDNADTLAALSERLFDA 263 (321)
T ss_pred HHhcCCcEEEE-eeCCCh----------HhCcHHHHHHHHHHHHcCCEEEecceeeC----CCCCCHHHHHHHHHHHHHc
Confidence 55677765532 222211 12234466788999999998753222110 1123688999999999999
Q ss_pred CCCEEEE--cCCCCC-----CCHHHHHHHHHHHHHhcCC
Q 014369 290 GCFEISL--GDTIGV-----GTPGTVVPMLEAVMAVVPV 321 (426)
Q Consensus 290 Gad~I~l--~DT~G~-----~~P~~v~~li~~l~~~~p~ 321 (426)
|+...++ .|-+|. ..+++..++++.+++..++
T Consensus 264 gv~pyyl~~~~p~gg~~~f~v~~~~~~~i~~~l~~~~sG 302 (321)
T TIGR03821 264 GVLPYYLHLLDKVQGAAHFDVDDERARALMAELLARLPG 302 (321)
T ss_pred CCeeCcccccCCCCCcccccCCHHHHHHHHHHHHHhCCC
Confidence 9875544 555553 4678899999999998864
No 434
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=87.76 E-value=4.1 Score=40.32 Aligned_cols=83 Identities=11% Similarity=0.053 Sum_probs=66.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG 346 (426)
Q Consensus 272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~aG 346 (426)
+..|.+.+.++++.+.+.|++-|.+.-|+|= ++.++-.++++.+.+... ..+|-+|. +++.--++..+..|.++|
T Consensus 14 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G 93 (285)
T TIGR00674 14 GSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVG 93 (285)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999999884 566777777777777654 34566665 567778889999999999
Q ss_pred CCEEeecc
Q 014369 347 ISTVDCSV 354 (426)
Q Consensus 347 a~~VD~Sv 354 (426)
|+.|=..-
T Consensus 94 ad~v~v~p 101 (285)
T TIGR00674 94 ADGFLVVT 101 (285)
T ss_pred CCEEEEcC
Confidence 99886654
No 435
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=87.76 E-value=27 Score=34.22 Aligned_cols=82 Identities=11% Similarity=-0.047 Sum_probs=51.0
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC----ChhhHHH
Q 014369 134 PRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP----NLKGFEA 209 (426)
Q Consensus 134 LRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----~~~di~~ 209 (426)
|++|.+..|..+.... -.+++.+..+|+|.+-+-.=..+ -|.+++...++......+..++| ....+++
T Consensus 7 l~~g~~~~G~~~~~~s-p~~~e~~a~~G~D~v~iD~EHg~------~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r 79 (249)
T TIGR03239 7 LLARETLIGCWSALGN-PITTEVLGLAGFDWLLLDGEHAP------NDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKR 79 (249)
T ss_pred HHcCCceEEEEEcCCC-cHHHHHHHhcCCCEEEEecccCC------CCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHH
Confidence 5566665554322222 46788889999998877532221 24556666666544444444553 3567899
Q ss_pred HHHcCCCEEEEec
Q 014369 210 AIAAGAKEVAIFA 222 (426)
Q Consensus 210 a~~~Gv~~V~i~~ 222 (426)
+++.|++.|.+..
T Consensus 80 ~LD~Ga~gIivP~ 92 (249)
T TIGR03239 80 LLDIGFYNFLIPF 92 (249)
T ss_pred HhcCCCCEEEecC
Confidence 9999999887753
No 436
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=87.73 E-value=12 Score=37.13 Aligned_cols=103 Identities=11% Similarity=0.022 Sum_probs=55.6
Q ss_pred HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l 286 (426)
++.+.+.-...+.+++.++. ...+...+.++.|++.|..... ...|.-.+.+++.+.+..+.+
T Consensus 57 ~~~~~~~~~~~~~vi~gv~~------------~s~~~~i~~a~~a~~~Gad~v~-----v~pP~y~~~~~~~i~~~~~~i 119 (285)
T TIGR00674 57 IEFVVDLVNGRVPVIAGTGS------------NATEEAISLTKFAEDVGADGFL-----VVTPYYNKPTQEGLYQHFKAI 119 (285)
T ss_pred HHHHHHHhCCCCeEEEeCCC------------ccHHHHHHHHHHHHHcCCCEEE-----EcCCcCCCCCHHHHHHHHHHH
Confidence 44555443345556655544 1244455677788888987432 224555556677777777766
Q ss_pred HhC-CCC--EEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEE-EeCCC
Q 014369 287 HDM-GCF--EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV-HLHDT 331 (426)
Q Consensus 287 ~~~-Gad--~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~-H~HNd 331 (426)
.+. +.. .-+++...|...+.+ +++.|.+ .|.+ +++ ..+.|
T Consensus 120 ~~~~~~pi~lYn~P~~tg~~l~~~---~l~~L~~-~~~v-~giK~s~~d 163 (285)
T TIGR00674 120 AEEVDLPIILYNVPSRTGVSLYPE---TVKRLAE-EPNI-VAIKEATGN 163 (285)
T ss_pred HhcCCCCEEEEECcHHhcCCCCHH---HHHHHHc-CCCE-EEEEeCCCC
Confidence 553 333 334555667555433 3334433 4542 565 44444
No 437
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=87.70 E-value=12 Score=39.80 Aligned_cols=144 Identities=16% Similarity=0.215 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCC-C------CCcccc---ccCHHHHHHHhHhcCCCc-EEEEe--CC---hhhH
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFV-S------PKWVPQ---LADARDVMEAVRDLEGAR-LPVLT--PN---LKGF 207 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~-s------~~~~p~---~~D~~~v~~~i~~~~~~~-l~~l~--~~---~~di 207 (426)
..+.+..++=++.|.+.|++.|-+.... . +...|. ..+..++++.+..+++.. +.... |. .+-+
T Consensus 176 sr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~Ll~~i~~~~~~~rir~~~~~p~~~~~eli 255 (448)
T PRK14333 176 SRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDLLYYIHDVEGIERIRFATSHPRYFTERLI 255 (448)
T ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHHHHHHHhcCCCeEEEECCCChhhhhHHHH
Confidence 3567777777788888899988664210 0 001111 124566666666555532 22212 32 2234
Q ss_pred HHHHHc--CCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369 208 EAAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYV 282 (426)
Q Consensus 208 ~~a~~~--Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~ 282 (426)
+...+. +...+++.+ +.|+--++ .+|+.. ..+.+.++++.+++. |+.+.++++ +|.|.. +.+.+.+.
T Consensus 256 ~~~~~~~~~~~~l~igiQSgsd~vLk-~m~R~~--t~e~~~~~i~~lr~~~p~i~i~~d~I--vGfPgE---T~edf~~t 327 (448)
T PRK14333 256 KACAELPKVCEHFHIPFQSGDNEILK-AMARGY--THEKYRRIIDKIREYMPDASISADAI--VGFPGE---TEAQFENT 327 (448)
T ss_pred HHHhcCCcccccccCCCccCCHHHHH-hcCCCC--CHHHHHHHHHHHHHhCCCcEEEeeEE--EECCCC---CHHHHHHH
Confidence 444454 467777765 44443333 344422 344556777788888 566666665 677765 46777777
Q ss_pred HHHHHhCCCCEEE
Q 014369 283 AKELHDMGCFEIS 295 (426)
Q Consensus 283 ~~~l~~~Gad~I~ 295 (426)
++.+.+.+.+.+.
T Consensus 328 l~~l~~~~~~~~~ 340 (448)
T PRK14333 328 LKLVEEIGFDQLN 340 (448)
T ss_pred HHHHHHcCCCEEe
Confidence 7777788876554
No 438
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=87.63 E-value=15 Score=37.85 Aligned_cols=129 Identities=17% Similarity=0.103 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHhC--CCCeEEEecCCCCCccccccCHHHHHHHhHh----cCCCcEEEE-eCChhhHHHHHHcCCCEE
Q 014369 146 PTGVKVELIRRLVSS--GLPVVEATSFVSPKWVPQLADARDVMEAVRD----LEGARLPVL-TPNLKGFEAAIAAGAKEV 218 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~--Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~----~~~~~l~~l-~~~~~di~~a~~~Gv~~V 218 (426)
..++ .+-++.|.++ |++.|-+-.-. ...+.+++.+++ .|+..+.+- +-+.++.+.++++|+|.|
T Consensus 105 ~~~d-~er~~~L~~a~~~~d~iviD~Ah--------Ghs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~i 175 (343)
T TIGR01305 105 SDND-LEKMTSILEAVPQLKFICLDVAN--------GYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIV 175 (343)
T ss_pred CHHH-HHHHHHHHhcCCCCCEEEEECCC--------CcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEE
Confidence 3444 5666777776 59988775311 122344444443 344443333 346789999999999999
Q ss_pred EEeccCChHHHhhhc-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369 219 AIFASASEAFSKSNI-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG 297 (426)
Q Consensus 219 ~i~~~~Sd~~~~~~~-~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~ 297 (426)
.+.+...-.+..... +... -.+..+.++++.|+..+.+|.+ |.+-... -+++|++. +||+.+-+.
T Consensus 176 kVgiGpGSicttR~~~Gvg~-pqltAv~~~a~aa~~~~v~VIa---------DGGIr~~---gDI~KALA-~GAd~VMlG 241 (343)
T TIGR01305 176 KVGIGPGSVCTTRTKTGVGY-PQLSAVIECADAAHGLKGHIIS---------DGGCTCP---GDVAKAFG-AGADFVMLG 241 (343)
T ss_pred EEcccCCCcccCceeCCCCc-CHHHHHHHHHHHhccCCCeEEE---------cCCcCch---hHHHHHHH-cCCCEEEEC
Confidence 988543333322222 2221 2577777888888888876642 4442222 34555554 999999887
No 439
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=87.63 E-value=21 Score=38.16 Aligned_cols=144 Identities=14% Similarity=0.099 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEec-----C-CCCCc--cccccCHHHHHHHhHhc-CCCcEE--EEeCC---hhhHHH
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATS-----F-VSPKW--VPQLADARDVMEAVRDL-EGARLP--VLTPN---LKGFEA 209 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~-----~-~s~~~--~p~~~D~~~v~~~i~~~-~~~~l~--~l~~~---~~di~~ 209 (426)
..+.+..++-++.|.+.|++.|-+.. + ..... .+...+..++++.+... ++.++. +..|. .+-++.
T Consensus 196 srs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~ 275 (467)
T PRK14329 196 SRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAEAVPDMRIRFSTSHPKDMTDDVLEV 275 (467)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHHHHHhcCCCcEEEEecCCcccCCHHHHHH
Confidence 56888888888899989998776531 1 11000 00112345556555432 333433 33332 334566
Q ss_pred HHHc--CCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369 210 AIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (426)
Q Consensus 210 a~~~--Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~ 284 (426)
..+. |...|++.+ +.|+..++ .+|+... .+.+.++++.+++. ++.+.++++ +|.|..+ .+.+.+.++
T Consensus 276 m~~~~~g~~~i~iglQSgsd~vLk-~m~R~~t--~~~~~~~i~~ir~~~~~~~i~~d~I--vGfPgET---~edf~~tl~ 347 (467)
T PRK14329 276 MAKYDNICKHIHLPVQSGSDRILK-LMNRKYT--REWYLDRIDAIRRIIPDCGISTDMI--AGFPTET---EEDHQDTLS 347 (467)
T ss_pred HHhCCCCCCeEEeCCCcCCHHHHH-hcCCCCC--HHHHHHHHHHHHHhCCCCEEEEeEE--EeCCCCC---HHHHHHHHH
Confidence 6565 788999987 45554433 3444211 23445666677776 455666655 6778654 567777777
Q ss_pred HHHhCCCCEEE
Q 014369 285 ELHDMGCFEIS 295 (426)
Q Consensus 285 ~l~~~Gad~I~ 295 (426)
.+.+.+.+.+.
T Consensus 348 ~i~~l~~~~~~ 358 (467)
T PRK14329 348 LMEEVGYDFAF 358 (467)
T ss_pred HHHhhCCCeEe
Confidence 77778776544
No 440
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=87.56 E-value=26 Score=38.72 Aligned_cols=163 Identities=20% Similarity=0.133 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc--CC--CcEEEEe-CChhhHHHHHHcCCCEE
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL--EG--ARLPVLT-PNLKGFEAAIAAGAKEV 218 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~--~~--~~l~~l~-~~~~di~~a~~~Gv~~V 218 (426)
..+++.-++-+..|.++|.+.|-++.+. +.+++.+....+++ .+ +.+.+=. -+.+-...|++. ++.|
T Consensus 37 T~D~~atv~Qi~~l~~aGceiVRvtv~~-------~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~~a~~~-v~ki 108 (611)
T PRK02048 37 TMDTEACVAQAKRIIDAGGEYVRLTTQG-------VREAENLMNINIGLRSQGYMVPLVADVHFNPKVADVAAQY-AEKV 108 (611)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEcCCC-------HHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHHHHHHh-hCCE
Confidence 3456666888899999999999998643 33444433333332 22 3333311 233323445566 8888
Q ss_pred EEeccCChH-----HH-----hhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC---CC--CCHHHH----
Q 014369 219 AIFASASEA-----FS-----KSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---GA--IPPSKV---- 279 (426)
Q Consensus 219 ~i~~~~Sd~-----~~-----~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~---~r--~~~~~l---- 279 (426)
||--. +=. |. ...|....+..-+++..+|+.||++|..++.-+- .|+-.. .+ .+|+-+
T Consensus 109 RINPG-N~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN--~GSL~~~i~~~yg~tpe~mVeSA 185 (611)
T PRK02048 109 RINPG-NYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVN--HGSLSDRIMSRYGDTPEGMVESC 185 (611)
T ss_pred EECCC-cCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecC--CcCchHHHHHHhCCChHHHHHHH
Confidence 88421 100 00 0112222344557788899999999999984332 222110 01 134333
Q ss_pred HHHHHHHHhCCCC--EEEEcCCCCCCCHHHHHHHHHHHHH
Q 014369 280 AYVAKELHDMGCF--EISLGDTIGVGTPGTVVPMLEAVMA 317 (426)
Q Consensus 280 ~~~~~~l~~~Gad--~I~l~DT~G~~~P~~v~~li~~l~~ 317 (426)
.+.++.+.+.|-+ .|+++-+.-.-.-...+.++..+.+
T Consensus 186 le~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l~~ 225 (611)
T PRK02048 186 MEFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVMEA 225 (611)
T ss_pred HHHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHHHh
Confidence 3466777788866 6667777653333444455555543
No 441
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=87.42 E-value=9.8 Score=38.19 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcCC-CCC-CCHHHHHHHHHHHHHhc
Q 014369 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGV-GTPGTVVPMLEAVMAVV 319 (426)
Q Consensus 243 ~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~DT-~G~-~~P~~v~~li~~l~~~~ 319 (426)
.+.++.+.|++.++-|-+ |.+ .+.+.+..+++++.+.+.. +|.+... ..+ .....+..+++.+.+..
T Consensus 5 ~~~~lL~~A~~~~yAV~A-----fN~-----~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~ 74 (285)
T PRK07709 5 SMKEMLNKALEGKYAVGQ-----FNM-----NNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEM 74 (285)
T ss_pred cHHHHHHHHHHCCceEEE-----EEE-----CCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHc
Confidence 356788899999987653 321 4678999999999999877 4455442 233 23456777888877766
Q ss_pred C-CceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccC
Q 014369 320 P-VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAG 356 (426)
Q Consensus 320 p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~G 356 (426)
. .+|+.+ |=|.|.-......|+++|.+ .+|+|-..
T Consensus 75 ~~~VPV~l--HLDHg~~~e~i~~ai~~GftSVM~DgS~lp 112 (285)
T PRK07709 75 NITVPVAI--HLDHGSSFEKCKEAIDAGFTSVMIDASHHP 112 (285)
T ss_pred CCCCcEEE--ECCCCCCHHHHHHHHHcCCCEEEEeCCCCC
Confidence 4 235665 55788889999999999998 66988653
No 442
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=87.28 E-value=16 Score=35.59 Aligned_cols=177 Identities=15% Similarity=0.167 Sum_probs=102.3
Q ss_pred HHHhhcCC-CCccEEEeCCccccCCCC-CC--CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh
Q 014369 116 TNKFLKGI-PRFVKIVEVGPRDGLQNE-KN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD 191 (426)
Q Consensus 116 ~~~~~~~~-p~~V~I~D~TLRDG~Q~~-~~--~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~ 191 (426)
-.++...+ |..|.++-.=++=..... .. .|..+........|.++.++.|=.|.-+.. ++ ...+++.+.++.
T Consensus 22 E~e~~~~~~p~~v~~h~sRi~~~~~vt~e~L~~m~~~l~~aa~~ll~~a~~dvi~~~cTsgs-~~---~G~~~~~~~i~~ 97 (239)
T TIGR02990 22 ERDFARMVASDRIGVYVNRIPYANPTTPENLRKMQPRLTEAAALILPDEELDVVAYSCTSAS-VV---IGDDEVTRAINA 97 (239)
T ss_pred HHHHHHHhCcCCeEEEEeceeCCCCCCHHHHHHHhhhHHHHHHHhcCCCCCCEEEEccchhh-ee---cCHHHHHHHHHh
Confidence 35554445 676777766443221110 00 122222222233335578998887632211 11 123455555553
Q ss_pred -cCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCC
Q 014369 192 -LEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV 270 (426)
Q Consensus 192 -~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd 270 (426)
.++ +.+.++...-++...+.|+++|.+..|=.+ .++ ..+.++..+.|++|..... |+..+
T Consensus 98 ~~~g--~p~tt~~~A~~~AL~alg~~RIalvTPY~~-------------~v~--~~~~~~l~~~G~eV~~~~~--~~~~~ 158 (239)
T TIGR02990 98 AKPG--TPVVTPSSAAVDGLAALGVRRISLLTPYTP-------------ETS--RPMAQYFAVRGFEIVNFTC--LGLTD 158 (239)
T ss_pred cCCC--CCeeCHHHHHHHHHHHcCCCEEEEECCCcH-------------HHH--HHHHHHHHhCCcEEeeeec--cCCCC
Confidence 222 334444444455566679999999977333 122 3556677889999875433 55543
Q ss_pred C---CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC
Q 014369 271 E---GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP 320 (426)
Q Consensus 271 ~---~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p 320 (426)
. .+.+|+.+.+.++.+...++|.|.+..|. ....++++.+-+.++
T Consensus 159 ~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTn-----Lrt~~vi~~lE~~lG 206 (239)
T TIGR02990 159 DREMARISPDCIVEAALAAFDPDADALFLSCTA-----LRAATCAQRIEQAIG 206 (239)
T ss_pred CceeeecCHHHHHHHHHHhcCCCCCEEEEeCCC-----chhHHHHHHHHHHHC
Confidence 2 47899999999999988899999999763 345667777766654
No 443
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=87.24 E-value=2.8 Score=36.09 Aligned_cols=77 Identities=13% Similarity=0.043 Sum_probs=43.3
Q ss_pred HHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEE
Q 014369 248 AHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVH 327 (426)
Q Consensus 248 v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H 327 (426)
++.+++.|++..+++- |+.-..+.....++.+.+.++|...++++=+.+-.+++++..+.+.+.+ .|. |+-+|
T Consensus 20 ~~~la~~GfktVInlR-----pd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~-Pvl~h 92 (110)
T PF04273_consen 20 LAQLAAQGFKTVINLR-----PDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALES-LPK-PVLAH 92 (110)
T ss_dssp HHHHHHCT--EEEE-S------TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTT-SEEEE
T ss_pred HHHHHHCCCcEEEECC-----CCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCC-CEEEE
Confidence 3456779999875442 4432222224445667788999999999999999999999998877655 565 67777
Q ss_pred eCCC
Q 014369 328 LHDT 331 (426)
Q Consensus 328 ~HNd 331 (426)
|...
T Consensus 93 C~sG 96 (110)
T PF04273_consen 93 CRSG 96 (110)
T ss_dssp -SCS
T ss_pred CCCC
Confidence 7643
No 444
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=87.23 E-value=15 Score=37.42 Aligned_cols=146 Identities=16% Similarity=0.223 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEecC----CCCCccccc--cCHHHHHHHhHhc-CCCcEEEEeCC-hhhHHHHHHcCCCE
Q 014369 146 PTGVKVELIRRLVSSGLPVVEATSF----VSPKWVPQL--ADARDVMEAVRDL-EGARLPVLTPN-LKGFEAAIAAGAKE 217 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~Gv~~IEvG~~----~s~~~~p~~--~D~~~v~~~i~~~-~~~~l~~l~~~-~~di~~a~~~Gv~~ 217 (426)
-++.-+++++++.++|++.|-+.=+ .+|+....+ --.+++++.++.. ++..+.-+|.+ ..-++...+.|++.
T Consensus 184 ~t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg~~~~~~~~~~~~~~~~ 263 (346)
T PRK00115 184 LADATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPDVPVILFGKGAGELLEAMAETGADV 263 (346)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCCcHHHHHHHHhcCCCE
Confidence 4444566778888899999976522 122111000 0012222333221 13444445543 34567777889887
Q ss_pred EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC---
Q 014369 218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF--- 292 (426)
Q Consensus 218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G--~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad--- 292 (426)
+.+--.++ .. +..+..| ..+.++|. |.--..+++.+.+.++.+.+.+.+
T Consensus 264 is~d~~~d-----------l~----------~~k~~~g~~~~i~Gni~-----p~ll~gt~e~i~~~~~~~i~~~~~~gf 317 (346)
T PRK00115 264 VGLDWTVD-----------LA----------EARRRVGDKKALQGNLD-----PAVLLAPPEAIEEEVRAILDGGGGPGH 317 (346)
T ss_pred EeeCCCCC-----------HH----------HHHHHcCCCeEEEeCCC-----hhHhcCCHHHHHHHHHHHHHHhCCCCe
Confidence 77643321 11 1112234 23333332 111123567777777666654322
Q ss_pred EEEEc-CCCCCCCHHHHHHHHHHHHH
Q 014369 293 EISLG-DTIGVGTPGTVVPMLEAVMA 317 (426)
Q Consensus 293 ~I~l~-DT~G~~~P~~v~~li~~l~~ 317 (426)
++... +..--..|+.+..+++++++
T Consensus 318 Il~~Gc~i~~~tp~eNi~a~v~a~~~ 343 (346)
T PRK00115 318 IFNLGHGILPETPPENVKALVEAVHE 343 (346)
T ss_pred eeecCCcCCCCcCHHHHHHHHHHHHH
Confidence 34332 22223344667777777664
No 445
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=87.23 E-value=7.8 Score=41.63 Aligned_cols=210 Identities=15% Similarity=0.154 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh----cCCCcEEE-EeCChhhHHHHHHcCCCEEEEec
Q 014369 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD----LEGARLPV-LTPNLKGFEAAIAAGAKEVAIFA 222 (426)
Q Consensus 148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~----~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~ 222 (426)
++..+.++.|.+.|++.|-+-.-. . ..+.+++.+++ .|++.+.+ .+-+.++.+.+.++|++.|.+..
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~-g-------~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~ 295 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAH-G-------HQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGV 295 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCC-C-------CcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECC
Confidence 455789999999999987764211 1 11333444443 34444333 23467889999999999999776
Q ss_pred cCChHHHhhh-cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 014369 223 SASEAFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG 301 (426)
Q Consensus 223 ~~Sd~~~~~~-~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G 301 (426)
..--.+.... .++... .+..+.++++.+++.|+.|.+ +.+-..+.+ ++|++ .+||+.+.+.-..-
T Consensus 296 g~Gs~~ttr~~~~~g~~-~~~a~~~~~~~~~~~~~~via---------dGgi~~~~d---i~kal-a~GA~~vm~g~~~a 361 (475)
T TIGR01303 296 GPGAMCTTRMMTGVGRP-QFSAVLECAAEARKLGGHVWA---------DGGVRHPRD---VALAL-AAGASNVMVGSWFA 361 (475)
T ss_pred cCCccccCccccCCCCc-hHHHHHHHHHHHHHcCCcEEE---------eCCCCCHHH---HHHHH-HcCCCEEeechhhc
Confidence 4333222222 122222 234455777788888877642 344344544 44443 49999887764432
Q ss_pred CCCHHHHHHHHHHHHHhcCCceE----EEEeCCCcCcHHHHHHHHHHcCCCEEe------------ecccCCCCCCCCCC
Q 014369 302 VGTPGTVVPMLEAVMAVVPVEKL----AVHLHDTYGQSLPNILISLQMGISTVD------------CSVAGLGGCPYAKG 365 (426)
Q Consensus 302 ~~~P~~v~~li~~l~~~~p~~~i----~~H~HNd~GlA~ANaLaAl~aGa~~VD------------~Sv~GlGecP~a~g 365 (426)
- -.+.|...+ +-..-.-+|||.--++..--++-+++. +++-++=.
T Consensus 362 ------------g-~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~v~eGv~~~~~~~~~------ 422 (475)
T TIGR01303 362 ------------G-TYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRARKALFEEGISTSRMGLDP------ 422 (475)
T ss_pred ------------c-cccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhccccccCceecccccccC------
Confidence 1 133464323 224555789997655542112223332 22211111
Q ss_pred CCCcccHHHHHHHHH----h-CCCCCCcChhhHHHHHHHH
Q 014369 366 ASGNVATEDVVYMLS----G-LGVETNVDLRKLMLAGDFI 400 (426)
Q Consensus 366 raGNa~lEevv~~L~----~-lG~~~~iDl~~L~~la~~v 400 (426)
-.| ++.+++..|. . +|+--.-+++.|.+-++++
T Consensus 423 ~~g--~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~~~~~ 460 (475)
T TIGR01303 423 DRG--GVEDLIDHIISGVRSSCTYAGASSLEEFHERAVVG 460 (475)
T ss_pred CCC--CHHHHHHHHHHHHHHHhhhcCCCcHHHHHhCCEEE
Confidence 122 4566666654 2 5665556777777655544
No 446
>PRK02227 hypothetical protein; Provisional
Probab=87.22 E-value=4.4 Score=39.64 Aligned_cols=148 Identities=20% Similarity=0.161 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHH----hHh-cCCCcEEEEeC---------C-hhhHHH
Q 014369 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEA----VRD-LEGARLPVLTP---------N-LKGFEA 209 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~----i~~-~~~~~l~~l~~---------~-~~di~~ 209 (426)
+...+...-+.....+|+++|-+|.+..... ....++++. ++. .++.++.+... . ..-.+.
T Consensus 64 ~~p~~~~~aa~~~a~~GvDyVKvGl~~~~~~----~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~ 139 (238)
T PRK02227 64 YKPGTISLAALGAAATGADYVKVGLYGGKTA----EEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAI 139 (238)
T ss_pred CCchHHHHHHHHHHhhCCCEEEEcCCCCCcH----HHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHH
Confidence 3446667777788899999999998743210 111122222 221 12344333221 1 233567
Q ss_pred HHHcCCCEEEEeccCChHHHhhhcCCCHHH--HHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369 210 AIAAGAKEVAIFASASEAFSKSNINCSIED--SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH 287 (426)
Q Consensus 210 a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e--~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~ 287 (426)
+.++|.+.+.+= ...|. |.+.-+ ..+++.+.++.+|++|+.+- .++-...+++- .|.
T Consensus 140 a~~aGf~g~MlD-----Ta~Kd--g~~Lfd~l~~~~L~~Fv~~ar~~Gl~~g----------LAGSL~~~dip----~L~ 198 (238)
T PRK02227 140 AADAGFDGAMLD-----TAIKD--GKSLFDHMDEEELAEFVAEARSHGLMSA----------LAGSLKFEDIP----ALK 198 (238)
T ss_pred HHHcCCCEEEEe-----cccCC--CcchHhhCCHHHHHHHHHHHHHcccHhH----------hcccCchhhHH----HHH
Confidence 888999987773 22222 333322 35667899999999998754 23333344433 455
Q ss_pred hCCCCEEEE------c-CCCCCCCHHHHHHHHHHHHH
Q 014369 288 DMGCFEISL------G-DTIGVGTPGTVVPMLEAVMA 317 (426)
Q Consensus 288 ~~Gad~I~l------~-DT~G~~~P~~v~~li~~l~~ 317 (426)
.+++|.+.+ . |-.|.+.|+.|.++.+.+..
T Consensus 199 ~l~pD~lGfRgavC~g~dR~~~id~~~V~~~~~~l~~ 235 (238)
T PRK02227 199 RLGPDILGVRGAVCGGGDRTGRIDPELVAELREALRA 235 (238)
T ss_pred hcCCCEEEechhccCCCCcccccCHHHHHHHHHHhhc
Confidence 677775543 3 47899999999998887764
No 447
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=87.19 E-value=9.5 Score=38.84 Aligned_cols=71 Identities=14% Similarity=0.132 Sum_probs=51.8
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 014369 279 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA 355 (426)
Q Consensus 279 l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~ 355 (426)
..+.++.+.++|++.|.+.=+.| .+..+.++++.+++..|..+|.+ +|- .....+..++++|||.|-+.+.
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G--~~~~~~~~i~~ik~~~p~v~Vi~--G~v--~t~~~A~~l~~aGaD~I~vg~g 165 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHG--HSVYVIEMIKFIKKKYPNVDVIA--GNV--VTAEAARDLIDAGADGVKVGIG 165 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCC--CcHHHHHHHHHHHHHCCCceEEE--CCC--CCHHHHHHHHhcCCCEEEECCC
Confidence 45667888899999877633333 45788899999999988555555 222 4456778889999999987553
No 448
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=87.15 E-value=8.6 Score=38.63 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEcCC-CCC-CCHHHHHHHHHHHHHhc
Q 014369 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI-SLGDT-IGV-GTPGTVVPMLEAVMAVV 319 (426)
Q Consensus 243 ~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I-~l~DT-~G~-~~P~~v~~li~~l~~~~ 319 (426)
.++++++.|++.|+-|-+ |.+ .+.+.+..+++++.+.++..| .+... ..+ .-+..+..++..+.+..
T Consensus 5 ~~k~iL~~A~~~~yAV~A-----fN~-----~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~ 74 (288)
T TIGR00167 5 DVKELLQDAKEEGYAIPA-----FNI-----NNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAY 74 (288)
T ss_pred cHHHHHHHHHHCCceEEE-----EEE-----CCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhc
Confidence 466888899999987753 322 357899999999999998744 44332 222 33667788888777766
Q ss_pred C-CceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCC
Q 014369 320 P-VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGG 359 (426)
Q Consensus 320 p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGe 359 (426)
+ .+|+.+ |=|.|.-...+..|+++|.+ .+|+|-..+-+
T Consensus 75 ~~~VPV~l--HLDHg~~~e~i~~ai~~GftSVMiDgS~lp~ee 115 (288)
T TIGR00167 75 PYGVPVAL--HLDHGASEEDCAQAVKAGFSSVMIDGSHEPFEE 115 (288)
T ss_pred cCCCcEEE--ECCCCCCHHHHHHHHHcCCCEEEecCCCCCHHH
Confidence 2 235665 55778888999999999998 66988765543
No 449
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=86.93 E-value=4.7 Score=39.44 Aligned_cols=107 Identities=15% Similarity=0.049 Sum_probs=68.3
Q ss_pred HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l 286 (426)
++.+.+.|.+.|-|....-+ .+ .+.-.++|+.+++.|++|-.-+-.-+..++ ...+++...+.+++.
T Consensus 77 l~~~k~lGf~~IEiS~G~~~--------i~----~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~-~~~~~~~~i~~~~~~ 143 (237)
T TIGR03849 77 LNECDELGFEAVEISDGSME--------IS----LEERCNLIERAKDNGFMVLSEVGKKSPEKD-SELTPDDRIKLINKD 143 (237)
T ss_pred HHHHHHcCCCEEEEcCCccC--------CC----HHHHHHHHHHHHhCCCeEeccccccCCccc-ccCCHHHHHHHHHHH
Confidence 56788899999999755322 12 233457889999999988754443332112 246888889999999
Q ss_pred HhCCCCEEEE-----------cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCC
Q 014369 287 HDMGCFEISL-----------GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD 330 (426)
Q Consensus 287 ~~~Gad~I~l-----------~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HN 330 (426)
.++||+.|.+ .|..|......+.++ .+++|..+|-|-+=+
T Consensus 144 LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i----~~~l~~eklifEAp~ 194 (237)
T TIGR03849 144 LEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVL----AENVDINKVIFEAPQ 194 (237)
T ss_pred HHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHH----HhhCChhcEEEECCC
Confidence 9999986654 344444444444444 444654456665543
No 450
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=86.92 E-value=44 Score=40.07 Aligned_cols=220 Identities=15% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-------CCCcEEEEeCChhh-----------HHHHHH
Q 014369 151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-------EGARLPVLTPNLKG-----------FEAAIA 212 (426)
Q Consensus 151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-------~~~~l~~l~~~~~d-----------i~~a~~ 212 (426)
.+.++.|.+.|+|.|=+-. +|.+.+.+..+..++.. ..+.+++++....+ +.....
T Consensus 151 ~eq~~~L~~~GvD~iliET------i~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~l~~ 224 (1178)
T TIGR02082 151 TEQAKGLLDGGVDLLLIET------CFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTSLEH 224 (1178)
T ss_pred HHHHHHHHhCCCCEEEEec------cCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHHHhc
Q ss_pred cCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC--------CCHHHHHHHHH
Q 014369 213 AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA--------IPPSKVAYVAK 284 (426)
Q Consensus 213 ~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r--------~~~~~l~~~~~ 284 (426)
.+++.|.+-++..+ +.+..+.+.+......-+-+. |+++. .+|+++.+.++
T Consensus 225 ~~~~avGlNCs~gP------------~~m~~~l~~l~~~~~~pi~vy---------PNAGlP~~~~~yd~~p~~~a~~~~ 283 (1178)
T TIGR02082 225 AGIDMIGLNCALGP------------DEMRPHLKHLSEHAEAYVSCH---------PNAGLPNAFGEYDLTPDELAKALA 283 (1178)
T ss_pred CCCCEEEeCCCCCH------------HHHHHHHHHHHHhcCceEEEE---------eCCCCCCCCCcccCCHHHHHHHHH
Q ss_pred HHHhC-CCCEEE-EcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeC---------------------------------
Q 014369 285 ELHDM-GCFEIS-LGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH--------------------------------- 329 (426)
Q Consensus 285 ~l~~~-Gad~I~-l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~H--------------------------------- 329 (426)
.+.+. |+..|. .|-| +|+.++.+-+.++..-|......+.+
T Consensus 284 ~~~~~ggv~IIGGCCGT----tPeHI~ala~~l~~~~p~~~~~~~~~~~~s~~~~~~~~~~~~~~~IGEr~N~~G~k~~~ 359 (1178)
T TIGR02082 284 DFAAEGGLNIVGGCCGT----TPDHIRAIAEAVKNIKPRQRPVLYEPSRLSGLEAITIAQDSNFVNIGERTNVAGSKKFR 359 (1178)
T ss_pred HHHHhCCCcEEEecCCC----CHHHHHHHHHHhhcCCCCCCCCcccceeecCceEEeecCCCceEEEeeccchhhhHHHH
Q ss_pred -----CCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhC----CCCCCcChhhHHHHHHHH
Q 014369 330 -----DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL----GVETNVDLRKLMLAGDFI 400 (426)
Q Consensus 330 -----Nd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~l----G~~~~iDl~~L~~la~~v 400 (426)
.|+.-++.-+..-+++||++||+.+ |... ..+-..++.++..+... .+..-||..+-.-+-.-+
T Consensus 360 ~~i~~~d~~~a~~~A~~qve~GA~iIDVn~-~~~~------vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaL 432 (1178)
T TIGR02082 360 RLIIAEDYDEALDIAKQQVENGAQILDINV-DYGM------LDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGL 432 (1178)
T ss_pred HHHHcCCHHHHHHHHHHHHHCCCCEEEECC-CCCC------CCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHH
Q ss_pred HHHhCCCC
Q 014369 401 NKHLGRPS 408 (426)
Q Consensus 401 ~~~~g~~~ 408 (426)
+.+-|.++
T Consensus 433 k~~~G~~I 440 (1178)
T TIGR02082 433 KCIQGKCI 440 (1178)
T ss_pred HhcCCCCE
No 451
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=86.89 E-value=20 Score=37.67 Aligned_cols=142 Identities=15% Similarity=0.220 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEEecC----CCCCccccccCHHHHHHHhHhcCC---CcEEEEeCC-----hhhHHHHH
Q 014369 144 TVPTGVKVELIRRLVSSGLPVVEATSF----VSPKWVPQLADARDVMEAVRDLEG---ARLPVLTPN-----LKGFEAAI 211 (426)
Q Consensus 144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~----~s~~~~p~~~D~~~v~~~i~~~~~---~~l~~l~~~-----~~di~~a~ 211 (426)
..+.+..++-++.|.+.|++.|-+... ...+.. ....++++.+..+++ +++..+.|. .+++-.+.
T Consensus 161 sr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~---~~l~~Ll~~l~~i~~~~~ir~~~~~p~~~~~~~~~l~~~~ 237 (420)
T TIGR01578 161 SYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIG---SRLPELLRLITEIPGEFRLRVGMMNPKNVLEILDELANVY 237 (420)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCC---cCHHHHHHHHHhCCCCcEEEEcCCCCCcccccCHHHHHHH
Confidence 458888888889999999988776421 111100 124556666655543 233333332 12332222
Q ss_pred -HcC-CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369 212 -AAG-AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (426)
Q Consensus 212 -~~G-v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l 286 (426)
..+ .+.+++.+ +.|+--+ ..+++. ...+.+.++++.+++. |+.+..+++ +|.|.. +.+.+.+.++.+
T Consensus 238 ~~~~~~~~l~iglQSgsd~iL-~~m~R~--~~~~~~~~~i~~i~~~~~~i~i~~~~I--vG~PgE---T~ed~~~t~~~~ 309 (420)
T TIGR01578 238 QHEKVYKFLHLPVQSGSDSVL-KEMKRE--YTVSDFEDIVDKFRERFPDLTLSTDII--VGFPTE---TDDDFEETMELL 309 (420)
T ss_pred hcccccCceEeCCccCCHHHH-HhcCCC--CCHHHHHHHHHHHHHhCCCCEEEeeEE--EeCCCC---CHHHHHHHHHHH
Confidence 233 46777776 4454333 344442 2244566777888887 777776666 677866 357777777778
Q ss_pred HhCCCCEEEE
Q 014369 287 HDMGCFEISL 296 (426)
Q Consensus 287 ~~~Gad~I~l 296 (426)
.+.+.+.+.+
T Consensus 310 ~~~~~~~i~~ 319 (420)
T TIGR01578 310 RKYRPEKINI 319 (420)
T ss_pred HHhCCCEEEE
Confidence 8888776663
No 452
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=86.77 E-value=11 Score=38.56 Aligned_cols=75 Identities=13% Similarity=0.184 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhCCC--CEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369 275 PPSKVAYVAKELHDMGC--FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 352 (426)
Q Consensus 275 ~~~~l~~~~~~l~~~Ga--d~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~ 352 (426)
+++.+ +-++.+.++|+ |.|.| |+.- ..-..+.++|+.+++.+|+.+|-.= |-+ -...+..++++||+.|.+
T Consensus 95 ~~~~~-~~~~~Lv~ag~~~d~i~i-D~a~-gh~~~~~e~I~~ir~~~p~~~vi~g---~V~-t~e~a~~l~~aGad~i~v 167 (326)
T PRK05458 95 KDDEY-DFVDQLAAEGLTPEYITI-DIAH-GHSDSVINMIQHIKKHLPETFVIAG---NVG-TPEAVRELENAGADATKV 167 (326)
T ss_pred CHHHH-HHHHHHHhcCCCCCEEEE-ECCC-CchHHHHHHHHHHHhhCCCCeEEEE---ecC-CHHHHHHHHHcCcCEEEE
Confidence 34444 44667888855 98877 4333 5568889999999999986544431 011 345678888999999876
Q ss_pred cccC
Q 014369 353 SVAG 356 (426)
Q Consensus 353 Sv~G 356 (426)
+..|
T Consensus 168 g~~~ 171 (326)
T PRK05458 168 GIGP 171 (326)
T ss_pred CCCC
Confidence 6554
No 453
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=86.75 E-value=33 Score=34.44 Aligned_cols=125 Identities=20% Similarity=0.227 Sum_probs=73.5
Q ss_pred HHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369 209 AAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH 287 (426)
Q Consensus 209 ~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~ 287 (426)
..++.|++.|-|-...+... .-..+.++-++++..+++..++. ++.+. + |.. .+ ++++++.
T Consensus 46 ~~~~~GAdIIDIGgeSTrPg---~~~v~~eeE~~Rv~pvI~~l~~~~~~~IS------I---DT~--~~----~va~~AL 107 (282)
T PRK11613 46 LMINAGATIIDVGGESTRPG---AAEVSVEEELDRVIPVVEAIAQRFEVWIS------V---DTS--KP----EVIRESA 107 (282)
T ss_pred HHHHCCCcEEEECCCCCCCC---CCCCCHHHHHHHHHHHHHHHHhcCCCeEE------E---ECC--CH----HHHHHHH
Confidence 44578999999984322111 11346788899999999888853 54433 1 322 22 4667777
Q ss_pred hCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcC-----------------cHHHHHHHHHHcCCC--
Q 014369 288 DMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG-----------------QSLPNILISLQMGIS-- 348 (426)
Q Consensus 288 ~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~G-----------------lA~ANaLaAl~aGa~-- 348 (426)
++|++.| -|..|...| ++.++ +++ +...-+-.|.+.+.. ......-.|..+|+.
T Consensus 108 ~~GadiI--NDI~g~~d~-~~~~~---~a~-~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~ 180 (282)
T PRK11613 108 KAGAHII--NDIRSLSEP-GALEA---AAE-TGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKE 180 (282)
T ss_pred HcCCCEE--EECCCCCCH-HHHHH---HHH-cCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChh
Confidence 8899974 566776555 33333 333 322236667642211 112445568899997
Q ss_pred --EEeecccCCCC
Q 014369 349 --TVDCSVAGLGG 359 (426)
Q Consensus 349 --~VD~Sv~GlGe 359 (426)
++|-.+ |+|.
T Consensus 181 ~IilDPGi-GF~k 192 (282)
T PRK11613 181 KLLLDPGF-GFGK 192 (282)
T ss_pred hEEEeCCC-CcCC
Confidence 789953 4554
No 454
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=86.72 E-value=2.7 Score=41.06 Aligned_cols=74 Identities=24% Similarity=0.388 Sum_probs=47.2
Q ss_pred HHHHHHhHhc--CCCcEEEEe-CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCC-H-HHHHHHHHHHHHHHHhcCCc
Q 014369 183 RDVMEAVRDL--EGARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCS-I-EDSLVRYRAVAHAAKVLSIP 257 (426)
Q Consensus 183 ~~v~~~i~~~--~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s-~-~e~l~~~~~~v~~Ak~~G~~ 257 (426)
+.+...++++ .+++++.+. |..+.++.|.+.|++.|-++... +....-... . ++.++++.+++++|+++|+.
T Consensus 111 ~~l~~~i~~L~~~gIrvSLFiDP~~~qi~~A~~~Gad~VELhTG~---yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~ 187 (239)
T PF03740_consen 111 DRLKPVIKRLKDAGIRVSLFIDPDPEQIEAAKELGADRVELHTGP---YANAFDDAEEAEEELLERLRDAARYAHELGLG 187 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEEEEETHH---HHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-E
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHcCCCEEEEehhH---hhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 3444444433 467777766 77889999999999999998641 222211111 1 23379999999999999998
Q ss_pred EE
Q 014369 258 VR 259 (426)
Q Consensus 258 v~ 259 (426)
|.
T Consensus 188 Vn 189 (239)
T PF03740_consen 188 VN 189 (239)
T ss_dssp EE
T ss_pred Ee
Confidence 87
No 455
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=86.70 E-value=5 Score=39.83 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=67.0
Q ss_pred CCCCHHHHHHHHHHHHhC-CCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHc
Q 014369 272 GAIPPSKVAYVAKELHDM-GCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQM 345 (426)
Q Consensus 272 ~r~~~~~l~~~~~~l~~~-Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~a 345 (426)
+..|.+-+.++++.+.+. |++.|.+.-|+|= ++.++=.++++.+.+... ..+|-++. +++.--++..+..|.++
T Consensus 16 g~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~ 95 (288)
T cd00954 16 GEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEEL 95 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHc
Confidence 578999999999999999 9999999999884 556777777777777664 35677777 77888889999999999
Q ss_pred CCCEEee
Q 014369 346 GISTVDC 352 (426)
Q Consensus 346 Ga~~VD~ 352 (426)
||+.|=.
T Consensus 96 Gad~v~~ 102 (288)
T cd00954 96 GYDAISA 102 (288)
T ss_pred CCCEEEE
Confidence 9998754
No 456
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=86.65 E-value=3.7 Score=42.64 Aligned_cols=70 Identities=17% Similarity=0.138 Sum_probs=43.8
Q ss_pred hCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE--eecccCCC
Q 014369 288 DMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV--DCSVAGLG 358 (426)
Q Consensus 288 ~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V--D~Sv~GlG 358 (426)
..|.+.|+=+=.-+.-+|+++.++|..||+..|..+|++-.=-..+.....+. +..+|+|.| |+.=+|-|
T Consensus 170 ~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~-~~~ag~D~ItIDG~~GGTG 241 (368)
T PF01645_consen 170 PPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAG-AAKAGADFITIDGAEGGTG 241 (368)
T ss_dssp -TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHH-HHHTT-SEEEEE-TT---S
T ss_pred CCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHh-hhhccCCEEEEeCCCCCCC
Confidence 45788888888888999999999999999999888888877655555544333 889999965 44444444
No 457
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=86.63 E-value=26 Score=33.99 Aligned_cols=122 Identities=16% Similarity=0.076 Sum_probs=58.3
Q ss_pred hhHHHHHHcCCCEEEEeccCChHHHh-hhcCCCHHHHHHHHHHHHHHHHhcCCcEEEE-EEe----eecCCCCC--CCCH
Q 014369 205 KGFEAAIAAGAKEVAIFASASEAFSK-SNINCSIEDSLVRYRAVAHAAKVLSIPVRGY-VSC----VVGCPVEG--AIPP 276 (426)
Q Consensus 205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~-~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~-v~~----~fg~pd~~--r~~~ 276 (426)
+.++.+.++|.+.|-+.+.- .+.. ....++. ..+.++.+.+++.|+.+... +.. .++.++.. ....
T Consensus 20 e~~~~~~~~G~~~iEl~~~~--~~~~~~~~~~~~----~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~ 93 (284)
T PRK13210 20 ERLVFAKELGFDFVEMSVDE--SDERLARLDWSK----EERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERAL 93 (284)
T ss_pred HHHHHHHHcCCCeEEEecCC--cccccccccCCH----HHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHH
Confidence 45677778888877776431 1110 0112222 23445566777788876531 110 01111100 0112
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhc-----CCceEEEEeCCCc
Q 014369 277 SKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVV-----PVEKLAVHLHDTY 332 (426)
Q Consensus 277 ~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~-----p~~~i~~H~HNd~ 332 (426)
+.+.++++.+.++|++.|.++.... ...+.....+++.+++.. -++.|.+|.|...
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~ 157 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDTP 157 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCcc
Confidence 4556677777778888887752111 112233344444433321 1346777777543
No 458
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=86.63 E-value=4.8 Score=38.46 Aligned_cols=80 Identities=10% Similarity=0.036 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHh---cCC-ceEEEEeCC---C---cCcHHHH-HHHH
Q 014369 274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV---VPV-EKLAVHLHD---T---YGQSLPN-ILIS 342 (426)
Q Consensus 274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~---~p~-~~i~~H~HN---d---~GlA~AN-aLaA 342 (426)
.+.+.....++.+.++|++.|.+-...|.....++.+.++.+++. ++. .-++.|.+. . ...-+.- +..|
T Consensus 73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a 152 (235)
T cd00958 73 DNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIG 152 (235)
T ss_pred CCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHH
Confidence 445555556778889999999888888877666677677776653 322 123444410 0 0012222 5558
Q ss_pred HHcCCCEEeec
Q 014369 343 LQMGISTVDCS 353 (426)
Q Consensus 343 l~aGa~~VD~S 353 (426)
.++|||+|=+.
T Consensus 153 ~~~GaD~Ik~~ 163 (235)
T cd00958 153 AELGADIVKTK 163 (235)
T ss_pred HHHCCCEEEec
Confidence 89999999774
No 459
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=86.61 E-value=10 Score=36.39 Aligned_cols=163 Identities=19% Similarity=0.165 Sum_probs=90.1
Q ss_pred hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH-----HH
Q 014369 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK-----VA 280 (426)
Q Consensus 206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~-----l~ 280 (426)
.++.+.+.+++-|-+.-.. +. ...+.....+..+ +.+.+.|..+...... +.
T Consensus 24 ~~~~a~~~~~~av~v~p~~----------------~~---~~~~~~~~~~~~~----~~vi~fp~g~~~~~~k~~~~~~~ 80 (236)
T PF01791_consen 24 LCREAIEYGFDAVCVTPGY----------------VK---PAAELLAGSGVKV----GLVIGFPFGTSTTEPKGYDQIVA 80 (236)
T ss_dssp HHHHHHHHTSSEEEEEGGG----------------HH---HHHHHSTTSTSEE----EEEESTTTSSSTHHHHTCEEEHH
T ss_pred HHHHHHHhCCCEEEECHHH----------------HH---HHHHHhhcccccc----ceEEEeCCCCCccccccccchHH
Confidence 4567778898888876321 11 2222222223333 3335566655444444 44
Q ss_pred HHHHHHHhCCCCEEEEcCCCCCCCH---HHHHHHHHHHHHhcC--CceEEEEeCCCcCcH----------HHHHHHHHHc
Q 014369 281 YVAKELHDMGCFEISLGDTIGVGTP---GTVVPMLEAVMAVVP--VEKLAVHLHDTYGQS----------LPNILISLQM 345 (426)
Q Consensus 281 ~~~~~l~~~Gad~I~l~DT~G~~~P---~~v~~li~~l~~~~p--~~~i~~H~HNd~GlA----------~ANaLaAl~a 345 (426)
-++.+.++|||.|-+.=-.|...+ ..+.+.++.+++... .+++-+. -.-.+.. ...+..|.++
T Consensus 81 -~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I~~a~ria~e~ 158 (236)
T PF01791_consen 81 -EVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLIARAARIAAEL 158 (236)
T ss_dssp -HHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHHHHHHHHHHHh
Confidence 477788999998877655644444 445555556555431 3456666 5556666 5556777899
Q ss_pred CCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh---CC------CC--CCcChhhHHHHHHHHHHH
Q 014369 346 GISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG---LG------VE--TNVDLRKLMLAGDFINKH 403 (426)
Q Consensus 346 Ga~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~---lG------~~--~~iDl~~L~~la~~v~~~ 403 (426)
|||+|=++..+- ..+..+++..+.+. .. +. -|++.+.+.+..+...++
T Consensus 159 GaD~vKt~tg~~----------~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~ 217 (236)
T PF01791_consen 159 GADFVKTSTGKP----------VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEF 217 (236)
T ss_dssp T-SEEEEE-SSS----------SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHH
T ss_pred CCCEEEecCCcc----------ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHH
Confidence 999999888732 22343443333221 22 22 367777777766666643
No 460
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=86.53 E-value=13 Score=38.29 Aligned_cols=77 Identities=12% Similarity=0.091 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCC----CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCE
Q 014369 274 IPPSKVAYVAKELHDMGCFEISLGDTIGV----GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIST 349 (426)
Q Consensus 274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~----~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~ 349 (426)
.+++.+.+.++.+.+.|+.+|.|. + |. ..++.+.++++.+++.+|.+.+++. -+...-...-.++|++.
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lv-g-Ge~p~~~~~e~l~eii~~Ik~~~p~i~Iei~-----~lt~e~~~~Lk~aGv~r 175 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLV-T-GESEKAAGVEYIAEAIKLAREYFSSLAIEVQ-----PLNEEEYKKLVEAGLDG 175 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEe-e-CCCCCCCCHHHHHHHHHHHHHhCCccccccc-----cCCHHHHHHHHHcCCCE
Confidence 367777777877778888888776 2 32 3346677777777777764333221 13333333334778887
Q ss_pred EeecccCC
Q 014369 350 VDCSVAGL 357 (426)
Q Consensus 350 VD~Sv~Gl 357 (426)
+...+--+
T Consensus 176 ~~i~lET~ 183 (366)
T TIGR02351 176 VTVYQETY 183 (366)
T ss_pred EEEEeecC
Confidence 76655543
No 461
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=86.50 E-value=31 Score=33.76 Aligned_cols=98 Identities=20% Similarity=0.206 Sum_probs=48.4
Q ss_pred HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l 286 (426)
++..++.|++.|.+.-+++|.+ ..|.+|-.+-++.+++.++. .++|.+.+ +..+.+...++++.+
T Consensus 24 i~~l~~~Gv~gi~~~GstGE~~-----~ls~~Er~~l~~~~~~~~~~-~~~vi~gv---------~~~~~~~~i~~a~~a 88 (281)
T cd00408 24 VEFLIEAGVDGLVVLGTTGEAP-----TLTDEERKEVIEAVVEAVAG-RVPVIAGV---------GANSTREAIELARHA 88 (281)
T ss_pred HHHHHHcCCCEEEECCCCcccc-----cCCHHHHHHHHHHHHHHhCC-CCeEEEec---------CCccHHHHHHHHHHH
Confidence 3445556666666666666532 23445554444444444331 22222111 122345566666666
Q ss_pred HhCCCCEEEEcCCC-CCCCHHHHHHHHHHHHHhc
Q 014369 287 HDMGCFEISLGDTI-GVGTPGTVVPMLEAVMAVV 319 (426)
Q Consensus 287 ~~~Gad~I~l~DT~-G~~~P~~v~~li~~l~~~~ 319 (426)
.++|+|.|-+.=-. -..+++++.+.++.+.+..
T Consensus 89 ~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~ 122 (281)
T cd00408 89 EEAGADGVLVVPPYYNKPSQEGIVAHFKAVADAS 122 (281)
T ss_pred HHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC
Confidence 66676654443221 1234566666666666553
No 462
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=86.49 E-value=1.5 Score=42.35 Aligned_cols=122 Identities=23% Similarity=0.310 Sum_probs=72.4
Q ss_pred HHHHhHhc--CCCcEEEEe-CChhhHHHHHHcCCCEEEEeccCC-hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEE
Q 014369 185 VMEAVRDL--EGARLPVLT-PNLKGFEAAIAAGAKEVAIFASAS-EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG 260 (426)
Q Consensus 185 v~~~i~~~--~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~S-d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~ 260 (426)
+.+.++++ .+++++-+. +..++++.|.+.|++.|-++...- +.|.. ....-.+..++++...+++|.++|+.|.+
T Consensus 113 l~~~v~~L~~~GirVSLFiD~d~~qi~aa~~~gA~~IELhTG~Ya~~~~~-~~~~~~~~el~rl~~~a~~A~~lGL~VnA 191 (243)
T COG0854 113 LRDAVRRLKNAGIRVSLFIDPDPEQIEAAAEVGAPRIELHTGPYADAHDA-AEQARADAELERLAKAAKLAAELGLKVNA 191 (243)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHhCCCEEEEecccccccCCh-HHHHHHHHHHHHHHHHHHHHHHcCceEec
Confidence 34445543 467888777 688999999999999999986421 11110 00001123688999999999999998862
Q ss_pred EEEeeecCCCCCCCCHHHHHHHHHH--HHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014369 261 YVSCVVGCPVEGAIPPSKVAYVAKE--LHDMGCFEISLGDTIGVGTPGTVVPMLEAVMA 317 (426)
Q Consensus 261 ~v~~~fg~pd~~r~~~~~l~~~~~~--l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~ 317 (426)
| ++ .+...+..+++. +.+..+---.++|.+=++.+..|.++...++.
T Consensus 192 ------G---Hg-Lty~Nv~~~a~~~~i~ElnIGH~iia~Av~~Gl~~aV~~m~~~~~~ 240 (243)
T COG0854 192 ------G---HG-LTYHNVKPLAAIPPLAELNIGHSIIARAVFVGLEEAVREMKRLMKR 240 (243)
T ss_pred ------C---CC-ccccchHHHhcCCcceeecccHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 1 11 222233333322 22222222223556667778888887777654
No 463
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=86.43 E-value=25 Score=31.75 Aligned_cols=81 Identities=19% Similarity=0.083 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCC---HHHHHHHHHHHHHhc-CCceEEE--EeCCCcCcHHHHH--HHHHHcC
Q 014369 275 PPSKVAYVAKELHDMGCFEISLGDTIGVGT---PGTVVPMLEAVMAVV-PVEKLAV--HLHDTYGQSLPNI--LISLQMG 346 (426)
Q Consensus 275 ~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~---P~~v~~li~~l~~~~-p~~~i~~--H~HNd~GlA~ANa--LaAl~aG 346 (426)
..+...+.++.+.++|+|.+.+.-..+... ++.+.+.++.+.+.. .+.++-+ ..+.+........ ..+.+.|
T Consensus 63 ~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g 142 (201)
T cd00945 63 TTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAG 142 (201)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 367888889999999999998876665443 578888888888874 2233333 2233322222111 1245789
Q ss_pred CCEEeeccc
Q 014369 347 ISTVDCSVA 355 (426)
Q Consensus 347 a~~VD~Sv~ 355 (426)
++.|-.+..
T Consensus 143 ~~~iK~~~~ 151 (201)
T cd00945 143 ADFIKTSTG 151 (201)
T ss_pred CCEEEeCCC
Confidence 999987764
No 464
>PLN02389 biotin synthase
Probab=86.25 E-value=6.4 Score=41.05 Aligned_cols=130 Identities=21% Similarity=0.191 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHH
Q 014369 236 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAV 315 (426)
Q Consensus 236 s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l 315 (426)
+.++.++ .++.+++.|+.-. .+...+-.......+.+++.++++.+.+.|.. ++=+.|.++++++..|-++=
T Consensus 117 s~EeIl~----~a~~~~~~G~~~~-~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~---i~~s~G~l~~E~l~~LkeAG 188 (379)
T PLN02389 117 SKDDVLE----AAKRAKEAGSTRF-CMGAAWRDTVGRKTNFNQILEYVKEIRGMGME---VCCTLGMLEKEQAAQLKEAG 188 (379)
T ss_pred CHHHHHH----HHHHHHHcCCCEE-EEEecccCCCCChhHHHHHHHHHHHHhcCCcE---EEECCCCCCHHHHHHHHHcC
Confidence 4455544 4556667787532 12111101111113457888888888776643 34588998888887775552
Q ss_pred HHhcCCceEE--------EEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhC
Q 014369 316 MAVVPVEKLA--------VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL 382 (426)
Q Consensus 316 ~~~~p~~~i~--------~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~l 382 (426)
...++. .|+ +|...++---+...-.|-++|...--+-|.|+|| ..-...+.+..|+.+
T Consensus 189 ld~~~~-~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgE--------t~edrv~~l~~Lr~L 254 (379)
T PLN02389 189 LTAYNH-NLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGE--------AEEDRVGLLHTLATL 254 (379)
T ss_pred CCEEEe-eecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCC--------CHHHHHHHHHHHHhc
Confidence 222221 122 2333466677788888899999888888999998 233444455555555
No 465
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=86.24 E-value=6.8 Score=40.38 Aligned_cols=121 Identities=12% Similarity=0.060 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcCC----CCCCCHH----------
Q 014369 242 VRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT----IGVGTPG---------- 306 (426)
Q Consensus 242 ~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~DT----~G~~~P~---------- 306 (426)
+++.++.+.|++.++-|-+ |.+ .+.+.+..+.+++.+++.. +|.+... .+..+.+
T Consensus 2 ~~~k~iL~~A~~~~yAV~A-----fN~-----~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~ 71 (345)
T cd00946 2 DDVLKLFDYAKENGFAIPA-----VNC-----TSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAG 71 (345)
T ss_pred hHHHHHHHHHHHCCceEEE-----Eee-----CCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhh
Confidence 3467888999999987653 322 4678899999999999977 5555443 1222111
Q ss_pred --HHHHHHHHHHHhcCCceEEEEeCCCcCcH-----HHHHH--------HHHHcCCC--EEeecccCCCCCCCCCCCCCc
Q 014369 307 --TVVPMLEAVMAVVPVEKLAVHLHDTYGQS-----LPNIL--------ISLQMGIS--TVDCSVAGLGGCPYAKGASGN 369 (426)
Q Consensus 307 --~v~~li~~l~~~~p~~~i~~H~HNd~GlA-----~ANaL--------aAl~aGa~--~VD~Sv~GlGecP~a~graGN 369 (426)
.+..++..+.+.... |+.+|. |.|.- ....+ .|+++|.+ ++|+|-..+-+ -.
T Consensus 72 ~~~~~~~v~~~A~~~~V-PValHL--DHg~~~~~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS~lp~eE--------NI 140 (345)
T cd00946 72 AIAAAHHVRSMAEHYGV-PVVLHT--DHCAKKLLPWFDGLLEADEEYFKQHGEPLFSSHMLDLSEEPLEE--------NI 140 (345)
T ss_pred HHHHHHHHHHHHHHCCC-CEEEEC--CCCCCccchhhHHHHHHHHHHHHHhccCCCceEEeeCCCCCHHH--------HH
Confidence 577888888777753 566654 55555 34444 45588988 77999776655 12
Q ss_pred ccHHHHHHHHHhCC
Q 014369 370 VATEDVVYMLSGLG 383 (426)
Q Consensus 370 a~lEevv~~L~~lG 383 (426)
.-|-++|...+.+|
T Consensus 141 ~~TkevVe~Ah~~g 154 (345)
T cd00946 141 EICKKYLERMAKIN 154 (345)
T ss_pred HHHHHHHHHHHHcC
Confidence 34566666665433
No 466
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=86.17 E-value=29 Score=35.47 Aligned_cols=112 Identities=12% Similarity=0.146 Sum_probs=65.2
Q ss_pred HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC-ChhhHHHHHHcCCCEEEEeccCChHHH
Q 014369 151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP-NLKGFEAAIAAGAKEVAIFASASEAFS 229 (426)
Q Consensus 151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-~~~di~~a~~~Gv~~V~i~~~~Sd~~~ 229 (426)
.++++.|.++|++.+.+.+ .+|.....+...+..+..+.+ ..++++.+++.++ .+.+.
T Consensus 43 ~~i~~~l~~~G~~~~~vas------------~~Ea~~lr~~G~~~~ilvl~~~~~~~~~~~~~~~l-~~~v~-------- 101 (367)
T TIGR00492 43 IEVAKTLLQAGADYFGVAN------------LEEAITLRKAGITAPILLLGGFFAEDLKILAAWDL-TTTVH-------- 101 (367)
T ss_pred HHHHHHHHHCCCCEEEECc------------HHHHHHHHhcCCCCCEEEEeCCCHHHHHHHHHcCC-EEEEC--------
Confidence 6799999999999888764 234333333223345555554 4567888888775 33331
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC--CCHHHHHHHHHHHHhC-CCC-EEEE
Q 014369 230 KSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA--IPPSKVAYVAKELHDM-GCF-EISL 296 (426)
Q Consensus 230 ~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r--~~~~~l~~~~~~l~~~-Gad-~I~l 296 (426)
.++.+..+-+.++++|.++.+.|..-.|. +| .+++.+.++++.+... +.. ...|
T Consensus 102 ----------s~~~l~~l~~~a~~~~~~~~V~l~VdtGm---~R~Gi~~~e~~~~~~~i~~~~~l~~l~Gi 159 (367)
T TIGR00492 102 ----------SVEQLQALEEALLKEPKRLKVHLKIDTGM---NRLGVKPDEAALFVQKLRQLKKFLELEGI 159 (367)
T ss_pred ----------CHHHHHHHHHHHHHcCCceEEEEEeeCCC---CCCCCChHHHHHHHHHHHhCCCCCCceEE
Confidence 13444455556677786666656543331 23 4566666766666554 455 4444
No 467
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=86.16 E-value=20 Score=34.27 Aligned_cols=121 Identities=21% Similarity=0.180 Sum_probs=78.6
Q ss_pred CCHHHHHHHHHHHHhC-CCCeEEEecCCCCCccccccCHHHHHHHhHhc--CCCcEEE-EeCChhhHHHHHHcCCCEEEE
Q 014369 145 VPTGVKVELIRRLVSS-GLPVVEATSFVSPKWVPQLADARDVMEAVRDL--EGARLPV-LTPNLKGFEAAIAAGAKEVAI 220 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~-Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~--~~~~l~~-l~~~~~di~~a~~~Gv~~V~i 220 (426)
.+.++.++.++.|.+. |.-.|++.. +. +-+++++.+ .++++.+ .+-+......|+++|++.|..
T Consensus 61 ~~~e~~i~~a~~l~~~~~~~~iKIP~--T~----------~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP 128 (211)
T cd00956 61 TDAEGMVAEARKLASLGGNVVVKIPV--TE----------DGLKAIKKLSEEGIKTNVTAIFSAAQALLAAKAGATYVSP 128 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEcC--cH----------hHHHHHHHHHHcCCceeeEEecCHHHHHHHHHcCCCEEEE
Confidence 5788899999999887 666666642 21 222333322 2555544 456788888999999999888
Q ss_pred eccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369 221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG 297 (426)
Q Consensus 221 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~ 297 (426)
|+.-- ...+. +.++.+.++.+.++..|+.+.+ .. ++--++..+.+ +..+|++.+.++
T Consensus 129 ~vgR~-----~~~g~---dg~~~i~~i~~~~~~~~~~tki--l~------As~r~~~ei~~----a~~~Gad~vTv~ 185 (211)
T cd00956 129 FVGRI-----DDLGG---DGMELIREIRTIFDNYGFDTKI--LA------ASIRNPQHVIE----AALAGADAITLP 185 (211)
T ss_pred ecChH-----hhcCC---CHHHHHHHHHHHHHHcCCCceE--Ee------cccCCHHHHHH----HHHcCCCEEEeC
Confidence 86521 22343 4566777888889999988663 21 23234555444 446999999886
No 468
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=86.12 E-value=7.3 Score=40.49 Aligned_cols=75 Identities=17% Similarity=0.144 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhCCCCeEEEecC-CCCCccccccCHHHHHHHhHhcCCCcEEE-EeCChhhHHHHHHcCCCEEEEecc
Q 014369 148 GVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPV-LTPNLKGFEAAIAAGAKEVAIFAS 223 (426)
Q Consensus 148 ~~ki~I~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~~~v~~~i~~~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~ 223 (426)
....++++.|.++|++.|.+-.- ....+...-.+...+.+.++.. ++.+.+ -+.+.++.+.+.++|+|.|.+...
T Consensus 141 ~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~-~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 141 QRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL-DVPVIVGGCVTYTTALHLMRTGAAGVLVGIG 217 (368)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCCEEEECCC
Confidence 34578999999999999999421 1100000001345555555553 444433 335678888899999999977643
No 469
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=86.09 E-value=26 Score=34.11 Aligned_cols=125 Identities=22% Similarity=0.241 Sum_probs=82.2
Q ss_pred HHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369 208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (426)
Q Consensus 208 ~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l 286 (426)
++|-..|++.|.|... .++|+.+|+. +++|. ++ ..+|+.+...+
T Consensus 34 ~AA~~ggAt~vDIAad---------------------p~LV~~~~~~s~lPIC--VS---------aVep~~f~~aV--- 78 (242)
T PF04481_consen 34 KAAEIGGATFVDIAAD---------------------PELVKLAKSLSNLPIC--VS---------AVEPELFVAAV--- 78 (242)
T ss_pred HHHHccCCceEEecCC---------------------HHHHHHHHHhCCCCeE--ee---------cCCHHHHHHHH---
Confidence 3444568899999753 2566666664 56665 22 35677766544
Q ss_pred HhCCCCEEEEcCC------CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH--HHHHHHHHHcCCCEEeecccCCC
Q 014369 287 HDMGCFEISLGDT------IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS--LPNILISLQMGISTVDCSVAGLG 358 (426)
Q Consensus 287 ~~~Gad~I~l~DT------~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA--~ANaLaAl~aGa~~VD~Sv~GlG 358 (426)
++|+|.|.|..= -=.+..++|-.|.+..|+.+|+++|.+-.-..+-+- +--+..-..+|+|+|.+- +|--
T Consensus 79 -~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTE-Ggts 156 (242)
T PF04481_consen 79 -KAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTE-GGTS 156 (242)
T ss_pred -HhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcC-CCCC
Confidence 689998888742 234667899999999999999988888555444433 344455568999999864 3333
Q ss_pred CCCCCCCCCCc
Q 014369 359 GCPYAKGASGN 369 (426)
Q Consensus 359 ecP~a~graGN 369 (426)
.-|+.+|--|+
T Consensus 157 s~p~~~g~lgl 167 (242)
T PF04481_consen 157 SKPTSPGILGL 167 (242)
T ss_pred CCCCCcchHHH
Confidence 33555554333
No 470
>PRK05926 hypothetical protein; Provisional
Probab=86.04 E-value=17 Score=37.80 Aligned_cols=77 Identities=13% Similarity=0.111 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC---CHHHHHHHHHHHHHhcCCceEEEEeC---------CCcCcHHHHH
Q 014369 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVEKLAVHLH---------DTYGQSLPNI 339 (426)
Q Consensus 272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~---~P~~v~~li~~l~~~~p~~~i~~H~H---------Nd~GlA~ANa 339 (426)
...+++.+.+.++.+ +.|+.+|.|.. |.. ..+.+.++++.+++.+|. +.+|+- +..|+...-.
T Consensus 97 ~~ls~eeI~~~a~~a-~~G~~ei~iv~--G~~p~~~~e~~~e~i~~Ik~~~p~--i~i~a~s~~Ei~~~~~~~~~~~~e~ 171 (370)
T PRK05926 97 WFYTPDQLVQSIKEN-PSPITETHIVA--GCFPSCNLAYYEELFSKIKQNFPD--LHIKALTAIEYAYLSKLDNLPVKEV 171 (370)
T ss_pred ccCCHHHHHHHHHHH-hcCCCEEEEEe--CcCCCCCHHHHHHHHHHHHHhCCC--eeEEECCHHHHHHHHhhcCCCHHHH
Confidence 346789999999888 79999999994 554 236678899999999985 455543 3456666776
Q ss_pred HHHH-HcCCCEEeec
Q 014369 340 LISL-QMGISTVDCS 353 (426)
Q Consensus 340 LaAl-~aGa~~VD~S 353 (426)
+..+ +||++.+...
T Consensus 172 l~~LkeAGl~~~~g~ 186 (370)
T PRK05926 172 LQTLKIAGLDSIPGG 186 (370)
T ss_pred HHHHHHcCcCccCCC
Confidence 7776 6699877643
No 471
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=86.01 E-value=15 Score=38.04 Aligned_cols=78 Identities=9% Similarity=0.041 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcC--CCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369 274 IPPSKVAYVAKELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351 (426)
Q Consensus 274 ~~~~~l~~~~~~l~~~Gad~I~l~D--T~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD 351 (426)
.+++.+.+.++.+.+.|+..|.|.- +.-...++.+.++++.+++.+|. +.+|. ..+.......--++|++.++
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~--i~i~~---g~lt~e~l~~Lk~aGv~r~~ 178 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSS--VSIEV---QPLSEEEYAELVELGLDGVT 178 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCC--ceecc---CCCCHHHHHHHHHcCCCEEE
Confidence 3566666666666666666666642 22223445666666666665553 22221 22322222233366666655
Q ss_pred ecccC
Q 014369 352 CSVAG 356 (426)
Q Consensus 352 ~Sv~G 356 (426)
..+--
T Consensus 179 i~lET 183 (371)
T PRK09240 179 VYQET 183 (371)
T ss_pred EEEec
Confidence 54443
No 472
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=85.99 E-value=23 Score=32.77 Aligned_cols=109 Identities=12% Similarity=0.118 Sum_probs=64.1
Q ss_pred hhHHHHHHcCCCEEEEe------ccCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-cCCcEEEEEEeeecCCCCCCCCHH
Q 014369 205 KGFEAAIAAGAKEVAIF------ASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEGAIPPS 277 (426)
Q Consensus 205 ~di~~a~~~Gv~~V~i~------~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~-~G~~v~~~v~~~fg~pd~~r~~~~ 277 (426)
+.++.+.+.|++.|++- ++.+. ..+ +.++..++ ...++.+.++.. +++
T Consensus 15 ~~~~~~~~~g~d~i~~~~~Dg~~~~~~~------------~~~----~~v~~i~~~~~~~v~v~lm~~---------~~~ 69 (210)
T TIGR01163 15 EEVKAVEEAGADWIHVDVMDGHFVPNLT------------FGP----PVLEALRKYTDLPIDVHLMVE---------NPD 69 (210)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCcc------------cCH----HHHHHHHhcCCCcEEEEeeeC---------CHH
Confidence 56778889999999993 33111 112 22333332 234554445531 233
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 278 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 278 ~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
++++.+.++|+|.|.+.+- .+......++.+++.-....+.+..|+. ...+.++..++++|
T Consensus 70 ---~~~~~~~~~gadgv~vh~~----~~~~~~~~~~~~~~~g~~~~~~~~~~t~-----~e~~~~~~~~~d~i 130 (210)
T TIGR01163 70 ---RYIEDFAEAGADIITVHPE----ASEHIHRLLQLIKDLGAKAGIVLNPATP-----LEFLEYVLPDVDLV 130 (210)
T ss_pred ---HHHHHHHHcCCCEEEEccC----CchhHHHHHHHHHHcCCcEEEEECCCCC-----HHHHHHHHhhCCEE
Confidence 3466777999999999762 2455566667766653333466666654 44556666778865
No 473
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=85.98 E-value=13 Score=37.97 Aligned_cols=16 Identities=6% Similarity=-0.203 Sum_probs=7.5
Q ss_pred ChhhHHHHHHHHHHHh
Q 014369 389 DLRKLMLAGDFINKHL 404 (426)
Q Consensus 389 Dl~~L~~la~~v~~~~ 404 (426)
....+.++.+.+.+.+
T Consensus 171 ~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 171 LPEDVRDRVRALRAAL 186 (337)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 4444554444544444
No 474
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=85.90 E-value=15 Score=36.56 Aligned_cols=159 Identities=17% Similarity=0.126 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHhCC-CCeEEEe--cCCCCC-ccccccCHHHHHHHhHhc---CCCcEEE-EeCChhh----HHHHHH
Q 014369 145 VPTGVKVELIRRLVSSG-LPVVEAT--SFVSPK-WVPQLADARDVMEAVRDL---EGARLPV-LTPNLKG----FEAAIA 212 (426)
Q Consensus 145 f~~~~ki~I~~~L~~~G-v~~IEvG--~~~s~~-~~p~~~D~~~v~~~i~~~---~~~~l~~-l~~~~~d----i~~a~~ 212 (426)
.+.++-.+.++.+.++| ++.||+- .|..+. ...-..+.+.+.+.++.+ -+..+.+ +.++..+ ++.+.+
T Consensus 101 ~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~ 180 (301)
T PRK07259 101 STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEE 180 (301)
T ss_pred CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHH
Confidence 36788899999999999 9999994 232221 111113344444444433 2333333 3344433 355677
Q ss_pred cCCCEEEEeccCChH--HHh-------hhc-CCCHHHHHHHHHHHHHHHHh-cCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369 213 AGAKEVAIFASASEA--FSK-------SNI-NCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEGAIPPSKVAY 281 (426)
Q Consensus 213 ~Gv~~V~i~~~~Sd~--~~~-------~~~-~~s~~e~l~~~~~~v~~Ak~-~G~~v~~~v~~~fg~pd~~r~~~~~l~~ 281 (426)
+|++.|.++-.+... +.+ ... +.+-........+.+..+++ .+++|.+ ..+-.+++.+.+
T Consensus 181 ~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~---------~GGI~~~~da~~ 251 (301)
T PRK07259 181 AGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIG---------MGGISSAEDAIE 251 (301)
T ss_pred cCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEE---------ECCCCCHHHHHH
Confidence 899988775322110 000 000 01100000011233333333 2565541 123456766555
Q ss_pred HHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014369 282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMA 317 (426)
Q Consensus 282 ~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~ 317 (426)
+. .+|||.|.++=..=. .|.-+.++.+.+.+
T Consensus 252 ~l----~aGAd~V~igr~ll~-~P~~~~~i~~~l~~ 282 (301)
T PRK07259 252 FI----MAGASAVQVGTANFY-DPYAFPKIIEGLEA 282 (301)
T ss_pred HH----HcCCCceeEcHHHhc-CcHHHHHHHHHHHH
Confidence 44 479988887755433 67777777666644
No 475
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=85.85 E-value=20 Score=37.08 Aligned_cols=136 Identities=15% Similarity=0.056 Sum_probs=79.6
Q ss_pred HHHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc-CC--cEEEEEEeeecCCCCCC
Q 014369 207 FEAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-SI--PVRGYVSCVVGCPVEGA 273 (426)
Q Consensus 207 i~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~--~v~~~v~~~fg~pd~~r 273 (426)
.++|.++|.|.|.|...- |+. ++...+|-+.++=...+.++++.+|+. |. .|.+-++..-..+..+-
T Consensus 156 A~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~ 235 (370)
T cd02929 156 ALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGI 235 (370)
T ss_pred HHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCC
Confidence 356678999988886442 333 333456778888888888888888875 53 34444442111111122
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCC---------C-HHHHHHHHHHHHHhcCCceEEEE-eCCCcCcHHHHHHHH
Q 014369 274 IPPSKVAYVAKELHDMGCFEISLGDTIGVG---------T-PGTVVPMLEAVMAVVPVEKLAVH-LHDTYGQSLPNILIS 342 (426)
Q Consensus 274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~---------~-P~~v~~li~~l~~~~p~~~i~~H-~HNd~GlA~ANaLaA 342 (426)
.+++...++++.+.+. +|.|.+. .|.. . +....++++.+++.+.. ++..- ..+ ....+..+
T Consensus 236 ~~~~e~~~~~~~l~~~-~D~i~vs--~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-pvi~~G~i~----~~~~~~~~ 307 (370)
T cd02929 236 ESEGEGVEFVEMLDEL-PDLWDVN--VGDWANDGEDSRFYPEGHQEPYIKFVKQVTSK-PVVGVGRFT----SPDKMVEV 307 (370)
T ss_pred CCHHHHHHHHHHHHhh-CCEEEec--CCCccccccccccCCccccHHHHHHHHHHCCC-CEEEeCCCC----CHHHHHHH
Confidence 4678888888888765 5766552 2211 1 11224567778887754 33332 222 23567778
Q ss_pred HHcC-CCEE
Q 014369 343 LQMG-ISTV 350 (426)
Q Consensus 343 l~aG-a~~V 350 (426)
++.| +|.|
T Consensus 308 l~~g~~D~V 316 (370)
T cd02929 308 VKSGILDLI 316 (370)
T ss_pred HHcCCCCee
Confidence 8877 7765
No 476
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=85.82 E-value=39 Score=33.51 Aligned_cols=182 Identities=16% Similarity=0.132 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHhC----CCCeEEEecCC-----CCCcc--ccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcC
Q 014369 146 PTGVKVELIRRLVSS----GLPVVEATSFV-----SPKWV--PQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAG 214 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~----Gv~~IEvG~~~-----s~~~~--p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~G 214 (426)
+.++..++++.|.++ |+..+==|+|- +|... +.+.+.=.+++.+++--+..+..=+-...+++.+.+.
T Consensus 14 s~e~~~~~A~~lk~~~~~~~~~~~fk~sf~KapRTsp~sFqG~G~eeGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~- 92 (258)
T TIGR01362 14 SEDHALRVAEKLKELTSKLGVPFIFKSSFDKANRSSIHSFRGPGLEEGLKILQKVKEEFGVPILTDVHESSQCEPVAEV- 92 (258)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhh-
Confidence 567788999999885 55544444332 22222 1111222334444433445544444567888888877
Q ss_pred CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 014369 215 AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI 294 (426)
Q Consensus 215 v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I 294 (426)
+|.+.|... +..+ -++++.+.+.|..|- |-. .--.++++....++.+...|-+.|
T Consensus 93 vDilQIgAr-----n~rn------------~~LL~a~g~t~kpV~--lKr------G~~~t~~e~l~aaeyi~~~Gn~~v 147 (258)
T TIGR01362 93 VDIIQIPAF-----LCRQ------------TDLLVAAAKTGRIVN--VKK------GQFLSPWDMKNVVEKVLSTGNKNI 147 (258)
T ss_pred CcEEEeCch-----hcch------------HHHHHHHhccCCeEE--ecC------CCcCCHHHHHHHHHHHHHcCCCcE
Confidence 899998642 2211 155666666677664 221 112578888899999999999988
Q ss_pred EEcC---CCCCCC-HHHHHHHHHHHHH-hcCCceEEE-Ee-----------CCCcCcHHHHHHHHHHcCCCEEeeccc
Q 014369 295 SLGD---TIGVGT-PGTVVPMLEAVMA-VVPVEKLAV-HL-----------HDTYGQSLPNILISLQMGISTVDCSVA 355 (426)
Q Consensus 295 ~l~D---T~G~~~-P~~v~~li~~l~~-~~p~~~i~~-H~-----------HNd~GlA~ANaLaAl~aGa~~VD~Sv~ 355 (426)
.|+. |.|+.. -.++.. +..+++ .+|.+ +.. |. =-+.-+-.+-+.+|+.+|||.+=.=+.
T Consensus 148 iLcERG~tf~y~r~~~D~~~-ip~~k~~~~PVi-~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEvH 223 (258)
T TIGR01362 148 LLCERGTSFGYNNLVVDMRS-LPIMRELGCPVI-FDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMETH 223 (258)
T ss_pred EEEeCCCCcCCCCcccchhh-hHHHHhcCCCEE-EeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 8886 333311 112222 223333 24531 222 65 334556678999999999996544333
No 477
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=85.82 E-value=4.5 Score=41.29 Aligned_cols=105 Identities=11% Similarity=0.016 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcCCC-CCCCHHHHHHHH---HHH
Q 014369 241 LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTI-GVGTPGTVVPML---EAV 315 (426)
Q Consensus 241 l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~DT~-G~~~P~~v~~li---~~l 315 (426)
|-.++++.+.|++.++-|-+ |.+ .+.+.+..+++++.+.+.. +|.+.... .+.-+..+..++ ..+
T Consensus 9 lv~~k~lL~~A~~~~yAV~A-----fN~-----~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~ 78 (321)
T PRK07084 9 LVNTREMFAKAVKGGYAIPA-----YNF-----NNMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEY 78 (321)
T ss_pred ccCHHHHHHHHHHCCceEEE-----EEe-----CCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHH
Confidence 45567888999999987753 321 3578999999999999876 55554433 222222233344 444
Q ss_pred HHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCC
Q 014369 316 MAVVP-VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGL 357 (426)
Q Consensus 316 ~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~Gl 357 (426)
.+... .+|+.+| =|.|.-......|+++|.+ .+|+|-..+
T Consensus 79 a~~a~~~VPV~lH--LDHg~~~e~i~~ai~~GftSVMiD~S~lp~ 121 (321)
T PRK07084 79 AKELGCPIPIVLH--LDHGDSFELCKDCIDSGFSSVMIDGSHLPY 121 (321)
T ss_pred HHHcCCCCcEEEE--CCCCCCHHHHHHHHHcCCCEEEeeCCCCCH
Confidence 44331 2356655 5668888999999999998 669886543
No 478
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=85.75 E-value=9.5 Score=37.17 Aligned_cols=175 Identities=17% Similarity=0.158 Sum_probs=103.3
Q ss_pred HHHHHHHhCCCCeEEEecCCCCCcc-ccccCHHHHHHHhHhcCCCcEEEEeCC---------------hhhHHHHHHcCC
Q 014369 152 ELIRRLVSSGLPVVEATSFVSPKWV-PQLADARDVMEAVRDLEGARLPVLTPN---------------LKGFEAAIAAGA 215 (426)
Q Consensus 152 ~I~~~L~~~Gv~~IEvG~~~s~~~~-p~~~D~~~v~~~i~~~~~~~l~~l~~~---------------~~di~~a~~~Gv 215 (426)
+-+....+.|.++||+=.-.+..+. |. .=++..+.+..++.+.+++|. ++||+.+.++|+
T Consensus 12 ~~l~~A~~~GAdRiELC~~La~GG~TPS----yG~~k~a~~~~~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~ 87 (241)
T COG3142 12 EGLLAAQAAGADRIELCDALAEGGLTPS----YGVIKEAVELSKIPVYVMIRPRGGDFVYSDDELEIMLEDIRLARELGV 87 (241)
T ss_pred hhHHHHHHcCCceeehhhccccCCCCCC----HHHHHHHHhhcCCceEEEEecCCCCcccChHHHHHHHHHHHHHHHcCC
Confidence 4456678899999999532211111 11 223444444466777777741 258999999999
Q ss_pred CEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 014369 216 KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS 295 (426)
Q Consensus 216 ~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~ 295 (426)
+.|.+-....+-..- +++++++++.|.. +.|. +=.+| |.. .|| .+..+.+.++|+.+|-
T Consensus 88 ~GVV~G~lt~dg~iD----------~~~le~Li~aA~g--L~vT--FHrAF---D~~-~d~---~~ale~li~~Gv~RIL 146 (241)
T COG3142 88 QGVVLGALTADGNID----------MPRLEKLIEAAGG--LGVT--FHRAF---DEC-PDP---LEALEQLIELGVERIL 146 (241)
T ss_pred CcEEEeeecCCCccC----------HHHHHHHHHHccC--Ccee--eehhh---hhc-CCH---HHHHHHHHHCCCcEEe
Confidence 999888766553211 4556777777764 4444 22334 222 233 3466788899998765
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHH-HHcCCCEEeecccC
Q 014369 296 LGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS-LQMGISTVDCSVAG 356 (426)
Q Consensus 296 l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaA-l~aGa~~VD~Sv~G 356 (426)
= +-|..++.+-..+++.+.+...+ +|.+=. --|.-..|...- ...|++.+|+|-..
T Consensus 147 T--sGg~~sa~eg~~~l~~li~~a~g-ri~Im~--GaGV~~~N~~~l~~~tg~~e~H~s~~~ 203 (241)
T COG3142 147 T--SGGKASALEGLDLLKRLIEQAKG-RIIIMA--GAGVRAENIAELVLLTGVTEVHGSAGV 203 (241)
T ss_pred c--CCCcCchhhhHHHHHHHHHHhcC-CEEEEe--CCCCCHHHHHHHHHhcCchhhhhcccc
Confidence 2 34456666666666666655422 122211 123334555444 68899999999876
No 479
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=85.71 E-value=18 Score=35.24 Aligned_cols=74 Identities=11% Similarity=-0.002 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCC-CCCCCH-------HHHHHHHHHHHhCCCCEEEEc--CCCCCCCHH
Q 014369 237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-EGAIPP-------SKVAYVAKELHDMGCFEISLG--DTIGVGTPG 306 (426)
Q Consensus 237 ~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd-~~r~~~-------~~l~~~~~~l~~~Gad~I~l~--DT~G~~~P~ 306 (426)
+++.++.+++.++.|+++|.++.. + ++... ....+. +.+.++++.+.+.|+. |.|- ++.=..++.
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~-~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~-l~lE~~~~~~~~t~~ 163 (279)
T TIGR00542 89 RQQGLEIMEKAIQLARDLGIRTIQ-L---AGYDVYYEEHDEETRRRFREGLKEAVELAARAQVT-LAVEIMDTPFMSSIS 163 (279)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEE-e---cCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCE-EEEeeCCCchhcCHH
Confidence 456788999999999999998542 2 22111 011112 3455667777777873 3333 222234556
Q ss_pred HHHHHHHHH
Q 014369 307 TVVPMLEAV 315 (426)
Q Consensus 307 ~v~~li~~l 315 (426)
++.++++.+
T Consensus 164 ~~~~li~~v 172 (279)
T TIGR00542 164 KWLKWDHYL 172 (279)
T ss_pred HHHHHHHHc
Confidence 666655444
No 480
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=85.68 E-value=26 Score=36.02 Aligned_cols=148 Identities=20% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHhCCCCeEEEe------cCCCCCccc-cccCHHHHHHHhHhcCCCcEEE-------EeCChhhH-----HHHHHcC
Q 014369 154 IRRLVSSGLPVVEAT------SFVSPKWVP-QLADARDVMEAVRDLEGARLPV-------LTPNLKGF-----EAAIAAG 214 (426)
Q Consensus 154 ~~~L~~~Gv~~IEvG------~~~s~~~~p-~~~D~~~v~~~i~~~~~~~l~~-------l~~~~~di-----~~a~~~G 214 (426)
++.++++||+.|=+| ..-.+...| .+.+--...+.+++..+..+.+ ...+.++. +...++|
T Consensus 48 A~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaG 127 (332)
T PLN02424 48 AVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLKEGG 127 (332)
T ss_pred HHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhC
Q ss_pred CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEee------ecC---CCCCCCCHHHHHHHHHH
Q 014369 215 AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV------VGC---PVEGAIPPSKVAYVAKE 285 (426)
Q Consensus 215 v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~------fg~---pd~~r~~~~~l~~~~~~ 285 (426)
++-|.| |.......+.|+...+.|++|.++|-.. +|. -..+......+.+-+++
T Consensus 128 a~aVKl-----------------EGg~~~~~~~I~~l~~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~a 190 (332)
T PLN02424 128 MDAVKL-----------------EGGSPSRVTAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALA 190 (332)
T ss_pred CcEEEE-----------------CCCcHHHHHHHHHHHHcCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHH
Q ss_pred HHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEE
Q 014369 286 LHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV 326 (426)
Q Consensus 286 l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~ 326 (426)
+.++||+.|.|. +.|.. +.+.+.+.++...|++
T Consensus 191 le~AGAf~ivLE-----~Vp~~---la~~It~~l~IPtIGI 223 (332)
T PLN02424 191 LQEAGCFAVVLE-----CVPAP---VAAAITSALQIPTIGI 223 (332)
T ss_pred HHHcCCcEEEEc-----CCcHH---HHHHHHHhCCCCEEee
No 481
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=85.57 E-value=53 Score=34.83 Aligned_cols=158 Identities=11% Similarity=0.058 Sum_probs=98.1
Q ss_pred CCCCHHHHHHHHHHHHh-CCCCeEEEecCCCCCccccc-cC--HHHHHHHhHhcCCCcEE-EEeC------C---hhhHH
Q 014369 143 NTVPTGVKVELIRRLVS-SGLPVVEATSFVSPKWVPQL-AD--ARDVMEAVRDLEGARLP-VLTP------N---LKGFE 208 (426)
Q Consensus 143 ~~f~~~~ki~I~~~L~~-~Gv~~IEvG~~~s~~~~p~~-~D--~~~v~~~i~~~~~~~l~-~l~~------~---~~di~ 208 (426)
..++.++..+++..+.+ .+|..|-++-. . |-+ .| .+.+++.++.+|.++.. ..++ . .+-++
T Consensus 136 ~~ls~eei~~~i~yI~~~p~I~~VlLSGG-D----PLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~P~RIT~ell~ 210 (417)
T TIGR03820 136 SIPSKEQILEGIEYIRNTPQIRDVLLSGG-D----PLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVLPQRITDELVA 210 (417)
T ss_pred ccCCHHHHHHHHHHHHhcCCCCEEEEeCC-c----cccCChHHHHHHHHHHhhcCCCceEEEeeccccccccccCHHHHH
Confidence 35688888888888887 48877666421 1 211 22 24445666667766522 2222 1 12334
Q ss_pred HHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh
Q 014369 209 AAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD 288 (426)
Q Consensus 209 ~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~ 288 (426)
...+.+. +.+.++.+- ..|..+.+.++++..++.|+.+...-...-|- --+++.+.++.+.+.+
T Consensus 211 ~Lk~~~~--~~v~~h~nh----------p~Eit~~a~~Al~~L~~aGI~l~nQsVLLkGV----ND~~~~l~~L~~~L~~ 274 (417)
T TIGR03820 211 ILKKHHP--VWLNTHFNH----------PREITASSKKALAKLADAGIPLGNQSVLLAGV----NDCPRIMKKLVHKLVA 274 (417)
T ss_pred HHHhcCC--eEEEEeCCC----------hHhChHHHHHHHHHHHHcCCEEEeeceEECCc----CCCHHHHHHHHHHHHH
Confidence 4445553 444333322 13456777888999999999876422221121 2368889999999999
Q ss_pred CCC--CEEEEcCCCCCCC----H-HHHHHHHHHHHHhcCC
Q 014369 289 MGC--FEISLGDTIGVGT----P-GTVVPMLEAVMAVVPV 321 (426)
Q Consensus 289 ~Ga--d~I~l~DT~G~~~----P-~~v~~li~~l~~~~p~ 321 (426)
+|+ .-++.+|-+.... | .+..++++.++.+.++
T Consensus 275 ~gV~PYYl~~~d~v~G~~hFrv~~~~g~~I~~~lr~~~sG 314 (417)
T TIGR03820 275 NRVRPYYLYQCDLSEGLSHFRTPVGKGIEIIESLIGHTSG 314 (417)
T ss_pred CCCeeceeeeccCCCCcccccCcHHHHHHHHHHHHHhCCC
Confidence 996 5888899765432 2 5668999999998764
No 482
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=85.53 E-value=5.7 Score=39.89 Aligned_cols=124 Identities=9% Similarity=0.044 Sum_probs=83.4
Q ss_pred HHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC---CCEEEEcCCCC--------CCCHHHHHHHHHH
Q 014369 246 AVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG---CFEISLGDTIG--------VGTPGTVVPMLEA 314 (426)
Q Consensus 246 ~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G---ad~I~l~DT~G--------~~~P~~v~~li~~ 314 (426)
++|+.++..+..++ |. .+|=+..-+..+.+.+...| .+++.|.|++= ....+.+.+-++.
T Consensus 112 ~~V~~~~~~~~~~~--I~-------~TRKT~Pg~R~l~k~AV~~GGg~~HR~gLsd~vLikdNHi~~~g~~~~i~~av~~ 182 (284)
T PRK06096 112 QMLALLRERYPDGN--IA-------CTRKAIPGTRLLATQAVLAAGGLIHRAGCAETILLFANHRHFLHDPQDWSGAINQ 182 (284)
T ss_pred HHHHHHHhhCCCcE--EE-------ecCcCCCchhHHHHHHHHcCCCcCccCCcchhhhhHHHHHHHhCCcccHHHHHHH
Confidence 55677776666655 22 24544556667777777776 46999999981 1123457788999
Q ss_pred HHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhC-----C----CC
Q 014369 315 VMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL-----G----VE 385 (426)
Q Consensus 315 l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~l-----G----~~ 385 (426)
+|+..|..+|++-+- -+.-+..|+++|||+|-. .|.+.|++-.+.+.+ + ..
T Consensus 183 ~r~~~~~~kIeVEv~-----tleqa~ea~~agaDiI~L---------------Dn~~~e~l~~av~~~~~~~~~~~leaS 242 (284)
T PRK06096 183 LRRHAPEKKIVVEAD-----TPKEAIAALRAQPDVLQL---------------DKFSPQQATEIAQIAPSLAPHCTLSLA 242 (284)
T ss_pred HHHhCCCCCEEEECC-----CHHHHHHHHHcCCCEEEE---------------CCCCHHHHHHHHHHhhccCCCeEEEEE
Confidence 999888666777774 567788899999999854 456666665554432 1 12
Q ss_pred CCcChhhHHHHHH
Q 014369 386 TNVDLRKLMLAGD 398 (426)
Q Consensus 386 ~~iDl~~L~~la~ 398 (426)
.||+++.+.+.+.
T Consensus 243 GGI~~~ni~~yA~ 255 (284)
T PRK06096 243 GGINLNTLKNYAD 255 (284)
T ss_pred CCCCHHHHHHHHh
Confidence 4789988887665
No 483
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=85.50 E-value=26 Score=36.77 Aligned_cols=161 Identities=16% Similarity=0.068 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCCeEEE--ecCC----CCCccccccCHHHHHHHhHhcCC-CcEEEEe---CChhhH----HHHH
Q 014369 146 PTGVKVELIRRLVSSGLPVVEA--TSFV----SPKWVPQLADARDVMEAVRDLEG-ARLPVLT---PNLKGF----EAAI 211 (426)
Q Consensus 146 ~~~~ki~I~~~L~~~Gv~~IEv--G~~~----s~~~~p~~~D~~~v~~~i~~~~~-~~l~~l~---~~~~di----~~a~ 211 (426)
+.++-.++++.+.++|++.||+ +.|. ......-..|++.+.+.++.+.. +.+.+++ ++..++ +.+.
T Consensus 111 ~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~ 190 (420)
T PRK08318 111 NEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAK 190 (420)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHH
Q ss_pred HcCCCEEEEeccCCh--------------HHHhhhc-CCCHHHHHHHHHHHHHHHHhc----CCcEEEEEEeeecCCCCC
Q 014369 212 AAGAKEVAIFASASE--------------AFSKSNI-NCSIEDSLVRYRAVAHAAKVL----SIPVRGYVSCVVGCPVEG 272 (426)
Q Consensus 212 ~~Gv~~V~i~~~~Sd--------------~~~~~~~-~~s~~e~l~~~~~~v~~Ak~~----G~~v~~~v~~~fg~pd~~ 272 (426)
++|++.|.++-.+.. +|.+... +.|=.-......+.|..+++. .+.+.+ ..+
T Consensus 191 ~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig---------~GG 261 (420)
T PRK08318 191 RGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISG---------IGG 261 (420)
T ss_pred HCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEe---------ecC
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc
Q 014369 273 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV 319 (426)
Q Consensus 273 r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~ 319 (426)
-.+.+++.+... +||+.|-++=..-.--|.-+.++++.+.+.+
T Consensus 262 I~s~~da~e~i~----aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l 304 (420)
T PRK08318 262 IETWRDAAEFIL----LGAGTVQVCTAAMQYGFRIVEDMISGLSHYM 304 (420)
T ss_pred cCCHHHHHHHHH----hCCChheeeeeeccCCchhHHHHHHHHHHHH
No 484
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=85.45 E-value=30 Score=36.12 Aligned_cols=94 Identities=16% Similarity=0.047 Sum_probs=62.3
Q ss_pred CcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCC--CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC
Q 014369 195 ARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINC--SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC 268 (426)
Q Consensus 195 ~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~--s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~ 268 (426)
..+++=+ | +.+.++...++|+.+|.+.+..-+-..-..+|+ +.++ +.++++.+++.+..+.+.++ +|.
T Consensus 98 ~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~~~~----~~~ai~~~~~~~~~v~~DlI--~Gl 171 (390)
T PRK06582 98 TEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHDCMQ----AIKTIEAANTIFPRVSFDLI--YAR 171 (390)
T ss_pred CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCCHHH----HHHHHHHHHHhCCcEEEEee--cCC
Confidence 4555544 3 246678888899999999885443333344555 4444 44566677777767777776 677
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369 269 PVEGAIPPSKVAYVAKELHDMGCFEISLG 297 (426)
Q Consensus 269 pd~~r~~~~~l~~~~~~l~~~Gad~I~l~ 297 (426)
|.. +.+.+.+-++.+.+++++.|++=
T Consensus 172 Pgq---t~e~~~~~l~~~~~l~p~his~y 197 (390)
T PRK06582 172 SGQ---TLKDWQEELKQAMQLATSHISLY 197 (390)
T ss_pred CCC---CHHHHHHHHHHHHhcCCCEEEEe
Confidence 754 45677777778888998877653
No 485
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=85.43 E-value=11 Score=35.83 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=67.7
Q ss_pred eCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369 201 TPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA 280 (426)
Q Consensus 201 ~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~ 280 (426)
+|+.++++..+++|++.|.+=....+ +. +.+.+++++.|+.+..+.+.+ .+.|+
T Consensus 51 TPT~~ev~~l~~aGadIIAlDaT~R~----------Rp---~~l~~li~~i~~~~~l~MADi-----------st~ee-- 104 (192)
T PF04131_consen 51 TPTLKEVDALAEAGADIIALDATDRP----------RP---ETLEELIREIKEKYQLVMADI-----------STLEE-- 104 (192)
T ss_dssp S-SHHHHHHHHHCT-SEEEEE-SSSS-----------S---S-HHHHHHHHHHCTSEEEEE------------SSHHH--
T ss_pred CCCHHHHHHHHHcCCCEEEEecCCCC----------CC---cCHHHHHHHHHHhCcEEeeec-----------CCHHH--
Confidence 35678999999999999998543221 22 445677888888883333222 22333
Q ss_pred HHHHHHHhCCCCEEEE------cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 281 YVAKELHDMGCFEISL------GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 281 ~~~~~l~~~Gad~I~l------~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
++.+.++|+|.|.- .+|.+ -.| =.+|++.+.+. . .++-.-+|-+ -...+..|+++||..|
T Consensus 105 --~~~A~~~G~D~I~TTLsGYT~~t~~-~~p--D~~lv~~l~~~-~-~pvIaEGri~---tpe~a~~al~~GA~aV 170 (192)
T PF04131_consen 105 --AINAAELGFDIIGTTLSGYTPYTKG-DGP--DFELVRELVQA-D-VPVIAEGRIH---TPEQAAKALELGAHAV 170 (192)
T ss_dssp --HHHHHHTT-SEEE-TTTTSSTTSTT-SSH--HHHHHHHHHHT-T-SEEEEESS-----SHHHHHHHHHTT-SEE
T ss_pred --HHHHHHcCCCEEEcccccCCCCCCC-CCC--CHHHHHHHHhC-C-CcEeecCCCC---CHHHHHHHHhcCCeEE
Confidence 55677899999864 56666 233 24677777765 3 3555544432 2467789999999865
No 486
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=85.40 E-value=15 Score=36.78 Aligned_cols=77 Identities=16% Similarity=0.237 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCCC-CCCHHHHHHHHHHHHHhcCCceEEEEeC---------CCcCcHHHHHHHH
Q 014369 273 AIPPSKVAYVAKELHDMGCFEISLGDTIG-VGTPGTVVPMLEAVMAVVPVEKLAVHLH---------DTYGQSLPNILIS 342 (426)
Q Consensus 273 r~~~~~l~~~~~~l~~~Gad~I~l~DT~G-~~~P~~v~~li~~l~~~~p~~~i~~H~H---------Nd~GlA~ANaLaA 342 (426)
..+++.+.+.++.+.+.|+.+|.|.+-.. ...++.+.++++.+++..|. +.+|+= ...|+...-.+..
T Consensus 35 ~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~--i~~~~~s~~e~~~~~~~~g~~~~e~l~~ 112 (309)
T TIGR00423 35 VLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPD--VHIHAFSPMEVYFLAKNEGLSIEEVLKR 112 (309)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCC--ceEEecCHHHHHHHHHHcCCCHHHHHHH
Confidence 46899999999999999999999984322 24567789999999998774 444421 2456666666666
Q ss_pred H-HcCCCEEe
Q 014369 343 L-QMGISTVD 351 (426)
Q Consensus 343 l-~aGa~~VD 351 (426)
+ +||++.+.
T Consensus 113 LkeAGl~~i~ 122 (309)
T TIGR00423 113 LKKAGLDSMP 122 (309)
T ss_pred HHHcCCCcCC
Confidence 6 67998774
No 487
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=85.34 E-value=38 Score=32.96 Aligned_cols=179 Identities=17% Similarity=0.173 Sum_probs=107.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--C---C-----hhhHHHHHH
Q 014369 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P---N-----LKGFEAAIA 212 (426)
Q Consensus 143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---~-----~~di~~a~~ 212 (426)
...+.++..+++..-.+.|+..+-+ +|.|+|. ..+.++.-...++...+ | + ....+.|++
T Consensus 19 ~~~T~~~I~~l~~eA~~~~f~avCV----~P~~V~~------A~~~l~g~~~~~v~tVigFP~G~~~t~~K~~Ea~~ai~ 88 (228)
T COG0274 19 PDATEEDIARLCAEAKEYGFAAVCV----NPSYVPL------AKEALKGSTVVRVCTVIGFPLGANTTAVKAAEAREAIE 88 (228)
T ss_pred CCCCHHHHHHHHHHHHhhCceEEEE----CcchHHH------HHHHhccCCCeEEEEecCCCCCCChHHHHHHHHHHHHH
Confidence 3567788888888888888766554 4555542 12233321123344433 3 1 135677889
Q ss_pred cCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369 213 AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF 292 (426)
Q Consensus 213 ~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad 292 (426)
.|+++|.+.++.... .....+...+.++.+++.+..+ ..+-+-+. ....+.+.....++.+.++|+|
T Consensus 89 ~GAdEiDmVinig~~-----k~g~~~~V~~eI~~v~~a~~~~-~~lKVIlE-------t~~Lt~ee~~~A~~i~~~aGAd 155 (228)
T COG0274 89 NGADEIDMVINIGAL-----KSGNWEAVEREIRAVVEACADA-VVLKVILE-------TGLLTDEEKRKACEIAIEAGAD 155 (228)
T ss_pred cCCCeeeeeeeHHHH-----hcCCHHHHHHHHHHHHHHhCCC-ceEEEEEe-------ccccCHHHHHHHHHHHHHhCCC
Confidence 999999999875442 2335667777788888888775 33332222 1235566778899999999999
Q ss_pred EEEEcC--CCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369 293 EISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350 (426)
Q Consensus 293 ~I~l~D--T~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V 350 (426)
-|-=.= +.|-++++++.-|.+.+... +++-.----.. ..-+++-+++|+.+|
T Consensus 156 FVKTSTGf~~~gAT~edv~lM~~~vg~~-----vgvKaSGGIrt-~eda~~~i~aga~Ri 209 (228)
T COG0274 156 FVKTSTGFSAGGATVEDVKLMKETVGGR-----VGVKASGGIRT-AEDAKAMIEAGATRI 209 (228)
T ss_pred EEEcCCCCCCCCCCHHHHHHHHHHhccC-----ceeeccCCcCC-HHHHHHHHHHhHHHh
Confidence 654221 24677888888777776433 33322211111 245566677887655
No 488
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=85.33 E-value=37 Score=33.03 Aligned_cols=141 Identities=13% Similarity=0.064 Sum_probs=82.5
Q ss_pred HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCC--cEE-EEeCC--hhhHHHHHHcCCCEEEEeccCC
Q 014369 151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGA--RLP-VLTPN--LKGFEAAIAAGAKEVAIFASAS 225 (426)
Q Consensus 151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~--~l~-~l~~~--~~di~~a~~~Gv~~V~i~~~~S 225 (426)
.++++.+.++|.+.|-+=+=+. .+..+.++.+++. +. +.. ++.|. .+.++..+. -+|.|-+. ++.
T Consensus 81 ~~~i~~~~~aGad~It~H~Ea~-------~~~~~~l~~Ik~~-g~~~kaGlalnP~Tp~~~i~~~l~-~vD~VLiM-tV~ 150 (228)
T PRK08091 81 FEVAKACVAAGADIVTLQVEQT-------HDLALTIEWLAKQ-KTTVLIGLCLCPETPISLLEPYLD-QIDLIQIL-TLD 150 (228)
T ss_pred HHHHHHHHHhCCCEEEEcccCc-------ccHHHHHHHHHHC-CCCceEEEEECCCCCHHHHHHHHh-hcCEEEEE-EEC
Confidence 4577888888988776533111 2344555556542 33 443 34453 466766655 36776665 455
Q ss_pred hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCH
Q 014369 226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTP 305 (426)
Q Consensus 226 d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P 305 (426)
+-|.-.++ .++++++++++-++.+++|+.+...+ |++ .+.+ -++.+.++|||.+... |. ++.-
T Consensus 151 PGfgGQ~f---~~~~l~KI~~lr~~~~~~~~~~~IeV-------DGG-I~~~----ti~~l~~aGaD~~V~G-Sa-lF~~ 213 (228)
T PRK08091 151 PRTGTKAP---SDLILDRVIQVENRLGNRRVEKLISI-------DGS-MTLE----LASYLKQHQIDWVVSG-SA-LFSQ 213 (228)
T ss_pred CCCCCccc---cHHHHHHHHHHHHHHHhcCCCceEEE-------ECC-CCHH----HHHHHHHCCCCEEEEC-hh-hhCC
Confidence 54443332 45788888888888888887643211 333 4444 4556778999988776 32 4432
Q ss_pred HHHHHHHHHHHHh
Q 014369 306 GTVVPMLEAVMAV 318 (426)
Q Consensus 306 ~~v~~li~~l~~~ 318 (426)
.+..+.++.++..
T Consensus 214 ~d~~~~i~~l~~~ 226 (228)
T PRK08091 214 GELKTTLKEWKSS 226 (228)
T ss_pred CCHHHHHHHHHHh
Confidence 3466667776653
No 489
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=85.27 E-value=16 Score=36.65 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=45.0
Q ss_pred HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEe
Q 014369 151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIF 221 (426)
Q Consensus 151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~ 221 (426)
..=++.|.++|+|+|+.+--..| .++....++..-+..+.+=++|+.+..++.+.|++.|+--
T Consensus 79 ~~Ea~~L~~~GvDiIDeTe~lrP--------ade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt 141 (287)
T TIGR00343 79 FVEAQILEALGVDYIDESEVLTP--------ADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTK 141 (287)
T ss_pred HHHHHHHHHcCCCEEEccCCCCc--------HHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEecc
Confidence 45578899999999974432222 3566666664335666666789988888999999999875
No 490
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=85.26 E-value=6.7 Score=39.20 Aligned_cols=125 Identities=11% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC---CCEEEEcCC----------CCCCCHHHHH
Q 014369 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG---CFEISLGDT----------IGVGTPGTVV 309 (426)
Q Consensus 243 ~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G---ad~I~l~DT----------~G~~~P~~v~ 309 (426)
...++|+.+++.+..+++ ..+|=+...+..+.+.+...| .+++.|.|+ .|.. +.+.
T Consensus 108 ~T~~~V~~~~~~~~~~~I---------~~TRKT~Pg~R~l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~--~~i~ 176 (277)
T TIGR01334 108 YTHKMVTLAKKISPMAVV---------ACTRKAIPLTRPLAVKAVLAAGGVIHRIGLSETLLVFANHRTFLNDN--FDWG 176 (277)
T ss_pred HHHHHHHHHHhcCCCCEE---------EecCCCCCChhHHHHHHHHhCCCcCeecCCchhheehHHHHHHhCCc--ccHH
Q ss_pred HHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhC-------
Q 014369 310 PMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL------- 382 (426)
Q Consensus 310 ~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~l------- 382 (426)
+.++.+|+..|..+|++-+. .+.-+.+|+++|+|+| --=|.+.|++....+.+
T Consensus 177 ~av~~~r~~~~~~kIeVEv~-----tleea~ea~~~GaDiI---------------~lDn~~~e~l~~~v~~l~~~~~~~ 236 (277)
T TIGR01334 177 GAIGRLKQTAPERKITVEAD-----TIEQALTVLQASPDIL---------------QLDKFTPQQLHHLHERLKFFDHIP 236 (277)
T ss_pred HHHHHHHHhCCCCCEEEECC-----CHHHHHHHHHcCcCEE---------------EECCCCHHHHHHHHHHHhccCCCE
Q ss_pred --CCCCCcChhhHHHHHH
Q 014369 383 --GVETNVDLRKLMLAGD 398 (426)
Q Consensus 383 --G~~~~iDl~~L~~la~ 398 (426)
-.-.||+++.+.+.++
T Consensus 237 ~leasGGI~~~ni~~ya~ 254 (277)
T TIGR01334 237 TLAAAGGINPENIADYIE 254 (277)
T ss_pred EEEEECCCCHHHHHHHHh
No 491
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=85.11 E-value=19 Score=35.07 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=73.5
Q ss_pred hHHHHhhcCCCCccE-EEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc
Q 014369 114 DITNKFLKGIPRFVK-IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL 192 (426)
Q Consensus 114 ~~~~~~~~~~p~~V~-I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~ 192 (426)
+...++++.++..+. .+|. . ..++.++.+++++.|.+.|+..||--.+. .|. +.++.+++.
T Consensus 117 ~~v~~vr~~~g~~~~l~vDa-----n----~~~~~~~a~~~~~~l~~~~i~~iEeP~~~--------~d~-~~~~~l~~~ 178 (265)
T cd03315 117 AVVAALREAVGDDAELRVDA-----N----RGWTPKQAIRALRALEDLGLDYVEQPLPA--------DDL-EGRAALARA 178 (265)
T ss_pred HHHHHHHHhcCCCCEEEEeC-----C----CCcCHHHHHHHHHHHHhcCCCEEECCCCc--------ccH-HHHHHHHhh
Confidence 455666666765543 3444 2 34789999999999999999999985321 122 334445533
Q ss_pred CCCcEEEE--eCChhhHHHHHHcC-CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEE
Q 014369 193 EGARLPVL--TPNLKGFEAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR 259 (426)
Q Consensus 193 ~~~~l~~l--~~~~~di~~a~~~G-v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~ 259 (426)
.++.+.+= ..+..+++.+++.+ ++.|.+=.. .-.-+....++++.|+.+|+++.
T Consensus 179 ~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~-------------~~GGi~~~~~~~~~A~~~gi~~~ 235 (265)
T cd03315 179 TDTPIMADESAFTPHDAFRELALGAADAVNIKTA-------------KTGGLTKAQRVLAVAEALGLPVM 235 (265)
T ss_pred CCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecc-------------cccCHHHHHHHHHHHHHcCCcEE
Confidence 34443331 23567788877655 676666322 11235667789999999999887
No 492
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=85.00 E-value=31 Score=36.01 Aligned_cols=57 Identities=11% Similarity=0.140 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeC--ChhhHHHHHHcCCCEEE
Q 014369 150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTP--NLKGFEAAIAAGAKEVA 219 (426)
Q Consensus 150 ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~--~~~di~~a~~~Gv~~V~ 219 (426)
-..|++.|.+.|+ .+|+.+ ..|+..+++ ..+..++.--.| ..++++.|++.|+..+.
T Consensus 48 ~~~il~~l~~~G~-g~DvaS------------~gEl~~al~~G~~~~~Iif~gp~K~~~~l~~a~~~Gv~~i~ 107 (394)
T cd06831 48 TPAVLEILAALGT-GFACSS------------KNEMALVQELGVSPENIIYTNPCKQASQIKYAAKVGVNIMT 107 (394)
T ss_pred CHHHHHHHHHcCC-CeEeCC------------HHHHHHHHhcCCCcCCEEEeCCCCCHHHHHHHHHCCCCEEE
Confidence 3567788888885 455543 234444444 234444333334 35678888888876554
No 493
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=84.98 E-value=31 Score=34.96 Aligned_cols=30 Identities=13% Similarity=0.198 Sum_probs=18.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCC-ceEEEEeCC
Q 014369 300 IGVGTPGTVVPMLEAVMAVVPV-EKLAVHLHD 330 (426)
Q Consensus 300 ~G~~~P~~v~~li~~l~~~~p~-~~i~~H~HN 330 (426)
.|+..+++..++++.+.+ .|. ...++|+|.
T Consensus 139 ~Gv~~~~~~~~l~~~i~~-~~~l~l~Gi~~y~ 169 (358)
T cd06819 139 CGVPPGEAALALARTIAA-LPGLRFAGLQAYH 169 (358)
T ss_pred CCCCChHHHHHHHHHHHh-CCCceEeEEEeeC
Confidence 566556777777777655 342 246777755
No 494
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=84.97 E-value=22 Score=36.85 Aligned_cols=125 Identities=13% Similarity=0.171 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEEEEcCCCCCCCHHHHHHHHH
Q 014369 235 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM-GCFEISLGDTIGVGTPGTVVPMLE 313 (426)
Q Consensus 235 ~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~-Gad~I~l~DT~G~~~P~~v~~li~ 313 (426)
+|.++.. ++++.+.+.|++.. .++ |.+-.- . ..+.++++.+.+. |...+.+ .|.|++.+..+.
T Consensus 90 ls~eei~----~~i~~~~~~Gv~~I-~~t---GGEPll--r-~dl~eli~~l~~~~gi~~i~i-tTNG~lL~~~~~---- 153 (373)
T PLN02951 90 LSQDEIV----RLAGLFVAAGVDKI-RLT---GGEPTL--R-KDIEDICLQLSSLKGLKTLAM-TTNGITLSRKLP---- 153 (373)
T ss_pred CCHHHHH----HHHHHHHHCCCCEE-EEE---CCCCcc--h-hhHHHHHHHHHhcCCCceEEE-eeCcchHHHHHH----
Confidence 4555554 45556667787531 232 322111 2 2466777777776 7666666 689998776544
Q ss_pred HHHHh-cCCceEEEEeC-----------CCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCcccHHHHHHHH
Q 014369 314 AVMAV-VPVEKLAVHLH-----------DTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGNVATEDVVYML 379 (426)
Q Consensus 314 ~l~~~-~p~~~i~~H~H-----------Nd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGNa~lEevv~~L 379 (426)
.+++. +..+.|.++.. .++...+.+.-+|.++|.. .|.+++.- |. -.-.+++++..+
T Consensus 154 ~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~-g~--------N~~Ei~~li~~a 224 (373)
T PLN02951 154 RLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMR-GF--------NDDEICDFVELT 224 (373)
T ss_pred HHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecC-CC--------CHHHHHHHHHHH
Confidence 44433 22234555542 1223445666667788875 34444431 11 113466777777
Q ss_pred HhCCC
Q 014369 380 SGLGV 384 (426)
Q Consensus 380 ~~lG~ 384 (426)
+..|+
T Consensus 225 ~~~gi 229 (373)
T PLN02951 225 RDKPI 229 (373)
T ss_pred HhCCC
Confidence 76664
No 495
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=84.96 E-value=36 Score=32.28 Aligned_cols=178 Identities=15% Similarity=0.124 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhCCCCeEEEecC-CCCCccccccCHHHHHHHhHhcCCCcEEE--EeCChhhHHHHHHcCCCEEEEeccC
Q 014369 148 GVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIFASA 224 (426)
Q Consensus 148 ~~ki~I~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~~di~~a~~~Gv~~V~i~~~~ 224 (426)
.+-+++++.+.+.|++.+=+=-. ..... ...+ .++++.+.+..+.++.+ -.+..++++.+.++|++.|-+...
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~~g--~~~~-~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~- 103 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDGAKEG--GPVN-LPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTA- 103 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccC--CCCc-HHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChH-
Confidence 35688999999999987665211 11000 0012 24444444333333333 457889999999999998765321
Q ss_pred ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecC--CCCCC-CCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 014369 225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGC--PVEGA-IPPSKVAYVAKELHDMGCFEISLGDTI 300 (426)
Q Consensus 225 Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~--pd~~r-~~~~~l~~~~~~l~~~Gad~I~l~DT~ 300 (426)
.++....+.+.+++.|. .+.+.+-.--+. ....+ .+.....++++.+.+.|++.|.+-|-.
T Consensus 104 ---------------~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~ 168 (230)
T TIGR00007 104 ---------------AVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDIS 168 (230)
T ss_pred ---------------HhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeec
Confidence 12222334445556653 243322211000 00001 112344567888889999977766543
Q ss_pred --CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHH-HHHHHHHHcCCCEE
Q 014369 301 --GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGISTV 350 (426)
Q Consensus 301 --G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~-ANaLaAl~aGa~~V 350 (426)
|...... .++++.+++..+. ++.+-+ |... .-...+.+.||+.|
T Consensus 169 ~~g~~~g~~-~~~i~~i~~~~~i-pvia~G----Gi~~~~di~~~~~~Gadgv 215 (230)
T TIGR00007 169 RDGTLSGPN-FELTKELVKAVNV-PVIASG----GVSSIDDLIALKKLGVYGV 215 (230)
T ss_pred CCCCcCCCC-HHHHHHHHHhCCC-CEEEeC----CCCCHHHHHHHHHCCCCEE
Confidence 3333322 5566777766442 444433 1111 22333445777754
No 496
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=84.83 E-value=30 Score=34.18 Aligned_cols=138 Identities=19% Similarity=0.261 Sum_probs=80.3
Q ss_pred CCcEEEEe-CChhhHHHHHHcCCCEEEEeccCChHHHhhhc------CCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEee
Q 014369 194 GARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNI------NCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCV 265 (426)
Q Consensus 194 ~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~------~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~ 265 (426)
+-++.+++ .+.-..+.+.++|++.+.+..++ ....+ ..|.++++..++.+.+.+ ... |.+.+
T Consensus 11 ~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~----~~~~lG~pDt~~vtl~em~~~~~~V~r~~---~~p~viaD~--- 80 (254)
T cd06557 11 GEKIVMLTAYDYPTAKLADEAGVDVILVGDSL----GMVVLGYDSTLPVTLDEMIYHTRAVRRGA---PRALVVADM--- 80 (254)
T ss_pred CCcEEEEeCCCHHHHHHHHHcCCCEEEECHHH----HHHHcCCCCCCCcCHHHHHHHHHHHHhcC---CCCeEEEeC---
Confidence 34555544 34445566778899988643332 22223 347788887776655443 333 33222
Q ss_pred ecCCCCC-CCCHHHHHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-cCCc-eEEE--EeCCCcC------
Q 014369 266 VGCPVEG-AIPPSKVAYVAKELHD-MGCFEISLGDTIGVGTPGTVVPMLEAVMAV-VPVE-KLAV--HLHDTYG------ 333 (426)
Q Consensus 266 fg~pd~~-r~~~~~l~~~~~~l~~-~Gad~I~l~DT~G~~~P~~v~~li~~l~~~-~p~~-~i~~--H~HNd~G------ 333 (426)
|+.+ ..+++...+.+.++.+ +|++.|.|-|. .++.+.|+++++. +|.. +|++ ..++.+|
T Consensus 81 ---~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~g 151 (254)
T cd06557 81 ---PFGSYQTSPEQALRNAARLMKEAGADAVKLEGG------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQG 151 (254)
T ss_pred ---CCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCc------HHHHHHHHHHHHcCCCeeccccccceeeeccCCceecc
Confidence 3333 3568887776666655 99999999996 3677777777764 3421 2222 3333332
Q ss_pred -------cHHHHHHHHHHcCCCEE
Q 014369 334 -------QSLPNILISLQMGISTV 350 (426)
Q Consensus 334 -------lA~ANaLaAl~aGa~~V 350 (426)
-++.-+.+-.+|||+.|
T Consensus 152 rt~~~a~~~i~ra~a~~~AGA~~i 175 (254)
T cd06557 152 KTEEEAERLLEDALALEEAGAFAL 175 (254)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEE
Confidence 22345556669999866
No 497
>PLN02433 uroporphyrinogen decarboxylase
Probab=84.81 E-value=6.2 Score=40.26 Aligned_cols=72 Identities=15% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEcC-CCCCCCHHHHHHHHH--------HHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCC
Q 014369 277 SKVAYVAKELHDMGCFEISLGD-TIGVGTPGTVVPMLE--------AVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGI 347 (426)
Q Consensus 277 ~~l~~~~~~l~~~Gad~I~l~D-T~G~~~P~~v~~li~--------~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa 347 (426)
+.+.++++...++|++.|.+.| +.|.+.|.+..+++. .+++..+..++.+|.+.+. ...-.-.+.|+
T Consensus 179 ~~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~cG~~----~~~~~~~~~~~ 254 (345)
T PLN02433 179 DAVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYANGSG----GLLERLAGTGV 254 (345)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCH----HHHHHHHhcCC
Q ss_pred CEEee
Q 014369 348 STVDC 352 (426)
Q Consensus 348 ~~VD~ 352 (426)
+.+..
T Consensus 255 ~~i~~ 259 (345)
T PLN02433 255 DVIGL 259 (345)
T ss_pred CEEEc
No 498
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=84.79 E-value=12 Score=35.98 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=5.8
Q ss_pred HHHHHHHhcCCc
Q 014369 246 AVAHAAKVLSIP 257 (426)
Q Consensus 246 ~~v~~Ak~~G~~ 257 (426)
++++...+.|+.
T Consensus 23 ~i~~~L~~~GV~ 34 (265)
T cd03174 23 EIAEALDEAGVD 34 (265)
T ss_pred HHHHHHHHcCCC
Confidence 444444455654
No 499
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=84.64 E-value=16 Score=36.72 Aligned_cols=152 Identities=15% Similarity=0.137 Sum_probs=81.7
Q ss_pred HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEe--ccCChH-
Q 014369 151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIF--ASASEA- 227 (426)
Q Consensus 151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~--~~~Sd~- 227 (426)
..=++.|.++|+|+|..+--..| .++....++.--+..+.+=++++.+..++.+.|++.|+-- ..+.+.
T Consensus 86 ~~Ea~~L~~~GvDiID~Te~lrp--------ad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~ 157 (293)
T PRK04180 86 FVEAQILEALGVDYIDESEVLTP--------ADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVV 157 (293)
T ss_pred HHHHHHHHHcCCCEEeccCCCCc--------hHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHH
Confidence 55578899999999974321122 3455666664235555555688988889999999999875 111110
Q ss_pred -----------HHhhhcCCCHHHHHHH------HHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369 228 -----------FSKSNINCSIEDSLVR------YRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (426)
Q Consensus 228 -----------~~~~~~~~s~~e~l~~------~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~ 289 (426)
..+.-.+.|.++.... -.+.++.+++. .++|. +|+ . .+-.+|+.+..+. ++
T Consensus 158 ~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV-~~A--e----GGI~TPedaa~vm----e~ 226 (293)
T PRK04180 158 EAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVV-NFA--A----GGIATPADAALMM----QL 226 (293)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEE-EEE--e----CCCCCHHHHHHHH----Hh
Confidence 0111123343331110 11334444443 34442 222 1 2333777655544 68
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHHHHHHHHhcCC
Q 014369 290 GCFEISLGDTI-GVGTPGTVVPMLEAVMAVVPV 321 (426)
Q Consensus 290 Gad~I~l~DT~-G~~~P~~v~~li~~l~~~~p~ 321 (426)
||+.|.+.=.+ ..-.|.+..+-+.....++.+
T Consensus 227 GAdgVaVGSaI~ks~dP~~~akafv~ai~~~~~ 259 (293)
T PRK04180 227 GADGVFVGSGIFKSGDPEKRARAIVEATTHYDD 259 (293)
T ss_pred CCCEEEEcHHhhcCCCHHHHHHHHHHHHHHcCC
Confidence 99987765432 223676655544444455544
No 500
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=84.64 E-value=11 Score=37.45 Aligned_cols=107 Identities=15% Similarity=0.196 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHHhCC---CCEEEEcCCCCCCCH-----HHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHH
Q 014369 272 GAIPPSKVAYVAKELHDMG---CFEISLGDTIGVGTP-----GTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILIS 342 (426)
Q Consensus 272 ~r~~~~~l~~~~~~l~~~G---ad~I~l~DT~G~~~P-----~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaA 342 (426)
+|-+...+..+.+.+...| .+++.|.|++..-.= .++..-++.+|+.+| ..+|++=+|+- .-+++|
T Consensus 120 TRKt~Pg~r~l~k~Av~~GGg~~HR~~L~d~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~-----eea~~A 194 (265)
T TIGR00078 120 TRKTTPGLRLLEKYAVRVGGGDNHRLGLSDAVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESL-----EEAEEA 194 (265)
T ss_pred cCCCChhhhHHHHHHHHhcCCcccCCCcccceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCH-----HHHHHH
Confidence 4555556666666666554 347777776544221 124555788888886 56788888853 778899
Q ss_pred HHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCC--CC----CCcChhhHHHHHH
Q 014369 343 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG--VE----TNVDLRKLMLAGD 398 (426)
Q Consensus 343 l~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG--~~----~~iDl~~L~~la~ 398 (426)
+++|+|+| .-||...|++-...+.+. +. -||+++.+.++++
T Consensus 195 ~~~gaDyI---------------~ld~~~~e~lk~~v~~~~~~ipi~AsGGI~~~ni~~~a~ 241 (265)
T TIGR00078 195 AEAGADII---------------MLDNMKPEEIKEAVQLLKGRVLLEASGGITLDNLEEYAE 241 (265)
T ss_pred HHcCCCEE---------------EECCCCHHHHHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 99999988 334555566555554321 22 3788888887665
Done!